Citrus Sinensis ID: 018582

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350---
Protein Sequence
MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLLEAICVE
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEHHHHHHHHHHHHcccHHHHHHHHHHHcccccccHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MTEKAEALLEKMKELnlgfssmpfnSLMTLYAktghpekiPAIIQEMKassimpdsytYNVWMRALAAVNDISGAERVIEEMKRDgrvaadwtTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRlafpntaniSYLNMIQVLVNlkdlpgaekCFKEWesgcatydiRVTNVMIGAYAKEGRLENAEELKERARrrgadpnaktWEIFSDYYLRNGDMKLAVDCLEKAIdtgrgdggkwvpsSETIRTFMRHFeqekdvdgAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLLEAICVE
Flexible Loop (DISEMBL)
MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKErarrrgadpnaktwEIFSDYYLRNGDMKLAVDCLEKAIdtgrgdggkwvPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRtyaaagrtspvmLRRLKMEKVEVSEASKKLLEAICVE
Low Complexity Region (SEG)
MTekaeallekmkelnlGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLLEAICVE
Disordered region (IsUnstruct)
****************LGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKE**********************KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRL*********************
Disordered Region (DISOPRED)
MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLLEAICVE
Disordered Region (DISEMBL)
MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLLEAICVE
Disordered Region (DISPRO)
MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLLEAICVE
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGxxxxxxxxxxxxxxxxxxxxxGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLLEAICVE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	353	2.2.26 [Sep-21-2011]
O22714	491	Pentatricopeptide repeat-	yes	no	0.991	0.712	0.689	1e-149
Q9FZ24	537	Pentatricopeptide repeat-	no	no	0.985	0.648	0.412	3e-76
Q93WC5	502	Pentatricopeptide repeat-	no	no	0.968	0.681	0.42	4e-72
Q9SY07	532	Pentatricopeptide repeat-	no	no	0.963	0.639	0.334	7e-55
Q8LPS6	524	Pentatricopeptide repeat-	no	no	0.849	0.572	0.354	6e-54
Q3E911	491	Pentatricopeptide repeat-	no	no	0.946	0.680	0.314	2e-50
Q84JR3	492	Pentatricopeptide repeat-	no	no	0.974	0.699	0.299	1e-44
Q9SKU6	490	Pentatricopeptide repeat-	no	no	0.830	0.597	0.308	2e-41
Q9C7F1	566	Putative pentatricopeptid	no	no	0.900	0.561	0.264	1e-26
Q94B59	409	Pentatricopeptide repeat-	no	no	0.594	0.513	0.314	1e-25

>sp|O22714|PPR86_ARATH Pentatricopeptide repeat-containing protein At1g60770 OS=Arabidopsis thaliana GN=At1g60770 PE=2 SV=1

 Score =  529 bits (1362), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 242/351 (68%), Positives = 294/351 (83%)

Query: 1   MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYN 60
           +TEKAE LL KMKELN+  SSM +NSLMTLY KTG  EK+PA+IQE+KA ++MPDSYTYN
Sbjct: 138 LTEKAEGLLNKMKELNITPSSMSYNSLMTLYTKTGETEKVPAMIQELKAENVMPDSYTYN 197

Query: 61  VWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELEN 120
           VWMRALAA NDISG ERVIEEM RDGRVA DWTT+SN+ASIYV+AGL +KAE+AL+ELE 
Sbjct: 198 VWMRALAATNDISGVERVIEEMNRDGRVAPDWTTYSNMASIYVDAGLSQKAEKALQELEM 257

Query: 121 RNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPG 180
           +N  RD +AYQFLITLYG+ G L+EVYRIWRSLRLA P T+N++YLNMIQVLV L DLPG
Sbjct: 258 KNTQRDFTAYQFLITLYGRLGKLTEVYRIWRSLRLAIPKTSNVAYLNMIQVLVKLNDLPG 317

Query: 181 AEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSD 240
           AE  FKEW++ C+TYDIR+ NV+IGAYA+EG ++ A ELKE+A RRG   NAKTWEIF D
Sbjct: 318 AETLFKEWQANCSTYDIRIVNVLIGAYAQEGLIQKANELKEKAPRRGGKLNAKTWEIFMD 377

Query: 241 YYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILK 300
           YY+++GDM  A++C+ KA+  G+GDGGKW+PS ET+R  M +FEQ+KDV+GAE  LEILK
Sbjct: 378 YYVKSGDMARALECMSKAVSIGKGDGGKWLPSPETVRALMSYFEQKKDVNGAENLLEILK 437

Query: 301 KAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLLEAIC 351
              D++G E+FEPLIRTYAAAG++ P M RRLKME VEV+EA+KKLL+ + 
Sbjct: 438 NGTDNIGAEIFEPLIRTYAAAGKSHPAMRRRLKMENVEVNEATKKLLDEVS 488

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZ24|PPR4_ARATH Pentatricopeptide repeat-containing protein At1g02370, mitochondrial OS=Arabidopsis thaliana GN=At1g02370 PE=2 SV=1

 Score =  285 bits (730), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 144/349 (41%), Positives = 210/349 (60%), Gaps = 1/349 (0%)

Query: 3   EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVW 62
           EKA+A  E M ELN   +S+PFN++M++Y +   PEK+P ++  MK   I P   TY++W
Sbjct: 189 EKAKAHFEIMDELNFVNNSLPFNNMMSMYMRLSQPEKVPVLVDAMKQRGISPCGVTYSIW 248

Query: 63  MRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRN 122
           M++  ++ND+ G E++I+EM +D      W TFSNLA+IY +AGL+EKA+ ALK +E + 
Sbjct: 249 MQSCGSLNDLDGLEKIIDEMGKDSEAKTTWNTFSNLAAIYTKAGLYEKADSALKSMEEKM 308

Query: 123 AHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAE 182
              +  ++ FL++LY       EVYR+W SL+ A P   N+SYL M+Q +  L DL G +
Sbjct: 309 NPNNRDSHHFLMSLYAGISKGPEVYRVWESLKKARPEVNNLSYLVMLQAMSKLGDLDGIK 368

Query: 183 KCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYY 242
           K F EWES C  YD+R+ N+ I  Y K    E AE++ + A ++   P +K  ++   + 
Sbjct: 369 KIFTEWESKCWAYDMRLANIAINTYLKGNMYEEAEKILDGAMKKSKGPFSKARQLLMIHL 428

Query: 243 LRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKA 302
           L N    LA+  LE A+     +  +W  SSE +  F  HFE+ KDVDGAE F +IL   
Sbjct: 429 LENDKADLAMKHLEAAVSDSAENKDEWGWSSELVSLFFLHFEKAKDVDGAEDFCKILSN- 487

Query: 303 VDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLLEAIC 351
              L  E    LI+TYAAA +TSP M  RL  +++EVSE  + LL+ +C
Sbjct: 488 WKPLDSETMTFLIKTYAAAEKTSPDMRERLSQQQIEVSEEIQDLLKTVC 536

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WC5|PP300_ARATH Pentatricopeptide repeat-containing protein At4g01990, mitochondrial OS=Arabidopsis thaliana GN=At4g01990 PE=2 SV=1

 Score =  271 bits (694), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 147/350 (42%), Positives = 209/350 (59%), Gaps = 8/350 (2%)

Query: 4   KAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWM 63
           KA+A  E M +LN   +S+PFN+LM +Y   G PEK+PA++  MK  SI P   TY++W+
Sbjct: 158 KAKAHFENMVDLNHVSNSLPFNNLMAMYMGLGQPEKVPALVVAMKEKSITPCDITYSMWI 217

Query: 64  RALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNA 123
           ++  ++ D+ G E+V++EMK +G     W TF+NLA+IY++ GL+ KAE ALK LEN N 
Sbjct: 218 QSCGSLKDLDGVEKVLDEMKAEGEGIFSWNTFANLAAIYIKVGLYGKAEEALKSLEN-NM 276

Query: 124 HRDL-SAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAE 182
           + D+   Y FLI LY    N SEVYR+W  L+  +PN  N SYL M++ L  L D+ G +
Sbjct: 277 NPDVRDCYHFLINLYTGIANASEVYRVWDLLKKRYPNVNNSSYLTMLRALSKLDDIDGVK 336

Query: 183 KCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYY 242
           K F EWES C TYD+R+ NV I +Y K+   E AE +   A ++     +K  ++   + 
Sbjct: 337 KVFAEWESTCWTYDMRMANVAISSYLKQNMYEEAEAVFNGAMKKCKGQFSKARQLLMMHL 396

Query: 243 LRNGDMKLAVDCLEKAI-DTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKK 301
           L+N    LA+   E A+ D  +     W  SSE I +F  HFE+ KDVDGAE F + L K
Sbjct: 397 LKNDQADLALKHFEAAVLDQDKN----WTWSSELISSFFLHFEEAKDVDGAEEFCKTLTK 452

Query: 302 AVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLLEAIC 351
               L  E +  L++TY AAG+  P M +RL+ + + V E  + LL  IC
Sbjct: 453 -WSPLSSETYTLLMKTYLAAGKACPDMKKRLEEQGILVDEEQECLLSKIC 501

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SY07|PP302_ARATH Pentatricopeptide repeat-containing protein At4g02820, mitochondrial OS=Arabidopsis thaliana GN=At4g02820 PE=2 SV=1

 Score =  214 bits (546), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 116/347 (33%), Positives = 199/347 (57%), Gaps = 7/347 (2%)

Query: 1   MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYN 60
           +++KAEAL EKM E     S +P+N ++++Y   G  EK+P +I+E+K  +  PD  TYN
Sbjct: 177 LSDKAEALFEKMGECGFLKSCLPYNHMLSMYISRGQFEKVPVLIKELKIRT-SPDIVTYN 235

Query: 61  VWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELEN 120
           +W+ A A+ ND+ GAE+V  + K + ++  DW T+S L ++Y +    EKA  ALKE+E 
Sbjct: 236 LWLTAFASGNDVEGAEKVYLKAKEE-KLNPDWVTYSVLTNLYAKTDNVEKARLALKEMEK 294

Query: 121 RNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPG 180
             + ++  AY  LI+L+   G+   V   W+ ++ +F    +  YL+MI  +V L +   
Sbjct: 295 LVSKKNRVAYASLISLHANLGDKDGVNLTWKKVKSSFKKMNDAEYLSMISAVVKLGEFEQ 354

Query: 181 AEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSD 240
           A+  + EWES   T D R+ N+++  Y     +   E+  ER   +G +P+  TWEI + 
Sbjct: 355 AKGLYDEWESVSGTGDARIPNLILAEYMNRDEVLLGEKFYERIVEKGINPSYSTWEILTW 414

Query: 241 YYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILK 300
            YL+  DM+  +DC  KAID+ +    KW  +   ++   +  E++ +V GAE  + +L+
Sbjct: 415 AYLKRKDMEKVLDCFGKAIDSVK----KWTVNVRLVKGACKELEEQGNVKGAEKLMTLLQ 470

Query: 301 KAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLL 347
           KA   +  +++  L+RTYA AG  + ++  R+  + VE+ E +K+L+
Sbjct: 471 KA-GYVNTQLYNSLLRTYAKAGEMALIVEERMAKDNVELDEETKELI 516

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPS6|PPR3_ARATH Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana GN=At1g02150 PE=2 SV=2

 Score =  211 bits (538), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 107/302 (35%), Positives = 171/302 (56%), Gaps = 2/302 (0%)

Query: 3   EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVW 62
           EKAEALL  M++       +PFN +MTLY      +K+ A++ EMK   I  D Y+YN+W
Sbjct: 186 EKAEALLNTMRDKGYALHPLPFNVMMTLYMNLREYDKVDAMVFEMKQKDIRLDIYSYNIW 245

Query: 63  MRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRN 122
           + +  ++  +   E V ++MK D  +  +WTTFS +A++Y++ G  EKAE AL+++E R 
Sbjct: 246 LSSCGSLGSVEKMELVYQQMKSDVSIYPNWTTFSTMATMYIKMGETEKAEDALRKVEARI 305

Query: 123 AHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAE 182
             R+   Y +L++LYG  GN  E+YR+W   +   P+  N+ Y  ++  LV + D+ GAE
Sbjct: 306 TGRNRIPYHYLLSLYGSLGNKKELYRVWHVYKSVVPSIPNLGYHALVSSLVRMGDIEGAE 365

Query: 183 KCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYY 242
           K ++EW    ++YD R+ N+++ AY K  +LE AE L +     G  P++ TWEI +  +
Sbjct: 366 KVYEEWLPVKSSYDPRIPNLLMNAYVKNDQLETAEGLFDHMVEMGGKPSSSTWEILAVGH 425

Query: 243 LRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKA 302
            R   +  A+ CL  A  +  G    W P    +  F +  E+E DV   E  LE+L+++
Sbjct: 426 TRKRCISEALTCLRNAF-SAEG-SSNWRPKVLMLSGFFKLCEEESDVTSKEAVLELLRQS 483

Query: 303 VD 304
            D
Sbjct: 484 GD 485

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E911|PP400_ARATH Pentatricopeptide repeat-containing protein At5g27460 OS=Arabidopsis thaliana GN=At5g27460 PE=2 SV=1

 Score =  199 bits (507), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 106/337 (31%), Positives = 180/337 (53%), Gaps = 3/337 (0%)

Query: 1   MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYN 60
           M ++AEAL+EK+  L    +  PFN +M LY  +G  EK+  ++  MK + I  +  +YN
Sbjct: 158 MVKEAEALMEKLNGLGFLVTPHPFNEMMKLYEASGQYEKVVMVVSMMKGNKIPRNVLSYN 217

Query: 61  VWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELEN 120
           +WM A   V+ ++  E V +EM  D  V   W++   LA++Y+++G  EKA   L++ E 
Sbjct: 218 LWMNACCEVSGVAAVETVYKEMVGDKSVEVGWSSLCTLANVYIKSGFDEKARLVLEDAEK 277

Query: 121 RNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPG 180
                +   Y FLITLY   GN   V R+W   +      + ++Y+ ++  LV   DL  
Sbjct: 278 MLNRSNRLGYFFLITLYASLGNKEGVVRLWEVSKSVCGRISCVNYICVLSSLVKTGDLEE 337

Query: 181 AEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSD 240
           AE+ F EWE+ C  YD+RV+NV++GAY + G +  AE L      RG  PN KTWEI  +
Sbjct: 338 AERVFSEWEAQCFNYDVRVSNVLLGAYVRNGEIRKAESLHGCVLERGGTPNYKTWEILME 397

Query: 241 YYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILK 300
            +++  +M+ A+D + +     R     W PS   +     +FE+E+ ++ A  ++  L 
Sbjct: 398 GWVKCENMEKAIDAMHQVFVLMR--RCHWRPSHNIVMAIAEYFEKEEKIEEATAYVRDLH 455

Query: 301 KAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKV 337
           + +    + ++  L+R +  A R +  +   +K++K+
Sbjct: 456 R-LGLASLPLYRLLLRMHEHAKRPAYDIYEMMKLDKL 491

Arabidopsis thaliana (taxid: 3702)

>sp|Q84JR3|PP334_ARATH Pentatricopeptide repeat-containing protein At4g21705, mitochondrial OS=Arabidopsis thaliana GN=At4g21705 PE=2 SV=1

 Score =  180 bits (457), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 104/347 (29%), Positives = 174/347 (50%), Gaps = 3/347 (0%)

Query: 2   TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNV 61
            EK+    EKMKE+    SS+ +N++M LY   G  EK+P +++EMK  ++ PD+Y+Y +
Sbjct: 142 VEKSLLHFEKMKEMGFVTSSLTYNNIMCLYTNIGQHEKVPKVLEEMKEENVAPDNYSYRI 201

Query: 62  WMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENR 121
            + A  A+ D+      + +M+R   +  DW T++  A  Y++ G  ++A   LK  ENR
Sbjct: 202 CINAFGAMYDLERIGGTLRDMERRQDITMDWNTYAVAAKFYIDGGDCDRAVELLKMSENR 261

Query: 122 NAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGA 181
              +D   Y  LITLY + G   EV R+W   +       N  YL ++Q LV +  L  A
Sbjct: 262 LEKKDGEGYNHLITLYARLGKKIEVLRLWDLEKDVCKRRINQDYLTVLQSLVKIDALVEA 321

Query: 182 EKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDY 241
           E+   EW+S    YD RV N +I  Y  +   E AE + E   RRG     ++WE+ +  
Sbjct: 322 EEVLTEWKSSGNCYDFRVPNTVIRGYIGKSMEEKAEAMLEDLARRGKATTPESWELVATA 381

Query: 242 YLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKK 301
           Y   G ++ A  C++ A+    G   KW P    + + +     E  +   E F+  L+ 
Sbjct: 382 YAEKGTLENAFKCMKTALGVEVG-SRKWRPGLTLVTSVLSWVGDEGSLKEVESFVASLRN 440

Query: 302 AVDDLGVEVFEPLIRT-YAAAGRTSPVMLRRLKMEKVEVSEASKKLL 347
            +  +  +++  L++      GR    +L+R+K +K+E+ E +  +L
Sbjct: 441 CI-GVNKQMYHALVKADIREGGRNIDTLLQRMKDDKIEIDEETTVIL 486

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SKU6|PP166_ARATH Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidopsis thaliana GN=At2g20710 PE=2 SV=1

 Score =  170 bits (430), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 165/298 (55%), Gaps = 5/298 (1%)

Query: 3   EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVW 62
            KAE + ++MKEL      +P+N ++ LY +TG    +  +++EM+  ++ PD +T N  
Sbjct: 156 HKAEQVFQEMKELGFLKGCLPYNVMLNLYVRTGKYTMVEKLLREMEDETVKPDIFTVNTR 215

Query: 63  MRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENR- 121
           + A + V+D+ G E+ +   + D  +  DW T+++ A+ Y++AGL EKA   L++ E   
Sbjct: 216 LHAYSVVSDVEGMEKFLMRCEADQGLHLDWRTYADTANGYIKAGLTEKALEMLRKSEQMV 275

Query: 122 NAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGA 181
           NA +   AY+ L++ YG  G   EVYR+W SL        N  Y+++I  L+ + D+   
Sbjct: 276 NAQKRKHAYEVLMSFYGAAGKKEEVYRLW-SLYKELDGFYNTGYISVISALLKMDDIEEV 334

Query: 182 EKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDY 241
           EK  +EWE+G + +DIR+ +++I  Y K+G +E AEE+     ++    +  TWE  +  
Sbjct: 335 EKIMEEWEAGHSLFDIRIPHLLITGYCKKGMMEKAEEVVNILVQKWRVEDTSTWERLALG 394

Query: 242 YLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEIL 299
           Y   G M+ AV+  ++AI+  +     W P    + + + + E ++D++G    L +L
Sbjct: 395 YKMAGKMEKAVEKWKRAIEVSKPG---WRPHQVVLMSCVDYLEGQRDMEGLRKILRLL 449

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7F1|PPR61_ARATH Putative pentatricopeptide repeat-containing protein At1g28020 OS=Arabidopsis thaliana GN=At1g28020 PE=3 SV=2

 Score =  120 bits (302), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 161/333 (48%), Gaps = 15/333 (4%)

Query: 4   KAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWM 63
           KAEA  +KM++L L    +P+N++M+LY+   + EK+  ++ EMK + +  D+ T N  +
Sbjct: 156 KAEATFQKMRDLGLLLRPVPYNAMMSLYSALKNREKVEELLLEMKDNDVEADNVTVNNVL 215

Query: 64  RALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNA 123
           +  +AV D++  E+ + + +    +  +W T  ++A  Y+ A    KA + L+  E    
Sbjct: 216 KLYSAVCDVTEMEKFLNKWEGIHGIKLEWHTTLDMAKAYLRARSSGKAMKMLRLTEQLVD 275

Query: 124 HRDL-SAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAE 182
            + L SAY  L+ LYG+ GN  EV R+W+  +       N  Y  +I+ L+ + D+ GAE
Sbjct: 276 QKSLKSAYDHLMKLYGEAGNREEVLRVWKLYKSKIGERDNNGYRTVIRSLLKVDDIVGAE 335

Query: 183 KCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEEL---KERARRRGADPNAKTWEIFS 239
           + +K WES    +D R+  ++   Y   G  E AE+L   K    RR   P     E + 
Sbjct: 336 EIYKVWESLPLEFDHRIPTMLASGYRDRGMTEKAEKLMNSKTIKDRRMNKPVTPLLEQWG 395

Query: 240 DYYLRNGDMKLAVDCLEKAIDTGRG-DGGKWVPSSETIRTFMRHF-------EQEKDVDG 291
           D  ++  D+K  +  L  +    +     +W+   +    ++  +       E    ++ 
Sbjct: 396 D-QMKPSDLKCLIKNLRDSKQFSKALQVSEWMGEKQVCNLYLEDYAARLYLTENVLGLEE 454

Query: 292 AEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRT 324
           AE + E + + + D  V V   L+ +YA + + 
Sbjct: 455 AEKYFENIPENMKDYSVYV--ALLSSYAKSDKN 485

Arabidopsis thaliana (taxid: 3702)

>sp|Q94B59|PP372_ARATH Pentatricopeptide repeat-containing protein At5g09450, mitochondrial OS=Arabidopsis thaliana GN=At5g09450 PE=2 SV=1

 Score =  117 bits (294), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 113/213 (53%), Gaps = 3/213 (1%)

Query: 2   TEKAEALLEKMKELN-LGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYN 60
           TE+AEAL +++ E + L F ++ +N +MTLY   G  EK+P +I+ +K   + PD +TYN
Sbjct: 172 TERAEALFKRIIESDSLTFGAITYNEMMTLYMSVGQVEKVPEVIEVLKQKKVSPDIFTYN 231

Query: 61  VWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALK-ELE 119
           +W+ + AA  +I    +++EEM+ D      W  + +L SIY+ +     AE  L  E E
Sbjct: 232 LWLSSCAATFNIDELRKILEEMRHDASSNEGWVRYIDLTSIYINSSRVTNAESTLPVEAE 291

Query: 120 NRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLP 179
              + R+   Y FL+ L+   GN   + +IW+SLR      ++ SY+ ++   + L  L 
Sbjct: 292 KSISQREWITYDFLMILHTGLGNKVMIDQIWKSLRNTNQILSSRSYICVLSSYLMLGHLR 351

Query: 180 GAEKCFKEW-ESGCATYDIRVTNVMIGAYAKEG 211
            AE+   +W ES    +D      ++ A+   G
Sbjct: 352 EAEEIIHQWKESKTTEFDASACLRILNAFRDVG 384

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	353
225468646	489	PREDICTED: pentatricopeptide repeat-cont	1.0	0.721	0.796	1e-167
255573975	490	pentatricopeptide repeat-containing prot	1.0	0.720	0.796	1e-166
224119780	490	predicted protein [Populus trichocarpa]	1.0	0.720	0.781	1e-164
356526773	490	PREDICTED: pentatricopeptide repeat-cont	1.0	0.720	0.776	1e-157
297837423	491	pentatricopeptide repeat-containing prot	0.997	0.716	0.691	1e-149
15219808	491	pentatricopeptide repeat-containing prot	0.991	0.712	0.689	1e-147
449434959	489	PREDICTED: pentatricopeptide repeat-cont	0.991	0.715	0.716	1e-144
296083491	444	unnamed protein product [Vitis vinifera]	0.872	0.693	0.694	1e-137
343172214	359	pentatricopeptide repeat-containing prot	0.827	0.813	0.702	1e-123
343172216	359	pentatricopeptide repeat-containing prot	0.827	0.813	0.695	1e-122

>gi|225468646|ref|XP_002267979.1| PREDICTED: pentatricopeptide repeat-containing protein At1g60770 [Vitis vinifera]

 Score =  592 bits (1527), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 281/353 (79%), Positives = 311/353 (88%)

Query: 1   MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYN 60
           +TEKAEAL+E+MKEL LG SSMP+NSLMTLY K G PEKIP IIQE+K+  IMPDSYTYN
Sbjct: 137 LTEKAEALMERMKELKLGLSSMPYNSLMTLYTKIGQPEKIPTIIQELKSLDIMPDSYTYN 196

Query: 61  VWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELEN 120
           +WMRALAAVNDISG ERVIEEMKRDGRVA+DWTT+SNLASIYV+AG+FEKAE+ALKELE 
Sbjct: 197 IWMRALAAVNDISGVERVIEEMKRDGRVASDWTTYSNLASIYVDAGVFEKAEKALKELEK 256

Query: 121 RNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPG 180
           RNA RDL+A+QFLITLYG+ GNL EVYR+WRSLRLAFP TAN+SYLNMIQVLVNLKDLPG
Sbjct: 257 RNACRDLTAFQFLITLYGRIGNLLEVYRVWRSLRLAFPKTANVSYLNMIQVLVNLKDLPG 316

Query: 181 AEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSD 240
           AEKCF+EWESGC+ YDIRV N +IGAYAK+G LE AEELKE ARRRGA PNAKTWEIF  
Sbjct: 317 AEKCFREWESGCSIYDIRVANALIGAYAKDGLLEKAEELKEHARRRGAKPNAKTWEIFLA 376

Query: 241 YYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILK 300
           Y+L+N +MK AVDC+  AI TGRGDG KWVPS E I  FM+HFEQEKDVDGAEGFLEILK
Sbjct: 377 YHLKNREMKQAVDCVANAISTGRGDGQKWVPSPEIIGVFMQHFEQEKDVDGAEGFLEILK 436

Query: 301 KAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLLEAICVE 353
             V+DLGVEVFE LIR YAAAGRTSPVM RRLKME VEVS++ KKLLE + VE
Sbjct: 437 STVEDLGVEVFESLIRIYAAAGRTSPVMRRRLKMENVEVSDSCKKLLEEVSVE 489

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573975|ref|XP_002527905.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223532680|gb|EEF34462.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  590 bits (1520), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 281/353 (79%), Positives = 308/353 (87%)

Query: 1   MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYN 60
           MTE+AEAL+EKMKELNLG SSM +NSLMTLY K G PE+IP IIQEMK+ SIMPDSYTYN
Sbjct: 138 MTEEAEALMEKMKELNLGLSSMSYNSLMTLYTKIGQPERIPGIIQEMKSDSIMPDSYTYN 197

Query: 61  VWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELEN 120
           VWMRALAAVNDISGAERVIEEMKRDGRVAADWTT+SNLASIYV+A LFEKAE+ LKELE 
Sbjct: 198 VWMRALAAVNDISGAERVIEEMKRDGRVAADWTTYSNLASIYVDAQLFEKAEKTLKELEK 257

Query: 121 RNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPG 180
           RN HRD SA+QFLITLYG+ GNL E+YRIWRSLRLAFP T+NISYLNMIQVLVNLKDLPG
Sbjct: 258 RNVHRDHSAFQFLITLYGRIGNLHELYRIWRSLRLAFPKTSNISYLNMIQVLVNLKDLPG 317

Query: 181 AEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSD 240
           AEKCF+EWES C+ YDIRV NV+I AYAK+G LE AEELKERA  RGA PNAKTWEIFSD
Sbjct: 318 AEKCFREWESNCSGYDIRVANVLIKAYAKKGLLEKAEELKERAIGRGAKPNAKTWEIFSD 377

Query: 241 YYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILK 300
           YY  NGD+KL+V+CL  AI  GRGDG KW+PS E + +FM HFEQ+KDVDGAEGF+EILK
Sbjct: 378 YYFENGDIKLSVECLANAISKGRGDGQKWIPSPEVVASFMAHFEQQKDVDGAEGFIEILK 437

Query: 301 KAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLLEAICVE 353
           KA DD+   VFE LIRTYAAAGRTS V+ RRLKME VEVSEA +KLLE ICVE
Sbjct: 438 KATDDVEANVFESLIRTYAAAGRTSQVLRRRLKMENVEVSEAGQKLLEMICVE 490

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119780|ref|XP_002331159.1| predicted protein [Populus trichocarpa] gi|118487894|gb|ABK95769.1| unknown [Populus trichocarpa] gi|222873242|gb|EEF10373.1| predicted protein [Populus trichocarpa]

 Score =  584 bits (1506), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 276/353 (78%), Positives = 311/353 (88%)

Query: 1   MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYN 60
           MTE+AEAL+EKMKELNLG SSM +NSLMTLY K G PE+IPAIIQEMKA ++MPDSYTYN
Sbjct: 138 MTEEAEALIEKMKELNLGLSSMSYNSLMTLYTKVGQPERIPAIIQEMKADNVMPDSYTYN 197

Query: 61  VWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELEN 120
           VWMRALAAVNDISG ERVIEEMKRDGRVAA+WTT+SNLASIYV+AG F+KAE+ALKELE 
Sbjct: 198 VWMRALAAVNDISGVERVIEEMKRDGRVAANWTTYSNLASIYVDAGYFDKAEKALKELEK 257

Query: 121 RNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPG 180
            NA++DL A+QFLITLYG+TG L EVYRIWRSLRLAFP TANISYLNMIQVLVNLKD+PG
Sbjct: 258 INANKDLFAFQFLITLYGRTGKLIEVYRIWRSLRLAFPKTANISYLNMIQVLVNLKDVPG 317

Query: 181 AEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSD 240
           AEKCF+EWESGC+TYDIRV NV+I AYAKEG ++ AEELKERARRRGA PN+KTWEIF D
Sbjct: 318 AEKCFREWESGCSTYDIRVANVVISAYAKEGLVDKAEELKERARRRGAKPNSKTWEIFCD 377

Query: 241 YYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILK 300
           YYL+NGD+KL VDC+  A+  GRG+G KWVPS   + + M HFEQ+KDVDGAE  +EILK
Sbjct: 378 YYLKNGDVKLGVDCIANAVSAGRGNGQKWVPSPVIVGSLMAHFEQQKDVDGAEDLIEILK 437

Query: 301 KAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLLEAICVE 353
           KAVDD+ VEVFE LIRTYAAAGR S +M RRLKME VEVS+  +KLLEAICVE
Sbjct: 438 KAVDDVAVEVFESLIRTYAAAGRKSQLMRRRLKMENVEVSDDCQKLLEAICVE 490

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526773|ref|XP_003531991.1| PREDICTED: pentatricopeptide repeat-containing protein At1g60770-like [Glycine max]

 Score =  561 bits (1445), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 274/353 (77%), Positives = 300/353 (84%)

Query: 1   MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYN 60
           MTEK+E L+EKMKEL+L  SSMP+NSLMTLY K G PEKIP++IQEMKAS++M DSYTYN
Sbjct: 138 MTEKSEGLMEKMKELSLPLSSMPYNSLMTLYTKVGQPEKIPSLIQEMKASNVMLDSYTYN 197

Query: 61  VWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELEN 120
           VWMRALAAVNDISG ERV +EMKR G+V  DWTT+SNLASI+V+AGLF+KAE ALKELE 
Sbjct: 198 VWMRALAAVNDISGVERVHDEMKRGGQVTGDWTTYSNLASIFVDAGLFDKAEVALKELEK 257

Query: 121 RNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPG 180
           RNA +DL+AYQFLITLYG+TGNL EVYR+WRSLRLAFP TANISYLNMIQVLVNLKDLPG
Sbjct: 258 RNAFKDLTAYQFLITLYGRTGNLYEVYRVWRSLRLAFPKTANISYLNMIQVLVNLKDLPG 317

Query: 181 AEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSD 240
           AEKCF+EWE GC TYDIRV NV+I AY K   LE AEELKERARRRGA PNAKT EIF D
Sbjct: 318 AEKCFREWECGCPTYDIRVANVLIRAYVKLDMLEKAEELKERARRRGAKPNAKTLEIFMD 377

Query: 241 YYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILK 300
           YYL  GD KLAVD L +AI  GRG+G KWVPSS  I   MRHFEQEKDVDGAE FLEILK
Sbjct: 378 YYLLKGDFKLAVDYLNEAISMGRGNGEKWVPSSRIISIMMRHFEQEKDVDGAEEFLEILK 437

Query: 301 KAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLLEAICVE 353
           K+V+  GVEVFE LIRTYAAAGR S  M RRLKME VEVSE ++KLLEAI VE
Sbjct: 438 KSVESPGVEVFESLIRTYAAAGRISSAMQRRLKMENVEVSEGTQKLLEAISVE 490

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297837423|ref|XP_002886593.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297332434|gb|EFH62852.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  532 bits (1371), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 244/353 (69%), Positives = 295/353 (83%)

Query: 1   MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYN 60
           +TEKAE LL KMKELN+  SSM +NSLMTLY KTG  EK+PA+IQE+KA ++MPDSYTYN
Sbjct: 138 LTEKAEGLLNKMKELNITPSSMSYNSLMTLYTKTGQTEKVPAMIQELKAENVMPDSYTYN 197

Query: 61  VWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELEN 120
           VWMRALAA NDISG ERVIEEM RDGRVA DWTT+SN+ASIYV+AGL +KAE+AL+ELE 
Sbjct: 198 VWMRALAATNDISGVERVIEEMNRDGRVAPDWTTYSNMASIYVDAGLSQKAEKALQELEM 257

Query: 121 RNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPG 180
           +N  RD +AYQFLITLYG+ G L+EVYRIWRSLRLA P T+N++YLNMIQVLV L DLPG
Sbjct: 258 KNTQRDFTAYQFLITLYGRLGKLTEVYRIWRSLRLAMPKTSNVAYLNMIQVLVKLNDLPG 317

Query: 181 AEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSD 240
           AE  FKEW++ C+TYDIR+ NV+IGAYAKEG +E A+ELKE+A RRG   NAKTWEIF D
Sbjct: 318 AETLFKEWQANCSTYDIRIVNVLIGAYAKEGLIEKAKELKEKAPRRGGKANAKTWEIFMD 377

Query: 241 YYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILK 300
           YY+++GDM  A++C+ KA+  G+GDGGKW+PS ET+RT M +FEQ+KDV+GAE  LEILK
Sbjct: 378 YYVKSGDMAHALECMSKAVSIGKGDGGKWIPSQETVRTLMSYFEQKKDVNGAENLLEILK 437

Query: 301 KAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLLEAICVE 353
              D++G E+FE LIRTYAAAG++ P M RRLKME VEV+E +KKLL+ +  E
Sbjct: 438 NGTDNIGAEIFESLIRTYAAAGKSHPAMRRRLKMENVEVNEVTKKLLDEVSQE 490

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219808|ref|NP_176276.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75097554|sp|O22714.1|PPR86_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g60770 gi|2462744|gb|AAB71963.1| Hypothetical protein [Arabidopsis thaliana] gi|27754491|gb|AAO22693.1| unknown protein [Arabidopsis thaliana] gi|28393975|gb|AAO42395.1| unknown protein [Arabidopsis thaliana] gi|332195609|gb|AEE33730.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  529 bits (1362), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 242/351 (68%), Positives = 294/351 (83%)

Query: 1   MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYN 60
           +TEKAE LL KMKELN+  SSM +NSLMTLY KTG  EK+PA+IQE+KA ++MPDSYTYN
Sbjct: 138 LTEKAEGLLNKMKELNITPSSMSYNSLMTLYTKTGETEKVPAMIQELKAENVMPDSYTYN 197

Query: 61  VWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELEN 120
           VWMRALAA NDISG ERVIEEM RDGRVA DWTT+SN+ASIYV+AGL +KAE+AL+ELE 
Sbjct: 198 VWMRALAATNDISGVERVIEEMNRDGRVAPDWTTYSNMASIYVDAGLSQKAEKALQELEM 257

Query: 121 RNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPG 180
           +N  RD +AYQFLITLYG+ G L+EVYRIWRSLRLA P T+N++YLNMIQVLV L DLPG
Sbjct: 258 KNTQRDFTAYQFLITLYGRLGKLTEVYRIWRSLRLAIPKTSNVAYLNMIQVLVKLNDLPG 317

Query: 181 AEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSD 240
           AE  FKEW++ C+TYDIR+ NV+IGAYA+EG ++ A ELKE+A RRG   NAKTWEIF D
Sbjct: 318 AETLFKEWQANCSTYDIRIVNVLIGAYAQEGLIQKANELKEKAPRRGGKLNAKTWEIFMD 377

Query: 241 YYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILK 300
           YY+++GDM  A++C+ KA+  G+GDGGKW+PS ET+R  M +FEQ+KDV+GAE  LEILK
Sbjct: 378 YYVKSGDMARALECMSKAVSIGKGDGGKWLPSPETVRALMSYFEQKKDVNGAENLLEILK 437

Query: 301 KAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLLEAIC 351
              D++G E+FEPLIRTYAAAG++ P M RRLKME VEV+EA+KKLL+ + 
Sbjct: 438 NGTDNIGAEIFEPLIRTYAAAGKSHPAMRRRLKMENVEVNEATKKLLDEVS 488

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434959|ref|XP_004135263.1| PREDICTED: pentatricopeptide repeat-containing protein At1g60770-like [Cucumis sativus] gi|449478594|ref|XP_004155363.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g60770-like [Cucumis sativus]

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 253/353 (71%), Positives = 286/353 (81%), Gaps = 3/353 (0%)

Query: 1   MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYN 60
           +TEKAEAL EK+KELNL  + +P+NSLMTLY+K G P+K+  IIQEMKA+++  D YTY 
Sbjct: 140 LTEKAEALFEKIKELNLPVTPVPYNSLMTLYSKIGRPDKVCTIIQEMKAANVTFDPYTYI 199

Query: 61  VWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELEN 120
           VWMRALAA+NDISG ERVI+EMKRDG V  DWTT+SNLASIYV A +FEKA +ALK+LE 
Sbjct: 200 VWMRALAALNDISGVERVIDEMKRDG-VKGDWTTYSNLASIYVNANMFEKAAKALKDLEK 258

Query: 121 RNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPG 180
            N  RDL  +QFLITLYGQ G+L+EVYR+WRSLRLAFP TANISYLNMIQ L  LKDLPG
Sbjct: 259 INTRRDLIGFQFLITLYGQIGDLTEVYRVWRSLRLAFPRTANISYLNMIQTLTKLKDLPG 318

Query: 181 AEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSD 240
           AEKCFKEWESG  TYDIR+ N +IGAY K G LE A  LKERA RRGA PNAKTWE F +
Sbjct: 319 AEKCFKEWESGSPTYDIRIPNALIGAYTKGGLLEKAMALKERALRRGARPNAKTWEFFLN 378

Query: 241 YYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILK 300
           YYL+NGD KLA DC+ KAI  G+GD GKW+PS E I++FM HFEQEKDVDGAE FLEI+K
Sbjct: 379 YYLKNGDFKLAGDCVAKAI--GKGDRGKWIPSPEIIKSFMSHFEQEKDVDGAESFLEIVK 436

Query: 301 KAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLLEAICVE 353
           K VD L  EVFE LIRTY+AAGRTS  M RRLKME VEVSEA KKLL  I +E
Sbjct: 437 KTVDSLESEVFESLIRTYSAAGRTSSSMSRRLKMENVEVSEACKKLLNKISIE 489

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083491|emb|CBI23460.3| unnamed protein product [Vitis vinifera]

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 245/353 (69%), Positives = 273/353 (77%), Gaps = 45/353 (12%)

Query: 1   MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYN 60
           +TEKAEAL+E+MKEL LG SSMP+NSLMTLY K G PEKIP IIQE+K+  IMPDSYTYN
Sbjct: 137 LTEKAEALMERMKELKLGLSSMPYNSLMTLYTKIGQPEKIPTIIQELKSLDIMPDSYTYN 196

Query: 61  VWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELEN 120
           +WMRALAAVNDISG ERVIEEMKRDGRVA+DWTT+SNLASIYV+AG+FEKAE+ALKELE 
Sbjct: 197 IWMRALAAVNDISGVERVIEEMKRDGRVASDWTTYSNLASIYVDAGVFEKAEKALKELEK 256

Query: 121 RNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPG 180
           RNA RDL+A+QFLITLYG+ GNL EVYR+WRSLRLAFP TAN+SYLNMIQVLVNLKDLPG
Sbjct: 257 RNACRDLTAFQFLITLYGRIGNLLEVYRVWRSLRLAFPKTANVSYLNMIQVLVNLKDLPG 316

Query: 181 AEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSD 240
           AEKCF+EWESGC+ YDIRV N +IGAYAK+G LE AEELKE ARRRGA PNAKTWEIF  
Sbjct: 317 AEKCFREWESGCSIYDIRVANALIGAYAKDGLLEKAEELKEHARRRGAKPNAKTWEIFLA 376

Query: 241 YYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILK 300
           Y+L+N +MK AVDC+  AI T                                       
Sbjct: 377 YHLKNREMKQAVDCVANAIST--------------------------------------- 397

Query: 301 KAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLLEAICVE 353
                 GVEVFE LIR YAAAGRTSPVM RRLKME VEVS++ KKLLE + VE
Sbjct: 398 ------GVEVFESLIRIYAAAGRTSPVMRRRLKMENVEVSDSCKKLLEEVSVE 444

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343172214|gb|AEL98811.1| pentatricopeptide repeat-containing protein, partial [Silene latifolia]

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 205/292 (70%), Positives = 247/292 (84%)

Query: 1   MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYN 60
           + +KAEAL+EKMKEL L  ++M +NSLMTLY+KTG PEK+PA++QEMKAS IM  +YTYN
Sbjct: 68  IPDKAEALMEKMKELGLPITAMSYNSLMTLYSKTGLPEKVPALVQEMKASDIMLQTYTYN 127

Query: 61  VWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELEN 120
           VWMRALAAV DI G ERV++EMKRDGRVA DWTT+SNLASIYVE+ +FEKAE ALKELE 
Sbjct: 128 VWMRALAAVKDIYGVERVLDEMKRDGRVAEDWTTYSNLASIYVESKMFEKAENALKELEK 187

Query: 121 RNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPG 180
           RN  +DLS YQFL+TLYG+TGNL EVYR+WRSLRLAFP T N++YLNMIQ LV LKDL G
Sbjct: 188 RNTSQDLSPYQFLLTLYGKTGNLIEVYRVWRSLRLAFPKTPNVAYLNMIQRLVTLKDLKG 247

Query: 181 AEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSD 240
           AEKCF +WES C  YDIR+ NV++GAY K+G L+ A+ELK+RA +RGA PNAKTWEIF +
Sbjct: 248 AEKCFADWESSCTNYDIRIANVLMGAYIKDGLLQQAKELKKRACKRGAKPNAKTWEIFLE 307

Query: 241 YYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGA 292
           +YL+ G++KLAVDC+E+A+  GRGDG KWVPSS+ + + M HFEQ KDVDGA
Sbjct: 308 HYLKAGEVKLAVDCVERAVAIGRGDGSKWVPSSKVVNSIMGHFEQSKDVDGA 359

Source: Silene latifolia

Species: Silene latifolia

Genus: Silene

Family: Caryophyllaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343172216|gb|AEL98812.1| pentatricopeptide repeat-containing protein, partial [Silene latifolia]

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 203/292 (69%), Positives = 246/292 (84%)

Query: 1   MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYN 60
           + +KAEAL+EKMKEL L  ++M +NSLMTLY+KTG PEK+PA++QEMKAS IM  +YTYN
Sbjct: 68  IPDKAEALMEKMKELGLPITAMSYNSLMTLYSKTGLPEKVPALVQEMKASDIMLQTYTYN 127

Query: 61  VWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELEN 120
           VWMRALAAV DI G ERV++EMKRDGRVA DWTT+SNLASIYVE+ +F+KAE ALKELE 
Sbjct: 128 VWMRALAAVKDIYGVERVLDEMKRDGRVAEDWTTYSNLASIYVESKMFDKAENALKELEK 187

Query: 121 RNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPG 180
           RN  R+LS YQFL+TLYG+TGNL EVYR+WRSLRLAFP T N++YLNMIQ LV LKDL G
Sbjct: 188 RNTSRELSPYQFLLTLYGKTGNLIEVYRLWRSLRLAFPKTPNVAYLNMIQRLVTLKDLKG 247

Query: 181 AEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSD 240
           AEKCF +WES C  YDIR+ NV++GAY K+G L+ A+ELK+RA +RGA PNAKTWEIF +
Sbjct: 248 AEKCFADWESSCTNYDIRIANVLMGAYIKDGSLQQAKELKKRACKRGAKPNAKTWEIFLE 307

Query: 241 YYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGA 292
           +YL+ G++KLAVDC+E+A+  GRGDG KWVPS+  + + M HFEQ KDVDGA
Sbjct: 308 HYLKAGEVKLAVDCVERAVAIGRGDGSKWVPSTNVVNSIMGHFEQSKDVDGA 359

Source: Silene latifolia

Species: Silene latifolia

Genus: Silene

Family: Caryophyllaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	353
TAIR|locus:2036586	491	AT1G60770 [Arabidopsis thalian	0.937	0.674	0.691	9.6e-128
TAIR|locus:2204808	537	AT1G02370 "AT1G02370" [Arabido	0.937	0.616	0.406	3.5e-68
TAIR|locus:2141360	502	AT4G01990 [Arabidopsis thalian	0.923	0.649	0.419	5.8e-66
TAIR|locus:2140220	532	AT4G02820 "AT4G02820" [Arabido	0.915	0.607	0.328	3.6e-50
TAIR|locus:2204793	524	AT1G02150 [Arabidopsis thalian	0.796	0.536	0.349	3.7e-48
TAIR|locus:2146390	491	AT5G27460 "AT5G27460" [Arabido	0.883	0.635	0.311	3.4e-45
TAIR|locus:504955535	492	AT4G21705 "AT4G21705" [Arabido	0.929	0.666	0.297	3.5e-43
TAIR|locus:2051379	490	AT2G20710 [Arabidopsis thalian	0.781	0.563	0.306	1.8e-39
TAIR|locus:2010459	566	AT1G28020 "AT1G28020" [Arabido	0.889	0.554	0.252	1.2e-25
TAIR|locus:2184807	409	AT5G09450 "AT5G09450" [Arabido	0.546	0.471	0.302	5.8e-24

TAIR|locus:2036586 AT1G60770 [Arabidopsis thaliana (taxid:3702)]

 Score = 1254 (446.5 bits), Expect = 9.6e-128, P = 9.6e-128
 Identities = 229/331 (69%), Positives = 279/331 (84%)

Query:    20 SSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVI 79
             SSM +NSLMTLY KTG  EK+PA+IQE+KA ++MPDSYTYNVWMRALAA NDISG ERVI
Sbjct:   157 SSMSYNSLMTLYTKTGETEKVPAMIQELKAENVMPDSYTYNVWMRALAATNDISGVERVI 216

Query:    80 EEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQ 139
             EEM RDGRVA DWTT+SN+ASIYV+AGL +KAE+AL+ELE +N  RD +AYQFLITLYG+
Sbjct:   217 EEMNRDGRVAPDWTTYSNMASIYVDAGLSQKAEKALQELEMKNTQRDFTAYQFLITLYGR 276

Query:   140 TGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRV 199
              G L+EVYRIWRSLRLA P T+N++YLNMIQVLV L DLPGAE  FKEW++ C+TYDIR+
Sbjct:   277 LGKLTEVYRIWRSLRLAIPKTSNVAYLNMIQVLVKLNDLPGAETLFKEWQANCSTYDIRI 336

Query:   200 TNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAI 259
              NV+IGAYA+EG ++ A ELKE+A RRG   NAKTWEIF DYY+++GDM  A++C+ KA+
Sbjct:   337 VNVLIGAYAQEGLIQKANELKEKAPRRGGKLNAKTWEIFMDYYVKSGDMARALECMSKAV 396

Query:   260 DTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYA 319
               G+GDGGKW+PS ET+R  M +FEQ+KDV+GAE  LEILK   D++G E+FEPLIRTYA
Sbjct:   397 SIGKGDGGKWLPSPETVRALMSYFEQKKDVNGAENLLEILKNGTDNIGAEIFEPLIRTYA 456

Query:   320 AAGRTSPVMLRRLKMEKVEVSEASKKLLEAI 350
             AAG++ P M RRLKME VEV+EA+KKLL+ +
Sbjct:   457 AAGKSHPAMRRRLKMENVEVNEATKKLLDEV 487

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2204808 AT1G02370 "AT1G02370" [Arabidopsis thaliana (taxid:3702)]

 Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
 Identities = 135/332 (40%), Positives = 200/332 (60%)

Query:    20 SSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVI 79
             +S+PFN++M++Y +   PEK+P ++  MK   I P   TY++WM++  ++ND+ G E++I
Sbjct:   206 NSLPFNNMMSMYMRLSQPEKVPVLVDAMKQRGISPCGVTYSIWMQSCGSLNDLDGLEKII 265

Query:    80 EEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQ 139
             +EM +D      W TFSNLA+IY +AGL+EKA+ ALK +E +    +  ++ FL++LY  
Sbjct:   266 DEMGKDSEAKTTWNTFSNLAAIYTKAGLYEKADSALKSMEEKMNPNNRDSHHFLMSLYAG 325

Query:   140 TGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRV 199
                  EVYR+W SL+ A P   N+SYL M+Q +  L DL G +K F EWES C  YD+R+
Sbjct:   326 ISKGPEVYRVWESLKKARPEVNNLSYLVMLQAMSKLGDLDGIKKIFTEWESKCWAYDMRL 385

Query:   200 TNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAI 259
              N+ I  Y K    E AE++ + A ++   P +K  ++   + L N    LA+  LE A+
Sbjct:   386 ANIAINTYLKGNMYEEAEKILDGAMKKSKGPFSKARQLLMIHLLENDKADLAMKHLEAAV 445

Query:   260 DTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYA 319
                  +  +W  SSE +  F  HFE+ KDVDGAE F +IL      L  E    LI+TYA
Sbjct:   446 SDSAENKDEWGWSSELVSLFFLHFEKAKDVDGAEDFCKILSNW-KPLDSETMTFLIKTYA 504

Query:   320 AAGRTSPVMLRRLKMEKVEVSEASKKLLEAIC 351
             AA +TSP M  RL  +++EVSE  + LL+ +C
Sbjct:   505 AAEKTSPDMRERLSQQQIEVSEEIQDLLKTVC 536

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

TAIR|locus:2141360 AT4G01990 [Arabidopsis thaliana (taxid:3702)]

 Score = 671 (241.3 bits), Expect = 5.8e-66, P = 5.8e-66
 Identities = 140/334 (41%), Positives = 200/334 (59%)

Query:    20 SSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVI 79
             +S+PFN+LM +Y   G PEK+PA++  MK  SI P   TY++W+++  ++ D+ G E+V+
Sbjct:   174 NSLPFNNLMAMYMGLGQPEKVPALVVAMKEKSITPCDITYSMWIQSCGSLKDLDGVEKVL 233

Query:    80 EEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDL-SAYQFLITLYG 138
             +EMK +G     W TF+NLA+IY++ GL+ KAE ALK LEN N + D+   Y FLI LY 
Sbjct:   234 DEMKAEGEGIFSWNTFANLAAIYIKVGLYGKAEEALKSLEN-NMNPDVRDCYHFLINLYT 292

Query:   139 QTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIR 198
                N SEVYR+W  L+  +PN  N SYL M++ L  L D+ G +K F EWES C TYD+R
Sbjct:   293 GIANASEVYRVWDLLKKRYPNVNNSSYLTMLRALSKLDDIDGVKKVFAEWESTCWTYDMR 352

Query:   199 VTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKA 258
             + NV I +Y K+   E AE +   A ++     +K  ++   + L+N    LA+   E A
Sbjct:   353 MANVAISSYLKQNMYEEAEAVFNGAMKKCKGQFSKARQLLMMHLLKNDQADLALKHFEAA 412

Query:   259 I-DTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRT 317
             + D  +     W  SSE I +F  HFE+ KDVDGAE F + L K    L  E +  L++T
Sbjct:   413 VLDQDKN----WTWSSELISSFFLHFEEAKDVDGAEEFCKTLTKW-SPLSSETYTLLMKT 467

Query:   318 YAAAGRTSPVMLRRLKMEKVEVSEASKKLLEAIC 351
             Y AAG+  P M +RL+ + + V E  + LL  IC
Sbjct:   468 YLAAGKACPDMKKRLEEQGILVDEEQECLLSKIC 501

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

TAIR|locus:2140220 AT4G02820 "AT4G02820" [Arabidopsis thaliana (taxid:3702)]

 Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
 Identities = 109/332 (32%), Positives = 189/332 (56%)

Query:    18 GF--SSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGA 75
             GF  S +P+N ++++Y   G  EK+P +I+E+K  +  PD  TYN+W+ A A+ ND+ GA
Sbjct:   192 GFLKSCLPYNHMLSMYISRGQFEKVPVLIKELKIRT-SPDIVTYNLWLTAFASGNDVEGA 250

Query:    76 ERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLIT 135
             E+V  + K + ++  DW T+S L ++Y +    EKA  ALKE+E   + ++  AY  LI+
Sbjct:   251 EKVYLKAKEE-KLNPDWVTYSVLTNLYAKTDNVEKARLALKEMEKLVSKKNRVAYASLIS 309

Query:   136 LYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATY 195
             L+   G+   V   W+ ++ +F    +  YL+MI  +V L +   A+  + EWES   T 
Sbjct:   310 LHANLGDKDGVNLTWKKVKSSFKKMNDAEYLSMISAVVKLGEFEQAKGLYDEWESVSGTG 369

Query:   196 DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCL 255
             D R+ N+++  Y     +   E+  ER   +G +P+  TWEI +  YL+  DM+  +DC 
Sbjct:   370 DARIPNLILAEYMNRDEVLLGEKFYERIVEKGINPSYSTWEILTWAYLKRKDMEKVLDCF 429

Query:   256 EKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLI 315
              KAID+ +    KW  +   ++   +  E++ +V GAE  + +L+KA   +  +++  L+
Sbjct:   430 GKAIDSVK----KWTVNVRLVKGACKELEEQGNVKGAEKLMTLLQKA-GYVNTQLYNSLL 484

Query:   316 RTYAAAGRTSPVMLRRLKMEKVEVSEASKKLL 347
             RTYA AG  + ++  R+  + VE+ E +K+L+
Sbjct:   485 RTYAKAGEMALIVEERMAKDNVELDEETKELI 516

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

TAIR|locus:2204793 AT1G02150 [Arabidopsis thaliana (taxid:3702)]

 Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
 Identities = 99/283 (34%), Positives = 161/283 (56%)

Query:    22 MPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEE 81
             +PFN +MTLY      +K+ A++ EMK   I  D Y+YN+W+ +  ++  +   E V ++
Sbjct:   205 LPFNVMMTLYMNLREYDKVDAMVFEMKQKDIRLDIYSYNIWLSSCGSLGSVEKMELVYQQ 264

Query:    82 MKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTG 141
             MK D  +  +WTTFS +A++Y++ G  EKAE AL+++E R   R+   Y +L++LYG  G
Sbjct:   265 MKSDVSIYPNWTTFSTMATMYIKMGETEKAEDALRKVEARITGRNRIPYHYLLSLYGSLG 324

Query:   142 NLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTN 201
             N  E+YR+W   +   P+  N+ Y  ++  LV + D+ GAEK ++EW    ++YD R+ N
Sbjct:   325 NKKELYRVWHVYKSVVPSIPNLGYHALVSSLVRMGDIEGAEKVYEEWLPVKSSYDPRIPN 384

Query:   202 VMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDT 261
             +++ AY K  +LE AE L +     G  P++ TWEI +  + R   +  A+ CL  A  +
Sbjct:   385 LLMNAYVKNDQLETAEGLFDHMVEMGGKPSSSTWEILAVGHTRKRCISEALTCLRNAF-S 443

Query:   262 GRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD 304
               G    W P    +  F +  E+E DV   E  LE+L+++ D
Sbjct:   444 AEGSSN-WRPKVLMLSGFFKLCEEESDVTSKEAVLELLRQSGD 485

GO:0005739 "mitochondrion" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

TAIR|locus:2146390 AT5G27460 "AT5G27460" [Arabidopsis thaliana (taxid:3702)]

 Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
 Identities = 98/315 (31%), Positives = 167/315 (53%)

Query:    23 PFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEM 82
             PFN +M LY  +G  EK+  ++  MK + I  +  +YN+WM A   V+ ++  E V +EM
Sbjct:   180 PFNEMMKLYEASGQYEKVVMVVSMMKGNKIPRNVLSYNLWMNACCEVSGVAAVETVYKEM 239

Query:    83 KRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGN 142
               D  V   W++   LA++Y+++G  EKA   L++ E      +   Y FLITLY   GN
Sbjct:   240 VGDKSVEVGWSSLCTLANVYIKSGFDEKARLVLEDAEKMLNRSNRLGYFFLITLYASLGN 299

Query:   143 LSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNV 202
                V R+W   +      + ++Y+ ++  LV   DL  AE+ F EWE+ C  YD+RV+NV
Sbjct:   300 KEGVVRLWEVSKSVCGRISCVNYICVLSSLVKTGDLEEAERVFSEWEAQCFNYDVRVSNV 359

Query:   203 MIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG 262
             ++GAY + G +  AE L      RG  PN KTWEI  + +++  +M+ A+D + +     
Sbjct:   360 LLGAYVRNGEIRKAESLHGCVLERGGTPNYKTWEILMEGWVKCENMEKAIDAMHQVFVLM 419

Query:   263 RGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAG 322
             R     W PS   +     +FE+E+ ++ A  ++  L + +    + ++  L+R +  A 
Sbjct:   420 RRC--HWRPSHNIVMAIAEYFEKEEKIEEATAYVRDLHR-LGLASLPLYRLLLRMHEHAK 476

Query:   323 RTSPVMLRRLKMEKV 337
             R +  +   +K++K+
Sbjct:   477 RPAYDIYEMMKLDKL 491

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:504955535 AT4G21705 "AT4G21705" [Arabidopsis thaliana (taxid:3702)]

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 99/333 (29%), Positives = 167/333 (50%)

Query:    18 GF--SSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGA 75
             GF  SS+ +N++M LY   G  EK+P +++EMK  ++ PD+Y+Y + + A  A+ D+   
Sbjct:   156 GFVTSSLTYNNIMCLYTNIGQHEKVPKVLEEMKEENVAPDNYSYRICINAFGAMYDLERI 215

Query:    76 ERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLIT 135
                + +M+R   +  DW T++  A  Y++ G  ++A   LK  ENR   +D   Y  LIT
Sbjct:   216 GGTLRDMERRQDITMDWNTYAVAAKFYIDGGDCDRAVELLKMSENRLEKKDGEGYNHLIT 275

Query:   136 LYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATY 195
             LY + G   EV R+W   +       N  YL ++Q LV +  L  AE+   EW+S    Y
Sbjct:   276 LYARLGKKIEVLRLWDLEKDVCKRRINQDYLTVLQSLVKIDALVEAEEVLTEWKSSGNCY 335

Query:   196 DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCL 255
             D RV N +I  Y  +   E AE + E   RRG     ++WE+ +  Y   G ++ A  C+
Sbjct:   336 DFRVPNTVIRGYIGKSMEEKAEAMLEDLARRGKATTPESWELVATAYAEKGTLENAFKCM 395

Query:   256 EKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLI 315
             + A+    G   KW P    + + +     E  +   E F+  L+  +  +  +++  L+
Sbjct:   396 KTALGVEVGSR-KWRPGLTLVTSVLSWVGDEGSLKEVESFVASLRNCIG-VNKQMYHALV 453

Query:   316 RT-YAAAGRTSPVMLRRLKMEKVEVSEASKKLL 347
             +      GR    +L+R+K +K+E+ E +  +L
Sbjct:   454 KADIREGGRNIDTLLQRMKDDKIEIDEETTVIL 486

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2051379 AT2G20710 [Arabidopsis thaliana (taxid:3702)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 86/281 (30%), Positives = 157/281 (55%)

Query:    22 MPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEE 81
             +P+N ++ LY +TG    +  +++EM+  ++ PD +T N  + A + V+D+ G E+ +  
Sbjct:   175 LPYNVMLNLYVRTGKYTMVEKLLREMEDETVKPDIFTVNTRLHAYSVVSDVEGMEKFLMR 234

Query:    82 MKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENR-NAHRDLSAYQFLITLYGQT 140
              + D  +  DW T+++ A+ Y++AGL EKA   L++ E   NA +   AY+ L++ YG  
Sbjct:   235 CEADQGLHLDWRTYADTANGYIKAGLTEKALEMLRKSEQMVNAQKRKHAYEVLMSFYGAA 294

Query:   141 GNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVT 200
             G   EVYR+W SL        N  Y+++I  L+ + D+   EK  +EWE+G + +DIR+ 
Sbjct:   295 GKKEEVYRLW-SLYKELDGFYNTGYISVISALLKMDDIEEVEKIMEEWEAGHSLFDIRIP 353

Query:   201 NVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAID 260
             +++I  Y K+G +E AEE+     ++    +  TWE  +  Y   G M+ AV+  ++AI+
Sbjct:   354 HLLITGYCKKGMMEKAEEVVNILVQKWRVEDTSTWERLALGYKMAGKMEKAVEKWKRAIE 413

Query:   261 TGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKK 301
               +  G  W P    + + + + E ++D++G    L +L +
Sbjct:   414 VSK-PG--WRPHQVVLMSCVDYLEGQRDMEGLRKILRLLSE 451

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

TAIR|locus:2010459 AT1G28020 "AT1G28020" [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 1.2e-25, P = 1.2e-25
 Identities = 83/329 (25%), Positives = 155/329 (47%)

Query:    22 MPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEE 81
             +P+N++M+LY+   + EK+  ++ EMK + +  D+ T N  ++  +AV D++  E+ + +
Sbjct:   174 VPYNAMMSLYSALKNREKVEELLLEMKDNDVEADNVTVNNVLKLYSAVCDVTEMEKFLNK 233

Query:    82 MKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDL-SAYQFLITLYGQT 140
              +    +  +W T  ++A  Y+ A    KA + L+  E     + L SAY  L+ LYG+ 
Sbjct:   234 WEGIHGIKLEWHTTLDMAKAYLRARSSGKAMKMLRLTEQLVDQKSLKSAYDHLMKLYGEA 293

Query:   141 GNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVT 200
             GN  EV R+W+  +       N  Y  +I+ L+ + D+ GAE+ +K WES    +D R+ 
Sbjct:   294 GNREEVLRVWKLYKSKIGERDNNGYRTVIRSLLKVDDIVGAEEIYKVWESLPLEFDHRIP 353

Query:   201 NVMIGAYAKEGRLENAEEL---KERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEK 257
              ++   Y   G  E AE+L   K    RR   P     E + D  ++  D+K  +  L  
Sbjct:   354 TMLASGYRDRGMTEKAEKLMNSKTIKDRRMNKPVTPLLEQWGDQ-MKPSDLKCLIKNLRD 412

Query:   258 AIDTGRG-DGGKWVPSSETIRTFMRHF-------EQEKDVDGAEGFLEILKKAVDDLGVE 309
             +    +     +W+   +    ++  +       E    ++ AE + E + + + D  V 
Sbjct:   413 SKQFSKALQVSEWMGEKQVCNLYLEDYAARLYLTENVLGLEEAEKYFENIPENMKDYSVY 472

Query:   310 VFEPLIRTYAAAGRTSPVMLRRLKMEKVE 338
             V   L+ +YA + +    M+  +  E  E
Sbjct:   473 V--ALLSSYAKSDKNLGNMVDEILREMEE 499

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2184807 AT5G09450 "AT5G09450" [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 5.8e-24, P = 5.8e-24
 Identities = 59/195 (30%), Positives = 100/195 (51%)

Query:    19 FSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERV 78
             F ++ +N +MTLY   G  EK+P +I+ +K   + PD +TYN+W+ + AA  +I    ++
Sbjct:   190 FGAITYNEMMTLYMSVGQVEKVPEVIEVLKQKKVSPDIFTYNLWLSSCAATFNIDELRKI 249

Query:    79 IEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALK-ELENRNAHRDLSAYQFLITLY 137
             +EEM+ D      W  + +L SIY+ +     AE  L  E E   + R+   Y FL+ L+
Sbjct:   250 LEEMRHDASSNEGWVRYIDLTSIYINSSRVTNAESTLPVEAEKSISQREWITYDFLMILH 309

Query:   138 GQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEW-ESGCATYD 196
                GN   + +IW+SLR      ++ SY+ ++   + L  L  AE+   +W ES    +D
Sbjct:   310 TGLGNKVMIDQIWKSLRNTNQILSSRSYICVLSSYLMLGHLREAEEIIHQWKESKTTEFD 369

Query:   197 IRVTNVMIGAYAKEG 211
                   ++ A+   G
Sbjct:   370 ASACLRILNAFRDVG 384

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O22714	PPR86_ARATH	No assigned EC number	0.6894	0.9915	0.7128	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	353
pfam13041	50	pfam13041, PPR_2, PPR repeat family	8e-08
pfam13041	50	pfam13041, PPR_2, PPR repeat family	3e-05
pfam13041	50	pfam13041, PPR_2, PPR repeat family	8e-05
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	4e-04
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	0.001
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	0.001
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	0.001

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 47.8 bits (115), Expect = 8e-08
 Identities = 15/44 (34%), Positives = 24/44 (54%)

Query: 24 FNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALA 67
          +N+L+  Y K G  E+   +  EMK   I P+ YTY++ +  L 
Sbjct: 6  YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 40.5 bits (96), Expect = 3e-05
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 54 PDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNL 98
          PD  TYN  +        +  A ++  EMK+ G +  +  T+S L
Sbjct: 1  PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRG-IKPNVYTYSIL 44

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 39.3 bits (93), Expect = 8e-05
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 199 VT-NVMIGAYAKEGRLENAEELKERARRRGADPNAKT 234
           VT N +I  Y K+G++E A +L    ++RG  PN  T
Sbjct: 4   VTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYT 40

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 42.2 bits (99), Expect = 4e-04
 Identities = 21/87 (24%), Positives = 43/87 (49%)

Query: 1   MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYN 60
             +KA  +L+  ++  +   ++ ++SLM   +   + +K   + +++K+  + P   T N
Sbjct: 664 DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMN 723

Query: 61  VWMRALAAVNDISGAERVIEEMKRDGR 87
             + AL   N +  A  V+ EMKR G 
Sbjct: 724 ALITALCEGNQLPKALEVLSEMKRLGL 750

Length = 1060

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 21/84 (25%), Positives = 40/84 (47%)

Query: 3   EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVW 62
           +KA  L E +K + L  +    N+L+T   +     K   ++ EMK   + P++ TY++ 
Sbjct: 701 KKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760

Query: 63  MRALAAVNDISGAERVIEEMKRDG 86
           + A    +D      ++ + K DG
Sbjct: 761 LVASERKDDADVGLDLLSQAKEDG 784

Length = 1060

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 35.6 bits (83), Expect = 0.001
 Identities = 13/31 (41%), Positives = 21/31 (67%)

Query: 24 FNSLMTLYAKTGHPEKIPAIIQEMKASSIMP 54
          +N+L+   AK G P+   A+++EMKAS + P
Sbjct: 4  YNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 40.2 bits (94), Expect = 0.001
 Identities = 62/258 (24%), Positives = 111/258 (43%), Gaps = 34/258 (13%)

Query: 11  KMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVN 70
           KM E +L FS   +N L+  YAK G+ ++   +   M  + + PD YT+   +R    + 
Sbjct: 146 KMPERDL-FS---WNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIP 201

Query: 71  DISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAY 130
           D++    V   + R G    D    + L ++YV+ G    A    + + +R   RD  ++
Sbjct: 202 DLARGREVHAHVVRFG-FELDVDVVNALITMYVKCGDVVSA----RLVFDRMPRRDCISW 256

Query: 131 QFLITLYGQTGNLSEVYRIWRSLRLAF--PNTANISYLNMIQVLVNLKDLPGAEKCFKEW 188
             +I+ Y + G   E   ++ ++R     P+      L  I  +++  +L G E+  +E 
Sbjct: 257 NAMISGYFENGECLEGLELFFTMRELSVDPD------LMTITSVISACELLGDERLGREM 310

Query: 189 ES-----GCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYL 243
                  G A  D+ V N +I  Y   G    AE++  R   +    +A +W      Y 
Sbjct: 311 HGYVVKTGFAV-DVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYE 365

Query: 244 RNGDMKLAVDCLEKAIDT 261
           +NG         +KA++T
Sbjct: 366 KNG-------LPDKALET 376

Length = 857

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	353
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.95
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.95
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.94
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.94
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.92
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.9
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.89
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.88
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.86
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.86
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.84
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.84
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.83
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.82
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.79
PRK14574	822	hmsH outer membrane protein; Provisional	99.78
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.77
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.76
PRK14574	822	hmsH outer membrane protein; Provisional	99.76
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.76
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.74
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.74
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.74
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.73
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.73
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.72
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.71
KOG1126	638	consensus DNA-binding cell division cycle control	99.71
KOG1126	638	consensus DNA-binding cell division cycle control	99.7
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.69
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.69
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.67
KOG2076	895	consensus RNA polymerase III transcription factor	99.66
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.65
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.63
PRK12370	553	invasion protein regulator; Provisional	99.61
PRK12370	553	invasion protein regulator; Provisional	99.6
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.6
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.59
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.58
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.55
KOG2003	840	consensus TPR repeat-containing protein [General f	99.54
KOG1129	478	consensus TPR repeat-containing protein [General f	99.54
KOG2076	895	consensus RNA polymerase III transcription factor	99.54
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.54
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.53
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.53
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.52
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.5
KOG1129	478	consensus TPR repeat-containing protein [General f	99.49
PF13041	50	PPR_2: PPR repeat family	99.48
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.47
PF13041	50	PPR_2: PPR repeat family	99.47
KOG2003	840	consensus TPR repeat-containing protein [General f	99.46
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.46
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.46
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.44
PRK11189	296	lipoprotein NlpI; Provisional	99.43
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.42
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.42
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.42
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.39
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.36
PRK11189	296	lipoprotein NlpI; Provisional	99.34
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.32
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.32
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.29
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.26
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.24
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.2
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.2
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.19
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.18
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.17
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.16
KOG1125	579	consensus TPR repeat-containing protein [General f	99.15
PLN02789	320	farnesyltranstransferase	99.13
PLN02789	320	farnesyltranstransferase	99.13
KOG1125	579	consensus TPR repeat-containing protein [General f	99.11
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	99.11
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.05
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.03
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	99.02
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.02
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.0
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.0
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.0
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.98
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.97
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.96
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.93
PF12854	34	PPR_1: PPR repeat	98.92
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.92
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.9
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.9
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.89
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.89
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.88
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.88
PF12854	34	PPR_1: PPR repeat	98.88
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.86
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.86
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.85
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.84
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.83
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.83
PRK04841	903	transcriptional regulator MalT; Provisional	98.83
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.82
PRK04841	903	transcriptional regulator MalT; Provisional	98.81
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.79
PRK15359	144	type III secretion system chaperone protein SscB;	98.77
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.77
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.76
PRK15359	144	type III secretion system chaperone protein SscB;	98.75
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.73
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.72
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.65
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.65
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.64
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.6
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.58
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.56
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.55
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.52
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.49
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.48
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.47
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.47
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.47
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.45
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.45
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.45
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.45
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.44
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.42
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.42
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.4
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.38
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.35
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.32
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.24
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.23
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.23
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.23
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.22
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.22
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.16
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.15
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.14
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.14
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.13
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.1
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.09
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.08
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.07
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.07
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.05
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.05
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.04
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.03
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.0
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.0
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.98
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.96
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.96
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.96
KOG0553	304	consensus TPR repeat-containing protein [General f	97.95
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.93
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.91
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.89
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.89
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.89
KOG0553	304	consensus TPR repeat-containing protein [General f	97.87
PF12688	120	TPR_5: Tetratrico peptide repeat	97.81
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.81
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.8
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.79
PF12688	120	TPR_5: Tetratrico peptide repeat	97.78
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.76
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.75
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.74
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.73
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.71
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.71
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	97.69
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.67
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.66
PRK10803	263	tol-pal system protein YbgF; Provisional	97.58
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.57
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.57
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.53
PRK10803	263	tol-pal system protein YbgF; Provisional	97.5
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.42
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.41
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.41
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.39
PF13371	73	TPR_9: Tetratricopeptide repeat	97.28
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.28
PF13371	73	TPR_9: Tetratricopeptide repeat	97.26
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.24
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.21
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.19
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.18
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.16
PRK15331	165	chaperone protein SicA; Provisional	97.11
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.09
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.89
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.86
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.83
PF13428	44	TPR_14: Tetratricopeptide repeat	96.8
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.79
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	96.77
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.77
PRK15331	165	chaperone protein SicA; Provisional	96.76
COG3898	531	Uncharacterized membrane-bound protein [Function u	96.75
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.73
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.72
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.68
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.57
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.53
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	96.51
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.48
KOG3941	406	consensus Intermediate in Toll signal transduction	96.47
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.44
PF13512	142	TPR_18: Tetratricopeptide repeat	96.27
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	96.26
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.24
COG0457	291	NrfG FOG: TPR repeat [General function prediction	96.24
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.23
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.17
KOG4555	175	consensus TPR repeat-containing protein [Function	96.07
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	96.03
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	96.02
PRK11906	458	transcriptional regulator; Provisional	95.96
smart00299	140	CLH Clathrin heavy chain repeat homology.	95.95
KOG1585	308	consensus Protein required for fusion of vesicles	95.95
PF13428	44	TPR_14: Tetratricopeptide repeat	95.95
KOG3941	406	consensus Intermediate in Toll signal transduction	95.91
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.88
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.84
PRK11906	458	transcriptional regulator; Provisional	95.82
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	95.81
KOG1585	308	consensus Protein required for fusion of vesicles	95.79
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	95.78
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.78
smart00299	140	CLH Clathrin heavy chain repeat homology.	95.75
KOG4555	175	consensus TPR repeat-containing protein [Function	95.67
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	95.65
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.64
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.6
COG4105	254	ComL DNA uptake lipoprotein [General function pred	95.55
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.5
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	95.49
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.4
COG3629	280	DnrI DNA-binding transcriptional activator of the	95.29
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.28
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.25
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	95.19
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.18
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.12
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	95.04
COG1747	711	Uncharacterized N-terminal domain of the transcrip	95.03
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	94.97
KOG1550	552	consensus Extracellular protein SEL-1 and related	94.88
KOG1941	518	consensus Acetylcholine receptor-associated protei	94.82
COG4105	254	ComL DNA uptake lipoprotein [General function pred	94.82
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	94.77
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	94.75
COG3629	280	DnrI DNA-binding transcriptional activator of the	94.74
PF13512	142	TPR_18: Tetratricopeptide repeat	94.71
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	94.53
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	94.46
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	94.14
PF13431	34	TPR_17: Tetratricopeptide repeat	94.03
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	94.01
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	93.99
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	93.98
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	93.92
KOG4234	271	consensus TPR repeat-containing protein [General f	93.65
PF13431	34	TPR_17: Tetratricopeptide repeat	93.53
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	93.52
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	93.34
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	93.32
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	93.26
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	93.21
PF13929	292	mRNA_stabil: mRNA stabilisation	93.08
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	93.0
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	92.87
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	92.76
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	92.69
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	92.56
KOG4570	418	consensus Uncharacterized conserved protein [Funct	92.53
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	92.42
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	92.31
KOG4570	418	consensus Uncharacterized conserved protein [Funct	92.21
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	92.17
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	92.03
COG1747	711	Uncharacterized N-terminal domain of the transcrip	92.02
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	91.92
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	91.91
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	91.86
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	91.84
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	91.74
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	91.07
COG4455	273	ImpE Protein of avirulence locus involved in tempe	91.05
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	90.84
PRK09687	280	putative lyase; Provisional	90.82
PF13929	292	mRNA_stabil: mRNA stabilisation	90.72
KOG4648	536	consensus Uncharacterized conserved protein, conta	90.53
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	90.46
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	90.33
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	90.21
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	90.02
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	90.0
KOG1258	577	consensus mRNA processing protein [RNA processing	89.81
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	89.76
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	89.74
COG4455	273	ImpE Protein of avirulence locus involved in tempe	89.23
KOG4234	271	consensus TPR repeat-containing protein [General f	89.02
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	88.96
PRK09687	280	putative lyase; Provisional	88.78
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	88.53
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	88.46
COG3947	361	Response regulator containing CheY-like receiver a	88.03
cd08819	88	CARD_MDA5_2 Caspase activation and recruitment dom	87.99
KOG4507	886	consensus Uncharacterized conserved protein, conta	87.84
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	87.82
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	87.54
KOG4077	149	consensus Cytochrome c oxidase, subunit Va/COX6 [E	87.49
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	87.33
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	87.31
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	87.3
KOG4648	536	consensus Uncharacterized conserved protein, conta	87.24
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	86.64
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	86.47
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	86.45
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	86.07
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	85.66
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	85.22
KOG1550	552	consensus Extracellular protein SEL-1 and related	85.11
KOG4077	149	consensus Cytochrome c oxidase, subunit Va/COX6 [E	84.72
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	84.43
PF13762	145	MNE1: Mitochondrial splicing apparatus component	84.18
PHA02875	413	ankyrin repeat protein; Provisional	84.16
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	83.69
COG5159	421	RPN6 26S proteasome regulatory complex component [	82.85
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	82.71
KOG0403	645	consensus Neoplastic transformation suppressor Pdc	82.13
PHA02875	413	ankyrin repeat protein; Provisional	81.68
KOG2471	696	consensus TPR repeat-containing protein [General f	80.97
COG5159	421	RPN6 26S proteasome regulatory complex component [	80.18

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1.9e-60  Score=436.38  Aligned_cols=345  Identities=14%  Similarity=0.178  Sum_probs=319.8

Q ss_pred             ChHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 018582            1 MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIE   80 (353)
Q Consensus         1 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~   80 (353)
                      ++++|+++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|+
T Consensus       452 ~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~  531 (1060)
T PLN03218        452 DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYG  531 (1060)
T ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--ccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCC
Q 018582           81 EMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELEN--RNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFP  158 (353)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  158 (353)
                      +|.+.| +.||..+|+.||.+|++.|++++|.++|++|..  .|+.||..+|+.++.+|++.|++++|.++|+.|.+.++
T Consensus       532 ~M~~~G-v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi  610 (1060)
T PLN03218        532 IMRSKN-VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI  610 (1060)
T ss_pred             HHHHcC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence            999988 999999999999999999999999999999976  57889999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHH
Q 018582          159 NTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIF  238 (353)
Q Consensus       159 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l  238 (353)
                      .|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.+
T Consensus       611 ~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsL  690 (1060)
T PLN03218        611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSL  690 (1060)
T ss_pred             CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHH
Q 018582          239 SDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTY  318 (353)
Q Consensus       239 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  318 (353)
                      |.+|++.|++++|.++|++|.+.|+      .||..+|+.+|.+|++.|++++|.++|++|.+.|..||..+|+.++.+|
T Consensus       691 I~ay~k~G~~eeA~~lf~eM~~~g~------~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~  764 (1060)
T PLN03218        691 MGACSNAKNWKKALELYEDIKSIKL------RPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS  764 (1060)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHcCC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            9999999999999999999998884      4999999999999999999999999999999999989999999999999


Q ss_pred             HHcCC--ChHHHHHHHHhCCCccCHhHHHHHHHHhc
Q 018582          319 AAAGR--TSPVMLRRLKMEKVEVSEASKKLLEAICV  352 (353)
Q Consensus       319 ~~~g~--~~~~~~~~m~~~~~~p~~~~~~~l~~~c~  352 (353)
                      ++.|+  .+..++..|.+.|+.||..++..++.+|.
T Consensus       765 ~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~  800 (1060)
T PLN03218        765 ERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL  800 (1060)
T ss_pred             HHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            99999  66678899999999999999998888763

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=6e-60  Score=433.13  Aligned_cols=327  Identities=17%  Similarity=0.224  Sum_probs=318.3

Q ss_pred             CCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHH
Q 018582           19 FSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNL   98 (353)
Q Consensus        19 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l   98 (353)
                      ||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.| ..||..+|+.+
T Consensus       435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G-v~PdvvTynaL  513 (1060)
T PLN03218        435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG-VEANVHTFGAL  513 (1060)
T ss_pred             CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-CCCCHHHHHHH
Confidence            78899999999999999999999999999999999999999999999999999999999999999999 99999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH--hCCCCChhHHHHHHHHHHhcC
Q 018582           99 ASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRL--AFPNTANISYLNMIQVLVNLK  176 (353)
Q Consensus        99 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~  176 (353)
                      |.+|++.|++++|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|..  .++.||..+|++++.+|++.|
T Consensus       514 I~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G  593 (1060)
T PLN03218        514 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG  593 (1060)
T ss_pred             HHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence            999999999999999999999999999999999999999999999999999999986  578999999999999999999


Q ss_pred             ChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHH
Q 018582          177 DLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLE  256 (353)
Q Consensus       177 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~  256 (353)
                      ++++|.++|+.|.+.++.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++
T Consensus       594 ~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~  673 (1060)
T PLN03218        594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ  673 (1060)
T ss_pred             CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCC--ChHHHHHHHHh
Q 018582          257 KAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR--TSPVMLRRLKM  334 (353)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~~  334 (353)
                      +|.+.|+      .|+..+|+.++.+|++.|++++|.++|++|.+.+..||..+|+.|+.+|++.|+  .+..+++.|..
T Consensus       674 eM~k~G~------~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~  747 (1060)
T PLN03218        674 DARKQGI------KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR  747 (1060)
T ss_pred             HHHHcCC------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            9999994      499999999999999999999999999999999999999999999999999999  56677999999


Q ss_pred             CCCccCHhHHHHHHHHhc
Q 018582          335 EKVEVSEASKKLLEAICV  352 (353)
Q Consensus       335 ~~~~p~~~~~~~l~~~c~  352 (353)
                      .|+.||..||..++..|.
T Consensus       748 ~Gi~Pd~~Ty~sLL~a~~  765 (1060)
T PLN03218        748 LGLCPNTITYSILLVASE  765 (1060)
T ss_pred             cCCCCCHHHHHHHHHHHH
Confidence            999999999999999885

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=1e-53  Score=388.73  Aligned_cols=331  Identities=17%  Similarity=0.224  Sum_probs=280.9

Q ss_pred             hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 018582            2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEE   81 (353)
Q Consensus         2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~   81 (353)
                      +++|.++|++|.+    ||..+||.+|.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|++.|+.+.+.+++..
T Consensus       174 ~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~  249 (697)
T PLN03081        174 LIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCC  249 (697)
T ss_pred             HHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHH
Confidence            3455555555543    455555666666666666666666666665555555656666666666655666556665555


Q ss_pred             HHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCC
Q 018582           82 MKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTA  161 (353)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  161 (353)
                      +.+.| ..||..+|+.|+.+|++.|++++|.++|++|.    .+|..+|+.++.+|++.|++++|+++|++|.+.|+.||
T Consensus       250 ~~~~g-~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd  324 (697)
T PLN03081        250 VLKTG-VVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID  324 (697)
T ss_pred             HHHhC-CCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence            56666 67777788999999999999999999999995    36899999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 018582          162 NISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDY  241 (353)
Q Consensus       162 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~  241 (353)
                      ..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.|+++|++.|++++|.++|++|.+    ||..+|+.||.+
T Consensus       325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~  400 (697)
T PLN03081        325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAG  400 (697)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999964    689999999999


Q ss_pred             HHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHh-cCCCCChhhhHHHHHHHHH
Q 018582          242 YLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKK-AVDDLGVEVFEPLIRTYAA  320 (353)
Q Consensus       242 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~  320 (353)
                      |++.|+.++|+++|++|.+.|+      .||..||+.++.+|.+.|++++|.++|+.|.+ .+..|+..+|+.++.+|++
T Consensus       401 y~~~G~~~~A~~lf~~M~~~g~------~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r  474 (697)
T PLN03081        401 YGNHGRGTKAVEMFERMIAEGV------APNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR  474 (697)
T ss_pred             HHHcCCHHHHHHHHHHHHHhCC------CCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh
Confidence            9999999999999999999995      49999999999999999999999999999986 6888999999999999999


Q ss_pred             cCCChHHHHHHHHhCCCccCHhHHHHHHHHhc
Q 018582          321 AGRTSPVMLRRLKMEKVEVSEASKKLLEAICV  352 (353)
Q Consensus       321 ~g~~~~~~~~~m~~~~~~p~~~~~~~l~~~c~  352 (353)
                      .|+..++. +.+.+.++.|+..++..|+.+|.
T Consensus       475 ~G~~~eA~-~~~~~~~~~p~~~~~~~Ll~a~~  505 (697)
T PLN03081        475 EGLLDEAY-AMIRRAPFKPTVNMWAALLTACR  505 (697)
T ss_pred             cCCHHHHH-HHHHHCCCCCCHHHHHHHHHHHH
Confidence            99955553 33456689999999999999985

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=1.3e-52  Score=381.55  Aligned_cols=333  Identities=16%  Similarity=0.193  Sum_probs=292.3

Q ss_pred             ChHHHHHHHHHHHhcC-CCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHH
Q 018582            1 MTEKAEALLEKMKELN-LGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVI   79 (353)
Q Consensus         1 ~~~~A~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~   79 (353)
                      ++++|+++|+.|...+ ..||..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.++.+|++.|+++.|.++|
T Consensus       102 ~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf  181 (697)
T PLN03081        102 RHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLF  181 (697)
T ss_pred             CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHH
Confidence            3678999999998764 678999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC
Q 018582           80 EEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN  159 (353)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  159 (353)
                      ++|.     .||..+|+.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|.+.|..+.+.+++..+.+.|..
T Consensus       182 ~~m~-----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~  256 (697)
T PLN03081        182 DEMP-----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVV  256 (697)
T ss_pred             hcCC-----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCC
Confidence            9885     37888999999999999999999999999999999999999999999999888888888888888888888


Q ss_pred             CChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHH
Q 018582          160 TANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFS  239 (353)
Q Consensus       160 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li  239 (353)
                      ||..+|+.++.+|++.|++++|.++|++|.    .+|..+||.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++
T Consensus       257 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll  332 (697)
T PLN03081        257 GDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMI  332 (697)
T ss_pred             ccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            888888999999999999999998888885    4578889999999999999999999999988888888888999999


Q ss_pred             HHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHH
Q 018582          240 DYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYA  319 (353)
Q Consensus       240 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  319 (353)
                      .+|++.|++++|.+++..|.+.|.      .||..+++.|+.+|+++|++++|.++|++|.+    ||..+||.||.+|+
T Consensus       333 ~a~~~~g~~~~a~~i~~~m~~~g~------~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~  402 (697)
T PLN03081        333 RIFSRLALLEHAKQAHAGLIRTGF------PLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYG  402 (697)
T ss_pred             HHHHhccchHHHHHHHHHHHHhCC------CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHH
Confidence            999999999999999998888884      48888888888888888888888888888754    77888888888888


Q ss_pred             HcCC--ChHHHHHHHHhCCCccCHhHHHHHHHHhc
Q 018582          320 AAGR--TSPVMLRRLKMEKVEVSEASKKLLEAICV  352 (353)
Q Consensus       320 ~~g~--~~~~~~~~m~~~~~~p~~~~~~~l~~~c~  352 (353)
                      ++|+  .+..+|++|...|+.||..||..++.+|+
T Consensus       403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~  437 (697)
T PLN03081        403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACR  437 (697)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence            8888  55567888888888888888888888875

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=1.9e-52  Score=388.85  Aligned_cols=333  Identities=16%  Similarity=0.176  Sum_probs=269.0

Q ss_pred             ChHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 018582            1 MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIE   80 (353)
Q Consensus         1 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~   80 (353)
                      ++++|.++|+.|..    ||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++.
T Consensus       237 ~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~  312 (857)
T PLN03077        237 DVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHG  312 (857)
T ss_pred             CHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Confidence            36789999999975    78899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCC
Q 018582           81 EMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNT  160 (353)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  160 (353)
                      .+.+.| ..||..+|+.|+.+|++.|++++|.++|++|.    .||..+|+.+|.+|++.|++++|+++|++|.+.|+.|
T Consensus       313 ~~~~~g-~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~P  387 (857)
T PLN03077        313 YVVKTG-FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSP  387 (857)
T ss_pred             HHHHhC-CccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC
Confidence            999999 99999999999999999999999999999986    4788899999999999999999999999999999999


Q ss_pred             ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 018582          161 ANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSD  240 (353)
Q Consensus       161 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~  240 (353)
                      |..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+.||++|++.|++++|.++|++|.+    +|..+|+.+|.
T Consensus       388 d~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~  463 (857)
T PLN03077        388 DEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIA  463 (857)
T ss_pred             CceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999998864    46677788888


Q ss_pred             HHHccCChHHHHHHHHHHHHcCCCCCCC-----------------------------CcccHHHHHHHHHHHHhcCChhh
Q 018582          241 YYLRNGDMKLAVDCLEKAIDTGRGDGGK-----------------------------WVPSSETIRTFMRHFEQEKDVDG  291 (353)
Q Consensus       241 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~l~~~~~~~~~~~~  291 (353)
                      +|++.|+.++|+++|++|.. +++|+..                             +.++..++++|+.+|+++|++++
T Consensus       464 ~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~  542 (857)
T PLN03077        464 GLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNY  542 (857)
T ss_pred             HHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHH
Confidence            88777777777777777764 3332210                             11222222333344444444444


Q ss_pred             HHHHHHHHHhcCCCCChhhhHHHHHHHHHcCC--ChHHHHHHHHhCCCccCHhHHHHHHHHhc
Q 018582          292 AEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR--TSPVMLRRLKMEKVEVSEASKKLLEAICV  352 (353)
Q Consensus       292 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~~~~~~p~~~~~~~l~~~c~  352 (353)
                      |.++|+.+     .+|..+|++++.+|+++|+  .+..+|++|...|+.||..||..++.+|+
T Consensus       543 A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~  600 (857)
T PLN03077        543 AWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACS  600 (857)
T ss_pred             HHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHh
Confidence            44444443     2555566666666666666  34445566666666666666666665554

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=4.4e-51  Score=379.75  Aligned_cols=334  Identities=18%  Similarity=0.232  Sum_probs=223.6

Q ss_pred             hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 018582            2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEE   81 (353)
Q Consensus         2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~   81 (353)
                      ++.|+++|+.|.+    ||..+||.+|.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..+.+++..
T Consensus       137 ~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~  212 (857)
T PLN03077        137 LVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAH  212 (857)
T ss_pred             hHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHH
Confidence            4667777777764    677777777777777777777777777777777777777777777777776777777777777


Q ss_pred             HHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCC
Q 018582           82 MKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTA  161 (353)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  161 (353)
                      +.+.| ..||..+++.|+.+|++.|+++.|.++|++|.    .||..+||.+|.+|++.|++++|+++|++|...|+.||
T Consensus       213 ~~~~g-~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd  287 (857)
T PLN03077        213 VVRFG-FELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPD  287 (857)
T ss_pred             HHHcC-CCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence            66666 66666666666666666666666666666664    24566666666666666666666666666666666666


Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 018582          162 NISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDY  241 (353)
Q Consensus       162 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~  241 (353)
                      ..||+.++.+|++.|+.+.|.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|.    .||..+|+.+|.+
T Consensus       288 ~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~  363 (857)
T PLN03077        288 LMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISG  363 (857)
T ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHH
Confidence            666666666666666666666666666666666666666666666665555555555555553    2345555555555


Q ss_pred             HHccCChHHHHHHHHHHHHcCCCCCCC-----------------------------CcccHHHHHHHHHHHHhcCChhhH
Q 018582          242 YLRNGDMKLAVDCLEKAIDTGRGDGGK-----------------------------WVPSSETIRTFMRHFEQEKDVDGA  292 (353)
Q Consensus       242 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~l~~~~~~~~~~~~a  292 (353)
                      |++.|++++|+++|++|.+.|+.|+..                             ..|+..+++.|+.+|++.|++++|
T Consensus       364 ~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A  443 (857)
T PLN03077        364 YEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKA  443 (857)
T ss_pred             HHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHH
Confidence            555555555555555555555332211                             346667777777777777777777


Q ss_pred             HHHHHHHHhcCCCCChhhhHHHHHHHHHcCC--ChHHHHHHHHhCCCccCHhHHHHHHHHhcC
Q 018582          293 EGFLEILKKAVDDLGVEVFEPLIRTYAAAGR--TSPVMLRRLKMEKVEVSEASKKLLEAICVE  353 (353)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~~~~~~p~~~~~~~l~~~c~~  353 (353)
                      .++|++|.+    +|..+|+.++.+|++.|+  .+..+|+.|.. ++.||..|+..++.+|++
T Consensus       444 ~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~  501 (857)
T PLN03077        444 LEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACAR  501 (857)
T ss_pred             HHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhh
Confidence            777777643    566777777888877777  34456778865 699999999999998863

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.95  E-value=1.9e-24  Score=185.32  Aligned_cols=309  Identities=17%  Similarity=0.172  Sum_probs=253.5

Q ss_pred             CchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc---HHHHH
Q 018582           20 SSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAAD---WTTFS   96 (353)
Q Consensus        20 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~   96 (353)
                      ...........+...|++++|...|.++.+.+ +.+..++..+...+...|++++|..+++.+...+ ..++   ..++.
T Consensus        34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~~~~  111 (389)
T PRK11788         34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP-DLTREQRLLALQ  111 (389)
T ss_pred             hccHHHHHHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC-CCCHHHHHHHHH
Confidence            33334444556678899999999999999864 3455688889999999999999999999998864 2222   35678


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCh----hHHHHHHHHH
Q 018582           97 NLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTAN----ISYLNMIQVL  172 (353)
Q Consensus        97 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~  172 (353)
                      .++..|.+.|++++|..+|+++.+..+ .+..++..++..+.+.|++++|.+.++.+...++.+..    ..+..+...+
T Consensus       112 ~La~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~  190 (389)
T PRK11788        112 ELGQDYLKAGLLDRAEELFLQLVDEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQA  190 (389)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence            899999999999999999999987543 46788999999999999999999999999887654332    2455677788


Q ss_pred             HhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHH
Q 018582          173 VNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAV  252 (353)
Q Consensus       173 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~  252 (353)
                      .+.|++++|...++++.+..+. +...+..+...|.+.|++++|.++++++.+.+......+++.++.+|...|++++|.
T Consensus       191 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~  269 (389)
T PRK11788        191 LARGDLDAARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGL  269 (389)
T ss_pred             HhCCCHHHHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHH
Confidence            8999999999999999876533 567888899999999999999999999997643333467888999999999999999


Q ss_pred             HHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHH---cCC--ChHH
Q 018582          253 DCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAA---AGR--TSPV  327 (353)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~--~~~~  327 (353)
                      +.++++.+..        |+...+..++..+.+.|++++|..+++++.+..  |+...++.++..+..   .|+  .+..
T Consensus       270 ~~l~~~~~~~--------p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~--P~~~~~~~l~~~~~~~~~~g~~~~a~~  339 (389)
T PRK11788        270 EFLRRALEEY--------PGADLLLALAQLLEEQEGPEAAQALLREQLRRH--PSLRGFHRLLDYHLAEAEEGRAKESLL  339 (389)
T ss_pred             HHHHHHHHhC--------CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--cCHHHHHHHHHHhhhccCCccchhHHH
Confidence            9999999876        777777889999999999999999999988874  677788888887775   335  4446


Q ss_pred             HHHHHHhCCCccCHh
Q 018582          328 MLRRLKMEKVEVSEA  342 (353)
Q Consensus       328 ~~~~m~~~~~~p~~~  342 (353)
                      +++.|.+.++.|++.
T Consensus       340 ~~~~~~~~~~~~~p~  354 (389)
T PRK11788        340 LLRDLVGEQLKRKPR  354 (389)
T ss_pred             HHHHHHHHHHhCCCC
Confidence            689999988888876

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.95  E-value=1.6e-24  Score=185.77  Aligned_cols=294  Identities=15%  Similarity=0.097  Sum_probs=248.8

Q ss_pred             hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCC---cchHHHHHHHHHhcCChhHHHHH
Q 018582            2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPD---SYTYNVWMRALAAVNDISGAERV   78 (353)
Q Consensus         2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~   78 (353)
                      +++|.+.|+.+.+.+. .+..++..+...+...|++++|...++.+...+..++   ...+..+...+...|+++.|..+
T Consensus        51 ~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~  129 (389)
T PRK11788         51 PDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEEL  129 (389)
T ss_pred             hHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            5789999999998763 4667899999999999999999999999987532221   24678888999999999999999


Q ss_pred             HHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHH
Q 018582           79 IEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDL----SAYQFLITLYGQTGNLSEVYRIWRSLR  154 (353)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~  154 (353)
                      |+++.+.  .+.+..++..++..+.+.|++++|.+.++.+.+.++.+..    ..+..+...+.+.|++++|...|+++.
T Consensus       130 ~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al  207 (389)
T PRK11788        130 FLQLVDE--GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKAL  207 (389)
T ss_pred             HHHHHcC--CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            9999986  4667889999999999999999999999999886654332    245667788899999999999999998


Q ss_pred             HhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhh
Q 018582          155 LAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKT  234 (353)
Q Consensus       155 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~  234 (353)
                      +..+ .+...+..+...+.+.|++++|.++++++...++.....+++.++.+|...|++++|...++++.+.  .|+...
T Consensus       208 ~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~  284 (389)
T PRK11788        208 AADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADL  284 (389)
T ss_pred             hHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchH
Confidence            7654 3456788889999999999999999999997755444567889999999999999999999999886  466677


Q ss_pred             HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHh---cCChhhHHHHHHHHHhcCCCCChh
Q 018582          235 WEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQ---EKDVDGAEGFLEILKKAVDDLGVE  309 (353)
Q Consensus       235 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~  309 (353)
                      +..++..+.+.|++++|..+++++.+..        |+...+..++..+..   .|+.+++..+++++.+.++.|++.
T Consensus       285 ~~~la~~~~~~g~~~~A~~~l~~~l~~~--------P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~  354 (389)
T PRK11788        285 LLALAQLLEEQEGPEAAQALLREQLRRH--------PSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR  354 (389)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhC--------cCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence            7889999999999999999999999876        898889888887764   558999999999999866656655

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.94  E-value=2.7e-23  Score=197.15  Aligned_cols=316  Identities=19%  Similarity=0.159  Sum_probs=213.5

Q ss_pred             hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 018582            2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEE   81 (353)
Q Consensus         2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~   81 (353)
                      +++|..+|+.+...+. .+...+..++..+.+.|++++|.++++.+.+.. +.+..+|..+..++...|++++|...|+.
T Consensus       549 ~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  626 (899)
T TIGR02917       549 EEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKK  626 (899)
T ss_pred             HHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            5677777777766553 455667777777777777777777777776642 44566777777777777777777777777


Q ss_pred             HHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCC
Q 018582           82 MKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTA  161 (353)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  161 (353)
                      +.+.  .+.+...+..+..++.+.|++++|...++++.+..+. +..++..++..+...|++++|.++++.+.+..+ .+
T Consensus       627 ~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~  702 (899)
T TIGR02917       627 LLAL--QPDSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KA  702 (899)
T ss_pred             HHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CC
Confidence            7765  3455666777777777777777777777777665433 566777777777777777777777777766654 35


Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 018582          162 NISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDY  241 (353)
Q Consensus       162 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~  241 (353)
                      ...+..+...+...|++++|.+.++.+....+.  ..++..++.++.+.|++++|.+.++++.+.. +.+...+..+...
T Consensus       703 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~  779 (899)
T TIGR02917       703 ALGFELEGDLYLRQKDYPAAIQAYRKALKRAPS--SQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAEL  779 (899)
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC--chHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            556666777777777777777777777665433  3555666777777777777777777766653 3356666667777


Q ss_pred             HHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHc
Q 018582          242 YLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAA  321 (353)
Q Consensus       242 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  321 (353)
                      |...|++++|.+.|+++.+..       +++..++..+...+...|+ .+|...++++.+..+ .++.++..+...+.+.
T Consensus       780 ~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  850 (899)
T TIGR02917       780 YLAQKDYDKAIKHYRTVVKKA-------PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAP-NIPAILDTLGWLLVEK  850 (899)
T ss_pred             HHHCcCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHc
Confidence            777777777777777777664       1345666666666666666 567777776666655 5566666666666666


Q ss_pred             CCChHH--HHHHHHhC
Q 018582          322 GRTSPV--MLRRLKME  335 (353)
Q Consensus       322 g~~~~~--~~~~m~~~  335 (353)
                      |++.++  .++.+.+.
T Consensus       851 g~~~~A~~~~~~a~~~  866 (899)
T TIGR02917       851 GEADRALPLLRKAVNI  866 (899)
T ss_pred             CCHHHHHHHHHHHHhh
Confidence            664433  34444443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.94  E-value=6.3e-23  Score=194.65  Aligned_cols=306  Identities=16%  Similarity=0.122  Sum_probs=149.6

Q ss_pred             hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 018582            2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEE   81 (353)
Q Consensus         2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~   81 (353)
                      +++|.+.|+.+.+.+. .+...+..+...+...|++++|.+.|+++...+ +.+..++..+...+.+.|+.++|...+++
T Consensus       481 ~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  558 (899)
T TIGR02917       481 LAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEK  558 (899)
T ss_pred             HHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3455555555544332 233444445555555555555555555554432 22334444444455555555555555555


Q ss_pred             HHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC--
Q 018582           82 MKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN--  159 (353)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--  159 (353)
                      +.+.  .+.+...+..++..|.+.|++++|..+++.+....+ .+..+|..+...+...|++++|...|+.+.+..+.  
T Consensus       559 ~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  635 (899)
T TIGR02917       559 AAEL--NPQEIEPALALAQYYLGKGQLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSA  635 (899)
T ss_pred             HHHh--CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence            4443  233334444444444445555555554444443322 23444444444444444444444444444433221  


Q ss_pred             -------------------------------CChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 018582          160 -------------------------------TANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYA  208 (353)
Q Consensus       160 -------------------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  208 (353)
                                                     .+..++..++..+...|++++|.++++.+....+ .+...+..+...+.
T Consensus       636 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~  714 (899)
T TIGR02917       636 LALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYL  714 (899)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHH
Confidence                                           2334444444444455555555555554444432 24444444555555


Q ss_pred             hcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCC
Q 018582          209 KEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKD  288 (353)
Q Consensus       209 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  288 (353)
                      ..|++++|.+.|+.+...+  |+..++..+...+.+.|++++|.+.++++.+..       +.+...+..+...|...|+
T Consensus       715 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-------~~~~~~~~~la~~~~~~g~  785 (899)
T TIGR02917       715 RQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-------PNDAVLRTALAELYLAQKD  785 (899)
T ss_pred             HCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCcC
Confidence            5555555555555555432  233444445555555555555555555555543       1234555555555555666


Q ss_pred             hhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCC
Q 018582          289 VDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR  323 (353)
Q Consensus       289 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  323 (353)
                      +++|...|+++.+..| .++.+++.+...+.+.|+
T Consensus       786 ~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~  819 (899)
T TIGR02917       786 YDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLELKD  819 (899)
T ss_pred             HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCc
Confidence            6666666666655555 555556666666665555

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.92  E-value=1.4e-20  Score=169.51  Aligned_cols=311  Identities=14%  Similarity=0.063  Sum_probs=250.9

Q ss_pred             hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 018582            2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEE   81 (353)
Q Consensus         2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~   81 (353)
                      +++|+.+++....... -+...+..++......|++++|.+.|+++.... +.+...+..+...+...|++++|...+++
T Consensus        58 ~~~A~~l~~~~l~~~p-~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~  135 (656)
T PRK15174         58 TDVGLTLLSDRVLTAK-NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQ  135 (656)
T ss_pred             cchhHHHhHHHHHhCC-CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            5678888888887654 345566677777788999999999999998853 34556788888899999999999999999


Q ss_pred             HHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCC
Q 018582           82 MKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTA  161 (353)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  161 (353)
                      +.+.  .+.+...+..+...+...|++++|...++.+....+.+ ...+..+ ..+...|++++|...++.+....+.++
T Consensus       136 Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~  211 (656)
T PRK15174        136 AWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDHDLARALLPFFALER  211 (656)
T ss_pred             HHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcc
Confidence            9986  46667788889999999999999999999887765543 3344333 347889999999999999877655445


Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHH----HHHHHHHHHhcCCCCChhhHHH
Q 018582          162 NISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLEN----AEELKERARRRGADPNAKTWEI  237 (353)
Q Consensus       162 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~~~~~~~~p~~~~~~~  237 (353)
                      ...+..+..++...|++++|...+++.....+. +...+..+...+...|++++    |...|++..+..+ .+...+..
T Consensus       212 ~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~  289 (656)
T PRK15174        212 QESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-DNVRIVTL  289 (656)
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHHHH
Confidence            555566678888999999999999999987644 67888889999999999986    7999999887643 35678889


Q ss_pred             HHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc-HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHH
Q 018582          238 FSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIR  316 (353)
Q Consensus       238 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  316 (353)
                      +...+...|++++|+..+++..+..        |+ ...+..+..++.+.|++++|...++++.+.++ .+...+..+..
T Consensus       290 lg~~l~~~g~~~eA~~~l~~al~l~--------P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P-~~~~~~~~~a~  360 (656)
T PRK15174        290 YADALIRTGQNEKAIPLLQQSLATH--------PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKG-VTSKWNRYAAA  360 (656)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-cchHHHHHHHH
Confidence            9999999999999999999999876        44 56777888899999999999999999998876 45555566678


Q ss_pred             HHHHcCCChHHHH
Q 018582          317 TYAAAGRTSPVML  329 (353)
Q Consensus       317 ~~~~~g~~~~~~~  329 (353)
                      ++...|+..+++-
T Consensus       361 al~~~G~~deA~~  373 (656)
T PRK15174        361 ALLQAGKTSEAES  373 (656)
T ss_pred             HHHHCCCHHHHHH
Confidence            8899999665553

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.90  E-value=2.3e-19  Score=161.65  Aligned_cols=302  Identities=10%  Similarity=0.044  Sum_probs=246.0

Q ss_pred             ChHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 018582            1 MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIE   80 (353)
Q Consensus         1 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~   80 (353)
                      .+++|++.|+.+....+ .+...+..+...+.+.|++++|.+.|++..... +.+...+..+...+...|++++|...++
T Consensus        91 ~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~  168 (656)
T PRK15174         91 QPDAVLQVVNKLLAVNV-CQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLAR  168 (656)
T ss_pred             CHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHH
Confidence            36889999999998764 567788999999999999999999999998852 3456678889999999999999999999


Q ss_pred             HHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCC
Q 018582           81 EMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNT  160 (353)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  160 (353)
                      .+....  +.+...+..+ ..+.+.|++++|...++.+....+.++...+..+...+...|++++|+..+++.....+ .
T Consensus       169 ~~~~~~--P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~  244 (656)
T PRK15174        169 TQAQEV--PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-D  244 (656)
T ss_pred             HHHHhC--CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-C
Confidence            887753  3444444444 34788999999999999988765544555566667889999999999999999988765 3


Q ss_pred             ChhHHHHHHHHHHhcCChhH----HHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHH
Q 018582          161 ANISYLNMIQVLVNLKDLPG----AEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWE  236 (353)
Q Consensus       161 ~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~  236 (353)
                      +...+..+...+...|++++    |...+++.....+. +...+..+...+...|++++|...+++..+..+. +...+.
T Consensus       245 ~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~  322 (656)
T PRK15174        245 GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRA  322 (656)
T ss_pred             CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence            56778889999999999986    89999999987654 7889999999999999999999999999986432 456777


Q ss_pred             HHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHH-HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHH
Q 018582          237 IFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSE-TIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLI  315 (353)
Q Consensus       237 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  315 (353)
                      .+...+.+.|++++|++.++.+...+        |+.. .+..+..++...|+.++|...|++..+..+......|...+
T Consensus       323 ~La~~l~~~G~~~eA~~~l~~al~~~--------P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~  394 (656)
T PRK15174        323 MYARALRQVGQYTAASDEFVQLAREK--------GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGL  394 (656)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC--------ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHH
Confidence            88899999999999999999999876        6543 34445678899999999999999999877644444444444


Q ss_pred             HHH
Q 018582          316 RTY  318 (353)
Q Consensus       316 ~~~  318 (353)
                      ..|
T Consensus       395 ~~~  397 (656)
T PRK15174        395 LAL  397 (656)
T ss_pred             HHH
Confidence            333

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.89  E-value=1.6e-18  Score=156.44  Aligned_cols=319  Identities=12%  Similarity=0.036  Sum_probs=236.4

Q ss_pred             hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHH--
Q 018582            2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVI--   79 (353)
Q Consensus         2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~--   79 (353)
                      +++|++.|+......  |+...|..+..+|.+.|++++|++.++...+.. +.+...|..+..++...|++++|...|  
T Consensus       143 ~~~Ai~~y~~al~~~--p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~~~~~~  219 (615)
T TIGR00990       143 FNKAIKLYSKAIECK--PDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADALLDLTA  219 (615)
T ss_pred             HHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            578888888877654  677778888888888888888888888887743 223446666666777777766665433  


Q ss_pred             --------------------------------------------------------------------------------
Q 018582           80 --------------------------------------------------------------------------------   79 (353)
Q Consensus        80 --------------------------------------------------------------------------------   79 (353)
                                                                                                      
T Consensus       220 ~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  299 (615)
T TIGR00990       220 SCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGL  299 (615)
T ss_pred             HHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHH
Confidence                                                                                            


Q ss_pred             ------------------HHHHHcCCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcc
Q 018582           80 ------------------EEMKRDGRVAA-DWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQT  140 (353)
Q Consensus        80 ------------------~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  140 (353)
                                        +.....+...| ....++.+...+...|++++|+..+++.....+. ...+|..+...+...
T Consensus       300 ~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~  378 (615)
T TIGR00990       300 KSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLEL  378 (615)
T ss_pred             HHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHC
Confidence                              22222110112 2334566666777788888888888888775433 466788888888899


Q ss_pred             CCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHH
Q 018582          141 GNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELK  220 (353)
Q Consensus       141 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  220 (353)
                      |++++|...|++..+..+ .+..+|..+...+...|++++|...|++..+..+. +...+..+...+.+.|++++|...|
T Consensus       379 g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~  456 (615)
T TIGR00990       379 GDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATF  456 (615)
T ss_pred             CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            999999999998877654 35678888888999999999999999999887644 6777888889999999999999999


Q ss_pred             HHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccH-HHHHHHHHHHHhcCChhhHHHHHHHH
Q 018582          221 ERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSS-ETIRTFMRHFEQEKDVDGAEGFLEIL  299 (353)
Q Consensus       221 ~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~  299 (353)
                      ++..+.. +.+...++.+...+...|++++|++.|++.......... ...+. ..++.....+...|++++|.+.+++.
T Consensus       457 ~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~-~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kA  534 (615)
T TIGR00990       457 RRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKP-MYMNVLPLINKALALFQWKQDFIEAENLCEKA  534 (615)
T ss_pred             HHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccc-ccccHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            9988753 335678888999999999999999999999887521000 00111 12222233344579999999999999


Q ss_pred             HhcCCCCChhhhHHHHHHHHHcCCChHHHH
Q 018582          300 KKAVDDLGVEVFEPLIRTYAAAGRTSPVML  329 (353)
Q Consensus       300 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~  329 (353)
                      ...++ .+...+..+...+.+.|+..+++-
T Consensus       535 l~l~p-~~~~a~~~la~~~~~~g~~~eAi~  563 (615)
T TIGR00990       535 LIIDP-ECDIAVATMAQLLLQQGDVDEALK  563 (615)
T ss_pred             HhcCC-CcHHHHHHHHHHHHHccCHHHHHH
Confidence            99887 777889999999999999766553

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.88  E-value=1.5e-19  Score=150.93  Aligned_cols=324  Identities=19%  Similarity=0.214  Sum_probs=257.7

Q ss_pred             hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcc------------------------
Q 018582            2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSY------------------------   57 (353)
Q Consensus         2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~------------------------   57 (353)
                      +++|+.+++.+.+... ..+..|..+..++...|+.+.|.+.|.+..+.  .|+..                        
T Consensus       132 ~~~al~~y~~aiel~p-~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYl  208 (966)
T KOG4626|consen  132 LQDALALYRAAIELKP-KFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYL  208 (966)
T ss_pred             HHHHHHHHHHHHhcCc-hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHH
Confidence            5788999999988663 46778999999999999999998888887763  34332                        


Q ss_pred             -----------hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCC
Q 018582           58 -----------TYNVWMRALAAVNDISGAERVIEEMKRDGRVAAD-WTTFSNLASIYVEAGLFEKAERALKELENRNAHR  125 (353)
Q Consensus        58 -----------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  125 (353)
                                 .|..+...+-..|++-.|++.|++..+.   .|+ ...|-.|...|...+.++.|...+.+.....+. 
T Consensus       209 kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl---dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn-  284 (966)
T KOG4626|consen  209 KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL---DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN-  284 (966)
T ss_pred             HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC---CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc-
Confidence                       2333333344456666666666666663   333 456667777777777788887777777654333 


Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 018582          126 DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIG  205 (353)
Q Consensus       126 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~  205 (353)
                      ...++..+...|...|..+-|+..|++..+..+. -...|+.+..++-..|+..+|...|.+.....+. .....+.|..
T Consensus       285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgn  362 (966)
T KOG4626|consen  285 HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGN  362 (966)
T ss_pred             chhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHH
Confidence            4566777777788888888888888888776542 4568999999999999999999999999887644 6678888999


Q ss_pred             HHHhcCChHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc-HHHHHHHHHHH
Q 018582          206 AYAKEGRLENAEELKERARRRGADPN-AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHF  283 (353)
Q Consensus       206 ~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~  283 (353)
                      .|...|.+++|..+|....+-  .|+ ...++.|...|-+.|++++|+..+++.++..        |+ ...|+.+...|
T Consensus       363 i~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~--------P~fAda~~NmGnt~  432 (966)
T KOG4626|consen  363 IYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK--------PTFADALSNMGNTY  432 (966)
T ss_pred             HHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC--------chHHHHHHhcchHH
Confidence            999999999999999998874  444 4678999999999999999999999999865        77 67899999999


Q ss_pred             HhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChHHHHHHHHhCCCccCHhHHH
Q 018582          284 EQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKK  345 (353)
Q Consensus       284 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~~~  345 (353)
                      -..|+.+.|.+.+.+.+..+| .-...++.|...|-..|...+++-..-....++||..-..
T Consensus       433 ke~g~v~~A~q~y~rAI~~nP-t~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~  493 (966)
T KOG4626|consen  433 KEMGDVSAAIQCYTRAIQINP-TFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAY  493 (966)
T ss_pred             HHhhhHHHHHHHHHHHHhcCc-HHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhh
Confidence            999999999999999999888 7788999999999999999999987777888888876533

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.86  E-value=2.6e-17  Score=158.12  Aligned_cols=307  Identities=15%  Similarity=0.118  Sum_probs=185.8

Q ss_pred             hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcc---hHH------------HHHHHH
Q 018582            2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSY---TYN------------VWMRAL   66 (353)
Q Consensus         2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~------------~ll~~~   66 (353)
                      +++|+..|+...+... .+..++..+...+.+.|++++|+..|++..+..  |+..   .|.            .....+
T Consensus       285 ~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~--p~~~~~~~~~~ll~~~~~~~~~~~g~~~  361 (1157)
T PRK11447        285 GGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALD--PHSSNRDKWESLLKVNRYWLLIQQGDAA  361 (1157)
T ss_pred             HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCccchhHHHHHHHhhhHHHHHHHHHHH
Confidence            5788889988887653 467788888899999999999999999888753  3321   121            123456


Q ss_pred             HhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHH-----------
Q 018582           67 AAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLIT-----------  135 (353)
Q Consensus        67 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-----------  135 (353)
                      .+.|++++|...|+++.+.  .+.+...+..+...+...|++++|++.|++..+..+. +..++..+..           
T Consensus       362 ~~~g~~~eA~~~~~~Al~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~  438 (1157)
T PRK11447        362 LKANNLAQAERLYQQARQV--DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKAL  438 (1157)
T ss_pred             HHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHH
Confidence            7889999999999999886  4566777778889999999999999999988775443 3333433333           


Q ss_pred             -------------------------------HHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHH
Q 018582          136 -------------------------------LYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKC  184 (353)
Q Consensus       136 -------------------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  184 (353)
                                                     .+...|++++|++.|++..+..+. +...+..+...|.+.|++++|...
T Consensus       439 ~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~  517 (1157)
T PRK11447        439 AFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADAL  517 (1157)
T ss_pred             HHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence                                           333456666666666666655432 344555566666666777777666


Q ss_pred             HHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-------------------------------------
Q 018582          185 FKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRG-------------------------------------  227 (353)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-------------------------------------  227 (353)
                      ++++.+..+. +...+..+...+...++.++|...++.+....                                     
T Consensus       518 l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l  596 (1157)
T PRK11447        518 MRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL  596 (1157)
T ss_pred             HHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence            6666554322 33333333333333444444444433321110                                     


Q ss_pred             --CCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCC
Q 018582          228 --ADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDD  305 (353)
Q Consensus       228 --~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  305 (353)
                        .+++...+..+...+.+.|++++|++.|++.++..       +.+...+..+...+...|++++|.+.++.+.+..+ 
T Consensus       597 ~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-------P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p-  668 (1157)
T PRK11447        597 RQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-------PGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN-  668 (1157)
T ss_pred             HhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC-
Confidence              12233344444555555566666666666655543       02345555555566666666666666665555444 


Q ss_pred             CChhhhHHHHHHHHHcCCC
Q 018582          306 LGVEVFEPLIRTYAAAGRT  324 (353)
Q Consensus       306 ~~~~~~~~l~~~~~~~g~~  324 (353)
                      .+...+..+..++.+.|+.
T Consensus       669 ~~~~~~~~la~~~~~~g~~  687 (1157)
T PRK11447        669 DSLNTQRRVALAWAALGDT  687 (1157)
T ss_pred             CChHHHHHHHHHHHhCCCH
Confidence            4445555555555555553

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.86  E-value=1.9e-17  Score=149.55  Aligned_cols=302  Identities=11%  Similarity=-0.023  Sum_probs=239.3

Q ss_pred             hHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHH
Q 018582           23 PFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIY  102 (353)
Q Consensus        23 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  102 (353)
                      .+......+.+.|++++|+..|++...  +.|+...|..+..++.+.|++++|+..++...+.  .+.+...+..+..+|
T Consensus       129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~  204 (615)
T TIGR00990       129 KLKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAY  204 (615)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHH
Confidence            355667788999999999999999987  4688888999999999999999999999999986  456778899999999


Q ss_pred             HhcCCHHHHHHHHHHHHHccCC----------------------------C-CHHHHHHHHH------------------
Q 018582          103 VEAGLFEKAERALKELENRNAH----------------------------R-DLSAYQFLIT------------------  135 (353)
Q Consensus       103 ~~~~~~~~a~~~~~~~~~~~~~----------------------------~-~~~~~~~l~~------------------  135 (353)
                      ...|++++|+.-|.........                            | +...+..+..                  
T Consensus       205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (615)
T TIGR00990       205 DGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSN  284 (615)
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccc
Confidence            9999999998766543221110                            0 0000000000                  


Q ss_pred             ------------H------HHccCCHHHHHHHHHHHHHhC-CCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 018582          136 ------------L------YGQTGNLSEVYRIWRSLRLAF-PNT-ANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATY  195 (353)
Q Consensus       136 ------------~------~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  195 (353)
                                  .      ....+++++|.+.|+...+.+ ..| ....+..+...+...|++++|...+++.....+. 
T Consensus       285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-  363 (615)
T TIGR00990       285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-  363 (615)
T ss_pred             ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-
Confidence                        0      012357889999999988764 223 3456788888899999999999999999887543 


Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcc-cHH
Q 018582          196 DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSE  274 (353)
Q Consensus       196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~  274 (353)
                      +...|..+...+...|++++|...|++..+.. +.+...|..+...+...|++++|+..|++.++..        | +..
T Consensus       364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~--------P~~~~  434 (615)
T TIGR00990       364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD--------PDFIF  434 (615)
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------ccCHH
Confidence            57788889999999999999999999998764 3357889999999999999999999999999986        5 467


Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChHHHHHHHHhCCCcc
Q 018582          275 TIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEV  339 (353)
Q Consensus       275 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p  339 (353)
                      .+..+...+.+.|++++|...+++..+..| .++..|+.+...+...|++.+++-..-+...+.|
T Consensus       435 ~~~~la~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p  498 (615)
T TIGR00990       435 SHIQLGVTQYKEGSIASSMATFRRCKKNFP-EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEK  498 (615)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence            788888999999999999999999998887 7889999999999999997666643333334444

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.84  E-value=2.5e-16  Score=145.03  Aligned_cols=339  Identities=10%  Similarity=0.024  Sum_probs=245.3

Q ss_pred             hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 018582            2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEE   81 (353)
Q Consensus         2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~   81 (353)
                      .++|++++....... +.+...+..+...+...|++++|.++|++..+.. +.+...+..+..++...|++++|...+++
T Consensus        31 ~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~  108 (765)
T PRK10049         31 DAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQ  108 (765)
T ss_pred             HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            578888888887633 2455568999999999999999999999988752 34456677788888999999999999999


Q ss_pred             HHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHH----------
Q 018582           82 MKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWR----------  151 (353)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----------  151 (353)
                      +.+.  .+.+.. +..+..++...|+.++|+..++++.+..+. +...+..+...+...+..++|++.++          
T Consensus       109 ~l~~--~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~  184 (765)
T PRK10049        109 LVSG--APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKR  184 (765)
T ss_pred             HHHh--CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHH
Confidence            9886  456666 888899999999999999999999887655 55566666666666666665544333          


Q ss_pred             ------------------------------------HHHHh-CCCCChh-HHH----HHHHHHHhcCChhHHHHHHHHHH
Q 018582          152 ------------------------------------SLRLA-FPNTANI-SYL----NMIQVLVNLKDLPGAEKCFKEWE  189 (353)
Q Consensus       152 ------------------------------------~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~  189 (353)
                                                          .+.+. ...|+.. .+.    ..+.++...|++++|...|+.+.
T Consensus       185 ~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll  264 (765)
T PRK10049        185 DLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLK  264 (765)
T ss_pred             HHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence                                                33322 1112211 111    11334567799999999999998


Q ss_pred             hcCCC-CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---ChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCC
Q 018582          190 SGCAT-YDIRVTNVMIGAYAKEGRLENAEELKERARRRGADP---NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGD  265 (353)
Q Consensus       190 ~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~  265 (353)
                      +.+.. |+. ....+..+|...|++++|...|+++.+.....   .......+..++...|++++|.++++.+.....+.
T Consensus       265 ~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~  343 (765)
T PRK10049        265 AEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPF  343 (765)
T ss_pred             ccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCce
Confidence            87632 332 22235778999999999999999988653221   12456667778899999999999999998864100


Q ss_pred             -----CCCCccc---HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChHHHHHHHHhCCC
Q 018582          266 -----GGKWVPS---SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKV  337 (353)
Q Consensus       266 -----~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~  337 (353)
                           .....|+   ...+..+...+...|+.++|.+.++++....| .+...+..++..+...|+...++-..-+...+
T Consensus       344 ~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P-~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l  422 (765)
T PRK10049        344 LRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAP-GNQGLRIDYASVLQARGWPRAAENELKKAEVL  422 (765)
T ss_pred             EeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence                 0001233   23456677788999999999999999999988 88999999999999999966655444455566


Q ss_pred             ccCHhHHHHHH
Q 018582          338 EVSEASKKLLE  348 (353)
Q Consensus       338 ~p~~~~~~~l~  348 (353)
                      .|+...+....
T Consensus       423 ~Pd~~~l~~~~  433 (765)
T PRK10049        423 EPRNINLEVEQ  433 (765)
T ss_pred             CCCChHHHHHH
Confidence            78875544433

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.84  E-value=8e-17  Score=154.78  Aligned_cols=319  Identities=14%  Similarity=0.057  Sum_probs=216.9

Q ss_pred             hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHH----------------
Q 018582            2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRA----------------   65 (353)
Q Consensus         2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~----------------   65 (353)
                      +++|++.|++..+... .+...+..+...+...|++++|.+.|++..+.. +.+...+..+...                
T Consensus       367 ~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~~~l~~l  444 (1157)
T PRK11447        367 LAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKALAFIASL  444 (1157)
T ss_pred             HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence            5789999999988763 466778888999999999999999999998753 2233344333333                


Q ss_pred             --------------------------HHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018582           66 --------------------------LAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELE  119 (353)
Q Consensus        66 --------------------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  119 (353)
                                                +...|++++|.+.|++..+.  .+.+...+..+...|.+.|++++|...++++.
T Consensus       445 ~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al  522 (1157)
T PRK11447        445 SASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLA  522 (1157)
T ss_pred             CHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                                      33445666666666666554  23344455556666666666666666666655


Q ss_pred             HccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCh---------hHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 018582          120 NRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTAN---------ISYLNMIQVLVNLKDLPGAEKCFKEWES  190 (353)
Q Consensus       120 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~a~~~~~~~~~  190 (353)
                      +..+. +...+..+...+...+++++|+..++.+......++.         ..+......+...|+.++|.++++.   
T Consensus       523 ~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~---  598 (1157)
T PRK11447        523 QQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ---  598 (1157)
T ss_pred             HcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh---
Confidence            43332 3333333444445556666666665554322111111         1122345566777777788777762   


Q ss_pred             cCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCc
Q 018582          191 GCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWV  270 (353)
Q Consensus       191 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  270 (353)
                        .+.+...+..+...+.+.|++++|...|++..+..+ .+...+..++..+...|++++|++.++.+.+..        
T Consensus       599 --~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~--------  667 (1157)
T PRK11447        599 --QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAARAQLAKLPATA--------  667 (1157)
T ss_pred             --CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--------
Confidence              234666778899999999999999999999998743 367889999999999999999999999888764        


Q ss_pred             c-cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC-----ChhhhHHHHHHHHHcCCChHHH--H-HHHHhCCCcc
Q 018582          271 P-SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDL-----GVEVFEPLIRTYAAAGRTSPVM--L-RRLKMEKVEV  339 (353)
Q Consensus       271 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~~~--~-~~m~~~~~~p  339 (353)
                      | +..++..+..++...|++++|.++++++....+..     +...+..+...+.+.|+..+++  + +.|...|+.|
T Consensus       668 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~  745 (1157)
T PRK11447        668 NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP  745 (1157)
T ss_pred             CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence            4 45667778888999999999999999998865422     2246667788899999955544  3 3455555654

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.83  E-value=4.8e-16  Score=143.14  Aligned_cols=330  Identities=10%  Similarity=-0.009  Sum_probs=246.0

Q ss_pred             hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 018582            2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEE   81 (353)
Q Consensus         2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~   81 (353)
                      +++|.++|+...+..+ .+...+..+...+...|++++|+..+++..+.. +.+.. +..+..++...|+.++|...+++
T Consensus        65 ~~~A~~~~~~al~~~P-~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~  141 (765)
T PRK10049         65 WQNSLTLWQKALSLEP-QNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQ  141 (765)
T ss_pred             HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHH
Confidence            5789999999887653 456778888899999999999999999998863 34455 88888899999999999999999


Q ss_pred             HHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH---------------------------------------------
Q 018582           82 MKRDGRVAADWTTFSNLASIYVEAGLFEKAERALK---------------------------------------------  116 (353)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~---------------------------------------------  116 (353)
                      +.+.  .+.+...+..+..++...+..+.|++.++                                             
T Consensus       142 al~~--~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~  219 (765)
T PRK10049        142 ALPR--APQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQY  219 (765)
T ss_pred             HHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHH
Confidence            9996  45566666667777766666665554443                                             


Q ss_pred             -HHHHc-cCCCCHH-HHH----HHHHHHHccCCHHHHHHHHHHHHHhCCC-CChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 018582          117 -ELENR-NAHRDLS-AYQ----FLITLYGQTGNLSEVYRIWRSLRLAFPN-TANISYLNMIQVLVNLKDLPGAEKCFKEW  188 (353)
Q Consensus       117 -~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  188 (353)
                       .+.+. ...|+.. .+.    ..+..+...|++++|+..|+.+.+.+.. |+. .-..+..++...|++++|...|+++
T Consensus       220 ~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~  298 (765)
T PRK10049        220 DALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTEL  298 (765)
T ss_pred             HHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHH
Confidence             33321 1112211 111    1123456779999999999999887642 332 2333577899999999999999998


Q ss_pred             HhcCCCC---cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-----------CCC---hhhHHHHHHHHHccCChHHH
Q 018582          189 ESGCATY---DIRVTNVMIGAYAKEGRLENAEELKERARRRGA-----------DPN---AKTWEIFSDYYLRNGDMKLA  251 (353)
Q Consensus       189 ~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----------~p~---~~~~~~li~~~~~~~~~~~a  251 (353)
                      .+..+..   .......+..++...|++++|...++.+.....           .|+   ...+..+...+...|++++|
T Consensus       299 l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA  378 (765)
T PRK10049        299 FYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQA  378 (765)
T ss_pred             hhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHH
Confidence            8654321   134566677788999999999999999987521           122   12455677888999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCCh--HHHH
Q 018582          252 VDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTS--PVML  329 (353)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~~~~  329 (353)
                      +++++++....       +.+...+..+...+...|++++|++.++++.+..| .+...+..++..+.+.|++.  ++++
T Consensus       379 ~~~l~~al~~~-------P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~P-d~~~l~~~~a~~al~~~~~~~A~~~~  450 (765)
T PRK10049        379 EMRARELAYNA-------PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEP-RNINLEVEQAWTALDLQEWRQMDVLT  450 (765)
T ss_pred             HHHHHHHHHhC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999875       13578889999999999999999999999999998 88888999999999999944  4556


Q ss_pred             HHHHhCCCccCHhHHHHH
Q 018582          330 RRLKMEKVEVSEASKKLL  347 (353)
Q Consensus       330 ~~m~~~~~~p~~~~~~~l  347 (353)
                      +.+.+  ..|+......+
T Consensus       451 ~~ll~--~~Pd~~~~~~~  466 (765)
T PRK10049        451 DDVVA--REPQDPGVQRL  466 (765)
T ss_pred             HHHHH--hCCCCHHHHHH
Confidence            66555  35666554433

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.82  E-value=1e-17  Score=140.16  Aligned_cols=305  Identities=15%  Similarity=0.115  Sum_probs=184.2

Q ss_pred             CchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHH-HHHHH
Q 018582           20 SSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWT-TFSNL   98 (353)
Q Consensus        20 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l   98 (353)
                      -..+|..+.+.+-..|+++.|+..|+.+.+.. +-....|..+..++...|+.+.|.+.|.+..+.   .|+.. ..+.+
T Consensus       115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql---nP~l~ca~s~l  190 (966)
T KOG4626|consen  115 GAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL---NPDLYCARSDL  190 (966)
T ss_pred             HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc---Ccchhhhhcch
Confidence            45789999999999999999999999999853 335678999999999999999999999988884   45433 22334


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc---
Q 018582           99 ASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNL---  175 (353)
Q Consensus        99 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---  175 (353)
                      .......|++++|...+.+..+..+. -..+|+.|...+-..|+...|+..|++.....+. -...|-.+...|...   
T Consensus       191 gnLlka~Grl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~  268 (966)
T KOG4626|consen  191 GNLLKAEGRLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIF  268 (966)
T ss_pred             hHHHHhhcccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcc
Confidence            44455556666666666555443221 2334555555555555555555555555443221 123444444444444   


Q ss_pred             -------------------------------CChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 018582          176 -------------------------------KDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERAR  224 (353)
Q Consensus       176 -------------------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  224 (353)
                                                     |..|.|...|++..+..+. -...|+.|..++-..|+..+|.+.|++.+
T Consensus       269 d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL  347 (966)
T KOG4626|consen  269 DRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKAL  347 (966)
T ss_pred             hHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence                                           5555555555554444322 34455556666555666666666665555


Q ss_pred             hcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc-HHHHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 018582          225 RRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKAV  303 (353)
Q Consensus       225 ~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  303 (353)
                      ... .-.....+.|...+...|.++.|..+|....+-.        |. ...++.|...|-+.|++++|..-+++.+...
T Consensus       348 ~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~--------p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~  418 (966)
T KOG4626|consen  348 RLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF--------PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK  418 (966)
T ss_pred             HhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC--------hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC
Confidence            442 1134455555566666666666666666555543        43 4455666666666666666666666666655


Q ss_pred             CCCChhhhHHHHHHHHHcCCChHHHHHHHHhCCCccCH
Q 018582          304 DDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSE  341 (353)
Q Consensus       304 ~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~  341 (353)
                      | .-...|+.+...|-..|+...++-..++...+.|..
T Consensus       419 P-~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~  455 (966)
T KOG4626|consen  419 P-TFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTF  455 (966)
T ss_pred             c-hHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHH
Confidence            5 455566666666666666555555555555555544

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.79  E-value=1.3e-18  Score=141.78  Aligned_cols=262  Identities=17%  Similarity=0.197  Sum_probs=115.7

Q ss_pred             HHHHHHHhcCCcchHHHHHHHHHHCCCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHh
Q 018582           26 SLMTLYAKTGHPEKIPAIIQEMKASSIMP-DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVE  104 (353)
Q Consensus        26 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  104 (353)
                      .+...+.+.|++++|+++++.......+| |...|..+...+...++++.|...++++...+  +-+...+..++.. ..
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~--~~~~~~~~~l~~l-~~   89 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD--KANPQDYERLIQL-LQ   89 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccc-cc
Confidence            55788889999999999997655443234 44555666677778999999999999999875  3466677778887 79


Q ss_pred             cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhC-CCCChhHHHHHHHHHHhcCChhHHHH
Q 018582          105 AGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAF-PNTANISYLNMIQVLVNLKDLPGAEK  183 (353)
Q Consensus       105 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~  183 (353)
                      .+++++|.+++....+..  ++...+..++..+.+.++++++.++++.+.... ...+...|..+...+.+.|+.++|.+
T Consensus        90 ~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~  167 (280)
T PF13429_consen   90 DGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR  167 (280)
T ss_dssp             ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred             cccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999998876543  456678888899999999999999999987543 34567788889999999999999999


Q ss_pred             HHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 018582          184 CFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGR  263 (353)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~  263 (353)
                      .+++..+..+. |....+.++..+...|+.+++.+++....+.. +.|...+..+..++...|+.++|+.++++..+.. 
T Consensus       168 ~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-  244 (280)
T PF13429_consen  168 DYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-  244 (280)
T ss_dssp             HHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence            99999998654 78889999999999999999999999888763 4566788899999999999999999999999976 


Q ss_pred             CCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 018582          264 GDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKK  301 (353)
Q Consensus       264 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  301 (353)
                            +.|+.....+..++...|+.++|.++.+++.+
T Consensus       245 ------p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  245 ------PDDPLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             ------TT-HHHHHHHHHHHT-----------------
T ss_pred             ------cccccccccccccccccccccccccccccccc
Confidence                  13688889999999999999999999887654

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.78  E-value=3.4e-14  Score=129.18  Aligned_cols=334  Identities=11%  Similarity=0.005  Sum_probs=214.1

Q ss_pred             hHHHHHHHHHHHhcCCCCCc--hhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCC-cchHHHH--HHHHHhcCChhHHH
Q 018582            2 TEKAEALLEKMKELNLGFSS--MPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPD-SYTYNVW--MRALAAVNDISGAE   76 (353)
Q Consensus         2 ~~~A~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l--l~~~~~~~~~~~a~   76 (353)
                      +++|++.|+...+..  |+.  ..+ .++..+...|+.++|+..+++..    .|+ ...+..+  ...+...|++++|.
T Consensus        50 ~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdyd~Ai  122 (822)
T PRK14574         50 TAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRWDQAL  122 (822)
T ss_pred             HHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            456777777776655  332  233 66666677777777777777766    232 2223333  44566667777777


Q ss_pred             HHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHh
Q 018582           77 RVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLA  156 (353)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  156 (353)
                      ++|+++.+.  .+.+...+..++..+.+.++.++|++.++++....  |+...+..++..+...++..+|++.++++.+.
T Consensus       123 ely~kaL~~--dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll~~  198 (822)
T PRK14574        123 ALWQSSLKK--DPTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAVRL  198 (822)
T ss_pred             HHHHHHHhh--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence            777777775  34555666666677777777777777777766542  33333433333333344454466666665544


Q ss_pred             CCCCChhHHHHH--------------------------------------------------------------------
Q 018582          157 FPNTANISYLNM--------------------------------------------------------------------  168 (353)
Q Consensus       157 ~~~~~~~~~~~l--------------------------------------------------------------------  168 (353)
                      .+. +...+..+                                                                    
T Consensus       199 ~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l  277 (822)
T PRK14574        199 APT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNL  277 (822)
T ss_pred             CCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Confidence            321 11111111                                                                    


Q ss_pred             ---------------------HHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 018582          169 ---------------------IQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRG  227 (353)
Q Consensus       169 ---------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  227 (353)
                                           +-++...++..++.+.|+.+...+.+.-..+-..+.++|...+++++|..+|..+....
T Consensus       278 ~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~  357 (822)
T PRK14574        278 LTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD  357 (822)
T ss_pred             HhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence                                 22344456666666667766665544344566788899999999999999999987642


Q ss_pred             -----CCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCC-------CCCCCcccH-HHHHHHHHHHHhcCChhhHHH
Q 018582          228 -----ADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRG-------DGGKWVPSS-ETIRTFMRHFEQEKDVDGAEG  294 (353)
Q Consensus       228 -----~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~  294 (353)
                           ..++......|.-++...+++++|..+++++.+....       |.....||- .....++..+...|+..+|++
T Consensus       358 ~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~  437 (822)
T PRK14574        358 GKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQK  437 (822)
T ss_pred             ccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Confidence                 1223344578899999999999999999999984210       111122342 345556777899999999999


Q ss_pred             HHHHHHhcCCCCChhhhHHHHHHHHHcCCChHHHHHHHHhCCCccCHhHHHHHH
Q 018582          295 FLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLLE  348 (353)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~~~~l~  348 (353)
                      .++++....| -|......+...+...|....+.-..-....+.|+........
T Consensus       438 ~le~l~~~aP-~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~  490 (822)
T PRK14574        438 KLEDLSSTAP-ANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQ  490 (822)
T ss_pred             HHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHH
Confidence            9999999999 9999999999999999994444332233344577766544433

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.77  E-value=3.8e-15  Score=119.75  Aligned_cols=294  Identities=12%  Similarity=0.087  Sum_probs=216.2

Q ss_pred             CCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHH
Q 018582           19 FSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNL   98 (353)
Q Consensus        19 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l   98 (353)
                      .+..+|.++|.+.++-...+.|.++|++......+.+..+||.+|.+-+-..+    .+++.+|.+.. ..||..|+|++
T Consensus       205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqk-m~Pnl~TfNal  279 (625)
T KOG4422|consen  205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQK-MTPNLFTFNAL  279 (625)
T ss_pred             CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhh-cCCchHhHHHH
Confidence            46689999999999999999999999999888788999999999977554333    78899999987 99999999999


Q ss_pred             HHHHHhcCCHHH----HHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHH-HHHHHHHHHHh----CCCC----ChhHH
Q 018582           99 ASIYVEAGLFEK----AERALKELENRNAHRDLSAYQFLITLYGQTGNLSE-VYRIWRSLRLA----FPNT----ANISY  165 (353)
Q Consensus        99 ~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~----~~~~----~~~~~  165 (353)
                      +++..+.|+++.    |.+++.+|++.|++|...+|..+|..+++.+++.+ +..++.++...    ..+|    |...|
T Consensus       280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF  359 (625)
T KOG4422|consen  280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF  359 (625)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence            999999998775    56788889999999999999999999999888855 44444444322    2222    44567


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhcC----CCCc---HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHH
Q 018582          166 LNMIQVLVNLKDLPGAEKCFKEWESGC----ATYD---IRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIF  238 (353)
Q Consensus       166 ~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l  238 (353)
                      ...+..|.+..+.+.|.++..-+....    +.|+   ..-|..+....|.....+.-...|+.|.-.-+-|+..+...+
T Consensus       360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~  439 (625)
T KOG4422|consen  360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL  439 (625)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence            788888999999999988877665321    1222   234556667777777888888888888876677888888888


Q ss_pred             HHHHHccCChHHHHHHHHHHHHcCCCCCCC------------------------------------------------Cc
Q 018582          239 SDYYLRNGDMKLAVDCLEKAIDTGRGDGGK------------------------------------------------WV  270 (353)
Q Consensus       239 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------------------------------------------~~  270 (353)
                      +++..-.+.++-.-++|.++...|..-.+.                                                ..
T Consensus       440 lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~  519 (625)
T KOG4422|consen  440 LRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQD  519 (625)
T ss_pred             HHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcc
Confidence            888888888877777777776665221111                                                11


Q ss_pred             ccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcC-CCCChhhhHHHHHH
Q 018582          271 PSSETIRTFMRHFEQEKDVDGAEGFLEILKKAV-DDLGVEVFEPLIRT  317 (353)
Q Consensus       271 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~  317 (353)
                      ......+.++..+.+.|..++|.+++..+.+.+ -.|-....|+++..
T Consensus       520 ~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El  567 (625)
T KOG4422|consen  520 WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAEL  567 (625)
T ss_pred             CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHH
Confidence            233344555556777888888888888774432 22444445544433

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.76  E-value=1.5e-14  Score=123.37  Aligned_cols=274  Identities=10%  Similarity=0.066  Sum_probs=208.0

Q ss_pred             cCCcchHHHHHHHHHHCCCCCCcchH-HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHH--HHHHHHHhcCCHHH
Q 018582           34 TGHPEKIPAIIQEMKASSIMPDSYTY-NVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFS--NLASIYVEAGLFEK  110 (353)
Q Consensus        34 ~~~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~  110 (353)
                      .|++++|.+.+....+..  +++..+ .....+..+.|+++.|...+.++.+.   .|+.....  .....+...|+++.
T Consensus        97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~---~~~~~~~~~l~~a~l~l~~g~~~~  171 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL---ADNDQLPVEITRVRIQLARNENHA  171 (398)
T ss_pred             CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHCCCHHH
Confidence            699999998887765542  233333 33345558899999999999999874   45554332  34678899999999


Q ss_pred             HHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCh-------hHHHHHHHHHHhcCChhHHHH
Q 018582          111 AERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTAN-------ISYLNMIQVLVNLKDLPGAEK  183 (353)
Q Consensus       111 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~  183 (353)
                      |...++++.+..+. +......+...|.+.|+|++|.+++..+.+.+..++.       .+|..++.......+.+...+
T Consensus       172 Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~  250 (398)
T PRK10747        172 ARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR  250 (398)
T ss_pred             HHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            99999999887755 6788889999999999999999999999887654322       234444555555566677777


Q ss_pred             HHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 018582          184 CFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGR  263 (353)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~  263 (353)
                      +++.+.+.- +.++.....+...+...|+.++|.+++++..+.  .|+...  .++.+....++.+++++..+...+.. 
T Consensus       251 ~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-  324 (398)
T PRK10747        251 WWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-  324 (398)
T ss_pred             HHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-
Confidence            777765442 347788888999999999999999999998874  444422  23444456689999999999998876 


Q ss_pred             CCCCCCcc-cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChHHH
Q 018582          264 GDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVM  328 (353)
Q Consensus       264 ~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~  328 (353)
                             | |...+..+.+.+.+.+++++|.+.|+...+..  |+...+..+...+.+.|+..++.
T Consensus       325 -------P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~--P~~~~~~~La~~~~~~g~~~~A~  381 (398)
T PRK10747        325 -------GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR--PDAYDYAWLADALDRLHKPEEAA  381 (398)
T ss_pred             -------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHcCCHHHHH
Confidence                   5 45678888899999999999999999998765  67788889999999999955554

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.76  E-value=6.2e-14  Score=127.56  Aligned_cols=313  Identities=12%  Similarity=0.041  Sum_probs=223.3

Q ss_pred             hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 018582            2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEE   81 (353)
Q Consensus         2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~   81 (353)
                      +++|+++|+.+.+..+ .++..+..++..+...++.++|++.++++...  .|+...+..++..+...++..+|++.+++
T Consensus       118 yd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ek  194 (822)
T PRK14574        118 WDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSE  194 (822)
T ss_pred             HHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            4677777777777653 34556666667777777777777777777664  35555554443344344555557777777


Q ss_pred             HHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH---------------------------------------------
Q 018582           82 MKRDGRVAADWTTFSNLASIYVEAGLFEKAERALK---------------------------------------------  116 (353)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~---------------------------------------------  116 (353)
                      +.+.  .+.+...+..+..++.+.|-...|.++..                                             
T Consensus       195 ll~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala  272 (822)
T PRK14574        195 AVRL--APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALA  272 (822)
T ss_pred             HHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence            7775  35556666666666665554443333322                                             


Q ss_pred             ---HHHHc-cCCCCH-HHH----HHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHH
Q 018582          117 ---ELENR-NAHRDL-SAY----QFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKE  187 (353)
Q Consensus       117 ---~~~~~-~~~~~~-~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  187 (353)
                         .+... +..|.. ..|    .-.+-++...|+..++++.|+.+...+.+....+-..+.++|...+++++|..+++.
T Consensus       273 ~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~  352 (822)
T PRK14574        273 DYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSS  352 (822)
T ss_pred             HHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence               21110 011111 111    122346678899999999999999888665667888999999999999999999999


Q ss_pred             HHhcC-----CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-----------CCC--h-hhHHHHHHHHHccCCh
Q 018582          188 WESGC-----ATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGA-----------DPN--A-KTWEIFSDYYLRNGDM  248 (353)
Q Consensus       188 ~~~~~-----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----------~p~--~-~~~~~li~~~~~~~~~  248 (353)
                      +....     ..++......|..+|...+++++|..+++.+.+..+           .|+  - ..+..++..+...|+.
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl  432 (822)
T PRK14574        353 LYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDL  432 (822)
T ss_pred             HhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCH
Confidence            87643     133444467899999999999999999999987421           122  1 2345567778899999


Q ss_pred             HHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChHH
Q 018582          249 KLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPV  327 (353)
Q Consensus       249 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~  327 (353)
                      .+|++.++++....       +-|......+...+...|.+..|.+.++......| .+..+....+.++...|++..+
T Consensus       433 ~~Ae~~le~l~~~a-------P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P-~~~~~~~~~~~~al~l~e~~~A  503 (822)
T PRK14574        433 PTAQKKLEDLSSTA-------PANQNLRIALASIYLARDLPRKAEQELKAVESLAP-RSLILERAQAETAMALQEWHQM  503 (822)
T ss_pred             HHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCC-ccHHHHHHHHHHHHhhhhHHHH
Confidence            99999999998886       14788999999999999999999999999888887 8888999999999999995544

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.76  E-value=1.5e-14  Score=112.17  Aligned_cols=289  Identities=17%  Similarity=0.208  Sum_probs=225.0

Q ss_pred             cCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcH--HHHHHHHHHHHhcCCHHHH
Q 018582           34 TGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADW--TTFSNLASIYVEAGLFEKA  111 (353)
Q Consensus        34 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a  111 (353)
                      +.+.++|.++|-+|.+.. +-+..+.-++.+.|-+.|.++.|+++.+.+.++.+.+.+.  .....|..=|...|-+|.|
T Consensus        48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA  126 (389)
T COG2956          48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA  126 (389)
T ss_pred             hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence            577899999999998842 3344566778899999999999999999999864222222  2335577889999999999


Q ss_pred             HHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChh----HHHHHHHHHHhcCChhHHHHHHHH
Q 018582          112 ERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANI----SYLNMIQVLVNLKDLPGAEKCFKE  187 (353)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~  187 (353)
                      +.+|..+.+.+.. -..+...|+..|-...+|++|+++-+++...+..+...    .|..+...+....+.+.|..++.+
T Consensus       127 E~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k  205 (389)
T COG2956         127 EDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK  205 (389)
T ss_pred             HHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            9999999875433 56688899999999999999999999998887665443    466677777778899999999999


Q ss_pred             HHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCC
Q 018582          188 WESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGG  267 (353)
Q Consensus       188 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~  267 (353)
                      ..+.+++ .+..--.+.+.+...|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++....+.++.+..     
T Consensus       206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~-----  279 (389)
T COG2956         206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN-----  279 (389)
T ss_pred             HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc-----
Confidence            9987744 6677777889999999999999999999998655556778889999999999999999999999986     


Q ss_pred             CCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCC---ChH--HHHHHHHhC
Q 018582          268 KWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR---TSP--VMLRRLKME  335 (353)
Q Consensus       268 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~--~~~~~m~~~  335 (353)
                         +....-..+...-......+.|...+.+-....  |+...+..|+..-.....   +.+  .+++.|...
T Consensus       280 ---~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~--Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge  347 (389)
T COG2956         280 ---TGADAELMLADLIELQEGIDAAQAYLTRQLRRK--PTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE  347 (389)
T ss_pred             ---CCccHHHHHHHHHHHhhChHHHHHHHHHHHhhC--CcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence               555555556555555566777777776655544  788888888887655443   222  334555544

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.74  E-value=3.4e-14  Score=121.17  Aligned_cols=281  Identities=11%  Similarity=0.117  Sum_probs=216.1

Q ss_pred             hHHHHHHHHHHHhcCCCCCchhHHHH-HHHHHhcCCcchHHHHHHHHHHCCCCCCcchHH--HHHHHHHhcCChhHHHHH
Q 018582            2 TEKAEALLEKMKELNLGFSSMPFNSL-MTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYN--VWMRALAAVNDISGAERV   78 (353)
Q Consensus         2 ~~~A~~~~~~m~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~   78 (353)
                      +++|++.+..-.+..  +++..+..+ .....+.|+++.|.+.+.++.+.  .|+.....  .....+...|+++.|...
T Consensus       100 ~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~  175 (398)
T PRK10747        100 YQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHG  175 (398)
T ss_pred             HHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence            567777777655532  233333333 44458899999999999999874  56665443  335688899999999999


Q ss_pred             HHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCH-------HHHHHHHHHHHccCCHHHHHHHHH
Q 018582           79 IEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDL-------SAYQFLITLYGQTGNLSEVYRIWR  151 (353)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~  151 (353)
                      ++++.+.  .|-+......+...|.+.|++++|.+++..+.+.+..++.       .+|..++.......+.+...++++
T Consensus       176 l~~~~~~--~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~  253 (398)
T PRK10747        176 VDKLLEV--APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK  253 (398)
T ss_pred             HHHHHhc--CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            9999987  4667888899999999999999999999999887665322       133344444445556667777777


Q ss_pred             HHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 018582          152 SLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPN  231 (353)
Q Consensus       152 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~  231 (353)
                      .+...- +.+......+...+...|+.++|.+++.+..+..  ++...  .++.+....++.+++.+..+...+..+ -|
T Consensus       254 ~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P-~~  327 (398)
T PRK10747        254 NQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHG-DT  327 (398)
T ss_pred             hCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHH--HHHHhhccCCChHHHHHHHHHHHhhCC-CC
Confidence            664432 3467788889999999999999999999988853  34422  233444456999999999999988743 35


Q ss_pred             hhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 018582          232 AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKA  302 (353)
Q Consensus       232 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  302 (353)
                      ...+..+...|.+.+++++|.+.|+...+..        |+...+..+...+.+.|+.++|...+++....
T Consensus       328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~--------P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~  390 (398)
T PRK10747        328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQR--------PDAYDYAWLADALDRLHKPEEAAAMRRDGLML  390 (398)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            6678889999999999999999999999987        99999999999999999999999999987653

>TIGR00540 hemY_coli hemY protein

Probab=99.74  E-value=3.1e-14  Score=122.09  Aligned_cols=287  Identities=10%  Similarity=0.027  Sum_probs=210.2

Q ss_pred             HHHHHHHH--HhcCCcchHHHHHHHHHHCCCCCCcchH-HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcH--HHHHHH
Q 018582           24 FNSLMTLY--AKTGHPEKIPAIIQEMKASSIMPDSYTY-NVWMRALAAVNDISGAERVIEEMKRDGRVAADW--TTFSNL   98 (353)
Q Consensus        24 ~~~ll~~~--~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l   98 (353)
                      +..+..+.  ...|+++.|.+.+.+..+.  .|+...+ -....+..+.|+.+.|.+.+.+..+.   .|+.  .+....
T Consensus        85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~---~p~~~l~~~~~~  159 (409)
T TIGR00540        85 QKQTEEALLKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL---AGNDNILVEIAR  159 (409)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCcCchHHHHHH
Confidence            34444443  3479999999999887764  3554443 44457788899999999999998874   3444  344446


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHH-HHHHHH---Hh
Q 018582           99 ASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYL-NMIQVL---VN  174 (353)
Q Consensus        99 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~  174 (353)
                      ...+...|+++.|...++.+.+..+. +..++..+...+...|++++|.+.+..+.+.+.. +...+. .-..++   ..
T Consensus       160 a~l~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~  237 (409)
T TIGR00540       160 TRILLAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLD  237 (409)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHH
Confidence            88899999999999999999988765 7778899999999999999999999999988654 333331 111221   23


Q ss_pred             cCChhHHHHHHHHHHhcCCC---CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhh---HHHHHHHHHccCCh
Q 018582          175 LKDLPGAEKCFKEWESGCAT---YDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKT---WEIFSDYYLRNGDM  248 (353)
Q Consensus       175 ~~~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~---~~~li~~~~~~~~~  248 (353)
                      .+..+.+.+.+..+.+..+.   .+...+..+...+...|+.++|.+++++..+..  ||...   ...........++.
T Consensus       238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~  315 (409)
T TIGR00540       238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDN  315 (409)
T ss_pred             HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCCh
Confidence            33333334455555444322   378889999999999999999999999999863  34332   12222223445788


Q ss_pred             HHHHHHHHHHHHcCCCCCCCCccc-H--HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCCh
Q 018582          249 KLAVDCLEKAIDTGRGDGGKWVPS-S--ETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTS  325 (353)
Q Consensus       249 ~~a~~~~~~~~~~~~~~~~~~~~~-~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  325 (353)
                      +.+.+.++...+..        |+ +  ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+..
T Consensus       316 ~~~~~~~e~~lk~~--------p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~  387 (409)
T TIGR00540       316 EKLEKLIEKQAKNV--------DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKA  387 (409)
T ss_pred             HHHHHHHHHHHHhC--------CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHH
Confidence            89999999988875        44 4  5677899999999999999999996555444478888899999999999944


Q ss_pred             HH
Q 018582          326 PV  327 (353)
Q Consensus       326 ~~  327 (353)
                      ++
T Consensus       388 ~A  389 (409)
T TIGR00540       388 EA  389 (409)
T ss_pred             HH
Confidence            43

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.74  E-value=1.5e-13  Score=127.54  Aligned_cols=320  Identities=13%  Similarity=0.081  Sum_probs=208.9

Q ss_pred             HHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHC-C-CCCCcchHHHHHHHHHhcCC----------
Q 018582            4 KAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKAS-S-IMPDSYTYNVWMRALAAVND----------   71 (353)
Q Consensus         4 ~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~-~~p~~~~~~~ll~~~~~~~~----------   71 (353)
                      +|.+.+..|.+... -+....-.+--...+.|+.++|.++|+..... + ..++.....-++..+.+.+.          
T Consensus       360 ~~~~~~~~~y~~~~-~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l  438 (987)
T PRK09782        360 EALRLARLLYQQEP-ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAIL  438 (987)
T ss_pred             HHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHh
Confidence            45555666655421 34555555555667788888888888877652 1 12222233355555555544          


Q ss_pred             ---------------hhHHHHHHHHHHHc-CCCCC--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHH
Q 018582           72 ---------------ISGAERVIEEMKRD-GRVAA--DWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFL  133 (353)
Q Consensus        72 ---------------~~~a~~~~~~~~~~-~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  133 (353)
                                     ..++...++..... +..++  +...|..+..++.. ++.++|...+.+.....  |+......+
T Consensus       439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~l  515 (987)
T PRK09782        439 SKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAV  515 (987)
T ss_pred             ccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHH
Confidence                           11112222222221 10244  56677777777776 77878888777776543  454443344


Q ss_pred             HHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCh
Q 018582          134 ITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRL  213 (353)
Q Consensus       134 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  213 (353)
                      ...+...|++++|...|+++...  .|+...+..+..++.+.|+.++|...+++..+..+. +...+..+.......|++
T Consensus       516 A~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~  592 (987)
T PRK09782        516 AYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQP  592 (987)
T ss_pred             HHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCH
Confidence            45556788888888888876544  233445566677778888888888888888776533 333333344444455888


Q ss_pred             HHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcc-cHHHHHHHHHHHHhcCChhhH
Q 018582          214 ENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGA  292 (353)
Q Consensus       214 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a  292 (353)
                      ++|...+++..+.  .|+...+..+...+.+.|++++|+..+++.....        | +...+..+..++...|++++|
T Consensus       593 ~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~--------Pd~~~a~~nLG~aL~~~G~~eeA  662 (987)
T PRK09782        593 ELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE--------PNNSNYQAALGYALWDSGDIAQS  662 (987)
T ss_pred             HHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHH
Confidence            8888888888775  4567778888888888888888888888888876        4 456777777788888888888


Q ss_pred             HHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChHHHHHHHHhCCCccCH
Q 018582          293 EGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSE  341 (353)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~  341 (353)
                      ...+++..+..| .++..+..+..++...|+.++++-..-+...+.|+.
T Consensus       663 i~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~  710 (987)
T PRK09782        663 REMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ  710 (987)
T ss_pred             HHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence            888888888887 778888888888888888666554444444455554

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.73  E-value=5.1e-14  Score=130.65  Aligned_cols=283  Identities=13%  Similarity=0.025  Sum_probs=211.9

Q ss_pred             CchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 018582           20 SSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLA   99 (353)
Q Consensus        20 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~   99 (353)
                      +...|..+..++.. +++++|...|.+....  .|+......+...+...|++++|...|+++..   .+|+...+..+.
T Consensus       476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~---~~p~~~a~~~la  549 (987)
T PRK09782        476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISL---HDMSNEDLLAAA  549 (987)
T ss_pred             CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhc---cCCCcHHHHHHH
Confidence            56677888877776 7888899988887764  36654444445555688999999999998766   345555566778


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChh
Q 018582          100 SIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLP  179 (353)
Q Consensus       100 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  179 (353)
                      ..+.+.|++++|...+++..+..+. +...+..+.......|++++|...+++..+..+  +...+..+..++.+.|+++
T Consensus       550 ~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P--~~~a~~~LA~~l~~lG~~d  626 (987)
T PRK09782        550 NTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNIAP--SANAYVARATIYRQRHNVP  626 (987)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCCHH
Confidence            8888999999999999988876533 333343444455566999999999998887654  5778888889999999999


Q ss_pred             HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHH
Q 018582          180 GAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAI  259 (353)
Q Consensus       180 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~  259 (353)
                      +|...+++.....+. +...++.+..++...|++++|+..|++..+..+ -+...+..+..++...|++++|+..+++..
T Consensus       627 eA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al  704 (987)
T PRK09782        627 AAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVI  704 (987)
T ss_pred             HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            999999999888754 778888888899999999999999999887643 356778888899999999999999999998


Q ss_pred             HcCCCCCCCCccc-HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCC
Q 018582          260 DTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR  323 (353)
Q Consensus       260 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  323 (353)
                      +..        |+ ..+.........+..+++.+.+-+++....++  +..+.......+...++
T Consensus       705 ~l~--------P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~--~~~a~~~~g~~~~~~~~  759 (987)
T PRK09782        705 DDI--------DNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF--DSSIGLRSGAMSTANNN  759 (987)
T ss_pred             hcC--------CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc--cchhccccchHhhhccc
Confidence            876        54 35555556666677778888887777766554  22255555555554444

>TIGR00540 hemY_coli hemY protein

Probab=99.73  E-value=5.3e-14  Score=120.66  Aligned_cols=283  Identities=12%  Similarity=0.082  Sum_probs=209.4

Q ss_pred             ChHHHHHHHHHHHhcCCCCCchh-HHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcc--hHHHHHHHHHhcCChhHHHH
Q 018582            1 MTEKAEALLEKMKELNLGFSSMP-FNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSY--TYNVWMRALAAVNDISGAER   77 (353)
Q Consensus         1 ~~~~A~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~   77 (353)
                      +++.|.+.+....+..  |+... +-....+..+.|+++.|.+.+.+..+.  .|+..  ........+...|+++.|..
T Consensus        99 ~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al~  174 (409)
T TIGR00540        99 DYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAARH  174 (409)
T ss_pred             CHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence            3678888888776654  54433 344457788899999999999998764  35554  33345788889999999999


Q ss_pred             HHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHH-HHHH---HHHccCCHHHHHHHHHHH
Q 018582           78 VIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQ-FLIT---LYGQTGNLSEVYRIWRSL  153 (353)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~---~~~~~~~~~~a~~~~~~~  153 (353)
                      .++.+.+.  .|-+..+...+...+.+.|++++|.+.+..+.+.+.. +...+. .-..   .....+..++..+.+..+
T Consensus       175 ~l~~l~~~--~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~  251 (409)
T TIGR00540       175 GVDKLLEM--APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW  251 (409)
T ss_pred             HHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            99999997  4667788899999999999999999999999988654 333332 1112   223333334444455555


Q ss_pred             HHhCCC---CChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHH--HHhcCChHHHHHHHHHHHhcCC
Q 018582          154 RLAFPN---TANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGA--YAKEGRLENAEELKERARRRGA  228 (353)
Q Consensus       154 ~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~~~~~~~  228 (353)
                      .+..+.   .+...+..+...+...|+.++|.+++++..+..+......+. ++..  ....++.+.+.+.++...+.  
T Consensus       252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~lk~--  328 (409)
T TIGR00540       252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQAKN--  328 (409)
T ss_pred             HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH-HHHHhhhcCCCChHHHHHHHHHHHHh--
Confidence            544332   367788889999999999999999999999875443221111 2222  23357788899999888876  


Q ss_pred             CCC-h--hhHHHHHHHHHccCChHHHHHHHHH--HHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 018582          229 DPN-A--KTWEIFSDYYLRNGDMKLAVDCLEK--AIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKK  301 (353)
Q Consensus       229 ~p~-~--~~~~~li~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  301 (353)
                      .|+ .  ....++...+.+.|++++|.+.|+.  ..+..        |+...+..+...+.+.|+.++|.+++++...
T Consensus       329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~--------p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQ--------LDANDLAMAADAFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344 3  4566888999999999999999995  54444        8988899999999999999999999998654

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.72  E-value=1.2e-16  Score=130.21  Aligned_cols=251  Identities=19%  Similarity=0.189  Sum_probs=114.9

Q ss_pred             hHHHHHHHHHHHhcC-CCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 018582            2 TEKAEALLEKMKELN-LGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIE   80 (353)
Q Consensus         2 ~~~A~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~   80 (353)
                      +++|+++++...... .+.|...|..+.......++++.|.+.++++...+ +-+...+..++.. ...+++++|.+++.
T Consensus        24 ~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~~~~A~~~~~  101 (280)
T PF13429_consen   24 YEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGDPEEALKLAE  101 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-cccccccccccccc
Confidence            578999996554443 33456667777777888999999999999998865 2356677777777 79999999999998


Q ss_pred             HHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcc-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC
Q 018582           81 EMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRN-AHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN  159 (353)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  159 (353)
                      ...+.   .++...+..++..+.+.++++++..+++.+.... .+.+...|..+...+.+.|++++|++.+++..+..+.
T Consensus       102 ~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~  178 (280)
T PF13429_consen  102 KAYER---DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD  178 (280)
T ss_dssp             -------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT
T ss_pred             ccccc---ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            87764   3566777889999999999999999999986533 3457788899999999999999999999999987653


Q ss_pred             CChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHH
Q 018582          160 TANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFS  239 (353)
Q Consensus       160 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li  239 (353)
                       |......++..+...|+.+++.+++....+.. +.|...+..+..+|...|+.++|...|++..+.. +.|......+.
T Consensus       179 -~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a  255 (280)
T PF13429_consen  179 -DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYA  255 (280)
T ss_dssp             --HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHH
T ss_pred             -CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccccccccccc
Confidence             57778889999999999999999999888765 4466788899999999999999999999998863 33788888999


Q ss_pred             HHHHccCChHHHHHHHHHHHH
Q 018582          240 DYYLRNGDMKLAVDCLEKAID  260 (353)
Q Consensus       240 ~~~~~~~~~~~a~~~~~~~~~  260 (353)
                      .++...|+.++|.++.++..+
T Consensus       256 ~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  256 DALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             HHHT-----------------
T ss_pred             ccccccccccccccccccccc
Confidence            999999999999999887654

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.71  E-value=2.3e-13  Score=105.73  Aligned_cols=285  Identities=16%  Similarity=0.141  Sum_probs=225.5

Q ss_pred             hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcc------hHHHHHHHHHhcCChhHH
Q 018582            2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSY------TYNVWMRALAAVNDISGA   75 (353)
Q Consensus         2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~------~~~~ll~~~~~~~~~~~a   75 (353)
                      .|+|.++|-+|.+.+. -+..+.-+|.+.|.+.|..+.|+.+.+.+.++   ||..      ....+.+-|...|-++.|
T Consensus        51 ~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~DRA  126 (389)
T COG2956          51 PDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLDRA  126 (389)
T ss_pred             cchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence            5799999999998542 34556678889999999999999999998875   4432      345567778999999999


Q ss_pred             HHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCC----HHHHHHHHHHHHccCCHHHHHHHHH
Q 018582           76 ERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRD----LSAYQFLITLYGQTGNLSEVYRIWR  151 (353)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~  151 (353)
                      +++|..+.+.|  ..-......|+..|-...+|++|+++-+++.+.+..+.    ...|..+...+....+.+.|..++.
T Consensus       127 E~~f~~L~de~--efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~  204 (389)
T COG2956         127 EDIFNQLVDEG--EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK  204 (389)
T ss_pred             HHHHHHHhcch--hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            99999999875  34455677899999999999999999999988776643    2356677777778899999999999


Q ss_pred             HHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 018582          152 SLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPN  231 (353)
Q Consensus       152 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~  231 (353)
                      +..+..++ ....--.+.+.....|+++.|.+.++.+.+.++..-..+...|..+|...|+.++....+.++.+...  .
T Consensus       205 kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--g  281 (389)
T COG2956         205 KALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT--G  281 (389)
T ss_pred             HHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--C
Confidence            99887654 34444567788999999999999999999998887888899999999999999999999999988643  4


Q ss_pred             hhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHh---cCChhhHHHHHHHHHhcC
Q 018582          232 AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQ---EKDVDGAEGFLEILKKAV  303 (353)
Q Consensus       232 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~  303 (353)
                      ...-..+.+.-....-.+.|..++.+-+...        |+...+..++..-..   .|...+....++.|....
T Consensus       282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~--------Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~  348 (389)
T COG2956         282 ADAELMLADLIELQEGIDAAQAYLTRQLRRK--------PTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQ  348 (389)
T ss_pred             ccHHHHHHHHHHHhhChHHHHHHHHHHHhhC--------CcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHH
Confidence            4444455555555556677777777777665        999999999986543   344666666777776543

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.71  E-value=1.3e-14  Score=122.76  Aligned_cols=289  Identities=15%  Similarity=0.069  Sum_probs=173.6

Q ss_pred             CcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCcHHHHHHHHHHHHhcCCHHHHHHH
Q 018582           36 HPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRV-AADWTTFSNLASIYVEAGLFEKAERA  114 (353)
Q Consensus        36 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~  114 (353)
                      +..+|+..|.+...+ +.-+......+.++|...+++++|.++|+.+.+..+. .-+..+|.+.+--+-+    +-++..
T Consensus       334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~  408 (638)
T KOG1126|consen  334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY  408 (638)
T ss_pred             HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence            345677777775443 2333345556667777777777777777777664211 1234455444433221    112222


Q ss_pred             H-HHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 018582          115 L-KELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCA  193 (353)
Q Consensus       115 ~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  193 (353)
                      + +.+.+..+ -.+.+|.++.+.|.-.++.+.|++.|++..+..+ -..++|+.+..-+.....+|.|...|+..+...+
T Consensus       409 Laq~Li~~~~-~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp-~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~  486 (638)
T KOG1126|consen  409 LAQDLIDTDP-NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP-RFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP  486 (638)
T ss_pred             HHHHHHhhCC-CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC-ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence            2 22222222 2456777777777777777777777777665432 2556777777777777777777777777664432


Q ss_pred             CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccH
Q 018582          194 TYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSS  273 (353)
Q Consensus       194 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  273 (353)
                      . +-..|-.+.-.|.+.++++.|.-.|+...+.++. +.+....+...+.+.|+.++|+++++++.....       -|+
T Consensus       487 r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-------kn~  557 (638)
T KOG1126|consen  487 R-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-------KNP  557 (638)
T ss_pred             h-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-------CCc
Confidence            2 3334445566677777777777777777665432 445555666666777777777777777776652       133


Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChHHHHHHHHhCCCccCH
Q 018582          274 ETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSE  341 (353)
Q Consensus       274 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~  341 (353)
                      ..--..+..+...++.++|+..++++++.-| .+...|..+...|-+.|+...++...-.+.++.|..
T Consensus       558 l~~~~~~~il~~~~~~~eal~~LEeLk~~vP-~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg  624 (638)
T KOG1126|consen  558 LCKYHRASILFSLGRYVEALQELEELKELVP-QESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG  624 (638)
T ss_pred             hhHHHHHHHHHhhcchHHHHHHHHHHHHhCc-chHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence            3333344455566777777777777777666 666777777777777777666666655555555543

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.70  E-value=1e-14  Score=123.48  Aligned_cols=286  Identities=13%  Similarity=0.048  Sum_probs=228.5

Q ss_pred             HHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCC--CCCCcchHHHHHHHHHhcCChhHHHHHH-
Q 018582            3 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASS--IMPDSYTYNVWMRALAAVNDISGAERVI-   79 (353)
Q Consensus         3 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~-   79 (353)
                      ++|...|..+...-. .+..+...+..+|.+.+++++|..+|+...+..  .--+...|.+.+.-+-.    +-++..+ 
T Consensus       336 ~~A~~~~~klp~h~~-nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~La  410 (638)
T KOG1126|consen  336 REALNLFEKLPSHHY-NTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYLA  410 (638)
T ss_pred             HHHHHHHHhhHHhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHHH
Confidence            678999999665432 344666778899999999999999999998752  12256678877754422    2233333 


Q ss_pred             HHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC
Q 018582           80 EEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN  159 (353)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  159 (353)
                      +.+...  .+....+|.++.++|.-+++.+.|++.|++..+..+. ...+|+.+..-+.....+|.|...|+......+ 
T Consensus       411 q~Li~~--~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~-  486 (638)
T KOG1126|consen  411 QDLIDT--DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDP-  486 (638)
T ss_pred             HHHHhh--CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc-
Confidence            334444  5677889999999999999999999999999886443 788999999999999999999999998754322 


Q ss_pred             CChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHH
Q 018582          160 TANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFS  239 (353)
Q Consensus       160 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li  239 (353)
                      .+-..|-.+...|.+.++++.|+-.|++..+-++. +.+....+...+-+.|+.++|++++++......+ |+..--..+
T Consensus       487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~  564 (638)
T KOG1126|consen  487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRA  564 (638)
T ss_pred             hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHH
Confidence            12235666788999999999999999999988755 7888888899999999999999999999876544 555555677


Q ss_pred             HHHHccCChHHHHHHHHHHHHcCCCCCCCCccc-HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC
Q 018582          240 DYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLG  307 (353)
Q Consensus       240 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  307 (353)
                      ..+...+++++|+..++++.+.-        |+ ...+..+...|.+.|+.+.|..-|--+.+.+|++.
T Consensus       565 ~il~~~~~~~eal~~LEeLk~~v--------P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~  625 (638)
T KOG1126|consen  565 SILFSLGRYVEALQELEELKELV--------PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA  625 (638)
T ss_pred             HHHHhhcchHHHHHHHHHHHHhC--------cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence            78888999999999999999974        65 56778888899999999999999999998888544

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.69  E-value=6.7e-13  Score=106.12  Aligned_cols=290  Identities=16%  Similarity=0.105  Sum_probs=230.0

Q ss_pred             HHHHHHh--cCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHh
Q 018582           27 LMTLYAK--TGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVE  104 (353)
Q Consensus        27 ll~~~~~--~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  104 (353)
                      +..+..+  .|+|.+|.++..+-.+.+ +.....|..-..+.-+.||.+.+-..+.+..+.. ..++..+.-+.......
T Consensus        88 ~~egl~~l~eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-~~~~l~v~ltrarlll~  165 (400)
T COG3071          88 LNEGLLKLFEGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA-GDDTLAVELTRARLLLN  165 (400)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC-CCchHHHHHHHHHHHHh
Confidence            3444433  799999999999988776 2334456666678889999999999999999864 45677777888899999


Q ss_pred             cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChh-------HHHHHHHHHHhcCC
Q 018582          105 AGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANI-------SYLNMIQVLVNLKD  177 (353)
Q Consensus       105 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~  177 (353)
                      .|+.+.|..-++++.+.++. .........++|.+.|++..+..++..+.+.+.-.++.       +|..+++-....+.
T Consensus       166 ~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~  244 (400)
T COG3071         166 RRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG  244 (400)
T ss_pred             CCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999999999999887766 67788999999999999999999999999988755543       67777776666666


Q ss_pred             hhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHH
Q 018582          178 LPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEK  257 (353)
Q Consensus       178 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~  257 (353)
                      .+.-...++..... ...++..-.+++.-+.++|+.++|.++..+..+++..|+    -...-.+.+-++...-++..++
T Consensus       245 ~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~  319 (400)
T COG3071         245 SEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEK  319 (400)
T ss_pred             chHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHH
Confidence            66666677765543 244567778889999999999999999999998877665    2233456677888888888888


Q ss_pred             HHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCC--ChHHHHHHHH
Q 018582          258 AIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR--TSPVMLRRLK  333 (353)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~  333 (353)
                      -.+...       .++..+.+|...|.+.+.|.+|...|+...+..  |+..+|+.+..++.+.|+  .+.+...+-.
T Consensus       320 ~l~~h~-------~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~--~s~~~~~~la~~~~~~g~~~~A~~~r~e~L  388 (400)
T COG3071         320 WLKQHP-------EDPLLLSTLGRLALKNKLWGKASEALEAALKLR--PSASDYAELADALDQLGEPEEAEQVRREAL  388 (400)
T ss_pred             HHHhCC-------CChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC--CChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            777641       456889999999999999999999999766655  799999999999999999  4455554433

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.69  E-value=5.6e-13  Score=107.51  Aligned_cols=308  Identities=13%  Similarity=0.146  Sum_probs=214.0

Q ss_pred             HHHHHHHHHHHhcCCCCCchhHHHHHHHHH--hcCCcchH-HHHHHHHHHC-------------------CCCCCcchHH
Q 018582            3 EKAEALLEKMKELNLGFSSMPFNSLMTLYA--KTGHPEKI-PAIIQEMKAS-------------------SIMPDSYTYN   60 (353)
Q Consensus         3 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~--~~~~~~~a-~~~~~~m~~~-------------------~~~p~~~~~~   60 (353)
                      ..+.-+++.|.+.|++.+...--.|++.-+  .+.++.-| .+.|-.|...                   -.+-+..+|.
T Consensus       132 KDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT~et~s  211 (625)
T KOG4422|consen  132 KDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKTDETVS  211 (625)
T ss_pred             chhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCCchhHH
Confidence            456668888888887666666555554322  22222111 2222223221                   1234567899


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcc
Q 018582           61 VWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQT  140 (353)
Q Consensus        61 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  140 (353)
                      ++|.+.++-...+.|.++|++..... .+.+..+||.+|.+-.-.-    ..+++.+|......||..|+|++++...+.
T Consensus       212 ~mI~Gl~K~~~~ERA~~L~kE~~~~k-~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL~c~akf  286 (625)
T KOG4422|consen  212 IMIAGLCKFSSLERARELYKEHRAAK-GKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALLSCAAKF  286 (625)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHhh-heeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHHHHHHHh
Confidence            99999999999999999999888766 7888889998887654332    277888888888899999999999999999


Q ss_pred             CCHHH----HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhH-HHHHHHHHHh----cCC----CCcHHHHHHHHHHH
Q 018582          141 GNLSE----VYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPG-AEKCFKEWES----GCA----TYDIRVTNVMIGAY  207 (353)
Q Consensus       141 ~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~----~~~~~~~~~li~~~  207 (353)
                      |+++.    |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++..    ..+    +.|...|...+..|
T Consensus       287 g~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic  366 (625)
T KOG4422|consen  287 GKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSIC  366 (625)
T ss_pred             cchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHH
Confidence            98765    45677788889999999999999998888887755 4445555432    112    22556667777788


Q ss_pred             HhcCChHHHHHHHHHHHhc----CCCCCh---hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHH
Q 018582          208 AKEGRLENAEELKERARRR----GADPNA---KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFM  280 (353)
Q Consensus       208 ~~~g~~~~a~~~~~~~~~~----~~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  280 (353)
                      .+..+.+.|.++-.-+...    -+.|+.   .-|..+....++....+.....|+.|.-.-      ..|+..+...++
T Consensus       367 ~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~------y~p~~~~m~~~l  440 (625)
T KOG4422|consen  367 SSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSA------YFPHSQTMIHLL  440 (625)
T ss_pred             HHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce------ecCCchhHHHHH
Confidence            8888888888776555421    123332   345667777788888888888888887664      338888888899


Q ss_pred             HHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHc
Q 018582          281 RHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAA  321 (353)
Q Consensus       281 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  321 (353)
                      ++....|.++-.-++|..++..|...+.....-+...+++.
T Consensus       441 rA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~  481 (625)
T KOG4422|consen  441 RALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARD  481 (625)
T ss_pred             HHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcC
Confidence            99888899998888888888776544444444444444443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.67  E-value=2.4e-12  Score=102.98  Aligned_cols=287  Identities=13%  Similarity=0.078  Sum_probs=228.0

Q ss_pred             ChHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 018582            1 MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIE   80 (353)
Q Consensus         1 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~   80 (353)
                      ++.+|+++...-.+.+- .....|..-..+--+.|+.+.+-..+.+..+.--.++...+-+..+.....|+.+.|..-..
T Consensus        99 ~~~qAEkl~~rnae~~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~  177 (400)
T COG3071          99 DFQQAEKLLRRNAEHGE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVD  177 (400)
T ss_pred             cHHHHHHHHHHhhhcCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHH
Confidence            36788888888777664 23345666667788899999999999999875224555566677788899999999999999


Q ss_pred             HHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCH-------HHHHHHHHHHHccCCHHHHHHHHHHH
Q 018582           81 EMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDL-------SAYQFLITLYGQTGNLSEVYRIWRSL  153 (353)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~  153 (353)
                      ++.+.  .+-+..+.....++|.+.|++.....++..+.+.+.-.+.       .+|..+++-....+..+.-...++..
T Consensus       178 ~ll~~--~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~  255 (400)
T COG3071         178 QLLEM--TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ  255 (400)
T ss_pred             HHHHh--CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence            99987  4677888899999999999999999999999998876553       46777777777777777766677765


Q ss_pred             HHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChh
Q 018582          154 RLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAK  233 (353)
Q Consensus       154 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~  233 (353)
                      ... .+-++..-.+++.-+.+.|+.++|.++..+..+.+..|+.   . ..-.+.+-++.+.-.+..+...+.. +-++.
T Consensus       256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---~-~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~  329 (400)
T COG3071         256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---C-RLIPRLRPGDPEPLIKAAEKWLKQH-PEDPL  329 (400)
T ss_pred             cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH---H-HHHhhcCCCCchHHHHHHHHHHHhC-CCChh
Confidence            443 3345566778888999999999999999999988776651   1 1223456677777777777766542 33557


Q ss_pred             hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 018582          234 TWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD  304 (353)
Q Consensus       234 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  304 (353)
                      .+..|...|.+++.|.+|.+.|+..++.+        |+..+|+.+..++.+.|++..|..+.++....-.
T Consensus       330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~--------~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~  392 (400)
T COG3071         330 LLSTLGRLALKNKLWGKASEALEAALKLR--------PSASDYAELADALDQLGEPEEAEQVRREALLLTR  392 (400)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHhcC--------CChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Confidence            88899999999999999999999998887        9999999999999999999999999998775433

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.66  E-value=1.4e-12  Score=114.35  Aligned_cols=316  Identities=13%  Similarity=0.102  Sum_probs=242.4

Q ss_pred             ChHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 018582            1 MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIE   80 (353)
Q Consensus         1 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~   80 (353)
                      ++++|.+++.++.+... .....|..|...|-+.|+.++++..+-..... -+-|...|..+.....+.|+++.|.-.|.
T Consensus       154 ~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~~~~i~qA~~cy~  231 (895)
T KOG2076|consen  154 DLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQLGNINQARYCYS  231 (895)
T ss_pred             CHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence            46889999999998774 67788999999999999999998877544332 24456788888888999999999999999


Q ss_pred             HHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHH----HHHHHHHHccCCHHHHHHHHHHHHHh
Q 018582           81 EMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAY----QFLITLYGQTGNLSEVYRIWRSLRLA  156 (353)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~  156 (353)
                      +.++.  .+++...+-.-...|-+.|+...|...|.++....++.|..-+    ..+++.+...++-+.|.+.++.....
T Consensus       232 rAI~~--~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~  309 (895)
T KOG2076|consen  232 RAIQA--NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK  309 (895)
T ss_pred             HHHhc--CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence            99997  6788887778889999999999999999999887664333322    33456677778778898888877653


Q ss_pred             -CCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcC---------------------------CCCcHHHHHHHHHHHH
Q 018582          157 -FPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGC---------------------------ATYDIRVTNVMIGAYA  208 (353)
Q Consensus       157 -~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~~li~~~~  208 (353)
                       +-..+...++.++..+.+...++.+......+....                           ..++..+. .+.-++.
T Consensus       310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~  388 (895)
T KOG2076|consen  310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICLV  388 (895)
T ss_pred             ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhhh
Confidence             223455677888888999999999888877766511                           22233331 2223334


Q ss_pred             hcCChHHHHHHHHHHHhcC--CCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhc
Q 018582          209 KEGRLENAEELKERARRRG--ADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQE  286 (353)
Q Consensus       209 ~~g~~~~a~~~~~~~~~~~--~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  286 (353)
                      .....+....+..-+.+..  +.-+...|.-+..+|...|.+..|+.+|..+.....      .-+...|..+.++|...
T Consensus       389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~------~~~~~vw~~~a~c~~~l  462 (895)
T KOG2076|consen  389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREG------YQNAFVWYKLARCYMEL  462 (895)
T ss_pred             cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcc------ccchhhhHHHHHHHHHH
Confidence            4444445555555555554  333456788889999999999999999999998752      24577899999999999


Q ss_pred             CChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChHHH
Q 018582          287 KDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVM  328 (353)
Q Consensus       287 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~  328 (353)
                      |..++|.+.++.++...| .+...-.+|...+-+.|+...++
T Consensus       463 ~e~e~A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~Ekal  503 (895)
T KOG2076|consen  463 GEYEEAIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKAL  503 (895)
T ss_pred             hhHHHHHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHH
Confidence            999999999999999998 88999999999999999965544

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=3.2e-12  Score=104.12  Aligned_cols=289  Identities=17%  Similarity=0.105  Sum_probs=206.9

Q ss_pred             HHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCC--CCCcchHHHHHHHHHhcCChhHHHHHHH
Q 018582            3 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSI--MPDSYTYNVWMRALAAVNDISGAERVIE   80 (353)
Q Consensus         3 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~   80 (353)
                      +++++=.+.....|.+.+...-+....+.-...++++|..+|+++.+...  --|.++|..++-.-....    .+..+.
T Consensus       244 ~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s----kLs~LA  319 (559)
T KOG1155|consen  244 EEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS----KLSYLA  319 (559)
T ss_pred             HHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH----HHHHHH
Confidence            34445555555566533333333334444456677777777777776520  024456665553322111    111111


Q ss_pred             H-HHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC
Q 018582           81 E-MKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN  159 (353)
Q Consensus        81 ~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  159 (353)
                      + ....  .+--+.|+..+.+.|+-.++.++|...|++..+.++. ...+|+.+.+-|....+...|.+-++...+..+ 
T Consensus       320 ~~v~~i--dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p-  395 (559)
T KOG1155|consen  320 QNVSNI--DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINP-  395 (559)
T ss_pred             HHHHHh--ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCc-
Confidence            1 1111  2333456667788888899999999999999988765 677999999999999999999999999988765 


Q ss_pred             CChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHH
Q 018582          160 TANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFS  239 (353)
Q Consensus       160 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li  239 (353)
                      .|-..|-.+.++|.-.+.+.-|+-.|++.....+ .|.+.|.+|.++|.+.++.++|++.|.+....|- .+...+..+.
T Consensus       396 ~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~La  473 (559)
T KOG1155|consen  396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLA  473 (559)
T ss_pred             hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHH
Confidence            4788999999999999999999999999998764 4999999999999999999999999999988763 2568899999


Q ss_pred             HHHHccCChHHHHHHHHHHHHcCCCCCCCCcc-cHHHHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 018582          240 DYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKA  302 (353)
Q Consensus       240 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  302 (353)
                      ..|-+.++..+|..+|.+-++.-. ..+...| ......-|..-+.+.+++++|..........
T Consensus       474 kLye~l~d~~eAa~~yek~v~~~~-~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~  536 (559)
T KOG1155|consen  474 KLYEELKDLNEAAQYYEKYVEVSE-LEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG  536 (559)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHH-hhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence            999999999999999988776320 0000113 2334444666778899999988766655543

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.63  E-value=3.9e-12  Score=103.62  Aligned_cols=307  Identities=14%  Similarity=0.119  Sum_probs=215.5

Q ss_pred             HHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCcHHHHHHHHHHHHhcCCH
Q 018582           30 LYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRV-AADWTTFSNLASIYVEAGLF  108 (353)
Q Consensus        30 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~  108 (353)
                      ++-...+.++++.-.......|++-+...-+....+.-...|+++|+.+|+++.+..+. -.|..+|..++-.-.....+
T Consensus       236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL  315 (559)
T KOG1155|consen  236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL  315 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence            33444455566666666666665444443344444455666777777777777765311 11344554444332221111


Q ss_pred             H-HHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHH
Q 018582          109 E-KAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKE  187 (353)
Q Consensus       109 ~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  187 (353)
                      . -|..+++ +  ...  -+.|+.++.+-|.-.++.++|...|++..+-++. ....|+.+.+-|....+...|.+-++.
T Consensus       316 s~LA~~v~~-i--dKy--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRr  389 (559)
T KOG1155|consen  316 SYLAQNVSN-I--DKY--RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRR  389 (559)
T ss_pred             HHHHHHHHH-h--ccC--CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence            1 1111111 1  111  2336777778888899999999999999887653 567899999999999999999999999


Q ss_pred             HHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCC
Q 018582          188 WESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGG  267 (353)
Q Consensus       188 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~  267 (353)
                      .++-++. |-..|-.|.++|.-.+...-|+-.|++..+.. +-|...|.+|.++|.+.++.++|++.|.+....|-    
T Consensus       390 Avdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d----  463 (559)
T KOG1155|consen  390 AVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD----  463 (559)
T ss_pred             HHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc----
Confidence            9998744 99999999999999999999999999998863 33789999999999999999999999999998862    


Q ss_pred             CCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHh----cCCC-C-ChhhhHHHHHHHHHcCCChHHHHHHHHhCCCccCH
Q 018582          268 KWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKK----AVDD-L-GVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSE  341 (353)
Q Consensus       268 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~-~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~  341 (353)
                         .+...+..|...|-+.++.++|...+++.++    .|.. | ...+..-|..-+.+.+++.++-.-.+......+..
T Consensus       464 ---te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~  540 (559)
T KOG1155|consen  464 ---TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETEC  540 (559)
T ss_pred             ---cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchH
Confidence               4568899999999999999999999988766    2331 2 22333446677788888777666555555446666


Q ss_pred             hHHHHHHHHh
Q 018582          342 ASKKLLEAIC  351 (353)
Q Consensus       342 ~~~~~l~~~c  351 (353)
                      .-...|++-|
T Consensus       541 eeak~LlRei  550 (559)
T KOG1155|consen  541 EEAKALLREI  550 (559)
T ss_pred             HHHHHHHHHH
Confidence            6666665544

>PRK12370 invasion protein regulator; Provisional

Probab=99.61  E-value=1.4e-12  Score=116.22  Aligned_cols=233  Identities=10%  Similarity=0.011  Sum_probs=166.6

Q ss_pred             CCchhHHHHHHHHHh-----cCCcchHHHHHHHHHHCCCCCCc-chHHHHHHHHHh---------cCChhHHHHHHHHHH
Q 018582           19 FSSMPFNSLMTLYAK-----TGHPEKIPAIIQEMKASSIMPDS-YTYNVWMRALAA---------VNDISGAERVIEEMK   83 (353)
Q Consensus        19 ~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~---------~~~~~~a~~~~~~~~   83 (353)
                      .+...|...+.+-..     .+.+++|.+.|++..+.  .|+. ..|..+..++..         .+++++|...+++..
T Consensus       254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al  331 (553)
T PRK12370        254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT  331 (553)
T ss_pred             CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence            566666666665321     35688999999988875  3543 455555544432         244788999999988


Q ss_pred             HcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChh
Q 018582           84 RDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANI  163 (353)
Q Consensus        84 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  163 (353)
                      +.  .+.+...+..+...+...|++++|...|++..+.++. +...+..+...+...|++++|+..+++..+..+.. ..
T Consensus       332 ~l--dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~-~~  407 (553)
T PRK12370        332 EL--DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR-AA  407 (553)
T ss_pred             hc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-hh
Confidence            86  4667778888888888999999999999998887654 56778888888999999999999999988776542 22


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-hhhHHHHHHHH
Q 018582          164 SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPN-AKTWEIFSDYY  242 (353)
Q Consensus       164 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~  242 (353)
                      .+...+..+...|++++|...+++......+.+...+..+..++...|+.++|...+.++...  .|+ ....+.+...|
T Consensus       408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~  485 (553)
T PRK12370        408 AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEY  485 (553)
T ss_pred             hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHH
Confidence            333344456668889999999988876543335556777888888899999999999887654  333 34445555666


Q ss_pred             HccCChHHHHHHHHHHHHc
Q 018582          243 LRNGDMKLAVDCLEKAIDT  261 (353)
Q Consensus       243 ~~~~~~~~a~~~~~~~~~~  261 (353)
                      ...|  +.|...++.+.+.
T Consensus       486 ~~~g--~~a~~~l~~ll~~  502 (553)
T PRK12370        486 CQNS--ERALPTIREFLES  502 (553)
T ss_pred             hccH--HHHHHHHHHHHHH
Confidence            7766  4777777776664

>PRK12370 invasion protein regulator; Provisional

Probab=99.60  E-value=7.2e-12  Score=111.65  Aligned_cols=265  Identities=12%  Similarity=0.046  Sum_probs=186.1

Q ss_pred             CCcchHHHHHHHHHh-----cCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHh---------cCCHHHHHHHHHHHH
Q 018582           54 PDSYTYNVWMRALAA-----VNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVE---------AGLFEKAERALKELE  119 (353)
Q Consensus        54 p~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~  119 (353)
                      .+...|...+++-..     .+++++|...|++..+.  .+.+...|..+..++..         .+++++|...+++..
T Consensus       254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al  331 (553)
T PRK12370        254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT  331 (553)
T ss_pred             CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence            344556666665322     23467899999999986  34456666666655542         345889999999998


Q ss_pred             HccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHH
Q 018582          120 NRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRV  199 (353)
Q Consensus       120 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  199 (353)
                      +..+. +..++..+...+...|++++|...|++..+..+ .+...+..+..++...|++++|...+++..+..+. +...
T Consensus       332 ~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~  408 (553)
T PRK12370        332 ELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA  408 (553)
T ss_pred             hcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence            87665 778888888899999999999999999988765 35567888889999999999999999999987654 3333


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc-HHHHHH
Q 018582          200 TNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRT  278 (353)
Q Consensus       200 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~  278 (353)
                      +..++..+...|++++|...+++......+-+...+..+...+...|++++|...+.++....        |+ ....+.
T Consensus       409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~--------~~~~~~~~~  480 (553)
T PRK12370        409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE--------ITGLIAVNL  480 (553)
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc--------chhHHHHHH
Confidence            444455566789999999999998765322244557778888889999999999999877654        54 344555


Q ss_pred             HHHHHHhcCChhhHHHHHHHHHhcCC-CCChhhhHHHHHHHHHcCCC-hHHHHHHHHhC
Q 018582          279 FMRHFEQEKDVDGAEGFLEILKKAVD-DLGVEVFEPLIRTYAAAGRT-SPVMLRRLKME  335 (353)
Q Consensus       279 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~-~~~~~~~m~~~  335 (353)
                      +...|...|  +.|...++.+.+..- .+....+  +...|.-.|+. ...+++.+.+.
T Consensus       481 l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~  535 (553)
T PRK12370        481 LYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMWNKFKNE  535 (553)
T ss_pred             HHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHHHHhhcc
Confidence            555667777  477777777665322 1222222  44445555663 23334555444

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.60  E-value=2.2e-12  Score=113.89  Aligned_cols=295  Identities=14%  Similarity=0.146  Sum_probs=217.3

Q ss_pred             HHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHC---CCCCCcc------hHHHHHHHHHhcCChhHHHHHHHHH
Q 018582           12 MKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKAS---SIMPDSY------TYNVWMRALAAVNDISGAERVIEEM   82 (353)
Q Consensus        12 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~------~~~~ll~~~~~~~~~~~a~~~~~~~   82 (353)
                      +...+-++.+...|.+...+...|++.+|...|......   ...++..      +-..+.++.-..++++.|.+.|..+
T Consensus       443 L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~I  522 (1018)
T KOG2002|consen  443 LESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSI  522 (1018)
T ss_pred             HHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence            334444466677888888888888888888888887654   1223321      2233455566677888888888888


Q ss_pred             HHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHh-CCCCC
Q 018582           83 KRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLA-FPNTA  161 (353)
Q Consensus        83 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~  161 (353)
                      .+.  .+-=+..|-.++......+...+|...+.......- .++.+++.+...+.+...|..|.+-|....+. ...+|
T Consensus       523 lke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D  599 (1018)
T KOG2002|consen  523 LKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTD  599 (1018)
T ss_pred             HHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCc
Confidence            885  333344555555444556778888888888866433 36677888888888888898888877776554 23356


Q ss_pred             hhHHHHHHHHHHh------------cCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 018582          162 NISYLNMIQVLVN------------LKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGAD  229 (353)
Q Consensus       162 ~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~  229 (353)
                      .++...|.+.|..            .+..++|.++|.++++..+. |...-|.+.-.++..|++.+|..+|.++.+... 
T Consensus       600 ~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-  677 (1018)
T KOG2002|consen  600 AYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-  677 (1018)
T ss_pred             hhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-
Confidence            6666666665543            24567899999999988755 888889999999999999999999999998743 


Q ss_pred             CChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChh
Q 018582          230 PNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVE  309 (353)
Q Consensus       230 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  309 (353)
                      -...+|..+...|...|++..|+++|+...+.-.+     ..+..+...|.+++.+.|.+.+|.+.+.......|.....
T Consensus       678 ~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~-----~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v  752 (1018)
T KOG2002|consen  678 DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYK-----KNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSV  752 (1018)
T ss_pred             hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchH
Confidence            25568889999999999999999999998777421     2568889999999999999999999998888888744455


Q ss_pred             hhHHHHH
Q 018582          310 VFEPLIR  316 (353)
Q Consensus       310 ~~~~l~~  316 (353)
                      .||..+.
T Consensus       753 ~FN~a~v  759 (1018)
T KOG2002|consen  753 KFNLALV  759 (1018)
T ss_pred             HhHHHHH
Confidence            5555443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.59  E-value=4e-12  Score=101.02  Aligned_cols=202  Identities=15%  Similarity=0.066  Sum_probs=160.0

Q ss_pred             CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHH
Q 018582           55 DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLI  134 (353)
Q Consensus        55 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  134 (353)
                      ....+..+...+...|++++|...+++..+.  .+.+...+..+...+...|++++|.+.+++..+..+. +...+..+.
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~  106 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEH--DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYG  106 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHH
Confidence            3456777788888899999999999988875  4556777788888899999999999999988776544 566778888


Q ss_pred             HHHHccCCHHHHHHHHHHHHHhCCC-CChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCh
Q 018582          135 TLYGQTGNLSEVYRIWRSLRLAFPN-TANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRL  213 (353)
Q Consensus       135 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  213 (353)
                      ..+...|++++|.+.+++....... .....+..+..++...|++++|...+.+.....+. +...+..+...+...|++
T Consensus       107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~  185 (234)
T TIGR02521       107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQY  185 (234)
T ss_pred             HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCH
Confidence            8888999999999999988764322 23346667788888999999999999998876533 567788888899999999


Q ss_pred             HHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 018582          214 ENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDT  261 (353)
Q Consensus       214 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  261 (353)
                      ++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+...
T Consensus       186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  232 (234)
T TIGR02521       186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL  232 (234)
T ss_pred             HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            9999999988876 3445666777778888889999999888877654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.58  E-value=9.3e-12  Score=98.92  Aligned_cols=204  Identities=21%  Similarity=0.159  Sum_probs=159.3

Q ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHH
Q 018582           89 AADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNM  168 (353)
Q Consensus        89 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  168 (353)
                      ......+..+...+...|++++|...+++..+..+. +...+..+...+...|++++|.+.+++..+..+ .+...+..+
T Consensus        28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~  105 (234)
T TIGR02521        28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNY  105 (234)
T ss_pred             CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHH
Confidence            344567778888999999999999999988776543 567788888899999999999999998887654 355677778


Q ss_pred             HHHHHhcCChhHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCC
Q 018582          169 IQVLVNLKDLPGAEKCFKEWESGCA-TYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGD  247 (353)
Q Consensus       169 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~  247 (353)
                      ...+...|++++|.+.+++...... ......+..+...+...|++++|...+.+..+... .+...+..+...+...|+
T Consensus       106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~  184 (234)
T TIGR02521       106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQ  184 (234)
T ss_pred             HHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCC
Confidence            8888899999999999999876432 22345667778888889999999999988887632 245677788888888999


Q ss_pred             hHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 018582          248 MKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKA  302 (353)
Q Consensus       248 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  302 (353)
                      +++|...+++..+.. +      .+...+..+...+...|+.+.|..+.+.+...
T Consensus       185 ~~~A~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  232 (234)
T TIGR02521       185 YKDARAYLERYQQTY-N------QTAESLWLGIRIARALGDVAAAQRYGAQLQKL  232 (234)
T ss_pred             HHHHHHHHHHHHHhC-C------CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            999999998888763 1      45666667778888888999988888776553

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=3.2e-11  Score=100.75  Aligned_cols=293  Identities=10%  Similarity=-0.006  Sum_probs=232.8

Q ss_pred             CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHH
Q 018582           53 MPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQF  132 (353)
Q Consensus        53 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  132 (353)
                      .-+.........-|...+++.+..++.+.+.+.  .+++...+..-|.++...|+..+-..+=.++.+.-|. ...+|-+
T Consensus       241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~--dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~a  317 (611)
T KOG1173|consen  241 AENLDLLAEKADRLYYGCRFKECLKITEELLEK--DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFA  317 (611)
T ss_pred             hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh--CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhh
Confidence            334555566666788889999999999999997  6888888888888999999998888888888876554 6789999


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC
Q 018582          133 LITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGR  212 (353)
Q Consensus       133 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  212 (353)
                      +.--|...|+.++|.+.|.+....... -...|......|+-.|..|.|...+....+.-+. ....+--+.--|.+.++
T Consensus       318 Vg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n  395 (611)
T KOG1173|consen  318 VGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNN  395 (611)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhcc
Confidence            999999999999999999987655432 2457888999999999999999999887653211 11112234456888999


Q ss_pred             hHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhH
Q 018582          213 LENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGA  292 (353)
Q Consensus       213 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  292 (353)
                      ++.|.+.|.+..... +-|+...+.+.-.....+.+.+|..+|+..+..-.........-..+++.|..+|.+.+.+++|
T Consensus       396 ~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA  474 (611)
T KOG1173|consen  396 LKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA  474 (611)
T ss_pred             HHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence            999999999988752 3466777777777778899999999999987431110000112356789999999999999999


Q ss_pred             HHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChHHHHHHHHhCCCccCHhHHHHHHHHhc
Q 018582          293 EGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLLEAICV  352 (353)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~~~~l~~~c~  352 (353)
                      ...+++.+...+ .+..++.++.-.|...|+...++-..-+...+.|+..+..-+++.|.
T Consensus       475 I~~~q~aL~l~~-k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai  533 (611)
T KOG1173|consen  475 IDYYQKALLLSP-KDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI  533 (611)
T ss_pred             HHHHHHHHHcCC-CchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence            999999999999 99999999999999999988888777888999999988887777664

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.54  E-value=1.3e-11  Score=100.66  Aligned_cols=279  Identities=18%  Similarity=0.167  Sum_probs=209.8

Q ss_pred             HHHhcCCcchHHHHHHHHHHCCCCCCcchHH--HHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCC
Q 018582           30 LYAKTGHPEKIPAIIQEMKASSIMPDSYTYN--VWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGL  107 (353)
Q Consensus        30 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  107 (353)
                      .+.++|+++.|++++.-..+..-+.-...-+  +.++.+....++..|.+.-+.....  ..-+......-.+.....|+
T Consensus       428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~--dryn~~a~~nkgn~~f~ngd  505 (840)
T KOG2003|consen  428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI--DRYNAAALTNKGNIAFANGD  505 (840)
T ss_pred             HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc--cccCHHHhhcCCceeeecCc
Confidence            4778899999999988877653222222222  2233333345677888777766665  34444444444455556799


Q ss_pred             HHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHH
Q 018582          108 FEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKE  187 (353)
Q Consensus       108 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  187 (353)
                      +++|.+.+++.....-.-....|| +.-.+...|+.++|++.|-++...- ..+..+...+.+.|....+...|.+++.+
T Consensus       506 ~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q  583 (840)
T KOG2003|consen  506 LDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQ  583 (840)
T ss_pred             HHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence            999999999987643221222222 3335677899999999998875542 24566777888999999999999999988


Q ss_pred             HHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCC
Q 018582          188 WESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGG  267 (353)
Q Consensus       188 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~  267 (353)
                      .... ++.|+.+.+.|...|-+.|+-.+|++.+-+--.. ++-+..+..-|...|....-+++++.+|++..-..     
T Consensus       584 ~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaaliq-----  656 (840)
T KOG2003|consen  584 ANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ-----  656 (840)
T ss_pred             hccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC-----
Confidence            7765 3558899999999999999999999987665443 45578888888889999999999999999987654     


Q ss_pred             CCcccHHHHHHHHHH-HHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCC
Q 018582          268 KWVPSSETIRTFMRH-FEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR  323 (353)
Q Consensus       268 ~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  323 (353)
                         |+..-|..++.. +.+.|+++.|..+++.+...-| .|..+...|++.+...|-
T Consensus       657 ---p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfp-edldclkflvri~~dlgl  709 (840)
T KOG2003|consen  657 ---PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFP-EDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             ---ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCc-cchHHHHHHHHHhccccc
Confidence               999999988875 5678999999999999988887 899999999999988887

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.54  E-value=2.1e-12  Score=100.68  Aligned_cols=232  Identities=13%  Similarity=0.093  Sum_probs=148.3

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHc
Q 018582           60 NVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQ  139 (353)
Q Consensus        60 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  139 (353)
                      +.+.++|.+.|-+.+|.+.++...+.   .|-..||-.|-..|.+..++..|+.++.+-.+.-+. |+....-+.+.+..
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~-~VT~l~g~ARi~ea  302 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPF-DVTYLLGQARIHEA  302 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCc-hhhhhhhhHHHHHH
Confidence            44666777777777777777766663   466666667777777777777777777766654222 44444455566666


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHH
Q 018582          140 TGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEEL  219 (353)
Q Consensus       140 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  219 (353)
                      .++.++|.++|+...+..+ .+......+...|.-.++++.|...|+++.+.|.. +...|+.+.-+|.-.++++-++.-
T Consensus       303 m~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s  380 (478)
T KOG1129|consen  303 MEQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS  380 (478)
T ss_pred             HHhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence            6777777777776665543 34555555566666667777777777777777654 666777776666667777777777


Q ss_pred             HHHHHhcCCCCC--hhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHH
Q 018582          220 KERARRRGADPN--AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLE  297 (353)
Q Consensus       220 ~~~~~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  297 (353)
                      |.+....--.|+  ...|-.+.......||+..|.+.|+-.+.++       ..+...++.|...-.+.|++++|..+++
T Consensus       381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-------~~h~ealnNLavL~~r~G~i~~Arsll~  453 (478)
T KOG1129|consen  381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-------AQHGEALNNLAVLAARSGDILGARSLLN  453 (478)
T ss_pred             HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-------cchHHHHHhHHHHHhhcCchHHHHHHHH
Confidence            666654322233  2345555555666677777777777766665       1235667777666677777777777777


Q ss_pred             HHHhcCC
Q 018582          298 ILKKAVD  304 (353)
Q Consensus       298 ~~~~~~~  304 (353)
                      ......|
T Consensus       454 ~A~s~~P  460 (478)
T KOG1129|consen  454 AAKSVMP  460 (478)
T ss_pred             HhhhhCc
Confidence            6666554

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.54  E-value=1.3e-10  Score=102.35  Aligned_cols=307  Identities=13%  Similarity=0.081  Sum_probs=235.2

Q ss_pred             HHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCC
Q 018582           28 MTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGL  107 (353)
Q Consensus        28 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  107 (353)
                      .+...-.|+.++|.+++.+..+.. +-+...|..|...|-+.|+.+++...+-.+-..  .+-|...|..+.....+.|.
T Consensus       146 AN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL--~p~d~e~W~~ladls~~~~~  222 (895)
T KOG2076|consen  146 ANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL--NPKDYELWKRLADLSEQLGN  222 (895)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHhccc
Confidence            334444599999999999999864 567889999999999999999999988777765  57788999999999999999


Q ss_pred             HHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChh----HHHHHHHHHHhcCChhHHHH
Q 018582          108 FEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANI----SYLNMIQVLVNLKDLPGAEK  183 (353)
Q Consensus       108 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~  183 (353)
                      +++|.-.|.+.++..+. +...+-.-+..|.+.|+...|.+.|.++....+..|..    .-..+++.+...++.+.|.+
T Consensus       223 i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~  301 (895)
T KOG2076|consen  223 INQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK  301 (895)
T ss_pred             HHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            99999999999987665 55555566788999999999999999998875532322    23345677778888889999


Q ss_pred             HHHHHHhc-CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhH--------------------------H
Q 018582          184 CFKEWESG-CATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTW--------------------------E  236 (353)
Q Consensus       184 ~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~--------------------------~  236 (353)
                      .+...... +-..+...++.++..|.+...++.+......+......+|..-|                          -
T Consensus       302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~  381 (895)
T KOG2076|consen  302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI  381 (895)
T ss_pred             HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence            88887752 22335667889999999999999999988887762222222111                          1


Q ss_pred             HHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHH
Q 018582          237 IFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIR  316 (353)
Q Consensus       237 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  316 (353)
                      .+.-++.+....+....+..........    ..-+...|.-+..++...|++++|..++..+.......+...|-.+..
T Consensus       382 rl~icL~~L~~~e~~e~ll~~l~~~n~~----~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~  457 (895)
T KOG2076|consen  382 RLMICLVHLKERELLEALLHFLVEDNVW----VSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLAR  457 (895)
T ss_pred             hHhhhhhcccccchHHHHHHHHHHhcCC----hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHH
Confidence            2333445556666666666666666643    123577899999999999999999999999998777678889999999


Q ss_pred             HHHHcCCChHHHHHHHHhCCCccCHh
Q 018582          317 TYAAAGRTSPVMLRRLKMEKVEVSEA  342 (353)
Q Consensus       317 ~~~~~g~~~~~~~~~m~~~~~~p~~~  342 (353)
                      +|...|....|+.-.-+...+.|+..
T Consensus       458 c~~~l~e~e~A~e~y~kvl~~~p~~~  483 (895)
T KOG2076|consen  458 CYMELGEYEEAIEFYEKVLILAPDNL  483 (895)
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCCCch
Confidence            99999997777754445555566543

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.54  E-value=6.6e-10  Score=94.77  Aligned_cols=319  Identities=16%  Similarity=0.176  Sum_probs=224.8

Q ss_pred             HHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 018582            3 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEM   82 (353)
Q Consensus         3 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~   82 (353)
                      +-|+.||....+--. .+...|......=-..|..+....+|++.... ++-....|-......-..|++..|..++..+
T Consensus       533 ~carAVya~alqvfp-~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~a  610 (913)
T KOG0495|consen  533 ECARAVYAHALQVFP-CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQA  610 (913)
T ss_pred             HHHHHHHHHHHhhcc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence            344555555544321 34455666665555567777777777777664 3444445555566666778888888888888


Q ss_pred             HHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCh
Q 018582           83 KRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTAN  162 (353)
Q Consensus        83 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  162 (353)
                      .+.  .+.+...|-..+.......+++.|..+|.+....  .|+...|..-+..---.++.++|++++++..+..+ .-.
T Consensus       611 f~~--~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp-~f~  685 (913)
T KOG0495|consen  611 FEA--NPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFP-DFH  685 (913)
T ss_pred             HHh--CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCC-chH
Confidence            776  4556677777788888888888888888877653  45666666666666667778888888877766533 233


Q ss_pred             hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 018582          163 ISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYY  242 (353)
Q Consensus       163 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~  242 (353)
                      ..|..+.+.+-+.++.+.|...|..-.+.. +..+..|-.|...--+.|.+-.|..++++..-++++ +...|-..|+.-
T Consensus       686 Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c-P~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~E  763 (913)
T KOG0495|consen  686 KLWLMLGQIEEQMENIEMAREAYLQGTKKC-PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRME  763 (913)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHhccccC-CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHH
Confidence            466777777778888888887777766553 335566777777777778888888888887776544 677888888888


Q ss_pred             HccCChHHHHHHHHHHHHcCCCCC-----------------------CCCcccHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 018582          243 LRNGDMKLAVDCLEKAIDTGRGDG-----------------------GKWVPSSETIRTFMRHFEQEKDVDGAEGFLEIL  299 (353)
Q Consensus       243 ~~~~~~~~a~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  299 (353)
                      .+.|..+.|..+..+.++.-....                       .++.-|+.....+...|....+++.|.+.|.+.
T Consensus       764 lR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ra  843 (913)
T KOG0495|consen  764 LRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERA  843 (913)
T ss_pred             HHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888877777666531111                       014557777788888899999999999999999


Q ss_pred             HhcCCCCChhhhHHHHHHHHHcCCC--hHHHHHH
Q 018582          300 KKAVDDLGVEVFEPLIRTYAAAGRT--SPVMLRR  331 (353)
Q Consensus       300 ~~~~~~~~~~~~~~l~~~~~~~g~~--~~~~~~~  331 (353)
                      .+.++ .+-.+|..+..-+.++|..  ...++..
T Consensus       844 vk~d~-d~GD~wa~fykfel~hG~eed~kev~~~  876 (913)
T KOG0495|consen  844 VKKDP-DNGDAWAWFYKFELRHGTEEDQKEVLKK  876 (913)
T ss_pred             HccCC-ccchHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            99999 8899999999999999973  3344443

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.53  E-value=5.5e-11  Score=97.75  Aligned_cols=317  Identities=14%  Similarity=0.093  Sum_probs=217.3

Q ss_pred             hHHHHHHHHHHHhcCCCCC-chhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCc-chHHHHHHHHHhcCChhHHHH--
Q 018582            2 TEKAEALLEKMKELNLGFS-SMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDS-YTYNVWMRALAAVNDISGAER--   77 (353)
Q Consensus         2 ~~~A~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~--   77 (353)
                      +++|++.+....+..  || +..|.....+|...|+|+++.+--.+..+  +.|+- ..+..-.+++-+.|++++|+.  
T Consensus       131 Y~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~E~lg~~~eal~D~  206 (606)
T KOG0547|consen  131 YDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASAHEQLGKFDEALFDV  206 (606)
T ss_pred             HHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHHHhhccHHHHHHhh
Confidence            688999999988865  67 77888899999999999999888877776  34543 244444555555565555432  


Q ss_pred             --------------------HHHH---------HHH-cCCCCCcHHHHHHHHHHH-------------------------
Q 018582           78 --------------------VIEE---------MKR-DGRVAADWTTFSNLASIY-------------------------  102 (353)
Q Consensus        78 --------------------~~~~---------~~~-~~~~~~~~~~~~~l~~~~-------------------------  102 (353)
                                          ++..         +.+ +..+-|+.....+....+                         
T Consensus       207 tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~  286 (606)
T KOG0547|consen  207 TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEA  286 (606)
T ss_pred             hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHH
Confidence                                1111         110 001222222222221111                         


Q ss_pred             --------------------------------------------------HhcCCHHHHHHHHHHHHHccCCCCHHHHHH
Q 018582          103 --------------------------------------------------VEAGLFEKAERALKELENRNAHRDLSAYQF  132 (353)
Q Consensus       103 --------------------------------------------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  132 (353)
                                                                        .-.|+.-.|..-|+..+...+.+ ...|-.
T Consensus       287 l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~  365 (606)
T KOG0547|consen  287 LEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAF-NSLYIK  365 (606)
T ss_pred             HHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCccc-chHHHH
Confidence                                                              11233344444444444433322 223666


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC
Q 018582          133 LITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGR  212 (353)
Q Consensus       133 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  212 (353)
                      +...|....+.++....|+...+.++ -++.+|..-.+...-.+++++|..=|++.....+. +...|-.+..+..+.++
T Consensus       366 ~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k  443 (606)
T KOG0547|consen  366 RAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQHK  443 (606)
T ss_pred             HHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHH
Confidence            66778888888888888888777665 36667777777777788899999999988887644 77788888888888999


Q ss_pred             hHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCC-CcccHHHHHHHHHHHHhcCChhh
Q 018582          213 LENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGK-WVPSSETIRTFMRHFEQEKDVDG  291 (353)
Q Consensus       213 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~  291 (353)
                      ++++...|++..++ ++.-+..|+.....+...+++++|.+.|+..+..-...... +.+.+.+...++..-.+ +++..
T Consensus       444 ~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~  521 (606)
T KOG0547|consen  444 IAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK-EDINQ  521 (606)
T ss_pred             HHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh-hhHHH
Confidence            99999999999887 45567899999999999999999999999998874110000 11223333444443344 89999


Q ss_pred             HHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChHHH
Q 018582          292 AEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVM  328 (353)
Q Consensus       292 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~  328 (353)
                      |.+++++..+.+| .....|..|...-.+.|+..+++
T Consensus       522 a~~Ll~KA~e~Dp-kce~A~~tlaq~~lQ~~~i~eAi  557 (606)
T KOG0547|consen  522 AENLLRKAIELDP-KCEQAYETLAQFELQRGKIDEAI  557 (606)
T ss_pred             HHHHHHHHHccCc-hHHHHHHHHHHHHHHHhhHHHHH
Confidence            9999999999999 88899999999999999955443

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.53  E-value=1.6e-12  Score=113.73  Aligned_cols=274  Identities=14%  Similarity=0.072  Sum_probs=173.2

Q ss_pred             HHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 018582            7 ALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDG   86 (353)
Q Consensus         7 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~   86 (353)
                      .++-.+...|+.|+..||..+|..|+..|+.+.|- +|.-|.-...+.+...|+.++.++...++.+.+.          
T Consensus        11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------   79 (1088)
T KOG4318|consen   11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------   79 (1088)
T ss_pred             hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence            34556667777777777777777777777777766 7777766666667777777777776666655443          


Q ss_pred             CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-hCCCCChhHH
Q 018582           87 RVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRL-AFPNTANISY  165 (353)
Q Consensus        87 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~  165 (353)
                        .|...+|..|..+|...||+.. ++..++           ....+...+...|.-.....++..+.- .+.-||..  
T Consensus        80 --ep~aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~--  143 (1088)
T KOG4318|consen   80 --EPLADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE--  143 (1088)
T ss_pred             --CCchhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH--
Confidence              4666677777777777777665 222222           111223334444544444444443221 12233332  


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc-CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHc
Q 018582          166 LNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKE-GRLENAEELKERARRRGADPNAKTWEIFSDYYLR  244 (353)
Q Consensus       166 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~  244 (353)
                       ..+......|-++.+.+++..+...... .+...  .++-.... ..+++.....+...+   .|++.+|..++..-..
T Consensus       144 -n~illlv~eglwaqllkll~~~Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~ala  216 (1088)
T KOG4318|consen  144 -NAILLLVLEGLWAQLLKLLAKVPVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALA  216 (1088)
T ss_pred             -HHHHHHHHHHHHHHHHHHHhhCCccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHh
Confidence             3344445566677777776654432111 11111  13222222 223333333333332   5889999999999999


Q ss_pred             cCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCC
Q 018582          245 NGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR  323 (353)
Q Consensus       245 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  323 (353)
                      .|+.+.|..++.+|.+.|.+      .+..-|..|+-+   .++...+..+++-|.+.|+.|+..|+...+..+..+|.
T Consensus       217 ag~~d~Ak~ll~emke~gfp------ir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~  286 (1088)
T KOG4318|consen  217 AGDVDGAKNLLYEMKEKGFP------IRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ  286 (1088)
T ss_pred             cCchhhHHHHHHHHHHcCCC------cccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence            99999999999999999954      677777777766   78888888999999999999999999988888888655

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.52  E-value=4.8e-10  Score=99.54  Aligned_cols=305  Identities=13%  Similarity=0.098  Sum_probs=218.6

Q ss_pred             HHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCC--CCcchHHHHHHHHHhcCChhHHHHHHH
Q 018582            3 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIM--PDSYTYNVWMRALAAVNDISGAERVIE   80 (353)
Q Consensus         3 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~   80 (353)
                      ..++.++...-..+. .++++.+.|.+.|.-.|+++.++++...+......  .-...|-.+.+++-..|++++|...|.
T Consensus       253 ~~~~~ll~~ay~~n~-~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~  331 (1018)
T KOG2002|consen  253 KKGVQLLQRAYKENN-ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYM  331 (1018)
T ss_pred             HHHHHHHHHHHhhcC-CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence            345555555544432 57788888999999999999999998888765311  123457788899999999999999998


Q ss_pred             HHHHcCCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccC----CHHHHHHHHHHHH
Q 018582           81 EMKRDGRVAAD--WTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTG----NLSEVYRIWRSLR  154 (353)
Q Consensus        81 ~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~  154 (353)
                      +..+..   ++  ...+..|.+.|.+.|+++.+...|+.+....+. +..+...|...|...+    ..+.|..++.+..
T Consensus       332 ~s~k~~---~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~  407 (1018)
T KOG2002|consen  332 ESLKAD---NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN-NYETMKILGCLYAHSAKKQEKRDKASNVLGKVL  407 (1018)
T ss_pred             HHHccC---CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHH
Confidence            888743   33  334456888999999999999999998776543 5667777777777765    4466666666665


Q ss_pred             HhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHH----hcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhc---C
Q 018582          155 LAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWE----SGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRR---G  227 (353)
Q Consensus       155 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~  227 (353)
                      ...+ .|...|..+...+....-+.. +..|....    ..+..+.+...|.+...+...|++++|...|......   .
T Consensus       408 ~~~~-~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~  485 (1018)
T KOG2002|consen  408 EQTP-VDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEV  485 (1018)
T ss_pred             hccc-ccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhh
Confidence            5543 466777777776655544433 66665533    4444567788899999999999999999999887654   1


Q ss_pred             CCCCh------hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc-HHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 018582          228 ADPNA------KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILK  300 (353)
Q Consensus       228 ~~p~~------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~  300 (353)
                      ..+|.      .+--.+...+-..++++.|.+.|..+.+..        |. ...|-.++......++..+|...++.+.
T Consensus       486 ~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--------p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l  557 (1018)
T KOG2002|consen  486 ANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--------PGYIDAYLRLGCMARDKNNLYEASLLLKDAL  557 (1018)
T ss_pred             cCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--------chhHHHHHHhhHHHHhccCcHHHHHHHHHHH
Confidence            22333      122334556667789999999999999886        65 4556666655556678889999999998


Q ss_pred             hcCCCCChhhhHHHHHHHHHcCC
Q 018582          301 KAVDDLGVEVFEPLIRTYAAAGR  323 (353)
Q Consensus       301 ~~~~~~~~~~~~~l~~~~~~~g~  323 (353)
                      ..+- .++..+..+...+.+...
T Consensus       558 ~~d~-~np~arsl~G~~~l~k~~  579 (1018)
T KOG2002|consen  558 NIDS-SNPNARSLLGNLHLKKSE  579 (1018)
T ss_pred             hccc-CCcHHHHHHHHHHHhhhh
Confidence            8777 888888888888877666

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.50  E-value=1.3e-11  Score=108.05  Aligned_cols=265  Identities=17%  Similarity=0.194  Sum_probs=192.9

Q ss_pred             HHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 018582           42 AIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENR  121 (353)
Q Consensus        42 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  121 (353)
                      .++-.+...|+.|+..||..+|.-|+..|+.+.|- +|.-|.... .+.+..+|+.++.+..+.++.+.+.         
T Consensus        11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks-Lpv~e~vf~~lv~sh~~And~Enpk---------   79 (1088)
T KOG4318|consen   11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS-LPVREGVFRGLVASHKEANDAENPK---------   79 (1088)
T ss_pred             hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccc-ccccchhHHHHHhcccccccccCCC---------
Confidence            56778888999999999999999999999999999 999998877 8899999999999999999988877         


Q ss_pred             cCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHH-hcCCCCcHHHH
Q 018582          122 NAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWE-SGCATYDIRVT  200 (353)
Q Consensus       122 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~  200 (353)
                        .|...+|+.|..+|...||...    |+...+        -...+...+...|.-.....++..+. ..+.-||.   
T Consensus        80 --ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---  142 (1088)
T KOG4318|consen   80 --EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---  142 (1088)
T ss_pred             --CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---
Confidence              5778899999999999999876    332222        12234445556666666556665543 22233443   


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHH
Q 018582          201 NVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNG-DMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTF  279 (353)
Q Consensus       201 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l  279 (353)
                      ...+......|-++.+.+++..+...... .  ++..+++-+.... .+++-..+-+.... +        |+..++..+
T Consensus       143 ~n~illlv~eglwaqllkll~~~Pvsa~~-~--p~~vfLrqnv~~ntpvekLl~~cksl~e-~--------~~s~~l~a~  210 (1088)
T KOG4318|consen  143 ENAILLLVLEGLWAQLLKLLAKVPVSAWN-A--PFQVFLRQNVVDNTPVEKLLNMCKSLVE-A--------PTSETLHAV  210 (1088)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCccccc-c--hHHHHHHHhccCCchHHHHHHHHHHhhc-C--------CChHHHHHH
Confidence            23444556667788888888766532111 1  1112344444433 34444444444443 4        999999999


Q ss_pred             HHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChHHHHHHHHhCCCccCHhHHHHH
Q 018582          280 MRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLL  347 (353)
Q Consensus       280 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~~~~l  347 (353)
                      +.+-...|+.+.|..++.+|++.|.+....-|-.|+-+ ...-...+.+++-|+..|+.|+..|+.--
T Consensus       211 l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g-~~~~q~~e~vlrgmqe~gv~p~seT~ady  277 (1088)
T KOG4318|consen  211 LKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG-INAAQVFEFVLRGMQEKGVQPGSETQADY  277 (1088)
T ss_pred             HHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc-CccchHHHHHHHHHHHhcCCCCcchhHHH
Confidence            99999999999999999999999997777777777766 32233667788999999999999996543

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.49  E-value=7.1e-12  Score=97.84  Aligned_cols=236  Identities=14%  Similarity=0.153  Sum_probs=198.1

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHH-HHHH
Q 018582           91 DWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISY-LNMI  169 (353)
Q Consensus        91 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~  169 (353)
                      |+..-+.+..+|.+.|.+.+|.+.|+.-.+..  |-+.||..|-..|.+..++..|+.++.+-.+.-  |..+|| ..+.
T Consensus       222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~f--P~~VT~l~g~A  297 (478)
T KOG1129|consen  222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF--PFDVTYLLGQA  297 (478)
T ss_pred             hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC--CchhhhhhhhH
Confidence            44444789999999999999999999987764  455588899999999999999999999887753  444554 5577


Q ss_pred             HHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChH
Q 018582          170 QVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMK  249 (353)
Q Consensus       170 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~  249 (353)
                      ..+-..++.++|.++|+...+.. +.++.....+...|.-.++++.|+..|+++++.|+. +...|+.+.-+|...++++
T Consensus       298 Ri~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D  375 (478)
T KOG1129|consen  298 RIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQID  375 (478)
T ss_pred             HHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchh
Confidence            88888999999999999999876 447888888888888899999999999999999976 7899999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCCCCccc--HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCC--Ch
Q 018582          250 LAVDCLEKAIDTGRGDGGKWVPS--SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR--TS  325 (353)
Q Consensus       250 ~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~  325 (353)
                      -++..|.+....-..      |+  ..+|..+.......||+..|.+-|+-....++ .+...+|.|...-.+.|+  .+
T Consensus       376 ~~L~sf~RAlstat~------~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~A  448 (478)
T KOG1129|consen  376 LVLPSFQRALSTATQ------PGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDILGA  448 (478)
T ss_pred             hhHHHHHHHHhhccC------cchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCchHHH
Confidence            999999999887532      44  57888898889999999999999999999888 889999999999999999  44


Q ss_pred             HHHHHHHHhCCCccCH
Q 018582          326 PVMLRRLKMEKVEVSE  341 (353)
Q Consensus       326 ~~~~~~m~~~~~~p~~  341 (353)
                      .+++..  ...+.|+.
T Consensus       449 rsll~~--A~s~~P~m  462 (478)
T KOG1129|consen  449 RSLLNA--AKSVMPDM  462 (478)
T ss_pred             HHHHHH--hhhhCccc
Confidence            455543  33445553

>PF13041 PPR_2: PPR repeat family

Probab=99.48  E-value=6.2e-14  Score=81.25  Aligned_cols=50  Identities=36%  Similarity=0.622  Sum_probs=38.5

Q ss_pred             CCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHh
Q 018582           19 FSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAA   68 (353)
Q Consensus        19 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~   68 (353)
                      ||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            67777777777777777777777777777777777777777777777653

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.47  E-value=8.7e-11  Score=100.51  Aligned_cols=244  Identities=17%  Similarity=0.134  Sum_probs=182.0

Q ss_pred             chHHHHHHHHHhcCChhHHHHHHHHHHHc-----CCCCCcHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHc-----cCC-
Q 018582           57 YTYNVWMRALAAVNDISGAERVIEEMKRD-----GRVAADWTTF-SNLASIYVEAGLFEKAERALKELENR-----NAH-  124 (353)
Q Consensus        57 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-  124 (353)
                      .+...+...|...|+++.|..+++...+.     |...|...+. +.+...|...+++++|..+|+++...     |.. 
T Consensus       200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h  279 (508)
T KOG1840|consen  200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH  279 (508)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence            46667889999999999999999988774     2124444433 45888999999999999999998542     111 


Q ss_pred             C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHh-----CC-CCCh-hHHHHHHHHHHhcCChhHHHHHHHHHHhc---CC
Q 018582          125 R-DLSAYQFLITLYGQTGNLSEVYRIWRSLRLA-----FP-NTAN-ISYLNMIQVLVNLKDLPGAEKCFKEWESG---CA  193 (353)
Q Consensus       125 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~  193 (353)
                      | -..+++.|..+|.+.|++++|...++...+.     +. .|.. ..++.+...++..+++++|..+++...+.   -+
T Consensus       280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~  359 (508)
T KOG1840|consen  280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP  359 (508)
T ss_pred             HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence            1 2456778888999999999999988875432     11 1222 24677788899999999999999875531   11


Q ss_pred             CC----cHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CC--CCC-hhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582          194 TY----DIRVTNVMIGAYAKEGRLENAEELKERARRR----GA--DPN-AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG  262 (353)
Q Consensus       194 ~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~--~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  262 (353)
                      .+    -..+++.|...|...|++++|.++++.....    +-  .+. ...++.+...|.+.+.+..|.++|.+.....
T Consensus       360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~  439 (508)
T KOG1840|consen  360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM  439 (508)
T ss_pred             cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence            22    2468899999999999999999999987643    11  222 3567888899999999999999998866654


Q ss_pred             CCCCCCCccc-HHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 018582          263 RGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKK  301 (353)
Q Consensus       263 ~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  301 (353)
                       +..++..|+ ..+|..|...|.+.|+++.|.++.+.+..
T Consensus       440 -~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  440 -KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN  478 (508)
T ss_pred             -HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence             222223354 57899999999999999999999887764

>PF13041 PPR_2: PPR repeat family

Probab=99.47  E-value=2.2e-13  Score=78.95  Aligned_cols=50  Identities=28%  Similarity=0.523  Sum_probs=40.0

Q ss_pred             CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHc
Q 018582          195 YDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLR  244 (353)
Q Consensus       195 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~  244 (353)
                      ||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            67778888888888888888888888888888888888888888887764

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.46  E-value=3.3e-10  Score=92.65  Aligned_cols=240  Identities=16%  Similarity=0.146  Sum_probs=171.5

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHH------------------------------------HHHHccCCH
Q 018582          100 SIYVEAGLFEKAERALKELENRNAHRDLSAYQFLI------------------------------------TLYGQTGNL  143 (353)
Q Consensus       100 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~------------------------------------~~~~~~~~~  143 (353)
                      .-|.+.|+++.|.++++-+.+..-..-..+-+.|-                                    +.....|++
T Consensus       427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~  506 (840)
T KOG2003|consen  427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDL  506 (840)
T ss_pred             HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcH
Confidence            35889999999999988775543221111111110                                    011246788


Q ss_pred             HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018582          144 SEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERA  223 (353)
Q Consensus       144 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  223 (353)
                      ++|.+.|++............| .+.-.+-..|++++|+..|-++...- ..+..+...+...|-...+..+|++++.+.
T Consensus       507 dka~~~ykeal~ndasc~ealf-niglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~  584 (840)
T KOG2003|consen  507 DKAAEFYKEALNNDASCTEALF-NIGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQA  584 (840)
T ss_pred             HHHHHHHHHHHcCchHHHHHHH-HhcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence            8898888887665433222233 33445677899999999998876542 237778888889999999999999999887


Q ss_pred             HhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 018582          224 RRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAV  303 (353)
Q Consensus       224 ~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  303 (353)
                      ... ++.|+...+.|...|-+.|+-.+|.+++-+--..       ++.+..+..-|..-|....-++.+..+|++..-  
T Consensus       585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-------fp~nie~iewl~ayyidtqf~ekai~y~ekaal--  654 (840)
T KOG2003|consen  585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-------FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--  654 (840)
T ss_pred             ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-------cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--
Confidence            765 5557888899999999999999999887665544       235678888888888888899999999998654  


Q ss_pred             CCCChhhhHHHHHHHHH-cCCChH--HHHHHHHhCCCccCHhHHHHHHHHhc
Q 018582          304 DDLGVEVFEPLIRTYAA-AGRTSP--VMLRRLKMEKVEVSEASKKLLEAICV  352 (353)
Q Consensus       304 ~~~~~~~~~~l~~~~~~-~g~~~~--~~~~~m~~~~~~p~~~~~~~l~~~c~  352 (353)
                      +.|+..-|..++..|.+ .|++..  .+++.. .+.+.-|.....+|.++|.
T Consensus       655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~-hrkfpedldclkflvri~~  705 (840)
T KOG2003|consen  655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDI-HRKFPEDLDCLKFLVRIAG  705 (840)
T ss_pred             cCccHHHHHHHHHHHHHhcccHHHHHHHHHHH-HHhCccchHHHHHHHHHhc
Confidence            33899999988877755 566444  444443 3446677888999999985

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.46  E-value=3.5e-10  Score=94.75  Aligned_cols=281  Identities=11%  Similarity=0.015  Sum_probs=225.0

Q ss_pred             CchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 018582           20 SSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLA   99 (353)
Q Consensus        20 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~   99 (353)
                      ++...-.-.+-+...+++.+..++.+...+. .+++...+..-|.++...|+..+-..+=.++++.  .|....+|-++.
T Consensus       243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~--yP~~a~sW~aVg  319 (611)
T KOG1173|consen  243 NLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL--YPSKALSWFAVG  319 (611)
T ss_pred             cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCCcchhhHH
Confidence            4444555566677889999999999999886 4778888888888999999999999988899987  677888999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChh
Q 018582          100 SIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLP  179 (353)
Q Consensus       100 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  179 (353)
                      -.|.-.|..++|.+.|.+....... =...|-.....|.-.|..+.|+..+...-+--+. ...-+.-+.--|.+.++.+
T Consensus       320 ~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~k  397 (611)
T KOG1173|consen  320 CYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLK  397 (611)
T ss_pred             HHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHH
Confidence            9999999999999999998664433 3458889999999999999999998876554221 1112233555688899999


Q ss_pred             HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--CCC----CChhhHHHHHHHHHccCChHHHHH
Q 018582          180 GAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRR--GAD----PNAKTWEIFSDYYLRNGDMKLAVD  253 (353)
Q Consensus       180 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~----p~~~~~~~li~~~~~~~~~~~a~~  253 (353)
                      .|.++|.+.....+. |+.+.+.+.-.....+.+.+|...|+..+..  .+.    -...+++.|..+|.+.+.+++|+.
T Consensus       398 LAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~  476 (611)
T KOG1173|consen  398 LAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID  476 (611)
T ss_pred             HHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence            999999999887644 8888888888888889999999999887621  111    134568889999999999999999


Q ss_pred             HHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHH
Q 018582          254 CLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPL  314 (353)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  314 (353)
                      .++..+...       .-+..++.++.-.|...|+++.|...|.+.....| .|..+-..|
T Consensus       477 ~~q~aL~l~-------~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p-~n~~~~~lL  529 (611)
T KOG1173|consen  477 YYQKALLLS-------PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKP-DNIFISELL  529 (611)
T ss_pred             HHHHHHHcC-------CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC-ccHHHHHHH
Confidence            999999875       25788999999999999999999999999887775 444433333

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.46  E-value=2.5e-09  Score=91.33  Aligned_cols=305  Identities=15%  Similarity=0.090  Sum_probs=216.6

Q ss_pred             hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHH----HCCCCCCcc--------------------
Q 018582            2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMK----ASSIMPDSY--------------------   57 (353)
Q Consensus         2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~----~~~~~p~~~--------------------   57 (353)
                      ++.|..+++..++ .++-+...|.+-...=-.+|+.+.+.++.++-.    ..|+..+..                    
T Consensus       422 YenAkkvLNkaRe-~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQA  500 (913)
T KOG0495|consen  422 YENAKKVLNKARE-IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQA  500 (913)
T ss_pred             HHHHHHHHHHHHh-hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHH
Confidence            3566777777665 354566677666666666667666666655432    234433332                    


Q ss_pred             -----------------hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 018582           58 -----------------TYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELEN  120 (353)
Q Consensus        58 -----------------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  120 (353)
                                       ||..-...|.+.+.++-|..+|....+.  ++.+...|..+...--..|..+.-..+|++...
T Consensus       501 Ii~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~Esl~Allqkav~  578 (913)
T KOG0495|consen  501 IIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVE  578 (913)
T ss_pred             HHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence                             3333444455555566666777776665  555666666666666667777777778877776


Q ss_pred             ccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHH
Q 018582          121 RNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVT  200 (353)
Q Consensus       121 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  200 (353)
                      .-+. ....|-.....+-..|+...|..++....+..+. +...|...+.....+..++.|..+|.+....  .|+..+|
T Consensus       579 ~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~  654 (913)
T KOG0495|consen  579 QCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVW  654 (913)
T ss_pred             hCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhh
Confidence            5443 5556666777777888888888888888777653 6678888888888888888998888887764  4566777


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHH
Q 018582          201 NVMIGAYAKEGRLENAEELKERARRRGADPN-AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTF  279 (353)
Q Consensus       201 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l  279 (353)
                      .--+....-.++.++|.+++++.++.  -|+ ...|..+.+.+-+.++.+.|.+.|..-.+.-       +-....|..|
T Consensus       655 mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c-------P~~ipLWllL  725 (913)
T KOG0495|consen  655 MKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC-------PNSIPLWLLL  725 (913)
T ss_pred             HHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC-------CCCchHHHHH
Confidence            77777777788889999998887775  334 4567777778888888888888776655442       2245677777


Q ss_pred             HHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCC
Q 018582          280 MRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR  323 (353)
Q Consensus       280 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  323 (353)
                      ...=-+.|.+-.|..++++.+-.+| .+...|...|+.-.+.|.
T Consensus       726 akleEk~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn  768 (913)
T KOG0495|consen  726 AKLEEKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGN  768 (913)
T ss_pred             HHHHHHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCC
Confidence            7777788889999999999888888 888899999999888888

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.44  E-value=3.9e-09  Score=86.93  Aligned_cols=116  Identities=15%  Similarity=0.129  Sum_probs=85.3

Q ss_pred             hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 018582            2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEE   81 (353)
Q Consensus         2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~   81 (353)
                      +..|+++|+.-.+..  |+..+|++.|..=.+.+.++.|.++|++.+-  +.|+..+|--..+-=.+.|++..+..+|+.
T Consensus       157 i~gaRqiferW~~w~--P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~Vyer  232 (677)
T KOG1915|consen  157 IAGARQIFERWMEWE--PDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYER  232 (677)
T ss_pred             cHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            456888888877654  8999999999999999999999999998876  458998888888888888999999999888


Q ss_pred             HHHc-CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 018582           82 MKRD-GRVAADWTTFSNLASIYVEAGLFEKAERALKELENR  121 (353)
Q Consensus        82 ~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  121 (353)
                      .++. |....+...+.+....-.++..++.|.-+|+-..+.
T Consensus       233 Aie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~  273 (677)
T KOG1915|consen  233 AIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH  273 (677)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7763 212222334444444444566666666666665543

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.43  E-value=7.2e-10  Score=90.81  Aligned_cols=233  Identities=13%  Similarity=0.072  Sum_probs=152.4

Q ss_pred             CChhHHHHHHHHHHHcCCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHH
Q 018582           70 NDISGAERVIEEMKRDGRVAAD--WTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVY  147 (353)
Q Consensus        70 ~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  147 (353)
                      +..+.++.-+.++.......|+  ...|..+...|.+.|+.++|...|++..+..+. +..+|+.+...+...|++++|.
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~  118 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAY  118 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence            4556677777777764322222  355777788888889999999888888876554 6788888888889999999999


Q ss_pred             HHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 018582          148 RIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRG  227 (353)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  227 (353)
                      +.|++..+..+. +..++..+..++...|++++|.+.++...+..+. +. ........+...++.++|...|.+.....
T Consensus       119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~  195 (296)
T PRK11189        119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DP-YRALWLYLAESKLDPKQAKENLKQRYEKL  195 (296)
T ss_pred             HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence            988888776543 4567777888888889999999999888876543 22 11122223345678889988887655432


Q ss_pred             CCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcc-cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC
Q 018582          228 ADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDL  306 (353)
Q Consensus       228 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  306 (353)
                       .|+...+ .  ......|+...+ +.+..+.+.... .....| ....|..+...+.+.|++++|...|++..+.++ +
T Consensus       196 -~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~-~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~-~  268 (296)
T PRK11189        196 -DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATD-NTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV-Y  268 (296)
T ss_pred             -CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCC-cHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-c
Confidence             2332222 2  222334555443 344444432100 000112 245788888889999999999999999988887 5


Q ss_pred             ChhhhHH
Q 018582          307 GVEVFEP  313 (353)
Q Consensus       307 ~~~~~~~  313 (353)
                      +..-+..
T Consensus       269 ~~~e~~~  275 (296)
T PRK11189        269 NFVEHRY  275 (296)
T ss_pred             hHHHHHH
Confidence            5554444

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.42  E-value=3.3e-10  Score=97.02  Aligned_cols=241  Identities=20%  Similarity=0.241  Sum_probs=179.5

Q ss_pred             chhHHHHHHHHHhcCCcchHHHHHHHHHHC-----C-CCCCcch-HHHHHHHHHhcCChhHHHHHHHHHHHc-----CCC
Q 018582           21 SMPFNSLMTLYAKTGHPEKIPAIIQEMKAS-----S-IMPDSYT-YNVWMRALAAVNDISGAERVIEEMKRD-----GRV   88 (353)
Q Consensus        21 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~-~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~   88 (353)
                      ..+...|...|...|+++.|..++.+..+.     | ..|...+ .+.+...|...+++.+|..+|+++...     |..
T Consensus       199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~  278 (508)
T KOG1840|consen  199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED  278 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence            346666889999999999999999998764     2 1233332 344667889999999999999998762     222


Q ss_pred             CC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---c--cC-CCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHh---C
Q 018582           89 AA-DWTTFSNLASIYVEAGLFEKAERALKELEN---R--NA-HRD-LSAYQFLITLYGQTGNLSEVYRIWRSLRLA---F  157 (353)
Q Consensus        89 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~--~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~  157 (353)
                      .| -..+++.|..+|.+.|++++|...++...+   .  +. .|. ...++.+...++..+++++|..+++...+.   -
T Consensus       279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~  358 (508)
T KOG1840|consen  279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA  358 (508)
T ss_pred             CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence            23 345778889999999999999988887633   1  11 122 234677788899999999999999975442   2


Q ss_pred             CCCCh----hHHHHHHHHHHhcCChhHHHHHHHHHHhcC-------CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHh-
Q 018582          158 PNTAN----ISYLNMIQVLVNLKDLPGAEKCFKEWESGC-------ATYDIRVTNVMIGAYAKEGRLENAEELKERARR-  225 (353)
Q Consensus       158 ~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-  225 (353)
                      +.++.    .+++.+...|...|++++|.+++++..+..       ..-....++.|...|.+.+++++|.++|.+-.. 
T Consensus       359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i  438 (508)
T KOG1840|consen  359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI  438 (508)
T ss_pred             ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            33333    478999999999999999999999976421       122345678888999999999999999887442 


Q ss_pred             ---cCCC-CC-hhhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 018582          226 ---RGAD-PN-AKTWEIFSDYYLRNGDMKLAVDCLEKAIDT  261 (353)
Q Consensus       226 ---~~~~-p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  261 (353)
                         .|+. |+ ..+|..|...|.+.|+++.|.++.+.....
T Consensus       439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~  479 (508)
T KOG1840|consen  439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA  479 (508)
T ss_pred             HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence               2321 22 467899999999999999999998887644

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.42  E-value=1.3e-09  Score=94.46  Aligned_cols=284  Identities=12%  Similarity=0.111  Sum_probs=199.3

Q ss_pred             HHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhc--
Q 018582           28 MTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEA--  105 (353)
Q Consensus        28 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--  105 (353)
                      ...+...|++++|++.++.-... +......+......+.+.|+.++|..+|..++++  .|.|..-|..+..+..-.  
T Consensus        11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~   87 (517)
T PF12569_consen   11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQ   87 (517)
T ss_pred             HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcc
Confidence            34567889999999999775543 3334456677888999999999999999999998  466666667777776333  


Q ss_pred             ---CCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHH-HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHH
Q 018582          106 ---GLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLS-EVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGA  181 (353)
Q Consensus       106 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  181 (353)
                         .+.+....+++++...-+.  ..+...+.-.+.....+. .+..++..+...|+ |  .+|+.+-..|....+.+-.
T Consensus        88 ~~~~~~~~~~~~y~~l~~~yp~--s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kgv-P--slF~~lk~Ly~d~~K~~~i  162 (517)
T PF12569_consen   88 LSDEDVEKLLELYDELAEKYPR--SDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGV-P--SLFSNLKPLYKDPEKAAII  162 (517)
T ss_pred             cccccHHHHHHHHHHHHHhCcc--ccchhHhhcccCCHHHHHHHHHHHHHHHHhcCC-c--hHHHHHHHHHcChhHHHHH
Confidence               2567788889888765433  223322222222222333 34455566667776 3  4667777777766666666


Q ss_pred             HHHHHHHHhc----C----------CCCcH--HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHc
Q 018582          182 EKCFKEWESG----C----------ATYDI--RVTNVMIGAYAKEGRLENAEELKERARRRGADPN-AKTWEIFSDYYLR  244 (353)
Q Consensus       182 ~~~~~~~~~~----~----------~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~  244 (353)
                      .+++......    +          -+|..  .++.-+.+.|...|++++|++.+++..++  .|+ +..|..-...+-+
T Consensus       163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh  240 (517)
T PF12569_consen  163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKH  240 (517)
T ss_pred             HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHH
Confidence            6666665421    1          13344  34466678888999999999999999987  344 6788888899999


Q ss_pred             cCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChh------hh--HHHHH
Q 018582          245 NGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVE------VF--EPLIR  316 (353)
Q Consensus       245 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~--~~l~~  316 (353)
                      .|++++|.+.++.....+.       -|..+-+-.+..+.+.|+.++|.+++..+...+..|...      .|  .....
T Consensus       241 ~G~~~~Aa~~~~~Ar~LD~-------~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~  313 (517)
T PF12569_consen  241 AGDLKEAAEAMDEARELDL-------ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAE  313 (517)
T ss_pred             CCCHHHHHHHHHHHHhCCh-------hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHH
Confidence            9999999999999999872       456666667778889999999999999887765323222      22  45677


Q ss_pred             HHHHcCCChHHH
Q 018582          317 TYAAAGRTSPVM  328 (353)
Q Consensus       317 ~~~~~g~~~~~~  328 (353)
                      +|.+.|++..++
T Consensus       314 a~~r~~~~~~AL  325 (517)
T PF12569_consen  314 AYLRQGDYGLAL  325 (517)
T ss_pred             HHHHHhhHHHHH
Confidence            889999866655

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.42  E-value=1.1e-09  Score=95.03  Aligned_cols=289  Identities=15%  Similarity=0.112  Sum_probs=202.1

Q ss_pred             hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHH-hc-----CChhHH
Q 018582            2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALA-AV-----NDISGA   75 (353)
Q Consensus         2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~-----~~~~~a   75 (353)
                      +++|++.++.-.. .+.............+.+.|+.++|..+|..+.+.+  |+...|...+..+. ..     .+.+..
T Consensus        20 ~~~AL~~L~~~~~-~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~~~~~~~~   96 (517)
T PF12569_consen   20 YEEALEHLEKNEK-QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLSDEDVEKL   96 (517)
T ss_pred             HHHHHHHHHhhhh-hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccccccHHHH
Confidence            5788888877544 342334556777889999999999999999999976  77776665555444 22     356778


Q ss_pred             HHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 018582           76 ERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFE-KAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLR  154 (353)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  154 (353)
                      ..+|+++...  . |.......+.-.+.....+. .+...+..+...|++ +  +|+.+-..|....+..-..+++....
T Consensus        97 ~~~y~~l~~~--y-p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP-s--lF~~lk~Ly~d~~K~~~i~~l~~~~~  170 (517)
T PF12569_consen   97 LELYDELAEK--Y-PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP-S--LFSNLKPLYKDPEKAAIIESLVEEYV  170 (517)
T ss_pred             HHHHHHHHHh--C-ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc-h--HHHHHHHHHcChhHHHHHHHHHHHHH
Confidence            8899988775  3 54444434433333333343 345566666777764 3  67777777776666666666666654


Q ss_pred             Hh----C----------CCCChh--HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHH
Q 018582          155 LA----F----------PNTANI--SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEE  218 (353)
Q Consensus       155 ~~----~----------~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  218 (353)
                      ..    +          -.|...  ++..+...|...|++++|.+++++.+...+. .+..|..-.+.+-..|++.+|.+
T Consensus       171 ~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~  249 (517)
T PF12569_consen  171 NSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAE  249 (517)
T ss_pred             HhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHH
Confidence            32    1          123332  4456678889999999999999999988644 57889899999999999999999


Q ss_pred             HHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHH--HHHHHHHHhcCChhhHHHHH
Q 018582          219 LKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETI--RTFMRHFEQEKDVDGAEGFL  296 (353)
Q Consensus       219 ~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~  296 (353)
                      .++..+..... |-..-+..+..+.++|+.++|.+++....+.+..|.....--.-.|  .....+|.+.|++..|++.|
T Consensus       250 ~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~  328 (517)
T PF12569_consen  250 AMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRF  328 (517)
T ss_pred             HHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            99999987533 5556666778889999999999999999887743211110001122  44456899999999999877


Q ss_pred             HHHHh
Q 018582          297 EILKK  301 (353)
Q Consensus       297 ~~~~~  301 (353)
                      ..+.+
T Consensus       329 ~~v~k  333 (517)
T PF12569_consen  329 HAVLK  333 (517)
T ss_pred             HHHHH
Confidence            76654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.39  E-value=1.9e-09  Score=80.52  Aligned_cols=200  Identities=13%  Similarity=0.002  Sum_probs=161.4

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 018582           58 TYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLY  137 (353)
Q Consensus        58 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  137 (353)
                      +...+.-.|.+.|+...|..-+++.++.  .+.+..++..+...|-+.|+.+.|.+.|++.....+. +..+.|.....+
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FL  113 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFL  113 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHH
Confidence            3445666788899999999999999887  5667788888999999999999999999998877655 677888888888


Q ss_pred             HccCCHHHHHHHHHHHHHhC-CCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHH
Q 018582          138 GQTGNLSEVYRIWRSLRLAF-PNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENA  216 (353)
Q Consensus       138 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a  216 (353)
                      |..|++++|...|++....- ..-...+|..+.-+..+.|+.+.|...|++..+..+. .....-.+.....+.|++-.|
T Consensus       114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~A  192 (250)
T COG3063         114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPA  192 (250)
T ss_pred             HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHH
Confidence            99999999999998876652 1223457888888888999999999999998887654 555677788888889999999


Q ss_pred             HHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582          217 EELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG  262 (353)
Q Consensus       217 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  262 (353)
                      ...++.....+. ++..+.-..|+.-...|+.+.+-++=..+.+.-
T Consensus       193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~f  237 (250)
T COG3063         193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLF  237 (250)
T ss_pred             HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            999998887765 788888888888888899888887777776654

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.36  E-value=2.3e-09  Score=80.05  Aligned_cols=183  Identities=19%  Similarity=0.132  Sum_probs=100.6

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Q 018582          130 YQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAK  209 (353)
Q Consensus       130 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  209 (353)
                      ...|.-.|...|+...|..-+++..+..+ .+..++..+...|.+.|+.+.|.+-|++..+..+. +..+.|.....+|.
T Consensus        38 rlqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~  115 (250)
T COG3063          38 RLQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA  115 (250)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence            33344455556666666666655555543 23445555555566666666666666665555433 45555555666666


Q ss_pred             cCChHHHHHHHHHHHhcC-CCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc-HHHHHHHHHHHHhcC
Q 018582          210 EGRLENAEELKERARRRG-ADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEK  287 (353)
Q Consensus       210 ~g~~~~a~~~~~~~~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~  287 (353)
                      .|++++|...|++....- ..--..+|..+.-+..+.|+++.|.+.|++.++..        |+ ......+.....+.|
T Consensus       116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--------p~~~~~~l~~a~~~~~~~  187 (250)
T COG3063         116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD--------PQFPPALLELARLHYKAG  187 (250)
T ss_pred             CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--------cCCChHHHHHHHHHHhcc
Confidence            666666666666555421 11112455555555555666666666666666554        32 344555555555666


Q ss_pred             ChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCC
Q 018582          288 DVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR  323 (353)
Q Consensus       288 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  323 (353)
                      ++-.|..+++.....+. ++....-..|+.--+.|+
T Consensus       188 ~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd  222 (250)
T COG3063         188 DYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGD  222 (250)
T ss_pred             cchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhcc
Confidence            66666666665555555 555555555555555555

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.34  E-value=3.5e-09  Score=86.83  Aligned_cols=95  Identities=11%  Similarity=-0.090  Sum_probs=48.1

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 018582           59 YNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYG  138 (353)
Q Consensus        59 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  138 (353)
                      |..+...+...|+.++|...|++..+.  .+.+...|+.+...+...|++++|...|++..+..+. +..+|..+...+.
T Consensus        67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~  143 (296)
T PRK11189         67 HYERGVLYDSLGLRALARNDFSQALAL--RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALY  143 (296)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence            444444455555555555555555553  2334455555555555555555555555555443332 3344444555555


Q ss_pred             ccCCHHHHHHHHHHHHHh
Q 018582          139 QTGNLSEVYRIWRSLRLA  156 (353)
Q Consensus       139 ~~~~~~~a~~~~~~~~~~  156 (353)
                      ..|++++|.+.|+...+.
T Consensus       144 ~~g~~~eA~~~~~~al~~  161 (296)
T PRK11189        144 YGGRYELAQDDLLAFYQD  161 (296)
T ss_pred             HCCCHHHHHHHHHHHHHh
Confidence            555555555555555443

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.32  E-value=6.5e-09  Score=84.14  Aligned_cols=310  Identities=12%  Similarity=0.059  Sum_probs=164.3

Q ss_pred             hcCCCCCchhHHHHHHHHHh--cCCcchHHHHHHHHHHC-CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 018582           14 ELNLGFSSMPFNSLMTLYAK--TGHPEKIPAIIQEMKAS-SIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAA   90 (353)
Q Consensus        14 ~~~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~   90 (353)
                      ...++|...+...-+.++++  .++...|..++--+... -++-|.+....+..++...|+.++|...|++....  .+-
T Consensus       187 ~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy  264 (564)
T KOG1174|consen  187 AATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPD  264 (564)
T ss_pred             heecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--Chh
Confidence            33454444444444544443  44555555555444333 25566777888888888888888888888888774  233


Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 018582           91 DWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQ  170 (353)
Q Consensus        91 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  170 (353)
                      +........-.+.+.|+.++...+...+....- -+...|-.-.......+++..|+.+-++..+... .+...|-.-..
T Consensus       265 ~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~  342 (564)
T KOG1174|consen  265 NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGR  342 (564)
T ss_pred             hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccH
Confidence            333333344445567777777776666644211 1223333333444456667777766666555432 23344444455


Q ss_pred             HHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHH-HHHH-ccCCh
Q 018582          171 VLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFS-DYYL-RNGDM  248 (353)
Q Consensus       171 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li-~~~~-~~~~~  248 (353)
                      .+...++.++|.-.|+......+ .+...|..|+..|...|++.+|..+-+..... +.-+..+...+. ..|. ...--
T Consensus       343 lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~r  420 (564)
T KOG1174|consen  343 LLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMR  420 (564)
T ss_pred             HHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhH
Confidence            66667777777777776665542 36667777777777777777766655544332 122333333331 1121 11223


Q ss_pred             HHHHHHHHHHHHcCCCCCCCCccc-HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChHH
Q 018582          249 KLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPV  327 (353)
Q Consensus       249 ~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~  327 (353)
                      ++|.+++++.++..        |+ ....+.+...+...|..+++..+++.....-  +|....+.|.+.+...+...++
T Consensus       421 EKAKkf~ek~L~~~--------P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~--~D~~LH~~Lgd~~~A~Ne~Q~a  490 (564)
T KOG1174|consen  421 EKAKKFAEKSLKIN--------PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF--PDVNLHNHLGDIMRAQNEPQKA  490 (564)
T ss_pred             HHHHHHHHhhhccC--------CccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc--cccHHHHHHHHHHHHhhhHHHH
Confidence            44555555544443        43 3444455555555555555555555544322  4455555555555555444444


Q ss_pred             HHHHHHhCCCcc
Q 018582          328 MLRRLKMEKVEV  339 (353)
Q Consensus       328 ~~~~m~~~~~~p  339 (353)
                      +-..-....+.|
T Consensus       491 m~~y~~ALr~dP  502 (564)
T KOG1174|consen  491 MEYYYKALRQDP  502 (564)
T ss_pred             HHHHHHHHhcCc
Confidence            433333333333

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.32  E-value=2.8e-08  Score=80.55  Aligned_cols=279  Identities=11%  Similarity=0.061  Sum_probs=212.0

Q ss_pred             CCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcc-hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHH
Q 018582           17 LGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSY-TYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTF   95 (353)
Q Consensus        17 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   95 (353)
                      .+.|+.....+...+...|+..+|...|++....  .|+.. ......-.+.+.|+.+....+...+...  ..-+...|
T Consensus       228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~--~~~ta~~w  303 (564)
T KOG1174|consen  228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAK--VKYTASHW  303 (564)
T ss_pred             CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhh--hhcchhhh
Confidence            4456777889999999999999999999988764  34432 3333344456788888888888887765  33444455


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 018582           96 SNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNL  175 (353)
Q Consensus        96 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  175 (353)
                      ..-........+++.|+.+-++.++.... ++..|-.-...+...|++++|.-.|+....-.+ -+...|..++.+|...
T Consensus       304 fV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~  381 (564)
T KOG1174|consen  304 FVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQ  381 (564)
T ss_pred             hhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhh
Confidence            55566667788999999999998876544 666777777888999999999999998766543 4778999999999999


Q ss_pred             CChhHHHHHHHHHHhcCCCCcHHHHHHHH-HHHHh-cCChHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHccCChHHHH
Q 018582          176 KDLPGAEKCFKEWESGCATYDIRVTNVMI-GAYAK-EGRLENAEELKERARRRGADPN-AKTWEIFSDYYLRNGDMKLAV  252 (353)
Q Consensus       176 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~~-~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~  252 (353)
                      |++.+|...-+...+.- +.+..+.+.+. ..+.- -..-++|.++++.-...  .|+ ....+.+...|...|..+.++
T Consensus       382 ~~~kEA~~~An~~~~~~-~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i  458 (564)
T KOG1174|consen  382 KRFKEANALANWTIRLF-QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDII  458 (564)
T ss_pred             chHHHHHHHHHHHHHHh-hcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHH
Confidence            99999988777755432 33555555442 22222 22457899999887765  454 345677778899999999999


Q ss_pred             HHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHH
Q 018582          253 DCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEP  313 (353)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  313 (353)
                      .++++.+...        ||....+.|.+.+...+.+++|...|......+| .+..+...
T Consensus       459 ~LLe~~L~~~--------~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP-~~~~sl~G  510 (564)
T KOG1174|consen  459 KLLEKHLIIF--------PDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP-KSKRTLRG  510 (564)
T ss_pred             HHHHHHHhhc--------cccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc-cchHHHHH
Confidence            9999999876        9999999999999999999999999999999888 56555443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.29  E-value=1e-07  Score=81.02  Aligned_cols=300  Identities=12%  Similarity=0.001  Sum_probs=184.8

Q ss_pred             chhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcch---HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHH
Q 018582           21 SMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYT---YNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSN   97 (353)
Q Consensus        21 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   97 (353)
                      ...|..+...+...|+.+.+...+....... +++...   .......+...|++++|..++++..+.  .+.+...+..
T Consensus         6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~   82 (355)
T cd05804           6 ALGHAAAALLLLLGGERPAAAAKAAAAAQAL-AARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKL   82 (355)
T ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH
Confidence            4567777788888899999888777766542 223222   222334567889999999999999886  4555545442


Q ss_pred             HHHHHH----hcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 018582           98 LASIYV----EAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLV  173 (353)
Q Consensus        98 l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  173 (353)
                       ...+.    ..+..+.+.+.+.... ...+........+...+...|++++|.+.+++..+..+ .+...+..+..++.
T Consensus        83 -~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~  159 (355)
T cd05804          83 -HLGAFGLGDFSGMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVAHVLE  159 (355)
T ss_pred             -hHHHHHhcccccCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHH
Confidence             22222    2455555555555421 11122344555666788999999999999999988764 35667888899999


Q ss_pred             hcCChhHHHHHHHHHHhcCCC-CcH--HHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCChhhH-H--HHHHHHHccC
Q 018582          174 NLKDLPGAEKCFKEWESGCAT-YDI--RVTNVMIGAYAKEGRLENAEELKERARRRGA-DPNAKTW-E--IFSDYYLRNG  246 (353)
Q Consensus       174 ~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~-~--~li~~~~~~~  246 (353)
                      ..|++++|...+++....... ++.  ..|..+...+...|++++|..++++...... .+..... +  .++.-+...|
T Consensus       160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g  239 (355)
T cd05804         160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAG  239 (355)
T ss_pred             HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcC
Confidence            999999999999998875432 232  3455788899999999999999999864422 1112111 1  2233334444


Q ss_pred             ChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCC------C--ChhhhHHHHHHH
Q 018582          247 DMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDD------L--GVEVFEPLIRTY  318 (353)
Q Consensus       247 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~--~~~~~~~l~~~~  318 (353)
                      ....+.+. +.+.....+. ...............++...|+.+.|...++.+......      .  ..........++
T Consensus       240 ~~~~~~~w-~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~  317 (355)
T cd05804         240 HVDVGDRW-EDLADYAAWH-FPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYA  317 (355)
T ss_pred             CCChHHHH-HHHHHHHHhh-cCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHH
Confidence            43333322 2222111000 000011222235677788999999999999988763321      1  122333344455


Q ss_pred             HHcCCChHHH
Q 018582          319 AAAGRTSPVM  328 (353)
Q Consensus       319 ~~~g~~~~~~  328 (353)
                      ...|+++.++
T Consensus       318 ~~~g~~~~A~  327 (355)
T cd05804         318 FAEGNYATAL  327 (355)
T ss_pred             HHcCCHHHHH
Confidence            6777755543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.26  E-value=3.8e-09  Score=87.21  Aligned_cols=226  Identities=13%  Similarity=0.107  Sum_probs=181.8

Q ss_pred             HHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCH
Q 018582           29 TLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLF  108 (353)
Q Consensus        29 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  108 (353)
                      ..+.-.|+.-.|.+-|+........ +...|--+...|....+.++....|.+....  .+.|..+|..-.+.+.-.+++
T Consensus       334 tF~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l--dp~n~dvYyHRgQm~flL~q~  410 (606)
T KOG0547|consen  334 TFHFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDL--DPENPDVYYHRGQMRFLLQQY  410 (606)
T ss_pred             hhhhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhc--CCCCCchhHhHHHHHHHHHHH
Confidence            3455578999999999999886422 2233777888899999999999999999997  567778888888888888999


Q ss_pred             HHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 018582          109 EKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEW  188 (353)
Q Consensus       109 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  188 (353)
                      ++|..=|++.....++ +...|-.+.-+..+.++++++...|++.+..-+ ..+..|+.....+...++++.|.+.|+..
T Consensus       411 e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP-~~~Evy~~fAeiLtDqqqFd~A~k~YD~a  488 (606)
T KOG0547|consen  411 EEAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFP-NCPEVYNLFAEILTDQQQFDKAVKQYDKA  488 (606)
T ss_pred             HHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence            9999999999887655 677788888888899999999999999988854 46678999999999999999999999998


Q ss_pred             HhcCCC-------CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 018582          189 ESGCAT-------YDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDT  261 (353)
Q Consensus       189 ~~~~~~-------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  261 (353)
                      ....+.       +.+.+.-+++..- -.+++..|..++++..+..++ ....|..|...-.+.|+.++|+++|++....
T Consensus       489 i~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~l  566 (606)
T KOG0547|consen  489 IELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQL  566 (606)
T ss_pred             HhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            764322       1222222333322 348999999999999987544 4578999999999999999999999997765

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.24  E-value=1.1e-07  Score=80.73  Aligned_cols=270  Identities=12%  Similarity=0.031  Sum_probs=169.2

Q ss_pred             HHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHH----hcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHH
Q 018582           28 MTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALA----AVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYV  103 (353)
Q Consensus        28 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  103 (353)
                      ...+...|++++|.+.+++..+.. +.+...+.. ...+.    ..+....+.+.+......  .+........+...+.
T Consensus        50 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~a~~~~  125 (355)
T cd05804          50 ALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPE--NPDYWYLLGMLAFGLE  125 (355)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcC--CCCcHHHHHHHHHHHH
Confidence            345677899999999999988753 333334442 22222    245555566655542121  3334455567778899


Q ss_pred             hcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC-CCh--hHHHHHHHHHHhcCChhH
Q 018582          104 EAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN-TAN--ISYLNMIQVLVNLKDLPG  180 (353)
Q Consensus       104 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~  180 (353)
                      ..|++++|...+++..+..+. +...+..+...+...|++++|...+++.....+. |+.  ..|..+...+...|++++
T Consensus       126 ~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~  204 (355)
T cd05804         126 EAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEA  204 (355)
T ss_pred             HcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHH
Confidence            999999999999999887654 6778888999999999999999999998765432 222  245578888999999999


Q ss_pred             HHHHHHHHHhcCC-CCcHHHH-H--HHHHHHHhcCChHHHHHH--HHHHHhcCCCCChhhH--HHHHHHHHccCChHHHH
Q 018582          181 AEKCFKEWESGCA-TYDIRVT-N--VMIGAYAKEGRLENAEEL--KERARRRGADPNAKTW--EIFSDYYLRNGDMKLAV  252 (353)
Q Consensus       181 a~~~~~~~~~~~~-~~~~~~~-~--~li~~~~~~g~~~~a~~~--~~~~~~~~~~p~~~~~--~~li~~~~~~~~~~~a~  252 (353)
                      |..++++.....+ .+..... +  .++..+...|....+.++  +..............+  .....++...|+.+.|.
T Consensus       205 A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~  284 (355)
T cd05804         205 ALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALD  284 (355)
T ss_pred             HHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHH
Confidence            9999999864432 1222111 1  223333444543333333  2211111111111222  35667778899999999


Q ss_pred             HHHHHHHHcCCCCC-CCCc-ccHHHHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 018582          253 DCLEKAIDTGRGDG-GKWV-PSSETIRTFMRHFEQEKDVDGAEGFLEILKKA  302 (353)
Q Consensus       253 ~~~~~~~~~~~~~~-~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  302 (353)
                      ..++.+........ .... ...........++...|+.+.|.+.+......
T Consensus       285 ~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~  336 (355)
T cd05804         285 KLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD  336 (355)
T ss_pred             HHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            99999877532100 0000 01222223333567899999999999887663

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.20  E-value=1.1e-09  Score=88.43  Aligned_cols=251  Identities=17%  Similarity=0.119  Sum_probs=138.3

Q ss_pred             HHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHH
Q 018582           31 YAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEK  110 (353)
Q Consensus        31 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  110 (353)
                      +.-.|++..++.-.+ .....-..+......+.+++...|+.+.+.   .++...  ..|.......+...+...++-+.
T Consensus        11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~--~~~~l~av~~la~y~~~~~~~e~   84 (290)
T PF04733_consen   11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKS--SSPELQAVRLLAEYLSSPSDKES   84 (290)
T ss_dssp             HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT--SSCCCHHHHHHHHHHCTSTTHHC
T ss_pred             HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccC--CChhHHHHHHHHHHHhCccchHH
Confidence            344577777765554 222111112334455667777777765433   333332  34555554444444433344445


Q ss_pred             HHHHHHHHHHccCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 018582          111 AERALKELENRNAHR-DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWE  189 (353)
Q Consensus       111 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  189 (353)
                      +..-+++.......+ +..........+...|++++|+++++..      .+.......+.++.+.++++.|.+.++.|.
T Consensus        85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~  158 (290)
T PF04733_consen   85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ  158 (290)
T ss_dssp             HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            554444433222221 2222223334566677888887776532      345566667777888888888888888877


Q ss_pred             hcCCCCcHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCC
Q 018582          190 SGCATYDIRVTNVMIGAYAK----EGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGD  265 (353)
Q Consensus       190 ~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~  265 (353)
                      +.+  .| .+...+..++..    .+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+....+.  
T Consensus       159 ~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~--  232 (290)
T PF04733_consen  159 QID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP--  232 (290)
T ss_dssp             CCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C--
T ss_pred             hcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--
Confidence            653  22 233334443332    33577888888887654 456777777777788888888888888877765541  


Q ss_pred             CCCCcccHHHHHHHHHHHHhcCCh-hhHHHHHHHHHhcCC
Q 018582          266 GGKWVPSSETIRTFMRHFEQEKDV-DGAEGFLEILKKAVD  304 (353)
Q Consensus       266 ~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~  304 (353)
                           -++.+...++.+....|+. +.+.+.+.++....|
T Consensus       233 -----~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p  267 (290)
T PF04733_consen  233 -----NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNP  267 (290)
T ss_dssp             -----CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred             -----CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence                 3456666677777777776 556677777766554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.20  E-value=2.6e-07  Score=80.82  Aligned_cols=120  Identities=13%  Similarity=0.080  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc-HHHHH
Q 018582          199 VTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIR  277 (353)
Q Consensus       199 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~  277 (353)
                      .|......+.+.+..++|...+.+..... ......|......+...|.+++|.+.|......+        |+ +.+..
T Consensus       652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld--------P~hv~s~~  722 (799)
T KOG4162|consen  652 LWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD--------PDHVPSMT  722 (799)
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC--------CCCcHHHH
Confidence            34455566667777777777777666542 2244556666667778889999999999888876        54 67888


Q ss_pred             HHHHHHHhcCChhhHHH--HHHHHHhcCCCCChhhhHHHHHHHHHcCCChHHH
Q 018582          278 TFMRHFEQEKDVDGAEG--FLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVM  328 (353)
Q Consensus       278 ~l~~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~  328 (353)
                      ++..++.+.|+..-|..  ++..+.+.++ .+...|..|...+-+.|+...+.
T Consensus       723 Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aa  774 (799)
T KOG4162|consen  723 ALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAA  774 (799)
T ss_pred             HHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHH
Confidence            99999999999888888  9999999999 99999999999999999955544

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.19  E-value=1.2e-06  Score=72.67  Aligned_cols=328  Identities=12%  Similarity=0.091  Sum_probs=232.8

Q ss_pred             hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCc-chHHHHHHHHHhcCChhHHHHHHH
Q 018582            2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDS-YTYNVWMRALAAVNDISGAERVIE   80 (353)
Q Consensus         2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~   80 (353)
                      +..|+.+|++...-+. .+...|-.-+.+=.++..+..|..+++.....  -|-+ ..|.-.+..=-..|++..|.++|+
T Consensus        89 ~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqife  165 (677)
T KOG1915|consen   89 IQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQIFE  165 (677)
T ss_pred             HHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            4679999999987664 67778888888889999999999999999874  3443 355556666667899999999999


Q ss_pred             HHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCC--
Q 018582           81 EMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFP--  158 (353)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--  158 (353)
                      +-.+   ..|+...|.+.|+.-.+...++.|..++++..-  +.|++.+|-.....=.+.|....+..+|+...+.--  
T Consensus       166 rW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d  240 (677)
T KOG1915|consen  166 RWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDD  240 (677)
T ss_pred             HHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence            9988   689999999999999999999999999999865  458999999999988999999999999998766421  


Q ss_pred             CCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHhcCChHHHHHH--------HHHHHhcCCC
Q 018582          159 NTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATY-DIRVTNVMIGAYAKEGRLENAEEL--------KERARRRGAD  229 (353)
Q Consensus       159 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~--------~~~~~~~~~~  229 (353)
                      ..+...|.+...--.+...++.|.-+|+..+..-++. ....|......--+.|+.......        |+.+...+ +
T Consensus       241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p  319 (677)
T KOG1915|consen  241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-P  319 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-C
Confidence            1223345555555566778899999999888764332 145565555555555654433332        44455543 3


Q ss_pred             CChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc--HHHHHHHHHH--------HHhcCChhhHHHHHHHH
Q 018582          230 PNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS--SETIRTFMRH--------FEQEKDVDGAEGFLEIL  299 (353)
Q Consensus       230 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~--------~~~~~~~~~a~~~~~~~  299 (353)
                      -|-.+|--.++.-...|+.+...++|++.+..- +      |-  ...|...|-.        -....+.+.+.++++..
T Consensus       320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-p------p~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~  392 (677)
T KOG1915|consen  320 YNYDSWFDYLRLEESVGDKDRIRETYERAIANV-P------PASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQAC  392 (677)
T ss_pred             CCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-C------chhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            467788888888888899999999999999864 2      31  1223322222        13467888999999988


Q ss_pred             HhcCCCCChhhhHHHHHHHHH----cCCChHHHHHHHHhCCCccCHhHHHH
Q 018582          300 KKAVDDLGVEVFEPLIRTYAA----AGRTSPVMLRRLKMEKVEVSEASKKL  346 (353)
Q Consensus       300 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~~~~~~m~~~~~~p~~~~~~~  346 (353)
                      ++.=| ....|+..+=..|++    +.+...+-...=.+.|.-|...+|..
T Consensus       393 l~lIP-HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~  442 (677)
T KOG1915|consen  393 LDLIP-HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKG  442 (677)
T ss_pred             HhhcC-cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHH
Confidence            88555 555566555444443    33322221112234566777666543

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.18  E-value=3.7e-09  Score=85.51  Aligned_cols=241  Identities=13%  Similarity=0.108  Sum_probs=162.3

Q ss_pred             HHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCH
Q 018582           64 RALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNL  143 (353)
Q Consensus        64 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  143 (353)
                      +-+.-.|++..++.-.+ ..... ...+......+.+++...|+.+.++   .++... ..|.......+...+...++-
T Consensus         9 rn~fy~G~Y~~~i~e~~-~~~~~-~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~~   82 (290)
T PF04733_consen    9 RNQFYLGNYQQCINEAS-LKSFS-PENKLERDFYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSDK   82 (290)
T ss_dssp             HHHHCTT-HHHHCHHHH-CHTST-CHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTTH
T ss_pred             HHHHHhhhHHHHHHHhh-ccCCC-chhHHHHHHHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccch
Confidence            34445688888876655 22221 2233445567889999999877654   444333 366777776666655544555


Q ss_pred             HHHHHHHHHHHHhCCC-CChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018582          144 SEVYRIWRSLRLAFPN-TANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKER  222 (353)
Q Consensus       144 ~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  222 (353)
                      +.++.-+++....... .+..........+...|++++|.++++..      .+.......+..|.+.++++.|.+.++.
T Consensus        83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~  156 (290)
T PF04733_consen   83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN  156 (290)
T ss_dssp             HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            5665555444333222 23333333345566789999999888652      3677778889999999999999999999


Q ss_pred             HHhcCCCCChhhHHHHHHHHH----ccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHH
Q 018582          223 ARRRGADPNAKTWEIFSDYYL----RNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEI  298 (353)
Q Consensus       223 ~~~~~~~p~~~~~~~li~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  298 (353)
                      |.+.  ..| .+...+..++.    -.+.+.+|..+|+++.+.       +.+++.+.+.+..+....|++++|.+++++
T Consensus       157 ~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-------~~~t~~~lng~A~~~l~~~~~~eAe~~L~~  226 (290)
T PF04733_consen  157 MQQI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-------FGSTPKLLNGLAVCHLQLGHYEEAEELLEE  226 (290)
T ss_dssp             HHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-------S--SHHHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-------cCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            9875  333 44444555443    234699999999998776       237889999999999999999999999999


Q ss_pred             HHhcCCCCChhhhHHHHHHHHHcCCChHH
Q 018582          299 LKKAVDDLGVEVFEPLIRTYAAAGRTSPV  327 (353)
Q Consensus       299 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~  327 (353)
                      ..+.++ .++.+...++.+....|+..+.
T Consensus       227 al~~~~-~~~d~LaNliv~~~~~gk~~~~  254 (290)
T PF04733_consen  227 ALEKDP-NDPDTLANLIVCSLHLGKPTEA  254 (290)
T ss_dssp             HCCC-C-CHHHHHHHHHHHHHHTT-TCHH
T ss_pred             HHHhcc-CCHHHHHHHHHHHHHhCCChhH
Confidence            998888 7888888899999999997443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.17  E-value=7.9e-07  Score=76.40  Aligned_cols=184  Identities=13%  Similarity=0.083  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 018582            3 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEM   82 (353)
Q Consensus         3 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~   82 (353)
                      ++|.+....-.+.++ .+.+.|..+.-.+....++++|++.|......+ +.|...|.-+.-.-++.|+++.....-...
T Consensus        58 ~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~L  135 (700)
T KOG1156|consen   58 EEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQL  135 (700)
T ss_pred             HHHHHHHHHHhccCc-ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            344444444444333 455667777666666777777777777766643 334445554444445556666666655555


Q ss_pred             HHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcc-CCCCHHHHHHHH------HHHHccCCHHHHHHHHHHHHH
Q 018582           83 KRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRN-AHRDLSAYQFLI------TLYGQTGNLSEVYRIWRSLRL  155 (353)
Q Consensus        83 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~  155 (353)
                      .+.  .+.....|..++.++.-.|+...|..++++..+.. ..|+...+....      ......|..++|.+.+.....
T Consensus       136 Lql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~  213 (700)
T KOG1156|consen  136 LQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK  213 (700)
T ss_pred             HHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh
Confidence            554  34444555566666666666667766666665433 123433332221      122334444444444443222


Q ss_pred             hCCCCChhHH-HHHHHHHHhcCChhHHHHHHHHHHhcC
Q 018582          156 AFPNTANISY-LNMIQVLVNLKDLPGAEKCFKEWESGC  192 (353)
Q Consensus       156 ~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~  192 (353)
                      . + .|...+ .+-...+.+.++.++|..++..+....
T Consensus       214 ~-i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn  249 (700)
T KOG1156|consen  214 Q-I-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN  249 (700)
T ss_pred             H-H-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC
Confidence            1 1 111111 223344555566666666666655543

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.16  E-value=4.7e-07  Score=71.97  Aligned_cols=311  Identities=10%  Similarity=0.053  Sum_probs=227.8

Q ss_pred             CchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHH-HH
Q 018582           20 SSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDS-YTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTF-SN   97 (353)
Q Consensus        20 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~   97 (353)
                      ++.-.--+...+...|++..|+.-|....+-  .|+. .++-.-...|...|+-..|+.=+....+   .+||-..- ..
T Consensus        37 dvekhlElGk~lla~~Q~sDALt~yHaAve~--dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle---lKpDF~~ARiQ  111 (504)
T KOG0624|consen   37 DVEKHLELGKELLARGQLSDALTHYHAAVEG--DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE---LKPDFMAARIQ  111 (504)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--CchhHHHHHHHHHHHhhhcCCccchhhHHHHHh---cCccHHHHHHH
Confidence            4444556677788889999999999888763  2332 2333444578888999999999999988   57875432 23


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHccCCCCH--H------------HHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChh
Q 018582           98 LASIYVEAGLFEKAERALKELENRNAHRDL--S------------AYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANI  163 (353)
Q Consensus        98 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  163 (353)
                      -...+.+.|.+++|..=|+.+.++.+....  .            .....+..+...|+...|++....+.+..+ -|..
T Consensus       112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda~  190 (504)
T KOG0624|consen  112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDAS  190 (504)
T ss_pred             hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chhH
Confidence            456678999999999999999887653211  1            122334556778999999999999988755 3677


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhh----HHHH-
Q 018582          164 SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKT----WEIF-  238 (353)
Q Consensus       164 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~----~~~l-  238 (353)
                      .|..-..+|...|++..|..-++...+.... ++..+-.+-..+...|+.+.++...++-++.  .||...    |-.+ 
T Consensus       191 l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklk  267 (504)
T KOG0624|consen  191 LRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLK  267 (504)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHH
Confidence            7888889999999999999888888776533 7777778888899999999999999988875  455432    2111 


Q ss_pred             --------HHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhh
Q 018582          239 --------SDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEV  310 (353)
Q Consensus       239 --------i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  310 (353)
                              +......++|.++++-.+..++.....   .......+..+-.++...|++.+|++...++.+..+ .|..+
T Consensus       268 Kv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~---~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~-~dv~~  343 (504)
T KOG0624|consen  268 KVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEE---TMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDP-DDVQV  343 (504)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcc---cceeeeeeheeeecccccCCHHHHHHHHHHHHhcCc-hHHHH
Confidence                    123456788888998888888876210   001123455666778888999999999999999888 77888


Q ss_pred             hHHHHHHHHHcCCChHHHHHHHHhCCCccCHhH
Q 018582          311 FEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEAS  343 (353)
Q Consensus       311 ~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~  343 (353)
                      +---..+|.-...+.+++-+.-....+.++...
T Consensus       344 l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~  376 (504)
T KOG0624|consen  344 LCDRAEAYLGDEMYDDAIHDYEKALELNESNTR  376 (504)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHH
Confidence            888888888777788888777666666666543

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.15  E-value=2.3e-08  Score=84.34  Aligned_cols=256  Identities=14%  Similarity=0.088  Sum_probs=194.3

Q ss_pred             HHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCH
Q 018582           29 TLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLF  108 (353)
Q Consensus        29 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  108 (353)
                      .-+.+.|+..+|.-.|+..+... +-+...|..|.......++-..|+..+++..+.  .+.|....-.|.-.|...|.-
T Consensus       293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNeg~q  369 (579)
T KOG1125|consen  293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAVSYTNEGLQ  369 (579)
T ss_pred             HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhH
Confidence            34678899999999999988864 556789999999999999999999999999997  577788888999999999999


Q ss_pred             HHHHHHHHHHHHccCCCCHHHHHHHH-----------HHHHccCCHHHHHHHHHHHHH-hCCCCChhHHHHHHHHHHhcC
Q 018582          109 EKAERALKELENRNAHRDLSAYQFLI-----------TLYGQTGNLSEVYRIWRSLRL-AFPNTANISYLNMIQVLVNLK  176 (353)
Q Consensus       109 ~~a~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~  176 (353)
                      ..|++.++.-+...++     |..+.           ..+.....+....++|-++.. .+..+|......|.-.|.-.|
T Consensus       370 ~~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~  444 (579)
T KOG1125|consen  370 NQALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG  444 (579)
T ss_pred             HHHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch
Confidence            9999999987654322     00000           111222234455555555544 444578888888888899999


Q ss_pred             ChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHccCChHHHHHHH
Q 018582          177 DLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPN-AKTWEIFSDYYLRNGDMKLAVDCL  255 (353)
Q Consensus       177 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~  255 (353)
                      ++++|...|+..+...+. |...||.|...++...+.++|+..|++.++.  .|. +.....|.-+|...|.+++|.+.|
T Consensus       445 efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hl  521 (579)
T KOG1125|consen  445 EFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHL  521 (579)
T ss_pred             HHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence            999999999999988755 8999999999999999999999999999985  555 456667788899999999999998


Q ss_pred             HHHHHcCCC---CCCCCcccHHHHHHHHHHHHhcCChhhHHHH
Q 018582          256 EKAIDTGRG---DGGKWVPSSETIRTFMRHFEQEKDVDGAEGF  295 (353)
Q Consensus       256 ~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  295 (353)
                      -..+.....   +.....++..+|..|=.++.-.++.|.+.++
T Consensus       522 L~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a  564 (579)
T KOG1125|consen  522 LEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA  564 (579)
T ss_pred             HHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence            876654321   1111223456777776677777777655443

>PLN02789 farnesyltranstransferase

Probab=99.13  E-value=5.4e-07  Score=74.03  Aligned_cols=203  Identities=8%  Similarity=0.026  Sum_probs=84.9

Q ss_pred             CChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCH--HHH
Q 018582           70 NDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAG-LFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNL--SEV  146 (353)
Q Consensus        70 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a  146 (353)
                      +..++|+.+..++++.  .+-+..+|+....++...| ++++++..++++....+. +..+|+.-...+.+.|+.  +++
T Consensus        51 e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~e  127 (320)
T PLN02789         51 ERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKE  127 (320)
T ss_pred             CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHH
Confidence            3444444444444443  2233333333333333333 334444444444443332 333333333233333321  334


Q ss_pred             HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc---CCh----HHHHHH
Q 018582          147 YRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKE---GRL----ENAEEL  219 (353)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~----~~a~~~  219 (353)
                      +.+++++.+..+ -+-.+|+...-++...|+++++.+.++++++.++. |..+|+.....+.+.   |..    ++....
T Consensus       128 l~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y  205 (320)
T PLN02789        128 LEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKY  205 (320)
T ss_pred             HHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHH
Confidence            444444444433 23444444444444444555555555555444432 334444333333222   111    234444


Q ss_pred             HHHHHhcCCCCChhhHHHHHHHHHcc----CChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHh
Q 018582          220 KERARRRGADPNAKTWEIFSDYYLRN----GDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQ  285 (353)
Q Consensus       220 ~~~~~~~~~~p~~~~~~~li~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  285 (353)
                      ..++....+ -|...|+.+...+...    +...+|.+.+.+..+.++       .+...+..|+..|+.
T Consensus       206 ~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-------~s~~al~~l~d~~~~  267 (320)
T PLN02789        206 TIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-------NHVFALSDLLDLLCE  267 (320)
T ss_pred             HHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-------CcHHHHHHHHHHHHh
Confidence            444444322 2445555555555442    223445555555444331       345555556665554

>PLN02789 farnesyltranstransferase

Probab=99.13  E-value=3.1e-07  Score=75.39  Aligned_cols=215  Identities=9%  Similarity=0.071  Sum_probs=161.2

Q ss_pred             hHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCc-chHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q 018582           23 PFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDS-YTYNVWMRALAAVN-DISGAERVIEEMKRDGRVAADWTTFSNLAS  100 (353)
Q Consensus        23 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  100 (353)
                      ++..+-..+...++.++|+.+++++.+.  .|+. .+|+..-.++...+ ++++++..++++.+.  .+.+..+|+...-
T Consensus        39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~  114 (320)
T PLN02789         39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRW  114 (320)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHH
Confidence            3455556667788999999999999885  3544 45666666666677 679999999999987  5677777876666


Q ss_pred             HHHhcCCH--HHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc---
Q 018582          101 IYVEAGLF--EKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNL---  175 (353)
Q Consensus       101 ~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---  175 (353)
                      .+.+.|+.  ++++.+++++.+..+. +..+|+.....+...|+++++++.++++.+.++. |...|+.....+.+.   
T Consensus       115 ~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l  192 (320)
T PLN02789        115 LAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLL  192 (320)
T ss_pred             HHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccc
Confidence            66666653  6788999899887665 8889999999999999999999999999998764 666777666666554   


Q ss_pred             CCh----hHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc----CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHcc
Q 018582          176 KDL----PGAEKCFKEWESGCATYDIRVTNVMIGAYAKE----GRLENAEELKERARRRGADPNAKTWEIFSDYYLRN  245 (353)
Q Consensus       176 ~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~  245 (353)
                      |..    ++..+...++....+. |...|+-+...+...    ++..+|...+.+....++ .+......|++.|+..
T Consensus       193 ~~~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~~  268 (320)
T PLN02789        193 GGLEAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCEG  268 (320)
T ss_pred             ccccccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHhh
Confidence            223    4567777777776654 888888888888773    445678888888776543 3567778888888753

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.11  E-value=2.7e-08  Score=83.99  Aligned_cols=245  Identities=14%  Similarity=0.091  Sum_probs=189.6

Q ss_pred             HHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHH
Q 018582           66 LAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSE  145 (353)
Q Consensus        66 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  145 (353)
                      +.+.|++.+|.-.|+..++.  .|-+...|..|...-...++-..|+..+.+..+..+. +..+.-.|.-.|...|.-..
T Consensus       295 lm~nG~L~~A~LafEAAVkq--dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~  371 (579)
T KOG1125|consen  295 LMKNGDLSEAALAFEAAVKQ--DPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ  371 (579)
T ss_pred             HHhcCCchHHHHHHHHHHhh--ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence            56789999999999999987  6788999999999999999999999999999887665 78888899999999999999


Q ss_pred             HHHHHHHHHHhCCCC--------ChhHHHHHHHHHHhcCChhHHHHHHHHHH-hcCCCCcHHHHHHHHHHHHhcCChHHH
Q 018582          146 VYRIWRSLRLAFPNT--------ANISYLNMIQVLVNLKDLPGAEKCFKEWE-SGCATYDIRVTNVMIGAYAKEGRLENA  216 (353)
Q Consensus       146 a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~a  216 (353)
                      |++.++.-....++-        +...-..  ..+.....+....++|-++. ..+..+|..++..|.-.|--.|++++|
T Consensus       372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra  449 (579)
T KOG1125|consen  372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA  449 (579)
T ss_pred             HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence            999999876543210        0000000  11112223344555555554 444457888899999999999999999


Q ss_pred             HHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc-HHHHHHHHHHHHhcCChhhHHHH
Q 018582          217 EELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGF  295 (353)
Q Consensus       217 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~  295 (353)
                      .+.|+..+...+ -|..+||.|...++...+.++|+..|.+.++..        |+ +.....|.-+|...|.+++|.+.
T Consensus       450 iDcf~~AL~v~P-nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--------P~yVR~RyNlgIS~mNlG~ykEA~~h  520 (579)
T KOG1125|consen  450 VDCFEAALQVKP-NDYLLWNRLGATLANGNRSEEAISAYNRALQLQ--------PGYVRVRYNLGISCMNLGAYKEAVKH  520 (579)
T ss_pred             HHHHHHHHhcCC-chHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--------CCeeeeehhhhhhhhhhhhHHHHHHH
Confidence            999999998643 267899999999999999999999999999976        76 66778888899999999999998


Q ss_pred             HHHHHhcCC---------CCChhhhHHHHHHHHHcCCC
Q 018582          296 LEILKKAVD---------DLGVEVFEPLIRTYAAAGRT  324 (353)
Q Consensus       296 ~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~  324 (353)
                      |=.++....         .++...|.+|=.++.-.++.
T Consensus       521 lL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~  558 (579)
T KOG1125|consen  521 LLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRS  558 (579)
T ss_pred             HHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCc
Confidence            876655221         12345788877777766663

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=99.11  E-value=2e-07  Score=86.44  Aligned_cols=239  Identities=14%  Similarity=0.133  Sum_probs=174.1

Q ss_pred             HHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCC-----cchHHHHHHHHHhcCChhHHHHHHHHHH
Q 018582            9 LEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPD-----SYTYNVWMRALAAVNDISGAERVIEEMK   83 (353)
Q Consensus         9 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~   83 (353)
                      |++..... |.+...|-.-|....+.++.++|.++.++.... +.+.     ...|.++++.-..-|.-+...++|+++.
T Consensus      1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred             HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence            44444443 245677888888888999999999999888764 2222     2356677776666777888888999888


Q ss_pred             HcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCh-
Q 018582           84 RDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTAN-  162 (353)
Q Consensus        84 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-  162 (353)
                      +.   -....+|..|...|.+.+.+++|-++++.|.+.-- -....|...+..+.+..+-++|..++.+..+.-++... 
T Consensus      1525 qy---cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv 1600 (1710)
T KOG1070|consen 1525 QY---CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV 1600 (1710)
T ss_pred             Hh---cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH
Confidence            84   34456778889999999999999999999866433 46678888889999988888899988887776443222 


Q ss_pred             hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCh--hhHHHHHH
Q 018582          163 ISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNA--KTWEIFSD  240 (353)
Q Consensus       163 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~li~  240 (353)
                      ......+..-.+.|+.+.+..+|+......++ -...|+..|+.-.++|+.+.++.+|+++...++.|..  ..|...+.
T Consensus      1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLe 1679 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLE 1679 (1710)
T ss_pred             HHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHH
Confidence            23444556667889999999999988877654 6678999999999999999999999998888766543  34555555


Q ss_pred             HHHccCChHHHHHH
Q 018582          241 YYLRNGDMKLAVDC  254 (353)
Q Consensus       241 ~~~~~~~~~~a~~~  254 (353)
                      .=-..|+-+.+..+
T Consensus      1680 yEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1680 YEKSHGDEKNVEYV 1693 (1710)
T ss_pred             HHHhcCchhhHHHH
Confidence            54555654444433

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.05  E-value=6.2e-06  Score=71.13  Aligned_cols=306  Identities=12%  Similarity=0.100  Sum_probs=210.2

Q ss_pred             hhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHH
Q 018582           22 MPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASI  101 (353)
Q Consensus        22 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  101 (353)
                      .+.....-.+...|+-++|.+......+.. .-+.+.|..+.-.+-...++++|.+.|......  .+.|...+.-+.-.
T Consensus        42 eslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslL  118 (700)
T KOG1156|consen   42 ESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--EKDNLQILRDLSLL  118 (700)
T ss_pred             hhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence            344444444556788889988887776643 346667888877777889999999999999997  47788888888888


Q ss_pred             HHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhC-CCCChhHHHHHH------HHHHh
Q 018582          102 YVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAF-PNTANISYLNMI------QVLVN  174 (353)
Q Consensus       102 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~  174 (353)
                      -++.|+++.....-..+.+..+. ....|..++.++.-.|+...|..++++..+.. ..|+...|....      .....
T Consensus       119 Q~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E  197 (700)
T KOG1156|consen  119 QIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIE  197 (700)
T ss_pred             HHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH
Confidence            88999999998888888775443 56678888899999999999999999987764 245555554332      34456


Q ss_pred             cCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHH-HHHccCC------
Q 018582          175 LKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSD-YYLRNGD------  247 (353)
Q Consensus       175 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~-~~~~~~~------  247 (353)
                      .|..+.|.+.+..-...-+. ....-..-...+.+.+++++|..++..+...  .||..-|..... ++.+-.+      
T Consensus       198 ~g~~q~ale~L~~~e~~i~D-kla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk  274 (700)
T KOG1156|consen  198 AGSLQKALEHLLDNEKQIVD-KLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALK  274 (700)
T ss_pred             cccHHHHHHHHHhhhhHHHH-HHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHH
Confidence            78888888887765543211 2223334567788999999999999999987  456555543332 2211111      


Q ss_pred             -----------------------------hHHHHHHHHHHHHcCCCCCCC------------------------------
Q 018582          248 -----------------------------MKLAVDCLEKAIDTGRGDGGK------------------------------  268 (353)
Q Consensus       248 -----------------------------~~~a~~~~~~~~~~~~~~~~~------------------------------  268 (353)
                                                   .+..-+++..+++.|+++--+                              
T Consensus       275 ~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~  354 (700)
T KOG1156|consen  275 ALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTG  354 (700)
T ss_pred             HHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhccccc
Confidence                                         112223444444444443311                              


Q ss_pred             ----------CcccHH--HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCC--hHHHHHHHHh
Q 018582          269 ----------WVPSSE--TIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRT--SPVMLRRLKM  334 (353)
Q Consensus       269 ----------~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~~~~~~m~~  334 (353)
                                -.|++.  ++..++..+-+.|+++.|...++.....-| .-+..|..-.+.+..+|..  +.+.+.+-++
T Consensus       355 ~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTP-TliEly~~KaRI~kH~G~l~eAa~~l~ea~e  433 (700)
T KOG1156|consen  355 MFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTP-TLIELYLVKARIFKHAGLLDEAAAWLDEAQE  433 (700)
T ss_pred             CCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCc-hHHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Confidence                      145544  344566778899999999999999888776 5667777888999999994  3444444443


Q ss_pred             C
Q 018582          335 E  335 (353)
Q Consensus       335 ~  335 (353)
                      .
T Consensus       434 l  434 (700)
T KOG1156|consen  434 L  434 (700)
T ss_pred             c
Confidence            3

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.03  E-value=7.3e-06  Score=69.94  Aligned_cols=120  Identities=19%  Similarity=0.131  Sum_probs=69.5

Q ss_pred             HHHHHHHhcCChHHHHHHHH--------HHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccH
Q 018582          202 VMIGAYAKEGRLENAEELKE--------RARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSS  273 (353)
Q Consensus       202 ~li~~~~~~g~~~~a~~~~~--------~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  273 (353)
                      .++......|+++.|.+++.        .+.+.+..|-  +...+...+.+.++-+.|..++......-..    ..+..
T Consensus       381 ~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~----~~t~s  454 (652)
T KOG2376|consen  381 LRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRK----QQTGS  454 (652)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHH----hcccc
Confidence            33444445566666666655        3333333332  2333444444444444455555444433100    01222


Q ss_pred             H----HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCC-ChHHH
Q 018582          274 E----TIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR-TSPVM  328 (353)
Q Consensus       274 ~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~~~  328 (353)
                      .    ++.-+...-.+.|+.++|..+++++.+.++ ++..+...++.+|++..- .++++
T Consensus       455 ~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~-~d~~~l~~lV~a~~~~d~eka~~l  513 (652)
T KOG2376|consen  455 IALLSLMREAAEFKLRHGNEEEASSLLEELVKFNP-NDTDLLVQLVTAYARLDPEKAESL  513 (652)
T ss_pred             hHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCC-chHHHHHHHHHHHHhcCHHHHHHH
Confidence            2    233333334578999999999999999999 999999999999998766 44444

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=99.02  E-value=1.2e-06  Score=81.51  Aligned_cols=232  Identities=13%  Similarity=0.158  Sum_probs=156.3

Q ss_pred             CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHH
Q 018582           55 DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAA-----DWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSA  129 (353)
Q Consensus        55 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  129 (353)
                      +...|-..|..+.+.++.+.|.++.+++...  +.+     -..+|.++++.-..-|.-+...++|+++.+..  -....
T Consensus      1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t--IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V 1532 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT--INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTV 1532 (1710)
T ss_pred             cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh--CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHH
Confidence            3456777777777888888888888877764  322     23466677777777777777778888776632  13446


Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-cHHHHHHHHHHHH
Q 018582          130 YQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATY-DIRVTNVMIGAYA  208 (353)
Q Consensus       130 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~  208 (353)
                      |..|...|.+.+.+++|.++++.|.+.-- .....|...+..+.+.++-+.|..++.+..+.-++. ........++.-.
T Consensus      1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence            77777888888888888888888876632 455677778888888888888888888776643321 2333444455556


Q ss_pred             hcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc--HHHHHHHHHHHHhc
Q 018582          209 KEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS--SETIRTFMRHFEQE  286 (353)
Q Consensus       209 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~  286 (353)
                      +.|+.+.+..+|+.....-++ -...|+..|+.-.++|+.+.+..+|++.+..+.+      |.  -..|...+..=-..
T Consensus      1612 k~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~------~kkmKfffKkwLeyEk~~ 1684 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS------IKKMKFFFKKWLEYEKSH 1684 (1710)
T ss_pred             hcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC------hhHhHHHHHHHHHHHHhc
Confidence            778888888888877765332 4567888888888888888888888888887743      32  34555556555556


Q ss_pred             CChhhHHHHHHH
Q 018582          287 KDVDGAEGFLEI  298 (353)
Q Consensus       287 ~~~~~a~~~~~~  298 (353)
                      |+-+.++.+=.+
T Consensus      1685 Gde~~vE~VKar 1696 (1710)
T KOG1070|consen 1685 GDEKNVEYVKAR 1696 (1710)
T ss_pred             CchhhHHHHHHH
Confidence            665555444433

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.02  E-value=8.9e-08  Score=76.30  Aligned_cols=285  Identities=15%  Similarity=0.107  Sum_probs=172.6

Q ss_pred             hHHHHHHHHHHHhcCCCCCchhHHHHHH-HHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhc--CC-------
Q 018582            2 TEKAEALLEKMKELNLGFSSMPFNSLMT-LYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAV--ND-------   71 (353)
Q Consensus         2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~-~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--~~-------   71 (353)
                      +++|++++.++...+  |.....|.-+. +|.+..-++-+.+++.-..+. ++.++...|.......+.  |+       
T Consensus       167 YQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k  243 (557)
T KOG3785|consen  167 YQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKK  243 (557)
T ss_pred             HHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHH
Confidence            578999999988755  56666665543 456677777788888776664 233333333333222221  11       


Q ss_pred             --------------------------hhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCC
Q 018582           72 --------------------------ISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHR  125 (353)
Q Consensus        72 --------------------------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  125 (353)
                                                -+.|++++--+..   +.|...  -.|+-.|.+.+++.+|..+.+++.-    .
T Consensus       244 ~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~---~IPEAR--lNL~iYyL~q~dVqeA~~L~Kdl~P----t  314 (557)
T KOG3785|consen  244 ELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMK---HIPEAR--LNLIIYYLNQNDVQEAISLCKDLDP----T  314 (557)
T ss_pred             HHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHh---hChHhh--hhheeeecccccHHHHHHHHhhcCC----C
Confidence                                      1222222222222   223222  2566678889999999988877631    1


Q ss_pred             CHHHHHHHHHHHHc-------cCCHHHHHHHHHHHHHhCCCCChh-HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcH
Q 018582          126 DLSAYQFLITLYGQ-------TGNLSEVYRIWRSLRLAFPNTANI-SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDI  197 (353)
Q Consensus       126 ~~~~~~~l~~~~~~-------~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  197 (353)
                      ++.-|-.-.-.+..       .....-|.+.|+-.-+.+..-|.. --.++..++.-..+++++.-.++.+..--..-|.
T Consensus       315 tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~  394 (557)
T KOG3785|consen  315 TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDD  394 (557)
T ss_pred             ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch
Confidence            22222111111222       223445566665544444333332 2345666666777889988888888776544344


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHH-HHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHH-
Q 018582          198 RVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWE-IFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSET-  275 (353)
Q Consensus       198 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~-~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-  275 (353)
                      .-+ .+.++++..|++.+|.++|-++....++ |..+|. .+.++|.+++.++.|++++-++-..         .+..+ 
T Consensus       395 Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~---------~e~fsL  463 (557)
T KOG3785|consen  395 FNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTP---------SERFSL  463 (557)
T ss_pred             hhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCc---------hhHHHH
Confidence            444 4789999999999999999988766555 455554 4567888999999998876554332         23333 


Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhh
Q 018582          276 IRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVF  311 (353)
Q Consensus       276 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  311 (353)
                      ...+..-|.+++.+--|-+.|+.+...+|  ++.-|
T Consensus       464 LqlIAn~CYk~~eFyyaaKAFd~lE~lDP--~pEnW  497 (557)
T KOG3785|consen  464 LQLIANDCYKANEFYYAAKAFDELEILDP--TPENW  497 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHccCC--Ccccc
Confidence            34445578899999999999998877775  44444

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.00  E-value=1.1e-06  Score=77.08  Aligned_cols=287  Identities=15%  Similarity=0.089  Sum_probs=197.5

Q ss_pred             HHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 018582            3 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEM   82 (353)
Q Consensus         3 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~   82 (353)
                      .++++.+++..+.+. .|+.+...+.-.|+..++.+.|.+..++..+-+-.-+...|..+.-.+...+++.+|+.+.+..
T Consensus       461 ~kslqale~av~~d~-~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~a  539 (799)
T KOG4162|consen  461 KKSLQALEEAVQFDP-TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAA  539 (799)
T ss_pred             HHHHHHHHHHHhcCC-CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence            467888888887765 4555555556678888999999999999988765678888999999999999999999999887


Q ss_pred             HHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---------------------c-------CCCCHHHHHHHH
Q 018582           83 KRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENR---------------------N-------AHRDLSAYQFLI  134 (353)
Q Consensus        83 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------------~-------~~~~~~~~~~l~  134 (353)
                      ...  .+.|......-+..-...++.++++.....+..-                     |       +.-...++..+.
T Consensus       540 l~E--~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls  617 (799)
T KOG4162|consen  540 LEE--FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS  617 (799)
T ss_pred             HHH--hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHH
Confidence            775  3343333333333334456666655544443210                     0       000111222211


Q ss_pred             HHHHccCCHHHHHHHHHHHHHhC--CCCCh------hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 018582          135 TLYGQTGNLSEVYRIWRSLRLAF--PNTAN------ISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGA  206 (353)
Q Consensus       135 ~~~~~~~~~~~a~~~~~~~~~~~--~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  206 (353)
                      ......+  ..+..-.. +....  +.|+.      ..|......+.+.++.++|...+.+..+.. ......|......
T Consensus       618 ~l~a~~~--~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~  693 (799)
T KOG4162|consen  618 SLVASQL--KSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLL  693 (799)
T ss_pred             HHHHhhh--hhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHH
Confidence            1111000  00000000 11111  12221      245566778888999999999998888765 4477788888888


Q ss_pred             HHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHH--HHHHHHHcCCCCCCCCcccHHHHHHHHHHHH
Q 018582          207 YAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVD--CLEKAIDTGRGDGGKWVPSSETIRTFMRHFE  284 (353)
Q Consensus       207 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  284 (353)
                      +...|..++|.+.|......++. ++....++...+.+.|+..-|..  ++.++.+.+.       .+...|..+...+.
T Consensus       694 ~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-------~n~eaW~~LG~v~k  765 (799)
T KOG4162|consen  694 LEVKGQLEEAKEAFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-------LNHEAWYYLGEVFK  765 (799)
T ss_pred             HHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-------CCHHHHHHHHHHHH
Confidence            88999999999999998876422 56788899999999999888888  9999999871       46899999999999


Q ss_pred             hcCChhhHHHHHHHHHhcCC
Q 018582          285 QEKDVDGAEGFLEILKKAVD  304 (353)
Q Consensus       285 ~~~~~~~a~~~~~~~~~~~~  304 (353)
                      +.|+.++|...|....+...
T Consensus       766 ~~Gd~~~Aaecf~aa~qLe~  785 (799)
T KOG4162|consen  766 KLGDSKQAAECFQAALQLEE  785 (799)
T ss_pred             HccchHHHHHHHHHHHhhcc
Confidence            99999999999999888665

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.00  E-value=3.3e-07  Score=72.87  Aligned_cols=187  Identities=15%  Similarity=0.072  Sum_probs=125.8

Q ss_pred             CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCH--HH
Q 018582           55 DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADW---TTFSNLASIYVEAGLFEKAERALKELENRNAHRDL--SA  129 (353)
Q Consensus        55 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~  129 (353)
                      ....+..+...+...|+++.|...|+++....  +.+.   .++..+..++.+.|++++|...++++.+..+....  .+
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a  109 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA  109 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence            44567777778888899999999999888752  3222   45677888888999999999999998776543222  24


Q ss_pred             HHHHHHHHHcc--------CCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHH
Q 018582          130 YQFLITLYGQT--------GNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTN  201 (353)
Q Consensus       130 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  201 (353)
                      +..+...+...        |++++|.+.|+.+....+. +...+..+.....    ..      ...        .....
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~------~~~--------~~~~~  170 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LR------NRL--------AGKEL  170 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HH------HHH--------HHHHH
Confidence            44555555544        6788888888888776543 2222221111100    00      000        01122


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhcCC-CC-ChhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582          202 VMIGAYAKEGRLENAEELKERARRRGA-DP-NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG  262 (353)
Q Consensus       202 ~li~~~~~~g~~~~a~~~~~~~~~~~~-~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  262 (353)
                      .+...|.+.|++++|...+.+..+... .| ....+..+..++...|++++|..+++.+....
T Consensus       171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~  233 (235)
T TIGR03302       171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY  233 (235)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            566778899999999999999887532 12 34678889999999999999999998887764

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.00  E-value=2.7e-07  Score=71.94  Aligned_cols=287  Identities=12%  Similarity=0.080  Sum_probs=158.6

Q ss_pred             hHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHH-HHHH
Q 018582           23 PFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSN-LASI  101 (353)
Q Consensus        23 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~  101 (353)
                      -+.+.+..+.+..+++.|++++..-.++. +.+....+.+..+|-...++..|-..|+++-.   ..|...-|.. -...
T Consensus        12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q---l~P~~~qYrlY~AQS   87 (459)
T KOG4340|consen   12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ---LHPELEQYRLYQAQS   87 (459)
T ss_pred             chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hChHHHHHHHHHHHH
Confidence            46667777777777888887777666543 22566677777777777788888888877776   3455555532 3455


Q ss_pred             HHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHH--HHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChh
Q 018582          102 YVEAGLFEKAERALKELENRNAHRDLSAYQFLIT--LYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLP  179 (353)
Q Consensus       102 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  179 (353)
                      +-+.+.+..|+++...|.+.   ++...-..-+.  .....+++..+..+.++....+   +..+.....-...+.|+++
T Consensus        88 LY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyE  161 (459)
T KOG4340|consen   88 LYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYE  161 (459)
T ss_pred             HHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHH
Confidence            66777777777777776542   22211111122  2234566666666666553221   2233333344445677777


Q ss_pred             HHHHHHHHHHh-cCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChh-----------------hHHHHHHH
Q 018582          180 GAEKCFKEWES-GCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAK-----------------TWEIFSDY  241 (353)
Q Consensus       180 ~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-----------------~~~~li~~  241 (353)
                      .|.+-|+...+ .|.. ....||..+..| +.|+++.|++...++.++|++..+.                 +...-+++
T Consensus       162 aAvqkFqaAlqvsGyq-pllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa  239 (459)
T KOG4340|consen  162 AAVQKFQAALQVSGYQ-PLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA  239 (459)
T ss_pred             HHHHHHHHHHhhcCCC-chhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH
Confidence            77777777665 3444 344566544433 4567777777777777777652221                 11222333


Q ss_pred             HHccCChHHHHHHH----HHHHHc--CCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHH
Q 018582          242 YLRNGDMKLAVDCL----EKAIDT--GRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLI  315 (353)
Q Consensus       242 ~~~~~~~~~a~~~~----~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  315 (353)
                      ....=+.+.|+++-    +...+.  +.+|......|+.|...+.-.- ..+++....+-+.-+.+.+| -...||..++
T Consensus       240 l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlL  317 (459)
T KOG4340|consen  240 LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLL  317 (459)
T ss_pred             HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHH
Confidence            33333444444331    222221  3444433444555555443222 23345555555555555666 5566677777


Q ss_pred             HHHHHcCC
Q 018582          316 RTYAAAGR  323 (353)
Q Consensus       316 ~~~~~~g~  323 (353)
                      -.|++..-
T Consensus       318 llyCKNey  325 (459)
T KOG4340|consen  318 LLYCKNEY  325 (459)
T ss_pred             HHHhhhHH
Confidence            77776554

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.98  E-value=5.6e-07  Score=82.39  Aligned_cols=246  Identities=13%  Similarity=0.118  Sum_probs=166.4

Q ss_pred             CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHH
Q 018582           55 DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLI  134 (353)
Q Consensus        55 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  134 (353)
                      +...+..|+..+...+++++|.++.+...+.  .+-....|-.+...+.+.++.+.+..+                 .++
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l   90 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI   90 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence            3457788888888999999999999977775  333344444455567777775555544                 233


Q ss_pred             HHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChH
Q 018582          135 TLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLE  214 (353)
Q Consensus       135 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  214 (353)
                      .......++..+..+...|...+  -+...+..+..+|-+.|+.+++..+|+++.+..+. |+.+.|.+...|... +++
T Consensus        91 ~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~  166 (906)
T PRK14720         91 DSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKE  166 (906)
T ss_pred             hhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHH
Confidence            33334445544444455555533  24567888999999999999999999999998844 899999999999999 999


Q ss_pred             HHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCC-------------CcccHHHHHHHHH
Q 018582          215 NAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGK-------------WVPSSETIRTFMR  281 (353)
Q Consensus       215 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~l~~  281 (353)
                      +|.+++.+....               +...+++..+.++|.++..........             ..--..++..+-.
T Consensus       167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~  231 (906)
T PRK14720        167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYE  231 (906)
T ss_pred             HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHH
Confidence            999999887654               333445555555555555543110000             1122344555567


Q ss_pred             HHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChHHHH-HHHHhCCCccC
Q 018582          282 HFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVML-RRLKMEKVEVS  340 (353)
Q Consensus       282 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~-~~m~~~~~~p~  340 (353)
                      .|...++++++..+++.+.+..+ .|..+..-++.+|.+.=. ....+ +.++..|+.-+
T Consensus       232 ~y~~~~~~~~~i~iLK~iL~~~~-~n~~a~~~l~~~y~~kY~-~~~~~ee~l~~s~l~~~  289 (906)
T PRK14720        232 PYKALEDWDEVIYILKKILEHDN-KNNKAREELIRFYKEKYK-DHSLLEDYLKMSDIGNN  289 (906)
T ss_pred             HHhhhhhhhHHHHHHHHHHhcCC-cchhhHHHHHHHHHHHcc-CcchHHHHHHHhccccC
Confidence            78888999999999999999999 788889999999984322 22222 34444555444

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.97  E-value=3.5e-07  Score=72.77  Aligned_cols=192  Identities=16%  Similarity=0.114  Sum_probs=128.4

Q ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCC-C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChh--H
Q 018582           89 AADWTTFSNLASIYVEAGLFEKAERALKELENRNAH-R-DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANI--S  164 (353)
Q Consensus        89 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~  164 (353)
                      ......+..+...+.+.|+++.|...|+++....+. | ...++..+..++...|++++|...++++.+..+.....  +
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a  109 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA  109 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence            445667778888889999999999999988775443 1 12466778888899999999999999988765532221  3


Q ss_pred             HHHHHHHHHhc--------CChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHH
Q 018582          165 YLNMIQVLVNL--------KDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWE  236 (353)
Q Consensus       165 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~  236 (353)
                      +..+..++...        |+.+.|.+.++.+....+. +...+..+.....    ...      ...        ....
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~~--------~~~~  170 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN------RLA--------GKEL  170 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HHH--------HHHH
Confidence            44455555544        6677788888887766433 2222222211100    000      000        1112


Q ss_pred             HHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 018582          237 IFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAV  303 (353)
Q Consensus       237 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  303 (353)
                      .+...+.+.|++++|+..++...+....    .......+..+..++.+.|++++|...++.+....
T Consensus       171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~  233 (235)
T TIGR03302       171 YVARFYLKRGAYVAAINRFETVVENYPD----TPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY  233 (235)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHCCC----CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            4556788899999999999999887511    01235788899999999999999999988876644

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.96  E-value=7.9e-06  Score=70.51  Aligned_cols=289  Identities=13%  Similarity=0.152  Sum_probs=183.2

Q ss_pred             hhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCC---cchHHHHHHHHHhcCChhHHHHHHHHHHHcC----------CC
Q 018582           22 MPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPD---SYTYNVWMRALAAVNDISGAERVIEEMKRDG----------RV   88 (353)
Q Consensus        22 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----------~~   88 (353)
                      ..|..+...|-..|+.+.|..+|++..+-..+--   ..+|......=.+..+++.|+++.+......          ..
T Consensus       388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~  467 (835)
T KOG2047|consen  388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE  467 (835)
T ss_pred             hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence            3477778888888888888888888776433222   2345555555566677888888777765421          01


Q ss_pred             CCc------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCh
Q 018582           89 AAD------WTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTAN  162 (353)
Q Consensus        89 ~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  162 (353)
                      ++.      ..+|...++.--..|-++....+++++.+..+. ++...-.....+-...-++++.++|++-...-..|+.
T Consensus       468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v  546 (835)
T KOG2047|consen  468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNV  546 (835)
T ss_pred             cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccH
Confidence            111      223344455555667777888888888765554 3333333333444556677888887765544344544


Q ss_pred             h-HHHHHHHHHHh---cCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHH----hcCChHHHHHHHHHHHhcCCCCC--h
Q 018582          163 I-SYLNMIQVLVN---LKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYA----KEGRLENAEELKERARRRGADPN--A  232 (353)
Q Consensus       163 ~-~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~a~~~~~~~~~~~~~p~--~  232 (353)
                      . .|++.+.-+.+   ..+.+.|..+|++.++.. +|...-  .+--.|+    +.|-...|..+|++.... +++.  .
T Consensus       547 ~diW~tYLtkfi~rygg~klEraRdLFEqaL~~C-pp~~aK--tiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l  622 (835)
T KOG2047|consen  547 YDIWNTYLTKFIKRYGGTKLERARDLFEQALDGC-PPEHAK--TIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRL  622 (835)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcC-CHHHHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHH
Confidence            3 45554444332   347888999999998844 443221  1222233    457788888999886543 4433  2


Q ss_pred             hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHH---HHHHHHHHhcCChhhHHHHHHHHHh-cCCCCCh
Q 018582          233 KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETI---RTFMRHFEQEKDVDGAEGFLEILKK-AVDDLGV  308 (353)
Q Consensus       233 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~  308 (353)
                      ..||..|.--+..=-+.....+|++.++.=        |+...-   -.+...=.+.|..+.|..++....+ .+|+.+.
T Consensus       623 ~myni~I~kaae~yGv~~TR~iYekaIe~L--------p~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~  694 (835)
T KOG2047|consen  623 DMYNIYIKKAAEIYGVPRTREIYEKAIESL--------PDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTT  694 (835)
T ss_pred             HHHHHHHHHHHHHhCCcccHHHHHHHHHhC--------ChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCCh
Confidence            467777765555545566677888887763        665443   3344455789999999999988776 5676788


Q ss_pred             hhhHHHHHHHHHcCC
Q 018582          309 EVFEPLIRTYAAAGR  323 (353)
Q Consensus       309 ~~~~~l~~~~~~~g~  323 (353)
                      ..|.+.=.--.++|+
T Consensus       695 ~fW~twk~FEvrHGn  709 (835)
T KOG2047|consen  695 EFWDTWKEFEVRHGN  709 (835)
T ss_pred             HHHHHHHHHHHhcCC
Confidence            889999888899999

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.93  E-value=6e-07  Score=68.72  Aligned_cols=124  Identities=10%  Similarity=0.059  Sum_probs=70.0

Q ss_pred             cCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHH-HccCC--hHHH
Q 018582          175 LKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYY-LRNGD--MKLA  251 (353)
Q Consensus       175 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~-~~~~~--~~~a  251 (353)
                      .++.+++...++...+..+. |...|..+...|...|++++|...|++..+.... +...+..+..++ ...|+  .++|
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A  129 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT  129 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence            34445555555555554433 5666666666666666666666666666654322 445555555542 44454  3666


Q ss_pred             HHHHHHHHHcCCCCCCCCcc-cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChh
Q 018582          252 VDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVE  309 (353)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  309 (353)
                      .+++++..+.+        | +...+..+...+.+.|++++|...|+++.+..+ |+..
T Consensus       130 ~~~l~~al~~d--------P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~-~~~~  179 (198)
T PRK10370        130 REMIDKALALD--------ANEVTALMLLASDAFMQADYAQAIELWQKVLDLNS-PRVN  179 (198)
T ss_pred             HHHHHHHHHhC--------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcc
Confidence            66666666655        3 345555566666666666666666666666655 4443

>PF12854 PPR_1: PPR repeat

Probab=98.92  E-value=9.6e-10  Score=57.16  Aligned_cols=32  Identities=22%  Similarity=0.391  Sum_probs=20.0

Q ss_pred             CCCCCchhHHHHHHHHHhcCCcchHHHHHHHH
Q 018582           16 NLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEM   47 (353)
Q Consensus        16 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m   47 (353)
                      |++||..+||+||.+|++.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            55566666666666666666666666666655

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.92  E-value=2.2e-06  Score=77.67  Aligned_cols=183  Identities=11%  Similarity=0.003  Sum_probs=126.9

Q ss_pred             CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHH
Q 018582           52 IMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQ  131 (353)
Q Consensus        52 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  131 (353)
                      .+.+...+..|.....+.|..++|..+++...+.  .+-+......+...+.+.+++++|+...++.....+. +.....
T Consensus        82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~  158 (694)
T PRK15179         82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREIL  158 (694)
T ss_pred             ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHH
Confidence            4455777778888888888888888888888885  3445566677888888888888888888888877655 667777


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC
Q 018582          132 FLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEG  211 (353)
Q Consensus       132 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  211 (353)
                      .+..++.+.|++++|..+|+++...++ -+..++..+..++...|+.++|...|+...+.. .+....|+..+      +
T Consensus       159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~  230 (694)
T PRK15179        159 LEAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------V  230 (694)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------H
Confidence            788888888888888888888877443 246677888888888888888888888877653 33445555433      3


Q ss_pred             ChHHHHHHHHHHHhc----CCCCChhhHHHHHHHHHcc
Q 018582          212 RLENAEELKERARRR----GADPNAKTWEIFSDYYLRN  245 (353)
Q Consensus       212 ~~~~a~~~~~~~~~~----~~~p~~~~~~~li~~~~~~  245 (353)
                      ++..-..+++++.-.    |..........+|.-+.+.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (694)
T PRK15179        231 DLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR  268 (694)
T ss_pred             HHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence            344445556655432    2222334455555555543

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.90  E-value=4.9e-07  Score=78.68  Aligned_cols=216  Identities=15%  Similarity=0.143  Sum_probs=175.8

Q ss_pred             HHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHh
Q 018582           25 NSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVE  104 (353)
Q Consensus        25 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  104 (353)
                      -.+...+...|-...|+.+|+++.         .|.-++.+|...|+..+|..+..+-.+   .+|+...|..+.+....
T Consensus       402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le---k~~d~~lyc~LGDv~~d  469 (777)
T KOG1128|consen  402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE---KDPDPRLYCLLGDVLHD  469 (777)
T ss_pred             HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc---CCCcchhHHHhhhhccC
Confidence            455677888888899999888764         366788899999999999999888877   47999999999998888


Q ss_pred             cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHH
Q 018582          105 AGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKC  184 (353)
Q Consensus       105 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  184 (353)
                      ..-+++|.++.+....+       +-..+.....+.++++++.+.|+.-.+..+ .-..+|-....+..+.+++..|.+.
T Consensus       470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q~av~a  541 (777)
T KOG1128|consen  470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQAAVKA  541 (777)
T ss_pred             hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhHHHHHH
Confidence            87889999988875432       223333334557999999999998766544 3556888888888999999999999


Q ss_pred             HHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582          185 FKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG  262 (353)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  262 (353)
                      |.......+. +...||.+-.+|.+.|+-.+|...+.+..+.+.. +...|...+....+.|.+++|++.+.++....
T Consensus       542 F~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~~~  617 (777)
T KOG1128|consen  542 FHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR  617 (777)
T ss_pred             HHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence            9999887644 7889999999999999999999999999987633 55677777778889999999999999988764

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.90  E-value=7.5e-07  Score=69.51  Aligned_cols=279  Identities=12%  Similarity=0.046  Sum_probs=142.9

Q ss_pred             ChHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHH-HHHHHHhcCChhHHHHHH
Q 018582            1 MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNV-WMRALAAVNDISGAERVI   79 (353)
Q Consensus         1 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~~~~~a~~~~   79 (353)
                      |++.|++++..-.++.. .+....+.|..+|-...++..|-+.|+++-..  .|...-|.. -...+-+.+.+..|+++.
T Consensus        25 ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADALrV~  101 (459)
T KOG4340|consen   25 RYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADALRVA  101 (459)
T ss_pred             hHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence            34566666666666552 35556666666777777777777777776553  355444433 234455666677777776


Q ss_pred             HHHHHcCCCCCcHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhC
Q 018582           80 EEMKRDGRVAADWTTFSNLAS--IYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAF  157 (353)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  157 (353)
                      ..|...    ++...-..-+.  ..-..+++..+..++++....|   +..+.+...-...+.|++++|.+-|+...+-+
T Consensus       102 ~~~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvs  174 (459)
T KOG4340|consen  102 FLLLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVS  174 (459)
T ss_pred             HHhcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhc
Confidence            655432    22221111122  2224566666666666654321   33344444444556777777777777665543


Q ss_pred             CCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHH---------------------HHHHHHH-------HHHh
Q 018582          158 PNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIR---------------------VTNVMIG-------AYAK  209 (353)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------------------~~~~li~-------~~~~  209 (353)
                      --.....|+..+. ..+.++.+.|.+...++...|+.-.+.                     .-+.++.       .+.+
T Consensus       175 GyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq  253 (459)
T KOG4340|consen  175 GYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQ  253 (459)
T ss_pred             CCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhh
Confidence            2233455654443 335566777777777776665442110                     1122222       2234


Q ss_pred             cCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHH-ccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCC
Q 018582          210 EGRLENAEELKERARRRGADPNAKTWEIFSDYYL-RNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKD  288 (353)
Q Consensus       210 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  288 (353)
                      .|+++.|.+-+..|.-+. ..+....+.--.+.. ..+++-...+-+.-++..+.       -...|+..++-.|++..-
T Consensus       254 ~~n~eAA~eaLtDmPPRa-E~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nP-------fP~ETFANlLllyCKNey  325 (459)
T KOG4340|consen  254 LRNYEAAQEALTDMPPRA-EEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNP-------FPPETFANLLLLYCKNEY  325 (459)
T ss_pred             cccHHHHHHHhhcCCCcc-cccCCchhhhHHHHhcccCCccccHHHHHHHHhcCC-------CChHHHHHHHHHHhhhHH
Confidence            455555555555543221 112222211111222 23345555555555555431       234566666667777666


Q ss_pred             hhhHHHHHHH
Q 018582          289 VDGAEGFLEI  298 (353)
Q Consensus       289 ~~~a~~~~~~  298 (353)
                      ++.|-.++.+
T Consensus       326 f~lAADvLAE  335 (459)
T KOG4340|consen  326 FDLAADVLAE  335 (459)
T ss_pred             HhHHHHHHhh
Confidence            6766666654

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.89  E-value=1.3e-06  Score=66.81  Aligned_cols=120  Identities=11%  Similarity=0.121  Sum_probs=78.4

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHH-HHhcCC--hHHH
Q 018582          140 TGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGA-YAKEGR--LENA  216 (353)
Q Consensus       140 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~--~~~a  216 (353)
                      .++.+++...++......+ .+...|..+...|...|++++|...|++..+..+. +...+..+..+ +...|+  .++|
T Consensus        52 ~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A  129 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT  129 (198)
T ss_pred             chhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence            4555666666666555544 35666777777777777777777777777766543 66666666665 355555  4677


Q ss_pred             HHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582          217 EELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG  262 (353)
Q Consensus       217 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  262 (353)
                      .+++++..+.+.. +...+..+...+...|++++|+..|+++.+..
T Consensus       130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~  174 (198)
T PRK10370        130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN  174 (198)
T ss_pred             HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            7777777766433 55666667777777777777777777777664

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=1.7e-05  Score=66.96  Aligned_cols=311  Identities=14%  Similarity=0.036  Sum_probs=175.2

Q ss_pred             hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCC-cchHHHHHHHHHhcCChhHHHHHHH
Q 018582            2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPD-SYTYNVWMRALAAVNDISGAERVIE   80 (353)
Q Consensus         2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~   80 (353)
                      ++.|+..|..-..... ++...|+.=..+|...|++++|++=-.+-++  +.|+ ...|.....++.-.|++++|...|.
T Consensus        18 ~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~   94 (539)
T KOG0548|consen   18 FETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEEAILAYS   94 (539)
T ss_pred             HHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHHHHHHHH
Confidence            5678888888887775 4777888888899999999988876665555  4566 4578888888888999999999999


Q ss_pred             HHHHcCCCCCcHHHHHHHHHHHHhcCCHH------------------------HH------------------------H
Q 018582           81 EMKRDGRVAADWTTFSNLASIYVEAGLFE------------------------KA------------------------E  112 (353)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------------------------~a------------------------~  112 (353)
                      +-.+.  .+.|...++.+..++.......                        .+                        .
T Consensus        95 ~GL~~--d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m  172 (539)
T KOG0548|consen   95 EGLEK--DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLM  172 (539)
T ss_pred             HHhhc--CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHH
Confidence            88886  4666666666766662110000                        00                        0


Q ss_pred             HHHHHHHH--------cc-------CCC------------C----------HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 018582          113 RALKELEN--------RN-------AHR------------D----------LSAYQFLITLYGQTGNLSEVYRIWRSLRL  155 (353)
Q Consensus       113 ~~~~~~~~--------~~-------~~~------------~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  155 (353)
                      .....+..        .+       ..|            |          ......+.++..+..+++.|++-+.....
T Consensus       173 ~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~e  252 (539)
T KOG0548|consen  173 KADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALE  252 (539)
T ss_pred             HHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            00000000        00       000            0          01123344444455555555555555544


Q ss_pred             hCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHH-------HHHHHHhcCChHHHHHHHHHHHhcCC
Q 018582          156 AFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNV-------MIGAYAKEGRLENAEELKERARRRGA  228 (353)
Q Consensus       156 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------li~~~~~~g~~~~a~~~~~~~~~~~~  228 (353)
                      ..  -+..-++....+|...|.+..+...-....+.|-. ...-|+.       +..+|.+.++++.+...|.+......
T Consensus       253 l~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~R  329 (539)
T KOG0548|consen  253 LA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHR  329 (539)
T ss_pred             Hh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhc
Confidence            33  23333444555566666555555444444433321 2222222       22344455666677777666554433


Q ss_pred             CCChhhH-------------------------HHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHH
Q 018582          229 DPNAKTW-------------------------EIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHF  283 (353)
Q Consensus       229 ~p~~~~~-------------------------~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  283 (353)
                      .|+..+-                         ..-...+.+.|++..|++.|.++++..       +-|...|+...-+|
T Consensus       330 t~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-------P~Da~lYsNRAac~  402 (539)
T KOG0548|consen  330 TPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-------PEDARLYSNRAACY  402 (539)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-------CchhHHHHHHHHHH
Confidence            3332221                         011233456677777777777777765       13466677777777


Q ss_pred             HhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChHHH
Q 018582          284 EQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVM  328 (353)
Q Consensus       284 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~  328 (353)
                      .+.|.+..|.+-.+...+.++ +....|..-..++....+++.++
T Consensus       403 ~kL~~~~~aL~Da~~~ieL~p-~~~kgy~RKg~al~~mk~ydkAl  446 (539)
T KOG0548|consen  403 LKLGEYPEALKDAKKCIELDP-NFIKAYLRKGAALRAMKEYDKAL  446 (539)
T ss_pred             HHHhhHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777777777777766666 55555554444444444444433

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.88  E-value=4.9e-06  Score=76.44  Aligned_cols=222  Identities=10%  Similarity=0.125  Sum_probs=121.0

Q ss_pred             CCCC-CchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcc-hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcH-
Q 018582           16 NLGF-SSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSY-TYNVWMRALAAVNDISGAERVIEEMKRDGRVAADW-   92 (353)
Q Consensus        16 ~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-   92 (353)
                      ++.| +...|..|+..+...+++++|.++.+...+.  .|+.. .|-.+...+.+.++...+..+  .+...  ...+. 
T Consensus        25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~--~~~~~~   98 (906)
T PRK14720         25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLIDS--FSQNLK   98 (906)
T ss_pred             cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh--cccccc
Confidence            3434 4678999999999999999999999977764  45544 444444466666666555544  22221  11111 


Q ss_pred             ------------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 018582           93 ------------------TTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLR  154 (353)
Q Consensus        93 ------------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  154 (353)
                                        ..+..+..+|-+.|+.++|..+++++.+..+. ++.+.|.+...|... +.++|.+++.+..
T Consensus        99 ~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV  176 (906)
T PRK14720         99 WAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAI  176 (906)
T ss_pred             hhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence                              33344444455555555555555555544432 444555555555544 5555555544433


Q ss_pred             HhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCChh
Q 018582          155 LAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRR-GADPNAK  233 (353)
Q Consensus       155 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~  233 (353)
                      ..               +...+++..+.++|.++....+.                 +.+.-.++.+.+... |..--..
T Consensus       177 ~~---------------~i~~kq~~~~~e~W~k~~~~~~~-----------------d~d~f~~i~~ki~~~~~~~~~~~  224 (906)
T PRK14720        177 YR---------------FIKKKQYVGIEEIWSKLVHYNSD-----------------DFDFFLRIERKVLGHREFTRLVG  224 (906)
T ss_pred             HH---------------HHhhhcchHHHHHHHHHHhcCcc-----------------cchHHHHHHHHHHhhhccchhHH
Confidence            22               22333444444444444433221                 222222333333322 2222344


Q ss_pred             hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHH
Q 018582          234 TWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFE  284 (353)
Q Consensus       234 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  284 (353)
                      ++-.+...|...++|+++.++++.+++...       -|.....-++.+|.
T Consensus       225 ~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~-------~n~~a~~~l~~~y~  268 (906)
T PRK14720        225 LLEDLYEPYKALEDWDEVIYILKKILEHDN-------KNNKAREELIRFYK  268 (906)
T ss_pred             HHHHHHHHHhhhhhhhHHHHHHHHHHhcCC-------cchhhHHHHHHHHH
Confidence            555566677778888888888888888751       34566666666665

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.88  E-value=3.8e-06  Score=76.19  Aligned_cols=147  Identities=14%  Similarity=0.206  Sum_probs=108.0

Q ss_pred             CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHH
Q 018582          124 HRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVM  203 (353)
Q Consensus       124 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  203 (353)
                      ..++.++..|.....+.|.+++|..+++...+..+. +......+...+.+.+++++|...+++.....+. +......+
T Consensus        83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~  160 (694)
T PRK15179         83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE  160 (694)
T ss_pred             cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence            346777888888888888888888888887775432 4446667777888888888888888888877644 67777777


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHH
Q 018582          204 IGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFM  280 (353)
Q Consensus       204 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  280 (353)
                      ..++...|++++|..+|+++...+. -+..++..+...+-..|+.++|...|+...+..       .|....|+.++
T Consensus       161 a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-------~~~~~~~~~~~  229 (694)
T PRK15179        161 AKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-------GDGARKLTRRL  229 (694)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-------CcchHHHHHHH
Confidence            7888888888888888888877432 246777777888888888888888888877762       15555555544

>PF12854 PPR_1: PPR repeat

Probab=98.88  E-value=3.6e-09  Score=55.00  Aligned_cols=31  Identities=32%  Similarity=0.493  Sum_probs=13.7

Q ss_pred             CCCcHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018582          193 ATYDIRVTNVMIGAYAKEGRLENAEELKERA  223 (353)
Q Consensus       193 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  223 (353)
                      +.||..+|++||.+|++.|++++|.++|++|
T Consensus         3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            3444444444444444444444444444443

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.86  E-value=4.3e-06  Score=73.08  Aligned_cols=232  Identities=15%  Similarity=0.115  Sum_probs=169.0

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHc
Q 018582           60 NVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQ  139 (353)
Q Consensus        60 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  139 (353)
                      ..+...+.+.|-..+|..+|+++..          +..++.+|...|+..+|..+..+..+  -+||+..|..+.+....
T Consensus       402 ~~laell~slGitksAl~I~Erlem----------w~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d  469 (777)
T KOG1128|consen  402 RLLAELLLSLGITKSALVIFERLEM----------WDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHD  469 (777)
T ss_pred             HHHHHHHHHcchHHHHHHHHHhHHH----------HHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccC
Confidence            4456677778888888888887654          33578888888888888888887766  35688888888887777


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHH
Q 018582          140 TGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEEL  219 (353)
Q Consensus       140 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  219 (353)
                      .--+++|.++.+.....       .-..+.....+.++++++.+.|+.-.+.. +....+|-.+..+..+.++++.|.+.
T Consensus       470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~a  541 (777)
T KOG1128|consen  470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKA  541 (777)
T ss_pred             hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHH
Confidence            77788888888764322       11122222334688888988888877655 33667888888888899999999999


Q ss_pred             HHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 018582          220 KERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEIL  299 (353)
Q Consensus       220 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  299 (353)
                      |..-.... +-+...||.+-.+|.+.++-.+|...+.+..+.+.       -+..+|...+....+.|.+++|.+.+.++
T Consensus       542 F~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-------~~w~iWENymlvsvdvge~eda~~A~~rl  613 (777)
T KOG1128|consen  542 FHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-------QHWQIWENYMLVSVDVGEFEDAIKAYHRL  613 (777)
T ss_pred             HHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-------CCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence            98877652 22567899999999999999999999999988862       34566777777788899999999998887


Q ss_pred             HhcCCC-CChhhhHHHHHHHH
Q 018582          300 KKAVDD-LGVEVFEPLIRTYA  319 (353)
Q Consensus       300 ~~~~~~-~~~~~~~~l~~~~~  319 (353)
                      ...... .+..+...++....
T Consensus       614 l~~~~~~~d~~vl~~iv~~~~  634 (777)
T KOG1128|consen  614 LDLRKKYKDDEVLLIIVRTVL  634 (777)
T ss_pred             HHhhhhcccchhhHHHHHHHH
Confidence            763211 24444444444443

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.86  E-value=2.6e-05  Score=66.06  Aligned_cols=121  Identities=15%  Similarity=0.196  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHH
Q 018582          198 RVTNVMIGAYAKEGRLENAEELKERARRRGADP-NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETI  276 (353)
Q Consensus       198 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  276 (353)
                      -+|...++.-.+...++.|..+|.+..+.+..+ ++...++++.-++. ++.+.|.++|+--++.-       ..++.-.
T Consensus       367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf-------~d~p~yv  438 (656)
T KOG1914|consen  367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKF-------GDSPEYV  438 (656)
T ss_pred             eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhc-------CCChHHH
Confidence            466777787788888899999999999887777 66777888887765 67888999998876663       1345555


Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHHhcCCC--CChhhhHHHHHHHHHcCCChH
Q 018582          277 RTFMRHFEQEKDVDGAEGFLEILKKAVDD--LGVEVFEPLIRTYAAAGRTSP  326 (353)
Q Consensus       277 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~  326 (353)
                      ...+.-+...++-..+..+|+++......  .....|..++.--+.-|+.+.
T Consensus       439 ~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s  490 (656)
T KOG1914|consen  439 LKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS  490 (656)
T ss_pred             HHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence            67777888889999999999999887442  345789999988888888443

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.85  E-value=1.1e-05  Score=68.03  Aligned_cols=307  Identities=16%  Similarity=0.136  Sum_probs=207.9

Q ss_pred             HHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcH-HHHHHHHHHHHhcCC
Q 018582           29 TLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADW-TTFSNLASIYVEAGL  107 (353)
Q Consensus        29 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~  107 (353)
                      ++.+..|+++.|+.+|.+..... ++|...|..-..+++..|++++|.+=-.+-++   ..|++ .-|+....++.-.|+
T Consensus        10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~---l~p~w~kgy~r~Gaa~~~lg~   85 (539)
T KOG0548|consen   10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRR---LNPDWAKGYSRKGAALFGLGD   85 (539)
T ss_pred             HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHh---cCCchhhHHHHhHHHHHhccc
Confidence            45677899999999999998864 56888899999999999999999988877777   45665 578899999999999


Q ss_pred             HHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcc----------------------------C------------------
Q 018582          108 FEKAERALKELENRNAHRDLSAYQFLITLYGQT----------------------------G------------------  141 (353)
Q Consensus       108 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------------------~------------------  141 (353)
                      +++|+..|.+-.+..+. +...++-+.+++...                            .                  
T Consensus        86 ~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~  164 (539)
T KOG0548|consen   86 YEEAILAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL  164 (539)
T ss_pred             HHHHHHHHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence            99999999987665433 444444444443110                            0                  


Q ss_pred             --CHHHHHHHHHHHH--------Hh-------CCCC---------C-------------hhHHHHHHHHHHhcCChhHHH
Q 018582          142 --NLSEVYRIWRSLR--------LA-------FPNT---------A-------------NISYLNMIQVLVNLKDLPGAE  182 (353)
Q Consensus       142 --~~~~a~~~~~~~~--------~~-------~~~~---------~-------------~~~~~~l~~~~~~~~~~~~a~  182 (353)
                        +.+......-.+.        ..       ...|         .             ..-...+.++..+..+++.+.
T Consensus       165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~  244 (539)
T KOG0548|consen  165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI  244 (539)
T ss_pred             ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence              0000000000000        00       0001         0             012334556666677788888


Q ss_pred             HHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHH-------HHHHHHccCChHHHHHHH
Q 018582          183 KCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEI-------FSDYYLRNGDMKLAVDCL  255 (353)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~-------li~~~~~~~~~~~a~~~~  255 (353)
                      +.+.......  -+..-++....+|...|.+.+....-....+.|-. ...-|+.       +..+|.+.++++.++.+|
T Consensus       245 q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~  321 (539)
T KOG0548|consen  245 QHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYY  321 (539)
T ss_pred             HHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence            8888877665  36666777778888888888777766665555422 1222322       334666778899999999


Q ss_pred             HHHHHcCCCCCCC------------------CcccH-HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHH
Q 018582          256 EKAIDTGRGDGGK------------------WVPSS-ETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIR  316 (353)
Q Consensus       256 ~~~~~~~~~~~~~------------------~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  316 (353)
                      .+.+.....|+..                  +.|.. .-...=...+.+.|++..|.+.|.+++..+| .|...|.....
T Consensus       322 ~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P-~Da~lYsNRAa  400 (539)
T KOG0548|consen  322 QKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDP-EDARLYSNRAA  400 (539)
T ss_pred             HHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC-chhHHHHHHHH
Confidence            9988776543211                  12221 1111223457789999999999999999998 99999999999


Q ss_pred             HHHHcCCChHHHHHHHHhCCCccCHhHH
Q 018582          317 TYAAAGRTSPVMLRRLKMEKVEVSEASK  344 (353)
Q Consensus       317 ~~~~~g~~~~~~~~~m~~~~~~p~~~~~  344 (353)
                      +|.+.|....++-+.-....+.|+...-
T Consensus       401 c~~kL~~~~~aL~Da~~~ieL~p~~~kg  428 (539)
T KOG0548|consen  401 CYLKLGEYPEALKDAKKCIELDPNFIKA  428 (539)
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCchHHHH
Confidence            9999999888887666666666765543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.84  E-value=1.9e-06  Score=66.17  Aligned_cols=158  Identities=15%  Similarity=0.074  Sum_probs=95.8

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc
Q 018582          131 QFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKE  210 (353)
Q Consensus       131 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  210 (353)
                      ..+-..+...|+-+....+........+ .|.......+....+.|++..|...+++..... ++|...|+.+.-+|.+.
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~-~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~  147 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAYP-KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL  147 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccCc-ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence            4444555556666665555554433222 233344446666666777777777777766655 34667777777777777


Q ss_pred             CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChh
Q 018582          211 GRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVD  290 (353)
Q Consensus       211 g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  290 (353)
                      |+.++|..-|.+..+... -+...++.+.-.+.-.|+.+.|..++......+.       -+..+-..+.......|+++
T Consensus       148 Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-------ad~~v~~NLAl~~~~~g~~~  219 (257)
T COG5010         148 GRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-------ADSRVRQNLALVVGLQGDFR  219 (257)
T ss_pred             cChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-------CchHHHHHHHHHHhhcCChH
Confidence            777777777776665422 2445566666666666777777777776666541       25556666666666677777


Q ss_pred             hHHHHHHH
Q 018582          291 GAEGFLEI  298 (353)
Q Consensus       291 ~a~~~~~~  298 (353)
                      .|..+...
T Consensus       220 ~A~~i~~~  227 (257)
T COG5010         220 EAEDIAVQ  227 (257)
T ss_pred             HHHhhccc
Confidence            77665543

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.83  E-value=1.9e-05  Score=63.49  Aligned_cols=77  Identities=13%  Similarity=-0.049  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 018582            3 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIE   80 (353)
Q Consensus         3 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~   80 (353)
                      ..|+.+++--...+-.-...+--.+..++.+.|++++|+..|..+.+.. .|+...+..+.-+..-.|.+.+|..+-.
T Consensus        39 tGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~  115 (557)
T KOG3785|consen   39 TGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAE  115 (557)
T ss_pred             hhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHh
Confidence            4566666655543321222233345566778899999999998887753 5666666666666666677777766544

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.83  E-value=3.4e-06  Score=64.77  Aligned_cols=164  Identities=17%  Similarity=0.110  Sum_probs=122.7

Q ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHH
Q 018582           89 AADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNM  168 (353)
Q Consensus        89 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  168 (353)
                      +-|..+ ..+-..+...|+-+.+..+........+ .|......++....+.|++..|+..+++.....+ +|...|+.+
T Consensus        64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~-~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~l  140 (257)
T COG5010          64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYP-KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNLL  140 (257)
T ss_pred             cchHHH-HHHHHHHHhcccccchHHHHhhhhccCc-ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhHH
Confidence            334444 5566777777888888777777654322 3555666688888888888888888888776644 678888888


Q ss_pred             HHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCh
Q 018582          169 IQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDM  248 (353)
Q Consensus       169 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~  248 (353)
                      .-+|.+.|+++.|..-|.+..+..+. +....|.+.-.|.-.|+.+.|..++......+.. |...-..+.......|++
T Consensus       141 gaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~  218 (257)
T COG5010         141 GAALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDF  218 (257)
T ss_pred             HHHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCCh
Confidence            88888888888888888888876544 6667777888888888888888888887766432 666777777788888888


Q ss_pred             HHHHHHHHH
Q 018582          249 KLAVDCLEK  257 (353)
Q Consensus       249 ~~a~~~~~~  257 (353)
                      +.|.++...
T Consensus       219 ~~A~~i~~~  227 (257)
T COG5010         219 REAEDIAVQ  227 (257)
T ss_pred             HHHHhhccc
Confidence            888877644

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.83  E-value=2.8e-05  Score=74.75  Aligned_cols=298  Identities=15%  Similarity=0.049  Sum_probs=183.1

Q ss_pred             HHHHHHHHhcCCcchHHHHHHHHHHCC--C----CCCcc--hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc----H
Q 018582           25 NSLMTLYAKTGHPEKIPAIIQEMKASS--I----MPDSY--TYNVWMRALAAVNDISGAERVIEEMKRDGRVAAD----W   92 (353)
Q Consensus        25 ~~ll~~~~~~~~~~~a~~~~~~m~~~~--~----~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~   92 (353)
                      ......+...|++++|...+......-  .    .+...  ....+...+...|++++|...++.....- ...+    .
T Consensus       413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~  491 (903)
T PRK04841        413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAEL-PLTWYYSRI  491 (903)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCccHHHHH
Confidence            444555667889999999888775431  0    01111  12223345567899999999999887631 1112    1


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHccCC-----CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHh----CCC--C-
Q 018582           93 TTFSNLASIYVEAGLFEKAERALKELENRNAH-----RDLSAYQFLITLYGQTGNLSEVYRIWRSLRLA----FPN--T-  160 (353)
Q Consensus        93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-  160 (353)
                      ...+.+...+...|++++|...+++.......     ....++..+...+...|++++|...+++....    +..  + 
T Consensus       492 ~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~  571 (903)
T PRK04841        492 VATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPM  571 (903)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccH
Confidence            23456667778899999999998887542111     11234556677788899999999998876542    211  1 


Q ss_pred             ChhHHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-CChhhH
Q 018582          161 ANISYLNMIQVLVNLKDLPGAEKCFKEWESG----CATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGAD-PNAKTW  235 (353)
Q Consensus       161 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~  235 (353)
                      ....+..+...+...|++++|...+.+....    +.......+..+...+...|++++|.+.+.+....... .....+
T Consensus       572 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~  651 (903)
T PRK04841        572 HEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDW  651 (903)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhH
Confidence            1223445556677789999999988886542    21112344555667788899999999998887542111 011111


Q ss_pred             -----HHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhc----CCCC
Q 018582          236 -----EIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKA----VDDL  306 (353)
Q Consensus       236 -----~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~  306 (353)
                           ...+..+...|+.+.|.+.+.........  . .......+..+..++...|+.++|...+++....    +...
T Consensus       652 ~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~--~-~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~  728 (903)
T PRK04841        652 IANADKVRLIYWQMTGDKEAAANWLRQAPKPEFA--N-NHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMS  728 (903)
T ss_pred             hhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCc--c-chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchH
Confidence                 11224445578888888887765442210  0 0001122455667788899999999998887663    2211


Q ss_pred             -ChhhhHHHHHHHHHcCCChH
Q 018582          307 -GVEVFEPLIRTYAAAGRTSP  326 (353)
Q Consensus       307 -~~~~~~~l~~~~~~~g~~~~  326 (353)
                       ...+...+..++.+.|+..+
T Consensus       729 ~~a~~~~~la~a~~~~G~~~~  749 (903)
T PRK04841        729 DLNRNLILLNQLYWQQGRKSE  749 (903)
T ss_pred             HHHHHHHHHHHHHHHcCCHHH
Confidence             23466777888888898443

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.82  E-value=5.9e-05  Score=65.35  Aligned_cols=308  Identities=14%  Similarity=0.143  Sum_probs=191.6

Q ss_pred             hhHHHHHHHHHhcCCcchHHHHHHHHHHC-CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q 018582           22 MPFNSLMTLYAKTGHPEKIPAIIQEMKAS-SIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLAS  100 (353)
Q Consensus        22 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  100 (353)
                      ..|-.-+....++|+......+|+..... -+......|...+.-....+-++.+..+|++..+   +.|..  -+--+.
T Consensus       103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk---~~P~~--~eeyie  177 (835)
T KOG2047|consen  103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK---VAPEA--REEYIE  177 (835)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh---cCHHH--HHHHHH
Confidence            45666677778888888888888887764 2334456788888888888889999999999987   34544  567888


Q ss_pred             HHHhcCCHHHHHHHHHHHHHc------cCCCCHHHHHHHHHHHHccCCHHH---HHHHHHHHHHhCCCCChhHHHHHHHH
Q 018582          101 IYVEAGLFEKAERALKELENR------NAHRDLSAYQFLITLYGQTGNLSE---VYRIWRSLRLAFPNTANISYLNMIQV  171 (353)
Q Consensus       101 ~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~  171 (353)
                      .+++.+++++|-+.+......      ..+.+...|..+-+...+..+.-.   ...+++.+...-...-...|++|.+.
T Consensus       178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY  257 (835)
T KOG2047|consen  178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY  257 (835)
T ss_pred             HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence            999999999999998877432      122355566666666555443322   23334433332222223478999999


Q ss_pred             HHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC----------------------hHHHHHHHHHHHhcCC-
Q 018582          172 LVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGR----------------------LENAEELKERARRRGA-  228 (353)
Q Consensus       172 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------------------~~~a~~~~~~~~~~~~-  228 (353)
                      |.+.|.+++|..+|++....-  ..+.-|+.+.++|.....                      ++-...-|+.+...+. 
T Consensus       258 YIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~  335 (835)
T KOG2047|consen  258 YIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL  335 (835)
T ss_pred             HHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence            999999999999999977542  245556666666654321                      1122223333332210 


Q ss_pred             ----------CCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHH
Q 018582          229 ----------DPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEI  298 (353)
Q Consensus       229 ----------~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  298 (353)
                                +-++..|..-+.  ...|+..+-...+.++.+. +.|....-.-...|..+...|...|+.+.|..+|++
T Consensus       336 ~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifek  412 (835)
T KOG2047|consen  336 LLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEK  412 (835)
T ss_pred             HHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHH
Confidence                      012222222221  2346777888888888876 222211111245789999999999999999999999


Q ss_pred             HHhcCCCCCh----hhhHHHHHHHHHcCCChHHHHHHHHhCCCccCH
Q 018582          299 LKKAVDDLGV----EVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSE  341 (353)
Q Consensus       299 ~~~~~~~~~~----~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~  341 (353)
                      ..+... +..    .+|-.....-.++.+ .++.+..|+..-..|..
T Consensus       413 a~~V~y-~~v~dLa~vw~~waemElrh~~-~~~Al~lm~~A~~vP~~  457 (835)
T KOG2047|consen  413 ATKVPY-KTVEDLAEVWCAWAEMELRHEN-FEAALKLMRRATHVPTN  457 (835)
T ss_pred             hhcCCc-cchHHHHHHHHHHHHHHHhhhh-HHHHHHHHHhhhcCCCc
Confidence            887655 333    223333322233222 33445566666555554

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.81  E-value=2.3e-05  Score=75.30  Aligned_cols=275  Identities=12%  Similarity=0.048  Sum_probs=178.9

Q ss_pred             HHHHHhcCCcchHHHHHHHHHHCCCCCCc----chHHHHHHHHHhcCChhHHHHHHHHHHHcC----CCCCcHHHHHHHH
Q 018582           28 MTLYAKTGHPEKIPAIIQEMKASSIMPDS----YTYNVWMRALAAVNDISGAERVIEEMKRDG----RVAADWTTFSNLA   99 (353)
Q Consensus        28 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~l~   99 (353)
                      ...+...|++++|...++.....--..+.    ...+.+...+...|++++|...+++.....    .......++..+.
T Consensus       459 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la  538 (903)
T PRK04841        459 AQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQS  538 (903)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence            34566799999999999988763111111    234555666778999999999998877531    0111223456677


Q ss_pred             HHHHhcCCHHHHHHHHHHHHH----ccCC--C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhC--CCC--ChhHHHHH
Q 018582          100 SIYVEAGLFEKAERALKELEN----RNAH--R-DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAF--PNT--ANISYLNM  168 (353)
Q Consensus       100 ~~~~~~~~~~~a~~~~~~~~~----~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l  168 (353)
                      ..+...|+++.|...+++...    .+..  + ....+..+...+...|++++|...+.+.....  ..+  ....+..+
T Consensus       539 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l  618 (903)
T PRK04841        539 EILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAML  618 (903)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHH
Confidence            788899999999999887644    2211  1 22334556667778899999999998865431  112  22345556


Q ss_pred             HHHHHhcCChhHHHHHHHHHHhcCCCC-cHHHH-----HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCh---hhHHHHH
Q 018582          169 IQVLVNLKDLPGAEKCFKEWESGCATY-DIRVT-----NVMIGAYAKEGRLENAEELKERARRRGADPNA---KTWEIFS  239 (353)
Q Consensus       169 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~li  239 (353)
                      ...+...|+.+.|...+.......... ....+     ...+..+...|+.+.|...+............   ..+..+.
T Consensus       619 a~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a  698 (903)
T PRK04841        619 AKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIA  698 (903)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHH
Confidence            677888999999999998875421110 11111     11224455688999999998775542111111   1134566


Q ss_pred             HHHHccCChHHHHHHHHHHHHcCCCCCCCCcc-cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 018582          240 DYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD  304 (353)
Q Consensus       240 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  304 (353)
                      .++...|++++|...++......... + ..+ ...+...+..++.+.|+.++|...+.+..+...
T Consensus       699 ~~~~~~g~~~~A~~~l~~al~~~~~~-g-~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~  762 (903)
T PRK04841        699 RAQILLGQFDEAEIILEELNENARSL-R-LMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN  762 (903)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHh-C-chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence            77889999999999999887652100 0 112 234566777788999999999999999887554

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.79  E-value=2.4e-05  Score=60.30  Aligned_cols=251  Identities=16%  Similarity=0.101  Sum_probs=156.0

Q ss_pred             HHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHH
Q 018582           30 LYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFE  109 (353)
Q Consensus        30 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  109 (353)
                      -+.-.|++..++..-......  +-+...-..+-++|...|+......   ++.. | -.|.......+......-++.+
T Consensus        17 n~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~-~-~~~~lqAvr~~a~~~~~e~~~~   89 (299)
T KOG3081|consen   17 NYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKE-G-KATPLQAVRLLAEYLELESNKK   89 (299)
T ss_pred             HHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cccc-c-cCChHHHHHHHHHHhhCcchhH
Confidence            344456666666554433322  2333344445566776666543332   2222 2 2333444444444444444444


Q ss_pred             HHH-HHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 018582          110 KAE-RALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEW  188 (353)
Q Consensus       110 ~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  188 (353)
                      .-+ ++.+.+.......+......-...|++.|++++|++..+..      -+......=+..+.+..+.+-|.+.+++|
T Consensus        90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~m  163 (299)
T KOG3081|consen   90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKM  163 (299)
T ss_pred             HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            433 33444444444434344444456788899999998887752      23344444456667788888999999998


Q ss_pred             HhcCCCCcHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCC
Q 018582          189 ESGCATYDIRVTNVMIGAYAK----EGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRG  264 (353)
Q Consensus       189 ~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~  264 (353)
                      .+..   +..+.+.|..++.+    .+.+.+|.-+|++|.++ ..|+..+.+....++...|++++|..+++..+.... 
T Consensus       164 q~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-  238 (299)
T KOG3081|consen  164 QQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-  238 (299)
T ss_pred             Hccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-
Confidence            8754   55666767766665    35688899999998875 577888888888888899999999999999888752 


Q ss_pred             CCCCCcccHHHHHHHHHHHHhcCChhh-HHHHHHHHHhcCC
Q 018582          265 DGGKWVPSSETIRTFMRHFEQEKDVDG-AEGFLEILKKAVD  304 (353)
Q Consensus       265 ~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~  304 (353)
                            -++.+...++.+-...|...+ -.+.+.+++...+
T Consensus       239 ------~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p  273 (299)
T KOG3081|consen  239 ------KDPETLANLIVLALHLGKDAEVTERNLSQLKLSHP  273 (299)
T ss_pred             ------CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Confidence                  456777777776666665544 4456666666554

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.77  E-value=8.3e-07  Score=64.28  Aligned_cols=109  Identities=11%  Similarity=-0.022  Sum_probs=69.0

Q ss_pred             HHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 018582           42 AIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENR  121 (353)
Q Consensus        42 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  121 (353)
                      .+|++..+.  .|+.  +......+...|++++|...|+.....  .+.+...+..+..++.+.|++++|...|+.....
T Consensus        14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l   87 (144)
T PRK15359         14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML   87 (144)
T ss_pred             HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            444444442  2332  444555666677777777777776665  4556666667777777777777777777777665


Q ss_pred             cCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhC
Q 018582          122 NAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAF  157 (353)
Q Consensus       122 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  157 (353)
                      .+. +..++..+..++...|++++|...|+......
T Consensus        88 ~p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~  122 (144)
T PRK15359         88 DAS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS  122 (144)
T ss_pred             CCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            443 56666666677777777777777777666543

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.77  E-value=1.8e-05  Score=61.04  Aligned_cols=241  Identities=14%  Similarity=0.128  Sum_probs=165.7

Q ss_pred             HHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCH
Q 018582           64 RALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNL  143 (353)
Q Consensus        64 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  143 (353)
                      +-+.-.|++..++..-......   +.+...-..+.++|...|++....   .++.... .|...+...+......-++.
T Consensus        16 Rn~fY~Gnyq~~ine~~~~~~~---~~~~e~d~y~~raylAlg~~~~~~---~eI~~~~-~~~lqAvr~~a~~~~~e~~~   88 (299)
T KOG3081|consen   16 RNYFYLGNYQQCINEAEKFSSS---KTDVELDVYMYRAYLALGQYQIVI---SEIKEGK-ATPLQAVRLLAEYLELESNK   88 (299)
T ss_pred             HHHHHhhHHHHHHHHHHhhccc---cchhHHHHHHHHHHHHcccccccc---ccccccc-CChHHHHHHHHHHhhCcchh
Confidence            3344456777666655544432   244444455777788777665433   3333322 34445555555544444554


Q ss_pred             HHHH-HHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018582          144 SEVY-RIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKER  222 (353)
Q Consensus       144 ~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  222 (353)
                      ++-+ ++.+.+.......+......-...|+..+++++|.+..+...      +......=+..+.+..+.+-|.+.+++
T Consensus        89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~  162 (299)
T KOG3081|consen   89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK  162 (299)
T ss_pred             HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4443 344555544444444444455667899999999999987622      334444445667788999999999999


Q ss_pred             HHhcCCCCChhhHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHH
Q 018582          223 ARRRGADPNAKTWEIFSDYYLR----NGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEI  298 (353)
Q Consensus       223 ~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  298 (353)
                      |.+-.   +..|.+-|..++.+    .+.+..|.-+|++|.+.       ..|+..+.+....++...|++++|..+++.
T Consensus       163 mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-------~~~T~~llnG~Av~~l~~~~~eeAe~lL~e  232 (299)
T KOG3081|consen  163 MQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-------TPPTPLLLNGQAVCHLQLGRYEEAESLLEE  232 (299)
T ss_pred             HHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-------cCCChHHHccHHHHHHHhcCHHHHHHHHHH
Confidence            99752   66777777776653    45789999999999985       239999999999999999999999999999


Q ss_pred             HHhcCCCCChhhhHHHHHHHHHcCCChHHH
Q 018582          299 LKKAVDDLGVEVFEPLIRTYAAAGRTSPVM  328 (353)
Q Consensus       299 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~  328 (353)
                      ...... .++.+...++.+-...|..++..
T Consensus       233 aL~kd~-~dpetL~Nliv~a~~~Gkd~~~~  261 (299)
T KOG3081|consen  233 ALDKDA-KDPETLANLIVLALHLGKDAEVT  261 (299)
T ss_pred             HHhccC-CCHHHHHHHHHHHHHhCCChHHH
Confidence            999998 78888888888888888865444

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.76  E-value=1.6e-05  Score=60.83  Aligned_cols=188  Identities=14%  Similarity=0.134  Sum_probs=140.5

Q ss_pred             cCCcchHHHHHHHHHHC---C-CCCCcch-HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCH
Q 018582           34 TGHPEKIPAIIQEMKAS---S-IMPDSYT-YNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLF  108 (353)
Q Consensus        34 ~~~~~~a~~~~~~m~~~---~-~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  108 (353)
                      ..+.++.++++.++...   | ..++..+ |..++-+....|+.+.|...++.+..+  ++-+..+-..-...+-..|++
T Consensus        25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S~RV~~lkam~lEa~~~~  102 (289)
T KOG3060|consen   25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR--FPGSKRVGKLKAMLLEATGNY  102 (289)
T ss_pred             ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhch
Confidence            45678888888887653   3 4455553 555666777889999999999998887  655554444444445567889


Q ss_pred             HHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 018582          109 EKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEW  188 (353)
Q Consensus       109 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  188 (353)
                      ++|.++++.+.+..+. |.+++---+...-..|+.-+|++-+....+.-+ .|...|..+...|...|++++|.-.++++
T Consensus       103 ~~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~-~D~EAW~eLaeiY~~~~~f~kA~fClEE~  180 (289)
T KOG3060|consen  103 KEAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDKFM-NDQEAWHELAEIYLSEGDFEKAAFCLEEL  180 (289)
T ss_pred             hhHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence            9999999999887754 677777777777778888888888888877744 68899999999999999999999999998


Q ss_pred             HhcCCCCcHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhc
Q 018582          189 ESGCATYDIRVTNVMIGAYAKEG---RLENAEELKERARRR  226 (353)
Q Consensus       189 ~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~  226 (353)
                      .-.. +.+...+..+.+.+.-.|   +.+.+.+.|.+..+.
T Consensus       181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl  220 (289)
T KOG3060|consen  181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL  220 (289)
T ss_pred             HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            8765 336666666666655444   566788888888775

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.75  E-value=8.1e-07  Score=64.35  Aligned_cols=110  Identities=9%  Similarity=-0.110  Sum_probs=72.4

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHH
Q 018582          200 TNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTF  279 (353)
Q Consensus       200 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l  279 (353)
                      +..+...+...|++++|...|+...... +.+...|..+...+...|++++|...|+.....+       ..+...+..+
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-------p~~~~a~~~l   98 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-------ASHPEPVYQT   98 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-------CCCcHHHHHH
Confidence            3345566667777777777777766653 2256666777777777777777777777777664       1346666777


Q ss_pred             HHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHH
Q 018582          280 MRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTY  318 (353)
Q Consensus       280 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  318 (353)
                      ..++...|++++|...|+...+..+ .++..|.....+.
T Consensus        99 g~~l~~~g~~~eAi~~~~~Al~~~p-~~~~~~~~~~~~~  136 (144)
T PRK15359         99 GVCLKMMGEPGLAREAFQTAIKMSY-ADASWSEIRQNAQ  136 (144)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHH
Confidence            7777777777777777777777666 5655555544443

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.73  E-value=7.8e-05  Score=63.93  Aligned_cols=183  Identities=10%  Similarity=0.062  Sum_probs=106.3

Q ss_pred             hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 018582            2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEE   81 (353)
Q Consensus         2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~   81 (353)
                      +++|.+.-+.+...+ +.|...+..=+-+..+.++|++|+.+.+.-..  ...+...+---..+..+.+..++|...++-
T Consensus        28 ~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~Yrlnk~Dealk~~~~  104 (652)
T KOG2376|consen   28 YEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAYCEYRLNKLDEALKTLKG  104 (652)
T ss_pred             HHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHHHHHHcccHHHHHHHHhc
Confidence            466777777777655 34556666666777777888888754432211  011111112223345577788888887771


Q ss_pred             HHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCC---------------------------CHHHHHHHH
Q 018582           82 MKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHR---------------------------DLSAYQFLI  134 (353)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------------------~~~~~~~l~  134 (353)
                      .     .+.+..+...-...+.+.|++++|+.+|+.+.+.+..-                           ...+|..+.
T Consensus       105 ~-----~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~y  179 (652)
T KOG2376|consen  105 L-----DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLY  179 (652)
T ss_pred             c-----cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHH
Confidence            1     22333455566677788888999999988886654320                           111333332


Q ss_pred             ---HHHHccCCHHHHHHHHHHHHHhC-------CCCChh-------HHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 018582          135 ---TLYGQTGNLSEVYRIWRSLRLAF-------PNTANI-------SYLNMIQVLVNLKDLPGAEKCFKEWESGC  192 (353)
Q Consensus       135 ---~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  192 (353)
                         ..+...|++.+|+++++.....+       -.-+..       .-..+.-.+-..|+.++|.+++..+.+..
T Consensus       180 N~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~  254 (652)
T KOG2376|consen  180 NTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN  254 (652)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence               34556788888888888763221       111111       12233445566788888888888877655

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.72  E-value=2.7e-05  Score=59.62  Aligned_cols=203  Identities=14%  Similarity=0.131  Sum_probs=149.8

Q ss_pred             hcCCHHHHHHHHHHHHH---cc-CCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 018582          104 EAGLFEKAERALKELEN---RN-AHRDL-SAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDL  178 (353)
Q Consensus       104 ~~~~~~~a~~~~~~~~~---~~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  178 (353)
                      ...+.++..+++.++..   .| ..++. ..|..++-+....|+.+.|...++++...-+. +...-..-..-+-..|++
T Consensus        24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~-S~RV~~lkam~lEa~~~~  102 (289)
T KOG3060|consen   24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG-SKRVGKLKAMLLEATGNY  102 (289)
T ss_pred             cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhch
Confidence            34678889999988854   33 34443 34566777888899999999999999887532 222222223335567999


Q ss_pred             hHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHH
Q 018582          179 PGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKA  258 (353)
Q Consensus       179 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~  258 (353)
                      ++|.++++.+.+.++. |..++-.=+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-+++++
T Consensus       103 ~~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~  180 (289)
T KOG3060|consen  103 KEAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL  180 (289)
T ss_pred             hhHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence            9999999999988744 7777776677777788888999988888876 5669999999999999999999999999999


Q ss_pred             HHcCCCCCCCCccc-HHHHHHHHHHHHhc---CChhhHHHHHHHHHhcCCCCChhhhHHHHHHH
Q 018582          259 IDTGRGDGGKWVPS-SETIRTFMRHFEQE---KDVDGAEGFLEILKKAVDDLGVEVFEPLIRTY  318 (353)
Q Consensus       259 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  318 (353)
                      +-..        |. +..+..+...+.-.   .+.+.+.+.|.+..+..+ .+...+..+..++
T Consensus       181 ll~~--------P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~-~~~ral~GI~lc~  235 (289)
T KOG3060|consen  181 LLIQ--------PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP-KNLRALFGIYLCG  235 (289)
T ss_pred             HHcC--------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh-HhHHHHHHHHHHH
Confidence            9876        54 55556666654433   357788899999888776 4555444443333

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.65  E-value=0.00012  Score=58.80  Aligned_cols=288  Identities=12%  Similarity=0.065  Sum_probs=202.2

Q ss_pred             HHHHHHHHHHhcCCCCCchhHHHHH---HHHHhcCCcchHHHHHHHHHHCCCCCCcchH-HHHHHHHHhcCChhHHHHHH
Q 018582            4 KAEALLEKMKELNLGFSSMPFNSLM---TLYAKTGHPEKIPAIIQEMKASSIMPDSYTY-NVWMRALAAVNDISGAERVI   79 (353)
Q Consensus         4 ~A~~~~~~m~~~~~~~~~~~~~~ll---~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~   79 (353)
                      .|+.-|....+    .|+..|.++.   ..|...|+...|+.=+.+..+  .+||-..- ..-...+.+.|.++.|..=|
T Consensus        56 DALt~yHaAve----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~Gele~A~~DF  129 (504)
T KOG0624|consen   56 DALTHYHAAVE----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQGELEQAEADF  129 (504)
T ss_pred             HHHHHHHHHHc----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhcccHHHHHHHH
Confidence            34444555444    3445555544   468888998889888888877  46775432 22345678999999999999


Q ss_pred             HHHHHcCCCCCcH----HHH------------HHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCH
Q 018582           80 EEMKRDGRVAADW----TTF------------SNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNL  143 (353)
Q Consensus        80 ~~~~~~~~~~~~~----~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  143 (353)
                      +...+..   |+.    ..+            ...+..+...|+...|+.....+.+..+. |...|..-..+|...|++
T Consensus       130 ~~vl~~~---~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W-da~l~~~Rakc~i~~~e~  205 (504)
T KOG0624|consen  130 DQVLQHE---PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW-DASLRQARAKCYIAEGEP  205 (504)
T ss_pred             HHHHhcC---CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc-hhHHHHHHHHHHHhcCcH
Confidence            9998853   321    111            22344566789999999999999887655 888888888999999999


Q ss_pred             HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHH---HH-------H--HHHHHhcC
Q 018582          144 SEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVT---NV-------M--IGAYAKEG  211 (353)
Q Consensus       144 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~-------l--i~~~~~~g  211 (353)
                      ..|+.=++...+... -+..++-.+-..+...|+.+.++...++.++.++.. -..|   ..       |  +......+
T Consensus       206 k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdH-K~Cf~~YKklkKv~K~les~e~~ie~~  283 (504)
T KOG0624|consen  206 KKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDH-KLCFPFYKKLKKVVKSLESAEQAIEEK  283 (504)
T ss_pred             HHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcch-hhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            999887776654432 355666677788889999999999999888765331 1111   11       1  12234556


Q ss_pred             ChHHHHHHHHHHHhcCCCCChh---hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc-HHHHHHHHHHHHhcC
Q 018582          212 RLENAEELKERARRRGADPNAK---TWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEK  287 (353)
Q Consensus       212 ~~~~a~~~~~~~~~~~~~p~~~---~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~  287 (353)
                      ++-++.+-.+.+.+..+.....   .+..+-.++...+++-+|++.-.+.++..        |+ +.++.--..+|.-..
T Consensus       284 ~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d--------~~dv~~l~dRAeA~l~dE  355 (504)
T KOG0624|consen  284 HWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID--------PDDVQVLCDRAEAYLGDE  355 (504)
T ss_pred             hHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC--------chHHHHHHHHHHHHhhhH
Confidence            7777777777777664332223   34455566777889999999999998875        55 888988899999889


Q ss_pred             ChhhHHHHHHHHHhcCCCCChhhhH
Q 018582          288 DVDGAEGFLEILKKAVDDLGVEVFE  312 (353)
Q Consensus       288 ~~~~a~~~~~~~~~~~~~~~~~~~~  312 (353)
                      .++.|..-|+...+.+. .|..+-.
T Consensus       356 ~YD~AI~dye~A~e~n~-sn~~~re  379 (504)
T KOG0624|consen  356 MYDDAIHDYEKALELNE-SNTRARE  379 (504)
T ss_pred             HHHHHHHHHHHHHhcCc-ccHHHHH
Confidence            99999999998888776 5544433

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.65  E-value=5.7e-05  Score=68.80  Aligned_cols=82  Identities=20%  Similarity=0.218  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 018582           94 TFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLV  173 (353)
Q Consensus        94 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  173 (353)
                      +|..+..+-.+.|.+.+|.+-|-+.      -|+..|..+++...+.|.|++..+++...++....|...  +.++-+|+
T Consensus      1106 vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyA 1177 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYA 1177 (1666)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHH
Confidence            4445555555555555554444322      134455555555555555555555555444443333222  24444555


Q ss_pred             hcCChhHHHH
Q 018582          174 NLKDLPGAEK  183 (353)
Q Consensus       174 ~~~~~~~a~~  183 (353)
                      +.++..+.++
T Consensus      1178 kt~rl~elE~ 1187 (1666)
T KOG0985|consen 1178 KTNRLTELEE 1187 (1666)
T ss_pred             HhchHHHHHH
Confidence            5554444333

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.64  E-value=7.8e-05  Score=62.58  Aligned_cols=156  Identities=16%  Similarity=0.120  Sum_probs=93.5

Q ss_pred             HHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHH
Q 018582          102 YVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGA  181 (353)
Q Consensus       102 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  181 (353)
                      +...|+++.|+..++.+...-+. |+..+......+...++.++|.+.++.+....+. .......+..++.+.|++.+|
T Consensus       316 ~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~ea  393 (484)
T COG4783         316 TYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEA  393 (484)
T ss_pred             HHHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHH
Confidence            34566777777777776654332 5555555666777777777777777776665432 134445566677777777777


Q ss_pred             HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 018582          182 EKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDT  261 (353)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  261 (353)
                      ..+++......+. |+..|..|.++|...|+..++..-..+                  .+...|+++.|...+....+.
T Consensus       394 i~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~  454 (484)
T COG4783         394 IRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQQ  454 (484)
T ss_pred             HHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHh
Confidence            7777776665533 667777777777777766665544333                  344456666666666666555


Q ss_pred             CCCCCCCCcccHHHHHHHHHH
Q 018582          262 GRGDGGKWVPSSETIRTFMRH  282 (353)
Q Consensus       262 ~~~~~~~~~~~~~~~~~l~~~  282 (353)
                      ...    -.|+-.-+...|..
T Consensus       455 ~~~----~~~~~aR~dari~~  471 (484)
T COG4783         455 VKL----GFPDWARADARIDQ  471 (484)
T ss_pred             ccC----CcHHHHHHHHHHHH
Confidence            311    22454444444443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.60  E-value=4.4e-06  Score=60.07  Aligned_cols=97  Identities=14%  Similarity=0.046  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 018582          164 SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYL  243 (353)
Q Consensus       164 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~  243 (353)
                      ....+...+...|++++|...++.+...++. +...+..+...+...|++++|...+++..+.+ +.+...+..+...+.
T Consensus        19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~   96 (135)
T TIGR02552        19 QIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLL   96 (135)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence            3444555555666666666666666554422 55566666666666666666666666655543 224455555556666


Q ss_pred             ccCChHHHHHHHHHHHHcC
Q 018582          244 RNGDMKLAVDCLEKAIDTG  262 (353)
Q Consensus       244 ~~~~~~~a~~~~~~~~~~~  262 (353)
                      ..|++++|...|+...+..
T Consensus        97 ~~g~~~~A~~~~~~al~~~  115 (135)
T TIGR02552        97 ALGEPESALKALDLAIEIC  115 (135)
T ss_pred             HcCCHHHHHHHHHHHHHhc
Confidence            6666666666666666654

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.58  E-value=6.4e-06  Score=59.19  Aligned_cols=95  Identities=14%  Similarity=0.099  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 018582           94 TFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLV  173 (353)
Q Consensus        94 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  173 (353)
                      ....+...+.+.|++++|.+.|+.+...++. +...+..+...+...|++++|...+++....++ .+...+..+..++.
T Consensus        19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~   96 (135)
T TIGR02552        19 QIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALDP-DDPRPYFHAAECLL   96 (135)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHH
Confidence            3344444444555555555555554443322 344444444444445555555555544443322 12333333444444


Q ss_pred             hcCChhHHHHHHHHHHh
Q 018582          174 NLKDLPGAEKCFKEWES  190 (353)
Q Consensus       174 ~~~~~~~a~~~~~~~~~  190 (353)
                      ..|++++|...++...+
T Consensus        97 ~~g~~~~A~~~~~~al~  113 (135)
T TIGR02552        97 ALGEPESALKALDLAIE  113 (135)
T ss_pred             HcCCHHHHHHHHHHHHH
Confidence            44444444444444443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.56  E-value=0.00017  Score=65.90  Aligned_cols=268  Identities=10%  Similarity=0.073  Sum_probs=129.6

Q ss_pred             hhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHH
Q 018582           22 MPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASI  101 (353)
Q Consensus        22 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  101 (353)
                      ..|+.+..+-.+.|...+|++-|-+.      -|+..|.-+++.+.+.|.+++-.+.+...++.. ..|...+  .|+-+
T Consensus      1105 ~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~-~E~~id~--eLi~A 1175 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKV-REPYIDS--ELIFA 1175 (1666)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh-cCccchH--HHHHH
Confidence            34444444444444444444444211      234445555555555555555555555554443 3444333  45555


Q ss_pred             HHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHH
Q 018582          102 YVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGA  181 (353)
Q Consensus       102 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  181 (353)
                      |++.++..+.++.+.       -|+......+.+-|...|.++.|.-+|..         ..-|..+...+...|++..|
T Consensus      1176 yAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred             HHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHH
Confidence            555555444443321       23444444444555555555555444432         22344444444445555444


Q ss_pred             HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 018582          182 EKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDT  261 (353)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  261 (353)
                      ...-++.      .+..+|..+-.+|...+.+.-|     +|...++.....-...++..|...|-+++.+.+++..+..
T Consensus      1240 VD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGL 1308 (1666)
T KOG0985|consen 1240 VDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGL 1308 (1666)
T ss_pred             HHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhch
Confidence            4333321      1344555555555444443322     2222233334445566777777777777777776665433


Q ss_pred             CCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHh-cCC------CCChhhhHHHHHHHHHcCCChHHHHHHHH
Q 018582          262 GRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKK-AVD------DLGVEVFEPLIRTYAAAGRTSPVMLRRLK  333 (353)
Q Consensus       262 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~------~~~~~~~~~l~~~~~~~g~~~~~~~~~m~  333 (353)
                      .       ......|+-|.-.|++-. ++...+-++-.-. .++      ......|.-|+-.|.+-..++.+.+..|.
T Consensus      1309 E-------RAHMgmfTELaiLYskyk-p~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~tmm~ 1379 (1666)
T KOG0985|consen 1309 E-------RAHMGMFTELAILYSKYK-PEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAALTMME 1379 (1666)
T ss_pred             h-------HHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHh
Confidence            1       134456666666666542 3433333332221 122      01245677777777776666666555554

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.55  E-value=0.00011  Score=61.64  Aligned_cols=119  Identities=11%  Similarity=-0.018  Sum_probs=64.3

Q ss_pred             HhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHccCChHHH
Q 018582          173 VNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPN-AKTWEIFSDYYLRNGDMKLA  251 (353)
Q Consensus       173 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~a  251 (353)
                      ...|++++|+..++.+.+..+ -|+..+....+.+.+.++.++|.+.++.+...  .|+ ....-.+..+|.+.|++.+|
T Consensus       317 ~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ea  393 (484)
T COG4783         317 YLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEA  393 (484)
T ss_pred             HHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHH
Confidence            345556666666666555432 25555555555566666666666666665554  233 33444455556666666666


Q ss_pred             HHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 018582          252 VDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKK  301 (353)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  301 (353)
                      +.++++.....       +.|+..|..|.++|...|+..++.....+...
T Consensus       394 i~~L~~~~~~~-------p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~  436 (484)
T COG4783         394 IRILNRYLFND-------PEDPNGWDLLAQAYAELGNRAEALLARAEGYA  436 (484)
T ss_pred             HHHHHHHhhcC-------CCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            66666555553       12455556666666655555555554444433

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.52  E-value=4e-05  Score=69.56  Aligned_cols=130  Identities=12%  Similarity=0.109  Sum_probs=61.2

Q ss_pred             hhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHH
Q 018582           22 MPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASI  101 (353)
Q Consensus        22 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  101 (353)
                      ..|..|...|....+...|...|++..+.+ ..+...+......|++..+++.|..+.-..-+......-..-|....-.
T Consensus       493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y  571 (1238)
T KOG1127|consen  493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY  571 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence            456666666666666666666666665532 2234445555566666666666655522221110000001111122333


Q ss_pred             HHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 018582          102 YVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSL  153 (353)
Q Consensus       102 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  153 (353)
                      |.+.++..+|..-|+......|. |...|..+..+|...|++..|+++|.+.
T Consensus       572 yLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kA  622 (1238)
T KOG1127|consen  572 YLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKA  622 (1238)
T ss_pred             ccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhh
Confidence            44444444444444444443332 4444555555555555555555555444

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.49  E-value=1.4e-05  Score=67.17  Aligned_cols=123  Identities=14%  Similarity=0.162  Sum_probs=82.9

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHc
Q 018582           60 NVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQ  139 (353)
Q Consensus        60 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  139 (353)
                      ..+++.+...++++.|..+|+++.+.   .|+..  ..++..+...++-.+|.+++.+..+..+. +..........+.+
T Consensus       173 ~~Ll~~l~~t~~~~~ai~lle~L~~~---~pev~--~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~  246 (395)
T PF09295_consen  173 DTLLKYLSLTQRYDEAIELLEKLRER---DPEVA--VLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLS  246 (395)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHhc---CCcHH--HHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence            34555566667777777777777764   25433  34667777777777777777777655433 56666666667777


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 018582          140 TGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWE  189 (353)
Q Consensus       140 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  189 (353)
                      .++++.|+++.+++....+ -+-.+|..|..+|...|+++.|+..++.+.
T Consensus       247 k~~~~lAL~iAk~av~lsP-~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  247 KKKYELALEIAKKAVELSP-SEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             cCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            7777777777777766533 234477777777777777777777777654

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.48  E-value=2.1e-07  Score=49.13  Aligned_cols=34  Identities=29%  Similarity=0.477  Sum_probs=26.2

Q ss_pred             hHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCc
Q 018582           23 PFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDS   56 (353)
Q Consensus        23 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~   56 (353)
                      +||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence            6777888888888888888888888777777763

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.47  E-value=0.00067  Score=61.29  Aligned_cols=223  Identities=13%  Similarity=0.101  Sum_probs=127.0

Q ss_pred             HhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHH--HHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHH
Q 018582           32 AKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRA--LAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFE  109 (353)
Q Consensus        32 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  109 (353)
                      ...+++.+|+....++.+..  ||. .|..++.+  +.+.|..++|..+++.....+  ..|..|...+-.+|.+.++.+
T Consensus        20 ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d   94 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLD   94 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhh
Confidence            45677788888888877653  443 23334443  457788888888777776654  337777888888888888888


Q ss_pred             HHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC-h---------h
Q 018582          110 KAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKD-L---------P  179 (353)
Q Consensus       110 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~---------~  179 (353)
                      +|..++++.....  |+..-...+..+|.+.+.+.+-.+.--++-+.-+ -+.+.|-++++.....-. .         .
T Consensus        95 ~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~p-k~~yyfWsV~Slilqs~~~~~~~~~~i~l~  171 (932)
T KOG2053|consen   95 EAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFP-KRAYYFWSVISLILQSIFSENELLDPILLA  171 (932)
T ss_pred             HHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-cccchHHHHHHHHHHhccCCcccccchhHH
Confidence            8888888876643  4566666677777777777654444444433322 344555566665544321 1         1


Q ss_pred             HHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhcCChHHHHHHHHH-HHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHH
Q 018582          180 GAEKCFKEWESGC-ATYDIRVTNVMIGAYAKEGRLENAEELKER-ARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEK  257 (353)
Q Consensus       180 ~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~  257 (353)
                      -|.+.++.+.+.+ .--+..-...-...+...|.+++|.+++.. ..+.-..-+...-+.-+..+...+++.+..++-.+
T Consensus       172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~  251 (932)
T KOG2053|consen  172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR  251 (932)
T ss_pred             HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence            2444444444332 111111111112233445667777776633 22322222233333445556666677777777666


Q ss_pred             HHHcC
Q 018582          258 AIDTG  262 (353)
Q Consensus       258 ~~~~~  262 (353)
                      +...|
T Consensus       252 Ll~k~  256 (932)
T KOG2053|consen  252 LLEKG  256 (932)
T ss_pred             HHHhC
Confidence            66666

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.47  E-value=0.00025  Score=63.46  Aligned_cols=159  Identities=19%  Similarity=0.187  Sum_probs=87.4

Q ss_pred             ChHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 018582            1 MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIE   80 (353)
Q Consensus         1 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~   80 (353)
                      |+++|..++.+.++         |..|=..|-..|.|++|+++-+.--+-   .=..||.....-+-..+|.+.|++.|+
T Consensus       815 MlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Lear~Di~~AleyyE  882 (1416)
T KOG3617|consen  815 MLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLEARRDIEAALEYYE  882 (1416)
T ss_pred             hHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHHHHHHHhhccHHHHHHHHH
Confidence            56777777777766         333444556678888887775432221   123466666666667777877777766


Q ss_pred             HHH----------HcCCCCCc----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcc
Q 018582           81 EMK----------RDGRVAAD----------WTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQT  140 (353)
Q Consensus        81 ~~~----------~~~~~~~~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  140 (353)
                      +.-          ..  .++.          ...|.--...+-..|+.|.|+.++....+         |-.+++..|-.
T Consensus       883 K~~~hafev~rmL~e--~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~q  951 (1416)
T KOG3617|consen  883 KAGVHAFEVFRMLKE--YPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQ  951 (1416)
T ss_pred             hcCChHHHHHHHHHh--ChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeec
Confidence            431          11  2222          22222233334456677777776665432         33444444455


Q ss_pred             CCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 018582          141 GNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEW  188 (353)
Q Consensus       141 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  188 (353)
                      |+.++|-++-++-      -|....-.+...|-..|++.+|..+|.+.
T Consensus       952 Gk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrA  993 (1416)
T KOG3617|consen  952 GKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRA  993 (1416)
T ss_pred             cCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            5555555444321      24444455666666666666666666554

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.47  E-value=0.001  Score=60.22  Aligned_cols=219  Identities=13%  Similarity=0.114  Sum_probs=151.0

Q ss_pred             hHHHHHHHHHHHhcCCCCCchhHHHHHHH--HHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHH
Q 018582            2 TEKAEALLEKMKELNLGFSSMPFNSLMTL--YAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVI   79 (353)
Q Consensus         2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~   79 (353)
                      +.+|....+.+.++-  |+.. |...+.+  ..+.|+.++|..+++.....+. .|..|...+-.+|...++.++|..+|
T Consensus        25 fkkal~~~~kllkk~--Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~~~~Y  100 (932)
T KOG2053|consen   25 FKKALAKLGKLLKKH--PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDEAVHLY  100 (932)
T ss_pred             HHHHHHHHHHHHHHC--CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhHHHHHH
Confidence            456777777776543  4433 4444444  4678999999988887766543 37778999999999999999999999


Q ss_pred             HHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccC-CHH---------HHHHH
Q 018582           80 EEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTG-NLS---------EVYRI  149 (353)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~---------~a~~~  149 (353)
                      ++..+.   -|+......+..+|.+.+++.+-.++--++.+.-+. ....+-.+++.....- ..+         -|.+.
T Consensus       101 e~~~~~---~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk-~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m  176 (932)
T KOG2053|consen  101 ERANQK---YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPK-RAYYFWSVISLILQSIFSENELLDPILLALAEKM  176 (932)
T ss_pred             HHHHhh---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-ccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence            999985   477888888999999999887766665555543333 4455555555554432 222         24444


Q ss_pred             HHHHHHhC-CCCChhHHHHHHHHHHhcCChhHHHHHHH-HHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 018582          150 WRSLRLAF-PNTANISYLNMIQVLVNLKDLPGAEKCFK-EWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRG  227 (353)
Q Consensus       150 ~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  227 (353)
                      ++.+.+.+ .--+..-...-...+...|++++|..++. ...+.-.+.+...-+.-++.+...+++.+..++-.++..+|
T Consensus       177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~  256 (932)
T KOG2053|consen  177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG  256 (932)
T ss_pred             HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence            55554443 22222223334455667899999999994 44444445566666778889999999999999999999886


Q ss_pred             C
Q 018582          228 A  228 (353)
Q Consensus       228 ~  228 (353)
                      .
T Consensus       257 ~  257 (932)
T KOG2053|consen  257 N  257 (932)
T ss_pred             C
Confidence            3

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.45  E-value=4.2e-05  Score=55.61  Aligned_cols=22  Identities=9%  Similarity=-0.016  Sum_probs=9.8

Q ss_pred             HHHHccCCHHHHHHHHHHHHHh
Q 018582          135 TLYGQTGNLSEVYRIWRSLRLA  156 (353)
Q Consensus       135 ~~~~~~~~~~~a~~~~~~~~~~  156 (353)
                      ..+...|++++|...|+.....
T Consensus        56 ~~~~~~g~~~~A~~~l~~~~~~   77 (145)
T PF09976_consen   56 KAAYEQGDYDEAKAALEKALAN   77 (145)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhh
Confidence            3344444444444444444443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.45  E-value=2e-05  Score=57.28  Aligned_cols=87  Identities=17%  Similarity=0.177  Sum_probs=38.5

Q ss_pred             HHHHHhcCChHHHHHHHHHHHhcCCCCCh--hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHH
Q 018582          204 IGAYAKEGRLENAEELKERARRRGADPNA--KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMR  281 (353)
Q Consensus       204 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  281 (353)
                      ...+...|++++|...|+.+......|+.  .....+...+...|++++|+..++......        .....+.....
T Consensus        55 A~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~--------~~~~~~~~~Gd  126 (145)
T PF09976_consen   55 AKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEA--------FKALAAELLGD  126 (145)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcc--------hHHHHHHHHHH
Confidence            34444455555555555555544311111  122233444455555555555554321111        22333444444


Q ss_pred             HHHhcCChhhHHHHHHH
Q 018582          282 HFEQEKDVDGAEGFLEI  298 (353)
Q Consensus       282 ~~~~~~~~~~a~~~~~~  298 (353)
                      .+.+.|++++|...|+.
T Consensus       127 i~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen  127 IYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHCCCHHHHHHHHHH
Confidence            55555555555555543

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.45  E-value=2.8e-07  Score=48.25  Aligned_cols=33  Identities=30%  Similarity=0.598  Sum_probs=24.0

Q ss_pred             hhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCC
Q 018582           22 MPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMP   54 (353)
Q Consensus        22 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p   54 (353)
                      .+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            467777777777777777777777777777665

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.45  E-value=5.4e-05  Score=66.77  Aligned_cols=109  Identities=19%  Similarity=0.176  Sum_probs=75.5

Q ss_pred             HHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCh
Q 018582          134 ITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRL  213 (353)
Q Consensus       134 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  213 (353)
                      +.+......|.+|+.+++.+.....  -..-|..+.+.|+..|+++.|.++|.+.         ..++-.|..|.+.|++
T Consensus       739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw  807 (1636)
T KOG3616|consen  739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW  807 (1636)
T ss_pred             HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence            4455667788888888887766543  3345778888999999999999988653         2345568889999999


Q ss_pred             HHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHH
Q 018582          214 ENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCL  255 (353)
Q Consensus       214 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~  255 (353)
                      ++|.++-.+..  |.......|..-..-+-.+|++.+|.+++
T Consensus       808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqly  847 (1636)
T KOG3616|consen  808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLY  847 (1636)
T ss_pred             HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence            99988876644  23334455555555556666666665554

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.44  E-value=1.2e-05  Score=67.57  Aligned_cols=126  Identities=16%  Similarity=0.148  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 018582          164 SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYL  243 (353)
Q Consensus       164 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~  243 (353)
                      ....++..+...++++.|..+++++.+..  |+  ....++..+...++..+|.+++++..+.. +-+......-...|.
T Consensus       171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl  245 (395)
T PF09295_consen  171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL  245 (395)
T ss_pred             HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            34556666777778888888888887764  33  34456777777777778888888877652 225555555666677


Q ss_pred             ccCChHHHHHHHHHHHHcCCCCCCCCccc-HHHHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 018582          244 RNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKA  302 (353)
Q Consensus       244 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  302 (353)
                      +.++++.|+++.+++....        |+ -.+|..|..+|.+.|+++.|+-.++.+.-.
T Consensus       246 ~k~~~~lAL~iAk~av~ls--------P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~  297 (395)
T PF09295_consen  246 SKKKYELALEIAKKAVELS--------PSEFETWYQLAECYIQLGDFENALLALNSCPML  297 (395)
T ss_pred             hcCCHHHHHHHHHHHHHhC--------chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence            8888888888888888765        54 457888888888888888888777765443

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.42  E-value=5.7e-05  Score=68.63  Aligned_cols=147  Identities=13%  Similarity=0.093  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCC-CCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 018582            4 KAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASS-IMPDSYTYNVWMRALAAVNDISGAERVIEEM   82 (353)
Q Consensus         4 ~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~   82 (353)
                      .|.+.|+...+.+. -+...+......|++..+++.|..+.-..-+.. ...-...|....-.+...++...|..-|+..
T Consensus       510 RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsA  588 (1238)
T KOG1127|consen  510 RAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSA  588 (1238)
T ss_pred             HHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHH
Confidence            56777777766653 567889999999999999999999843322211 0111223333444567778889999999988


Q ss_pred             HHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 018582           83 KRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLR  154 (353)
Q Consensus        83 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  154 (353)
                      .+.  .|.|...|..++.+|.++|.+..|.++|.+.....+. +...--.....-+..|.+.+|+..+....
T Consensus       589 LR~--dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~-s~y~~fk~A~~ecd~GkYkeald~l~~ii  657 (1238)
T KOG1127|consen  589 LRT--DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL-SKYGRFKEAVMECDNGKYKEALDALGLII  657 (1238)
T ss_pred             hcC--CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            886  5778889999999999999999999999888664332 22222222334566788888888777654

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.42  E-value=1.7e-05  Score=55.46  Aligned_cols=107  Identities=9%  Similarity=0.009  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--CChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHH
Q 018582          199 VTNVMIGAYAKEGRLENAEELKERARRRGAD--PNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETI  276 (353)
Q Consensus       199 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  276 (353)
                      ++..++..+.+.|++++|...|..+......  .....+..+...+.+.|+++.|.+.++.+......    ......++
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~~   79 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK----SPKAPDAL   79 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC----CCcccHHH
Confidence            3445555666666677777666666654211  01234445666666667777777777766655310    00113455


Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhh
Q 018582          277 RTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEV  310 (353)
Q Consensus       277 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  310 (353)
                      ..+..++.+.|+.++|.+.++++.+..| .+..+
T Consensus        80 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~  112 (119)
T TIGR02795        80 LKLGMSLQELGDKEKAKATLQQVIKRYP-GSSAA  112 (119)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHHHCc-CChhH
Confidence            5666666667777777777777666655 44433

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.40  E-value=5.7e-07  Score=47.44  Aligned_cols=33  Identities=36%  Similarity=0.572  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 018582          199 VTNVMIGAYAKEGRLENAEELKERARRRGADPN  231 (353)
Q Consensus       199 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~  231 (353)
                      +||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            466666666666666666666666666666665

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.38  E-value=9.1e-06  Score=68.68  Aligned_cols=133  Identities=12%  Similarity=0.123  Sum_probs=107.3

Q ss_pred             HHHHHHH---CCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018582           43 IIQEMKA---SSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGR-VAADWTTFSNLASIYVEAGLFEKAERALKEL  118 (353)
Q Consensus        43 ~~~~m~~---~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  118 (353)
                      ++..|.+   .+.+.+......+++.+....+++.+..++.+.+.... ...-..|..++++.|.+.|..+.++.+++.=
T Consensus        50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~  129 (429)
T PF10037_consen   50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR  129 (429)
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence            4444433   34566777888899999888999999999988887521 1122334569999999999999999999999


Q ss_pred             HHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 018582          119 ENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNL  175 (353)
Q Consensus       119 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  175 (353)
                      ...|+.||..+++.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus       130 ~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  130 LQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             hhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            999999999999999999999999999999999988776666777877777776665

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.35  E-value=1e-06  Score=46.03  Aligned_cols=33  Identities=27%  Similarity=0.455  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 018582          198 RVTNVMIGAYAKEGRLENAEELKERARRRGADP  230 (353)
Q Consensus       198 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p  230 (353)
                      .+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            355566666666666666666666666555554

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.32  E-value=0.00012  Score=64.64  Aligned_cols=164  Identities=19%  Similarity=0.287  Sum_probs=83.1

Q ss_pred             hcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHH
Q 018582           68 AVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVY  147 (353)
Q Consensus        68 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  147 (353)
                      ....+.+|+.+++.+..+   ..-...|..+.+-|...|+++.|.++|-+.-         .++-.|..|.+.|+|+.|.
T Consensus       744 ~akew~kai~ildniqdq---k~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~  811 (1636)
T KOG3616|consen  744 GAKEWKKAISILDNIQDQ---KTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAF  811 (1636)
T ss_pred             hhhhhhhhHhHHHHhhhh---ccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHH
Confidence            334455555555555442   2233345555566666666666666654321         2334455666666666666


Q ss_pred             HHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 018582          148 RIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRG  227 (353)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  227 (353)
                      ++-.+.  .|+......|.+-..-+-..|++.+|.++|-.+.    .|+     ..|..|-+.|..+..+++..+-... 
T Consensus       812 kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~d-  879 (1636)
T KOG3616|consen  812 KLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGD-  879 (1636)
T ss_pred             HHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhChh-
Confidence            554433  2333333444444444555566666665553322    222     2355566666666666555442211 


Q ss_pred             CCCChhhHHHHHHHHHccCChHHHHHHHHH
Q 018582          228 ADPNAKTWEIFSDYYLRNGDMKLAVDCLEK  257 (353)
Q Consensus       228 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~  257 (353)
                        .-..|...+..-|-..|+.+.|.+-|-+
T Consensus       880 --~l~dt~~~f~~e~e~~g~lkaae~~fle  907 (1636)
T KOG3616|consen  880 --HLHDTHKHFAKELEAEGDLKAAEEHFLE  907 (1636)
T ss_pred             --hhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence              1123445556666666777766665533

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.24  E-value=0.00012  Score=51.22  Aligned_cols=21  Identities=14%  Similarity=0.273  Sum_probs=8.0

Q ss_pred             HHHHHHccCCHHHHHHHHHHH
Q 018582          133 LITLYGQTGNLSEVYRIWRSL  153 (353)
Q Consensus       133 l~~~~~~~~~~~~a~~~~~~~  153 (353)
                      +...+.+.|+++.|...|+.+
T Consensus        45 l~~~~~~~~~~~~A~~~~~~~   65 (119)
T TIGR02795        45 LGEAYYAQGKYADAAKAFLAV   65 (119)
T ss_pred             HHHHHHhhccHHHHHHHHHHH
Confidence            333333333333333333333

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.23  E-value=3.8e-05  Score=51.00  Aligned_cols=85  Identities=19%  Similarity=0.208  Sum_probs=32.7

Q ss_pred             HHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHH
Q 018582           65 ALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLS  144 (353)
Q Consensus        65 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  144 (353)
                      .+...|++++|...++.+.+.  .+.+...+..+..++...+++++|.+.++......+. +..++..+...+...|+++
T Consensus         9 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   85 (100)
T cd00189           9 LYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKLGKYE   85 (100)
T ss_pred             HHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHHHhHH
Confidence            333344444444444444332  1222233333444444444444444444443332221 2223333334444444444


Q ss_pred             HHHHHHHH
Q 018582          145 EVYRIWRS  152 (353)
Q Consensus       145 ~a~~~~~~  152 (353)
                      +|...+..
T Consensus        86 ~a~~~~~~   93 (100)
T cd00189          86 EALEAYEK   93 (100)
T ss_pred             HHHHHHHH
Confidence            44444433

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.23  E-value=0.00039  Score=62.32  Aligned_cols=212  Identities=14%  Similarity=0.157  Sum_probs=146.7

Q ss_pred             CchhHHHHHHHHHhcCCcchHHHHHHHHHHC-C--------CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 018582           20 SSMPFNSLMTLYAKTGHPEKIPAIIQEMKAS-S--------IMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAA   90 (353)
Q Consensus        20 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~--------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~   90 (353)
                      +...|..+...|.+..+.+-|.-.+-.|... |        -.|+ .+-.-+.-.....|.+++|..+|++-.+..    
T Consensus       756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D----  830 (1416)
T KOG3617|consen  756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD----  830 (1416)
T ss_pred             hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH----
Confidence            4467999999999999888887777666432 1        1122 333333344567889999999999887743    


Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH----------HHhCC--
Q 018582           91 DWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSL----------RLAFP--  158 (353)
Q Consensus        91 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----------~~~~~--  158 (353)
                            .|=..|-..|.+++|.++-+.=...  . =..||......+-..++.+.|++.|++.          ....+  
T Consensus       831 ------LlNKlyQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~  901 (1416)
T KOG3617|consen  831 ------LLNKLYQSQGMWSEAFEIAETKDRI--H-LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQ  901 (1416)
T ss_pred             ------HHHHHHHhcccHHHHHHHHhhccce--e-hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHH
Confidence                  3445666789999999887653221  1 2236666667777788888888887752          22211  


Q ss_pred             -------CCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 018582          159 -------NTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPN  231 (353)
Q Consensus       159 -------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~  231 (353)
                             ..|...|......+-..|+.+.|+.+|....         -|-.+++..|-.|+.++|-++-++-.      |
T Consensus       902 ~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~---------D~fs~VrI~C~qGk~~kAa~iA~esg------d  966 (1416)
T KOG3617|consen  902 IEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK---------DYFSMVRIKCIQGKTDKAARIAEESG------D  966 (1416)
T ss_pred             HHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh---------hhhhheeeEeeccCchHHHHHHHhcc------c
Confidence                   2355567777777778888888888887654         24567777788888888888876622      5


Q ss_pred             hhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 018582          232 AKTWEIFSDYYLRNGDMKLAVDCLEKAID  260 (353)
Q Consensus       232 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~  260 (353)
                      ....-.+.+.|-..|++.+|..+|.+...
T Consensus       967 ~AAcYhlaR~YEn~g~v~~Av~FfTrAqa  995 (1416)
T KOG3617|consen  967 KAACYHLARMYENDGDVVKAVKFFTRAQA  995 (1416)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            56666788888888999999888876543

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.23  E-value=0.0014  Score=52.02  Aligned_cols=180  Identities=20%  Similarity=0.212  Sum_probs=103.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHccCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh-
Q 018582           98 LASIYVEAGLFEKAERALKELENRNAHRDLS--AYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVN-  174 (353)
Q Consensus        98 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-  174 (353)
                      ....+.+.|++++|.+.|+.+...-+.+...  +.-.++.++.+.+++++|...+++..+..+.-...-|...+.+.+. 
T Consensus        38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~  117 (243)
T PRK10866         38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM  117 (243)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence            4444456677777777777776654432211  1134456667777777777777777766554333344333333321 


Q ss_pred             -cC---------------C---hhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhH
Q 018582          175 -LK---------------D---LPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTW  235 (353)
Q Consensus       175 -~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~  235 (353)
                       .+               +   ...|...|+.+++.               |=...-..+|...+..+...    =...-
T Consensus       118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~----la~~e  178 (243)
T PRK10866        118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR----LAKYE  178 (243)
T ss_pred             hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH----HHHHH
Confidence             10               1   11233344444333               32333344555544444322    01111


Q ss_pred             HHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 018582          236 EIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILK  300 (353)
Q Consensus       236 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  300 (353)
                      -.+..-|.+.|.+..|..-++.+++.-..    ..........++.+|...|..++|..+...+.
T Consensus       179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~----t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPD----TQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             HHHHHHHHHcCchHHHHHHHHHHHHHCCC----CchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence            24556788899999999999999987521    11345677788899999999999988777553

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.22  E-value=3.6e-05  Score=65.15  Aligned_cols=123  Identities=10%  Similarity=-0.017  Sum_probs=96.1

Q ss_pred             CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--cCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHH
Q 018582           88 VAADWTTFSNLASIYVEAGLFEKAERALKELENR--NAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISY  165 (353)
Q Consensus        88 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  165 (353)
                      .+.+......+++.+....+++.+..++-+....  ....-..+..++++.|.+.|..++++.++..=...|+-||..++
T Consensus        62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~  141 (429)
T PF10037_consen   62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF  141 (429)
T ss_pred             CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence            5667777778888888888888888888888664  22222345668889999999999999998888888888999999


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc
Q 018582          166 LNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKE  210 (353)
Q Consensus       166 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  210 (353)
                      +.+++.+.+.|++..|.++...|...+...+..++..-+.+|.+.
T Consensus       142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            999999999999999999888887766666666666666665555

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.22  E-value=1.8e-05  Score=52.53  Aligned_cols=79  Identities=13%  Similarity=0.187  Sum_probs=52.0

Q ss_pred             HHHHHHHHhcCCcchHHHHHHHHHHCCC-CCCcchHHHHHHHHHhcCC--------hhHHHHHHHHHHHcCCCCCcHHHH
Q 018582           25 NSLMTLYAKTGHPEKIPAIIQEMKASSI-MPDSYTYNVWMRALAAVND--------ISGAERVIEEMKRDGRVAADWTTF   95 (353)
Q Consensus        25 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~~   95 (353)
                      ...|..+...+++.....+|+.+++.|+ -|+..+|+.++.+.+++.-        .-..+.+|+.|...+ ++|+..+|
T Consensus        29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~-lKP~~etY  107 (120)
T PF08579_consen   29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNK-LKPNDETY  107 (120)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhc-cCCcHHHH
Confidence            3445555566777777778877777777 7777788777777665532        234556666666665 66666666


Q ss_pred             HHHHHHHHh
Q 018582           96 SNLASIYVE  104 (353)
Q Consensus        96 ~~l~~~~~~  104 (353)
                      +.++..+.+
T Consensus       108 nivl~~Llk  116 (120)
T PF08579_consen  108 NIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHH
Confidence            666665543

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.16  E-value=3.8e-05  Score=50.99  Aligned_cols=96  Identities=17%  Similarity=0.128  Sum_probs=79.7

Q ss_pred             hHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHH
Q 018582           23 PFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIY  102 (353)
Q Consensus        23 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  102 (353)
                      +|..+...+...|++++|...+++..+.. +.+...+..+..++...++++.|.+.++.....  .+.+..++..+...+
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~   78 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAY   78 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHH
Confidence            45667788888999999999999998753 334467778888899999999999999999886  355557888899999


Q ss_pred             HhcCCHHHHHHHHHHHHHc
Q 018582          103 VEAGLFEKAERALKELENR  121 (353)
Q Consensus       103 ~~~~~~~~a~~~~~~~~~~  121 (353)
                      ...|+++.|...+......
T Consensus        79 ~~~~~~~~a~~~~~~~~~~   97 (100)
T cd00189          79 YKLGKYEEALEAYEKALEL   97 (100)
T ss_pred             HHHHhHHHHHHHHHHHHcc
Confidence            9999999999999887654

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.15  E-value=0.0038  Score=53.55  Aligned_cols=208  Identities=13%  Similarity=0.078  Sum_probs=144.6

Q ss_pred             HHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHH
Q 018582          108 FEKAERALKELENRNAHRDLSAYQFLITLYGQT---GNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKC  184 (353)
Q Consensus       108 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  184 (353)
                      .+++..+++.....-...+...|..+.+.--..   ...+.....++++......--..+|...++...+..-...|..+
T Consensus       309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i  388 (656)
T KOG1914|consen  309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI  388 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence            455666666655433333444444444322222   23666777777776653333345788889999999999999999


Q ss_pred             HHHHHhcCCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 018582          185 FKEWESGCATY-DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGR  263 (353)
Q Consensus       185 ~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~  263 (353)
                      |.+..+.+..+ ++.++++++..||. ++.+-|.++|+--.++ ...++.--...++-+...++-..+..+|++....+.
T Consensus       389 F~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l  466 (656)
T KOG1914|consen  389 FKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL  466 (656)
T ss_pred             HHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence            99999877666 88889999998875 6788999999886654 232344456677888889999999999999999864


Q ss_pred             CCCCCCccc--HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC---CCChhhhHHHHHHHHHcCC
Q 018582          264 GDGGKWVPS--SETIRTFMRHFEQEKDVDGAEGFLEILKKAVD---DLGVEVFEPLIRTYAAAGR  323 (353)
Q Consensus       264 ~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~  323 (353)
                      +      |+  ..+|..++.-=..-|+...+.++-+++...-+   .+....-..+++-|.-.+.
T Consensus       467 ~------~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~  525 (656)
T KOG1914|consen  467 S------ADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDL  525 (656)
T ss_pred             C------hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccc
Confidence            3      44  58999999999999999999998887665332   1222334455555555554

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.14  E-value=5.5e-05  Score=50.34  Aligned_cols=41  Identities=10%  Similarity=0.097  Sum_probs=22.3

Q ss_pred             HHHHHccCCHHHHHHHHHHHHHhCC-CCChhHHHHHHHHHHh
Q 018582          134 ITLYGQTGNLSEVYRIWRSLRLAFP-NTANISYLNMIQVLVN  174 (353)
Q Consensus       134 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~  174 (353)
                      |..+...+++.....+|+.++..|+ .|+..+|+.++.+.++
T Consensus        32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~   73 (120)
T PF08579_consen   32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAK   73 (120)
T ss_pred             HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence            3444444555555555555555555 5555555555555443

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.14  E-value=0.00073  Score=55.23  Aligned_cols=129  Identities=16%  Similarity=0.184  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHhc-CChhHHHHHHHHHHh----cCC-CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-----Ch
Q 018582          164 SYLNMIQVLVNL-KDLPGAEKCFKEWES----GCA-TYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADP-----NA  232 (353)
Q Consensus       164 ~~~~l~~~~~~~-~~~~~a~~~~~~~~~----~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-----~~  232 (353)
                      .+..+...|... |+++.|.+.|++...    .+. ..-..++..+...+.+.|++++|.++|+++...-...     +.
T Consensus       116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~  195 (282)
T PF14938_consen  116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA  195 (282)
T ss_dssp             HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence            344455556666 777888877777543    221 1123455667778888888888888888876542221     11


Q ss_pred             h-hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcc--cHHHHHHHHHHHHhcCChhhHHHHHH
Q 018582          233 K-TWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP--SSETIRTFMRHFEQEKDVDGAEGFLE  297 (353)
Q Consensus       233 ~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~  297 (353)
                      . .+...+-.+...||+..|.+.+++.......    +..  .......|+.++-. ||.+.......
T Consensus       196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~----F~~s~E~~~~~~l~~A~~~-~D~e~f~~av~  258 (282)
T PF14938_consen  196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPS----FASSREYKFLEDLLEAYEE-GDVEAFTEAVA  258 (282)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT----STTSHHHHHHHHHHHHHHT-T-CCCHHHHCH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CCCcHHHHHHHHHHHHHHh-CCHHHHHHHHH
Confidence            1 2233344556678888888888887765411    112  23455666666543 44444333333

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.13  E-value=2.7e-06  Score=43.33  Aligned_cols=29  Identities=31%  Similarity=0.543  Sum_probs=20.0

Q ss_pred             hHHHHHHHHHhcCCcchHHHHHHHHHHCC
Q 018582           23 PFNSLMTLYAKTGHPEKIPAIIQEMKASS   51 (353)
Q Consensus        23 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~   51 (353)
                      +||.++++|++.|++++|.++|++|.+.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            56677777777777777777777776655

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.10  E-value=1.3e-05  Score=52.13  Aligned_cols=17  Identities=24%  Similarity=0.184  Sum_probs=6.3

Q ss_pred             HHHHHhcCChHHHHHHH
Q 018582          204 IGAYAKEGRLENAEELK  220 (353)
Q Consensus       204 i~~~~~~g~~~~a~~~~  220 (353)
                      ..++.+.|++++|+++|
T Consensus        65 a~~~~~l~~y~eAi~~l   81 (84)
T PF12895_consen   65 ARCLLKLGKYEEAIKAL   81 (84)
T ss_dssp             HHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHH
Confidence            33333444444444333

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.09  E-value=0.00038  Score=52.30  Aligned_cols=113  Identities=17%  Similarity=0.194  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcc-cHHH
Q 018582          199 VTNVMIGAYAKEGRLENAEELKERARRRGADPN--AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSET  275 (353)
Q Consensus       199 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~  275 (353)
                      .+..+...+...|++++|...|++..+....+.  ...+..+...+.+.|++++|...+.+..+..        | +...
T Consensus        37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~  108 (172)
T PRK02603         37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--------PKQPSA  108 (172)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------cccHHH
Confidence            344445555555555555555555554322211  2345555555556666666666666655543        2 2334


Q ss_pred             HHHHHHHHHhcCC--------------hhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCC
Q 018582          276 IRTFMRHFEQEKD--------------VDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR  323 (353)
Q Consensus       276 ~~~l~~~~~~~~~--------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  323 (353)
                      +..+..++...|+              +++|.+++++....++ .+   |..++..+...|+
T Consensus       109 ~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p-~~---~~~~~~~~~~~~~  166 (172)
T PRK02603        109 LNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAP-NN---YIEAQNWLKTTGR  166 (172)
T ss_pred             HHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCc-hh---HHHHHHHHHhcCc
Confidence            4444445544444              4666777777666554 33   5566666655554

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.08  E-value=0.00085  Score=50.40  Aligned_cols=82  Identities=12%  Similarity=0.012  Sum_probs=37.2

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 018582          130 YQFLITLYGQTGNLSEVYRIWRSLRLAFPNTA--NISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAY  207 (353)
Q Consensus       130 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~  207 (353)
                      +..+...+...|++++|...|++.......+.  ...+..+...+.+.|++++|...+.+.....+. +...+..+...+
T Consensus        38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~  116 (172)
T PRK02603         38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVIY  116 (172)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence            44444444445555555555554443322221  234444455555555555555555555443322 334444444444


Q ss_pred             HhcCC
Q 018582          208 AKEGR  212 (353)
Q Consensus       208 ~~~g~  212 (353)
                      ...|+
T Consensus       117 ~~~g~  121 (172)
T PRK02603        117 HKRGE  121 (172)
T ss_pred             HHcCC
Confidence            44444

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.07  E-value=1.9e-05  Score=51.30  Aligned_cols=80  Identities=16%  Similarity=0.193  Sum_probs=31.9

Q ss_pred             CChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 018582           70 NDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRI  149 (353)
Q Consensus        70 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  149 (353)
                      |+++.|+.+++++.+.....++...+..+..+|.+.|++++|..+++. ...+.. +....-.+..++.+.|++++|+++
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHHH
Confidence            444555555555554320011222333345555555555555555544 111111 112222334444455555555544


Q ss_pred             HH
Q 018582          150 WR  151 (353)
Q Consensus       150 ~~  151 (353)
                      |+
T Consensus        81 l~   82 (84)
T PF12895_consen   81 LE   82 (84)
T ss_dssp             HH
T ss_pred             Hh
Confidence            44

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.07  E-value=0.00022  Score=60.20  Aligned_cols=90  Identities=10%  Similarity=-0.076  Sum_probs=48.8

Q ss_pred             HHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChH
Q 018582          135 TLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLE  214 (353)
Q Consensus       135 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  214 (353)
                      ..+...|++++|++.|++..+..+ .+...|..+..++...|++++|...++++....+. +...|..+..+|...|+++
T Consensus        10 ~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~   87 (356)
T PLN03088         10 KEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQ   87 (356)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHH
Confidence            344455566666666665555443 23445555555555555666665555555554422 4445555555555555555


Q ss_pred             HHHHHHHHHHhc
Q 018582          215 NAEELKERARRR  226 (353)
Q Consensus       215 ~a~~~~~~~~~~  226 (353)
                      +|...|++..+.
T Consensus        88 eA~~~~~~al~l   99 (356)
T PLN03088         88 TAKAALEKGASL   99 (356)
T ss_pred             HHHHHHHHHHHh
Confidence            555555555543

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.05  E-value=0.00011  Score=62.02  Aligned_cols=96  Identities=15%  Similarity=0.073  Sum_probs=53.3

Q ss_pred             HHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHH---HHHHccCChHHHHHHHHHHHHcCCCCCCCCcc-cHHHHHHHH
Q 018582          205 GAYAKEGRLENAEELKERARRRGADPNAKTWEIFS---DYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFM  280 (353)
Q Consensus       205 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~  280 (353)
                      ..+...|++++|+..|++..+.    +......+.   .+|...|++++|+..++++++..        | +...|..+.
T Consensus        10 ~~a~~~~~~~~Ai~~~~~Al~~----~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--------P~~~~a~~~lg   77 (356)
T PLN03088         10 KEAFVDDDFALAVDLYTQAIDL----DPNNAELYADRAQANIKLGNFTEAVADANKAIELD--------PSLAKAYLRKG   77 (356)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------cCCHHHHHHHH
Confidence            3444556666666666666543    443333222   34455666666666666666654        3 345555566


Q ss_pred             HHHHhcCChhhHHHHHHHHHhcCCCCChhhhHH
Q 018582          281 RHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEP  313 (353)
Q Consensus       281 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  313 (353)
                      .+|...|++++|...|++..+.++ .+......
T Consensus        78 ~~~~~lg~~~eA~~~~~~al~l~P-~~~~~~~~  109 (356)
T PLN03088         78 TACMKLEEYQTAKAALEKGASLAP-GDSRFTKL  109 (356)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhCC-CCHHHHHH
Confidence            666666666666666666666555 44443333

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.05  E-value=6.3e-06  Score=41.91  Aligned_cols=28  Identities=36%  Similarity=0.555  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 018582          199 VTNVMIGAYAKEGRLENAEELKERARRR  226 (353)
Q Consensus       199 ~~~~li~~~~~~g~~~~a~~~~~~~~~~  226 (353)
                      +|+.++++|++.|++++|.++|++|.+.
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~   29 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRER   29 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence            3444444444444444444444444443

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.04  E-value=0.00029  Score=57.39  Aligned_cols=145  Identities=17%  Similarity=0.198  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh-cCChhHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 018582          128 SAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVN-LKDLPGAEKCFKEWESGCATYDIRVTNVMIGA  206 (353)
Q Consensus       128 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  206 (353)
                      .+|..+++..-+.+..+.|..+|.+.++.+. .+...|......-.. .++.+.|.++|+...+.- ..+...|...++.
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF-PSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence            4677777777777778888888888764322 234455544444333 456666888888877653 4477777777888


Q ss_pred             HHhcCChHHHHHHHHHHHhcCCCCCh---hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHH
Q 018582          207 YAKEGRLENAEELKERARRRGADPNA---KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHF  283 (353)
Q Consensus       207 ~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  283 (353)
                      +...|+.+.|..+|++.... +.++.   ..|...++.=.+.|+.+.+.++.+++.+.-        |+...+..++.-|
T Consensus        80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~--------~~~~~~~~f~~ry  150 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF--------PEDNSLELFSDRY  150 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT--------TTS-HHHHHHCCT
T ss_pred             HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh--------hhhhHHHHHHHHh
Confidence            88888888888888887765 22222   367777777777788888888887777764        5544444444433

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.03  E-value=0.0031  Score=50.07  Aligned_cols=181  Identities=11%  Similarity=0.047  Sum_probs=116.1

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 018582           59 YNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTF---SNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLIT  135 (353)
Q Consensus        59 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  135 (353)
                      +-.....+...|++++|.+.|+.+...  .+-+....   -.++.++.+.++++.|...+++..+..+.-....|...+.
T Consensus        35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~  112 (243)
T PRK10866         35 IYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMR  112 (243)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHH
Confidence            334455567889999999999999986  33333332   3567888999999999999999988766544445555554


Q ss_pred             HHHc--c---------------CCH---HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 018582          136 LYGQ--T---------------GNL---SEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATY  195 (353)
Q Consensus       136 ~~~~--~---------------~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  195 (353)
                      +.+.  .               .+.   .+|+..|+.+.+.-|  ++             .-..+|...+..+...    
T Consensus       113 g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP--~S-------------~ya~~A~~rl~~l~~~----  173 (243)
T PRK10866        113 GLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYP--NS-------------QYTTDATKRLVFLKDR----  173 (243)
T ss_pred             HHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCc--CC-------------hhHHHHHHHHHHHHHH----
Confidence            4431  1               111   345555555555532  22             2234444444433321    


Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCChhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 018582          196 DIRVTNVMIGAYAKEGRLENAEELKERARRR--GADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAID  260 (353)
Q Consensus       196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  260 (353)
                      -...-..+...|.+.|.+..|..-++.+.+.  +.+........++.+|...|..++|.++...+..
T Consensus       174 la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~  240 (243)
T PRK10866        174 LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA  240 (243)
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence            0111125677889999999999999998865  2222345666788899999999999887766543

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.00  E-value=0.00045  Score=56.23  Aligned_cols=145  Identities=19%  Similarity=0.254  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHH-HHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 018582           93 TTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITL-YGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQV  171 (353)
Q Consensus        93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  171 (353)
                      .+|..+++..-+.+..+.|..+|.+..+.+. .+...|-..... |...++.+.|.++|+...+.- ..+...|...++.
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF-PSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence            4788899999999999999999999985433 244455555544 334677788999999988773 3577788899999


Q ss_pred             HHhcCChhHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 018582          172 LVNLKDLPGAEKCFKEWESGCATYD---IRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYY  242 (353)
Q Consensus       172 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~  242 (353)
                      +...++.+.|..+|++.... +.++   ...|...++.-.+.|+.+.+.++.+++.+.  -|+...+..+++-|
T Consensus        80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry  150 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY  150 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred             HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence            99999999999999999876 3323   358999999999999999999999999886  44544444454444

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.00  E-value=0.00057  Score=55.84  Aligned_cols=128  Identities=15%  Similarity=0.119  Sum_probs=58.1

Q ss_pred             HHHHHHcc-CCHHHHHHHHHHHHHh----CCCCC--hhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-----CcHH-H
Q 018582          133 LITLYGQT-GNLSEVYRIWRSLRLA----FPNTA--NISYLNMIQVLVNLKDLPGAEKCFKEWESGCAT-----YDIR-V  199 (353)
Q Consensus       133 l~~~~~~~-~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~-~  199 (353)
                      +...|... |++++|++.|++..+.    + .+.  ...+..+...+.+.|++++|.++|+++......     .+.. .
T Consensus       120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~  198 (282)
T PF14938_consen  120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY  198 (282)
T ss_dssp             HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence            33444444 5666666666654332    2 111  224455566666666666666666665543211     1121 2


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhcC--CCCC--hhhHHHHHHHHHc--cCChHHHHHHHHHHHHc
Q 018582          200 TNVMIGAYAKEGRLENAEELKERARRRG--ADPN--AKTWEIFSDYYLR--NGDMKLAVDCLEKAIDT  261 (353)
Q Consensus       200 ~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~p~--~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~  261 (353)
                      +...+-++...|++..|.+.+++.....  +..+  ......|+.++-.  ...+..++.-|+.+.+.
T Consensus       199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~l  266 (282)
T PF14938_consen  199 FLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRL  266 (282)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS--
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCcc
Confidence            2223334455566666666666665431  1111  2334445555533  23355555555554444

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.98  E-value=0.00019  Score=54.04  Aligned_cols=87  Identities=15%  Similarity=0.258  Sum_probs=56.8

Q ss_pred             ChhHHHHHHHHHHhc-----CChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc----------------CChHHHHHH
Q 018582          161 ANISYLNMIQVLVNL-----KDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKE----------------GRLENAEEL  219 (353)
Q Consensus       161 ~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------------g~~~~a~~~  219 (353)
                      +..+|..+++.+.+.     |+.+-....+..|.+.|+..|..+|+.|++.+=+.                .+-+-|+++
T Consensus        46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l  125 (228)
T PF06239_consen   46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL  125 (228)
T ss_pred             cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence            444444444444332     44444455555555555555555555555554331                245678999


Q ss_pred             HHHHHhcCCCCChhhHHHHHHHHHccCC
Q 018582          220 KERARRRGADPNAKTWEIFSDYYLRNGD  247 (353)
Q Consensus       220 ~~~~~~~~~~p~~~~~~~li~~~~~~~~  247 (353)
                      +++|...|+.||..++..+++.+.+.+.
T Consensus       126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  126 LEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             HHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence            9999999999999999999999987765

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.96  E-value=0.00046  Score=49.60  Aligned_cols=93  Identities=14%  Similarity=0.075  Sum_probs=60.7

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccC
Q 018582          167 NMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNG  246 (353)
Q Consensus       167 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~  246 (353)
                      .+...+...|++++|.++|+.+....+. +..-|..|.-++...|++++|+..|.......+ -|+..+-.+..++...|
T Consensus        40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG  117 (157)
T PRK15363         40 RYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACD  117 (157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcC
Confidence            3444555667777777777766665533 556666666667777777777777777666543 35666666677777777


Q ss_pred             ChHHHHHHHHHHHHc
Q 018582          247 DMKLAVDCLEKAIDT  261 (353)
Q Consensus       247 ~~~~a~~~~~~~~~~  261 (353)
                      +.+.|.+.|+..+..
T Consensus       118 ~~~~A~~aF~~Ai~~  132 (157)
T PRK15363        118 NVCYAIKALKAVVRI  132 (157)
T ss_pred             CHHHHHHHHHHHHHH
Confidence            777777777766655

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.96  E-value=0.00034  Score=52.33  Aligned_cols=60  Identities=7%  Similarity=-0.124  Sum_probs=24.0

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHhCCCC--ChhHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 018582          131 QFLITLYGQTGNLSEVYRIWRSLRLAFPNT--ANISYLNMIQVLVNLKDLPGAEKCFKEWES  190 (353)
Q Consensus       131 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  190 (353)
                      ..+...+...|++++|+..|++.......+  ...++..+...+...|++++|...+++...
T Consensus        39 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~  100 (168)
T CHL00033         39 YRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE  100 (168)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            333333444444444444444443322111  112334444444444444444444444443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.96  E-value=0.00022  Score=53.36  Aligned_cols=96  Identities=15%  Similarity=0.018  Sum_probs=57.0

Q ss_pred             cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHH
Q 018582           56 SYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAA-DWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLI  134 (353)
Q Consensus        56 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  134 (353)
                      ...|..+...+...|++++|...|++.......++ ...++..+..++...|++++|+..++......+. ...++..+.
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la  113 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMA  113 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHH
Confidence            33455556666667777777777777765421111 2245666777777777777777777776654322 334455555


Q ss_pred             HHHH-------ccCCHHHHHHHHHH
Q 018582          135 TLYG-------QTGNLSEVYRIWRS  152 (353)
Q Consensus       135 ~~~~-------~~~~~~~a~~~~~~  152 (353)
                      ..+.       ..|+++.|+..+++
T Consensus       114 ~i~~~~~~~~~~~g~~~~A~~~~~~  138 (168)
T CHL00033        114 VICHYRGEQAIEQGDSEIAEAWFDQ  138 (168)
T ss_pred             HHHHHhhHHHHHcccHHHHHHHHHH
Confidence            5555       66777755555554

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.95  E-value=0.0002  Score=56.43  Aligned_cols=125  Identities=20%  Similarity=0.196  Sum_probs=91.5

Q ss_pred             HHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChH
Q 018582          170 QVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMK  249 (353)
Q Consensus       170 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~  249 (353)
                      .-..+.+++.+|...|.+.++..+. |.+.|..-..+|++.|.++.|++=.+..+..+.. ...+|..|..+|...|+++
T Consensus        89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~  166 (304)
T KOG0553|consen   89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYE  166 (304)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHH
Confidence            3467788999999999999988755 8888888899999999999999888887765321 3578899999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHH-HhcCChh---hHHHHHHHHHhcCC
Q 018582          250 LAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHF-EQEKDVD---GAEGFLEILKKAVD  304 (353)
Q Consensus       250 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~---~a~~~~~~~~~~~~  304 (353)
                      +|++.|++.++..        |+-.+|..=+... .+.+...   .+..-++.....+.
T Consensus       167 ~A~~aykKaLeld--------P~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~  217 (304)
T KOG0553|consen  167 EAIEAYKKALELD--------PDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGA  217 (304)
T ss_pred             HHHHHHHhhhccC--------CCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccC
Confidence            9999999988876        7777766555433 3333333   33344444434444

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.93  E-value=0.00034  Score=50.24  Aligned_cols=92  Identities=13%  Similarity=0.074  Sum_probs=52.4

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcc
Q 018582           61 VWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQT  140 (353)
Q Consensus        61 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  140 (353)
                      .+...+...|++++|.++|+.+...  .+-+..-|-.|..++-..|++++|+..|.......+. |+.++-.+..++...
T Consensus        40 ~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~l  116 (157)
T PRK15363         40 RYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLAC  116 (157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHc
Confidence            3344445556666666666666554  3444444555666666666666666666665555443 555555566666666


Q ss_pred             CCHHHHHHHHHHHHH
Q 018582          141 GNLSEVYRIWRSLRL  155 (353)
Q Consensus       141 ~~~~~a~~~~~~~~~  155 (353)
                      |+.+.|.+.|+....
T Consensus       117 G~~~~A~~aF~~Ai~  131 (157)
T PRK15363        117 DNVCYAIKALKAVVR  131 (157)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            666666666665443

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.91  E-value=0.0018  Score=57.30  Aligned_cols=138  Identities=14%  Similarity=-0.009  Sum_probs=92.0

Q ss_pred             CCCChhHHHHHHHHHHhcC-----ChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC--------ChHHHHHHHHHHH
Q 018582          158 PNTANISYLNMIQVLVNLK-----DLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEG--------RLENAEELKERAR  224 (353)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~~~  224 (353)
                      ...+...|...+.+.....     +.+.|..+|++..+..+. +...|..+..++....        +...+.+...+..
T Consensus       333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~  411 (517)
T PRK10153        333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV  411 (517)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence            4456677877777654332     356788888888887644 5556665544443321        1223333333332


Q ss_pred             hc-CCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 018582          225 RR-GADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAV  303 (353)
Q Consensus       225 ~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  303 (353)
                      .. ....+...|..+.-.....|++++|...++++...+        |+...|..+...+...|+.++|...+++....+
T Consensus       412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~  483 (517)
T PRK10153        412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--------MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR  483 (517)
T ss_pred             hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            22 123344667766666667788999999999988877        777888888888888999999999888888877


Q ss_pred             C
Q 018582          304 D  304 (353)
Q Consensus       304 ~  304 (353)
                      |
T Consensus       484 P  484 (517)
T PRK10153        484 P  484 (517)
T ss_pred             C
Confidence            6

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.89  E-value=0.0017  Score=57.47  Aligned_cols=138  Identities=12%  Similarity=0.085  Sum_probs=98.2

Q ss_pred             cCCCCHHHHHHHHHHHHcc--C---CHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC--------ChhHHHHHHHHH
Q 018582          122 NAHRDLSAYQFLITLYGQT--G---NLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLK--------DLPGAEKCFKEW  188 (353)
Q Consensus       122 ~~~~~~~~~~~l~~~~~~~--~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~  188 (353)
                      ..+.+..+|...+++....  +   ....|..+|++..+..+. ....|..+..++....        +...+.+...+.
T Consensus       332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a  410 (517)
T PRK10153        332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI  410 (517)
T ss_pred             cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence            3456788999988875442  2   367899999999887543 3445555444443321        122333444433


Q ss_pred             Hhc-CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582          189 ESG-CATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG  262 (353)
Q Consensus       189 ~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  262 (353)
                      ... ....+...|.++.-.....|++++|...+++....+  |+...|..+...+...|+.++|.+.+++....+
T Consensus       411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~  483 (517)
T PRK10153        411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR  483 (517)
T ss_pred             hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            332 123356778888777777899999999999999874  688899999999999999999999999999887

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.89  E-value=0.0063  Score=47.04  Aligned_cols=183  Identities=19%  Similarity=0.224  Sum_probs=94.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 018582           98 LASIYVEAGLFEKAERALKELENRNAHR--DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNL  175 (353)
Q Consensus        98 l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  175 (353)
                      ....+.+.|++++|.+.|+.+....+..  -..+.-.++.++.+.|+++.|...+++.....+.-....+...+.+.+..
T Consensus        11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~   90 (203)
T PF13525_consen   11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY   90 (203)
T ss_dssp             HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence            4445556777777777777776653331  13345556677777777777777777777665433333333333222211


Q ss_pred             CChhHHHHHHHHHHhcCCC---CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHH
Q 018582          176 KDLPGAEKCFKEWESGCAT---YDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAV  252 (353)
Q Consensus       176 ~~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~  252 (353)
                      .......     ....+..   --...+..++.-|=......+|...+..+.+.    =...--.+...|.+.|.+..|.
T Consensus        91 ~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y~aA~  161 (203)
T PF13525_consen   91 KQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKYKAAI  161 (203)
T ss_dssp             HHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-HHHHH
T ss_pred             HhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccHHHHH
Confidence            1111100     0000000   00123334444444455556666655555432    0111223567788999999999


Q ss_pred             HHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHH
Q 018582          253 DCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAE  293 (353)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  293 (353)
                      .-++.+++.-..    ..........++.++.+.|..+.+.
T Consensus       162 ~r~~~v~~~yp~----t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  162 IRFQYVIENYPD----TPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HHHHHHHHHSTT----SHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHHHHCCC----CchHHHHHHHHHHHHHHhCChHHHH
Confidence            999999998511    0112356678888898988877544

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.89  E-value=0.00079  Score=50.87  Aligned_cols=105  Identities=18%  Similarity=0.307  Sum_probs=65.4

Q ss_pred             CCcHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChh
Q 018582           89 AADWTTFSNLASIYVE-----AGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANI  163 (353)
Q Consensus        89 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  163 (353)
                      ..+..+|..+++.|.+     .|..+-....+..|.+-|+..|..+|+.|++.+=+ |.+-               |.. 
T Consensus        44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n-  106 (228)
T PF06239_consen   44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRN-  106 (228)
T ss_pred             cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------ccc-
Confidence            4566677777777664     36677777788888888888888888888877654 2221               111 


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC
Q 018582          164 SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGR  212 (353)
Q Consensus       164 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  212 (353)
                      .+..+...|  -.+-+-|.+++++|...|+-||..++..+++.+++.+.
T Consensus       107 ~fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  107 FFQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             HHHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence            111111111  12344567777777777777777777777777766553

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.87  E-value=0.00018  Score=56.69  Aligned_cols=101  Identities=18%  Similarity=0.098  Sum_probs=87.2

Q ss_pred             HHHccCChHHHHHHHHHHHHcCCCCCCCCcc-cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHH
Q 018582          241 YYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYA  319 (353)
Q Consensus       241 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  319 (353)
                      -+.+.+++++|+..|.+.++..        | |...|..-..+|.+.|.++.|.+-.+..+..++ ....+|..|..+|.
T Consensus        90 ~~m~~~~Y~eAv~kY~~AI~l~--------P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp-~yskay~RLG~A~~  160 (304)
T KOG0553|consen   90 KLMKNKDYQEAVDKYTEAIELD--------PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP-HYSKAYGRLGLAYL  160 (304)
T ss_pred             HHHHhhhHHHHHHHHHHHHhcC--------CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh-HHHHHHHHHHHHHH
Confidence            3567889999999999999986        5 567788889999999999999999999999998 88899999999999


Q ss_pred             HcCCChHHHHHHHHhCCCccCHhHHHHHHHH
Q 018582          320 AAGRTSPVMLRRLKMEKVEVSEASKKLLEAI  350 (353)
Q Consensus       320 ~~g~~~~~~~~~m~~~~~~p~~~~~~~l~~~  350 (353)
                      ..|++++++-..-+...+.|+..++..=+.+
T Consensus       161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~  191 (304)
T KOG0553|consen  161 ALGKYEEAIEAYKKALELDPDNESYKSNLKI  191 (304)
T ss_pred             ccCcHHHHHHHHHhhhccCCCcHHHHHHHHH
Confidence            9999888887777888899999887655443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.81  E-value=0.0021  Score=44.49  Aligned_cols=88  Identities=16%  Similarity=0.117  Sum_probs=39.7

Q ss_pred             HHHhcCChhHHHHHHHHHHHcCCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHcc
Q 018582           65 ALAAVNDISGAERVIEEMKRDGRVAAD--WTTFSNLASIYVEAGLFEKAERALKELENRNAHR--DLSAYQFLITLYGQT  140 (353)
Q Consensus        65 ~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~  140 (353)
                      ++-..|+.++|..+|++....| ....  ...+-.+...+...|++++|..+|++.....+.+  +......+..++...
T Consensus        10 a~d~~G~~~~Ai~~Y~~Al~~g-L~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~   88 (120)
T PF12688_consen   10 AHDSLGREEEAIPLYRRALAAG-LSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL   88 (120)
T ss_pred             HHHhcCCHHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence            3444555555555555555544 2222  2233344555555555555555555554432210  111112222344455


Q ss_pred             CCHHHHHHHHHHH
Q 018582          141 GNLSEVYRIWRSL  153 (353)
Q Consensus       141 ~~~~~a~~~~~~~  153 (353)
                      |+.++|++.+-..
T Consensus        89 gr~~eAl~~~l~~  101 (120)
T PF12688_consen   89 GRPKEALEWLLEA  101 (120)
T ss_pred             CCHHHHHHHHHHH
Confidence            5555555555443

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.81  E-value=0.0031  Score=52.22  Aligned_cols=82  Identities=10%  Similarity=0.007  Sum_probs=40.3

Q ss_pred             HccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcC
Q 018582          243 LRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAG  322 (353)
Q Consensus       243 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  322 (353)
                      .+.|.+..|.+.+.+.+.....   ...|+...|........+.|+..+|..--++..+.++ .-...|..-..++...+
T Consensus       260 fk~G~y~~A~E~Yteal~idP~---n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~-syikall~ra~c~l~le  335 (486)
T KOG0550|consen  260 FKNGNYRKAYECYTEALNIDPS---NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS-SYIKALLRRANCHLALE  335 (486)
T ss_pred             hhccchhHHHHHHHHhhcCCcc---ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH-HHHHHHHHHHHHHHHHH
Confidence            3556666666666665554311   1224445555555555566666666666655555443 22333333333333334


Q ss_pred             CChHHH
Q 018582          323 RTSPVM  328 (353)
Q Consensus       323 ~~~~~~  328 (353)
                      +|.+++
T Consensus       336 ~~e~AV  341 (486)
T KOG0550|consen  336 KWEEAV  341 (486)
T ss_pred             HHHHHH
Confidence            444444

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.80  E-value=0.00017  Score=44.69  Aligned_cols=66  Identities=26%  Similarity=0.363  Sum_probs=55.8

Q ss_pred             ChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcc-cHHHHHHHHHHHHhcC-ChhhHHHHHHHHHhcCC
Q 018582          231 NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEK-DVDGAEGFLEILKKAVD  304 (353)
Q Consensus       231 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~  304 (353)
                      +..+|..+...+...|++++|+..|++.++..        | +...|..+..++.+.| ++++|.+.+++..+.+|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--------p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--------PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--------TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            45678888888999999999999999999986        5 5778888888999998 79999999998887654

...

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.79  E-value=0.00018  Score=43.98  Aligned_cols=59  Identities=20%  Similarity=0.250  Sum_probs=50.9

Q ss_pred             HHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcc-cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 018582          238 FSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD  304 (353)
Q Consensus       238 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  304 (353)
                      +...+.+.|++++|.+.|+.+++..        | +...+..+..++...|++++|...|+++.+..|
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~--------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P   62 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQD--------PDNPEAWYLLGRILYQQGRYDEALAYYERALELDP   62 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCS--------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            4567888999999999999999987        5 578888899999999999999999999988776

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.78  E-value=0.0028  Score=43.89  Aligned_cols=57  Identities=25%  Similarity=0.191  Sum_probs=28.0

Q ss_pred             HHHHhcCChHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 018582          205 GAYAKEGRLENAEELKERARRRGADPN--AKTWEIFSDYYLRNGDMKLAVDCLEKAIDT  261 (353)
Q Consensus       205 ~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  261 (353)
                      .++-..|+.++|..+|++....|....  ...+-.+..++...|++++|..++++....
T Consensus         9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~   67 (120)
T PF12688_consen    9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE   67 (120)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            344445555555555555555443322  123334444555555555555555555544

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.76  E-value=0.00012  Score=45.31  Aligned_cols=61  Identities=30%  Similarity=0.366  Sum_probs=50.2

Q ss_pred             HccCChHHHHHHHHHHHHcCCCCCCCCcc-cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhH
Q 018582          243 LRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFE  312 (353)
Q Consensus       243 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  312 (353)
                      ...|++++|+++|+.+....        | +...+..+..+|.+.|++++|..+++.+....+ .++..+.
T Consensus         2 l~~~~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~   63 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRN--------PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP-DNPEYQQ   63 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHT--------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT-THHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CHHHHHH
Confidence            46789999999999999986        5 677888899999999999999999999998886 4444333

...

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.75  E-value=0.0038  Score=49.70  Aligned_cols=106  Identities=11%  Similarity=0.024  Sum_probs=84.3

Q ss_pred             HHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCCC
Q 018582          154 RLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEG---RLENAEELKERARRRGADP  230 (353)
Q Consensus       154 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~p  230 (353)
                      ...++ -|...|..|..+|...|+.+.|..-|....+... +|...+..+..++....   .-.++..+|+++..... -
T Consensus       149 L~~nP-~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~  225 (287)
T COG4235         149 LQQNP-GDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-A  225 (287)
T ss_pred             HHhCC-CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-c
Confidence            33444 4778899999999999999999999999887653 37777777777665432   45688999999988743 3


Q ss_pred             ChhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582          231 NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG  262 (353)
Q Consensus       231 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  262 (353)
                      |+.+...+...+...|++.+|...|+.|.+..
T Consensus       226 ~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l  257 (287)
T COG4235         226 NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL  257 (287)
T ss_pred             cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence            66777778888999999999999999999986

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.74  E-value=0.006  Score=47.52  Aligned_cols=57  Identities=9%  Similarity=0.093  Sum_probs=26.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 018582           98 LASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLR  154 (353)
Q Consensus        98 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  154 (353)
                      ++.++.-.|.+.-....+.+.++..++.++.....|.+.-.+.|+.+.|...|+...
T Consensus       183 ~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ve  239 (366)
T KOG2796|consen  183 MANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVE  239 (366)
T ss_pred             HHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            333333444444444444444444444444444444444444555555555554443

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.73  E-value=0.00016  Score=44.75  Aligned_cols=53  Identities=30%  Similarity=0.506  Sum_probs=26.4

Q ss_pred             hcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582          209 KEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG  262 (353)
Q Consensus       209 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  262 (353)
                      ..|++++|.++|+++....+. +...+..+..+|.+.|++++|.++++++....
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~   55 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQD   55 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred             hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            345555555555555544222 44444455555555555555555555555544

...

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.71  E-value=0.0003  Score=43.00  Aligned_cols=53  Identities=15%  Similarity=0.236  Sum_probs=21.9

Q ss_pred             HHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 018582          101 IYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLR  154 (353)
Q Consensus       101 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  154 (353)
                      .+.+.|++++|.+.|+++.+..+. +...+..+...+...|++++|...|+++.
T Consensus         6 ~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~   58 (65)
T PF13432_consen    6 ALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERAL   58 (65)
T ss_dssp             HHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            334444444444444444443322 33344444444444444444444444443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.71  E-value=0.00038  Score=43.12  Aligned_cols=57  Identities=23%  Similarity=0.339  Sum_probs=21.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccC-CHHHHHHHHHH
Q 018582           95 FSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTG-NLSEVYRIWRS  152 (353)
Q Consensus        95 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~  152 (353)
                      |..+...+.+.|++++|+..|++..+..+. +...|..+..+|...| ++++|++.+++
T Consensus         6 ~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~   63 (69)
T PF13414_consen    6 WYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEK   63 (69)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence            333333334444444444444443333222 2333333333333333 33444433333

...

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=97.69  E-value=0.001  Score=46.46  Aligned_cols=91  Identities=10%  Similarity=0.078  Sum_probs=63.8

Q ss_pred             hhHHHHHHHHHccCChHHHHHHHHHHHHcC---------CCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHh-c
Q 018582          233 KTWEIFSDYYLRNGDMKLAVDCLEKAIDTG---------RGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKK-A  302 (353)
Q Consensus       233 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~  302 (353)
                      .++..++.++++.|+.+....+++..-.-+         .++.++..|+..+..+++.+|+..|++..|.++.+.+.+ -
T Consensus         3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y   82 (126)
T PF12921_consen    3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY   82 (126)
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence            344455555555555555555544432221         445556889999999999999999999999999999877 3


Q ss_pred             CCCCChhhhHHHHHHHHHcCC
Q 018582          303 VDDLGVEVFEPLIRTYAAAGR  323 (353)
Q Consensus       303 ~~~~~~~~~~~l~~~~~~~g~  323 (353)
                      +++.+..+|..|+.-....-+
T Consensus        83 ~I~i~~~~W~~Ll~W~~v~s~  103 (126)
T PF12921_consen   83 PIPIPKEFWRRLLEWAYVLSS  103 (126)
T ss_pred             CCCCCHHHHHHHHHHHHHhcC
Confidence            455567889999887655544

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.67  E-value=0.0076  Score=48.07  Aligned_cols=123  Identities=14%  Similarity=0.081  Sum_probs=93.7

Q ss_pred             HHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc---CChhHHHHHHHHHH
Q 018582          113 RALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNL---KDLPGAEKCFKEWE  189 (353)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~  189 (353)
                      .-++.-...++. |...|-.|...|...|+.+.|...|....+..+ ++...+..+..++...   ....++..+|+++.
T Consensus       143 a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al  220 (287)
T COG4235         143 ARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQAL  220 (287)
T ss_pred             HHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence            333443444554 889999999999999999999999999877643 3556666666655443   34567999999999


Q ss_pred             hcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 018582          190 SGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSD  240 (353)
Q Consensus       190 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~  240 (353)
                      +.++. |+.+...|...+...|++.+|...|+.|.+..  |....+..+|.
T Consensus       221 ~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie  268 (287)
T COG4235         221 ALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE  268 (287)
T ss_pred             hcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence            98755 88888889999999999999999999999873  33445555554

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.66  E-value=0.016  Score=45.32  Aligned_cols=133  Identities=14%  Similarity=0.072  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHH-----H
Q 018582          129 AYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNV-----M  203 (353)
Q Consensus       129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l  203 (353)
                      ..+.++..+...|.+.-...++++.++..++.++...+.+++.-.+.|+.+.|...|+++.+..-..|...++.     .
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            34566777777888999999999999988777888889999999999999999999998876433334333333     3


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582          204 IGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG  262 (353)
Q Consensus       204 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  262 (353)
                      ...|...+++.+|...+.++...+.. |+...|.-.-+..-.|+...|++.++.|....
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~  316 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQD  316 (366)
T ss_pred             hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            34566678899999999988876422 45555555555566789999999999999876

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.58  E-value=0.0022  Score=51.37  Aligned_cols=102  Identities=10%  Similarity=0.056  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc
Q 018582          197 IRVTNVMIGAYAKEGRLENAEELKERARRRGADPNA----KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS  272 (353)
Q Consensus       197 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  272 (353)
                      ...|...+..+.+.|++++|...|+.+.+.-  |+.    ..+-.+...|...|++++|...|+.+.+....  +  ...
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~--s--~~~  216 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK--S--PKA  216 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--C--cch
Confidence            3445555555566788899998888888763  332    45667778888889999999999998876411  0  112


Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 018582          273 SETIRTFMRHFEQEKDVDGAEGFLEILKKAVD  304 (353)
Q Consensus       273 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  304 (353)
                      ...+..+...+...|+.+.|.++++.+.+..|
T Consensus       217 ~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP  248 (263)
T PRK10803        217 ADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYP  248 (263)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            45555666777788999999999998888765

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.57  E-value=0.0045  Score=45.03  Aligned_cols=68  Identities=25%  Similarity=0.321  Sum_probs=36.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH-----HhCCCCChhH
Q 018582           96 SNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLR-----LAFPNTANIS  164 (353)
Q Consensus        96 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~  164 (353)
                      ..++..+...|+++.|..+.+.+....+. +...|..+|.+|...|+..+|.+.|+.+.     +-|+.|+..+
T Consensus        66 ~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~  138 (146)
T PF03704_consen   66 ERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET  138 (146)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence            34555566666666666666666665443 56666666666666666666666666543     2355555543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.57  E-value=0.0011  Score=54.87  Aligned_cols=271  Identities=13%  Similarity=0.031  Sum_probs=167.2

Q ss_pred             HHHHhcCCcchHHHHHHHHHHCCCCCCc----chHHHHHHHHHhcCChhHHHHHHHHHH----HcCCCCCcHHHHHHHHH
Q 018582           29 TLYAKTGHPEKIPAIIQEMKASSIMPDS----YTYNVWMRALAAVNDISGAERVIEEMK----RDGRVAADWTTFSNLAS  100 (353)
Q Consensus        29 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~l~~  100 (353)
                      .-+++.|+......+|+...+.|. -|.    ..|..+.++|.-.+++++|+++...=.    ..|.-.-...+...|.+
T Consensus        25 ERLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN  103 (639)
T KOG1130|consen   25 ERLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN  103 (639)
T ss_pred             HHHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence            358899999999999999998772 232    356677778888888999988654211    11111112223334556


Q ss_pred             HHHhcCCHHHHHHHHHHH----HHccCC-CCHHHHHHHHHHHHccCCH--------------------HHHHHHHHHHHH
Q 018582          101 IYVEAGLFEKAERALKEL----ENRNAH-RDLSAYQFLITLYGQTGNL--------------------SEVYRIWRSLRL  155 (353)
Q Consensus       101 ~~~~~~~~~~a~~~~~~~----~~~~~~-~~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~~~~~  155 (353)
                      .+--.|.+++|.-...+-    .+.|-. ....++-.+...|...|+.                    +.|.++|.+-.+
T Consensus       104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~  183 (639)
T KOG1130|consen  104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE  183 (639)
T ss_pred             hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence            666667777776543322    111111 1234555566666655542                    344445443211


Q ss_pred             ----hCC-CCChhHHHHHHHHHHhcCChhHHHHHHHHHH----hcCC-CCcHHHHHHHHHHHHhcCChHHHHHHHHHHH-
Q 018582          156 ----AFP-NTANISYLNMIQVLVNLKDLPGAEKCFKEWE----SGCA-TYDIRVTNVMIGAYAKEGRLENAEELKERAR-  224 (353)
Q Consensus       156 ----~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-  224 (353)
                          .|- ..-...|..+.+.|.-.|+++.|....+.-.    +.|- ......+..|..++.-.|+++.|.+.|+... 
T Consensus       184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~  263 (639)
T KOG1130|consen  184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN  263 (639)
T ss_pred             HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence                111 1122456667777777889999887766532    2221 1234677888999999999999999888644 


Q ss_pred             ---hcCC-CCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 018582          225 ---RRGA-DPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILK  300 (353)
Q Consensus       225 ---~~~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  300 (353)
                         +.|- .....+.-+|...|.-..++++|+.++.+-+...-+.. ...-....+.+|..+|...|..+.|+.+.+.-+
T Consensus       264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~-DriGe~RacwSLgna~~alg~h~kAl~fae~hl  342 (639)
T KOG1130|consen  264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELE-DRIGELRACWSLGNAFNALGEHRKALYFAELHL  342 (639)
T ss_pred             HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence               2221 12344556778888888899999999887554310000 011346788999999999999999998877655


Q ss_pred             h
Q 018582          301 K  301 (353)
Q Consensus       301 ~  301 (353)
                      +
T Consensus       343 ~  343 (639)
T KOG1130|consen  343 R  343 (639)
T ss_pred             H
Confidence            4

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.53  E-value=0.025  Score=43.76  Aligned_cols=182  Identities=13%  Similarity=0.072  Sum_probs=102.7

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHHhCCCC--ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 018582          129 AYQFLITLYGQTGNLSEVYRIWRSLRLAFPNT--ANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGA  206 (353)
Q Consensus       129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  206 (353)
                      ..-.....+...|++.+|.+.|+.+....+..  .....-.++.++.+.|+++.|...++...+.-+......+...+.+
T Consensus         7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g   86 (203)
T PF13525_consen    7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLG   86 (203)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHH
Confidence            34445566778899999999999998875432  2235567788889999999999999998876544333333333333


Q ss_pred             HHhcCChHHHHHHHHHHHhcCCC---CChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHH
Q 018582          207 YAKEGRLENAEELKERARRRGAD---PNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHF  283 (353)
Q Consensus       207 ~~~~g~~~~a~~~~~~~~~~~~~---p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  283 (353)
                      .+.........     .......   --...+..++.-|-...-..+|...+..+...         .-. .--.+.+-|
T Consensus        87 ~~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---------la~-~e~~ia~~Y  151 (203)
T PF13525_consen   87 LSYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---------LAE-HELYIARFY  151 (203)
T ss_dssp             HHHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---------HHH-HHHHHHHHH
T ss_pred             HHHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---------HHH-HHHHHHHHH
Confidence            22211111110     0000000   00123444555555555566666655555443         111 112356679


Q ss_pred             HhcCChhhHHHHHHHHHhcCCCC--ChhhhHHHHHHHHHcCCCh
Q 018582          284 EQEKDVDGAEGFLEILKKAVDDL--GVEVFEPLIRTYAAAGRTS  325 (353)
Q Consensus       284 ~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~  325 (353)
                      .+.|.+..|..-++.+++.-|..  .......++.+|.+.|...
T Consensus       152 ~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~  195 (203)
T PF13525_consen  152 YKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ  195 (203)
T ss_dssp             HCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred             HHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence            99999999999999999876521  2245677888888888743

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.50  E-value=0.0057  Score=49.07  Aligned_cols=98  Identities=10%  Similarity=0.086  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--CcHHHHHHHH
Q 018582          129 AYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTA--NISYLNMIQVLVNLKDLPGAEKCFKEWESGCAT--YDIRVTNVMI  204 (353)
Q Consensus       129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li  204 (353)
                      .|...+....+.|++++|...|+.+....+...  ...+..+..+|...|++++|...|+.+.+..+.  .....+-.+.
T Consensus       145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg  224 (263)
T PRK10803        145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG  224 (263)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence            344444444555677777777777666543221  235556666777777777777777776643221  1233444455


Q ss_pred             HHHHhcCChHHHHHHHHHHHhc
Q 018582          205 GAYAKEGRLENAEELKERARRR  226 (353)
Q Consensus       205 ~~~~~~g~~~~a~~~~~~~~~~  226 (353)
                      ..+...|+.++|..+|+++.+.
T Consensus       225 ~~~~~~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        225 VIMQDKGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHH
Confidence            5666677777777777777665

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.42  E-value=0.034  Score=49.61  Aligned_cols=234  Identities=12%  Similarity=0.047  Sum_probs=131.2

Q ss_pred             CCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHH----------HHHhcCChhHHHHHHHHHHHcCCC
Q 018582           19 FSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMR----------ALAAVNDISGAERVIEEMKRDGRV   88 (353)
Q Consensus        19 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~----------~~~~~~~~~~a~~~~~~~~~~~~~   88 (353)
                      |.+..|..|.......-.++.|...|-+....   |.......+-.          .-+--|.+++|.++|-++-++.  
T Consensus       690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD--  764 (1189)
T KOG2041|consen  690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD--  764 (1189)
T ss_pred             CchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh--
Confidence            66667777777666666666666666544331   12111111111          1122366777777776665543  


Q ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhH
Q 018582           89 AADWTTFSNLASIYVEAGLFEKAERALKELENRNAHR----DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANIS  164 (353)
Q Consensus        89 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  164 (353)
                              ..+..+.+.|++-...++++.   .|-..    -..+|+.+...+.....|++|.+.|..-.      +.  
T Consensus       765 --------LAielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~------~~--  825 (1189)
T KOG2041|consen  765 --------LAIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG------DT--  825 (1189)
T ss_pred             --------hhHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------ch--
Confidence                    355666666776665555442   11111    13466777777777777777777766431      11  


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHc
Q 018582          165 YLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLR  244 (353)
Q Consensus       165 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~  244 (353)
                       ...+.++.+...+++.+.+...+     +-+....-.+.+++.+.|.-++|.+.|-+-.    .|.     ..+..|..
T Consensus       826 -e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~pk-----aAv~tCv~  890 (1189)
T KOG2041|consen  826 -ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LPK-----AAVHTCVE  890 (1189)
T ss_pred             -HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhcc----CcH-----HHHHHHHH
Confidence             23455566666666555554443     3355566678888888888888888775532    122     34566777


Q ss_pred             cCChHHHHHHHHHHHHcCCCCCCCCcccHHHH--------------HHHHHHHHhcCChhhHHHHHHHHHh
Q 018582          245 NGDMKLAVDCLEKAIDTGRGDGGKWVPSSETI--------------RTFMRHFEQEKDVDGAEGFLEILKK  301 (353)
Q Consensus       245 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~l~~~~~~~~~~~~a~~~~~~~~~  301 (353)
                      .++|.+|.++-++..-          |...+.              .--|..+.+.|..-.|.+++.+|.+
T Consensus       891 LnQW~~avelaq~~~l----------~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae  951 (1189)
T KOG2041|consen  891 LNQWGEAVELAQRFQL----------PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE  951 (1189)
T ss_pred             HHHHHHHHHHHHhccc----------hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence            7788888777655322          222221              1123445667776667777766665

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.41  E-value=0.059  Score=45.25  Aligned_cols=169  Identities=11%  Similarity=-0.022  Sum_probs=100.9

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHhC---CCCChhHHHHHHHHHHh---cCChhHHHHHHHHHHhcCCCCcHHHHHHHH
Q 018582          131 QFLITLYGQTGNLSEVYRIWRSLRLAF---PNTANISYLNMIQVLVN---LKDLPGAEKCFKEWESGCATYDIRVTNVMI  204 (353)
Q Consensus       131 ~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li  204 (353)
                      ..++-+|-...+++..+++.+.+...-   +.-....-....-++.+   .|+.++|.+++..+......++..+|..+.
T Consensus       145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G  224 (374)
T PF13281_consen  145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG  224 (374)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence            344456778888888888888876541   11111222234455566   788888888888866555566777887777


Q ss_pred             HHHHhc---------CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCC-hH---HHHHHH---H-HHHHcCCCCCC
Q 018582          205 GAYAKE---------GRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGD-MK---LAVDCL---E-KAIDTGRGDGG  267 (353)
Q Consensus       205 ~~~~~~---------g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~-~~---~a~~~~---~-~~~~~~~~~~~  267 (353)
                      +.|-..         ...++|...|.+.-+.  .||..+=-.+...+...|. .+   +..++-   . .+.+.|...  
T Consensus       225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~--  300 (374)
T PF13281_consen  225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE--  300 (374)
T ss_pred             HHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc--
Confidence            766431         2367788888876654  3444332222222222222 22   222222   1 222233210  


Q ss_pred             CCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 018582          268 KWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD  304 (353)
Q Consensus       268 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  304 (353)
                       -..+-..+.+++.++.-.|+.+.|.+..+++....+
T Consensus       301 -~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~  336 (374)
T PF13281_consen  301 -KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKP  336 (374)
T ss_pred             -ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Confidence             124566778889999999999999999999998754

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.41  E-value=0.055  Score=44.84  Aligned_cols=100  Identities=17%  Similarity=0.162  Sum_probs=53.4

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHH
Q 018582          201 NVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFM  280 (353)
Q Consensus       201 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  280 (353)
                      +..|.-+...|+...|.++-.+..    .|+..-|...+.+++..++|++-.++...    .        -++.-|..++
T Consensus       181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----k--------KsPIGyepFv  244 (319)
T PF04840_consen  181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----K--------KSPIGYEPFV  244 (319)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C--------CCCCChHHHH
Confidence            333444555666666555544432    35666666666666666666655544321    1        1224455566


Q ss_pred             HHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChH
Q 018582          281 RHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSP  326 (353)
Q Consensus       281 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  326 (353)
                      .+|.+.|+..+|.++..+     + +    +..-+..|.+.|++.+
T Consensus       245 ~~~~~~~~~~eA~~yI~k-----~-~----~~~rv~~y~~~~~~~~  280 (319)
T PF04840_consen  245 EACLKYGNKKEASKYIPK-----I-P----DEERVEMYLKCGDYKE  280 (319)
T ss_pred             HHHHHCCCHHHHHHHHHh-----C-C----hHHHHHHHHHCCCHHH
Confidence            666666666666665554     1 1    1445555555565433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.39  E-value=0.03  Score=41.39  Aligned_cols=134  Identities=13%  Similarity=0.070  Sum_probs=97.1

Q ss_pred             CCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-CChhhHH
Q 018582          158 PNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGAD-PNAKTWE  236 (353)
Q Consensus       158 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~  236 (353)
                      ..|+...-..+..+....|+..+|...|++....-...|....-.+.++....+++..|...++.+.+.... -++.+.-
T Consensus        85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L  164 (251)
T COG4700          85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL  164 (251)
T ss_pred             hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence            345666666778888888888888888888887766777778888888888888888888888887765311 1123445


Q ss_pred             HHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 018582          237 IFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEIL  299 (353)
Q Consensus       237 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  299 (353)
                      .+.+.+...|.+.+|..-|+......        |+...-......+.+.|+.+++..-+..+
T Consensus       165 l~aR~laa~g~~a~Aesafe~a~~~y--------pg~~ar~~Y~e~La~qgr~~ea~aq~~~v  219 (251)
T COG4700         165 LFARTLAAQGKYADAESAFEVAISYY--------PGPQARIYYAEMLAKQGRLREANAQYVAV  219 (251)
T ss_pred             HHHHHHHhcCCchhHHHHHHHHHHhC--------CCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence            66788888888888888888888875        66665555566677777766665544433

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.28  E-value=0.0028  Score=39.68  Aligned_cols=57  Identities=25%  Similarity=0.359  Sum_probs=32.9

Q ss_pred             HHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582          205 GAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG  262 (353)
Q Consensus       205 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  262 (353)
                      ..|.+.+++++|.++++++...++. +...+......+.+.|++++|.+.++...+.+
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~   59 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELS   59 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence            3455566666666666666655322 44555555556666666666666666666554

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.28  E-value=0.081  Score=44.00  Aligned_cols=277  Identities=16%  Similarity=0.092  Sum_probs=150.5

Q ss_pred             HHHHHHHHHh--cCCcchHHHHHHHHHHCCCCCCcchHHHHHHH--HHhcCChhHHHHHHHHHHHcCCCCCcHHH--HHH
Q 018582           24 FNSLMTLYAK--TGHPEKIPAIIQEMKASSIMPDSYTYNVWMRA--LAAVNDISGAERVIEEMKRDGRVAADWTT--FSN   97 (353)
Q Consensus        24 ~~~ll~~~~~--~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~   97 (353)
                      |..|-.++..  .|+-..|.++-.+-.+. +.-|......++.+  ..-.|+++.|.+-|+.|...    |....  ...
T Consensus        85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d----PEtRllGLRg  159 (531)
T COG3898          85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD----PETRLLGLRG  159 (531)
T ss_pred             HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC----hHHHHHhHHH
Confidence            5555555544  45666666655544322 33455555555543  44568999999999988863    33322  222


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhC-CCCChh--HHHHHHHHHH-
Q 018582           98 LASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAF-PNTANI--SYLNMIQVLV-  173 (353)
Q Consensus        98 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~l~~~~~-  173 (353)
                      |.-..-+.|+.+.|.+.-+.....-+. -...+...+...+..|+|+.|+++.+.-++.. +.++..  .-..++.+-. 
T Consensus       160 LyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~  238 (531)
T COG3898         160 LYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM  238 (531)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence            333344678888888887777654433 45677888888899999999999888765542 233332  1122222211 


Q ss_pred             -h-cCChhHHHHHHHHHHhcCCCCcHHH-HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHH
Q 018582          174 -N-LKDLPGAEKCFKEWESGCATYDIRV-TNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKL  250 (353)
Q Consensus       174 -~-~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~  250 (353)
                       . ..+...|...-.+..+.  .||... -..-..++.+.|+..++-.+++.+-+..+.|+.  +  .+..+.+.|+  .
T Consensus       239 s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a--~lY~~ar~gd--t  310 (531)
T COG3898         239 SLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--A--LLYVRARSGD--T  310 (531)
T ss_pred             HHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--H--HHHHHhcCCC--c
Confidence             1 12334444444444433  333221 122345677777888888888877776444432  2  1122334443  3


Q ss_pred             HHHHHHHHHHcCCCCCCCCcc-cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHc
Q 018582          251 AVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAA  321 (353)
Q Consensus       251 a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  321 (353)
                      +..-+++..+..-     ++| +....-.+..+....|++..|..--+......  |....|..|.+.-...
T Consensus       311 a~dRlkRa~~L~s-----lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~--pres~~lLlAdIeeAe  375 (531)
T COG3898         311 ALDRLKRAKKLES-----LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREA--PRESAYLLLADIEEAE  375 (531)
T ss_pred             HHHHHHHHHHHHh-----cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC--chhhHHHHHHHHHhhc
Confidence            3444444333310     123 34555566666666777776666555544433  4555566665555443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.26  E-value=0.0022  Score=40.18  Aligned_cols=53  Identities=15%  Similarity=0.084  Sum_probs=21.3

Q ss_pred             HHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 018582          102 YVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRL  155 (353)
Q Consensus       102 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  155 (353)
                      |.+.++++.|.++++.+...++. +...|......+.+.|++++|.+.|+...+
T Consensus         5 ~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~   57 (73)
T PF13371_consen    5 YLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE   57 (73)
T ss_pred             HHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            33444444444444444333322 333333344444444444444444444433

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.24  E-value=0.00082  Score=42.83  Aligned_cols=68  Identities=19%  Similarity=0.260  Sum_probs=51.2

Q ss_pred             hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc-HHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 018582          233 KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKK  301 (353)
Q Consensus       233 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  301 (353)
                      .+++.+...|...|++++|++.|++..+. ....+...|+ ..++..+..++...|++++|.+.+++..+
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            56788888899999999999999888765 1100001233 56788999999999999999999998765

...

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.21  E-value=0.05  Score=40.26  Aligned_cols=103  Identities=16%  Similarity=0.030  Sum_probs=52.6

Q ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC-CChhHHHH
Q 018582           89 AADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN-TANISYLN  167 (353)
Q Consensus        89 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~  167 (353)
                      .|+...--.|..++.+.|+..+|...|++....-..-|....-.+.++....+++..|...++.+.+..+. .++.+...
T Consensus        86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll  165 (251)
T COG4700          86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL  165 (251)
T ss_pred             chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence            34444444555556666666666666665554333344555555555555556666666555555443210 01122233


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhc
Q 018582          168 MIQVLVNLKDLPGAEKCFKEWESG  191 (353)
Q Consensus       168 l~~~~~~~~~~~~a~~~~~~~~~~  191 (353)
                      +...+...|++..|+..|+.....
T Consensus       166 ~aR~laa~g~~a~Aesafe~a~~~  189 (251)
T COG4700         166 FARTLAAQGKYADAESAFEVAISY  189 (251)
T ss_pred             HHHHHHhcCCchhHHHHHHHHHHh
Confidence            445555555555555555555544

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.19  E-value=0.11  Score=43.63  Aligned_cols=262  Identities=12%  Similarity=-0.047  Sum_probs=123.9

Q ss_pred             HHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHH
Q 018582           30 LYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFE  109 (353)
Q Consensus        30 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  109 (353)
                      .+.+..++..|+..+....+.. +-+..-|..-+..+...+++++|.--.+.-++..  +-........-+++...++..
T Consensus        58 ~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k--d~~~k~~~r~~~c~~a~~~~i  134 (486)
T KOG0550|consen   58 AFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK--DGFSKGQLREGQCHLALSDLI  134 (486)
T ss_pred             hHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecC--CCccccccchhhhhhhhHHHH
Confidence            4455566666777766666643 2233344445555555566666555544443321  111112222233333333333


Q ss_pred             HHHHHHH---------------HHHHccC-CCCHHHHHHHH-HHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 018582          110 KAERALK---------------ELENRNA-HRDLSAYQFLI-TLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVL  172 (353)
Q Consensus       110 ~a~~~~~---------------~~~~~~~-~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  172 (353)
                      +|...++               .+..... +|.-..|..+- ..+...|++++|...-....+.... +......-..++
T Consensus       135 ~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~  213 (486)
T KOG0550|consen  135 EAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCL  213 (486)
T ss_pred             HHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-hhHHHHhccccc
Confidence            3332222               1111100 12222232221 3344566666666655554443221 122111112233


Q ss_pred             HhcCChhHHHHHHHHHHhcCCCCcH-----------HHHHHHHHHHHhcCChHHHHHHHHHHHhc---CCCCChhhHHHH
Q 018582          173 VNLKDLPGAEKCFKEWESGCATYDI-----------RVTNVMIGAYAKEGRLENAEELKERARRR---GADPNAKTWEIF  238 (353)
Q Consensus       173 ~~~~~~~~a~~~~~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~~~~~l  238 (353)
                      .-.++.+.+...|++.+..++....           ..+..=.+-..+.|++..|.+.|.+.+..   ++.|+...|...
T Consensus       214 yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nr  293 (486)
T KOG0550|consen  214 YYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNR  293 (486)
T ss_pred             ccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHh
Confidence            3455666666666666554322110           11111122234567777777777776643   234444555555


Q ss_pred             HHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc-HHHHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 018582          239 SDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKAV  303 (353)
Q Consensus       239 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  303 (353)
                      .....+.|+.++|+.--++..+.+        |. ...+..-..++...++|++|.+-++...+..
T Consensus       294 a~v~~rLgrl~eaisdc~~Al~iD--------~syikall~ra~c~l~le~~e~AV~d~~~a~q~~  351 (486)
T KOG0550|consen  294 ALVNIRLGRLREAISDCNEALKID--------SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE  351 (486)
T ss_pred             HhhhcccCCchhhhhhhhhhhhcC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            566667777777777766666543        22 2333334445566677777777777666543

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.18  E-value=0.1  Score=43.29  Aligned_cols=110  Identities=22%  Similarity=0.227  Sum_probs=86.3

Q ss_pred             hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 018582          163 ISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYY  242 (353)
Q Consensus       163 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~  242 (353)
                      .+.+..+.-+...|+...|.++-.+..    .|+...|-..+.+++..++|++..++...   +   -.+.-|..++..|
T Consensus       178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~  247 (319)
T PF04840_consen  178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEAC  247 (319)
T ss_pred             CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHH
Confidence            355666777888899888888876653    46999999999999999999988876543   1   2458899999999


Q ss_pred             HccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHH
Q 018582          243 LRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEI  298 (353)
Q Consensus       243 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  298 (353)
                      .+.|+..+|..++.++            ++    ..-+..|.++|++.+|.+.-.+
T Consensus       248 ~~~~~~~eA~~yI~k~------------~~----~~rv~~y~~~~~~~~A~~~A~~  287 (319)
T PF04840_consen  248 LKYGNKKEASKYIPKI------------PD----EERVEMYLKCGDYKEAAQEAFK  287 (319)
T ss_pred             HHCCCHHHHHHHHHhC------------Ch----HHHHHHHHHCCCHHHHHHHHHH
Confidence            9999999999998772            22    3456778899999999776443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.16  E-value=0.12  Score=43.51  Aligned_cols=168  Identities=13%  Similarity=0.060  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcc---CCCCHHHHHHHHHHHHc---cCCHHHHHHHHHHHHHhCCCCChhHHH
Q 018582           93 TTFSNLASIYVEAGLFEKAERALKELENRN---AHRDLSAYQFLITLYGQ---TGNLSEVYRIWRSLRLAFPNTANISYL  166 (353)
Q Consensus        93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~  166 (353)
                      .+...++-+|....+++...++.+.+....   +.-....-....-++-+   .|+.++|++++..+......+++.+|.
T Consensus       142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g  221 (374)
T PF13281_consen  142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG  221 (374)
T ss_pred             hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence            333456667889999999999999997641   11123333344456666   899999999999966666667888998


Q ss_pred             HHHHHHHhc---------CChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC----hHHHHHHH---HH-HHhcCC-
Q 018582          167 NMIQVLVNL---------KDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGR----LENAEELK---ER-ARRRGA-  228 (353)
Q Consensus       167 ~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----~~~a~~~~---~~-~~~~~~-  228 (353)
                      .+...|-..         ...++|...|.+.-...  |+...--.++..+...|.    ..+..++-   .. +.++|. 
T Consensus       222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~  299 (374)
T PF13281_consen  222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL  299 (374)
T ss_pred             HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence            888776431         23566777777654432  332222222222333332    12223332   22 223332 


Q ss_pred             --CCChhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582          229 --DPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG  262 (353)
Q Consensus       229 --~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  262 (353)
                        ..+--.+..++.++.-.|+.++|.+..++|.+..
T Consensus       300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~  335 (374)
T PF13281_consen  300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK  335 (374)
T ss_pred             cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence              2344556788899999999999999999999875

>PRK15331 chaperone protein SicA; Provisional

Probab=97.11  E-value=0.059  Score=39.26  Aligned_cols=91  Identities=14%  Similarity=-0.018  Sum_probs=65.7

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCh
Q 018582          169 IQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDM  248 (353)
Q Consensus       169 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~  248 (353)
                      ..-+...|++++|..+|+-+.-.++- +..-|..|..++-..+++++|...|......+. -|+..+-....++...|+.
T Consensus        44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~  121 (165)
T PRK15331         44 AYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKA  121 (165)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCH
Confidence            33455678888888888887765533 666777777888888888888888877654432 2455566677788888888


Q ss_pred             HHHHHHHHHHHHc
Q 018582          249 KLAVDCLEKAIDT  261 (353)
Q Consensus       249 ~~a~~~~~~~~~~  261 (353)
                      +.|...|......
T Consensus       122 ~~A~~~f~~a~~~  134 (165)
T PRK15331        122 AKARQCFELVNER  134 (165)
T ss_pred             HHHHHHHHHHHhC
Confidence            8888888887774

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.09  E-value=0.0064  Score=44.21  Aligned_cols=97  Identities=19%  Similarity=0.205  Sum_probs=66.9

Q ss_pred             HhcCCcchHHHHHHHHHHC--C-CCCC----c--------------chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 018582           32 AKTGHPEKIPAIIQEMKAS--S-IMPD----S--------------YTYNVWMRALAAVNDISGAERVIEEMKRDGRVAA   90 (353)
Q Consensus        32 ~~~~~~~~a~~~~~~m~~~--~-~~p~----~--------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~   90 (353)
                      ...++.+.+.+.+.++...  | +-|+    .              .+...++..+...|+++.|..+.+.+...  .|.
T Consensus        17 ~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~--dP~   94 (146)
T PF03704_consen   17 ARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALAL--DPY   94 (146)
T ss_dssp             HHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT
T ss_pred             HHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CCC
Confidence            4567777777777777653  2 1122    1              12344556677889999999999999997  688


Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HccCCCCHHHH
Q 018582           91 DWTTFSNLASIYVEAGLFEKAERALKELE-----NRNAHRDLSAY  130 (353)
Q Consensus        91 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~  130 (353)
                      +...|..+|.+|...|+...|.++|+.+.     +.|+.|+..+-
T Consensus        95 ~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~  139 (146)
T PF03704_consen   95 DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR  139 (146)
T ss_dssp             -HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence            89999999999999999999999999873     45788876543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.89  E-value=0.0057  Score=38.87  Aligned_cols=60  Identities=23%  Similarity=0.243  Sum_probs=26.1

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018582           59 YNVWMRALAAVNDISGAERVIEEMKRD----GRVAAD-WTTFSNLASIYVEAGLFEKAERALKEL  118 (353)
Q Consensus        59 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~  118 (353)
                      |+.+...+...|++++|+..|++..+.    |...|+ ..++..+..++...|++++|++.+++.
T Consensus         8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a   72 (78)
T PF13424_consen    8 YNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA   72 (78)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            444444444555555555544444321    101111 234444555555555555555555443

...

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.86  E-value=0.043  Score=38.48  Aligned_cols=80  Identities=6%  Similarity=0.057  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---------------ccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHh
Q 018582           92 WTTFSNLASIYVEAGLFEKAERALKELEN---------------RNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLA  156 (353)
Q Consensus        92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  156 (353)
                      ..++..++.++++.|+++....+++..-.               ....|+.....+++.+|+..|++..|+++.+...+.
T Consensus         2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~   81 (126)
T PF12921_consen    2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK   81 (126)
T ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            34555566666666666666655554421               112344555555555555555555555555554433


Q ss_pred             -CCCCChhHHHHHHHH
Q 018582          157 -FPNTANISYLNMIQV  171 (353)
Q Consensus       157 -~~~~~~~~~~~l~~~  171 (353)
                       +++.+..+|..|++-
T Consensus        82 Y~I~i~~~~W~~Ll~W   97 (126)
T PF12921_consen   82 YPIPIPKEFWRRLLEW   97 (126)
T ss_pred             cCCCCCHHHHHHHHHH
Confidence             233334444444443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.83  E-value=0.011  Score=49.08  Aligned_cols=262  Identities=14%  Similarity=0.078  Sum_probs=157.6

Q ss_pred             HHHHhcCChhHHHHHHHHHHHcCCCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHH--HHc--cC-CCCHHHHHHHH
Q 018582           64 RALAAVNDISGAERVIEEMKRDGRVAAD----WTTFSNLASIYVEAGLFEKAERALKEL--ENR--NA-HRDLSAYQFLI  134 (353)
Q Consensus        64 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~--~~-~~~~~~~~~l~  134 (353)
                      .-+++.|+......+|+..++.|  ..|    ..+|..|.++|.-.+++++|+++...=  ..+  |- .-...+...|.
T Consensus        25 ERLck~gdcraGv~ff~aA~qvG--TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG  102 (639)
T KOG1130|consen   25 ERLCKMGDCRAGVDFFKAALQVG--TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG  102 (639)
T ss_pred             HHHHhccchhhhHHHHHHHHHhc--chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence            34789999999999999999987  233    345777888888889999999865421  110  00 01222334455


Q ss_pred             HHHHccCCHHHHHHHHHHH----HHhCC-CCChhHHHHHHHHHHhcCC--------------------hhHHHHHHHHHH
Q 018582          135 TLYGQTGNLSEVYRIWRSL----RLAFP-NTANISYLNMIQVLVNLKD--------------------LPGAEKCFKEWE  189 (353)
Q Consensus       135 ~~~~~~~~~~~a~~~~~~~----~~~~~-~~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~  189 (353)
                      +.+.-.|.+++|+-.-.+-    ++.|- ......+-.+...|...|+                    ++.|.++|.+-.
T Consensus       103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL  182 (639)
T KOG1130|consen  103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL  182 (639)
T ss_pred             chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence            5666678888877643331    22221 1123345556666655442                    223344443311


Q ss_pred             ----hcCC-CCcHHHHHHHHHHHHhcCChHHHHHHHHHHH----hcCCC-CChhhHHHHHHHHHccCChHHHHHHHHHHH
Q 018582          190 ----SGCA-TYDIRVTNVMIGAYAKEGRLENAEELKERAR----RRGAD-PNAKTWEIFSDYYLRNGDMKLAVDCLEKAI  259 (353)
Q Consensus       190 ----~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~~~  259 (353)
                          +.|- -..-..|..|...|.-.|+++.|+..-+.-+    +.|-+ ..-..+..+..++.-.|+++.|.+.|+...
T Consensus       183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl  262 (639)
T KOG1130|consen  183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL  262 (639)
T ss_pred             HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence                1110 0112345556666666788999887654422    22211 123467778888899999999999988765


Q ss_pred             HcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHh----c-CCCCChhhhHHHHHHHHHcCCChHHH
Q 018582          260 DTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKK----A-VDDLGVEVFEPLIRTYAAAGRTSPVM  328 (353)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~g~~~~~~  328 (353)
                      ...+.-.. -.....+..+|...|.-..+++.|+.++.+-..    . +..-...++-+|..+|...|....++
T Consensus       263 ~LAielg~-r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl  335 (639)
T KOG1130|consen  263 NLAIELGN-RTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKAL  335 (639)
T ss_pred             HHHHHhcc-hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHH
Confidence            44221000 013455677888888888899999988775433    1 22245678889999998888744443

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.80  E-value=0.0047  Score=34.13  Aligned_cols=42  Identities=17%  Similarity=0.129  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHH
Q 018582          274 ETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIR  316 (353)
Q Consensus       274 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  316 (353)
                      .++..+...|.+.|++++|.++++++.+..| .|+..|..|..
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P-~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDP-DDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CCHHHHHHhhh
Confidence            4677889999999999999999999999999 88888877753

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.79  E-value=0.18  Score=44.57  Aligned_cols=164  Identities=14%  Similarity=0.035  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChh------HHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCcHH
Q 018582          129 AYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANI------SYLNMIQVLVN----LKDLPGAEKCFKEWESGCATYDIR  198 (353)
Q Consensus       129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~  198 (353)
                      ....+++...=.|+-+.+++.+.+..+.+---.+.      .|..++..++.    ..+.+.|.++++.+.+.-  |+..
T Consensus       190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P~s~  267 (468)
T PF10300_consen  190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--PNSA  267 (468)
T ss_pred             HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--CCcH
Confidence            34455666677899999999988765532211121      34444444443    346678999999999874  3444


Q ss_pred             HHH-HHHHHHHhcCChHHHHHHHHHHHhcC---CCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHH
Q 018582          199 VTN-VMIGAYAKEGRLENAEELKERARRRG---ADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSE  274 (353)
Q Consensus       199 ~~~-~li~~~~~~g~~~~a~~~~~~~~~~~---~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  274 (353)
                      .|. .-.+.+...|++++|.+.|++.....   .......+--+...+.-.++|++|.+.|..+.+...       .+..
T Consensus       268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-------WSka  340 (468)
T PF10300_consen  268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-------WSKA  340 (468)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-------cHHH
Confidence            443 33566778899999999999765311   111234455566778888999999999999999752       4555


Q ss_pred             HHHHHHH-HHHhcCCh-------hhHHHHHHHHHh
Q 018582          275 TIRTFMR-HFEQEKDV-------DGAEGFLEILKK  301 (353)
Q Consensus       275 ~~~~l~~-~~~~~~~~-------~~a~~~~~~~~~  301 (353)
                      +|..+.. ++...|+.       ++|.++|+++..
T Consensus       341 ~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  341 FYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             HHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence            5555544 34567777       888888887654

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=96.77  E-value=0.23  Score=40.73  Aligned_cols=131  Identities=9%  Similarity=0.245  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHHccCCCCHHHHHHHHHHHHc--cCC----HHHHHHHHHHHHHhCC---CCChhHHHHHHHHHHhcCCh
Q 018582          108 FEKAERALKELENRNAHRDLSAYQFLITLYGQ--TGN----LSEVYRIWRSLRLAFP---NTANISYLNMIQVLVNLKDL  178 (353)
Q Consensus       108 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~----~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~  178 (353)
                      +++...+++.|.+.|+..+..+|-+.......  ..+    ..+|..+|+.|++..+   .++...+..++..  ..++.
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~  155 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV  155 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence            34456677888888888776555543222222  222    3578888999988765   3445566655543  33333


Q ss_pred             ----hHHHHHHHHHHhcCCCCcH--HHHHHHHHHHHhcCC--hHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 018582          179 ----PGAEKCFKEWESGCATYDI--RVTNVMIGAYAKEGR--LENAEELKERARRRGADPNAKTWEIFSD  240 (353)
Q Consensus       179 ----~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~~li~  240 (353)
                          +.++.+|+.+.+.|+..+-  +..+.++........  ...+..+++.+.+.|+++....|..+.-
T Consensus       156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl  225 (297)
T PF13170_consen  156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL  225 (297)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence                4567778888876655432  333333333322222  4477888889999888887777765543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.77  E-value=0.17  Score=44.97  Aligned_cols=263  Identities=15%  Similarity=0.127  Sum_probs=135.9

Q ss_pred             CCchhHHHHHHHHHhcCCcchHHHH---------HHHHHHCCCCCCcchHHHHHHHHHhcCChh--HHHHHHHHHHHcCC
Q 018582           19 FSSMPFNSLMTLYAKTGHPEKIPAI---------IQEMKASSIMPDSYTYNVWMRALAAVNDIS--GAERVIEEMKRDGR   87 (353)
Q Consensus        19 ~~~~~~~~ll~~~~~~~~~~~a~~~---------~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~   87 (353)
                      |....+.+-+..|...|.+++|.++         |+.+...  ..+.-.++..=.+|.+.++..  +...-++++.++| 
T Consensus       554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rg-  630 (1081)
T KOG1538|consen  554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRG-  630 (1081)
T ss_pred             cccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcC-
Confidence            4445566666777888888877653         1111111  112233444445566555543  3344456677777 


Q ss_pred             CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCC----CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHh--CC-CC
Q 018582           88 VAADWTTFSNLASIYVEAGLFEKAERALKELENRNAH----RDLSAYQFLITLYGQTGNLSEVYRIWRSLRLA--FP-NT  160 (353)
Q Consensus        88 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~-~~  160 (353)
                      ..|+...   +...++-.|.+.+|-++|.+--..+-.    .|...|. ..+-+...|..++-..+.++-.+-  .. +|
T Consensus       631 e~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD-~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP  706 (1081)
T KOG1538|consen  631 ETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFD-YAQEFLGSGDPKEKKMLIRKRADWARNIKEP  706 (1081)
T ss_pred             CCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHH-HHHHHhhcCChHHHHHHHHHHHHHhhhcCCc
Confidence            6677654   566666777777777777653111000    0111111 223344455544444433321110  11 12


Q ss_pred             ChhHHHHHHHHHHhcCChhHHHHHHHH------HHhcC---CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 018582          161 ANISYLNMIQVLVNLKDLPGAEKCFKE------WESGC---ATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPN  231 (353)
Q Consensus       161 ~~~~~~~l~~~~~~~~~~~~a~~~~~~------~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~  231 (353)
                           ......+...|+.++|..+.-+      +.+-+   -..+..+...+...+.+...+..|-++|..|-..     
T Consensus       707 -----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~-----  776 (1081)
T KOG1538|consen  707 -----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL-----  776 (1081)
T ss_pred             -----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH-----
Confidence                 1233445566777666655322      11111   0123344444455555566677777777776532     


Q ss_pred             hhhHHHHHHHHHccCChHHHHHHHHHHHHcCCC---CCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 018582          232 AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRG---DGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKA  302 (353)
Q Consensus       232 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  302 (353)
                          ..+++.....++|.+|..+-++.-+.-..   |-..+.....-+.-.-.+|.+.|+..+|.++++++...
T Consensus       777 ----ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn  846 (1081)
T KOG1538|consen  777 ----KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN  846 (1081)
T ss_pred             ----HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence                24566777888888888887765443200   00001111122344456788888889998888887653

>PRK15331 chaperone protein SicA; Provisional

Probab=96.76  E-value=0.13  Score=37.56  Aligned_cols=88  Identities=14%  Similarity=-0.033  Sum_probs=57.0

Q ss_pred             HHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHH
Q 018582          136 LYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLEN  215 (353)
Q Consensus       136 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  215 (353)
                      -+...|++++|..+|.-+...++. +..-+..|..++-..+++++|...|......+.. |+..+-....+|...|+.+.
T Consensus        46 ~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~  123 (165)
T PRK15331         46 EFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAK  123 (165)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHH
Confidence            344667777777777776555442 4444556666666677777777777765544322 44445556777777777777


Q ss_pred             HHHHHHHHHh
Q 018582          216 AEELKERARR  225 (353)
Q Consensus       216 a~~~~~~~~~  225 (353)
                      |...|....+
T Consensus       124 A~~~f~~a~~  133 (165)
T PRK15331        124 ARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHh
Confidence            7777777665

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=96.75  E-value=0.27  Score=41.11  Aligned_cols=273  Identities=15%  Similarity=0.118  Sum_probs=167.5

Q ss_pred             HHHHHHHHH--hcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHH
Q 018582           59 YNVWMRALA--AVNDISGAERVIEEMKRDGRVAADWTTFSNLASI--YVEAGLFEKAERALKELENRNAHRDLSAYQFLI  134 (353)
Q Consensus        59 ~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  134 (353)
                      |..|-.++.  ..||-..|.+.-.+..+.  +..|......|+.+  -.-.|+++.|.+-|+.|... ++.-..-...|.
T Consensus        85 yqALStGliAagAGda~lARkmt~~~~~l--lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLy  161 (531)
T COG3898          85 YQALSTGLIAAGAGDASLARKMTARASKL--LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLY  161 (531)
T ss_pred             HHHHhhhhhhhccCchHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHH
Confidence            444444443  457777888777666543  44555544444443  34579999999999999862 111122233444


Q ss_pred             HHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCcHH--HHHHHHHHHH---
Q 018582          135 TLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGC-ATYDIR--VTNVMIGAYA---  208 (353)
Q Consensus       135 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~li~~~~---  208 (353)
                      -.-.+.|+.+.|..+-+..-..-+. -.-.+...+...|..|+|+.|+++++.-.... +.++..  .-..|+.+-.   
T Consensus       162 leAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~  240 (531)
T COG3898         162 LEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL  240 (531)
T ss_pred             HHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence            4455789999999888877665443 23567888999999999999999999865422 233321  1122332211   


Q ss_pred             hcCChHHHHHHHHHHHhcCCCCChhhH-HHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcC
Q 018582          209 KEGRLENAEELKERARRRGADPNAKTW-EIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEK  287 (353)
Q Consensus       209 ~~g~~~~a~~~~~~~~~~~~~p~~~~~-~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  287 (353)
                      -.-+...|...-.+..+  +.||...- ..-..++.+.|+..++-.+++.+.+..        |.+.++...+  ..+.|
T Consensus       241 ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--------PHP~ia~lY~--~ar~g  308 (531)
T COG3898         241 LDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--------PHPDIALLYV--RARSG  308 (531)
T ss_pred             hcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--------CChHHHHHHH--HhcCC
Confidence            12345566666555544  45665433 334578899999999999999999987        6666654433  34555


Q ss_pred             ChhhH-HHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChHHHHHHHHhCCCccCHhHHHHHH
Q 018582          288 DVDGA-EGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLLE  348 (353)
Q Consensus       288 ~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~~~~l~  348 (353)
                      +.... .+-.+.+....+ .|......+..+-...|++..+--..-......|....|-+|-
T Consensus       309 dta~dRlkRa~~L~slk~-nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlA  369 (531)
T COG3898         309 DTALDRLKRAKKLESLKP-NNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLA  369 (531)
T ss_pred             CcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHH
Confidence            53222 122334444555 6778888888888888885554433333444566655555443

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.73  E-value=0.06  Score=45.96  Aligned_cols=64  Identities=13%  Similarity=-0.099  Sum_probs=39.7

Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcH---HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 018582          162 NISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDI---RVTNVMIGAYAKEGRLENAEELKERARRR  226 (353)
Q Consensus       162 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~  226 (353)
                      ...+..+..+|...|++++|...|++..+..+. +.   .+|..+..+|...|+.++|...+++..+.
T Consensus        75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            345666666666667777777776666655433 22   24666666666667777776666666653

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.72  E-value=0.13  Score=45.47  Aligned_cols=180  Identities=14%  Similarity=0.155  Sum_probs=108.5

Q ss_pred             hHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc-----HHHHHHHHHHHHh----cCCHH
Q 018582           39 KIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAAD-----WTTFSNLASIYVE----AGLFE  109 (353)
Q Consensus        39 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~----~~~~~  109 (353)
                      -..-+|+-+... +||.   +..++...+-.||-+.+++.+.+..+.+++.-.     .-.|...+..++.    ..+.+
T Consensus       175 ~G~G~f~L~lSl-LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~  250 (468)
T PF10300_consen  175 FGFGLFNLVLSL-LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLE  250 (468)
T ss_pred             HHHHHHHHHHHh-CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHH
Confidence            344555555553 3333   445666666777888888877776664322221     1234555544443    45677


Q ss_pred             HHHHHHHHHHHccCCCCHHHHHHH-HHHHHccCCHHHHHHHHHHHHHh---CCCCChhHHHHHHHHHHhcCChhHHHHHH
Q 018582          110 KAERALKELENRNAHRDLSAYQFL-ITLYGQTGNLSEVYRIWRSLRLA---FPNTANISYLNMIQVLVNLKDLPGAEKCF  185 (353)
Q Consensus       110 ~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  185 (353)
                      .|.++++.+.+.  -|+...|... .+.+...|+.++|++.|+.....   -.+.....+--+.-++.-..+|++|...|
T Consensus       251 ~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f  328 (468)
T PF10300_consen  251 EAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYF  328 (468)
T ss_pred             HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence            888888888775  3454444333 35566788888888888864431   12223344555666777888888888888


Q ss_pred             HHHHhcCCCCcHHHHHHHH-HHHHhcCCh-------HHHHHHHHHHHh
Q 018582          186 KEWESGCATYDIRVTNVMI-GAYAKEGRL-------ENAEELKERARR  225 (353)
Q Consensus       186 ~~~~~~~~~~~~~~~~~li-~~~~~~g~~-------~~a~~~~~~~~~  225 (353)
                      ..+.+.. ..+..+|.-+. .++...|+.       ++|.++|.++..
T Consensus       329 ~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  329 LRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             HHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence            8888654 33444444333 334456666       788888887653

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.68  E-value=0.46  Score=42.88  Aligned_cols=90  Identities=13%  Similarity=0.098  Sum_probs=48.2

Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-----------
Q 018582          126 DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCAT-----------  194 (353)
Q Consensus       126 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------  194 (353)
                      +....-.+.+++.+.|.-++|.+.|-+.   + .|     ...+..|...++|.+|.++-+...-..+.           
T Consensus       851 ~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p-----kaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll  921 (1189)
T KOG2041|consen  851 DSELLPVMADMFTSVGMCDQAVEAYLRR---S-LP-----KAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLL  921 (1189)
T ss_pred             ccchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc-----HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence            4445566667777777777777665432   1 12     13445566666666666655442210000           


Q ss_pred             CcHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 018582          195 YDIRVTNVMIGAYAKEGRLENAEELKERARR  225 (353)
Q Consensus       195 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  225 (353)
                      .+..+ ..-|..+.+.|+.-.|-+++.+|-+
T Consensus       922 ~~~~~-~eaIe~~Rka~~~~daarll~qmae  951 (1189)
T KOG2041|consen  922 ADANH-MEAIEKDRKAGRHLDAARLLSQMAE  951 (1189)
T ss_pred             hhcch-HHHHHHhhhcccchhHHHHHHHHhH
Confidence            00001 1235566777777777777776653

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.57  E-value=0.099  Score=42.58  Aligned_cols=151  Identities=14%  Similarity=0.085  Sum_probs=109.8

Q ss_pred             hcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHH----HHHHHHHHHHhcCCH
Q 018582           33 KTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWT----TFSNLASIYVEAGLF  108 (353)
Q Consensus        33 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~  108 (353)
                      ..|++.+|-..++++.+. .|.|...+...=++|...|+...-...++++...  -.++..    +.....-++...|-+
T Consensus       115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y  191 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY  191 (491)
T ss_pred             ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence            357788888888888875 5677778888888899999999999999888765  234433    334455566788999


Q ss_pred             HHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC---CChhHHHHHHHHHHhcCChhHHHHHH
Q 018582          109 EKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN---TANISYLNMIQVLVNLKDLPGAEKCF  185 (353)
Q Consensus       109 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~  185 (353)
                      ++|++.-++..+.+.. |..+-.++...+...|++.++.++..+-...-..   .-..-|-...-.+...+.++.|+++|
T Consensus       192 ~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy  270 (491)
T KOG2610|consen  192 DDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY  270 (491)
T ss_pred             hhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence            9999999988877654 7788888888899999999999887754322110   11122333344556668999999999


Q ss_pred             HH
Q 018582          186 KE  187 (353)
Q Consensus       186 ~~  187 (353)
                      +.
T Consensus       271 D~  272 (491)
T KOG2610|consen  271 DR  272 (491)
T ss_pred             HH
Confidence            86

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.53  E-value=0.15  Score=43.64  Aligned_cols=60  Identities=13%  Similarity=-0.061  Sum_probs=33.1

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 018582           58 TYNVWMRALAAVNDISGAERVIEEMKRDGRVAADW----TTFSNLASIYVEAGLFEKAERALKELEN  120 (353)
Q Consensus        58 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~  120 (353)
                      .++.+..++...|++++|+..|++.++.   .|+.    .+|..+..+|...|+.++|+..+++..+
T Consensus        77 a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe  140 (453)
T PLN03098         77 DAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR  140 (453)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4555555555666666666666665553   2332    2355555666666666666666655554

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=96.51  E-value=0.45  Score=40.64  Aligned_cols=118  Identities=19%  Similarity=0.265  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHH
Q 018582          197 IRVTNVMIGAYAKEGRLENAEELKERARRRG-ADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSET  275 (353)
Q Consensus       197 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  275 (353)
                      ..+|...+..-.+...++.|..+|-+..+.| +.+++..+++++.-++. |+...|..+|+--+..-        ||...
T Consensus       397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f--------~d~~~  467 (660)
T COG5107         397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLKF--------PDSTL  467 (660)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHhC--------CCchH
Confidence            3455666666666666677777777776666 45566666666665543 56666667666655543        44332


Q ss_pred             -HHHHHHHHHhcCChhhHHHHHHHHHhcCC-CCChhhhHHHHHHHHHcCC
Q 018582          276 -IRTFMRHFEQEKDVDGAEGFLEILKKAVD-DLGVEVFEPLIRTYAAAGR  323 (353)
Q Consensus       276 -~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~  323 (353)
                       ..-.+.-+...++-+.|..+|+...+.-. ..-...|..++.--..-|+
T Consensus       468 y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~  517 (660)
T COG5107         468 YKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGS  517 (660)
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcc
Confidence             23445555666666666666664333111 0113456666665555565

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.48  E-value=0.067  Score=44.67  Aligned_cols=93  Identities=12%  Similarity=0.039  Sum_probs=59.1

Q ss_pred             hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhH
Q 018582          233 KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFE  312 (353)
Q Consensus       233 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  312 (353)
                      .+++.+.-+|.+.+++..|++.-.+.+..+       .+|....-.-..++...|+++.|+..|+++++..| .|..+-+
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-------~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P-~Nka~~~  329 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-------PNNVKALYRRGQALLALGEYDLARDDFQKALKLEP-SNKAARA  329 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-------CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCC-CcHHHHH
Confidence            345556666677777777777777777765       14566666667777777777777777777777776 5655555


Q ss_pred             HHHHHHHHcCC---ChHHHHHHHH
Q 018582          313 PLIRTYAAAGR---TSPVMLRRLK  333 (353)
Q Consensus       313 ~l~~~~~~~g~---~~~~~~~~m~  333 (353)
                      .|+.+--+..+   .+..++..|.
T Consensus       330 el~~l~~k~~~~~~kekk~y~~mF  353 (397)
T KOG0543|consen  330 ELIKLKQKIREYEEKEKKMYANMF  353 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55555444333   3345555554

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=96.47  E-value=0.065  Score=42.48  Aligned_cols=36  Identities=17%  Similarity=0.135  Sum_probs=30.0

Q ss_pred             hHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCh
Q 018582          213 LENAEELKERARRRGADPNAKTWEIFSDYYLRNGDM  248 (353)
Q Consensus       213 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~  248 (353)
                      -+-+++++++|...|+-||..+-..++.++.+.+-.
T Consensus       139 Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p  174 (406)
T KOG3941|consen  139 QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP  174 (406)
T ss_pred             hhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence            345788999999999999999999999999877653

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.44  E-value=0.63  Score=41.67  Aligned_cols=214  Identities=14%  Similarity=0.162  Sum_probs=120.2

Q ss_pred             HHHHHHHHhcCCc--chHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHH
Q 018582           25 NSLMTLYAKTGHP--EKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIY  102 (353)
Q Consensus        25 ~~ll~~~~~~~~~--~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  102 (353)
                      +.-=.+|.+..+.  -+.+.-+++++++|-.|+...   +...|+-.|.+.+|-++|.+--..          +..+.+|
T Consensus       602 ~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~e----------nRAlEmy  668 (1081)
T KOG1538|consen  602 ETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHE----------NRALEMY  668 (1081)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCch----------hhHHHHH
Confidence            3333445444332  233334556667776677643   345577788899998888643221          1344445


Q ss_pred             HhcCCHHHHHHHHHH-------HH--Hc-cCCCCHHHHHHHHHHHHccCCHHHHHHHHHH------HHHhCCC---CChh
Q 018582          103 VEAGLFEKAERALKE-------LE--NR-NAHRDLSAYQFLITLYGQTGNLSEVYRIWRS------LRLAFPN---TANI  163 (353)
Q Consensus       103 ~~~~~~~~a~~~~~~-------~~--~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~------~~~~~~~---~~~~  163 (353)
                      ...+.+|.|.+++..       |.  ++ ....+..--.+....+..+|+.++|..+.-+      +.+.+.+   .+..
T Consensus       669 TDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere  748 (1081)
T KOG1538|consen  669 TDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAERE  748 (1081)
T ss_pred             HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhh
Confidence            555555555554422       10  00 0000111112234556677888887765321      2222222   2344


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhh---------
Q 018582          164 SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKT---------  234 (353)
Q Consensus       164 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~---------  234 (353)
                      +...+...+.+...+..|-++|.+|-..         ..+++.....+++.+|+.+-+...+.  .||+..         
T Consensus       749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~  817 (1081)
T KOG1538|consen  749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAEN  817 (1081)
T ss_pred             HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhh
Confidence            5666666677778888899999887532         34677888899999999998886653  344321         


Q ss_pred             --HHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582          235 --WEIFSDYYLRNGDMKLAVDCLEKAIDTG  262 (353)
Q Consensus       235 --~~~li~~~~~~~~~~~a~~~~~~~~~~~  262 (353)
                        |...-.+|.+.|+-.+|..+++.+....
T Consensus       818 DrFeEAqkAfhkAGr~~EA~~vLeQLtnna  847 (1081)
T KOG1538|consen  818 DRFEEAQKAFHKAGRQREAVQVLEQLTNNA  847 (1081)
T ss_pred             hhHHHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence              2233345666677777777776665543

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.27  E-value=0.25  Score=35.20  Aligned_cols=70  Identities=21%  Similarity=0.317  Sum_probs=33.8

Q ss_pred             HhcCCHHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 018582          103 VEAGLFEKAERALKELENRNAHR--DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVL  172 (353)
Q Consensus       103 ~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  172 (353)
                      .+.|++++|.+.|+.+..+-+..  ...+--.++.+|.+.+++++|...+++..+.++.-...-|...+.++
T Consensus        21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL   92 (142)
T PF13512_consen   21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL   92 (142)
T ss_pred             HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence            34555666665555555432221  22334445555555555555555555555554433333344444333

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=96.26  E-value=0.63  Score=39.80  Aligned_cols=45  Identities=16%  Similarity=0.028  Sum_probs=32.2

Q ss_pred             HHHHHHHHhcCCcchHHHHHHHHHHCC----CCCCcchHHHHHHHHHhc
Q 018582           25 NSLMTLYAKTGHPEKIPAIIQEMKASS----IMPDSYTYNVWMRALAAV   69 (353)
Q Consensus        25 ~~ll~~~~~~~~~~~a~~~~~~m~~~~----~~p~~~~~~~ll~~~~~~   69 (353)
                      +..+..+.+.|++.++..+++++...=    ...+..+|+.++-.++++
T Consensus       132 ~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrS  180 (549)
T PF07079_consen  132 EIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRS  180 (549)
T ss_pred             HHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHH
Confidence            456677888999999999998887643    337888888755444433

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.24  E-value=0.9  Score=41.38  Aligned_cols=103  Identities=13%  Similarity=0.134  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHH
Q 018582          199 VTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRT  278 (353)
Q Consensus       199 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (353)
                      +.+--+.-+...|+..+|.++-.+.+    .||-..|-.-+.+++..++|++-+++-+...            .+.-|.-
T Consensus       686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------------sPIGy~P  749 (829)
T KOG2280|consen  686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------------SPIGYLP  749 (829)
T ss_pred             cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------------CCCCchh
Confidence            33444455556677777776665544    4566777777777777777766555543322            1334555


Q ss_pred             HHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChH
Q 018582          279 FMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSP  326 (353)
Q Consensus       279 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  326 (353)
                      ++..|.+.|+.++|.+++.+...  .       .-...+|.+.|+..+
T Consensus       750 FVe~c~~~~n~~EA~KYiprv~~--l-------~ekv~ay~~~~~~~e  788 (829)
T KOG2280|consen  750 FVEACLKQGNKDEAKKYIPRVGG--L-------QEKVKAYLRVGDVKE  788 (829)
T ss_pred             HHHHHHhcccHHHHhhhhhccCC--h-------HHHHHHHHHhccHHH
Confidence            66777777777777777765321  1       145556666666433

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=96.24  E-value=0.41  Score=37.42  Aligned_cols=226  Identities=18%  Similarity=0.104  Sum_probs=126.6

Q ss_pred             CChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-cCCCCHHHHHHHHHHHHccCCHHHHHH
Q 018582           70 NDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENR-NAHRDLSAYQFLITLYGQTGNLSEVYR  148 (353)
Q Consensus        70 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~  148 (353)
                      +....+...+...............+......+...+++..+...+...... ........+......+...+++..+.+
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (291)
T COG0457          37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE  116 (291)
T ss_pred             hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence            3444444555554443200012455556666666666666666666665432 222344455555556666666666666


Q ss_pred             HHHHHHHhCCCCChhHHHHHHH-HHHhcCChhHHHHHHHHHHhcCC--CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 018582          149 IWRSLRLAFPNTANISYLNMIQ-VLVNLKDLPGAEKCFKEWESGCA--TYDIRVTNVMIGAYAKEGRLENAEELKERARR  225 (353)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  225 (353)
                      .+.........+ ......... .+...|+++.+...+.+......  ......+......+...++.+.+...+.....
T Consensus       117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  195 (291)
T COG0457         117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK  195 (291)
T ss_pred             HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence            666665543322 112222222 56677777777777777644221  12233333344445566777777777777766


Q ss_pred             cCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc-HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 018582          226 RGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKAVD  304 (353)
Q Consensus       226 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  304 (353)
                      .........+..+...+...++++.|...+.......        |+ ...+..+...+...+..+.+...+.......+
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (291)
T COG0457         196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--------PDNAEALYNLALLLLELGRYEEALEALEKALELDP  267 (291)
T ss_pred             hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--------cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            5211134566667777777777788888887777764        43 33444444444466667777777777766555

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.23  E-value=0.16  Score=40.24  Aligned_cols=86  Identities=14%  Similarity=0.140  Sum_probs=37.9

Q ss_pred             CCHHHHHHHHHHHHHhCCC--CChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--CcHHHHHHHHHHHHhcCChHHH
Q 018582          141 GNLSEVYRIWRSLRLAFPN--TANISYLNMIQVLVNLKDLPGAEKCFKEWESGCAT--YDIRVTNVMIGAYAKEGRLENA  216 (353)
Q Consensus       141 ~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a  216 (353)
                      |++..|...|....+..+.  -....+-.|..++...|++++|..+|..+.+.-++  .-+..+--|..+..+.|+.++|
T Consensus       155 gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A  234 (262)
T COG1729         155 GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEA  234 (262)
T ss_pred             CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHH
Confidence            4455555555554444321  11123334555555555555555555544432211  1123344444444555555555


Q ss_pred             HHHHHHHHhc
Q 018582          217 EELKERARRR  226 (353)
Q Consensus       217 ~~~~~~~~~~  226 (353)
                      ..+|+++.+.
T Consensus       235 ~atl~qv~k~  244 (262)
T COG1729         235 CATLQQVIKR  244 (262)
T ss_pred             HHHHHHHHHH
Confidence            5555555443

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.17  E-value=0.26  Score=41.31  Aligned_cols=62  Identities=15%  Similarity=0.061  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 018582          164 SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRR  226 (353)
Q Consensus       164 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  226 (353)
                      ++..+..++.+.+++..|.+.-++.+..+ ++|+...-.=..++...|+++.|+..|+.+++.
T Consensus       259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~  320 (397)
T KOG0543|consen  259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL  320 (397)
T ss_pred             HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence            34444555555555555555555555444 224444444455555555555555555555543

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=96.07  E-value=0.17  Score=35.15  Aligned_cols=94  Identities=21%  Similarity=0.145  Sum_probs=55.6

Q ss_pred             HHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHc-CCCCCCCCcccHHHHHHHHHHHH
Q 018582          206 AYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDT-GRGDGGKWVPSSETIRTFMRHFE  284 (353)
Q Consensus       206 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~  284 (353)
                      +....|+.+.|++.|.+....- +-....||.-..++.-.|+.++|++-+++..+. |.+    -..--..|..-...|.
T Consensus        52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~----trtacqa~vQRg~lyR  126 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ----TRTACQAFVQRGLLYR  126 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc----chHHHHHHHHHHHHHH
Confidence            3455677777777777666542 225566777777777777777777777776665 210    0001122333334566


Q ss_pred             hcCChhhHHHHHHHHHhcCC
Q 018582          285 QEKDVDGAEGFLEILKKAVD  304 (353)
Q Consensus       285 ~~~~~~~a~~~~~~~~~~~~  304 (353)
                      ..|+-+.|..-|+...+.|.
T Consensus       127 l~g~dd~AR~DFe~AA~LGS  146 (175)
T KOG4555|consen  127 LLGNDDAARADFEAAAQLGS  146 (175)
T ss_pred             HhCchHHHHHhHHHHHHhCC
Confidence            67777777777776666655

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=96.03  E-value=0.53  Score=38.69  Aligned_cols=130  Identities=15%  Similarity=0.231  Sum_probs=65.3

Q ss_pred             cchHHHHHHHHHHCCCCCCcchHHHHHHHHHh--cC----ChhHHHHHHHHHHHcCCCC--CcHHHHHHHHHHHHhcCC-
Q 018582           37 PEKIPAIIQEMKASSIMPDSYTYNVWMRALAA--VN----DISGAERVIEEMKRDGRVA--ADWTTFSNLASIYVEAGL-  107 (353)
Q Consensus        37 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~-  107 (353)
                      +++.+++++.|.+.|++-+..+|-+..-....  ..    ....|..+|+.|++.-++-  ++-.++..++..  ..++ 
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~  155 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV  155 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence            34566778888888887777666553333322  12    2445777888887753221  222233333222  3333 


Q ss_pred             ---HHHHHHHHHHHHHccCCCCH--HHHHHHHHHHHccCC--HHHHHHHHHHHHHhCCCCChhHHHHH
Q 018582          108 ---FEKAERALKELENRNAHRDL--SAYQFLITLYGQTGN--LSEVYRIWRSLRLAFPNTANISYLNM  168 (353)
Q Consensus       108 ---~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l  168 (353)
                         .+.++.+++.+.+.|+..+-  ...+.++..+.....  ...+.++++.+.+.|+++....|..+
T Consensus       156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l  223 (297)
T PF13170_consen  156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL  223 (297)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence               24455666666665555332  122222222222111  23566666666666666655555443

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=96.02  E-value=0.31  Score=33.99  Aligned_cols=64  Identities=14%  Similarity=0.325  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582          198 RVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG  262 (353)
Q Consensus       198 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  262 (353)
                      ......+......|+-++..+++.++.+. -.+++...-.+..+|.+.|+..++-+++.+..+.|
T Consensus        87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG  150 (161)
T PF09205_consen   87 EYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG  150 (161)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence            33444555666666666666666666542 24555666666667777777777777777766666

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PRK11906 transcriptional regulator; Provisional

Probab=95.96  E-value=0.86  Score=39.34  Aligned_cols=81  Identities=9%  Similarity=-0.009  Sum_probs=45.3

Q ss_pred             hhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 018582           72 ISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWR  151 (353)
Q Consensus        72 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  151 (353)
                      ..+|.++-++..+.  .+.|......+..+..-.++++.|...|++....++. ...+|......+.-.|+.++|.+.++
T Consensus       320 ~~~a~~~A~rAvel--d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~  396 (458)
T PRK11906        320 AQKALELLDYVSDI--TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICID  396 (458)
T ss_pred             HHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            34455555555555  3455555555555555556666666666666554433 33444444444555666666666666


Q ss_pred             HHHH
Q 018582          152 SLRL  155 (353)
Q Consensus       152 ~~~~  155 (353)
                      +..+
T Consensus       397 ~alr  400 (458)
T PRK11906        397 KSLQ  400 (458)
T ss_pred             HHhc
Confidence            6444

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=95.95  E-value=0.38  Score=34.54  Aligned_cols=82  Identities=13%  Similarity=0.131  Sum_probs=38.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 018582           98 LASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKD  177 (353)
Q Consensus        98 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  177 (353)
                      ++..+.+.+.......+++.+...+. .+...++.++..|++.+ ..+.++.+..      ..+......++..|.+.+-
T Consensus        13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l   84 (140)
T smart00299       13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKL   84 (140)
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence            44444445555555555555544442 34445555555555432 2333333331      1223333445555555555


Q ss_pred             hhHHHHHHHH
Q 018582          178 LPGAEKCFKE  187 (353)
Q Consensus       178 ~~~a~~~~~~  187 (353)
                      ++++.-++.+
T Consensus        85 ~~~~~~l~~k   94 (140)
T smart00299       85 YEEAVELYKK   94 (140)
T ss_pred             HHHHHHHHHh
Confidence            5555555544

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.95  E-value=0.58  Score=36.55  Aligned_cols=205  Identities=14%  Similarity=0.142  Sum_probs=116.4

Q ss_pred             hHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHH
Q 018582           23 PFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIY  102 (353)
Q Consensus        23 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  102 (353)
                      .|..-..+|....++++|...+.+..+. ...|...|. .      ....+.|.-+.+++.+   .+.-...|+.....|
T Consensus        33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-A------AKayEqaamLake~~k---lsEvvdl~eKAs~lY  101 (308)
T KOG1585|consen   33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-A------AKAYEQAAMLAKELSK---LSEVVDLYEKASELY  101 (308)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-H------HHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHH
Confidence            4555666777778888887777666542 222332221 1      1234555556666655   334455667777778


Q ss_pred             HhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHh---CC--CCChhHHHHHHHHHHhcCC
Q 018582          103 VEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLA---FP--NTANISYLNMIQVLVNLKD  177 (353)
Q Consensus       103 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~~~  177 (353)
                      ..+|..+.|-..+++.-+                ....-++++|+++|++....   +-  ..-...+..+...+.+..+
T Consensus       102 ~E~GspdtAAmaleKAak----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k  165 (308)
T KOG1585|consen  102 VECGSPDTAAMALEKAAK----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK  165 (308)
T ss_pred             HHhCCcchHHHHHHHHHH----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence            888887777777766532                12344566677766664322   11  1111234555566777777


Q ss_pred             hhHHHHHHHHHH----hcCCCCc-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCCChhhHHHHHHHHHccCChH
Q 018582          178 LPGAEKCFKEWE----SGCATYD-IRVTNVMIGAYAKEGRLENAEELKERARRRG---ADPNAKTWEIFSDYYLRNGDMK  249 (353)
Q Consensus       178 ~~~a~~~~~~~~----~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~p~~~~~~~li~~~~~~~~~~  249 (353)
                      +++|-..+.+-.    +-.--++ -..|...|-.|.-..++..|.+.++.-.+.+   -.-+..+...|+.+| ..|+.+
T Consensus       166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E  244 (308)
T KOG1585|consen  166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIE  244 (308)
T ss_pred             hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHH
Confidence            777665554422    1111111 1335555666677778999999998844321   122556777888877 456777


Q ss_pred             HHHHHH
Q 018582          250 LAVDCL  255 (353)
Q Consensus       250 ~a~~~~  255 (353)
                      ++-+++
T Consensus       245 ~~~kvl  250 (308)
T KOG1585|consen  245 EIKKVL  250 (308)
T ss_pred             HHHHHH
Confidence            665554

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=95.95  E-value=0.05  Score=29.92  Aligned_cols=25  Identities=32%  Similarity=0.339  Sum_probs=10.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHc
Q 018582           97 NLASIYVEAGLFEKAERALKELENR  121 (353)
Q Consensus        97 ~l~~~~~~~~~~~~a~~~~~~~~~~  121 (353)
                      .+...|.+.|++++|.++|++..+.
T Consensus         6 ~la~~~~~~G~~~~A~~~~~~~l~~   30 (44)
T PF13428_consen    6 ALARAYRRLGQPDEAERLLRRALAL   30 (44)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3444444444444444444444433

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=95.91  E-value=0.13  Score=40.86  Aligned_cols=89  Identities=13%  Similarity=0.104  Sum_probs=53.7

Q ss_pred             CcHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccC----------------CHHHHHH
Q 018582           90 ADWTTFSNLASIYVE-----AGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTG----------------NLSEVYR  148 (353)
Q Consensus        90 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------~~~~a~~  148 (353)
                      .|..+|-..+..+..     .+.++-....++.|.+.|++.|..+|+.|++.+-+..                +-+-+++
T Consensus        65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~  144 (406)
T KOG3941|consen   65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK  144 (406)
T ss_pred             ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence            344444444444432     2344555555566666666666666666665543321                2244677


Q ss_pred             HHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 018582          149 IWRSLRLAFPNTANISYLNMIQVLVNLKDL  178 (353)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  178 (353)
                      ++++|...|+.||..+-..+++++.+.+..
T Consensus       145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~p  174 (406)
T KOG3941|consen  145 VLEQMEWHGVMPDKEIEDILVNAFGRWNFP  174 (406)
T ss_pred             HHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence            888888888888888888888888766543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.88  E-value=1  Score=39.46  Aligned_cols=156  Identities=19%  Similarity=0.192  Sum_probs=67.6

Q ss_pred             HHHhcCChhHHHHHHH--HHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCC
Q 018582           65 ALAAVNDISGAERVIE--EMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGN  142 (353)
Q Consensus        65 ~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  142 (353)
                      ...-.++++++.+..+  ++...  ++  ..-.+.++..+-+.|-.+.|+++...         +.   .-.....+.|+
T Consensus       270 ~av~~~d~~~v~~~i~~~~ll~~--i~--~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~  333 (443)
T PF04053_consen  270 TAVLRGDFEEVLRMIAASNLLPN--IP--KDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGN  333 (443)
T ss_dssp             HHHHTT-HHH-----HHHHTGGG------HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-
T ss_pred             HHHHcCChhhhhhhhhhhhhccc--CC--hhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCC
Confidence            3344555555555553  11111  22  22344555555556666666555322         11   11233345555


Q ss_pred             HHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018582          143 LSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKER  222 (353)
Q Consensus       143 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  222 (353)
                      .+.|.++.++      ..+...|..|.....+.|+++-|++.|.+..         -+..|+-.|.-.|+.+...++.+.
T Consensus       334 L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~  398 (443)
T PF04053_consen  334 LDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKI  398 (443)
T ss_dssp             HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHH
Confidence            5555554332      1344556666666666666666666555422         123444455555555555555555


Q ss_pred             HHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHH
Q 018582          223 ARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEK  257 (353)
Q Consensus       223 ~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~  257 (353)
                      ....|      -++....++.-.|+.++..+++.+
T Consensus       399 a~~~~------~~n~af~~~~~lgd~~~cv~lL~~  427 (443)
T PF04053_consen  399 AEERG------DINIAFQAALLLGDVEECVDLLIE  427 (443)
T ss_dssp             HHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred             HHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence            44432      233344444445555555555443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.84  E-value=0.82  Score=40.01  Aligned_cols=157  Identities=16%  Similarity=0.099  Sum_probs=96.0

Q ss_pred             HHHhcCCcchHHHHHHHHH-HCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCH
Q 018582           30 LYAKTGHPEKIPAIIQEMK-ASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLF  108 (353)
Q Consensus        30 ~~~~~~~~~~a~~~~~~m~-~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  108 (353)
                      ...-.++++++.+....-. -..+  +....+.+++-+-+.|-.+.|+++-..-.             .-.....+.|++
T Consensus       270 ~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~-------------~rFeLAl~lg~L  334 (443)
T PF04053_consen  270 TAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPD-------------HRFELALQLGNL  334 (443)
T ss_dssp             HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH-------------HHHHHHHHCT-H
T ss_pred             HHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH-------------HHhHHHHhcCCH
Confidence            3445677777777664111 1112  24447777777888888888877643221             244566678888


Q ss_pred             HHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 018582          109 EKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEW  188 (353)
Q Consensus       109 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  188 (353)
                      +.|.++.++.      .+...|..|.....+.|+++-|.+.|.+..         -|..++-.|.-.|+.+...++.+..
T Consensus       335 ~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a  399 (443)
T PF04053_consen  335 DIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIA  399 (443)
T ss_dssp             HHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHH
Confidence            8888776543      366788888888888888888888887642         2456666777788888877777776


Q ss_pred             HhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018582          189 ESGCATYDIRVTNVMIGAYAKEGRLENAEELKER  222 (353)
Q Consensus       189 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  222 (353)
                      ...| .     ++....++.-.|+.++..+++.+
T Consensus       400 ~~~~-~-----~n~af~~~~~lgd~~~cv~lL~~  427 (443)
T PF04053_consen  400 EERG-D-----INIAFQAALLLGDVEECVDLLIE  427 (443)
T ss_dssp             HHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred             HHcc-C-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence            6665 2     34555566667888887777765

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PRK11906 transcriptional regulator; Provisional

Probab=95.82  E-value=1.1  Score=38.74  Aligned_cols=157  Identities=11%  Similarity=0.006  Sum_probs=100.6

Q ss_pred             hHH--HHHHHHHHhc-----CChhHHHHHHHHHHh-cCCCC-cHHHHHHHHHHHHhc---------CChHHHHHHHHHHH
Q 018582          163 ISY--LNMIQVLVNL-----KDLPGAEKCFKEWES-GCATY-DIRVTNVMIGAYAKE---------GRLENAEELKERAR  224 (353)
Q Consensus       163 ~~~--~~l~~~~~~~-----~~~~~a~~~~~~~~~-~~~~~-~~~~~~~li~~~~~~---------g~~~~a~~~~~~~~  224 (353)
                      ..|  ..++.+....     ...+.|..+|.+... +...| ....|..+..++...         ....+|.++.++..
T Consensus       252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv  331 (458)
T PRK11906        252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS  331 (458)
T ss_pred             cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            345  5555554432     234567888888872 22233 345555554444322         23456777777777


Q ss_pred             hcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc-HHHHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 018582          225 RRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKAV  303 (353)
Q Consensus       225 ~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  303 (353)
                      +.+. -|......+..+....++++.|...|++....+        |+ ..+|........-.|+.++|.+.+++..+..
T Consensus       332 eld~-~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--------Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs  402 (458)
T PRK11906        332 DITT-VDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--------TDIASLYYYRALVHFHNEKIEEARICIDKSLQLE  402 (458)
T ss_pred             hcCC-CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence            7653 367777777777777888999999999999987        65 5566666666777899999999999988877


Q ss_pred             CCCC-hhhhHHHHHHHHHcCC-ChHHH
Q 018582          304 DDLG-VEVFEPLIRTYAAAGR-TSPVM  328 (353)
Q Consensus       304 ~~~~-~~~~~~l~~~~~~~g~-~~~~~  328 (353)
                      |..- .......++.|+..+- .+.++
T Consensus       403 P~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (458)
T PRK11906        403 PRRRKAVVIKECVDMYVPNPLKNNIKL  429 (458)
T ss_pred             chhhHHHHHHHHHHHHcCCchhhhHHH
Confidence            6322 2334444557776654 33344

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=95.81  E-value=1.1  Score=38.51  Aligned_cols=147  Identities=14%  Similarity=0.111  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHHHhC-CCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 018582          127 LSAYQFLITLYGQTGNLSEVYRIWRSLRLAF-PNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIG  205 (353)
Q Consensus       127 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~  205 (353)
                      ..+|...++...+..-.+.|..+|-+..+.+ ..++...+++++..++ .|+..-|..+|+.-...-.. +..--+..+.
T Consensus       397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d-~~~y~~kyl~  474 (660)
T COG5107         397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPD-STLYKEKYLL  474 (660)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCC-chHHHHHHHH
Confidence            4567777777777777888888888887777 4567777777777665 56777788888765443222 2333345666


Q ss_pred             HHHhcCChHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHH
Q 018582          206 AYAKEGRLENAEELKERARRRGADPN--AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHF  283 (353)
Q Consensus       206 ~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  283 (353)
                      .+...++-+.|..+|+...++ +..+  ...|..+|+--..-|+...+..+=+++...-        |...+...+...|
T Consensus       475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~--------pQen~~evF~Sry  545 (660)
T COG5107         475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELV--------PQENLIEVFTSRY  545 (660)
T ss_pred             HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHc--------CcHhHHHHHHHHH
Confidence            677778888888888854432 1112  4577888887777888877777777777654        5554444444444


Q ss_pred             H
Q 018582          284 E  284 (353)
Q Consensus       284 ~  284 (353)
                      .
T Consensus       546 ~  546 (660)
T COG5107         546 A  546 (660)
T ss_pred             h
Confidence            3

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.79  E-value=0.68  Score=36.17  Aligned_cols=18  Identities=33%  Similarity=0.643  Sum_probs=8.1

Q ss_pred             HHHHhcCChhHHHHHHHH
Q 018582          170 QVLVNLKDLPGAEKCFKE  187 (353)
Q Consensus       170 ~~~~~~~~~~~a~~~~~~  187 (353)
                      -.+.-..++..|...++.
T Consensus       198 lv~L~~~Dyv~aekc~r~  215 (308)
T KOG1585|consen  198 LVYLYAHDYVQAEKCYRD  215 (308)
T ss_pred             HHHhhHHHHHHHHHHhcc
Confidence            333344444445544444

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.78  E-value=0.25  Score=39.19  Aligned_cols=100  Identities=17%  Similarity=0.173  Sum_probs=55.6

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCC-C-CHHHHHHHH
Q 018582           58 TYNVWMRALAAVNDISGAERVIEEMKRDGR-VAADWTTFSNLASIYVEAGLFEKAERALKELENRNAH-R-DLSAYQFLI  134 (353)
Q Consensus        58 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~  134 (353)
                      .|+.-+. +.+.|++..|...|...++... -.-....+--|..++...|+++.|..+|..+.+.-+. | -+.++-.|.
T Consensus       144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            4555444 3355566666666666666420 0111233344666666666666666666666553322 1 134555666


Q ss_pred             HHHHccCCHHHHHHHHHHHHHhCC
Q 018582          135 TLYGQTGNLSEVYRIWRSLRLAFP  158 (353)
Q Consensus       135 ~~~~~~~~~~~a~~~~~~~~~~~~  158 (353)
                      ....+.|+.++|..+|+++.+.-+
T Consensus       223 ~~~~~l~~~d~A~atl~qv~k~YP  246 (262)
T COG1729         223 VSLGRLGNTDEACATLQQVIKRYP  246 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHCC
Confidence            666666677777777766666543

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.78  E-value=0.87  Score=37.26  Aligned_cols=226  Identities=16%  Similarity=0.183  Sum_probs=128.6

Q ss_pred             HHhcCCcchHHHHHHHHHHCC--CCCCcc------hHHHHHHHHHhcC-ChhHHHHHHHHHHHc----C---CCCCc---
Q 018582           31 YAKTGHPEKIPAIIQEMKASS--IMPDSY------TYNVWMRALAAVN-DISGAERVIEEMKRD----G---RVAAD---   91 (353)
Q Consensus        31 ~~~~~~~~~a~~~~~~m~~~~--~~p~~~------~~~~ll~~~~~~~-~~~~a~~~~~~~~~~----~---~~~~~---   91 (353)
                      ..+.|+.+.|..++.+.....  ..|+..      .|+.-. .....+ +++.|...+++..+.    +   ...|+   
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~-~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e   81 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGK-SLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE   81 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHH-HHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence            356789999999998887642  233322      233333 334455 888887777765543    1   12333   


Q ss_pred             --HHHHHHHHHHHHhcCCHH---HHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHH
Q 018582           92 --WTTFSNLASIYVEAGLFE---KAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYL  166 (353)
Q Consensus        92 --~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  166 (353)
                        ..++..++.+|...+..+   +|.++++.+....+. .+..+..-+..+.+.++.+++.+.+.+|...-.. ....+.
T Consensus        82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~  159 (278)
T PF08631_consen   82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFD  159 (278)
T ss_pred             HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHH
Confidence              245677888888887755   456666666555443 3456666677777789999999999999876331 334455


Q ss_pred             HHHHHHHhc--CChhHHHHHHHHHHhcCCCCcHH--HHHHHHHHH-HhcC--------ChHHHHHHHHHHHh-cCCCCCh
Q 018582          167 NMIQVLVNL--KDLPGAEKCFKEWESGCATYDIR--VTNVMIGAY-AKEG--------RLENAEELKERARR-RGADPNA  232 (353)
Q Consensus       167 ~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~-~~~g--------~~~~a~~~~~~~~~-~~~~p~~  232 (353)
                      .++..+...  .....+...+..+....+.|...  .=..++... ...+        +.+....+++.+.+ .+.+.+.
T Consensus       160 ~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~  239 (278)
T PF08631_consen  160 SILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSA  239 (278)
T ss_pred             HHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCH
Confidence            555554222  23345666666666444444442  111222211 1111        14445555554332 2223333


Q ss_pred             hhHH---HHH----HHHHccCChHHHHHHHHHHH
Q 018582          233 KTWE---IFS----DYYLRNGDMKLAVDCLEKAI  259 (353)
Q Consensus       233 ~~~~---~li----~~~~~~~~~~~a~~~~~~~~  259 (353)
                      .+-.   +++    ..+.+.++++.|.+.|+-..
T Consensus       240 ~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  240 EAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            3322   222    34567899999999988654

It is also involved in sporulation [].

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=95.75  E-value=0.48  Score=34.05  Aligned_cols=125  Identities=10%  Similarity=0.076  Sum_probs=64.5

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHc
Q 018582           60 NVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQ  139 (353)
Q Consensus        60 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  139 (353)
                      ..++..+...+.......+++.+...+  ..+...++.++..|++.+ .++....++.      ..+......+++.|.+
T Consensus        11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~--~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~   81 (140)
T smart00299       11 SEVVELFEKRNLLEELIPYLESALKLN--SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEK   81 (140)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHccC--ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence            445555656666677777777766654  255556667777776553 2333333331      1122334446666666


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc-CChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 018582          140 TGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNL-KDLPGAEKCFKEWESGCATYDIRVTNVMIGAYA  208 (353)
Q Consensus       140 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  208 (353)
                      .+.++++.-++.++..         +...+..+... ++.+.|.++..+      ..+...|..++..+.
T Consensus        82 ~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l  136 (140)
T smart00299       82 AKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALL  136 (140)
T ss_pred             cCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence            6666666666655411         11122222222 556666665554      114445555555544

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=95.67  E-value=0.45  Score=33.15  Aligned_cols=88  Identities=14%  Similarity=-0.013  Sum_probs=38.1

Q ss_pred             HhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHh-CCCCChh---HHHHHHHHHHhcCCh
Q 018582          103 VEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLA-FPNTANI---SYLNMIQVLVNLKDL  178 (353)
Q Consensus       103 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~---~~~~l~~~~~~~~~~  178 (353)
                      ...|+.+.|++.|.+....-++ ...+||.-..++--.|+.++|++=+++..+. |.+ ...   .|..-...|...|+-
T Consensus        54 aE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g~d  131 (175)
T KOG4555|consen   54 AEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLGND  131 (175)
T ss_pred             HhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhCch
Confidence            3444555555555444433222 3444555445554455555555444444332 211 111   222223334445555


Q ss_pred             hHHHHHHHHHHhcC
Q 018582          179 PGAEKCFKEWESGC  192 (353)
Q Consensus       179 ~~a~~~~~~~~~~~  192 (353)
                      +.|..-|....+.|
T Consensus       132 d~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  132 DAARADFEAAAQLG  145 (175)
T ss_pred             HHHHHhHHHHHHhC
Confidence            55555555544444

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.65  E-value=0.59  Score=34.42  Aligned_cols=135  Identities=13%  Similarity=0.076  Sum_probs=71.8

Q ss_pred             CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHH-HH--
Q 018582           55 DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADW-TTFSNLASIYVEAGLFEKAERALKELENRNAHRDLS-AY--  130 (353)
Q Consensus        55 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~--  130 (353)
                      +..+|...++ +++.+..++|+.-|..+.+.| ...-. -..-.......+.|+...|...|+++-.....|-.. -.  
T Consensus        58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg-~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR  135 (221)
T COG4649          58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTG-YGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR  135 (221)
T ss_pred             chHHHHHHHH-HHHcCCchHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence            3344554444 345667777777777777765 22211 112223445566777777777777775543333322 11  


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 018582          131 QFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESG  191 (353)
Q Consensus       131 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  191 (353)
                      -.-.-.+...|.++....-.+.+-..+...-...-..|.-+-.+.|++.+|.+.|..+...
T Consensus       136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D  196 (221)
T COG4649         136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND  196 (221)
T ss_pred             HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence            1111234566667766666655543333222233344555556667777777777766543

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.64  E-value=1.3  Score=38.47  Aligned_cols=127  Identities=16%  Similarity=0.150  Sum_probs=69.3

Q ss_pred             HHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCC------------------
Q 018582           26 SLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGR------------------   87 (353)
Q Consensus        26 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------------------   87 (353)
                      .+|.-.-+..+++.-++.-.+..+  +.|+-.+.-+++. --....+.++.++|++..+.|.                  
T Consensus       173 ~IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILLA-EEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~  249 (539)
T PF04184_consen  173 EIMQKAWRERNPQARIKAAKEALE--INPDCADAYILLA-EEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEA  249 (539)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhcc-cccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhh
Confidence            344444455555555555555555  3455433322221 1123446777777777665430                  


Q ss_pred             -CCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 018582           88 -VAAD----WTTFSNLASIYVEAGLFEKAERALKELENRNAHR-DLSAYQFLITLYGQTGNLSEVYRIWRSLRL  155 (353)
Q Consensus        88 -~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  155 (353)
                       ...+    ..+-..|..++.+.|+.++|.+.+++|.+..+.. .......|+.++...+.+.++..++.+..+
T Consensus       250 ~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD  323 (539)
T PF04184_consen  250 WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD  323 (539)
T ss_pred             hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence             0001    1112345566667777777777777776543332 334566677777777777777777776543

The molecular function of this protein is uncertain.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.60  E-value=1.4  Score=38.38  Aligned_cols=98  Identities=14%  Similarity=0.127  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--hhhHHHHHH
Q 018582          164 SYLNMIQVLVNLKDLPGAEKCFKEWESGCAT-YDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPN--AKTWEIFSD  240 (353)
Q Consensus       164 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~li~  240 (353)
                      +-..+..++.+.|+.++|.+.++++.+..+. .+..+...|+.++...+.+.++..++.+-.+.. .|.  ...|+..+-
T Consensus       261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~-lpkSAti~YTaALL  339 (539)
T PF04184_consen  261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS-LPKSATICYTAALL  339 (539)
T ss_pred             hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc-CCchHHHHHHHHHH
Confidence            3345667777889999999999998865433 245577788999999999999999998865432 223  345655443


Q ss_pred             HHHccCC---------------hHHHHHHHHHHHHcC
Q 018582          241 YYLRNGD---------------MKLAVDCLEKAIDTG  262 (353)
Q Consensus       241 ~~~~~~~---------------~~~a~~~~~~~~~~~  262 (353)
                      .....++               -..|.+.+.+..+.+
T Consensus       340 kaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefN  376 (539)
T PF04184_consen  340 KARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFN  376 (539)
T ss_pred             HHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhC
Confidence            3322222               123567777777665

The molecular function of this protein is uncertain.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=95.55  E-value=0.9  Score=35.86  Aligned_cols=185  Identities=16%  Similarity=0.192  Sum_probs=95.4

Q ss_pred             HHhcCCHHHHHHHHHHHHHccCC--CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh-
Q 018582          102 YVEAGLFEKAERALKELENRNAH--RDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDL-  178 (353)
Q Consensus       102 ~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-  178 (353)
                      -.+.|++++|.+.|+.+...-+.  -...+--.++-++.+.++++.|+..+++.....+......|...|.+++.--.+ 
T Consensus        44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~  123 (254)
T COG4105          44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID  123 (254)
T ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence            34567777777777777654322  123344455566667777777777777766655443444455555554422111 


Q ss_pred             ------hHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHH
Q 018582          179 ------PGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAV  252 (353)
Q Consensus       179 ------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~  252 (353)
                            ..+.+.+..+            ..++.-|=...-...|......+...    =...=..+.+-|.+.|.+..|.
T Consensus       124 ~~~rDq~~~~~A~~~f------------~~~i~ryPnS~Ya~dA~~~i~~~~d~----LA~~Em~IaryY~kr~~~~AA~  187 (254)
T COG4105         124 DVTRDQSAARAAFAAF------------KELVQRYPNSRYAPDAKARIVKLNDA----LAGHEMAIARYYLKRGAYVAAI  187 (254)
T ss_pred             ccccCHHHHHHHHHHH------------HHHHHHCCCCcchhhHHHHHHHHHHH----HHHHHHHHHHHHHHhcChHHHH
Confidence                  1111111111            01111111111111222211111110    0000023456788999999999


Q ss_pred             HHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCh
Q 018582          253 DCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGV  308 (353)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  308 (353)
                      .-+++|++.-..    ..-....+-.+..+|...|-.++|.+.-+-+. .+. |+.
T Consensus       188 nR~~~v~e~y~~----t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~-~N~-p~s  237 (254)
T COG4105         188 NRFEEVLENYPD----TSAVREALARLEEAYYALGLTDEAKKTAKVLG-ANY-PDS  237 (254)
T ss_pred             HHHHHHHhcccc----ccchHHHHHHHHHHHHHhCChHHHHHHHHHHH-hcC-CCC
Confidence            999999998411    11124566777889999999999988766544 444 443

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.50  E-value=0.89  Score=35.45  Aligned_cols=226  Identities=18%  Similarity=0.104  Sum_probs=161.3

Q ss_pred             cCCcchHHHHHHHHHHCCCC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCcHHHHHHHHHHHHhcCCHHHH
Q 018582           34 TGHPEKIPAIIQEMKASSIM-PDSYTYNVWMRALAAVNDISGAERVIEEMKRD-GRVAADWTTFSNLASIYVEAGLFEKA  111 (353)
Q Consensus        34 ~~~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a  111 (353)
                      .+....+...+......... .....+......+...+++..+...+...... . .......+......+...++...+
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  114 (291)
T COG0457          36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELEL-LPNLAEALLNLGLLLEALGKYEEA  114 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhh-ccchHHHHHHHHHHHHHHhhHHHH
Confidence            35556666666666654311 12567777788888899999999988888752 2 456667777888888888999999


Q ss_pred             HHHHHHHHHccCCCCHHHHHHHHH-HHHccCCHHHHHHHHHHHHHhCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 018582          112 ERALKELENRNAHRDLSAYQFLIT-LYGQTGNLSEVYRIWRSLRLAFP--NTANISYLNMIQVLVNLKDLPGAEKCFKEW  188 (353)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  188 (353)
                      ...+.........+ ......... .+...|+++.+...+.+......  ......+......+...++.+.+...+...
T Consensus       115 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  193 (291)
T COG0457         115 LELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKA  193 (291)
T ss_pred             HHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence            99999987754443 222333333 78899999999999999855322  123334444455567788999999999998


Q ss_pred             HhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582          189 ESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG  262 (353)
Q Consensus       189 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  262 (353)
                      ...........+..+...+...+.++.+...+......... ....+..+...+...+..+.+...+.......
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (291)
T COG0457         194 LKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALELD  266 (291)
T ss_pred             HhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            87653324677888888899999999999999998875322 23445555555557778999999999988875

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.49  E-value=0.39  Score=44.16  Aligned_cols=174  Identities=11%  Similarity=0.075  Sum_probs=100.3

Q ss_pred             HHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHH----HHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q 018582           25 NSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNV----WMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLAS  100 (353)
Q Consensus        25 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  100 (353)
                      ..-+..+.+...++.|+.+-+   ..+.  +..+...    ...-+.+.|++++|...|-+-+..  ..|..     ++.
T Consensus       338 e~kL~iL~kK~ly~~Ai~LAk---~~~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~s~-----Vi~  405 (933)
T KOG2114|consen  338 ETKLDILFKKNLYKVAINLAK---SQHL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEPSE-----VIK  405 (933)
T ss_pred             HHHHHHHHHhhhHHHHHHHHH---hcCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CChHH-----HHH
Confidence            344555556666666655532   2332  3333333    334456778899888888766653  44443     566


Q ss_pred             HHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhH
Q 018582          101 IYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPG  180 (353)
Q Consensus       101 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  180 (353)
                      -|.....+.+-..+++.+.+.|.. +...-+.|+.+|.+.++.++..++.+... .|..  ..-....+..+.+.+-.++
T Consensus       406 kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~  481 (933)
T KOG2114|consen  406 KFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE  481 (933)
T ss_pred             HhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence            667777777777888888887776 66667788888888888888776665433 2211  1123445566666666666


Q ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018582          181 AEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKER  222 (353)
Q Consensus       181 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  222 (353)
                      |.-+-.+...     +......+   +-..+++++|++.+..
T Consensus       482 a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~s  515 (933)
T KOG2114|consen  482 AELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISS  515 (933)
T ss_pred             HHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhc
Confidence            5554443322     22222222   2334556666655543

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.40  E-value=1.1  Score=36.07  Aligned_cols=145  Identities=15%  Similarity=0.172  Sum_probs=81.3

Q ss_pred             HHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChH
Q 018582          135 TLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLE  214 (353)
Q Consensus       135 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  214 (353)
                      ......|++.+|...|......... +...-..+..+|...|+.+.|..++..+..............-|..+.+.....
T Consensus       142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~  220 (304)
T COG3118         142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP  220 (304)
T ss_pred             hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence            3455677777777777777666443 344555677777777777777777777554322222222222334444444444


Q ss_pred             HHHHHHHHHHhcCCCC-ChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCC
Q 018582          215 NAEELKERARRRGADP-NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKD  288 (353)
Q Consensus       215 ~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  288 (353)
                      +...+-.+.-.   .| |...-..+...+...|+.+.|++.+-.+++.+..     .-|...-..++..+.-.|.
T Consensus       221 ~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~-----~~d~~~Rk~lle~f~~~g~  287 (304)
T COG3118         221 EIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRG-----FEDGEARKTLLELFEAFGP  287 (304)
T ss_pred             CHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-----ccCcHHHHHHHHHHHhcCC
Confidence            44444444333   23 4555556666777777777777776666665321     1244445555555555553

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=95.29  E-value=0.38  Score=38.78  Aligned_cols=77  Identities=12%  Similarity=0.058  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHh-----cCCCCcHHHHHHH
Q 018582          129 AYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWES-----GCATYDIRVTNVM  203 (353)
Q Consensus       129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l  203 (353)
                      ++..++..+...|+.+.+.+.++++....+ -+...|..++.+|.+.|+...|...|+++.+     .|+.|...+....
T Consensus       155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y  233 (280)
T COG3629         155 ALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY  233 (280)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence            566666666666777777777776666654 3566666777777777777777666666543     5666666666555


Q ss_pred             HHH
Q 018582          204 IGA  206 (353)
Q Consensus       204 i~~  206 (353)
                      ...
T Consensus       234 ~~~  236 (280)
T COG3629         234 EEI  236 (280)
T ss_pred             HHH
Confidence            555

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.28  E-value=1.3  Score=36.17  Aligned_cols=227  Identities=15%  Similarity=0.090  Sum_probs=129.3

Q ss_pred             HHhcCChhHHHHHHHHHHHcC-CCCCcHH------HHHHHHHHHHhcC-CHHHHHHHHHHHHHc--------cCCCC---
Q 018582           66 LAAVNDISGAERVIEEMKRDG-RVAADWT------TFSNLASIYVEAG-LFEKAERALKELENR--------NAHRD---  126 (353)
Q Consensus        66 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~------~~~~l~~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~---  126 (353)
                      ..+.|+.+.|...+.+..... ...|+..      .|+. .....+.+ +++.|...+++..+.        ...|+   
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~-G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e   81 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNI-GKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE   81 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHH-HHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence            357899999999999988743 1344432      2232 23334455 888888877765332        12233   


Q ss_pred             --HHHHHHHHHHHHccCCHH---HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHH
Q 018582          127 --LSAYQFLITLYGQTGNLS---EVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTN  201 (353)
Q Consensus       127 --~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  201 (353)
                        ..+...++.+|...+..+   +|..+++.+....+. ....+..-+..+.+.++.+.+.+++.+|...-.- ....+.
T Consensus        82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~  159 (278)
T PF08631_consen   82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFD  159 (278)
T ss_pred             HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHH
Confidence              346677888888888765   455566666555433 2455656777788889999999999999876421 233445


Q ss_pred             HHHHHHHhc--CChHHHHHHHHHHHhcCCCCChh-hHHHH-H---HHHHccCC------hHHHHHHHHHHHHcCCCCCCC
Q 018582          202 VMIGAYAKE--GRLENAEELKERARRRGADPNAK-TWEIF-S---DYYLRNGD------MKLAVDCLEKAIDTGRGDGGK  268 (353)
Q Consensus       202 ~li~~~~~~--g~~~~a~~~~~~~~~~~~~p~~~-~~~~l-i---~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~  268 (353)
                      .++..+...  .....+...+..+....+.|... ....+ +   -...+.++      .+...+++....+....+   
T Consensus       160 ~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~---  236 (278)
T PF08631_consen  160 SILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQ---  236 (278)
T ss_pred             HHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCC---
Confidence            555554221  23456777777766554555543 11111 1   11122222      444445555433332111   


Q ss_pred             CcccHHH---HHHHH----HHHHhcCChhhHHHHHHHHH
Q 018582          269 WVPSSET---IRTFM----RHFEQEKDVDGAEGFLEILK  300 (353)
Q Consensus       269 ~~~~~~~---~~~l~----~~~~~~~~~~~a~~~~~~~~  300 (353)
                        .+..+   ..+++    ..+.+.++++.|.++|+-..
T Consensus       237 --ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  237 --LSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             --CCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence              23333   22332    23567889999999988543

It is also involved in sporulation [].

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.25  E-value=0.96  Score=37.58  Aligned_cols=229  Identities=15%  Similarity=0.025  Sum_probs=129.4

Q ss_pred             HhcCCcchHHHHHHHHHHC--CCCCCcchHHHHHHHHHhcCChhHHHHHHH----HHHHcCCCCCcHHHHHHHHHHHHhc
Q 018582           32 AKTGHPEKIPAIIQEMKAS--SIMPDSYTYNVWMRALAAVNDISGAERVIE----EMKRDGRVAADWTTFSNLASIYVEA  105 (353)
Q Consensus        32 ~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~  105 (353)
                      ....+.++|+..|.+-..+  ...--..+|..+..+.+..|.+++++..--    -..+...-..-...|..+.+++-+.
T Consensus        17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l   96 (518)
T KOG1941|consen   17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL   96 (518)
T ss_pred             hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456667777777665543  111123356667777778887777655322    1222110112233455566666666


Q ss_pred             CCHHHHHHHHHHHHHc-cCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhC-----CCCChhHHHHHHHHHHhcC
Q 018582          106 GLFEKAERALKELENR-NAHR---DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAF-----PNTANISYLNMIQVLVNLK  176 (353)
Q Consensus       106 ~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~  176 (353)
                      -++.+++.+-..-... |..|   ......++..++...+.++++++.|+......     ......+|..+...|.+..
T Consensus        97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~  176 (518)
T KOG1941|consen   97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK  176 (518)
T ss_pred             HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence            6666666665543221 1111   11233446677777788889988888764421     1122347888888888889


Q ss_pred             ChhHHHHHHHHHH----hcCCCCcHHHH-----HHHHHHHHhcCChHHHHHHHHHHHh----cCCCC-ChhhHHHHHHHH
Q 018582          177 DLPGAEKCFKEWE----SGCATYDIRVT-----NVMIGAYAKEGRLENAEELKERARR----RGADP-NAKTWEIFSDYY  242 (353)
Q Consensus       177 ~~~~a~~~~~~~~----~~~~~~~~~~~-----~~li~~~~~~g~~~~a~~~~~~~~~----~~~~p-~~~~~~~li~~~  242 (353)
                      ++++|.-+..+..    ..++.--..-|     -.|.-++...|+.-.|.+.-++..+    .|-.| .......+.+.|
T Consensus       177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy  256 (518)
T KOG1941|consen  177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY  256 (518)
T ss_pred             hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence            9888776655543    22222111122     2344566777888777777766443    33222 223455667778


Q ss_pred             HccCChHHHHHHHHHHHH
Q 018582          243 LRNGDMKLAVDCLEKAID  260 (353)
Q Consensus       243 ~~~~~~~~a~~~~~~~~~  260 (353)
                      ...|+.+.|+.-|+....
T Consensus       257 R~~gd~e~af~rYe~Am~  274 (518)
T KOG1941|consen  257 RSRGDLERAFRRYEQAMG  274 (518)
T ss_pred             HhcccHhHHHHHHHHHHH
Confidence            888998888877666443

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=95.19  E-value=0.59  Score=35.16  Aligned_cols=63  Identities=17%  Similarity=0.170  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 018582           93 TTFSNLASIYVEAGLFEKAERALKELENRNAHRD--LSAYQFLITLYGQTGNLSEVYRIWRSLRL  155 (353)
Q Consensus        93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  155 (353)
                      ..+..+...|.+.|+.+.|.+.+.++.+....+.  ...+-.+|+...-.+++..+...+.+...
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~  101 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES  101 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            3455666677777777777777777655433322  23445556666666676666666665543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.18  E-value=1.5  Score=36.12  Aligned_cols=152  Identities=14%  Similarity=0.033  Sum_probs=88.7

Q ss_pred             hcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCh--hHH--HHHHHHHHhcCChh
Q 018582          104 EAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTAN--ISY--LNMIQVLVNLKDLP  179 (353)
Q Consensus       104 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~--~~l~~~~~~~~~~~  179 (353)
                      ..|++.+|-..++++.+.-| .|..++...=.+|.-.|+.+.-...++++... ..+|.  .+|  ....-++...|-++
T Consensus       115 ~~g~~h~a~~~wdklL~d~P-tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~  192 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDDYP-TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD  192 (491)
T ss_pred             ccccccHHHHHHHHHHHhCc-hhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence            45666666666777766433 36667776777777777777777777766543 11222  222  22233445677777


Q ss_pred             HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCCChhhHHHHHHHHHccCChHHHHHHHH
Q 018582          180 GAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRG---ADPNAKTWEIFSDYYLRNGDMKLAVDCLE  256 (353)
Q Consensus       180 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~p~~~~~~~li~~~~~~~~~~~a~~~~~  256 (353)
                      +|++.-++..+.+ +.|.....+....+-..|++.++.++..+-...-   --.-...|-...-.+...+.++.|+++|+
T Consensus       193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD  271 (491)
T KOG2610|consen  193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD  271 (491)
T ss_pred             hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence            7777777776665 3366666666677777777777777665533210   00011223333334455577777777776


Q ss_pred             HH
Q 018582          257 KA  258 (353)
Q Consensus       257 ~~  258 (353)
                      +-
T Consensus       272 ~e  273 (491)
T KOG2610|consen  272 RE  273 (491)
T ss_pred             HH
Confidence            53

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.12  E-value=1.4  Score=35.55  Aligned_cols=145  Identities=13%  Similarity=0.096  Sum_probs=105.5

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCC
Q 018582          168 MIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGD  247 (353)
Q Consensus       168 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~  247 (353)
                      -.......|++.+|..+|+........ +...--.++.+|...|+.+.|..++..+...--.........-|..+.+...
T Consensus       140 ~~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~  218 (304)
T COG3118         140 EAKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA  218 (304)
T ss_pred             HhhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence            344567789999999999998877644 5667778999999999999999999997654222222222233455555555


Q ss_pred             hHHHHHHHHHHHHcCCCCCCCCcc-cHHHHHHHHHHHHhcCChhhHHHHHHHHHh--cCCCCChhhhHHHHHHHHHcCC
Q 018582          248 MKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKK--AVDDLGVEVFEPLIRTYAAAGR  323 (353)
Q Consensus       248 ~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~  323 (353)
                      ..+..++-++.-..         | |...-..+...+...|+.+.|...+-.+.+  .+. .|...-..|+..+.-.|.
T Consensus       219 ~~~~~~l~~~~aad---------Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~-~d~~~Rk~lle~f~~~g~  287 (304)
T COG3118         219 TPEIQDLQRRLAAD---------PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF-EDGEARKTLLELFEAFGP  287 (304)
T ss_pred             CCCHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-cCcHHHHHHHHHHHhcCC
Confidence            55555555555544         5 677778888899999999999987766655  344 677788889998888885

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=95.04  E-value=0.77  Score=32.12  Aligned_cols=139  Identities=12%  Similarity=0.062  Sum_probs=80.1

Q ss_pred             HccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHH
Q 018582          138 GQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAE  217 (353)
Q Consensus       138 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~  217 (353)
                      .-.|..++..++..+.....   +..-++.+|--....-+-+-..++++.+-+.   .|.          ..+|+.....
T Consensus        13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDi----------s~C~NlKrVi   76 (161)
T PF09205_consen   13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDI----------SKCGNLKRVI   76 (161)
T ss_dssp             HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-G----------GG-S-THHHH
T ss_pred             HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------hhhcchHHHH
Confidence            34677777777777766542   3445566665555555555555555554332   121          1233333333


Q ss_pred             HHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHH
Q 018582          218 ELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLE  297 (353)
Q Consensus       218 ~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  297 (353)
                      ..+-.+-     .+.......+..+...|.-++-.+++.++.+.+       .+++.....+..+|.+.|+..++.++++
T Consensus        77 ~C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-------~~~p~~L~kia~Ay~klg~~r~~~ell~  144 (161)
T PF09205_consen   77 ECYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-------EINPEFLVKIANAYKKLGNTREANELLK  144 (161)
T ss_dssp             HHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------------S-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-------CCCHHHHHHHHHHHHHhcchhhHHHHHH
Confidence            3332211     134556667788888888888889998887643       3788888899999999999999999999


Q ss_pred             HHHhcCC
Q 018582          298 ILKKAVD  304 (353)
Q Consensus       298 ~~~~~~~  304 (353)
                      +.-+.|.
T Consensus       145 ~ACekG~  151 (161)
T PF09205_consen  145 EACEKGL  151 (161)
T ss_dssp             HHHHTT-
T ss_pred             HHHHhch
Confidence            9888877

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=95.03  E-value=2.2  Score=37.32  Aligned_cols=182  Identities=10%  Similarity=0.045  Sum_probs=128.6

Q ss_pred             CCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHH
Q 018582           19 FSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNL   98 (353)
Q Consensus        19 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l   98 (353)
                      .|....-+++..++.+..++-+..+..+|...|  -+...|..++.+|... ..+.-..+++++.+.  .-.|...-..|
T Consensus        64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~--dfnDvv~~ReL  138 (711)
T COG1747          64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEY--DFNDVVIGREL  138 (711)
T ss_pred             ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--cchhHHHHHHH
Confidence            456667788888888888888999999999865  6788899999999888 667788889988885  33344444445


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHccCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHHh-CCCCChhHHHHHHHHH
Q 018582           99 ASIYVEAGLFEKAERALKELENRNAHRD-----LSAYQFLITLYGQTGNLSEVYRIWRSLRLA-FPNTANISYLNMIQVL  172 (353)
Q Consensus        99 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~  172 (353)
                      ...|-+ ++.+.+...|.++..+-++..     ...|..+...-  ..+.+..+.+...+... |...-...+.-+-..|
T Consensus       139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y  215 (711)
T COG1747         139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY  215 (711)
T ss_pred             HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence            555544 888888888888766543311     22455554321  35667777777766544 4444556677777888


Q ss_pred             HhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Q 018582          173 VNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAK  209 (353)
Q Consensus       173 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  209 (353)
                      ....++++|.+++..+.+.+- .|...-..++..+..
T Consensus       216 s~~eN~~eai~Ilk~il~~d~-k~~~ar~~~i~~lRd  251 (711)
T COG1747         216 SENENWTEAIRILKHILEHDE-KDVWARKEIIENLRD  251 (711)
T ss_pred             ccccCHHHHHHHHHHHhhhcc-hhhhHHHHHHHHHHH
Confidence            999999999999998887763 366666666665543

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=94.97  E-value=0.72  Score=34.69  Aligned_cols=63  Identities=25%  Similarity=0.293  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCh--hHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 018582          128 SAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTAN--ISYLNMIQVLVNLKDLPGAEKCFKEWES  190 (353)
Q Consensus       128 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~  190 (353)
                      ..+..+...|.+.|+.+.|++.|.++.+....+..  ..+..++....-.+++..+...+.+...
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~  101 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES  101 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            45677778888888888888888888776443332  3456677777778888887777777553

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.88  E-value=3  Score=38.03  Aligned_cols=182  Identities=17%  Similarity=0.033  Sum_probs=112.1

Q ss_pred             hhHHHHHHHHHHHcCCCCCcHHHHHHHHHH-HHhcCCHHHHHHHHHHHHH-------ccCCCCHHHHHHHHHHHHccC--
Q 018582           72 ISGAERVIEEMKRDGRVAADWTTFSNLASI-YVEAGLFEKAERALKELEN-------RNAHRDLSAYQFLITLYGQTG--  141 (353)
Q Consensus        72 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~--  141 (353)
                      ...|.++++...+.|...+-...-.....+ +....+.+.|+..|+....       .+   ...+..-+...|.+..  
T Consensus       228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~  304 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV  304 (552)
T ss_pred             hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence            467888999888877333322222233333 5567899999999998866       44   3335666777777643  


Q ss_pred             ---CHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh-cCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh----cCCh
Q 018582          142 ---NLSEVYRIWRSLRLAFPNTANISYLNMIQVLVN-LKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAK----EGRL  213 (353)
Q Consensus       142 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~  213 (353)
                         +.+.|+.++....+.|. |+...+...+.-... ..+...|.++|....+.|.. ....  .+..+|..    ..+.
T Consensus       305 ~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~--~la~~y~~G~gv~r~~  380 (552)
T KOG1550|consen  305 EKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIY--RLALCYELGLGVERNL  380 (552)
T ss_pred             ccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHH--HHHHHHHhCCCcCCCH
Confidence               66779999998887765 444433222222222 24577899999999988843 3322  23333322    2478


Q ss_pred             HHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582          214 ENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG  262 (353)
Q Consensus       214 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  262 (353)
                      +.|..++.+.-+.| .|...--...+..+.. +++..+.-.+..+...|
T Consensus       381 ~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g  427 (552)
T KOG1550|consen  381 ELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG  427 (552)
T ss_pred             HHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence            89999999998887 3332222233333444 67777666666666655

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=94.82  E-value=2  Score=35.81  Aligned_cols=231  Identities=14%  Similarity=0.094  Sum_probs=136.3

Q ss_pred             hcCChhHHHHHHHHHHHcCC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHH-H---HHcc-CCCCHHHHHHHHHHHHccC
Q 018582           68 AVNDISGAERVIEEMKRDGR-VAADWTTFSNLASIYVEAGLFEKAERALKE-L---ENRN-AHRDLSAYQFLITLYGQTG  141 (353)
Q Consensus        68 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~---~~~~-~~~~~~~~~~l~~~~~~~~  141 (353)
                      .+.+.+.|+..+.+....-. ...-..++..+..+.++.|.+++++..--. |   .+.. -..-..+|..+.+++-+.-
T Consensus        18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~   97 (518)
T KOG1941|consen   18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC   97 (518)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566666666665544210 111233556677788888888877643221 1   1100 0011335666666666666


Q ss_pred             CHHHHHHHHHHHHHh-CCCC---ChhHHHHHHHHHHhcCChhHHHHHHHHHHh-----cCCCCcHHHHHHHHHHHHhcCC
Q 018582          142 NLSEVYRIWRSLRLA-FPNT---ANISYLNMIQVLVNLKDLPGAEKCFKEWES-----GCATYDIRVTNVMIGAYAKEGR  212 (353)
Q Consensus       142 ~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~  212 (353)
                      ++.+++.+-..-... |..|   ......++..+....+.++++++.|+...+     .+......++..|...|.+..+
T Consensus        98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D  177 (518)
T KOG1941|consen   98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD  177 (518)
T ss_pred             HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence            666666655543322 2222   113345577788888899999999988653     2233456788999999999999


Q ss_pred             hHHHHHHHHHHHh----cCCCCChhhH-----HHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHH
Q 018582          213 LENAEELKERARR----RGADPNAKTW-----EIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHF  283 (353)
Q Consensus       213 ~~~a~~~~~~~~~----~~~~p~~~~~-----~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  283 (353)
                      +++|.-+.....+    .++..-..-|     -.|.-++...|..-.|.+.-++..+..+..+. -.........+.+.|
T Consensus       178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gd-ra~~arc~~~~aDIy  256 (518)
T KOG1941|consen  178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGD-RALQARCLLCFADIY  256 (518)
T ss_pred             hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCC-hHHHHHHHHHHHHHH
Confidence            9998876655432    2332222223     23445667778888888777776554211000 002244566777788


Q ss_pred             HhcCChhhHHHHHHHH
Q 018582          284 EQEKDVDGAEGFLEIL  299 (353)
Q Consensus       284 ~~~~~~~~a~~~~~~~  299 (353)
                      ...|+.+.|..-|+..
T Consensus       257 R~~gd~e~af~rYe~A  272 (518)
T KOG1941|consen  257 RSRGDLERAFRRYEQA  272 (518)
T ss_pred             HhcccHhHHHHHHHHH
Confidence            8999999988777654

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=94.82  E-value=1.6  Score=34.56  Aligned_cols=187  Identities=13%  Similarity=0.063  Sum_probs=114.5

Q ss_pred             CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHH
Q 018582           55 DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRV-AADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFL  133 (353)
Q Consensus        55 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  133 (353)
                      -...|+.-+ .-.+.|++++|.+.|+.+..+-.. +-...+.-.++-++-+.++++.|+..+++....-+......|-.-
T Consensus        34 ~~~LY~~g~-~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y  112 (254)
T COG4105          34 ASELYNEGL-TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY  112 (254)
T ss_pred             HHHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence            334455544 456889999999999999986322 222445556778888999999999999998776655444566666


Q ss_pred             HHHHHc-------cCCHHHHHHHHHH---HHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHH
Q 018582          134 ITLYGQ-------TGNLSEVYRIWRS---LRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVM  203 (353)
Q Consensus       134 ~~~~~~-------~~~~~~a~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  203 (353)
                      |.+++.       ..+...+.+.+..   +.+.-  ||+.             =...|..-+..+...    =...=..+
T Consensus       113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry--PnS~-------------Ya~dA~~~i~~~~d~----LA~~Em~I  173 (254)
T COG4105         113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY--PNSR-------------YAPDAKARIVKLNDA----LAGHEMAI  173 (254)
T ss_pred             HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC--CCCc-------------chhhHHHHHHHHHHH----HHHHHHHH
Confidence            666553       2233333333333   33332  2221             112222222222111    00111356


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhcCCCCCh---hhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582          204 IGAYAKEGRLENAEELKERARRRGADPNA---KTWEIFSDYYLRNGDMKLAVDCLEKAIDTG  262 (353)
Q Consensus       204 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  262 (353)
                      .+.|.+.|.+..|..-+++|.+. ..-+.   ..+-.+..+|...|-.++|.+.-+-+...-
T Consensus       174 aryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~  234 (254)
T COG4105         174 ARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANY  234 (254)
T ss_pred             HHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcC
Confidence            78899999999999999998876 22222   345566778888888888877766555543

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.77  E-value=0.00089  Score=48.55  Aligned_cols=83  Identities=12%  Similarity=0.075  Sum_probs=39.5

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCC
Q 018582          168 MIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGD  247 (353)
Q Consensus       168 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~  247 (353)
                      ++..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++..       +..-...++..|.+.|.
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l   85 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL   85 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence            34444455555555555555554443444555556666666655555555554410       11222334444555555


Q ss_pred             hHHHHHHHHH
Q 018582          248 MKLAVDCLEK  257 (353)
Q Consensus       248 ~~~a~~~~~~  257 (353)
                      ++.|.-++.+
T Consensus        86 ~~~a~~Ly~~   95 (143)
T PF00637_consen   86 YEEAVYLYSK   95 (143)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHH
Confidence            5555554444

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=94.75  E-value=1.9  Score=41.59  Aligned_cols=230  Identities=14%  Similarity=0.087  Sum_probs=114.2

Q ss_pred             hhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHccCCCC--------------HHHHHHH--
Q 018582           72 ISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAG--LFEKAERALKELENRNAHRD--------------LSAYQFL--  133 (353)
Q Consensus        72 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l--  133 (353)
                      ++...+..+....+  ..|+ .....++.+|.+.+  .++.|+....++......++              ...|+.-  
T Consensus       773 v~~vc~~vr~~l~~--~~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~~~~~~~ad~al~hll~Lvdvn~lfn~ALg  849 (1265)
T KOG1920|consen  773 VNSVCDAVRNALER--RAPD-KFNLFILTSYVKSNPPEIEEALQKIKELQLAQVAVSADEALKHLLFLVDVNELFNSALG  849 (1265)
T ss_pred             HHHHHHHHHHHHhh--cCcc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhccHHHHHHhhhc
Confidence            33444455554444  5666 44557888888887  67777777777664211111              1112221  


Q ss_pred             --------HHHHHccCCHHHHHHHHHHHHHh-----CCCCChh--HHHHHHHHHHhcC--ChhHHHHHHHH------HHh
Q 018582          134 --------ITLYGQTGNLSEVYRIWRSLRLA-----FPNTANI--SYLNMIQVLVNLK--DLPGAEKCFKE------WES  190 (353)
Q Consensus       134 --------~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~--~~~~l~~~~~~~~--~~~~a~~~~~~------~~~  190 (353)
                              +-+-..+.|+.+-+-++++++..     ....|.+  -|...+..+...|  -++++..+.++      ...
T Consensus       850 tYDl~Lal~VAq~SqkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~  929 (1265)
T KOG1920|consen  850 TYDLDLALLVAQKSQKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALA  929 (1265)
T ss_pred             ccchHHHHHHHHHhccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhh
Confidence                    12223344555555555554421     1111111  2333334444444  34444443332      111


Q ss_pred             cCCCCcHHHHHHHHHHH----HhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC
Q 018582          191 GCATYDIRVTNVMIGAY----AKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDG  266 (353)
Q Consensus       191 ~~~~~~~~~~~~li~~~----~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~  266 (353)
                      . ..|+...+..+..+|    ...+.+++|.-+|+..-+.         .-.+.+|..+|+|.+|+.+...+...     
T Consensus       930 l-y~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~-----  994 (1265)
T KOG1920|consen  930 L-YKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG-----  994 (1265)
T ss_pred             e-eccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC-----
Confidence            1 234444444333333    3445666666555543221         12456667777777777776654332     


Q ss_pred             CCCcccH--HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChHHHHHH
Q 018582          267 GKWVPSS--ETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRR  331 (353)
Q Consensus       267 ~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~  331 (353)
                          -+.  .+-..|+.-+...+++-+|-++..+...    .    ....+..|++...|.+|+...
T Consensus       995 ----~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s----d----~~~av~ll~ka~~~~eAlrva 1049 (1265)
T KOG1920|consen  995 ----KDELVILAEELVSRLVEQRKHYEAAKILLEYLS----D----PEEAVALLCKAKEWEEALRVA 1049 (1265)
T ss_pred             ----HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc----C----HHHHHHHHhhHhHHHHHHHHH
Confidence                121  2235677778888888888888776543    1    233445555555566666533

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=94.74  E-value=0.57  Score=37.81  Aligned_cols=80  Identities=21%  Similarity=0.208  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-----hCCCCChhHHH
Q 018582           92 WTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRL-----AFPNTANISYL  166 (353)
Q Consensus        92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~  166 (353)
                      ..++..++..+...|+++.+.+.++++....+. +...|..++.+|.+.|+...|+..|+.+.+     .|+.|...+..
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~  231 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA  231 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence            346677888888999999999999999887655 778899999999999999999999888755     47888887776


Q ss_pred             HHHHHH
Q 018582          167 NMIQVL  172 (353)
Q Consensus       167 ~l~~~~  172 (353)
                      ......
T Consensus       232 ~y~~~~  237 (280)
T COG3629         232 LYEEIL  237 (280)
T ss_pred             HHHHHh
Confidence            666663

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=94.71  E-value=1.1  Score=32.08  Aligned_cols=73  Identities=14%  Similarity=0.129  Sum_probs=39.4

Q ss_pred             HHHhcCChhHHHHHHHHHHHcCCCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHc
Q 018582           65 ALAAVNDISGAERVIEEMKRDGRVAAD---WTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQ  139 (353)
Q Consensus        65 ~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  139 (353)
                      ...+.|++++|.+.|+.+..+  .+..   ..+--.|+.+|.+.++++.|...+++.++..+...-..|-..+.+++.
T Consensus        19 ~~l~~~~Y~~A~~~le~L~~r--yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~   94 (142)
T PF13512_consen   19 EALQKGNYEEAIKQLEALDTR--YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY   94 (142)
T ss_pred             HHHHhCCHHHHHHHHHHHHhc--CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence            344556666666666666654  2222   223344666666666666666666666655444333444444444443

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=94.53  E-value=1.4  Score=32.61  Aligned_cols=27  Identities=15%  Similarity=0.203  Sum_probs=13.6

Q ss_pred             HHHCCCCCCcchHHHHHHHHHhcCChh
Q 018582           47 MKASSIMPDSYTYNVWMRALAAVNDIS   73 (353)
Q Consensus        47 m~~~~~~p~~~~~~~ll~~~~~~~~~~   73 (353)
                      +.+.+++|+...+..+++.+.+.|++.
T Consensus        20 l~~~~i~~~~~L~~lli~lLi~~~~~~   46 (167)
T PF07035_consen   20 LNQHNIPVQHELYELLIDLLIRNGQFS   46 (167)
T ss_pred             HHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence            334445555555555555555555443

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.46  E-value=2.6  Score=39.18  Aligned_cols=214  Identities=12%  Similarity=0.094  Sum_probs=130.3

Q ss_pred             hhHHHHHHHHHhcCCcchHHHHHHHHHH----CC------------CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 018582           22 MPFNSLMTLYAKTGHPEKIPAIIQEMKA----SS------------IMPDSYTYNVWMRALAAVNDISGAERVIEEMKRD   85 (353)
Q Consensus        22 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~~------------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~   85 (353)
                      ...+.++.+|...+++-.-.-++.....    .+            ..........-+..+.+...++-|..+-+.   .
T Consensus       284 ss~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~---~  360 (933)
T KOG2114|consen  284 SSSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKS---Q  360 (933)
T ss_pred             cchhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHh---c
Confidence            3456677777777765544444433322    12            011223456677777787888888777543   2


Q ss_pred             CCCCCcH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChh
Q 018582           86 GRVAADW--TTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANI  163 (353)
Q Consensus        86 ~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  163 (353)
                      + ..++.  .......+.+.+.|++++|...+-+-... ++|.     .+|.-|....+......+++.+.+.|.. +..
T Consensus       361 ~-~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~d  432 (933)
T KOG2114|consen  361 H-LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSD  432 (933)
T ss_pred             C-CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cch
Confidence            2 23332  23344455667889999999887765432 2222     3566677777888888899999999884 566


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 018582          164 SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYL  243 (353)
Q Consensus       164 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~  243 (353)
                      .-+.|+.+|.+.++.++..++.+...+.....|   ....+..+.+.+-.++|..+-.....     +......+   +-
T Consensus       433 httlLLncYiKlkd~~kL~efI~~~~~g~~~fd---~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~il---le  501 (933)
T KOG2114|consen  433 HTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFD---VETALEILRKSNYLDEAELLATKFKK-----HEWVLDIL---LE  501 (933)
T ss_pred             hHHHHHHHHHHhcchHHHHHHHhcCCCcceeee---HHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHH---HH
Confidence            667899999999999998888776542211112   34566777777777777766554332     22222222   23


Q ss_pred             ccCChHHHHHHHHH
Q 018582          244 RNGDMKLAVDCLEK  257 (353)
Q Consensus       244 ~~~~~~~a~~~~~~  257 (353)
                      ..+++++|++++..
T Consensus       502 ~~~ny~eAl~yi~s  515 (933)
T KOG2114|consen  502 DLHNYEEALRYISS  515 (933)
T ss_pred             HhcCHHHHHHHHhc
Confidence            34566666655543

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=94.14  E-value=0.15  Score=26.53  Aligned_cols=23  Identities=17%  Similarity=0.338  Sum_probs=12.4

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHH
Q 018582          130 YQFLITLYGQTGNLSEVYRIWRS  152 (353)
Q Consensus       130 ~~~l~~~~~~~~~~~~a~~~~~~  152 (353)
                      |..|...|.+.|++++|+++|++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Confidence            44555555555555555555555

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=94.03  E-value=0.091  Score=26.98  Aligned_cols=24  Identities=29%  Similarity=0.577  Sum_probs=12.9

Q ss_pred             CCcHHHHHHHHHHHHhcCCHHHHH
Q 018582           89 AADWTTFSNLASIYVEAGLFEKAE  112 (353)
Q Consensus        89 ~~~~~~~~~l~~~~~~~~~~~~a~  112 (353)
                      |-+..+|+.+...|...|++++|+
T Consensus        10 P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen   10 PNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             CCCHHHHHHHHHHHHHCcCHHhhc
Confidence            444555555555555555555553

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=94.01  E-value=3.4  Score=35.07  Aligned_cols=124  Identities=7%  Similarity=-0.003  Sum_probs=63.3

Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---ChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCC-----
Q 018582          196 DIRVTNVMIGAYAKEGRLENAEELKERARRRGADP---NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGG-----  267 (353)
Q Consensus       196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----  267 (353)
                      ...+|..++..+.+.|+++.|...+.++...+..+   ++.....-+..+-..|+..+|+..++...........     
T Consensus       145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~  224 (352)
T PF02259_consen  145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN  224 (352)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence            44556666666666666666666666665432111   2223333344445556666666666665552111000     


Q ss_pred             ---------------CC-------cccHHHHHHHHHHHHhc------CChhhHHHHHHHHHhcCCCCChhhhHHHHHHHH
Q 018582          268 ---------------KW-------VPSSETIRTFMRHFEQE------KDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYA  319 (353)
Q Consensus       268 ---------------~~-------~~~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  319 (353)
                                     ..       ..-...+..+..-....      +..+++.+.|+...+..+ .....|..+...+.
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~k~~~~~a~~~~  303 (352)
T PF02259_consen  225 AELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDP-SWEKAWHSWALFND  303 (352)
T ss_pred             HHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhCh-hHHHHHHHHHHHHH
Confidence                           00       00012222222223333      677788888888887776 55566666666654


Q ss_pred             H
Q 018582          320 A  320 (353)
Q Consensus       320 ~  320 (353)
                      +
T Consensus       304 ~  304 (352)
T PF02259_consen  304 K  304 (352)
T ss_pred             H
Confidence            4

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=93.99  E-value=0.54  Score=30.73  Aligned_cols=59  Identities=19%  Similarity=0.300  Sum_probs=36.7

Q ss_pred             hHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 018582           39 KIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLA   99 (353)
Q Consensus        39 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~   99 (353)
                      ++.+-++.+....+.|++....+.+++|-+.+|+..|.++|+-++..  ...+...|..++
T Consensus        25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K--~~~~~~~y~~~l   83 (103)
T cd00923          25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK--CGAHKEIYPYIL   83 (103)
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccCchhhHHHHH
Confidence            34455555555566777777777777777777777777777766643  222344454443

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.98  E-value=2.6  Score=33.64  Aligned_cols=26  Identities=19%  Similarity=0.254  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHH
Q 018582          199 VTNVMIGAYAKEGRLENAEELKERAR  224 (353)
Q Consensus       199 ~~~~li~~~~~~g~~~~a~~~~~~~~  224 (353)
                      .|..=|+.|....+-.....+|++..
T Consensus       193 iYAlEIQmYT~qKnNKkLK~lYeqal  218 (440)
T KOG1464|consen  193 IYALEIQMYTEQKNNKKLKALYEQAL  218 (440)
T ss_pred             hHhhHhhhhhhhcccHHHHHHHHHHH
Confidence            34444445555555445555555433

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=93.92  E-value=0.16  Score=26.41  Aligned_cols=26  Identities=23%  Similarity=0.455  Sum_probs=18.7

Q ss_pred             hHHHHHHHHHccCChHHHHHHHHHHH
Q 018582          234 TWEIFSDYYLRNGDMKLAVDCLEKAI  259 (353)
Q Consensus       234 ~~~~li~~~~~~~~~~~a~~~~~~~~  259 (353)
                      +|..|...|.+.|++++|++++++.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            35677778888888888888888744

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=93.65  E-value=2.2  Score=32.45  Aligned_cols=89  Identities=13%  Similarity=0.136  Sum_probs=50.1

Q ss_pred             HHhcCChHHHHHHHHHHHhcCCCCC-----hhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc-HHHHHHHH
Q 018582          207 YAKEGRLENAEELKERARRRGADPN-----AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFM  280 (353)
Q Consensus       207 ~~~~g~~~~a~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~  280 (353)
                      +.+.|++++|..-|.+.++.- ++.     ...|..-..++.+.+.++.|++--.+.++.+        |+ ...+..-.
T Consensus       105 ~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--------pty~kAl~RRA  175 (271)
T KOG4234|consen  105 LFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--------PTYEKALERRA  175 (271)
T ss_pred             hhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--------chhHHHHHHHH
Confidence            345566666666666665541 111     1223333345556666666666666666665        43 33344445


Q ss_pred             HHHHhcCChhhHHHHHHHHHhcCC
Q 018582          281 RHFEQEKDVDGAEGFLEILKKAVD  304 (353)
Q Consensus       281 ~~~~~~~~~~~a~~~~~~~~~~~~  304 (353)
                      .+|.+...++.|+.-|+.+.+.+|
T Consensus       176 eayek~ek~eealeDyKki~E~dP  199 (271)
T KOG4234|consen  176 EAYEKMEKYEEALEDYKKILESDP  199 (271)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHhCc
Confidence            566666667777777777766665

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=93.53  E-value=0.13  Score=26.34  Aligned_cols=31  Identities=13%  Similarity=0.128  Sum_probs=24.3

Q ss_pred             HHHHHhcCCCCChhhhHHHHHHHHHcCCChHH
Q 018582          296 LEILKKAVDDLGVEVFEPLIRTYAAAGRTSPV  327 (353)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~  327 (353)
                      +++.++.+| .++.+|+.|...|...|+..++
T Consensus         2 y~kAie~~P-~n~~a~~nla~~~~~~g~~~~A   32 (34)
T PF13431_consen    2 YKKAIELNP-NNAEAYNNLANLYLNQGDYEEA   32 (34)
T ss_pred             hHHHHHHCC-CCHHHHHHHHHHHHHCcCHHhh
Confidence            566777787 8888888888888888886554

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=93.52  E-value=0.68  Score=30.27  Aligned_cols=64  Identities=19%  Similarity=0.206  Sum_probs=48.6

Q ss_pred             ChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHH
Q 018582          247 DMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRT  317 (353)
Q Consensus       247 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  317 (353)
                      |.-++.+-++.+....      ..|++.+..+-+++|.+.+++..|.++++-++.... .+...|..++.-
T Consensus        22 D~we~rr~mN~l~~~D------lVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~-~~~~~y~~~lqe   85 (103)
T cd00923          22 DGWELRRGLNNLFGYD------LVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG-AHKEIYPYILQE   85 (103)
T ss_pred             cHHHHHHHHHHHhccc------cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc-CchhhHHHHHHH
Confidence            3345566667777666      669999999999999999999999999998875443 345567666543

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=93.34  E-value=2.3  Score=31.05  Aligned_cols=51  Identities=22%  Similarity=0.094  Sum_probs=21.1

Q ss_pred             hcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 018582          104 EAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRL  155 (353)
Q Consensus       104 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  155 (353)
                      +.++.+++..++..+.-..+. ....-..-...+...|+|.+|..+|+.+..
T Consensus        22 ~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~   72 (160)
T PF09613_consen   22 RLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEE   72 (160)
T ss_pred             ccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence            444555555555555432221 111111112234445555555555555433

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=93.32  E-value=8.6  Score=37.55  Aligned_cols=128  Identities=13%  Similarity=0.073  Sum_probs=77.7

Q ss_pred             HHccCCHHHHHHHHHHHHHhCCCCChhH----HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC
Q 018582          137 YGQTGNLSEVYRIWRSLRLAFPNTANIS----YLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGR  212 (353)
Q Consensus       137 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  212 (353)
                      -.+.|.+.+|+.++        .|+...    |.+..+.+.....+++|--.|...-+.         ..-+.+|..+|+
T Consensus       918 I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~d  980 (1265)
T KOG1920|consen  918 IKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGD  980 (1265)
T ss_pred             HHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhcc
Confidence            33444555554443        345544    444455566677888887777664321         234677888888


Q ss_pred             hHHHHHHHHHHHhcCCCCCh--hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChh
Q 018582          213 LENAEELKERARRRGADPNA--KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVD  290 (353)
Q Consensus       213 ~~~a~~~~~~~~~~~~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  290 (353)
                      +.+|..+..++...   -+.  .+-..|+..+...+++-+|-++..+....         |.     ..+..+++...|+
T Consensus       981 Wr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---------~~-----~av~ll~ka~~~~ 1043 (1265)
T KOG1920|consen  981 WREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---------PE-----EAVALLCKAKEWE 1043 (1265)
T ss_pred             HHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---------HH-----HHHHHHhhHhHHH
Confidence            88888888876532   122  22256778888888888888888776654         21     1223344555667


Q ss_pred             hHHHHHHH
Q 018582          291 GAEGFLEI  298 (353)
Q Consensus       291 ~a~~~~~~  298 (353)
                      +|.++...
T Consensus      1044 eAlrva~~ 1051 (1265)
T KOG1920|consen 1044 EALRVASK 1051 (1265)
T ss_pred             HHHHHHHh
Confidence            77665544

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=93.26  E-value=1.6  Score=28.94  Aligned_cols=47  Identities=21%  Similarity=0.287  Sum_probs=24.6

Q ss_pred             CcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHH
Q 018582          269 WVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIR  316 (353)
Q Consensus       269 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  316 (353)
                      +.|++.+..+.+++|.+.+++..|.++++.++..-. +....|..+++
T Consensus        41 lVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~-~~~~~Y~~~lq   87 (108)
T PF02284_consen   41 LVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG-NKKEIYPYILQ   87 (108)
T ss_dssp             B---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT-T-TTHHHHHHH
T ss_pred             cCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc-ChHHHHHHHHH
Confidence            446666666666666666666666666666555333 22335555443

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.21  E-value=0.29  Score=24.82  Aligned_cols=30  Identities=17%  Similarity=0.424  Sum_probs=20.6

Q ss_pred             hhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582          233 KTWEIFSDYYLRNGDMKLAVDCLEKAIDTG  262 (353)
Q Consensus       233 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  262 (353)
                      .+|..+...|...|++++|++.|++.++..
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~   31 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELD   31 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence            356667777777777777777777777654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=93.08  E-value=4  Score=33.06  Aligned_cols=117  Identities=12%  Similarity=0.123  Sum_probs=80.3

Q ss_pred             CCHHHHHHHHHHHHH-ccCCCCHHHHHHHHHHHHc-cC-CHHHHHHHHHHHHHh-CCCCChhHHHHHHHHHHhcCChhHH
Q 018582          106 GLFEKAERALKELEN-RNAHRDLSAYQFLITLYGQ-TG-NLSEVYRIWRSLRLA-FPNTANISYLNMIQVLVNLKDLPGA  181 (353)
Q Consensus       106 ~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~-~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a  181 (353)
                      ..+.+|+++|+.... ..+-.|..+...+++.... .+ ....-.++.+-+... +..++..+...++..++..+++.+.
T Consensus       142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl  221 (292)
T PF13929_consen  142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL  221 (292)
T ss_pred             HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence            345667777774322 2344577777777777766 22 222233333333332 3556777888899999999999999


Q ss_pred             HHHHHHHHhc-CCCCcHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018582          182 EKCFKEWESG-CATYDIRVTNVMIGAYAKEGRLENAEELKER  222 (353)
Q Consensus       182 ~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  222 (353)
                      .+++...... ++..|.+.|..+|......|+..-...+.++
T Consensus       222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~  263 (292)
T PF13929_consen  222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD  263 (292)
T ss_pred             HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence            9998887755 5667888999999999999998877777665

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.00  E-value=2.8  Score=31.04  Aligned_cols=134  Identities=12%  Similarity=0.030  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChh-HHH--H
Q 018582           92 WTTFSNLASIYVEAGLFEKAERALKELENRNAHRD-LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANI-SYL--N  167 (353)
Q Consensus        92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~--~  167 (353)
                      ...|...++ +.+.+..++|+.-|..+.+.|...= +.............|+...|...|+++-.....|-.. -..  -
T Consensus        59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr  137 (221)
T COG4649          59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR  137 (221)
T ss_pred             hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence            334444443 3456778888888888877665411 1122223344567788888888888876654444332 111  1


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 018582          168 MIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRR  226 (353)
Q Consensus       168 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  226 (353)
                      -.-.+...|.++....-.+-+...+-+.-...-..|.-+-.+.|++..|...|..+...
T Consensus       138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D  196 (221)
T COG4649         138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND  196 (221)
T ss_pred             HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence            12234567777777666666554443333344455666666778888888888877654

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.87  E-value=0.35  Score=24.52  Aligned_cols=31  Identities=13%  Similarity=0.024  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 018582          274 ETIRTFMRHFEQEKDVDGAEGFLEILKKAVD  304 (353)
Q Consensus       274 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  304 (353)
                      .+|..+..++...|++++|...|++.++.+|
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p   32 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence            4688889999999999999999999998775

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=92.76  E-value=2.9  Score=30.58  Aligned_cols=17  Identities=18%  Similarity=0.395  Sum_probs=8.2

Q ss_pred             ccCCHHHHHHHHHHHHH
Q 018582          139 QTGNLSEVYRIWRSLRL  155 (353)
Q Consensus       139 ~~~~~~~a~~~~~~~~~  155 (353)
                      +.++.+++..++..+.-
T Consensus        22 ~~~~~~D~e~lL~ALrv   38 (160)
T PF09613_consen   22 RLGDPDDAEALLDALRV   38 (160)
T ss_pred             ccCChHHHHHHHHHHHH
Confidence            34455555555554443

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.69  E-value=0.44  Score=24.03  Aligned_cols=31  Identities=13%  Similarity=0.031  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 018582          274 ETIRTFMRHFEQEKDVDGAEGFLEILKKAVD  304 (353)
Q Consensus       274 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  304 (353)
                      ..+..+...+...|++++|.+.+++..+..|
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p   32 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence            4577788899999999999999999988776

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.56  E-value=8.6  Score=35.53  Aligned_cols=79  Identities=11%  Similarity=0.051  Sum_probs=43.4

Q ss_pred             hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhH
Q 018582          233 KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFE  312 (353)
Q Consensus       233 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  312 (353)
                      .+.+--+.-+...|+..+|.++-.+..          .||...|..-+.+++..++|++-+++-+..      ..+.-|.
T Consensus       685 lSl~dTv~~li~~g~~k~a~ql~~~Fk----------ipdKr~~wLk~~aLa~~~kweeLekfAksk------ksPIGy~  748 (829)
T KOG2280|consen  685 LSLHDTVTTLILIGQNKRAEQLKSDFK----------IPDKRLWWLKLTALADIKKWEELEKFAKSK------KSPIGYL  748 (829)
T ss_pred             CcHHHHHHHHHHccchHHHHHHHHhcC----------CcchhhHHHHHHHHHhhhhHHHHHHHHhcc------CCCCCch
Confidence            444455555566666666665554432          156666666666666666666655554432      1244455


Q ss_pred             HHHHHHHHcCCChHH
Q 018582          313 PLIRTYAAAGRTSPV  327 (353)
Q Consensus       313 ~l~~~~~~~g~~~~~  327 (353)
                      -.+.+|.+.|+..++
T Consensus       749 PFVe~c~~~~n~~EA  763 (829)
T KOG2280|consen  749 PFVEACLKQGNKDEA  763 (829)
T ss_pred             hHHHHHHhcccHHHH
Confidence            566666666664443

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.53  E-value=2.3  Score=34.75  Aligned_cols=100  Identities=13%  Similarity=0.141  Sum_probs=56.6

Q ss_pred             ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcC---CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHH
Q 018582          161 ANISYLNMIQVLVNLKDLPGAEKCFKEWESGC---ATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEI  237 (353)
Q Consensus       161 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~  237 (353)
                      ...+...++..-....+++.+...+-++....   ..++... .+.++.+.+ =+.++++.++..=.+.|+-||..+++.
T Consensus        63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~c~  140 (418)
T KOG4570|consen   63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTFCL  140 (418)
T ss_pred             ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHHc-cChHHHHHHHhCcchhccccchhhHHH
Confidence            34444555555555566666666666655321   1111111 122232222 345567776666667777777777777


Q ss_pred             HHHHHHccCChHHHHHHHHHHHHcC
Q 018582          238 FSDYYLRNGDMKLAVDCLEKAIDTG  262 (353)
Q Consensus       238 li~~~~~~~~~~~a~~~~~~~~~~~  262 (353)
                      +++.+.+.+++..|..+...|+...
T Consensus       141 l~D~flk~~n~~~aa~vvt~~~~qe  165 (418)
T KOG4570|consen  141 LMDSFLKKENYKDAASVVTEVMMQE  165 (418)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHH
Confidence            7777777777777777766666553

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=92.42  E-value=0.97  Score=34.32  Aligned_cols=82  Identities=11%  Similarity=0.090  Sum_probs=61.0

Q ss_pred             HHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCCcHHHHHHHHHHHHhcC
Q 018582           29 TLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDG--RVAADWTTFSNLASIYVEAG  106 (353)
Q Consensus        29 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~  106 (353)
                      -...+.|+ +.|+..|-.+...+.--+ ......+..|-...|.+++..++.+..+..  ...+|+.++.+|++.+.+.|
T Consensus       115 y~Wsr~~d-~~A~~~fL~~E~~~~l~t-~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~  192 (203)
T PF11207_consen  115 YHWSRFGD-QEALRRFLQLEGTPELET-AELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLK  192 (203)
T ss_pred             HHhhccCc-HHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhc
Confidence            34566665 679999988887764434 444444445556789999999998887632  13788999999999999999


Q ss_pred             CHHHHH
Q 018582          107 LFEKAE  112 (353)
Q Consensus       107 ~~~~a~  112 (353)
                      +++.|.
T Consensus       193 ~~e~AY  198 (203)
T PF11207_consen  193 NYEQAY  198 (203)
T ss_pred             chhhhh
Confidence            999885

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.31  E-value=0.095  Score=37.88  Aligned_cols=83  Identities=13%  Similarity=0.141  Sum_probs=48.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 018582           98 LASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKD  177 (353)
Q Consensus        98 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  177 (353)
                      ++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.       .+..-...++..|.+.|.
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l   85 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL   85 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence            5566666667777777777776655555566677777777777666666666551       111223345555555555


Q ss_pred             hhHHHHHHHH
Q 018582          178 LPGAEKCFKE  187 (353)
Q Consensus       178 ~~~a~~~~~~  187 (353)
                      ++++.-++.+
T Consensus        86 ~~~a~~Ly~~   95 (143)
T PF00637_consen   86 YEEAVYLYSK   95 (143)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHH
Confidence            5555555444

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.21  E-value=4.3  Score=33.24  Aligned_cols=105  Identities=12%  Similarity=0.158  Sum_probs=75.7

Q ss_pred             CCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCH
Q 018582           50 SSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGR--VAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDL  127 (353)
Q Consensus        50 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  127 (353)
                      .|.+.+..+...++....+..+++.+...+-+++....  ..|+... ...++.+. .-+.++++.++..=++.|+.||.
T Consensus        58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~dq  135 (418)
T KOG4570|consen   58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQ  135 (418)
T ss_pred             cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccch
Confidence            35566667777777777777888888888877765320  1222222 22344433 34677888888888889999999


Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHHh
Q 018582          128 SAYQFLITLYGQTGNLSEVYRIWRSLRLA  156 (353)
Q Consensus       128 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  156 (353)
                      .+++.+|+.+.+.+++.+|..+...|...
T Consensus       136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q  164 (418)
T KOG4570|consen  136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ  164 (418)
T ss_pred             hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            99999999999999999999888776554

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=92.17  E-value=4.4  Score=31.32  Aligned_cols=179  Identities=18%  Similarity=0.123  Sum_probs=103.4

Q ss_pred             CChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 018582           70 NDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRI  149 (353)
Q Consensus        70 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  149 (353)
                      |-+..|.-=|.+....  .|.-..+||.|.-.+...|+++.|.+.|+...+..+.-+-...|.-|. +.-.|++.-|.+-
T Consensus        79 GL~~LAR~DftQaLai--~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d  155 (297)
T COG4785          79 GLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDD  155 (297)
T ss_pred             hHHHHHhhhhhhhhhc--CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHH
Confidence            4444455555555553  234467889999999999999999999999988665544333333333 3346888888887


Q ss_pred             HHHHHHhCCCCChhHHHHHHHHH-HhcCChhHHHHHHHH-HHhcCCCCcHHHHHH-HHHHHHhcCChHHHHHHHHHHHhc
Q 018582          150 WRSLRLAFPNTANISYLNMIQVL-VNLKDLPGAEKCFKE-WESGCATYDIRVTNV-MIGAYAKEGRLENAEELKERARRR  226 (353)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~-li~~~~~~g~~~~a~~~~~~~~~~  226 (353)
                      +.+.-+..+. |+  |.++--.. -..-++.+|..-+.+ ..+.    |..-|.. ++..|...=..+.   +++++...
T Consensus       156 ~~~fYQ~D~~-DP--fR~LWLYl~E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS~e~---l~~~~~a~  225 (297)
T COG4785         156 LLAFYQDDPN-DP--FRSLWLYLNEQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKISEET---LMERLKAD  225 (297)
T ss_pred             HHHHHhcCCC-Ch--HHHHHHHHHHhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhccHHH---HHHHHHhh
Confidence            7776665442 22  22221111 223345555544433 3322    3233332 3334432222222   23333221


Q ss_pred             CCCC-------ChhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582          227 GADP-------NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG  262 (353)
Q Consensus       227 ~~~p-------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  262 (353)
                       -..       =+.||--+..-+...|+.++|..+|+-.+..+
T Consensus       226 -a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann  267 (297)
T COG4785         226 -ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN  267 (297)
T ss_pred             -ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence             111       13577788888899999999999999988876

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.03  E-value=0.52  Score=23.76  Aligned_cols=29  Identities=24%  Similarity=0.564  Sum_probs=19.1

Q ss_pred             hHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582          234 TWEIFSDYYLRNGDMKLAVDCLEKAIDTG  262 (353)
Q Consensus       234 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~  262 (353)
                      .|..+...+...|++++|++.|++.++..
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~   31 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALELD   31 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence            45556666777777777777777776654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=92.02  E-value=8.2  Score=34.06  Aligned_cols=180  Identities=14%  Similarity=0.123  Sum_probs=95.5

Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 018582          126 DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIG  205 (353)
Q Consensus       126 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~  205 (353)
                      |....-+++..+..+.++.-+..+-.+|..-|-  +...|..++++|... ..+.-..+|+++.+..+. |+..-..|..
T Consensus        65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~  140 (711)
T COG1747          65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD  140 (711)
T ss_pred             cchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence            444455566666666666666666666666542  455666666666666 455566666666665544 4444444444


Q ss_pred             HHHhcCChHHHHHHHHHHHhcCCCCC------hhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHH
Q 018582          206 AYAKEGRLENAEELKERARRRGADPN------AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTF  279 (353)
Q Consensus       206 ~~~~~g~~~~a~~~~~~~~~~~~~p~------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l  279 (353)
                      .|-+ ++.+.+...|......- .|.      -..|.-+...-  ..+.+..+.+..++....-     ...-...+..+
T Consensus       141 ~yEk-ik~sk~a~~f~Ka~yrf-I~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg-----~~~~~Vl~qdv  211 (711)
T COG1747         141 KYEK-IKKSKAAEFFGKALYRF-IPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLG-----EGRGSVLMQDV  211 (711)
T ss_pred             HHHH-hchhhHHHHHHHHHHHh-cchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhc-----cchHHHHHHHH
Confidence            4444 56666666666655431 110      12233332211  2345555555555544410     11223344444


Q ss_pred             HHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHH
Q 018582          280 MRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYA  319 (353)
Q Consensus       280 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  319 (353)
                      -.-|....++++|.+++..+.+.+. .|..+-..++.-+.
T Consensus       212 ~~~Ys~~eN~~eai~Ilk~il~~d~-k~~~ar~~~i~~lR  250 (711)
T COG1747         212 YKKYSENENWTEAIRILKHILEHDE-KDVWARKEIIENLR  250 (711)
T ss_pred             HHHhccccCHHHHHHHHHHHhhhcc-hhhhHHHHHHHHHH
Confidence            4556666777777777777766665 55555555554443

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=91.92  E-value=2.5  Score=28.04  Aligned_cols=60  Identities=5%  Similarity=0.045  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 018582          180 GAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSD  240 (353)
Q Consensus       180 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~  240 (353)
                      +..+-++.+......|++.+..+.+++|.+.+++..|.++|+.++.+ +.+....|..+++
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq   87 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ   87 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence            45555666666667777777777777777777777777777777654 2222235555443

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=91.91  E-value=3.3  Score=35.99  Aligned_cols=121  Identities=8%  Similarity=-0.062  Sum_probs=76.9

Q ss_pred             hcCChhHHHHHHHH-HHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHH
Q 018582          174 NLKDLPGAEKCFKE-WESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAV  252 (353)
Q Consensus       174 ~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~  252 (353)
                      ..|+.-.|.+-+.. +....-.|+....  ....+...|.++.+.+.+...... +.....+...+++.....|+++.|.
T Consensus       301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~  377 (831)
T PRK15180        301 ADGDIIAASQQLFAALRNQQQDPVLIQL--RSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL  377 (831)
T ss_pred             hccCHHHHHHHHHHHHHhCCCCchhhHH--HHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence            34555555443333 3333333443333  333456778888888888776543 3345667778888888888888888


Q ss_pred             HHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 018582          253 DCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD  304 (353)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  304 (353)
                      ..-..|+...+       .++.+...-.......|-++++.-.|+++...++
T Consensus       378 s~a~~~l~~ei-------e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~  422 (831)
T PRK15180        378 STAEMMLSNEI-------EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP  422 (831)
T ss_pred             HHHHHHhcccc-------CChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence            88888887764       3444444444445556778888888888877766

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=91.86  E-value=2.6  Score=32.07  Aligned_cols=77  Identities=14%  Similarity=0.117  Sum_probs=50.2

Q ss_pred             hHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhH
Q 018582          213 LENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGA  292 (353)
Q Consensus       213 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  292 (353)
                      -++|.+.|-.+...+.--++.....+...|. ..+.+++..++.+.++...+.   -.+|+..+.+|+..+.+.|+++.|
T Consensus       122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~---~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPD---DNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCC---CCCCHHHHHHHHHHHHHhcchhhh
Confidence            3567777777776654444444444444444 567788888888777763221   136778888888888888887776


Q ss_pred             H
Q 018582          293 E  293 (353)
Q Consensus       293 ~  293 (353)
                      .
T Consensus       198 Y  198 (203)
T PF11207_consen  198 Y  198 (203)
T ss_pred             h
Confidence            4

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=91.84  E-value=4.1  Score=30.20  Aligned_cols=136  Identities=13%  Similarity=0.092  Sum_probs=75.3

Q ss_pred             HHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 018582          112 ERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESG  191 (353)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  191 (353)
                      .+.++.+...++.|+...+..+++.+.+.|.+.....    +...++-+|.......+-.+.  +....+.++=-+|.+.
T Consensus        14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR   87 (167)
T PF07035_consen   14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR   87 (167)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence            3455556666777777777777777777777655443    334445555554443332222  2333444444444432


Q ss_pred             CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 018582          192 CATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDT  261 (353)
Q Consensus       192 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  261 (353)
                      - .   ..+..+++.+...|++-+|.++.+.....    +......++++-.+.+|...-..+++-..+.
T Consensus        88 L-~---~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~  149 (167)
T PF07035_consen   88 L-G---TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER  149 (167)
T ss_pred             h-h---hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            1 0   13455677777888888888877764322    2233345566666666655555555544443

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=91.74  E-value=8.2  Score=33.49  Aligned_cols=263  Identities=12%  Similarity=0.053  Sum_probs=119.7

Q ss_pred             HhcCCcchHHHHHHHHHHCCCCCCcch------HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHH--HH
Q 018582           32 AKTGHPEKIPAIIQEMKASSIMPDSYT------YNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASI--YV  103 (353)
Q Consensus        32 ~~~~~~~~a~~~~~~m~~~~~~p~~~~------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~  103 (353)
                      -+++++.+|.++|.+..+.. ..++..      -+.++++|.. ++++.....+....+..   |+. .|-.|..+  +-
T Consensus        17 qkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~---~~s-~~l~LF~~L~~Y   90 (549)
T PF07079_consen   17 QKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF---GKS-AYLPLFKALVAY   90 (549)
T ss_pred             HHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc---CCc-hHHHHHHHHHHH
Confidence            34666777777776665531 122121      2334444433 44555555555555532   211 22222222  23


Q ss_pred             hcCCHHHHHHHHHHHHHc--cCCC------------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC----CChhHH
Q 018582          104 EAGLFEKAERALKELENR--NAHR------------DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN----TANISY  165 (353)
Q Consensus       104 ~~~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~  165 (353)
                      +.+++++|.+.+..-...  +..+            |...=+..++.+...|++.++..+++++...-.+    -+..+|
T Consensus        91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y  170 (549)
T PF07079_consen   91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY  170 (549)
T ss_pred             HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence            556666666666554332  1111            1122234455666677777777777666544322    455566


Q ss_pred             HHHHHHHHhc--------CC-------hhHHHHHHHHHHhc------CCCCcHHHHHHHHHHHHhc--CChHHHHHHHHH
Q 018582          166 LNMIQVLVNL--------KD-------LPGAEKCFKEWESG------CATYDIRVTNVMIGAYAKE--GRLENAEELKER  222 (353)
Q Consensus       166 ~~l~~~~~~~--------~~-------~~~a~~~~~~~~~~------~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~  222 (353)
                      +.++-.+.++        ..       ++.+.-..++|...      .+-|.......+++...-.  .+..--.+++..
T Consensus       171 d~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~  250 (549)
T PF07079_consen  171 DRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILEN  250 (549)
T ss_pred             HHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHH
Confidence            6544333332        01       11111112222211      1233333334444333221  122222333333


Q ss_pred             HHhcCCCCChh-hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 018582          223 ARRRGADPNAK-TWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKK  301 (353)
Q Consensus       223 ~~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  301 (353)
                      ....-+.|+.. ....++..+..  +.+++..+-+.+....+.+-  ..--..++..++....+.++...|.+.+.-+.-
T Consensus       251 We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~L--ke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~  326 (549)
T PF07079_consen  251 WENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKL--KEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI  326 (549)
T ss_pred             HHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence            33333444432 23333444433  44555555444443321100  001245677777778888888888888877766


Q ss_pred             cCC
Q 018582          302 AVD  304 (353)
Q Consensus       302 ~~~  304 (353)
                      .+|
T Consensus       327 ldp  329 (549)
T PF07079_consen  327 LDP  329 (549)
T ss_pred             cCC
Confidence            655

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=91.07  E-value=10  Score=33.34  Aligned_cols=241  Identities=10%  Similarity=0.059  Sum_probs=136.7

Q ss_pred             HHHHHHHHHHCCCCCCcchHHHHHHHHHhcC------ChhHHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHhcCCHHH-H
Q 018582           40 IPAIIQEMKASSIMPDSYTYNVWMRALAAVN------DISGAERVIEEMKRDGRVAAD-WTTFSNLASIYVEAGLFEK-A  111 (353)
Q Consensus        40 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~------~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~-a  111 (353)
                      ...+|+...+  .-|+...|+..|..|...-      .+.....+++.....+...++ ...|..+.-.++....... |
T Consensus       301 ~~~v~ee~v~--~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a  378 (568)
T KOG2396|consen  301 CCAVYEEAVK--TLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVA  378 (568)
T ss_pred             HHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHH
Confidence            3456665554  2356666777777665432      344556666666654433333 3455556555555544332 3


Q ss_pred             HHHHHHHHHccCCCCHHHHHHHHHHHHcc-CCHHHH-HHHHHHHHHhCCCCChhHHHHHHHHHHhcCC-hhH--HHHHHH
Q 018582          112 ERALKELENRNAHRDLSAYQFLITLYGQT-GNLSEV-YRIWRSLRLAFPNTANISYLNMIQVLVNLKD-LPG--AEKCFK  186 (353)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~--a~~~~~  186 (353)
                      ..+.    ..++.-+...|..-+....+. .+++-. .+++..++..-..+-...|+...     .++ .+.  -..++.
T Consensus       379 ~~l~----~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~  449 (568)
T KOG2396|consen  379 VKLT----TELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIIS  449 (568)
T ss_pred             HHhh----HHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHH
Confidence            3333    223344565665555554432 122222 22233333322222223333333     122 111  112223


Q ss_pred             HHHhcCCCCcHHH-HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHH--ccCChHHHHHHHHHHHHc-C
Q 018582          187 EWESGCATYDIRV-TNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYL--RNGDMKLAVDCLEKAIDT-G  262 (353)
Q Consensus       187 ~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~--~~~~~~~a~~~~~~~~~~-~  262 (353)
                      ...+.+ .++..+ -+.+++.+.+.|-.++|..++..+... ++|+...|.-+|+.-.  ..-+..-+.++++.|... |
T Consensus       450 a~~s~~-~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg  527 (568)
T KOG2396|consen  450 ALLSVI-GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG  527 (568)
T ss_pred             HHHHhc-CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC
Confidence            333332 334333 367788888999999999999999887 5677888888876432  223477888999998887 5


Q ss_pred             CCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 018582          263 RGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKK  301 (353)
Q Consensus       263 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  301 (353)
                              .++..|...+.--...|..+.+-.++.++.+
T Consensus       528 --------~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k  558 (568)
T KOG2396|consen  528 --------ADSDLWMDYMKEELPLGRPENCGQIYWRAMK  558 (568)
T ss_pred             --------CChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence                    6788888888777789999988887766544

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=91.05  E-value=3.1  Score=32.12  Aligned_cols=77  Identities=14%  Similarity=0.063  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCChhhHHHHHHH
Q 018582          164 SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRR--GADPNAKTWEIFSDY  241 (353)
Q Consensus       164 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~li~~  241 (353)
                      |....++.+.+.+...+++...++-++..+. |...-..+++.+|-.|++++|..-++-.-+.  ...+-..+|..+|.+
T Consensus         3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~   81 (273)
T COG4455           3 TLRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC   81 (273)
T ss_pred             chHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence            3455667778888899998888887776644 6667777888999999999998777765543  123344566666654

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=90.84  E-value=15  Score=34.83  Aligned_cols=230  Identities=14%  Similarity=0.075  Sum_probs=118.8

Q ss_pred             HHhcCChhHHHHHHHHHHHcCCCCCc----HH---HHHHHH-HHHHhcCCHHHHHHHHHHHHHcc----CCCCHHHHHHH
Q 018582           66 LAAVNDISGAERVIEEMKRDGRVAAD----WT---TFSNLA-SIYVEAGLFEKAERALKELENRN----AHRDLSAYQFL  133 (353)
Q Consensus        66 ~~~~~~~~~a~~~~~~~~~~~~~~~~----~~---~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l  133 (353)
                      .....++.+|..+..++...- -.|+    ..   .++.|- ......|+++.|.++-+.....-    ..+....+..+
T Consensus       425 ~~s~~r~~ea~~li~~l~~~l-~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~  503 (894)
T COG2909         425 LASQHRLAEAETLIARLEHFL-KAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL  503 (894)
T ss_pred             HHHccChHHHHHHHHHHHHHh-CcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence            445678888888888776642 1111    11   222221 22345678888888777664422    22445666777


Q ss_pred             HHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHH-----HHHHhcCC--hhHHHHHHHHHHhc-----C-CCCcHHHH
Q 018582          134 ITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMI-----QVLVNLKD--LPGAEKCFKEWESG-----C-ATYDIRVT  200 (353)
Q Consensus       134 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~--~~~a~~~~~~~~~~-----~-~~~~~~~~  200 (353)
                      ..+..-.|++++|..+..+..+..-.-+...+....     ..+...|+  ..+....+......     . ..+-..++
T Consensus       504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r  583 (894)
T COG2909         504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR  583 (894)
T ss_pred             hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence            777778888888888877765542223333332222     23445552  22233333332211     1 01223444


Q ss_pred             HHHHHHHHhc-CChHHHHHHHHHHHhcCCCCChhhHH--HHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHH
Q 018582          201 NVMIGAYAKE-GRLENAEELKERARRRGADPNAKTWE--IFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIR  277 (353)
Q Consensus       201 ~~li~~~~~~-g~~~~a~~~~~~~~~~~~~p~~~~~~--~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (353)
                      ..+..++.+. +...++..-+.-.......|-.....  .|+......|+.++|...+.++......+.  ..++...-.
T Consensus       584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~--~~~~~~a~~  661 (894)
T COG2909         584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ--YHVDYLAAA  661 (894)
T ss_pred             HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC--CCchHHHHH
Confidence            5555555542 12222333333322232233223333  677788889999999999999887753321  122322222


Q ss_pred             HHHH--HHHhcCChhhHHHHHHH
Q 018582          278 TFMR--HFEQEKDVDGAEGFLEI  298 (353)
Q Consensus       278 ~l~~--~~~~~~~~~~a~~~~~~  298 (353)
                      ..+.  .....|+...+.....+
T Consensus       662 ~~v~~~lwl~qg~~~~a~~~l~~  684 (894)
T COG2909         662 YKVKLILWLAQGDKELAAEWLLK  684 (894)
T ss_pred             HHhhHHHhcccCCHHHHHHHHHh
Confidence            2222  33456777777666554

>PRK09687 putative lyase; Provisional

Probab=90.82  E-value=8  Score=31.69  Aligned_cols=218  Identities=13%  Similarity=0.001  Sum_probs=94.4

Q ss_pred             CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHccCCCCHHH
Q 018582           54 PDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLF----EKAERALKELENRNAHRDLSA  129 (353)
Q Consensus        54 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~  129 (353)
                      +|.......+.++...|.. .+...+..+..    .+|...-...+.++.+.|+.    +++...+..+...  .++...
T Consensus        35 ~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~----~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V  107 (280)
T PRK09687         35 HNSLKRISSIRVLQLRGGQ-DVFRLAIELCS----SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV  107 (280)
T ss_pred             CCHHHHHHHHHHHHhcCcc-hHHHHHHHHHh----CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence            4555555566666655542 23333333333    23444444556666666653    3455555554222  234444


Q ss_pred             HHHHHHHHHccCCH-----HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHH
Q 018582          130 YQFLITLYGQTGNL-----SEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMI  204 (353)
Q Consensus       130 ~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li  204 (353)
                      -...+.++...+..     ..+...+....   ..++..+-...+.++.+.++ +.+...+-.+.+.   +|..+-...+
T Consensus       108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~---~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~  180 (280)
T PRK09687        108 RASAINATGHRCKKNPLYSPKIVEQSQITA---FDKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAA  180 (280)
T ss_pred             HHHHHHHHhcccccccccchHHHHHHHHHh---hCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHH
Confidence            44444444443321     12222222221   12233444445555555544 2344444444332   1223333333


Q ss_pred             HHHHhcC-ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHH
Q 018582          205 GAYAKEG-RLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHF  283 (353)
Q Consensus       205 ~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  283 (353)
                      .++.+.+ ..+.+...+..+..   .++..+-...+.++.+.++ ..|+..+-+..+.+         +  .....+.++
T Consensus       181 ~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---------~--~~~~a~~AL  245 (280)
T PRK09687        181 FALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---------T--VGDLIIEAA  245 (280)
T ss_pred             HHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---------c--hHHHHHHHH
Confidence            4444332 12344444444442   2344455555555555555 34444444444432         1  122344555


Q ss_pred             HhcCChhhHHHHHHHHHh
Q 018582          284 EQEKDVDGAEGFLEILKK  301 (353)
Q Consensus       284 ~~~~~~~~a~~~~~~~~~  301 (353)
                      ...|+. +|...+..+.+
T Consensus       246 g~ig~~-~a~p~L~~l~~  262 (280)
T PRK09687        246 GELGDK-TLLPVLDTLLY  262 (280)
T ss_pred             HhcCCH-hHHHHHHHHHh
Confidence            555553 45555555444

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=90.72  E-value=7.9  Score=31.45  Aligned_cols=138  Identities=9%  Similarity=0.141  Sum_probs=94.1

Q ss_pred             CChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHh-cCC-HHHHHHHHHHHH-HccCCCCHHHHHHHHHHHHccCCHHHH
Q 018582           70 NDISGAERVIEEMKRDGRVAADWTTFSNLASIYVE-AGL-FEKAERALKELE-NRNAHRDLSAYQFLITLYGQTGNLSEV  146 (353)
Q Consensus        70 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~-~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a  146 (353)
                      ..+.+|+++|+.....+.+--|..+...+++.... .+. ...-.++.+-+. ..+..++..+...++..++..++|.+.
T Consensus       142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl  221 (292)
T PF13929_consen  142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL  221 (292)
T ss_pred             HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence            34566777777332212266677787888887776 322 223334444443 233557788889999999999999999


Q ss_pred             HHHHHHHHHh-CCCCChhHHHHHHHHHHhcCChhHHHHHHHH-----HHhcCCCCcHHHHHHHHHHH
Q 018582          147 YRIWRSLRLA-FPNTANISYLNMIQVLVNLKDLPGAEKCFKE-----WESGCATYDIRVTNVMIGAY  207 (353)
Q Consensus       147 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~li~~~  207 (353)
                      .++++..... ++..|...|...|......|+..-..++.++     +...++..+...-..+-+.+
T Consensus       222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF  288 (292)
T PF13929_consen  222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF  288 (292)
T ss_pred             HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence            9999987655 6667888999999999999998888777766     33455555555544444443

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=90.53  E-value=1.1  Score=36.93  Aligned_cols=68  Identities=19%  Similarity=0.244  Sum_probs=49.5

Q ss_pred             HHHHccCChHHHHHHHHHHHHcCCCCCCCCcc-cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHH
Q 018582          240 DYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTY  318 (353)
Q Consensus       240 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  318 (353)
                      ..|.+.|.+++|+++|.+.+...        | ++.++..-..+|.+...+..|+.-....+..+-        ..+.+|
T Consensus       105 N~yFKQgKy~EAIDCYs~~ia~~--------P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~--------~Y~KAY  168 (536)
T KOG4648|consen  105 NTYFKQGKYEEAIDCYSTAIAVY--------PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK--------LYVKAY  168 (536)
T ss_pred             hhhhhccchhHHHHHhhhhhccC--------CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH--------HHHHHH
Confidence            45778899999999998887765        6 777787888888888888888777766665443        344555


Q ss_pred             HHcCC
Q 018582          319 AAAGR  323 (353)
Q Consensus       319 ~~~g~  323 (353)
                      ++.+.
T Consensus       169 SRR~~  173 (536)
T KOG4648|consen  169 SRRMQ  173 (536)
T ss_pred             HHHHH
Confidence            55444

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.46  E-value=6.3  Score=29.90  Aligned_cols=88  Identities=13%  Similarity=0.057  Sum_probs=47.5

Q ss_pred             HHHHhcCChHHHHHHHHHHHhcCCCCChhhHH-----HHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHH
Q 018582          205 GAYAKEGRLENAEELKERARRRGADPNAKTWE-----IFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTF  279 (353)
Q Consensus       205 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l  279 (353)
                      ..+...|++++|..-++.....   |....+.     .|.+.....|.+++|+..++.....+        ........-
T Consensus        97 k~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~--------w~~~~~elr  165 (207)
T COG2976          97 KAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES--------WAAIVAELR  165 (207)
T ss_pred             HHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc--------HHHHHHHHh
Confidence            4455566666666666655532   1222222     23344556666666666666655443        233333344


Q ss_pred             HHHHHhcCChhhHHHHHHHHHhcC
Q 018582          280 MRHFEQEKDVDGAEGFLEILKKAV  303 (353)
Q Consensus       280 ~~~~~~~~~~~~a~~~~~~~~~~~  303 (353)
                      .+.+...|+-++|+.-|+...+.+
T Consensus       166 GDill~kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         166 GDILLAKGDKQEARAAYEKALESD  189 (207)
T ss_pred             hhHHHHcCchHHHHHHHHHHHHcc
Confidence            455666666677766666666654

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=90.33  E-value=0.93  Score=24.08  Aligned_cols=26  Identities=19%  Similarity=0.253  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHH
Q 018582          129 AYQFLITLYGQTGNLSEVYRIWRSLR  154 (353)
Q Consensus       129 ~~~~l~~~~~~~~~~~~a~~~~~~~~  154 (353)
                      +++.|...|...|++++|..++++..
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al   29 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEAL   29 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence            45555555666666666666555543

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=90.21  E-value=1.1  Score=23.86  Aligned_cols=29  Identities=31%  Similarity=0.416  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 018582           92 WTTFSNLASIYVEAGLFEKAERALKELEN  120 (353)
Q Consensus        92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  120 (353)
                      ..+++.|...|...|++++|..++++...
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            35678888999999999999998888754

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.02  E-value=9.6  Score=34.37  Aligned_cols=148  Identities=16%  Similarity=0.029  Sum_probs=75.7

Q ss_pred             cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHH
Q 018582          105 AGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKC  184 (353)
Q Consensus       105 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  184 (353)
                      .|+++.|..++..+.       ....+.++..+.+.|-.++|+++-         +|...   -.....+.|+++.|.++
T Consensus       599 rrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~l  659 (794)
T KOG0276|consen  599 RRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFDL  659 (794)
T ss_pred             hccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHHH
Confidence            455555554443321       223445555566666666665431         22211   12223455666666665


Q ss_pred             HHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCC
Q 018582          185 FKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRG  264 (353)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~  264 (353)
                      ..+..      +..-|..|.++....|++..|.+.|.+...         |..|+-.+...|+-+....+-....+.|. 
T Consensus       660 a~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~-  723 (794)
T KOG0276|consen  660 AVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK-  723 (794)
T ss_pred             HHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc-
Confidence            55422      445566677777777777777766665432         33455555555665555555555555541 


Q ss_pred             CCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHH
Q 018582          265 DGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEI  298 (353)
Q Consensus       265 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  298 (353)
                            .     |.-.-+|...|+++++.+++..
T Consensus       724 ------~-----N~AF~~~~l~g~~~~C~~lLi~  746 (794)
T KOG0276|consen  724 ------N-----NLAFLAYFLSGDYEECLELLIS  746 (794)
T ss_pred             ------c-----chHHHHHHHcCCHHHHHHHHHh
Confidence                  1     2222344556666666666543

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=90.00  E-value=7.6  Score=30.11  Aligned_cols=205  Identities=13%  Similarity=0.050  Sum_probs=110.4

Q ss_pred             CCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHH
Q 018582          106 GLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCF  185 (353)
Q Consensus       106 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  185 (353)
                      |-+.-|.-=|.+.....+. -+.+||.+.--+...|+++.|.+.|+...+-.+.- ..+...-.-++.-.|++.-|.+-+
T Consensus        79 GL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y-~Ya~lNRgi~~YY~gR~~LAq~d~  156 (297)
T COG4785          79 GLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-NYAHLNRGIALYYGGRYKLAQDDL  156 (297)
T ss_pred             hHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc-hHHHhccceeeeecCchHhhHHHH
Confidence            3333344344443332222 35689999888999999999999999987765532 222222222334568888888777


Q ss_pred             HHHHhcCCC-CcHHHHHHHHHHHHhcCChHHHHHHH-HHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 018582          186 KEWESGCAT-YDIRVTNVMIGAYAKEGRLENAEELK-ERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGR  263 (353)
Q Consensus       186 ~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~-~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~  263 (353)
                      ...-+.++. |-...|--++.   ..-++.+|..-+ ++....    |..-|...|-.|.-..--  ...+++++.....
T Consensus       157 ~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS--~e~l~~~~~a~a~  227 (297)
T COG4785         157 LAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKIS--EETLMERLKADAT  227 (297)
T ss_pred             HHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhcc--HHHHHHHHHhhcc
Confidence            766655432 22222322221   223555665443 333332    445555544443221111  1223333333210


Q ss_pred             CCCCCC-cccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCC
Q 018582          264 GDGGKW-VPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR  323 (353)
Q Consensus       264 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  323 (353)
                      . .... ..-..||-.+..-+...|+.++|..+|+-....++ -+-+-+.--+--+.+.++
T Consensus       228 ~-n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV-ynfVE~RyA~~EL~~l~q  286 (297)
T COG4785         228 D-NTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV-YNFVEHRYALLELSLLGQ  286 (297)
T ss_pred             c-hHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHhcc
Confidence            0 0000 01245677788888999999999999998887666 444444443333444444

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=89.81  E-value=15  Score=33.12  Aligned_cols=103  Identities=15%  Similarity=0.147  Sum_probs=63.3

Q ss_pred             cCChHHHHHHHHHHHhcCCCCChhh-HHHHHHHHHccCChHHHH---HHHHHHHHcCCCCCCCCcccHHHHHHH----HH
Q 018582          210 EGRLENAEELKERARRRGADPNAKT-WEIFSDYYLRNGDMKLAV---DCLEKAIDTGRGDGGKWVPSSETIRTF----MR  281 (353)
Q Consensus       210 ~g~~~~a~~~~~~~~~~~~~p~~~~-~~~li~~~~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~  281 (353)
                      .|++..|..+++.+.+.-  |+..- -..-+....+.|..+.+.   +++.......        -+..+...+    .+
T Consensus       379 ~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~--------~~~~i~~~l~~~~~r  448 (577)
T KOG1258|consen  379 NGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK--------ENNGILEKLYVKFAR  448 (577)
T ss_pred             hccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc--------cCcchhHHHHHHHHH
Confidence            467888888888877652  44322 112233345566666666   3332222211        222222222    22


Q ss_pred             -HHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCC
Q 018582          282 -HFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR  323 (353)
Q Consensus       282 -~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  323 (353)
                       .+.-.++.+.|..++.++.+..+ ++...|..+++.....+.
T Consensus       449 ~~~~i~~d~~~a~~~l~~~~~~~~-~~k~~~~~~~~~~~~~~~  490 (577)
T KOG1258|consen  449 LRYKIREDADLARIILLEANDILP-DCKVLYLELIRFELIQPS  490 (577)
T ss_pred             HHHHHhcCHHHHHHHHHHhhhcCC-ccHHHHHHHHHHHHhCCc
Confidence             23447889999999999999988 999999999998877774

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=89.76  E-value=11  Score=31.83  Aligned_cols=66  Identities=11%  Similarity=-0.029  Sum_probs=47.5

Q ss_pred             CChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC---cHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 018582          160 TANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATY---DIRVTNVMIGAYAKEGRLENAEELKERARR  225 (353)
Q Consensus       160 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  225 (353)
                      ....+|..+...+.+.|+++.|...+..+...+...   .+.+...-+...-..|+..+|...++....
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344577888888889999999998888887644221   334444556667778888888888877766

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=89.74  E-value=6  Score=31.89  Aligned_cols=87  Identities=13%  Similarity=0.077  Sum_probs=40.0

Q ss_pred             HHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh----
Q 018582          134 ITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAK----  209 (353)
Q Consensus       134 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----  209 (353)
                      |+++...++|.+++...-+.-+.--+........-|-.|.+.+.+..+.++-.......-.-+..-|.++++.|..    
T Consensus        90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl  169 (309)
T PF07163_consen   90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL  169 (309)
T ss_pred             HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence            4455555555555544333322111112233334444555666665555555555433222233335555544443    


Q ss_pred             -cCChHHHHHHH
Q 018582          210 -EGRLENAEELK  220 (353)
Q Consensus       210 -~g~~~~a~~~~  220 (353)
                       .|.+++|+++.
T Consensus       170 PLG~~~eAeelv  181 (309)
T PF07163_consen  170 PLGHFSEAEELV  181 (309)
T ss_pred             ccccHHHHHHHH
Confidence             36666666554

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=89.23  E-value=3.6  Score=31.82  Aligned_cols=57  Identities=19%  Similarity=0.091  Sum_probs=29.6

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018582           60 NVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKEL  118 (353)
Q Consensus        60 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  118 (353)
                      +..++.+.+.+++.+++...++-++.  .+.|...-..+++.++-.|++++|..-++-.
T Consensus         5 ~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~   61 (273)
T COG4455           5 RDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLA   61 (273)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence            33444455555555555555554443  3444444445555556666666555555444

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=89.02  E-value=8.6  Score=29.39  Aligned_cols=90  Identities=19%  Similarity=0.131  Sum_probs=52.7

Q ss_pred             HHHccCCHHHHHHHHHHHHHhCCCCCh----hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC
Q 018582          136 LYGQTGNLSEVYRIWRSLRLAFPNTAN----ISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEG  211 (353)
Q Consensus       136 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  211 (353)
                      -+...|++++|..-|......-+....    ..|..-..++.+.+.++.|..--.+.++.++. .......-..+|.+..
T Consensus       104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~e  182 (271)
T KOG4234|consen  104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKME  182 (271)
T ss_pred             HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhh
Confidence            355667777777777776665332211    23444445666677777776666666655533 2222233345666677


Q ss_pred             ChHHHHHHHHHHHhc
Q 018582          212 RLENAEELKERARRR  226 (353)
Q Consensus       212 ~~~~a~~~~~~~~~~  226 (353)
                      .+++|+.=|+.+.+.
T Consensus       183 k~eealeDyKki~E~  197 (271)
T KOG4234|consen  183 KYEEALEDYKKILES  197 (271)
T ss_pred             hHHHHHHHHHHHHHh
Confidence            777777777777765

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=88.96  E-value=15  Score=32.18  Aligned_cols=120  Identities=14%  Similarity=0.095  Sum_probs=68.9

Q ss_pred             HhcCCHHHHH-HHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHH
Q 018582          103 VEAGLFEKAE-RALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGA  181 (353)
Q Consensus       103 ~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  181 (353)
                      ...|++-.|- +++..+......|+......  ......|+++.+...+...... +.....+...++....+.|++++|
T Consensus       300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a  376 (831)
T PRK15180        300 LADGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA  376 (831)
T ss_pred             hhccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence            3455555543 34444443333344333333  3345567777777776655433 223445667777777777888888


Q ss_pred             HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 018582          182 EKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRR  226 (353)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  226 (353)
                      ...-..|....+. +..+.......-...|-++++...++++...
T Consensus       377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~  420 (831)
T PRK15180        377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL  420 (831)
T ss_pred             HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence            7777777766655 4444443333344556677777777776654

>PRK09687 putative lyase; Provisional

Probab=88.78  E-value=12  Score=30.71  Aligned_cols=234  Identities=9%  Similarity=0.002  Sum_probs=150.7

Q ss_pred             CCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCh----hHHHHHHHHHHHcCCCCCcHHH
Q 018582           19 FSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDI----SGAERVIEEMKRDGRVAADWTT   94 (353)
Q Consensus        19 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~   94 (353)
                      +|.......+..+...|. +.+...+..+...   +|...-...+.++++.|+.    .++...+..+..   ..++..+
T Consensus        35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~---~D~d~~V  107 (280)
T PRK09687         35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLAL---EDKSACV  107 (280)
T ss_pred             CCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHh---cCCCHHH
Confidence            566667777777777775 4566666666543   4666666677788888874    467777777644   3467777


Q ss_pred             HHHHHHHHHhcCCH-----HHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHH
Q 018582           95 FSNLASIYVEAGLF-----EKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMI  169 (353)
Q Consensus        95 ~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  169 (353)
                      -...+.++...+..     ..+...+.....   .++..+-...+.++.+.++ ++++..+-.+...   ++...-...+
T Consensus       108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~  180 (280)
T PRK09687        108 RASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAA  180 (280)
T ss_pred             HHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHH
Confidence            66777777665432     223333333332   3466677778888888886 4566666665542   4445555566


Q ss_pred             HHHHhcC-ChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCh
Q 018582          170 QVLVNLK-DLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDM  248 (353)
Q Consensus       170 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~  248 (353)
                      .++.+.+ +.+.+...+..+..   .++..+-...+.++.+.|. ..+...+-...+.+   +  .....+.++...|+.
T Consensus       181 ~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~  251 (280)
T PRK09687        181 FALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK  251 (280)
T ss_pred             HHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH
Confidence            6666553 24456666666663   4466777788888988888 46666666666543   2  345678888999985


Q ss_pred             HHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHH
Q 018582          249 KLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFE  284 (353)
Q Consensus       249 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  284 (353)
                       +|+..+..+.+..        ||..+-...+.++.
T Consensus       252 -~a~p~L~~l~~~~--------~d~~v~~~a~~a~~  278 (280)
T PRK09687        252 -TLLPVLDTLLYKF--------DDNEIITKAIDKLK  278 (280)
T ss_pred             -hHHHHHHHHHhhC--------CChhHHHHHHHHHh
Confidence             6899999988865        77776666665553

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.53  E-value=24  Score=33.93  Aligned_cols=193  Identities=13%  Similarity=0.033  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHHhCC---CCChhHHHHHHHHHHhcCCh--hHHHHHHHHHHhcCCCCcHHHHHH-
Q 018582          129 AYQFLITLYGQTGNLSEVYRIWRSLRLAFP---NTANISYLNMIQVLVNLKDL--PGAEKCFKEWESGCATYDIRVTNV-  202 (353)
Q Consensus       129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~-  202 (353)
                      -|..|+..|...|+.++|+++|.......-   .--...+..++..+-+.+..  +-..++-+......+.-...++.. 
T Consensus       506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~  585 (877)
T KOG2063|consen  506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE  585 (877)
T ss_pred             cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence            588899999999999999999999866321   11112333456666555554  445554444443332211111111 


Q ss_pred             -----------HHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccC--------ChHHHHHH-----HHHH
Q 018582          203 -----------MIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNG--------DMKLAVDC-----LEKA  258 (353)
Q Consensus       203 -----------li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~--------~~~~a~~~-----~~~~  258 (353)
                                 -+-.|......+-+...++.+....-.++....+.++..|++.=        .-+++.+.     +..+
T Consensus       586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~  665 (877)
T KOG2063|consen  586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDF  665 (877)
T ss_pred             ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHH
Confidence                       23345566677788888888886655567777777877775421        11222222     2222


Q ss_pred             HHc--CCCCCCC--CcccHHHHHHHHHHHHhcCChhhHHHHHHHHHh-------------cCCCCChhhhHHHHHHHHHc
Q 018582          259 IDT--GRGDGGK--WVPSSETIRTFMRHFEQEKDVDGAEGFLEILKK-------------AVDDLGVEVFEPLIRTYAAA  321 (353)
Q Consensus       259 ~~~--~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------------~~~~~~~~~~~~l~~~~~~~  321 (353)
                      ...  ...|+..  ..|....|.-..-.+.+.|+.++|..++-....             ....++...|..++..|...
T Consensus       666 l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~l~~  745 (877)
T KOG2063|consen  666 LESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLRIYLNP  745 (877)
T ss_pred             hhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHHHHhcc
Confidence            222  2222111  112223333333334578888888887665443             12335788899999998877

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=88.46  E-value=1.2  Score=22.46  Aligned_cols=31  Identities=19%  Similarity=0.168  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 018582          274 ETIRTFMRHFEQEKDVDGAEGFLEILKKAVD  304 (353)
Q Consensus       274 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  304 (353)
                      .+|..+...|...|++++|.+.|++..+..+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            4677788899999999999999999887654

...

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=88.03  E-value=13  Score=30.28  Aligned_cols=71  Identities=10%  Similarity=0.056  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChHHH--H-----HHHHhCCCccCHhHHHH
Q 018582          275 TIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVM--L-----RRLKMEKVEVSEASKKL  346 (353)
Q Consensus       275 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~--~-----~~m~~~~~~p~~~~~~~  346 (353)
                      ++....+.|..+|.+.+|.++.++....++ .+...|..|+..+...|+.-.+.  +     ..-...|+..|......
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsieew  358 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEEW  358 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHHH
Confidence            455566788999999999999999999999 99999999999999999932222  2     22235588887766554

>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat

Probab=87.99  E-value=3.5  Score=26.48  Aligned_cols=65  Identities=15%  Similarity=0.110  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 018582           40 IPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKA  111 (353)
Q Consensus        40 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  111 (353)
                      +.++++.+.+.|+ .+......+-.+-...|+.+.|.+++..+. +|   |+  .|..+++++.+.|.-+-|
T Consensus        21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg---~~--aF~~Fl~aLreT~~~~LA   85 (88)
T cd08819          21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QK---EG--WFSKFLQALRETEHHELA   85 (88)
T ss_pred             HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC---Cc--HHHHHHHHHHHcCchhhh
Confidence            4455566655552 222222222222224466666666666666 44   33  344666666666655444

Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=87.84  E-value=5.9  Score=35.50  Aligned_cols=151  Identities=12%  Similarity=0.107  Sum_probs=94.5

Q ss_pred             CCcchHHHHHHHHHhcC--ChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHH
Q 018582           54 PDSYTYNVWMRALAAVN--DISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQ  131 (353)
Q Consensus        54 p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  131 (353)
                      |+..+..+++.-....-  .-+-+-.++..|..-  ..|-+.+.|...-.+.-.|+...|.+.+.......+.-.-+..-
T Consensus       569 ~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~~--~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v  646 (886)
T KOG4507|consen  569 PDDHARKILLSRINNYTIPEEEIGSFLFHAINKP--NAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLV  646 (886)
T ss_pred             chHHHHHHHHHHHhcccCcHHHHHHHHHHHhcCC--CCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHH
Confidence            55555555544332221  122233344444332  55666665655555556788888888888775544444445566


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 018582          132 FLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYA  208 (353)
Q Consensus       132 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  208 (353)
                      .|.+.+.+.|...+|-.++.+..... ...+-++..+.+++.-..+.++|.+.|++..+.... +...-+.|...-|
T Consensus       647 ~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~-~~~~~~~l~~i~c  721 (886)
T KOG4507|consen  647 NLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTK-CPECENSLKLIRC  721 (886)
T ss_pred             HHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCC-ChhhHHHHHHHHH
Confidence            67777777888888888887766554 234456777888888888999999999888877643 5666666555444

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=87.82  E-value=1  Score=22.39  Aligned_cols=26  Identities=19%  Similarity=0.378  Sum_probs=17.3

Q ss_pred             HHHHHHHccCChHHHHHHHHHHHHcC
Q 018582          237 IFSDYYLRNGDMKLAVDCLEKAIDTG  262 (353)
Q Consensus       237 ~li~~~~~~~~~~~a~~~~~~~~~~~  262 (353)
                      .+..++.+.|++++|.+.|+++++..
T Consensus         5 ~~a~~~~~~g~~~~A~~~~~~~~~~~   30 (33)
T PF13174_consen    5 RLARCYYKLGDYDEAIEYFQRLIKRY   30 (33)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHC
Confidence            34555666677777777777777664

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=87.54  E-value=24  Score=32.81  Aligned_cols=187  Identities=11%  Similarity=0.065  Sum_probs=111.3

Q ss_pred             hHHHHHHHHHHH-hcCCCCC--chhHHHHHHHHH-hcCCcchHHHHHHHHHHCCCCCCcc-----hHHHHHHHHHhcCCh
Q 018582            2 TEKAEALLEKMK-ELNLGFS--SMPFNSLMTLYA-KTGHPEKIPAIIQEMKASSIMPDSY-----TYNVWMRALAAVNDI   72 (353)
Q Consensus         2 ~~~A~~~~~~m~-~~~~~~~--~~~~~~ll~~~~-~~~~~~~a~~~~~~m~~~~~~p~~~-----~~~~ll~~~~~~~~~   72 (353)
                      +.-|++.++.+. +..++|.  +.++-.+...+. ...+++.|...+++.....-+++..     .-..+++.+.+.+..
T Consensus        37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~  116 (608)
T PF10345_consen   37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK  116 (608)
T ss_pred             HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence            345677788887 4444443  345566666665 6789999999999876543223322     123455666666655


Q ss_pred             hHHHHHHHHHHHcCC---CCCcHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcc---CCCCHHHHHHHHHHHH--ccCCH
Q 018582           73 SGAERVIEEMKRDGR---VAADWTTFSNL-ASIYVEAGLFEKAERALKELENRN---AHRDLSAYQFLITLYG--QTGNL  143 (353)
Q Consensus        73 ~~a~~~~~~~~~~~~---~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~~~~  143 (353)
                      . |...+++.++.-.   ..+-...|..+ +..+...++...|.+.++.+...-   ..|-...+..++.+..  +.+.+
T Consensus       117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~  195 (608)
T PF10345_consen  117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP  195 (608)
T ss_pred             H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence            5 9998888776421   11222333434 334444489999999999885432   2233444444554443  45667


Q ss_pred             HHHHHHHHHHHHhCC---------CCChhHHHHHHHHHH--hcCChhHHHHHHHHHH
Q 018582          144 SEVYRIWRSLRLAFP---------NTANISYLNMIQVLV--NLKDLPGAEKCFKEWE  189 (353)
Q Consensus       144 ~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~  189 (353)
                      +++.+.++++.....         .|...+|..+++.++  ..|+++.+...++++.
T Consensus       196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq  252 (608)
T PF10345_consen  196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ  252 (608)
T ss_pred             hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            788888877643322         234556777766654  5677667766665543

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]

Probab=87.49  E-value=4.3  Score=28.17  Aligned_cols=45  Identities=9%  Similarity=0.103  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 018582           75 AERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELEN  120 (353)
Q Consensus        75 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  120 (353)
                      ..+-+..+.... +.|+..+....++++.+.+|+..|.++|+-++.
T Consensus        68 vrkglN~l~~yD-lVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~  112 (149)
T KOG4077|consen   68 VRKGLNNLFDYD-LVPSPKVIEAALRACRRVNDFATAVRILEAIKD  112 (149)
T ss_pred             HHHHHHhhhccc-cCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            344444555544 666666666667777777777777777766644

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=87.33  E-value=9  Score=27.67  Aligned_cols=50  Identities=8%  Similarity=0.004  Sum_probs=21.6

Q ss_pred             cCChhHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 018582          175 LKDLPGAEKCFKEWESGCAT-YDIRVTNVMIGAYAKEGRLENAEELKERARRR  226 (353)
Q Consensus       175 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  226 (353)
                      .++.+++..+++.+.-..+. +...++.  ...+...|++.+|.++|+++.+.
T Consensus        23 ~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~   73 (153)
T TIGR02561        23 SADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSS   73 (153)
T ss_pred             cCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhcc
Confidence            45555555555554432221 1222222  22234455555555555555543

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=87.31  E-value=1.2  Score=22.11  Aligned_cols=29  Identities=21%  Similarity=0.243  Sum_probs=24.2

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 018582          276 IRTFMRHFEQEKDVDGAEGFLEILKKAVD  304 (353)
Q Consensus       276 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  304 (353)
                      +-.+..++.+.|++++|.+.|+++.+.-|
T Consensus         3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P   31 (33)
T PF13174_consen    3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP   31 (33)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence            44567788889999999999999988665

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=87.30  E-value=13  Score=30.04  Aligned_cols=121  Identities=12%  Similarity=0.003  Sum_probs=76.3

Q ss_pred             HHHHhcCCcchHHHHHHHHHHC-----CCCCCcc--------hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHH
Q 018582           29 TLYAKTGHPEKIPAIIQEMKAS-----SIMPDSY--------TYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTF   95 (353)
Q Consensus        29 ~~~~~~~~~~~a~~~~~~m~~~-----~~~p~~~--------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   95 (353)
                      +...-..+|..|++..++-.+.     +...+..        ....=|.+++..+++.++....-+-.+.. .+.-..+.
T Consensus        43 d~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~p-EklPpkIl  121 (309)
T PF07163_consen   43 DLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVP-EKLPPKIL  121 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCc-ccCCHHHH
Confidence            3344567888888887776542     1111211        12334678888888888877665554432 23334455


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHc-----cCCHHHHHHHH
Q 018582           96 SNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQ-----TGNLSEVYRIW  150 (353)
Q Consensus        96 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~  150 (353)
                      ..-|-.|.+.+++..+.++-..-.+..-..+...|..++..|..     .|.+++|+++.
T Consensus       122 eLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv  181 (309)
T PF07163_consen  122 ELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV  181 (309)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence            66677788889988888888877654333344557776666554     68888888776

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=87.24  E-value=5.3  Score=33.18  Aligned_cols=51  Identities=18%  Similarity=0.066  Sum_probs=24.6

Q ss_pred             HHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHH
Q 018582          170 QVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKE  221 (353)
Q Consensus       170 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  221 (353)
                      +-|.+.|++++|...|....... +.|.+++..-..+|.+..++..|..=..
T Consensus       105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~  155 (536)
T KOG4648|consen  105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCE  155 (536)
T ss_pred             hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHH
Confidence            34455555555555555544332 1144455555555555555554444333

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=86.64  E-value=3.2  Score=30.98  Aligned_cols=22  Identities=18%  Similarity=0.042  Sum_probs=10.6

Q ss_pred             hHHHHHHHHHHHhcCCCCCchhH
Q 018582            2 TEKAEALLEKMKELNLGFSSMPF   24 (353)
Q Consensus         2 ~~~A~~~~~~m~~~~~~~~~~~~   24 (353)
                      ++.|++-.+.-...++ .|...+
T Consensus         7 FE~ark~aea~y~~nP-~DadnL   28 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNP-LDADNL   28 (186)
T ss_dssp             HHHHHHHHHHHHHH-T-T-HHHH
T ss_pred             HHHHHHHHHHHHHhCc-HhHHHH
Confidence            4556666666555443 444443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=86.47  E-value=2.8  Score=20.96  Aligned_cols=27  Identities=26%  Similarity=0.423  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 018582           94 TFSNLASIYVEAGLFEKAERALKELEN  120 (353)
Q Consensus        94 ~~~~l~~~~~~~~~~~~a~~~~~~~~~  120 (353)
                      +|..+...|...|++++|.+.|++..+
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~   29 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            344455555555555555555555443

...

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=86.45  E-value=2.2  Score=23.39  Aligned_cols=22  Identities=41%  Similarity=0.549  Sum_probs=10.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHH
Q 018582           98 LASIYVEAGLFEKAERALKELE  119 (353)
Q Consensus        98 l~~~~~~~~~~~~a~~~~~~~~  119 (353)
                      |..+|...|+.+.|.++++++.
T Consensus         5 LA~ayie~Gd~e~Ar~lL~evl   26 (44)
T TIGR03504         5 LARAYIEMGDLEGARELLEEVI   26 (44)
T ss_pred             HHHHHHHcCChHHHHHHHHHHH
Confidence            3444555555555555555444

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=86.07  E-value=11  Score=27.29  Aligned_cols=72  Identities=15%  Similarity=0.001  Sum_probs=42.5

Q ss_pred             ccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCC
Q 018582          244 RNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR  323 (353)
Q Consensus       244 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  323 (353)
                      ..++.+++..++..|.-....     .+...++..  ..+...|+|++|.++|+.+.+.+. -.+..-..+..++.-.|+
T Consensus        22 ~~~d~~D~e~lLdALrvLrP~-----~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~~~-~~p~~kAL~A~CL~al~D   93 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVLRPN-----LKELDMFDG--WLLIARGNYDEAARILRELLSSAG-APPYGKALLALCLNAKGD   93 (153)
T ss_pred             hcCCHHHHHHHHHHHHHhCCC-----ccccchhHH--HHHHHcCCHHHHHHHHHhhhccCC-CchHHHHHHHHHHHhcCC
Confidence            467888888888888776511     123333333  346678888888888888777654 223333333334444444

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.66  E-value=24  Score=31.99  Aligned_cols=130  Identities=18%  Similarity=0.267  Sum_probs=66.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 018582           95 FSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVN  174 (353)
Q Consensus        95 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  174 (353)
                      .+.++..+-+.|-.++|+++-         +|....   .....+.|+.+.|.++..+.      .+..-|..|.++..+
T Consensus       617 rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~  678 (794)
T KOG0276|consen  617 RTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAALS  678 (794)
T ss_pred             hhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHhh
Confidence            345566666666666665542         222111   12234556666666655443      244556666666666


Q ss_pred             cCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHH
Q 018582          175 LKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDC  254 (353)
Q Consensus       175 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~  254 (353)
                      .+++..|.+.|.....         |..|+-.+...|+-+....+-....+.|.. |. .    .-+|...|+++++.++
T Consensus       679 ~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N~-A----F~~~~l~g~~~~C~~l  743 (794)
T KOG0276|consen  679 AGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-NL-A----FLAYFLSGDYEECLEL  743 (794)
T ss_pred             cccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-ch-H----HHHHHHcCCHHHHHHH
Confidence            6676666666655432         233444555555555444444444444422 22 1    1234445666666655


Q ss_pred             HHH
Q 018582          255 LEK  257 (353)
Q Consensus       255 ~~~  257 (353)
                      +..
T Consensus       744 Li~  746 (794)
T KOG0276|consen  744 LIS  746 (794)
T ss_pred             HHh
Confidence            544

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=85.22  E-value=2.8  Score=22.99  Aligned_cols=25  Identities=32%  Similarity=0.606  Sum_probs=16.6

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHcC
Q 018582           62 WMRALAAVNDISGAERVIEEMKRDG   86 (353)
Q Consensus        62 ll~~~~~~~~~~~a~~~~~~~~~~~   86 (353)
                      +..+|...|+.+.|..+++++...|
T Consensus         5 LA~ayie~Gd~e~Ar~lL~evl~~~   29 (44)
T TIGR03504         5 LARAYIEMGDLEGARELLEEVIEEG   29 (44)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHcC
Confidence            4566667777777777777766544

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=85.11  E-value=31  Score=31.68  Aligned_cols=179  Identities=11%  Similarity=-0.047  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHhcCCCCCchhHHHHHHH---HHhcCCcchHHHHHHHHHH-------CCCCCCcchHHHHHHHHHhcC--
Q 018582            3 EKAEALLEKMKELNLGFSSMPFNSLMTL---YAKTGHPEKIPAIIQEMKA-------SSIMPDSYTYNVWMRALAAVN--   70 (353)
Q Consensus         3 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~m~~-------~~~~p~~~~~~~ll~~~~~~~--   70 (353)
                      ..|.+.++...+.|. ......-.++..   +....+.+.|+..|..+.+       .|   ......-+..+|.+..  
T Consensus       229 ~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~  304 (552)
T KOG1550|consen  229 SEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV  304 (552)
T ss_pred             hHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence            356666666666652 111111111111   3345677777777777765       34   3334555555665543  


Q ss_pred             ---ChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHH--ccCC
Q 018582           71 ---DISGAERVIEEMKRDGRVAADWTTFSNLASIYVE---AGLFEKAERALKELENRNAHRDLSAYQFLITLYG--QTGN  142 (353)
Q Consensus        71 ---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~  142 (353)
                         +.+.|..++......|  .|+....  +..++..   ..+...|.++|......|.. +..-+..++....  -..+
T Consensus       305 ~~~d~~~A~~~~~~aA~~g--~~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~  379 (552)
T KOG1550|consen  305 EKIDYEKALKLYTKAAELG--NPDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERN  379 (552)
T ss_pred             ccccHHHHHHHHHHHHhcC--CchHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCC
Confidence               4556777777777765  3444432  2222222   23466777777777666543 2222222211111  2346


Q ss_pred             HHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 018582          143 LSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGC  192 (353)
Q Consensus       143 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  192 (353)
                      ...|..++.+..+.|. |...--...+..+.. +.++.+.-.+..+...+
T Consensus       380 ~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g  427 (552)
T KOG1550|consen  380 LELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELG  427 (552)
T ss_pred             HHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence            6777777777766663 221111222223333 56666655555555544

>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]

Probab=84.72  E-value=7.5  Score=27.05  Aligned_cols=59  Identities=22%  Similarity=0.306  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHH
Q 018582          251 AVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIR  316 (353)
Q Consensus       251 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  316 (353)
                      ..+-+..+...+      +.|++.+...-+++|.+-+|+..|.++|+-++..-. +....|-.+++
T Consensus        68 vrkglN~l~~yD------lVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g-~~k~~Y~y~v~  126 (149)
T KOG4077|consen   68 VRKGLNNLFDYD------LVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCG-AQKQVYPYYVK  126 (149)
T ss_pred             HHHHHHhhhccc------cCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc-cHHHHHHHHHH
Confidence            445556666666      569999999999999999999999999998876544 44444555543

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=84.43  E-value=2  Score=20.26  Aligned_cols=17  Identities=29%  Similarity=0.327  Sum_probs=7.0

Q ss_pred             HHHHHhcCChHHHHHHH
Q 018582          204 IGAYAKEGRLENAEELK  220 (353)
Q Consensus       204 i~~~~~~g~~~~a~~~~  220 (353)
                      ...+...|++++|..++
T Consensus         8 a~~~~~~G~~~eA~~~l   24 (26)
T PF07721_consen    8 ARALLAQGDPDEAERLL   24 (26)
T ss_pred             HHHHHHcCCHHHHHHHH
Confidence            33344444444444433

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF13762 MNE1: Mitochondrial splicing apparatus component

Probab=84.18  E-value=13  Score=26.75  Aligned_cols=81  Identities=16%  Similarity=0.117  Sum_probs=41.8

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHcCC----CCCcHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHccCCCCHHHHHHHH
Q 018582           60 NVWMRALAAVNDISGAERVIEEMKRDGR----VAADWTTFSNLASIYVEAGL-FEKAERALKELENRNAHRDLSAYQFLI  134 (353)
Q Consensus        60 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~  134 (353)
                      +.++.-....+++.....+++.+.....    -..+...|..++.+..+..- ---+..+|.-+.+.+.++++.-|..+|
T Consensus        43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li  122 (145)
T PF13762_consen   43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI  122 (145)
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            4444444444555555554444432110    12344556666666655444 334555666666555666666666666


Q ss_pred             HHHHcc
Q 018582          135 TLYGQT  140 (353)
Q Consensus       135 ~~~~~~  140 (353)
                      .++.+.
T Consensus       123 ~~~l~g  128 (145)
T PF13762_consen  123 KAALRG  128 (145)
T ss_pred             HHHHcC
Confidence            666554

>PHA02875 ankyrin repeat protein; Provisional

Probab=84.16  E-value=22  Score=31.10  Aligned_cols=69  Identities=13%  Similarity=0.149  Sum_probs=34.0

Q ss_pred             HHHHHHHhcCCCCCchh--HHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcc--hHHHHHHHHHhcCChhHHHHHH
Q 018582            7 ALLEKMKELNLGFSSMP--FNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSY--TYNVWMRALAAVNDISGAERVI   79 (353)
Q Consensus         7 ~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~   79 (353)
                      ++++.+.+.|..|+...  ..+.+...+..|+.+    +.+.+.+.|..|+..  .....+...+..|+.+.+..++
T Consensus        16 ~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll   88 (413)
T PHA02875         16 DIARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELL   88 (413)
T ss_pred             HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHH
Confidence            45566666676555432  233344445555543    344445556555432  1223344555667766554444

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=83.69  E-value=42  Score=32.09  Aligned_cols=89  Identities=19%  Similarity=0.113  Sum_probs=56.8

Q ss_pred             HHccCCHHHHHHHHHHHHHhCCCCChh-------HHHHHH-HHHHhcCChhHHHHHHHHHHhc----CCCCcHHHHHHHH
Q 018582          137 YGQTGNLSEVYRIWRSLRLAFPNTANI-------SYLNMI-QVLVNLKDLPGAEKCFKEWESG----CATYDIRVTNVMI  204 (353)
Q Consensus       137 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li  204 (353)
                      .....++.+|..++.++...-..|+..       .+..+- ......|+++++.++-+.....    -..+....+..+.
T Consensus       425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~  504 (894)
T COG2909         425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG  504 (894)
T ss_pred             HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence            345678888888888876553333222       232222 1234567888888877776542    2334566677777


Q ss_pred             HHHHhcCChHHHHHHHHHHHh
Q 018582          205 GAYAKEGRLENAEELKERARR  225 (353)
Q Consensus       205 ~~~~~~g~~~~a~~~~~~~~~  225 (353)
                      .+..-.|++++|..+..+..+
T Consensus       505 ~a~~~~G~~~~Al~~~~~a~~  525 (894)
T COG2909         505 EAAHIRGELTQALALMQQAEQ  525 (894)
T ss_pred             HHHHHhchHHHHHHHHHHHHH
Confidence            888888999998888776654

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=82.85  E-value=24  Score=28.72  Aligned_cols=54  Identities=13%  Similarity=0.096  Sum_probs=30.5

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHH-------HHHHHHHHhcCChHHHHHHHH
Q 018582          168 MIQVLVNLKDLPGAEKCFKEWESGCATYDIRVT-------NVMIGAYAKEGRLENAEELKE  221 (353)
Q Consensus       168 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~li~~~~~~g~~~~a~~~~~  221 (353)
                      +.+-..+.+++++|...+.++...|...+..+.       ..+...|...|++....+...
T Consensus         9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~   69 (421)
T COG5159           9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTIT   69 (421)
T ss_pred             HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence            445556666777777777777766655544332       334555555555555444433

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=82.71  E-value=18  Score=27.17  Aligned_cols=76  Identities=14%  Similarity=0.097  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHccCCCCHHHHHHHHHHHHccC----C-------HHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 018582          109 EKAERALKELENRNAHRDLSAYQFLITLYGQTG----N-------LSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKD  177 (353)
Q Consensus       109 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  177 (353)
                      ++|..-|++.....+. ...++..+..+|...+    +       +++|.+.|++..+  ..|+...|..-+....    
T Consensus        52 edAisK~eeAL~I~P~-~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~----  124 (186)
T PF06552_consen   52 EDAISKFEEALKINPN-KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA----  124 (186)
T ss_dssp             HHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH----
Confidence            3344444444443332 2345555555554432    2       3444444444444  3467777777766553    


Q ss_pred             hhHHHHHHHHHHhcCC
Q 018582          178 LPGAEKCFKEWESGCA  193 (353)
Q Consensus       178 ~~~a~~~~~~~~~~~~  193 (353)
                        +|-++..++.+.+.
T Consensus       125 --kap~lh~e~~~~~~  138 (186)
T PF06552_consen  125 --KAPELHMEIHKQGL  138 (186)
T ss_dssp             --THHHHHHHHHHSSS
T ss_pred             --hhHHHHHHHHHHHh
Confidence              45666666665543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]

Probab=82.13  E-value=34  Score=29.89  Aligned_cols=63  Identities=16%  Similarity=0.222  Sum_probs=41.4

Q ss_pred             HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 018582          235 WEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD  304 (353)
Q Consensus       235 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  304 (353)
                      ...|+.-|...|+..+|..+++++   |++    +--....+.+++.+.-+.|+-...+.+++..-..|.
T Consensus       512 I~~LLeEY~~~GdisEA~~CikeL---gmP----fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl  574 (645)
T KOG0403|consen  512 IDMLLEEYELSGDISEACHCIKEL---GMP----FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL  574 (645)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHh---CCC----cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
Confidence            456777777888888888777664   433    223455677777777777776666666666555554

>PHA02875 ankyrin repeat protein; Provisional

Probab=81.68  E-value=35  Score=29.80  Aligned_cols=77  Identities=14%  Similarity=0.075  Sum_probs=38.5

Q ss_pred             HHhcCCcchHHHHHHHHHHCCCCCCcch--HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHH--HHHHHHHHHHhcC
Q 018582           31 YAKTGHPEKIPAIIQEMKASSIMPDSYT--YNVWMRALAAVNDISGAERVIEEMKRDGRVAADWT--TFSNLASIYVEAG  106 (353)
Q Consensus        31 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~  106 (353)
                      .++.|+.+-    ++.+.+.|..|+...  -.+.+..++..|+.+-+    +.+.+.| ..|+..  .....+...+..|
T Consensus         9 A~~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~g-a~~~~~~~~~~t~L~~A~~~g   79 (413)
T PHA02875          9 AILFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHG-AIPDVKYPDIESELHDAVEEG   79 (413)
T ss_pred             HHHhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCC-CCccccCCCcccHHHHHHHCC
Confidence            344565543    444455676665532  23445555667776543    3344445 333322  1123455555667


Q ss_pred             CHHHHHHHHH
Q 018582          107 LFEKAERALK  116 (353)
Q Consensus       107 ~~~~a~~~~~  116 (353)
                      +.+.+..+++
T Consensus        80 ~~~~v~~Ll~   89 (413)
T PHA02875         80 DVKAVEELLD   89 (413)
T ss_pred             CHHHHHHHHH
Confidence            7766555554

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=80.97  E-value=40  Score=29.92  Aligned_cols=118  Identities=11%  Similarity=-0.043  Sum_probs=75.5

Q ss_pred             HHHHhcCChHHHHHHHHHHH---hcCCCCC-----hhhHHHHHHHHHccCChHHHHHHHHHHHH-------cCCCCCCCC
Q 018582          205 GAYAKEGRLENAEELKERAR---RRGADPN-----AKTWEIFSDYYLRNGDMKLAVDCLEKAID-------TGRGDGGKW  269 (353)
Q Consensus       205 ~~~~~~g~~~~a~~~~~~~~---~~~~~p~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~  269 (353)
                      +.+.-.|++.+|.+++...-   ..|...+     -..||.|...+.+.|.+..+..+|.+.++       .|.+|...+
T Consensus       248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~  327 (696)
T KOG2471|consen  248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF  327 (696)
T ss_pred             HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence            34556789999998886643   1221111     12345665566677777777777777664       353332211


Q ss_pred             cc----cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCC
Q 018582          270 VP----SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR  323 (353)
Q Consensus       270 ~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  323 (353)
                      ..    ...+.....-.|...|++-.|.+-|.+....-. .++..|-.|..+|.-..+
T Consensus       328 tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh-~nPrlWLRlAEcCima~~  384 (696)
T KOG2471|consen  328 TLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH-RNPRLWLRLAECCIMALQ  384 (696)
T ss_pred             ehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHhh
Confidence            11    122333344567889999999999998887666 899999999999976543

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=80.18  E-value=31  Score=28.17  Aligned_cols=54  Identities=22%  Similarity=0.215  Sum_probs=32.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHccCCCCHHH-------HHHHHHHHHccCCHHHHHHHHH
Q 018582           98 LASIYVEAGLFEKAERALKELENRNAHRDLSA-------YQFLITLYGQTGNLSEVYRIWR  151 (353)
Q Consensus        98 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~a~~~~~  151 (353)
                      +.+-..+.+++++|+..+.++...|...|..+       ...+...|...|++...-+...
T Consensus         9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~   69 (421)
T COG5159           9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTIT   69 (421)
T ss_pred             HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence            45556667777777777777777776655433       3344555666666555444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	353
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	3e-08
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	2e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	7e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-05
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	1e-05
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	3e-05
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	3e-05
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	6e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	9e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	7e-04
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	9e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-04
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	2e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	4e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	5e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	5e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	7e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.2 bits (132), Expect = 2e-08
 Identities = 43/334 (12%), Positives = 86/334 (25%), Gaps = 92/334 (27%)

Query: 62  WMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENR 121
           W+ AL          +V  +M  D ++   W    N              E  L+ L+  
Sbjct: 165 WV-ALDVCLS----YKVQCKM--DFKIF--WLNLKNC----------NSPETVLEMLQKL 205

Query: 122 NAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGA 181
               D +              +  +       RL          L    VL+N+++    
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQA--ELRRLLKSKPYENCLL----VLLNVQN---- 255

Query: 182 EKCFKEWESGC----ATYDIRVTNVMIGAYAKEGRLEN---------------------A 216
            K +  +   C     T   +VT+ +  A      L++                      
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315

Query: 217 EELKERARRR--------GA--DPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDG 266
           ++L                        TW    D +      KL    +E +++      
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATW----DNWKHVNCDKLT-TIIESSLN------ 364

Query: 267 GKWVPSSETIRTFMRHFEQ----EKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAG 322
              V      R   + F++              L ++   V    V V    +  Y+   
Sbjct: 365 ---VLEPAEYR---KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418

Query: 323 RTS-------PVMLRRLKMEKVEVSEASKKLLEA 349
           +         P +   LK++        + +++ 
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 47/325 (14%), Positives = 100/325 (30%), Gaps = 100/325 (30%)

Query: 2   TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNV 61
            ++ ++LL K   L+     +P          T +P ++ +II E         ++    
Sbjct: 300 PDEVKSLLLKY--LDCRPQDLP------REVLTTNPRRL-SIIAESI--RDGLATWDN-- 346

Query: 62  WMR----ALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLA-------------SIYVE 104
           W       L  + + S       E ++          F  L+             S+   
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRK---------MFDRLSVFPPSAHIPTILLSLIWF 397

Query: 105 AGLFEKAERALKELENRN-AHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANI 163
             +       + +L   +   +     +  I++            I+  L++      N 
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQ--PKESTISIPS----------IYLELKV---KLENE 442

Query: 164 SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERA 223
             L+  + +V+  ++P   K F   +      D    +  IG +     L+N E      
Sbjct: 443 YALH--RSIVDHYNIP---KTFDSDDLIPPYLDQYFYS-HIG-H----HLKNIE------ 485

Query: 224 RRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSS------ETIR 277
                  + +   +F   +L   D +     LE+ I   R D   W  S       + ++
Sbjct: 486 -------HPERMTLFRMVFL---DFRF----LEQKI---RHDSTAWNASGSILNTLQQLK 528

Query: 278 TFMRHF-----EQEKDVDGAEGFLE 297
            +  +      + E+ V+    FL 
Sbjct: 529 FYKPYICDNDPKYERLVNAILDFLP 553

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 54.8 bits (130), Expect = 3e-08
 Identities = 22/154 (14%), Positives = 52/154 (33%), Gaps = 5/154 (3%)

Query: 1   MTEKAEALLEKMKEL---NLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSY 57
               A  LL             +   +N++M  +A+ G  +++  ++  +K + + PD  
Sbjct: 142 QLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLL 201

Query: 58  TYNVWMRALAAVNDISGA-ERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALK 116
           +Y   ++ +   +  +G  ER +E+M ++G       T   L S    A + +   +   
Sbjct: 202 SYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLL-SEEDRATVLKAVHKVKP 260

Query: 117 ELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIW 150
                           L+             ++ 
Sbjct: 261 TFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLH 294

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 45.6 bits (106), Expect = 2e-05
 Identities = 18/138 (13%), Positives = 37/138 (26%), Gaps = 4/138 (2%)

Query: 130 YQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEK---CFK 186
              L+       +L            A  +      L   +  +    LP A        
Sbjct: 95  LARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHH 154

Query: 187 EWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNG 246
                     + + N ++  +A++G  +    +    +  G  P+  ++        R  
Sbjct: 155 GQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQD 214

Query: 247 -DMKLAVDCLEKAIDTGR 263
            D      CLE+    G 
Sbjct: 215 QDAGTIERCLEQMSQEGL 232

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 26/224 (11%), Positives = 60/224 (26%), Gaps = 15/224 (6%)

Query: 42  AIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEE-MKRDGRVAADWTTFSNLAS 100
           A    M+   I  ++    +  +    +++   A+   +E +  D +    +    +   
Sbjct: 186 ANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHL 245

Query: 101 IYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNT 160
           +  +       +         +A    S Y   +        L        S+      +
Sbjct: 246 LTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSING-LEKS 304

Query: 161 ANISYLNMIQVLVNLKDLPGAEKCFKEWESGCAT----YDIRVTNVMIGAYAKEGRLENA 216
           +++  L     L              +           Y++ V  + + +  + G     
Sbjct: 305 SDL-LLCKADTLFVRSRFIDVLAITTK-----ILEIDPYNLDVYPLHLASLHESGEKNKL 358

Query: 217 EELKERARRRGADPN-AKTWEIFSDYYLRNGDMKLAVDCLEKAI 259
             +      R   P  A TW     YYL    +  A     K+ 
Sbjct: 359 YLISNDLVDR--HPEKAVTWLAVGIYYLCVNKISEARRYFSKSS 400

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 43.7 bits (103), Expect = 7e-05
 Identities = 44/275 (16%), Positives = 77/275 (28%), Gaps = 35/275 (12%)

Query: 3   EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSY-TYNV 61
               A+  K+ E++  ++   +   +    ++G   K    +         P+   T+  
Sbjct: 322 IDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNK--LYLISNDLVDRHPEKAVTWLA 378

Query: 62  WMRALAAVNDISGAERVIE---EMKRDGRVAADWTTFSNLASIYVEAGLFEKA----ERA 114
                  VN IS A R       M         W      A  +   G  ++A      A
Sbjct: 379 VGIYYLCVNKISEARRYFSKSSTMDPQ--FGPAWI---GFAHSFAIEGEHDQAISAYTTA 433

Query: 115 LKELENRNAHRDLSAYQFLITLYGQTGNLSE---VYRIWRSLRLAFPNTANISYLNMIQV 171
              L           Y FL   + Q GN+       +   S  L       +    +  V
Sbjct: 434 A-RLFQGTHL----PYLFLGMQHMQLGNILLANEYLQ--SSYALF-QYDPLL-LNELGVV 484

Query: 172 LVNLKDLPGAEKCFKE-WESGCATYDIRVTNVMI-----GAYAKEGRLENAEELKERARR 225
             N  D+  A   F+        T                AY K    + A +   +   
Sbjct: 485 AFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL 544

Query: 226 RGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAID 260
              + +A      +  YL      LA+  L +++ 
Sbjct: 545 LSTN-DANVHTAIALVYLHKKIPGLAITHLHESLA 578

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 27/181 (14%), Positives = 55/181 (30%), Gaps = 23/181 (12%)

Query: 97  NLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSE---VYRIWRSL 153
                 ++ G    A    +    ++    + A+Q+L T   +           R  R L
Sbjct: 69  EEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALR--RCL 125

Query: 154 RLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEW--------------ESGCATYDIRV 199
            L  P+    + + +     N      A +  ++W              E G     +  
Sbjct: 126 ELK-PDNQT-ALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGP 183

Query: 200 TNVMIGAYAKEGRLENAEELKERARRRGAD-PNAKTWEIFSDYYLRNGDMKLAVDCLEKA 258
           +  ++G+   +      +EL   A R      +          +  +G+   AVDC   A
Sbjct: 184 SKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAA 243

Query: 259 I 259
           +
Sbjct: 244 L 244

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 19/185 (10%), Positives = 52/185 (28%), Gaps = 20/185 (10%)

Query: 93  TTFSNLASIYVEAGLFEKA----ERALKELENRNAHRDL-SAYQFLITLYGQTGN----- 142
            +   +A  Y +   ++KA    E AL+   +    R +  +   +   Y ++G+     
Sbjct: 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV 242

Query: 143 --LSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKE----WESGCATYD 196
               +  ++ R      P+        +   L        A +  +E      +    + 
Sbjct: 243 EHFQKAAKVSREK---VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFY 299

Query: 197 IRVTNVMIGAYAKEGRLENAEELKERARRRGADPN-AKTWEIFSDYYLRNGDMKLAVDCL 255
             +   +   Y +        +L     ++             +  +  +   + A    
Sbjct: 300 KELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFY 359

Query: 256 EKAID 260
            K + 
Sbjct: 360 RKVLK 364

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 44.3 bits (104), Expect = 3e-05
 Identities = 27/162 (16%), Positives = 55/162 (33%), Gaps = 9/162 (5%)

Query: 10  EKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNV---WMRAL 66
             ++ L+ G S       + +  K    +   A  +  K      D+    +   W+   
Sbjct: 119 AALRTLHQGDSLECMAMTVQILLKLDRLDL--ARKELKKMQDQDEDATLTQLATAWVSLA 176

Query: 67  AAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRD 126
           A    +  A  + +EM    + +      +  A+ ++  G +E AE  L+E  ++++   
Sbjct: 177 AGGEKLQDAYYIFQEMAD--KCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS-GH 233

Query: 127 LSAYQFLITLYGQTGNLSE-VYRIWRSLRLAFPNTANISYLN 167
                 L+ L    G   E   R    L+ A  +   I    
Sbjct: 234 PETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYR 275

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 44.3 bits (104), Expect = 3e-05
 Identities = 32/219 (14%), Positives = 67/219 (30%), Gaps = 10/219 (4%)

Query: 42  AIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASI 101
            ++ E+K SS  P+     ++   LA+ +        ++          + T     ASI
Sbjct: 52  VVLDEIKPSS-APELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASI 110

Query: 102 YVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRS-LRLAFPNT 160
           Y      + A R L +         L      + +  +   L    +  +         T
Sbjct: 111 YFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDAT 164

Query: 161 ANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELK 220
                   + +    + L  A   F+E    C+   + + N     +  +GR E AE + 
Sbjct: 165 LTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP-TLLLLNGQAACHMAQGRWEAAEGVL 223

Query: 221 ERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAI 259
           + A  + +  + +T           G      +     +
Sbjct: 224 QEALDKDSG-HPETLINLVVLSQHLGKPPEVTNRYLSQL 261

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 43.3 bits (102), Expect = 6e-05
 Identities = 24/192 (12%), Positives = 55/192 (28%), Gaps = 23/192 (11%)

Query: 89  AADWTTFSNLASIYVEAGLFEKA----ERALKELENRNAHRDL-SAYQFLITLYGQTGNL 143
           AA    ++  A  +  A   E+A     +  +   N  +      A++    +      +
Sbjct: 35  AAS--EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRM 92

Query: 144 SEVYRIWRSLRLAF-----PNTANISYLNMIQVLVNLKDLPGAEKCFKE-----WESGCA 193
            E  +      + +     P+TA    L+    L+   DL  A   +++           
Sbjct: 93  PEAVQYIEKASVMYVENGTPDTA-AMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERL 151

Query: 194 TYDIRVTNVMIGAYAKEGRLENAEELKERA----RRRGADPN-AKTWEIFSDYYLRNGDM 248
                +         ++ + + A    ++     +     P   K         L   D 
Sbjct: 152 RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADY 211

Query: 249 KLAVDCLEKAID 260
             A  C+ ++  
Sbjct: 212 VAAQKCVRESYS 223

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 43.3 bits (103), Expect = 8e-05
 Identities = 34/172 (19%), Positives = 59/172 (34%), Gaps = 20/172 (11%)

Query: 97  NLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSE---VYRIWRSL 153
            LA    +AG FE AER   +L  +    +      L +++ Q   L           ++
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFST--LAI 60

Query: 154 RLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCAT----YDIRVTNVMIGAYAK 209
           +   P  A  +Y N+  V      L  A + ++      A       I     +  A   
Sbjct: 61  KQN-PLLAE-AYSNLGNVYKERGQLQEAIEHYRH-----ALRLKPDFIDGYINLAAALVA 113

Query: 210 EGRLENAEELKERARRRGADPN-AKTWEIFSDYYLRNGDMKLAVDCLEKAID 260
            G +E A +    A +   +P+         +     G ++ A  C  KAI+
Sbjct: 114 AGDMEGAVQAYVSALQ--YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 43.0 bits (101), Expect = 9e-05
 Identities = 40/314 (12%), Positives = 84/314 (26%), Gaps = 60/314 (19%)

Query: 3   EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPD-SYTYNV 61
           E+A+   EK  E             +  Y     P    AI    +A  + PD  Y   +
Sbjct: 155 ERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVL 214

Query: 62  WMRALAAVNDISG----AERVIE---EMKRDGRVAADWTTFSNLASIYVEAGLFEKAERA 114
               L  + +        E+++E   E               + A  Y      +KA   
Sbjct: 215 LALKLHKMREEGEEEGEGEKLVEEALEKAPG-----VTDVLRSAAKFYRRKDEPDKAIEL 269

Query: 115 LKEL-----ENRNAHRDL------SAYQFLITLYGQTGNLSEVYRIWRSLRLAF------ 157
           LK+       N   H  +        +Q +           ++  +              
Sbjct: 270 LKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA 329

Query: 158 -PNTANISYLNMIQVLVNLKDLPGAEKCFK---EWESGCAT-------------YDIRVT 200
             N        +  +         AE  F+     E                  Y ++  
Sbjct: 330 NDNLFR-VCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCE 388

Query: 201 NVMIGAY-----------AKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMK 249
           +  I  +            KE   +  +++ +    +    +++   + +     N  M+
Sbjct: 389 DKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGA-DSEALHVLAFLQELNEKMQ 447

Query: 250 LAVDCLEKAIDTGR 263
            A +  E+ +++G 
Sbjct: 448 QADEDSERGLESGS 461

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 40.3 bits (94), Expect = 7e-04
 Identities = 27/203 (13%), Positives = 60/203 (29%), Gaps = 23/203 (11%)

Query: 75  AERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELEN---------RNAHR 125
           AE +I++   D        T+ N A +Y   G     +  + ++++         R    
Sbjct: 77  AEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESP 136

Query: 126 DLSAYQFLITLYGQTGNLSE---VYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAE 182
           +L   +    L             +   ++L    P         +      L + P ++
Sbjct: 137 ELDCEEGWTRLKCGGNQNERAKVCFE--KALEKK-PKNPE-FTSGLAIASYRLDNWPPSQ 192

Query: 183 KCFKEWESGCATY--DIRVTNVMIGAYAK----EGRLENAEELKERARRRGADPNAKTWE 236
                          +  +  ++     K           E+L E A  +          
Sbjct: 193 NAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLR 251

Query: 237 IFSDYYLRNGDMKLAVDCLEKAI 259
             + +Y R  +   A++ L+KA+
Sbjct: 252 SAAKFYRRKDEPDKAIELLKKAL 274

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 43.0 bits (101), Expect = 9e-05
 Identities = 34/251 (13%), Positives = 72/251 (28%), Gaps = 27/251 (10%)

Query: 98  LASIYVEAGLFEKA----ERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWR-- 151
            A + +  G  ++A    + AL+EL     +  + A   L  +    G L+    + +  
Sbjct: 20  RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQT 79

Query: 152 ---SLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCF-------KEWESGCATYDIRVTN 201
              + +    + A  S +   ++L     L  A +          E           +  
Sbjct: 80  EQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVR 139

Query: 202 VMIGAYAKEGRLENAEELKERA----RRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEK 257
           +         RL+ AE                   +   +     L  GD+  A   L +
Sbjct: 140 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNR 199

Query: 258 AIDTGR--GDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEP-- 313
             +          W+ ++  +R  + +++   D   A  +L    K        +     
Sbjct: 200 LENLLGNGKYHSDWISNANKVR--VIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257

Query: 314 -LIRTYAAAGR 323
            + R     G 
Sbjct: 258 NIARAQILLGE 268

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 30/267 (11%), Positives = 66/267 (24%), Gaps = 47/267 (17%)

Query: 3   EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVW 62
               +       L    + +        +    +     A +   ++ ++ P   +Y   
Sbjct: 226 HSLLSANTVDDPLRENAA-LALCYTGIFHFLKNNLLD--AQVLLQESINLHPTPNSYIFL 282

Query: 63  MRALAAVNDISGA----ERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALK-- 116
              LA   +        ++ ++ +  +        T+ +   +Y     ++ A+   +  
Sbjct: 283 ALTLADKENSQEFFKFFQKAVD-LNPE-----YPPTYYHRGQMYFILQDYKNAKEDFQKA 336

Query: 117 -ELENRNAHRDLSAYQFLITLYGQTGNLSE---VYRIWRSLRLAFPNTANISYLNMIQVL 172
             L   N       Y  L  L  + G  +E    +    +    FP    +      ++L
Sbjct: 337 QSLNPENV----YPYIQLACLLYKQGKFTESEAFFN--ETKLK-FPTLPEV-PTFFAEIL 388

Query: 173 VNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNA 232
            +  D   A K +                      AK       +         G     
Sbjct: 389 TDRGDFDTAIKQYDI--------------------AKRLEEVQEKIHVGIGPLIGKATIL 428

Query: 233 KTWEIFSDYYLRNGDMKLAVDCLEKAI 259
                     L       A+  L KA 
Sbjct: 429 ARQSSQDPTQLDEEKFNAAIKLLTKAC 455

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 28/181 (15%), Positives = 55/181 (30%), Gaps = 25/181 (13%)

Query: 95  FSNLASIYVEAGLFEKAERALK---ELENRNAHRDLSAYQFLITLYGQTGNLSE---VYR 148
           +      +      ++A  A     +L             ++   YG T N       + 
Sbjct: 128 WIAYGHSFAVESEHDQAMAAYFTAAQLMKGCH----LPMLYIGLEYGLTNNSKLAERFFS 183

Query: 149 IWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKE---------WESGCATYDIRV 199
             ++L +A P    +    +  V     +   AEK F +          E     ++  +
Sbjct: 184 --QALSIA-PEDPFV-MHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLL 239

Query: 200 TNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAI 259
            N +     K  +   A +   +A       NA T+      +   G+ + AVD    A+
Sbjct: 240 NN-LGHVCRKLKKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTAL 297

Query: 260 D 260
            
Sbjct: 298 G 298

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 40.3 bits (93), Expect = 2e-04
 Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 20/48 (41%)

Query: 3  EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKAS 50
          EK     + +K+L          SL  LYA     +  PA+   +KA+
Sbjct: 18 EK-----QALKKLQ--------ASL-KLYA----DDSAPAL--AIKAT 45

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 32/214 (14%), Positives = 67/214 (31%), Gaps = 25/214 (11%)

Query: 56  SYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERAL 115
           S+ ++     L       G +  ++  K           +  L   Y++ G  E+A+  L
Sbjct: 4   SHHHHHHSSGLVPRGSHMGDQNPLKTDKGRDEARD---AYIQLGLGYLQRGNTEQAKVPL 60

Query: 116 K---ELENRNAHRDLSAYQFLITLYGQTGNLSE---VYRIWRSLRLAFPNTANISYLNMI 169
           +   E++  +A     A+  L  ++            YR  ++L       A +   N  
Sbjct: 61  RKALEIDPSSA----DAHAALAVVFQTEMEPKLADEEYR--KALASD-SRNARV-LNNYG 112

Query: 170 QVLVNLKDLPGAEKCFKE--WESGCATYDIRVTNVMIG-AYAKEGRLENAEELKERARRR 226
             L   K    A +   E   ++          N  +G    +  +   A+E  E++ R 
Sbjct: 113 GFLYEQKRYEEAYQRLLEASQDTLYPERSRVFEN--LGLVSLQMKKPAQAKEYFEKSLR- 169

Query: 227 GADPN-AKTWEIFSDYYLRNGDMKLAVDCLEKAI 259
             + N        +D   +  +   A    +   
Sbjct: 170 -LNRNQPSVALEMADLLYKEREYVPARQYYDLFA 202

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 18/180 (10%), Positives = 39/180 (21%), Gaps = 23/180 (12%)

Query: 97  NLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSE---VYRIWRSL 153
                 ++     +A  A + +          A++ L     +               + 
Sbjct: 26  EEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALN--HAR 82

Query: 154 RLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEW--------------ESGCATYDIRV 199
            L  P      +  +     N  +   A    + W                     D   
Sbjct: 83  MLD-PKDIA-VHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLN 140

Query: 200 TNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAI 259
                  +A          L   A     + +A+        Y  + +   A   L +A+
Sbjct: 141 VQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAV 199

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 40.3 bits (95), Expect = 5e-04
 Identities = 30/273 (10%), Positives = 66/273 (24%), Gaps = 60/273 (21%)

Query: 3   EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEK-IPAIIQEMKASSIMPDSY-TYN 60
            +A  +  K++        + +N     Y +    +     I       +        + 
Sbjct: 20  AEAIEVFNKLEAKKYNSPYI-YNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFE 78

Query: 61  VWMRALAAVNDISGA----ERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKA----E 112
            + + L      S A    +  ++              +  + S +   G F  A    E
Sbjct: 79  YYGKILMKKGQDSLAIQQYQAAVD-RDTT-----RLDMYGQIGSYFYNKGNFPLAIQYME 132

Query: 113 RALKELENRNAHRDLSAYQFLITLYGQTGNLSE---VYRIWRSLRLAFPNTANISYLNMI 169
           + +      +       +  L   Y       +    +   + L L  PN     YL   
Sbjct: 133 KQI-RPTTTDPK----VFYELGQAYYYNKEYVKADSSFV--KVLEL-KPNIYI-GYLWRA 183

Query: 170 QVLVNLKDLP---GAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRR 226
           +             A+  +++                              E+      +
Sbjct: 184 RANAAQDPDTKQGLAKPYYEK----------------------------LIEVCAPGGAK 215

Query: 227 GADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAI 259
             D   +  E  + YY  N D   A    +  +
Sbjct: 216 YKDELIEANEYIAYYYTINRDKVKADAAWKNIL 248

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 28/185 (15%), Positives = 50/185 (27%), Gaps = 24/185 (12%)

Query: 91  DWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSE---VY 147
           DW          ++ G        ++    ++   D  A+QFL     +  N        
Sbjct: 64  DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVAL 122

Query: 148 RIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAY 207
           +  R L L  PN    + + +     N      A +  K W      Y   V N   G+ 
Sbjct: 123 Q--RCLELQ-PNNLK-ALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKN-KKGSP 177

Query: 208 AKEGRLENAEELKERARRRGADPN-AKTWEIFSDY------------YLRNGDMKLAVDC 254
               R+  +                 +      D             +  +G+   A+D 
Sbjct: 178 GLTRRMSKSPVDSSVLEG--VKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDA 235

Query: 255 LEKAI 259
              A+
Sbjct: 236 FNAAL 240

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	353
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.97
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.97
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.96
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.95
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.94
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.94
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.93
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.93
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.92
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.91
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.91
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.91
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.9
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.9
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.89
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.88
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.88
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.87
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.85
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.84
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.84
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.83
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.83
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.82
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.8
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.79
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.79
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.79
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.79
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.79
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.79
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.78
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.77
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.77
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.77
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.76
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.76
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.76
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.76
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.76
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.76
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.76
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.76
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.75
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.75
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.75
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.72
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.72
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.72
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.69
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.67
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.67
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.66
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.66
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.65
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.65
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.64
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.64
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.64
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.64
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.63
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.62
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.62
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.62
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.62
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.57
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.57
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.57
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.56
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.56
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.54
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.53
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.52
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.52
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.51
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.5
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.5
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.49
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.49
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.46
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.44
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.44
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.42
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.42
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.38
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.35
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.34
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.34
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.33
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.33
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.32
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.31
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.31
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.29
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.29
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.27
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.27
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.27
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.26
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.24
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.24
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.23
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.2
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.2
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.19
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.18
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.14
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.13
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.13
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.08
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.08
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.07
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.06
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.06
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.05
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.05
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.04
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.04
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.03
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.01
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.01
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.99
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.98
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.97
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.97
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.96
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.95
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.94
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.94
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.94
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.93
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.93
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.92
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.91
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.91
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.9
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.9
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.9
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.9
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.89
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.88
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.86
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.86
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.84
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.83
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.83
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.82
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.81
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.8
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.79
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.76
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.76
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.75
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.75
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.75
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.75
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.72
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.7
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.69
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.68
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.67
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.66
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.66
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.65
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.65
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.65
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.64
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.62
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.61
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.59
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.55
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.54
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.54
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.53
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.51
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.49
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.47
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.47
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.45
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.42
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.42
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.42
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.41
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.37
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.37
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.36
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.31
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.3
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.26
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.26
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.14
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.14
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.1
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.1
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.09
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.08
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.05
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.03
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.02
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.98
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.94
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.94
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.87
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.83
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.6
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.48
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.39
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.39
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.39
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.35
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.18
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.17
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.16
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.15
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.04
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.04
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.94
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.92
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	96.72
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.71
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.68
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.62
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.6
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	96.59
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.45
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.42
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.35
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.14
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.09
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	95.62
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	95.51
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	95.42
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	95.29
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	95.28
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.14
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.09
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	94.4
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.18
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	93.92
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	93.85
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	93.59
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	93.06
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	92.91
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	92.66
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	92.48
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	91.81
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	91.65
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	91.6
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	91.02
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	90.36
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	90.07
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	89.69
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	89.56
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	88.45
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	88.19
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	84.88
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	84.59
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	84.41
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	82.91
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	82.47
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	82.12
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	80.86

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=1.8e-35  Score=257.27  Aligned_cols=207  Identities=15%  Similarity=0.170  Sum_probs=175.7

Q ss_pred             HHHHHHHHHHHhcCCCCCch-hHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCC---------h
Q 018582            3 EKAEALLEKMKELNLGFSSM-PFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVND---------I   72 (353)
Q Consensus         3 ~~A~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---------~   72 (353)
                      ..+..++..+.++++.+++. .++.+|+.|++.|++++|+++|++|.+.|++||..||+++|.+|++.+.         +
T Consensus         7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l   86 (501)
T 4g26_A            7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL   86 (501)
T ss_dssp             -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred             chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence            45667778888877765543 5888999999999999999999999999999999999999999987665         5


Q ss_pred             hHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 018582           73 SGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRS  152 (353)
Q Consensus        73 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  152 (353)
                      +.|.++|++|.+.| +.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++
T Consensus        87 ~~A~~lf~~M~~~G-~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~  165 (501)
T 4g26_A           87 SRGFDIFKQMIVDK-VVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH  165 (501)
T ss_dssp             HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence            78999999999998 99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc
Q 018582          153 LRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKE  210 (353)
Q Consensus       153 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  210 (353)
                      |.+.|+.||..||+++|.+|++.|+.++|.+++++|.+.+..|+..||+.++..|+..
T Consensus       166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999988764

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=1.4e-34  Score=251.66  Aligned_cols=204  Identities=10%  Similarity=0.063  Sum_probs=115.6

Q ss_pred             HHHHHHHHHHCCCCCCcc-hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCC---------HH
Q 018582           40 IPAIIQEMKASSIMPDSY-TYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGL---------FE  109 (353)
Q Consensus        40 a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~  109 (353)
                      +..+.+++.+.+..+.+. .++.+|.+|++.|++++|.++|++|.+.| +.||..+||.||.+|++.+.         ++
T Consensus         9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~G-v~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~   87 (501)
T 4g26_A            9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNG-VQLSQYHYNVLLYVCSLAEAATESSPNPGLS   87 (501)
T ss_dssp             ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT-CCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred             HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence            334444555444443332 35556666666666666666666666666 66666666666666655443         45


Q ss_pred             HHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 018582          110 KAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWE  189 (353)
Q Consensus       110 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  189 (353)
                      .|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.
T Consensus        88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~  167 (501)
T 4g26_A           88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV  167 (501)
T ss_dssp             HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence            56666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             hcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHc
Q 018582          190 SGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLR  244 (353)
Q Consensus       190 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~  244 (353)
                      +.|+.||..+|++||.+|++.|+.++|.++|++|.+.|..|+..||+.++..|..
T Consensus       168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s  222 (501)
T 4g26_A          168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS  222 (501)
T ss_dssp             HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred             hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence            6666666666666666666666666666666666666666666666666555544

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5.6e-32  Score=243.84  Aligned_cols=284  Identities=10%  Similarity=-0.018  Sum_probs=242.8

Q ss_pred             CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHH
Q 018582           54 PDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFL  133 (353)
Q Consensus        54 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  133 (353)
                      ++..+|..++.++.+.|++++|..+|+++.+.+  +.+..++..++.++.+.|++++|..+++++....+ .+..+|+.+
T Consensus       303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l  379 (597)
T 2xpi_A          303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEID--PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP-EKAVTWLAV  379 (597)
T ss_dssp             GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc-ccHHHHHHH
Confidence            566778888888888899999999998888763  55777888888888899999999999988876543 478899999


Q ss_pred             HHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCh
Q 018582          134 ITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRL  213 (353)
Q Consensus       134 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  213 (353)
                      +..|.+.|++++|.++|+++.+..+ .+..+|..++.+|.+.|++++|.++|+++.+.++ .+..+|+.++.+|.+.|++
T Consensus       380 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~  457 (597)
T 2xpi_A          380 GIYYLCVNKISEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNI  457 (597)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCH
Confidence            9999999999999999999988754 4678999999999999999999999999998764 4889999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHc----CCCCCCCCccc--HHHHHHHHHHHHhcC
Q 018582          214 ENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDT----GRGDGGKWVPS--SETIRTFMRHFEQEK  287 (353)
Q Consensus       214 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~--~~~~~~l~~~~~~~~  287 (353)
                      ++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+.    +      ..|+  ..+|..++.+|.+.|
T Consensus       458 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~p~~~~~~~~~l~~~~~~~g  530 (597)
T 2xpi_A          458 LLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQ------SNEKPWAATWANLGHAYRKLK  530 (597)
T ss_dssp             HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC------CCSGGGHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccc------cchhhHHHHHHHHHHHHHHhc
Confidence            99999999999874 347889999999999999999999999999887    3      2366  789999999999999


Q ss_pred             ChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChHHHHHHHHhCCCccCHhHHHHHHHH
Q 018582          288 DVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLLEAI  350 (353)
Q Consensus       288 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~~~~l~~~  350 (353)
                      ++++|.+.++++.+.++ .+..+|..++.+|.+.|++.+++...-+...+.|+.......++-
T Consensus       531 ~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~  592 (597)
T 2xpi_A          531 MYDAAIDALNQGLLLST-NDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKR  592 (597)
T ss_dssp             CHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence            99999999999999988 899999999999999999766554333344457776665544443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.8e-31  Score=238.47  Aligned_cols=302  Identities=12%  Similarity=0.064  Sum_probs=275.4

Q ss_pred             hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 018582            2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEE   81 (353)
Q Consensus         2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~   81 (353)
                      +++|+++|+.+.+.  +++..+|+.++..|.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..++++
T Consensus       288 ~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  364 (597)
T 2xpi_A          288 LRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISND  364 (597)
T ss_dssp             HHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            57899999999876  4889999999999999999999999999999865 45788999999999999999999999999


Q ss_pred             HHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCC
Q 018582           82 MKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTA  161 (353)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  161 (353)
                      +.+.  .+.+..+++.++.+|.+.|++++|.++|+++.+..+. +..+|+.++..|.+.|++++|+++|+++.+.++ .+
T Consensus       365 ~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~  440 (597)
T 2xpi_A          365 LVDR--HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GT  440 (597)
T ss_dssp             HHHH--CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TC
T ss_pred             HHhh--CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cc
Confidence            9976  5778999999999999999999999999999876543 788999999999999999999999999988765 47


Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCCC--hhhH
Q 018582          162 NISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRR----GADPN--AKTW  235 (353)
Q Consensus       162 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~--~~~~  235 (353)
                      ..+|..++.+|.+.|++++|.++|+++.+..+. +..+|+.++..|.+.|++++|.++|+++.+.    +..|+  ..+|
T Consensus       441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~  519 (597)
T 2xpi_A          441 HLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATW  519 (597)
T ss_dssp             SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHH
Confidence            889999999999999999999999999987644 8899999999999999999999999999876    66787  7899


Q ss_pred             HHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHH
Q 018582          236 EIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLI  315 (353)
Q Consensus       236 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  315 (353)
                      ..++.+|.+.|++++|.++++++.+.+       ..+..+|..+..+|.+.|++++|.+.++++.+.+| .+...|..+.
T Consensus       520 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~  591 (597)
T 2xpi_A          520 ANLGHAYRKLKMYDAAIDALNQGLLLS-------TNDANVHTAIALVYLHKKIPGLAITHLHESLAISP-NEIMASDLLK  591 (597)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHS-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CChHHHHHHH
Confidence            999999999999999999999999986       14789999999999999999999999999999998 8888888888


Q ss_pred             HHHH
Q 018582          316 RTYA  319 (353)
Q Consensus       316 ~~~~  319 (353)
                      .+|.
T Consensus       592 ~~~~  595 (597)
T 2xpi_A          592 RALE  595 (597)
T ss_dssp             HTTC
T ss_pred             HHHh
Confidence            7764

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.97  E-value=1.1e-27  Score=204.41  Aligned_cols=326  Identities=13%  Similarity=0.113  Sum_probs=238.4

Q ss_pred             hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 018582            2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEE   81 (353)
Q Consensus         2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~   81 (353)
                      +++|...++...+... .+..+|..+...+.+.|++++|.+.|+++.+.. +.+..+|..+..++...|++++|...|++
T Consensus        49 ~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  126 (388)
T 1w3b_A           49 LDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVS  126 (388)
T ss_dssp             HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            4556666665555432 455667777777777777777777777776642 22334567777777777777777777777


Q ss_pred             HHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCC
Q 018582           82 MKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTA  161 (353)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  161 (353)
                      +.+.  .+.+...+..+...+...|++++|.+.|+++....+. +..+|..+...+...|++++|...|+++.+..+ .+
T Consensus       127 al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~  202 (388)
T 1w3b_A          127 ALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NF  202 (388)
T ss_dssp             HHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TC
T ss_pred             HHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-Cc
Confidence            7765  3444555666777777777777777777777665443 566777777778888888888888887777654 34


Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 018582          162 NISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDY  241 (353)
Q Consensus       162 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~  241 (353)
                      ...+..+...+...|++++|...+++.....+. +..++..+...|.+.|++++|...|+++.+.+. .+..+|..+...
T Consensus       203 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~  280 (388)
T 1w3b_A          203 LDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANA  280 (388)
T ss_dssp             HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence            567777777888888888888888887776533 677888888888888999999999988887642 256778888888


Q ss_pred             HHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHc
Q 018582          242 YLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAA  321 (353)
Q Consensus       242 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  321 (353)
                      +.+.|++++|.+.++++.+..       +.+..++..+...+.+.|++++|...++++.+..| .+..++..++.+|.+.
T Consensus       281 ~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~  352 (388)
T 1w3b_A          281 LKEKGSVAEAEDCYNTALRLC-------PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQ  352 (388)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHTT
T ss_pred             HHHcCCHHHHHHHHHHHHhhC-------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHc
Confidence            888899999999999888875       14677888888889999999999999998888877 7788889999999999


Q ss_pred             CCChHHHHHHHHhCCCccCHhH
Q 018582          322 GRTSPVMLRRLKMEKVEVSEAS  343 (353)
Q Consensus       322 g~~~~~~~~~m~~~~~~p~~~~  343 (353)
                      |++.+++-..-+...+.|+...
T Consensus       353 g~~~~A~~~~~~a~~~~p~~~~  374 (388)
T 1w3b_A          353 GKLQEALMHYKEAIRISPTFAD  374 (388)
T ss_dssp             TCCHHHHHHHHHHHTTCTTCHH
T ss_pred             CCHHHHHHHHHHHHhhCCCCHH
Confidence            9877665433334445676544

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.97  E-value=3.1e-27  Score=201.65  Aligned_cols=326  Identities=14%  Similarity=0.038  Sum_probs=283.7

Q ss_pred             ChHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 018582            1 MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIE   80 (353)
Q Consensus         1 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~   80 (353)
                      .+++|++.++.+.+..+ .+...+..+...+.+.|++++|...++...+.. +.+..+|..+..++.+.|++++|...|+
T Consensus        14 ~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~   91 (388)
T 1w3b_A           14 DFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYR   91 (388)
T ss_dssp             CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            46899999999987663 455677788888999999999999999988753 5577899999999999999999999999


Q ss_pred             HHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCC
Q 018582           81 EMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNT  160 (353)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  160 (353)
                      ++.+.  .+.+..++..+..++.+.|++++|.+.|+++....+. +...+..+...+...|++++|.+.|+++....+ .
T Consensus        92 ~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~  167 (388)
T 1w3b_A           92 HALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQP-N  167 (388)
T ss_dssp             HHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT-T
T ss_pred             HHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-C
Confidence            99986  4666778999999999999999999999999887654 567788899999999999999999999988765 3


Q ss_pred             ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 018582          161 ANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSD  240 (353)
Q Consensus       161 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~  240 (353)
                      +..+|..+...+...|++++|...|+++.+.++. +...+..+...+...|++++|...|++..+..+ .+..++..+..
T Consensus       168 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~  245 (388)
T 1w3b_A          168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLAC  245 (388)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCHHHHHHHHH
Confidence            5778999999999999999999999999987754 788899999999999999999999999987642 25788999999


Q ss_pred             HHHccCChHHHHHHHHHHHHcCCCCCCCCcc-cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHH
Q 018582          241 YYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYA  319 (353)
Q Consensus       241 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  319 (353)
                      .+...|++++|++.++++.+.+        | +..++..+..++.+.|++++|...++++.+..+ .+..+|..+...+.
T Consensus       246 ~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~  316 (388)
T 1w3b_A          246 VYYEQGLIDLAIDTYRRAIELQ--------PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADSLNNLANIKR  316 (388)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTC--------SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHH
Confidence            9999999999999999999986        4 477899999999999999999999999999988 89999999999999


Q ss_pred             HcCCChHHHHHHHHhCCCccCHhH
Q 018582          320 AAGRTSPVMLRRLKMEKVEVSEAS  343 (353)
Q Consensus       320 ~~g~~~~~~~~~m~~~~~~p~~~~  343 (353)
                      +.|+..+++-..-+.....|+...
T Consensus       317 ~~g~~~~A~~~~~~al~~~p~~~~  340 (388)
T 1w3b_A          317 EQGNIEEAVRLYRKALEVFPEFAA  340 (388)
T ss_dssp             TTTCHHHHHHHHHHHTTSCTTCHH
T ss_pred             HcCCHHHHHHHHHHHHhcCCCcHH
Confidence            999976665433344445676543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.96  E-value=7.4e-26  Score=196.88  Aligned_cols=327  Identities=9%  Similarity=0.004  Sum_probs=267.3

Q ss_pred             HHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 018582            6 EALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRD   85 (353)
Q Consensus         6 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~   85 (353)
                      ...|........ .+...|..+...+.+.|++++|+..|+++.+.. +.+..+|..+..++...|++++|...|+++.+.
T Consensus        12 ~~~~~~~~~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   89 (450)
T 2y4t_A           12 DLGTENLYFQSM-ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL   89 (450)
T ss_dssp             -----------C-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cccccccccccH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            344444444432 567889999999999999999999999998753 456788999999999999999999999999997


Q ss_pred             CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCH---HHHHHH------------HHHHHccCCHHHHHHHH
Q 018582           86 GRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDL---SAYQFL------------ITLYGQTGNLSEVYRIW  150 (353)
Q Consensus        86 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~  150 (353)
                        .+.+..++..+..+|.+.|++++|...|+++....+. +.   .++..+            ...+...|++++|+..|
T Consensus        90 --~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~  166 (450)
T 2y4t_A           90 --KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFL  166 (450)
T ss_dssp             --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             --CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence              4667889999999999999999999999999876433 33   555555            44488999999999999


Q ss_pred             HHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 018582          151 RSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADP  230 (353)
Q Consensus       151 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p  230 (353)
                      +++.+..+ .+..++..+..++...|++++|.+.++++.+..+ .+..++..+...|...|++++|...|+++.+... .
T Consensus       167 ~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~  243 (450)
T 2y4t_A          167 DKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-D  243 (450)
T ss_dssp             HHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-T
T ss_pred             HHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C
Confidence            99988765 4778899999999999999999999999988753 4789999999999999999999999999987632 2


Q ss_pred             ChhhHHHH------------HHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc-----HHHHHHHHHHHHhcCChhhHH
Q 018582          231 NAKTWEIF------------SDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-----SETIRTFMRHFEQEKDVDGAE  293 (353)
Q Consensus       231 ~~~~~~~l------------i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~  293 (353)
                      +...+..+            ...+.+.|++++|.++|+++.+..        |+     ...+..+..++.+.|++++|.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~~~~~l~~~~~~~g~~~~A~  315 (450)
T 2y4t_A          244 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--------PSIAEYTVRSKERICHCFSKDEKPVEAI  315 (450)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------CSSHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CcchHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            34445444            788999999999999999999976        44     457888999999999999999


Q ss_pred             HHHHHHHhcCCCCChhhhHHHHHHHHHcCCChHHHHHHHHhCCCccCHhHHHHHHH
Q 018582          294 GFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLLEA  349 (353)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~~~~l~~  349 (353)
                      ..++++.+..+ .+..+|..++.+|...|++.+++...-+...+.|+.......++
T Consensus       316 ~~~~~a~~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  370 (450)
T 2y4t_A          316 RVCSEVLQMEP-DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLE  370 (450)
T ss_dssp             HHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred             HHHHHHHHhCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence            99999999887 78999999999999999977766544445557787665444433

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.95  E-value=2.2e-24  Score=187.61  Aligned_cols=300  Identities=11%  Similarity=0.059  Sum_probs=258.0

Q ss_pred             ChHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 018582            1 MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIE   80 (353)
Q Consensus         1 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~   80 (353)
                      .+++|+++|+.+.+... .+..+|..+...+...|++++|++.|+++.+.+ +.+..++..+..++...|++++|...|+
T Consensus        41 ~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~  118 (450)
T 2y4t_A           41 QLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFK  118 (450)
T ss_dssp             CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            36899999999987653 578899999999999999999999999999864 4456788999999999999999999999


Q ss_pred             HHHHcCCCCCcH---HHHHHH------------HHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHH
Q 018582           81 EMKRDGRVAADW---TTFSNL------------ASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSE  145 (353)
Q Consensus        81 ~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  145 (353)
                      ++.+.  .+.+.   ..+..+            ...+.+.|++++|...|+++....+. +..++..+...|...|++++
T Consensus       119 ~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~  195 (450)
T 2y4t_A          119 KVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRK  195 (450)
T ss_dssp             HHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGG
T ss_pred             HHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHH
Confidence            99985  34444   555555            44589999999999999999886554 78899999999999999999


Q ss_pred             HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHH------------HHHHHhcCCh
Q 018582          146 VYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVM------------IGAYAKEGRL  213 (353)
Q Consensus       146 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------i~~~~~~g~~  213 (353)
                      |++.|+++.+..+ .+..++..+..++...|++++|...++++....+. +...+..+            ...+...|++
T Consensus       196 A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  273 (450)
T 2y4t_A          196 AISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRY  273 (450)
T ss_dssp             GHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence            9999999988754 46789999999999999999999999999877543 55555555            8889999999


Q ss_pred             HHHHHHHHHHHhcCCCCC-----hhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCC
Q 018582          214 ENAEELKERARRRGADPN-----AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKD  288 (353)
Q Consensus       214 ~~a~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  288 (353)
                      ++|...|+++.+.  .|+     ...+..+...+.+.|++++|++.++++.+..       +.+..+|..+..+|...|+
T Consensus       274 ~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-------p~~~~~~~~l~~~~~~~~~  344 (450)
T 2y4t_A          274 TDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-------PDNVNALKDRAEAYLIEEM  344 (450)
T ss_dssp             HHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHhcC
Confidence            9999999999885  344     3478888999999999999999999999875       1368899999999999999


Q ss_pred             hhhHHHHHHHHHhcCCCCChhhhHHHHHH
Q 018582          289 VDGAEGFLEILKKAVDDLGVEVFEPLIRT  317 (353)
Q Consensus       289 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  317 (353)
                      +++|...++++.+..| .+...+..+..+
T Consensus       345 ~~~A~~~~~~al~~~p-~~~~~~~~l~~~  372 (450)
T 2y4t_A          345 YDEAIQDYETAQEHNE-NDQQIREGLEKA  372 (450)
T ss_dssp             HHHHHHHHHHHHTTSS-SCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCc-chHHHHHHHHHH
Confidence            9999999999999888 788888888844

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.94  E-value=1.3e-22  Score=170.79  Aligned_cols=310  Identities=9%  Similarity=0.007  Sum_probs=259.5

Q ss_pred             CchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 018582           20 SSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLA   99 (353)
Q Consensus        20 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~   99 (353)
                      |+..+..+...+...|++++|++.|+++.+.. +.+..++..+..++...|++++|...++++.+.  .+.+...+..+.
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~   78 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL--KMDFTAARLQRG   78 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcchHHHHHH
Confidence            45678888999999999999999999998863 445778889999999999999999999999987  456778899999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHccCC--CCHHHHHHH------------HHHHHccCCHHHHHHHHHHHHHhCCCCChhHH
Q 018582          100 SIYVEAGLFEKAERALKELENRNAH--RDLSAYQFL------------ITLYGQTGNLSEVYRIWRSLRLAFPNTANISY  165 (353)
Q Consensus       100 ~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  165 (353)
                      .++...|++++|...+++..+..+.  .+...+..+            ...+...|++++|.+.++++.+..+ .+...+
T Consensus        79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~  157 (359)
T 3ieg_A           79 HLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELR  157 (359)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred             HHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHH
Confidence            9999999999999999999876441  144445444            5788999999999999999988765 467889


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHH---------
Q 018582          166 LNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWE---------  236 (353)
Q Consensus       166 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~---------  236 (353)
                      ..+..++...|++++|...++++.+..+ .+..++..+...|...|++++|...+++..+.... +...+.         
T Consensus       158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~  235 (359)
T 3ieg_A          158 ELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLN  235 (359)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHH
Confidence            9999999999999999999999998764 47889999999999999999999999999876322 333333         


Q ss_pred             ---HHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc-H----HHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCh
Q 018582          237 ---IFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-S----ETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGV  308 (353)
Q Consensus       237 ---~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  308 (353)
                         .+...+.+.|++++|.+.++++.+..        |+ .    ..+..+..++.+.|++++|...++++.+..+ .++
T Consensus       236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~  306 (359)
T 3ieg_A          236 KLIESAEELIRDGRYTDATSKYESVMKTE--------PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP-DNV  306 (359)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-ccH
Confidence               23666889999999999999999976        43 2    3455678899999999999999999999887 789


Q ss_pred             hhhHHHHHHHHHcCCChHHHHHHHHhCCCccCHhHH
Q 018582          309 EVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASK  344 (353)
Q Consensus       309 ~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~~  344 (353)
                      .+|..+...|.+.|++.+++-...+...+.|+....
T Consensus       307 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~  342 (359)
T 3ieg_A          307 NALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQI  342 (359)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHH
Confidence            999999999999999777765555555667876543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.4e-23  Score=185.43  Aligned_cols=329  Identities=12%  Similarity=0.058  Sum_probs=214.8

Q ss_pred             hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 018582            2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEE   81 (353)
Q Consensus         2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~   81 (353)
                      +++|++.|+.+...+  |+..+|..+..++.+.|++++|++.|+++.+.+ +.+..+|..+..++...|++++|...|++
T Consensus        22 ~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~   98 (514)
T 2gw1_A           22 YDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSV   98 (514)
T ss_dssp             HHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            567778888777765  577777777788888888888888888777653 33445677777777777777777777777


Q ss_pred             HHHcCCC-------------------------------------------------------------------------
Q 018582           82 MKRDGRV-------------------------------------------------------------------------   88 (353)
Q Consensus        82 ~~~~~~~-------------------------------------------------------------------------   88 (353)
                      +...++.                                                                         
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (514)
T 2gw1_A           99 LSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFA  178 (514)
T ss_dssp             HHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCS
T ss_pred             HHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHH
Confidence            6554210                                                                         


Q ss_pred             -------------------------------------------------------CCcHHHHHHHHHHHHhcCCHHHHHH
Q 018582           89 -------------------------------------------------------AADWTTFSNLASIYVEAGLFEKAER  113 (353)
Q Consensus        89 -------------------------------------------------------~~~~~~~~~l~~~~~~~~~~~~a~~  113 (353)
                                                                             +.+..++..+...+...|++++|..
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  258 (514)
T 2gw1_A          179 NYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHE  258 (514)
T ss_dssp             SCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             HhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHH
Confidence                                                                   0112233334444444455555555


Q ss_pred             HHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 018582          114 ALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCA  193 (353)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  193 (353)
                      .++++....+.  ..++..+...+...|++++|.+.++++....+ .+..++..+...+...|++++|...++++.+..+
T Consensus       259 ~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  335 (514)
T 2gw1_A          259 DIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP  335 (514)
T ss_dssp             HHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS
T ss_pred             HHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh
Confidence            55554443322  44455555555555555555555555544432 2344555566666666666666666666665543


Q ss_pred             CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc-
Q 018582          194 TYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-  272 (353)
Q Consensus       194 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-  272 (353)
                      . +...+..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+....     .++ 
T Consensus       336 ~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~  408 (514)
T 2gw1_A          336 E-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK-----LDGI  408 (514)
T ss_dssp             S-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-----SSSC
T ss_pred             h-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc-----cchH
Confidence            3 55566666777777777777777777766553 224566777777788888888888888887775411     011 


Q ss_pred             ---HHHHHHHHHHHHh---cCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChHHHHHHHHhCCCccCHhHH
Q 018582          273 ---SETIRTFMRHFEQ---EKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASK  344 (353)
Q Consensus       273 ---~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~~  344 (353)
                         ...+..+...+..   .|++++|...++++.+..+ .+..++..+...|.+.|++.+++-..-+...+.|+....
T Consensus       409 ~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  485 (514)
T 2gw1_A          409 YVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP-RSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEK  485 (514)
T ss_dssp             SSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHH
Confidence               3388899999999   9999999999999999888 788999999999999999666654334444456665543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.93  E-value=1.5e-22  Score=168.61  Aligned_cols=293  Identities=11%  Similarity=-0.027  Sum_probs=254.3

Q ss_pred             CCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHH
Q 018582           17 LGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFS   96 (353)
Q Consensus        17 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   96 (353)
                      .+.+...+..+...+...|++++|+++|+++.+.. +.+...+..++.++...|++++|..+++++.+.  .+.+..++.
T Consensus        18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~   94 (330)
T 3hym_B           18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDL--YPSNPVSWF   94 (330)
T ss_dssp             --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHH
T ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHH
Confidence            34677888999999999999999999999998864 456667888889999999999999999999987  566778889


Q ss_pred             HHHHHHHhcC-CHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 018582           97 NLASIYVEAG-LFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNL  175 (353)
Q Consensus        97 ~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  175 (353)
                      .+...+...| ++++|...|++.....+. +..+|..+...+...|++++|.+.+++..+..+. +...+..+...+...
T Consensus        95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~  172 (330)
T 3hym_B           95 AVGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLT  172 (330)
T ss_dssp             HHHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHH
Confidence            9999999999 999999999999876554 6778999999999999999999999999887653 456777799999999


Q ss_pred             CChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--------CCCChhhHHHHHHHHHccCC
Q 018582          176 KDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRG--------ADPNAKTWEIFSDYYLRNGD  247 (353)
Q Consensus       176 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--------~~p~~~~~~~li~~~~~~~~  247 (353)
                      |++++|...+++..+..+. +...+..+...+...|++++|...+++..+..        .+.+..++..+...+...|+
T Consensus       173 ~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  251 (330)
T 3hym_B          173 NNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK  251 (330)
T ss_dssp             TCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred             hhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence            9999999999999987644 78899999999999999999999999987642        13345788999999999999


Q ss_pred             hHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHH-HcCC
Q 018582          248 MKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYA-AAGR  323 (353)
Q Consensus       248 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~  323 (353)
                      +++|.+.+++..+...       .+...+..+...+.+.|++++|...++++.+..+ .+...+..+..++. ..|+
T Consensus       252 ~~~A~~~~~~a~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~g~  320 (330)
T 3hym_B          252 YAEALDYHRQALVLIP-------QNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR-DDTFSVTMLGHCIEMYIGD  320 (330)
T ss_dssp             HHHHHHHHHHHHHHST-------TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS-CCHHHHHHHHHHHHTTTTC
T ss_pred             HHHHHHHHHHHHhhCc-------cchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC-CchHHHHHHHHHHHHHhCc
Confidence            9999999999998861       3578899999999999999999999999999888 78899999999884 4454

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.93  E-value=4.6e-22  Score=167.45  Aligned_cols=304  Identities=11%  Similarity=0.037  Sum_probs=256.1

Q ss_pred             ChHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 018582            1 MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIE   80 (353)
Q Consensus         1 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~   80 (353)
                      .+++|++.|+.+.+... .+..+|..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|...|+
T Consensus        18 ~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~   95 (359)
T 3ieg_A           18 QLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFK   95 (359)
T ss_dssp             CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHH
Confidence            36899999999988764 567889999999999999999999999998863 3356788999999999999999999999


Q ss_pred             HHHHcCCCC---CcHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHH
Q 018582           81 EMKRDGRVA---ADWTTFSNL------------ASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSE  145 (353)
Q Consensus        81 ~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  145 (353)
                      ++.+.  .+   .+...+..+            ...+...|++++|...++++.+..+. +..++..+...+...|++++
T Consensus        96 ~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  172 (359)
T 3ieg_A           96 KVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRK  172 (359)
T ss_dssp             HHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHH
Confidence            99985  23   355555555            58899999999999999999887654 78899999999999999999


Q ss_pred             HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHH------------HHHHHHHhcCCh
Q 018582          146 VYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTN------------VMIGAYAKEGRL  213 (353)
Q Consensus       146 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~li~~~~~~g~~  213 (353)
                      |...+++.....+ .+..++..+...+...|++++|...+++..+..+. +...+.            .+...+.+.|++
T Consensus       173 A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  250 (359)
T 3ieg_A          173 AISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRY  250 (359)
T ss_dssp             HHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence            9999999988754 46788999999999999999999999999887544 444333            236678999999


Q ss_pred             HHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCCh
Q 018582          214 ENAEELKERARRRGADPNA----KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDV  289 (353)
Q Consensus       214 ~~a~~~~~~~~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  289 (353)
                      ++|...++++.+.... +.    ..+..+...+...|++++|.+.+++..+..       +.+..++..+...+.+.|++
T Consensus       251 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~g~~  322 (359)
T 3ieg_A          251 TDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-------PDNVNALKDRAEAYLIEEMY  322 (359)
T ss_dssp             HHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcCCH
Confidence            9999999999886432 22    234557788999999999999999999986       13688999999999999999


Q ss_pred             hhHHHHHHHHHhcCCCCChhhhHHHHHHHHH
Q 018582          290 DGAEGFLEILKKAVDDLGVEVFEPLIRTYAA  320 (353)
Q Consensus       290 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  320 (353)
                      ++|...++++.+..| .+...+..+..+...
T Consensus       323 ~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~  352 (359)
T 3ieg_A          323 DEAIQDYEAAQEHNE-NDQQIREGLEKAQRL  352 (359)
T ss_dssp             HHHHHHHHHHHTTCT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCC-CChHHHHHHHHHHHH
Confidence            999999999999988 778888888777654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.92  E-value=1.7e-21  Score=162.19  Aligned_cols=293  Identities=8%  Similarity=-0.059  Sum_probs=246.9

Q ss_pred             CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHH
Q 018582           52 IMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQ  131 (353)
Q Consensus        52 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  131 (353)
                      .+.+...+..+...+...|++++|.++|+++.+.  .+.+...+..++.++...|++++|...++++.+..+. +..+|.
T Consensus        18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~   94 (330)
T 3hym_B           18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEK--DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWF   94 (330)
T ss_dssp             --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHH
T ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHH
Confidence            4567888889999999999999999999999987  4666677778889999999999999999999887654 678899


Q ss_pred             HHHHHHHccC-CHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc
Q 018582          132 FLITLYGQTG-NLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKE  210 (353)
Q Consensus       132 ~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  210 (353)
                      .+...+...| ++++|.+.|++.....+ .+...+..+...+...|++++|...++++.+..+. +...+..+...|...
T Consensus        95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~  172 (330)
T 3hym_B           95 AVGCYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLT  172 (330)
T ss_dssp             HHHHHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHH
Confidence            9999999999 99999999999987754 35678899999999999999999999999987644 567788899999999


Q ss_pred             CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCC--CcccHHHHHHHHHHHHhcCC
Q 018582          211 GRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGK--WVPSSETIRTFMRHFEQEKD  288 (353)
Q Consensus       211 g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~  288 (353)
                      |++++|...+++..+.. +.+...+..+...+...|++++|.+.++++.+........  ......++..+..++.+.|+
T Consensus       173 ~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  251 (330)
T 3hym_B          173 NNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK  251 (330)
T ss_dssp             TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred             hhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence            99999999999999874 3367889999999999999999999999998863111000  12346789999999999999


Q ss_pred             hhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChHHHHHHHHhCCCccCHhHHHHHHHHh
Q 018582          289 VDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLLEAIC  351 (353)
Q Consensus       289 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~~~~l~~~c  351 (353)
                      +++|...++++.+..+ .+..+|..+...|.+.|+..+++...-+...+.|+.......++.|
T Consensus       252 ~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  313 (330)
T 3hym_B          252 YAEALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHC  313 (330)
T ss_dssp             HHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHH
Confidence            9999999999999988 7899999999999999998877766666667788766555544443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1.4e-21  Score=172.68  Aligned_cols=291  Identities=10%  Similarity=-0.036  Sum_probs=204.8

Q ss_pred             chhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q 018582           21 SMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLAS  100 (353)
Q Consensus        21 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  100 (353)
                      +..|..+...+.+.|++++|+..|+++...+  |+..+|..+..++...|++++|...++++.+.  .+.+..++..+..
T Consensus         6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~   81 (514)
T 2gw1_A            6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALEL--KPDYSKVLLRRAS   81 (514)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhcc--ChHHHHHHHHHHH
Confidence            4567788889999999999999999999865  79999999999999999999999999999997  4677889999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHccCCC-------------------------------------------------------
Q 018582          101 IYVEAGLFEKAERALKELENRNAHR-------------------------------------------------------  125 (353)
Q Consensus       101 ~~~~~~~~~~a~~~~~~~~~~~~~~-------------------------------------------------------  125 (353)
                      ++.+.|++++|...|+++...++..                                                       
T Consensus        82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (514)
T 2gw1_A           82 ANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV  161 (514)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence            9999999999999999887654311                                                       


Q ss_pred             -----------------------CHHHHHHHHHHHHc---cCCHHHHHHHHHHHHH-----h--CC------CCChhHHH
Q 018582          126 -----------------------DLSAYQFLITLYGQ---TGNLSEVYRIWRSLRL-----A--FP------NTANISYL  166 (353)
Q Consensus       126 -----------------------~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~--~~------~~~~~~~~  166 (353)
                                             +...+......+..   .|++++|...|+++..     .  .+      +.+..++.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (514)
T 2gw1_A          162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE  241 (514)
T ss_dssp             HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence                                   02222223333332   6777777777777666     2  11      11234566


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccC
Q 018582          167 NMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNG  246 (353)
Q Consensus       167 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~  246 (353)
                      .+...+...|++++|...++++.+..+.  ...+..+...|...|++++|...++++.+.. +.+...+..+...+...|
T Consensus       242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~  318 (514)
T 2gw1_A          242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ  318 (514)
T ss_dssp             HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence            6667777777777777777777665433  6666666777777777777777777766543 224556666666667777


Q ss_pred             ChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChH
Q 018582          247 DMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSP  326 (353)
Q Consensus       247 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  326 (353)
                      ++++|...++++.+...       .+...+..+...+...|++++|...++++.+..+ .+..+|..+...|.+.|++.+
T Consensus       319 ~~~~A~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~  390 (514)
T 2gw1_A          319 NYDQAGKDFDKAKELDP-------ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDK  390 (514)
T ss_dssp             CTTHHHHHHHHHHHTCS-------SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHH
T ss_pred             CHHHHHHHHHHHHHhCh-------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHH
Confidence            77777777777666541       2345566666666666666666666666666655 555666666666666666443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.91  E-value=2.7e-21  Score=171.86  Aligned_cols=317  Identities=13%  Similarity=0.077  Sum_probs=252.6

Q ss_pred             hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 018582            2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEE   81 (353)
Q Consensus         2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~   81 (353)
                      +++|++.|+.+....+ .++.+|..+..+|.+.|++++|++.|+++.+.+ +.+..++..+..++...|++++|...|+.
T Consensus        41 ~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~  118 (537)
T 3fp2_A           41 FNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLSV  118 (537)
T ss_dssp             CC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            5678888888887763 567888888999999999999999999988754 34566778888888888888888776642


Q ss_pred             H-------------------------------------------------------------------------------
Q 018582           82 M-------------------------------------------------------------------------------   82 (353)
Q Consensus        82 ~-------------------------------------------------------------------------------   82 (353)
                      +                                                                               
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (537)
T 3fp2_A          119 LSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSD  198 (537)
T ss_dssp             HC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHH
T ss_pred             HhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHH
Confidence            2                                                                               


Q ss_pred             ------------------------------HHcCCCCCc-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCC
Q 018582           83 ------------------------------KRDGRVAAD-------WTTFSNLASIYVEAGLFEKAERALKELENRNAHR  125 (353)
Q Consensus        83 ------------------------------~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  125 (353)
                                                    .+.  .+.+       ..++..+...+...|++++|...+++.....  |
T Consensus       199 ~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~  274 (537)
T 3fp2_A          199 ALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--P  274 (537)
T ss_dssp             HHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--C
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--C
Confidence                                          111  1111       2245566677888999999999999998764  4


Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 018582          126 DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIG  205 (353)
Q Consensus       126 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~  205 (353)
                      +..++..+...+...|++++|.+.++++.+..+ .+..++..+...+...|++++|...++++.+..+. +...+..+..
T Consensus       275 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~  352 (537)
T 3fp2_A          275 TPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLAC  352 (537)
T ss_dssp             CHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHH
T ss_pred             CchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence            578899999999999999999999999988765 36778999999999999999999999999887644 6788999999


Q ss_pred             HHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHh
Q 018582          206 AYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQ  285 (353)
Q Consensus       206 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  285 (353)
                      .|...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+..... .........+......+.+
T Consensus       353 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~~a~~~~~  430 (537)
T 3fp2_A          353 LLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ-EKIHVGIGPLIGKATILAR  430 (537)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC-SSCSSTTHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc-hhhHHHHHHHHHHHHHHHH
Confidence            9999999999999999998874 3356788999999999999999999999988864110 0011122334555667777


Q ss_pred             c----------CChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChHHHH
Q 018582          286 E----------KDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVML  329 (353)
Q Consensus       286 ~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~  329 (353)
                      .          |++++|...++++.+..+ .+..+|..+...|.+.|+..+++-
T Consensus       431 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~  483 (537)
T 3fp2_A          431 QSSQDPTQLDEEKFNAAIKLLTKACELDP-RSEQAKIGLAQLKLQMEKIDEAIE  483 (537)
T ss_dssp             HHTC----CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhhccchhhhHhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHH
Confidence            7          999999999999999988 888999999999999999666553

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.91  E-value=1.3e-21  Score=165.51  Aligned_cols=284  Identities=11%  Similarity=-0.017  Sum_probs=229.0

Q ss_pred             HHhcCCcchHHH-HHHHHHHCCC-CC--CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcC
Q 018582           31 YAKTGHPEKIPA-IIQEMKASSI-MP--DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAG  106 (353)
Q Consensus        31 ~~~~~~~~~a~~-~~~~m~~~~~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  106 (353)
                      +...|++++|++ .|++...... .|  +...+..+...+...|++++|...|+++.+.  .+.+..++..+..++.+.|
T Consensus        35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g  112 (368)
T 1fch_A           35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENE  112 (368)
T ss_dssp             -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCc
Confidence            445678889988 8876654311 11  3567888999999999999999999999997  5678889999999999999


Q ss_pred             CHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHH-H--------------HHHH
Q 018582          107 LFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYL-N--------------MIQV  171 (353)
Q Consensus       107 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~--------------l~~~  171 (353)
                      ++++|...|+++....+. +..++..+...+...|++++|.+.++++....+.. ...+. .              .+..
T Consensus       113 ~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  190 (368)
T 1fch_A          113 QELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPAY-AHLVTPAEEGAGGAGLGPSKRILGS  190 (368)
T ss_dssp             CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT-GGGCC---------------CTTHH
T ss_pred             CHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHhhhhcccHHHHHHHH
Confidence            999999999999887654 78899999999999999999999999998876532 22222 1              2333


Q ss_pred             HHhcCChhHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHH
Q 018582          172 LVNLKDLPGAEKCFKEWESGCATY-DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKL  250 (353)
Q Consensus       172 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~  250 (353)
                      +...|++++|...++++.+..+.. +..++..+...|...|++++|...|+++.+.. +.+..++..+...+...|++++
T Consensus       191 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~  269 (368)
T 1fch_A          191 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEE  269 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHH
Confidence            448999999999999998875432 57899999999999999999999999998864 3357889999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC-----------hhhhHHHHHHHH
Q 018582          251 AVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLG-----------VEVFEPLIRTYA  319 (353)
Q Consensus       251 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~  319 (353)
                      |++.++++.+..       +.+...+..+..++.+.|++++|...++++.+..+ .+           ..+|..+..+|.
T Consensus       270 A~~~~~~al~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~  341 (368)
T 1fch_A          270 AVAAYRRALELQ-------PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR-KSRGPRGEGGAMSENIWSTLRLALS  341 (368)
T ss_dssp             HHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-TC------CCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCCCccccccchhhHHHHHHHHHHH
Confidence            999999999876       13578899999999999999999999999998766 33           789999999999


Q ss_pred             HcCCChHH
Q 018582          320 AAGRTSPV  327 (353)
Q Consensus       320 ~~g~~~~~  327 (353)
                      ..|+..++
T Consensus       342 ~~g~~~~A  349 (368)
T 1fch_A          342 MLGQSDAY  349 (368)
T ss_dssp             HHTCGGGH
T ss_pred             HhCChHhH
Confidence            99995443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.90  E-value=1.4e-21  Score=165.30  Aligned_cols=274  Identities=12%  Similarity=-0.021  Sum_probs=228.4

Q ss_pred             CchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 018582           20 SSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLA   99 (353)
Q Consensus        20 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~   99 (353)
                      +...+..+...+.+.|++++|...|+++.+.. +.+..++..+..++...|++++|...|+++.+.  .+.+..++..+.
T Consensus        63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~  139 (368)
T 1fch_A           63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLEL--KPDNQTALMALA  139 (368)
T ss_dssp             TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred             chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhc--CCCCHHHHHHHH
Confidence            45678899999999999999999999999864 456678899999999999999999999999997  467888999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHH---------------HHHHHHccCCHHHHHHHHHHHHHhCCCC-Chh
Q 018582          100 SIYVEAGLFEKAERALKELENRNAHRDLSAYQF---------------LITLYGQTGNLSEVYRIWRSLRLAFPNT-ANI  163 (353)
Q Consensus       100 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~  163 (353)
                      .++...|++++|...++++....+. +...+..               .+..+...|++++|...|+++....+.. +..
T Consensus       140 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~  218 (368)
T 1fch_A          140 VSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPD  218 (368)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHH
Confidence            9999999999999999999886544 2222221               2333448899999999999998876532 578


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 018582          164 SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYL  243 (353)
Q Consensus       164 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~  243 (353)
                      ++..+...+...|++++|...++++....+. +..++..+...+...|++++|...|+++.+.. +.+...+..+...|.
T Consensus       219 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~  296 (368)
T 1fch_A          219 VQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCI  296 (368)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence            8999999999999999999999999887643 78899999999999999999999999998864 336788999999999


Q ss_pred             ccCChHHHHHHHHHHHHcCCCCCC---C-CcccHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 018582          244 RNGDMKLAVDCLEKAIDTGRGDGG---K-WVPSSETIRTFMRHFEQEKDVDGAEGFLEIL  299 (353)
Q Consensus       244 ~~~~~~~a~~~~~~~~~~~~~~~~---~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  299 (353)
                      +.|++++|.+.++++.+......+   . ......+|..+..++...|++++|..++++.
T Consensus       297 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  356 (368)
T 1fch_A          297 NLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD  356 (368)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence            999999999999999887511000   0 0012688999999999999999999987643

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.90  E-value=1.9e-21  Score=164.33  Aligned_cols=274  Identities=12%  Similarity=-0.039  Sum_probs=222.3

Q ss_pred             CchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 018582           20 SSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLA   99 (353)
Q Consensus        20 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~   99 (353)
                      +...|..+...+.+.|++++|.+.|+++.+.. +.+..+|..+..++...|++++|...|+++.+.  .+.+..++..+.
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~  140 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLEL--QPNNLKALMALA  140 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHH
Confidence            45669999999999999999999999998864 456778999999999999999999999999997  466788999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHccCCC---------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC-CChhHHHHHH
Q 018582          100 SIYVEAGLFEKAERALKELENRNAHR---------DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN-TANISYLNMI  169 (353)
Q Consensus       100 ~~~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~  169 (353)
                      .+|...|++++|...++++.+..+..         ....+..+...+...|++++|++.|+++.+..+. ++..++..+.
T Consensus       141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~  220 (365)
T 4eqf_A          141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG  220 (365)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred             HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence            99999999999999999997754320         1223344578899999999999999999888653 2678899999


Q ss_pred             HHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChH
Q 018582          170 QVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMK  249 (353)
Q Consensus       170 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~  249 (353)
                      ..+...|++++|...++++.+..+. +..+|..+..+|...|++++|...|++..+.. +.+..++..+...|...|+++
T Consensus       221 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~  298 (365)
T 4eqf_A          221 VLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYR  298 (365)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence            9999999999999999999987644 78899999999999999999999999999864 235788999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCCC-----CcccHHHHHHHHHHHHhcCChhhHHHHHHH
Q 018582          250 LAVDCLEKAIDTGRGDGGK-----WVPSSETIRTFMRHFEQEKDVDGAEGFLEI  298 (353)
Q Consensus       250 ~a~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  298 (353)
                      +|.+.|+++.+......+.     ...+..+|..+..++...|+.+.+.++.++
T Consensus       299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            9999999998875110000     001357889999999999999888877654

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.89  E-value=2.3e-21  Score=163.89  Aligned_cols=259  Identities=12%  Similarity=0.020  Sum_probs=216.9

Q ss_pred             CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHH
Q 018582           55 DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLI  134 (353)
Q Consensus        55 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  134 (353)
                      +...+..+...+.+.|++++|...|+++.+.  .+.+..++..+..+|.+.|++++|...|++.....+. +..++..+.
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~  140 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ--DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALA  140 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHH
Confidence            4556889999999999999999999999997  5778899999999999999999999999999887654 688999999


Q ss_pred             HHHHccCCHHHHHHHHHHHHHhCCCC---------ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-cHHHHHHHH
Q 018582          135 TLYGQTGNLSEVYRIWRSLRLAFPNT---------ANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATY-DIRVTNVMI  204 (353)
Q Consensus       135 ~~~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li  204 (353)
                      ..|...|++++|+..|+++.+..+..         ....+..+...+...|++++|...++++.+..+.. +..++..+.
T Consensus       141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~  220 (365)
T 4eqf_A          141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG  220 (365)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred             HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence            99999999999999999998764321         01223345788999999999999999999875432 688999999


Q ss_pred             HHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcc-cHHHHHHHHHHH
Q 018582          205 GAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHF  283 (353)
Q Consensus       205 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~  283 (353)
                      ..|...|++++|...|++..+.. +.+..+|..+...|...|++++|++.++++.+..        | +..++..+..+|
T Consensus       221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~  291 (365)
T 4eqf_A          221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ--------PGFIRSRYNLGISC  291 (365)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCchHHHHHHHHHH
Confidence            99999999999999999999874 3367899999999999999999999999999986        4 478899999999


Q ss_pred             HhcCChhhHHHHHHHHHhcCCC-----------CChhhhHHHHHHHHHcCCCh
Q 018582          284 EQEKDVDGAEGFLEILKKAVDD-----------LGVEVFEPLIRTYAAAGRTS  325 (353)
Q Consensus       284 ~~~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~  325 (353)
                      .+.|++++|...++++.+..+.           .+..+|..+..++...|+..
T Consensus       292 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  344 (365)
T 4eqf_A          292 INLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPE  344 (365)
T ss_dssp             HHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHH
T ss_pred             HHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHH
Confidence            9999999999999999886542           14678999999999999844

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.88  E-value=2.3e-20  Score=155.04  Aligned_cols=275  Identities=10%  Similarity=-0.060  Sum_probs=227.2

Q ss_pred             CchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 018582           20 SSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLA   99 (353)
Q Consensus        20 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~   99 (353)
                      +...+..+...+...|++++|...|+++.+.. +.+..++..+..++...|++++|...++++.+.  .+.+..++..+.
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la   96 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALA   96 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcCCHHHHHHHH
Confidence            55677888899999999999999999998863 446678888999999999999999999999997  466788999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHH--------------HH-HHHccCCHHHHHHHHHHHHHhCCCCChhH
Q 018582          100 SIYVEAGLFEKAERALKELENRNAHRDLSAYQFL--------------IT-LYGQTGNLSEVYRIWRSLRLAFPNTANIS  164 (353)
Q Consensus       100 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  164 (353)
                      ..+...|++++|.+.++++....+. +...+..+              .. .+...|++++|.+.++++.+..+ .+..+
T Consensus        97 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~  174 (327)
T 3cv0_A           97 VSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQL  174 (327)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHH
Confidence            9999999999999999999876543 33333333              22 37788999999999999988765 36788


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHc
Q 018582          165 YLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLR  244 (353)
Q Consensus       165 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~  244 (353)
                      +..+...+...|++++|...++++.+..+. +..++..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus       175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~  252 (327)
T 3cv0_A          175 HASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSN  252 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            999999999999999999999999887643 78899999999999999999999999998864 3367889999999999


Q ss_pred             cCChHHHHHHHHHHHHcCCCCCCCC-----cccHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 018582          245 NGDMKLAVDCLEKAIDTGRGDGGKW-----VPSSETIRTFMRHFEQEKDVDGAEGFLEILKK  301 (353)
Q Consensus       245 ~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  301 (353)
                      .|++++|.+.++++.+.........     ..+...+..+..++.+.|++++|..++++..+
T Consensus       253 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~  314 (327)
T 3cv0_A          253 MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE  314 (327)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred             hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            9999999999999988752100000     00467889999999999999999998875443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.88  E-value=5.9e-20  Score=163.24  Aligned_cols=289  Identities=12%  Similarity=0.008  Sum_probs=167.7

Q ss_pred             CchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 018582           20 SSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLA   99 (353)
Q Consensus        20 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~   99 (353)
                      ....|..+...+.+.|++++|++.|+++.+.. +.+..+|..+..++...|++++|.+.|+++.+.  .+.+..++..+.
T Consensus        24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la  100 (537)
T 3fp2_A           24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEI--KPDHSKALLRRA  100 (537)
T ss_dssp             HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHH
Confidence            34668888999999999999999999999864 456788999999999999999999999999997  467788999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHccCCC-------------------------------------CHH--------------
Q 018582          100 SIYVEAGLFEKAERALKELENRNAHR-------------------------------------DLS--------------  128 (353)
Q Consensus       100 ~~~~~~~~~~~a~~~~~~~~~~~~~~-------------------------------------~~~--------------  128 (353)
                      .++...|++++|...|+.+.. .+.+                                     +..              
T Consensus       101 ~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (537)
T 3fp2_A          101 SANESLGNFTDAMFDLSVLSL-NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE  179 (537)
T ss_dssp             HHHHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHhc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence            999999999999998853311 1100                                     000              


Q ss_pred             ----------------HHHHHHHHHHc--------cCCHHHHHHHHHHHHHhCCCCC------hhHHHHHHHHHHhcCCh
Q 018582          129 ----------------AYQFLITLYGQ--------TGNLSEVYRIWRSLRLAFPNTA------NISYLNMIQVLVNLKDL  178 (353)
Q Consensus       129 ----------------~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~  178 (353)
                                      ....+...+..        .|++++|..+++++.+..+...      ..++..+...+...|++
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~  259 (537)
T 3fp2_A          180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNL  259 (537)
T ss_dssp             HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccH
Confidence                            00111111110        1244455555555444332110      11234444445555555


Q ss_pred             hHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHH
Q 018582          179 PGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKA  258 (353)
Q Consensus       179 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~  258 (353)
                      ++|...+++..+..+  +...+..+...+...|++++|...++++.+... .+..++..+...+...|++++|.+.++++
T Consensus       260 ~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  336 (537)
T 3fp2_A          260 LDAQVLLQESINLHP--TPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKA  336 (537)
T ss_dssp             HHHHHHHHHHHHHCC--CHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCC--CchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            555555555554432  244445555555555555555555555544321 23444555555555555555555555555


Q ss_pred             HHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCC
Q 018582          259 IDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR  323 (353)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  323 (353)
                      .+...       .+...+..+...+...|++++|...++++.+..+ .+..+|..+...|...|+
T Consensus       337 ~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~  393 (537)
T 3fp2_A          337 QSLNP-------ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTDRGD  393 (537)
T ss_dssp             HHHCT-------TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTC
T ss_pred             HHhCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCC
Confidence            55430       1234445555555555555555555555555544 444555555555555555

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.87  E-value=3.5e-19  Score=147.93  Aligned_cols=261  Identities=11%  Similarity=0.012  Sum_probs=221.7

Q ss_pred             CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHH
Q 018582           55 DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLI  134 (353)
Q Consensus        55 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  134 (353)
                      +...+......+...|++++|..+|+++.+.  .+.+..++..+..++...|++++|...++++.+..+. +..++..+.
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la   96 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQA--APEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALA   96 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHH
Confidence            4556778888999999999999999999987  5668888999999999999999999999999887544 788999999


Q ss_pred             HHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHH--------------HH-HHHhcCChhHHHHHHHHHHhcCCCCcHHH
Q 018582          135 TLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNM--------------IQ-VLVNLKDLPGAEKCFKEWESGCATYDIRV  199 (353)
Q Consensus       135 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  199 (353)
                      ..+...|++++|.+.++++....+. +...+..+              .. .+...|++++|...++++.+..+. +...
T Consensus        97 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~  174 (327)
T 3cv0_A           97 VSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQL  174 (327)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHH
Confidence            9999999999999999999876543 23333333              22 377788999999999999987644 7889


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHH
Q 018582          200 TNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTF  279 (353)
Q Consensus       200 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l  279 (353)
                      +..+...|...|++++|...++++.+.. +.+..++..+...+...|++++|.+.++++.+...       .+...+..+
T Consensus       175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-------~~~~~~~~l  246 (327)
T 3cv0_A          175 HASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-------GYVRVMYNM  246 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------CCHHHHHHH
Confidence            9999999999999999999999998864 33678899999999999999999999999998861       357889999


Q ss_pred             HHHHHhcCChhhHHHHHHHHHhcCCCC-----------ChhhhHHHHHHHHHcCCChHHH
Q 018582          280 MRHFEQEKDVDGAEGFLEILKKAVDDL-----------GVEVFEPLIRTYAAAGRTSPVM  328 (353)
Q Consensus       280 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~~~  328 (353)
                      ...+.+.|++++|.+.++++.+..+..           +..+|..+..++.+.|+...+.
T Consensus       247 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  306 (327)
T 3cv0_A          247 AVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVE  306 (327)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHH
Confidence            999999999999999999999887732           6889999999999999965543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.85  E-value=7.6e-19  Score=143.10  Aligned_cols=258  Identities=15%  Similarity=0.092  Sum_probs=189.5

Q ss_pred             HHHHhcCCcchHHHHHHHHHHCCCCCCc--chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcC
Q 018582           29 TLYAKTGHPEKIPAIIQEMKASSIMPDS--YTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAG  106 (353)
Q Consensus        29 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  106 (353)
                      +.....|+++.|+..++.....  .|+.  .....+.+++...|+++.|...++.    . .+|+..++..+...+...+
T Consensus         7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~-~~~~~~a~~~la~~~~~~~   79 (291)
T 3mkr_A            7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----S-SAPELQAVRMFAEYLASHS   79 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----T-SCHHHHHHHHHHHHHHCST
T ss_pred             HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----c-CChhHHHHHHHHHHHcCCC
Confidence            3455678888888887765442  3443  3445667888888888888876543    2 5677778888888888888


Q ss_pred             CHHHHHHHHHHHHHccCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHH
Q 018582          107 LFEKAERALKELENRNAHR-DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCF  185 (353)
Q Consensus       107 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  185 (353)
                      +.++|++.++++...+..| +...+..+...+...|++++|++.+++      ..+...+..++..+.+.|++++|.+.+
T Consensus        80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l  153 (291)
T 3mkr_A           80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL  153 (291)
T ss_dssp             THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            8888888888887765434 456667777888888888888888876      356677888888888888888888888


Q ss_pred             HHHHhcCCCCcHHH--HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 018582          186 KEWESGCATYDIRV--TNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGR  263 (353)
Q Consensus       186 ~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~  263 (353)
                      +++.+..+. +...  ....+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|.+.+++.++.. 
T Consensus       154 ~~~~~~~p~-~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-  230 (291)
T 3mkr_A          154 KKMQDQDED-ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-  230 (291)
T ss_dssp             HHHHHHCTT-CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred             HHHHhhCcC-cHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence            888876532 2111  1223344445588888888888888763 4577788888888888888888888888888876 


Q ss_pred             CCCCCCcc-cHHHHHHHHHHHHhcCChhh-HHHHHHHHHhcCCCCChhh
Q 018582          264 GDGGKWVP-SSETIRTFMRHFEQEKDVDG-AEGFLEILKKAVDDLGVEV  310 (353)
Q Consensus       264 ~~~~~~~~-~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~  310 (353)
                             | +..++..++..+...|+.++ +.++++++.+.+| .++.+
T Consensus       231 -------p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P-~~~~~  271 (291)
T 3mkr_A          231 -------SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR-SHPFI  271 (291)
T ss_dssp             -------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred             -------CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-CChHH
Confidence                   4 57778888888888888765 5678888888777 55443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.84  E-value=9.3e-20  Score=152.14  Aligned_cols=286  Identities=11%  Similarity=0.082  Sum_probs=141.9

Q ss_pred             hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 018582            2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEE   81 (353)
Q Consensus         2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~   81 (353)
                      +++|.++++++..      ..+|..|..++.+.|++++|++.|.+.      +|..+|..++.++...|++++|...++.
T Consensus        19 ld~A~~fae~~~~------~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~   86 (449)
T 1b89_A           19 LDRAYEFAERCNE------PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM   86 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHhCCC------hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            5778888888833      359999999999999999999999652      6788999999999999999999998887


Q ss_pred             HHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCC
Q 018582           82 MKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTA  161 (353)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  161 (353)
                      .++.   .++..+.+.++.+|.+.|+++++.++++       .|+..+|..+...|...|++++|..+|..+        
T Consensus        87 ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------  148 (449)
T 1b89_A           87 ARKK---ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------  148 (449)
T ss_dssp             -------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--------
T ss_pred             HHHh---CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence            7773   4557788899999999999999998885       267779999999999999999999999976        


Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 018582          162 NISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDY  241 (353)
Q Consensus       162 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~  241 (353)
                       ..|..++.++.+.|++++|.+.+.++      .++.+|..++.+|...|+++.|......+.     .++.-...++..
T Consensus       149 -~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~~  216 (449)
T 1b89_A          149 -SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINY  216 (449)
T ss_dssp             -TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHHH
T ss_pred             -hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHHH
Confidence             47899999999999999999999988      278999999999999999999976655432     234445578999


Q ss_pred             HHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHh-cCCCC------ChhhhHHH
Q 018582          242 YLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKK-AVDDL------GVEVFEPL  314 (353)
Q Consensus       242 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~------~~~~~~~l  314 (353)
                      |.+.|.+++|..+++..+...       .-...+|+-+..+|++- +++...+.++.... .+++|      +...|.-+
T Consensus       217 Yek~G~~eEai~lLe~aL~le-------~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~  288 (449)
T 1b89_A          217 YQDRGYFEELITMLEAALGLE-------RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAEL  288 (449)
T ss_dssp             HHHTTCHHHHHHHHHHHTTST-------TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHH
T ss_pred             HHHCCCHHHHHHHHHHHhCCc-------HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence            999999999999999988764       14577888888788765 34444444443322 33312      47789999


Q ss_pred             HHHHHHcCCChHHHHHHHHhCCC
Q 018582          315 IRTYAAAGRTSPVMLRRLKMEKV  337 (353)
Q Consensus       315 ~~~~~~~g~~~~~~~~~m~~~~~  337 (353)
                      +-.|.+.+++..++...|.....
T Consensus       289 ~~ly~~~~e~d~A~~tm~~h~~~  311 (449)
T 1b89_A          289 VFLYDKYEEYDNAIITMMNHPTD  311 (449)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSTTT
T ss_pred             HHHHHhhchHHHHHHHHHhCChh
Confidence            99999999999988877766544

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.84  E-value=4.7e-18  Score=138.40  Aligned_cols=258  Identities=10%  Similarity=0.061  Sum_probs=206.9

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHcCCCCCcH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcc
Q 018582           63 MRALAAVNDISGAERVIEEMKRDGRVAADW--TTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQT  140 (353)
Q Consensus        63 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  140 (353)
                      ++-....|++..|+..++.....   .|+.  .....+.++|...|+++.|+..++..    -+|+..++..+...+...
T Consensus         6 ~~~~~~~g~y~~ai~~~~~~~~~---~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~   78 (291)
T 3mkr_A            6 VKNAFYIGSYQQCINEAQRVKPS---SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASH   78 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCCC---SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHHHHHHhcccC---CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCC
Confidence            34556789999999998876553   3443  35567889999999999999877552    345778889999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHH
Q 018582          141 GNLSEVYRIWRSLRLAFPNT-ANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEEL  219 (353)
Q Consensus       141 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  219 (353)
                      ++.++|++.++++...+..| +...+..+..++...|++++|.+.+++      +.+...+..++..|.+.|++++|.+.
T Consensus        79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~  152 (291)
T 3mkr_A           79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE  152 (291)
T ss_dssp             TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            99999999999998876445 445667777999999999999999987      45788999999999999999999999


Q ss_pred             HHHHHhcCCCCChhhH---HHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHH
Q 018582          220 KERARRRGADPNAKTW---EIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFL  296 (353)
Q Consensus       220 ~~~~~~~~~~p~~~~~---~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  296 (353)
                      |+++.+..  |+....   ..++..+...|++++|..+|+++.+..       +.+...++.+..++.+.|++++|...+
T Consensus       153 l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-------p~~~~~~~~la~~~~~~g~~~eA~~~l  223 (291)
T 3mkr_A          153 LKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-------SPTLLLLNGQAACHMAQGRWEAAEGVL  223 (291)
T ss_dssp             HHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-------CCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999874  553222   223344456699999999999999985       156889999999999999999999999


Q ss_pred             HHHHhcCCCCChhhhHHHHHHHHHcCCChHHHHHHH-HhCCCccCHhH
Q 018582          297 EILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRL-KMEKVEVSEAS  343 (353)
Q Consensus       297 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m-~~~~~~p~~~~  343 (353)
                      +++.+..| .++.++..++..+...|+..+++.... +...+.|+...
T Consensus       224 ~~al~~~p-~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~  270 (291)
T 3mkr_A          224 QEALDKDS-GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF  270 (291)
T ss_dssp             HHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHhCC-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH
Confidence            99999998 899999999999999999765433222 22344666544

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.83  E-value=2.4e-20  Score=167.91  Aligned_cols=153  Identities=12%  Similarity=0.154  Sum_probs=126.1

Q ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHH
Q 018582           89 AADWTTFSNLASIYVEAGLFEKAERALKELE---NRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISY  165 (353)
Q Consensus        89 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  165 (353)
                      ..-..+|++||++|++.|++++|.++|++|.   ..|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||
T Consensus       124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY  203 (1134)
T 3spa_A          124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY  203 (1134)
T ss_dssp             CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence            3345689999999999999999999998875   4588999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCh-hHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC------hhhHHHH
Q 018582          166 LNMIQVLVNLKDL-PGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPN------AKTWEIF  238 (353)
Q Consensus       166 ~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~------~~~~~~l  238 (353)
                      +++|.++++.|+. ++|.++|++|.+.|+.||..+|+.++..+.+.    .+++..+++ ..+..|+      ..+...|
T Consensus       204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL  278 (1134)
T 3spa_A          204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLL  278 (1134)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTT
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHH
Confidence            9999999999985 78999999999999999999999988765554    333333333 2334443      4555666


Q ss_pred             HHHHHccC
Q 018582          239 SDYYLRNG  246 (353)
Q Consensus       239 i~~~~~~~  246 (353)
                      .+.|.+.+
T Consensus       279 ~dl~s~d~  286 (1134)
T 3spa_A          279 RDVYAKDG  286 (1134)
T ss_dssp             HHHHCCCS
T ss_pred             HHHHccCC
Confidence            67777655

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.83  E-value=1.8e-20  Score=168.72  Aligned_cols=157  Identities=8%  Similarity=-0.034  Sum_probs=128.3

Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHHH---HhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHH
Q 018582          126 DLSAYQFLITLYGQTGNLSEVYRIWRSLR---LAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNV  202 (353)
Q Consensus       126 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  202 (353)
                      -..+|+++|++|++.|+.++|.++|++|.   ..|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+||+
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt  205 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA  205 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence            35689999999999999999999998876   458999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCh-HHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHH
Q 018582          203 MIGAYAKEGRL-ENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMR  281 (353)
Q Consensus       203 li~~~~~~g~~-~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  281 (353)
                      ||.++++.|+. ++|.++|++|.+.|+.||..+|+.++.++.+    +.+++..+++ ..+.+|.....|...+...|.+
T Consensus       206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR----~~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d  280 (1134)
T 3spa_A          206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR----ATVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD  280 (1134)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH----HHHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH----HHHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence            99999999985 7899999999999999999999999876654    3455555555 3343332222222444455556


Q ss_pred             HHHhcC
Q 018582          282 HFEQEK  287 (353)
Q Consensus       282 ~~~~~~  287 (353)
                      .|.+.+
T Consensus       281 l~s~d~  286 (1134)
T 3spa_A          281 VYAKDG  286 (1134)
T ss_dssp             HHCCCS
T ss_pred             HHccCC
Confidence            666544

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.82  E-value=1.1e-17  Score=134.00  Aligned_cols=225  Identities=13%  Similarity=0.047  Sum_probs=138.4

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCC--C----HHHHH
Q 018582           58 TYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHR--D----LSAYQ  131 (353)
Q Consensus        58 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~~  131 (353)
                      .|..+...+...|++++|...|+++.+.  . .+..++..+..++...|++++|...+++.....+..  +    ..++.
T Consensus         7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~--~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   83 (258)
T 3uq3_A            7 KEKAEGNKFYKARQFDEAIEHYNKAWEL--H-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA   83 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--S-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHh--h-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence            3444555555555555555555555554  2 444555555555555566666665555554432211  1    35555


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC
Q 018582          132 FLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEG  211 (353)
Q Consensus       132 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  211 (353)
                      .+...+...|++++|.+.|++.....+  +.       ..+...|++++|...++++....+ .+...+..+...+...|
T Consensus        84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  153 (258)
T 3uq3_A           84 RIGNAYHKLGDLKKTIEYYQKSLTEHR--TA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTKS  153 (258)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCC--CH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhcCc--hh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHhc
Confidence            666666666666666666666655432  21       234455666677777776666542 25566667777777777


Q ss_pred             ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhh
Q 018582          212 RLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDG  291 (353)
Q Consensus       212 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  291 (353)
                      ++++|...+++..+.. +.+..++..+...+...|++++|++.+++..+...       .+...+..+..++.+.|++++
T Consensus       154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-------~~~~~~~~l~~~~~~~g~~~~  225 (258)
T 3uq3_A          154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-------NFVRAYIRKATAQIAVKEYAS  225 (258)
T ss_dssp             CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHH
T ss_pred             CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-------HHHHHHHHHHHHHHHHhhHHH
Confidence            7777777777776653 22566677777777777777777777777777651       236667777777777777777


Q ss_pred             HHHHHHHHHhcC
Q 018582          292 AEGFLEILKKAV  303 (353)
Q Consensus       292 a~~~~~~~~~~~  303 (353)
                      |...+++..+..
T Consensus       226 A~~~~~~a~~~~  237 (258)
T 3uq3_A          226 ALETLDAARTKD  237 (258)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC
Confidence            777777777655

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.80  E-value=1.8e-17  Score=129.14  Aligned_cols=199  Identities=18%  Similarity=0.111  Sum_probs=104.1

Q ss_pred             CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHH
Q 018582           54 PDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFL  133 (353)
Q Consensus        54 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  133 (353)
                      ++...+..+...+.+.|++++|...|++..+.  .+.+...+..+..++.+.|++++|+..+++..+..+. +..++..+
T Consensus         3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~l   79 (217)
T 2pl2_A            3 TAEQNPLRLGVQLYALGRYDAALTLFERALKE--NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVL   79 (217)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence            34444555555555555555555555555543  3444455555555555555555555555555544332 44455555


Q ss_pred             HHHHHcc-----------CCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHH
Q 018582          134 ITLYGQT-----------GNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNV  202 (353)
Q Consensus       134 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  202 (353)
                      ...+...           |++++|+..|++..+..+. +...+..+..++...|++++|...|++..+..  .+...+..
T Consensus        80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~  156 (217)
T 2pl2_A           80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA  156 (217)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred             HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence            5555555           6666666666666555432 44555666666666666666666666666555  35566666


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHH
Q 018582          203 MIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAI  259 (353)
Q Consensus       203 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~  259 (353)
                      +..+|...|++++|...|++..+..+ .+...+..+...+...|++++|++.+++..
T Consensus       157 la~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          157 LAELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC---------------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            66666666666666666666665432 245556666666666666666666666544

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.79  E-value=4.8e-17  Score=126.76  Aligned_cols=201  Identities=12%  Similarity=0.039  Sum_probs=166.7

Q ss_pred             CCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHH
Q 018582           18 GFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSN   97 (353)
Q Consensus        18 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   97 (353)
                      |++...+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|...|++..+.  .+.+...+..
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~   78 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMV   78 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHH
Confidence            5788899999999999999999999999998863 446678889999999999999999999999997  4667889999


Q ss_pred             HHHHHHhc-----------CCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHH
Q 018582           98 LASIYVEA-----------GLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYL  166 (353)
Q Consensus        98 l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  166 (353)
                      +..++.+.           |++++|+..+++..+..+. +..++..+...+...|++++|+..|++..+..  .+...+.
T Consensus        79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~  155 (217)
T 2pl2_A           79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS  155 (217)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred             HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence            99999999           9999999999999887655 78899999999999999999999999998887  6788899


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 018582          167 NMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARR  225 (353)
Q Consensus       167 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  225 (353)
                      .+..++...|++++|...|++..+..+. +...+..+...+...|++++|...|++...
T Consensus       156 ~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  213 (217)
T 2pl2_A          156 ALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEHH  213 (217)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC----------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence            9999999999999999999999987644 788899999999999999999999987653

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.79  E-value=7.5e-19  Score=146.71  Aligned_cols=241  Identities=12%  Similarity=0.137  Sum_probs=112.1

Q ss_pred             hcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 018582           33 KTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAE  112 (353)
Q Consensus        33 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  112 (353)
                      +.|++++|.+.++++      +++.+|..++.++.+.|++++|.+.|.+       .+|..+|..++..+...|++++|+
T Consensus        15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfik-------a~D~~~y~~V~~~ae~~g~~EeAi   81 (449)
T 1b89_A           15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEELV   81 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHc-------CCCHHHHHHHHHHHHhCCCHHHHH
Confidence            567899999999988      2345999999999999999999999954       256668899999999999999999


Q ss_pred             HHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 018582          113 RALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGC  192 (353)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  192 (353)
                      +.++...+.  .+++.+.+.++.+|.+.|+++++.++++       .|+..+|..++..|...|++++|...|..+    
T Consensus        82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----  148 (449)
T 1b89_A           82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----  148 (449)
T ss_dssp             -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred             HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence            988877663  3457789999999999999999998885       367789999999999999999999999976    


Q ss_pred             CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc
Q 018582          193 ATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS  272 (353)
Q Consensus       193 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  272 (353)
                           ..|..++.++.+.|++++|.+.+.++      .++.+|..++.+|...|+++.|......+.           .+
T Consensus       149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----------~~  206 (449)
T 1b89_A          149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----------VH  206 (449)
T ss_dssp             -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----------TC
T ss_pred             -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----------hC
Confidence                 37899999999999999999999998      278999999999999999999965544322           33


Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcC
Q 018582          273 SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAG  322 (353)
Q Consensus       273 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  322 (353)
                      +.-...++..|.+.|.+++|..+++....... -....|+-|..+|++-.
T Consensus       207 ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~-ah~~~ftel~il~~ky~  255 (449)
T 1b89_A          207 ADELEELINYYQDRGYFEELITMLEAALGLER-AHMGMFTELAILYSKFK  255 (449)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTT-CCHHHHHHHHHHHHTTC
T ss_pred             HhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHHhcC
Confidence            33455788999999999999999999998885 88999999999888754

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.79  E-value=8.4e-17  Score=128.77  Aligned_cols=240  Identities=10%  Similarity=-0.018  Sum_probs=198.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC--CC----hhHH
Q 018582           92 WTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN--TA----NISY  165 (353)
Q Consensus        92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~  165 (353)
                      ...+..+...+...|++++|...|++..+..  .+..++..+...+...|++++|++.+++..+..+.  ++    ..++
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   82 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF   82 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence            4577889999999999999999999998877  68889999999999999999999999998775432  12    4788


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHcc
Q 018582          166 LNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRN  245 (353)
Q Consensus       166 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~  245 (353)
                      ..+..++...|++++|...+++..+...  +       ...+...|++++|...++++.... +.+...+..+...+...
T Consensus        83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~-------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  152 (258)
T 3uq3_A           83 ARIGNAYHKLGDLKKTIEYYQKSLTEHR--T-------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK  152 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCC--C-------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcCc--h-------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence            8999999999999999999999998653  3       245677789999999999998763 22567788899999999


Q ss_pred             CChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCCh
Q 018582          246 GDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTS  325 (353)
Q Consensus       246 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  325 (353)
                      |++++|.+.++++.+...       .+..++..+..++.+.|++++|...++++.+..+ .+..+|..+..+|.+.|+..
T Consensus       153 ~~~~~A~~~~~~a~~~~~-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~  224 (258)
T 3uq3_A          153 SDWPNAVKAYTEMIKRAP-------EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYA  224 (258)
T ss_dssp             TCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred             cCHHHHHHHHHHHHhcCc-------ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHH
Confidence            999999999999999861       3578899999999999999999999999999988 78999999999999999966


Q ss_pred             HHHHHHHHhCCCc------cCHhHHHHHHHHh
Q 018582          326 PVMLRRLKMEKVE------VSEASKKLLEAIC  351 (353)
Q Consensus       326 ~~~~~~m~~~~~~------p~~~~~~~l~~~c  351 (353)
                      .++...-+...+.      |+.......+.-|
T Consensus       225 ~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          225 SALETLDAARTKDAEVNNGSSAREIDQLYYKA  256 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence            5553222222233      7766655555444

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.79  E-value=1.6e-16  Score=133.81  Aligned_cols=250  Identities=12%  Similarity=0.077  Sum_probs=215.0

Q ss_pred             chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 018582           57 YTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGL-FEKAERALKELENRNAHRDLSAYQFLIT  135 (353)
Q Consensus        57 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~  135 (353)
                      ..|..+...+...|++++|+..++++++.  .+-+..+|+.+..++.+.|+ +++|+..|++.....+. +..+|..+..
T Consensus        98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~  174 (382)
T 2h6f_A           98 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV  174 (382)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence            46778888899999999999999999997  57778899999999999997 99999999999988766 7889999999


Q ss_pred             HHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh-cCChH
Q 018582          136 LYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAK-EGRLE  214 (353)
Q Consensus       136 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~  214 (353)
                      .+...|++++|+..|+++.+..+. +...|..+..++...|++++|...++++++..+. +...|+.+..++.. .|..+
T Consensus       175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~  252 (382)
T 2h6f_A          175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND  252 (382)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred             HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence            999999999999999999988763 7789999999999999999999999999998755 88999999999999 66657


Q ss_pred             HH-----HHHHHHHHhcCCCCChhhHHHHHHHHHccC--ChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcC
Q 018582          215 NA-----EELKERARRRGADPNAKTWEIFSDYYLRNG--DMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEK  287 (353)
Q Consensus       215 ~a-----~~~~~~~~~~~~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  287 (353)
                      +|     +..|++..+.... +...|..+...+...|  ++++|++.+.++ +..       ..+...+..+...|.+.|
T Consensus       253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-------p~~~~al~~La~~~~~~~  323 (382)
T 2h6f_A          253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-------HSSPYLIAFLVDIYEDML  323 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-------CCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-------CCCHHHHHHHHHHHHHHh
Confidence            77     5888888876432 5678888888898888  689999999888 443       145788889999998874


Q ss_pred             --------C-hhhHHHHHHHH-HhcCCCCChhhhHHHHHHHHHc
Q 018582          288 --------D-VDGAEGFLEIL-KKAVDDLGVEVFEPLIRTYAAA  321 (353)
Q Consensus       288 --------~-~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~  321 (353)
                              + .++|.++++++ .+.+| .....|..+...+...
T Consensus       324 ~~~~~~~~~~~~~A~~~~~~l~~~~DP-~r~~~w~~~~~~l~~~  366 (382)
T 2h6f_A          324 ENQCDNKEDILNKALELCEILAKEKDT-IRKEYWRYIGRSLQSK  366 (382)
T ss_dssp             HTTCSSHHHHHHHHHHHHHHHHHTTCG-GGHHHHHHHHHHHHHH
T ss_pred             cccccchHHHHHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHH
Confidence                    2 58999999999 88888 7888899888877653

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.79  E-value=2.4e-16  Score=127.28  Aligned_cols=254  Identities=11%  Similarity=0.012  Sum_probs=181.9

Q ss_pred             chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCC--CHHHHHHHH
Q 018582           57 YTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHR--DLSAYQFLI  134 (353)
Q Consensus        57 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~  134 (353)
                      ..+......+...|++++|...|+++.+.  .+.+...+..+..+|...|++++|...+++.......+  ...+|..+.
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg   81 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEAK--KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG   81 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHHT--TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence            34555666677777777777777777765  34445566777777777777777777777776632222  233477777


Q ss_pred             HHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChH
Q 018582          135 TLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLE  214 (353)
Q Consensus       135 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  214 (353)
                      ..+...|++++|++.|++..+..+ .+..++..+...+...|++++|...+++..+..+ .+...+..+...+...++++
T Consensus        82 ~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~  159 (272)
T 3u4t_A           82 KILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT-TDPKVFYELGQAYYYNKEYV  159 (272)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC-CCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC-CcHHHHHHHHHHHHHHHHHH
Confidence            888888888888888888777654 3556788888888888888888888888877643 36677777773344455999


Q ss_pred             HHHHHHHHHHhcCCCCChhhHHHHHHHHHccCC---hHHHHHHHHHHHHcCCCCCCCCccc------HHHHHHHHHHHHh
Q 018582          215 NAEELKERARRRGADPNAKTWEIFSDYYLRNGD---MKLAVDCLEKAIDTGRGDGGKWVPS------SETIRTFMRHFEQ  285 (353)
Q Consensus       215 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~  285 (353)
                      +|...|+++.+... .+...+..+...+...|+   +++|...+++..+....     .|+      ..++..+...|.+
T Consensus       160 ~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~  233 (272)
T 3u4t_A          160 KADSSFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAP-----GGAKYKDELIEANEYIAYYYTI  233 (272)
T ss_dssp             HHHHHHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGG-----GGGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhc-----ccccchHHHHHHHHHHHHHHHH
Confidence            99999999887632 246677777888887787   88899999888776311     133      2578888999999


Q ss_pred             cCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHc
Q 018582          286 EKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAA  321 (353)
Q Consensus       286 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  321 (353)
                      .|++++|...++++.+..| .+...+..+.......
T Consensus       234 ~~~~~~A~~~~~~al~~~p-~~~~a~~~l~~~~~~~  268 (272)
T 3u4t_A          234 NRDKVKADAAWKNILALDP-TNKKAIDGLKMKLEHH  268 (272)
T ss_dssp             TTCHHHHHHHHHHHHHHCT-TCHHHHHHHC------
T ss_pred             cCCHHHHHHHHHHHHhcCc-cHHHHHHHhhhhhccc
Confidence            9999999999999999998 7888887776655443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.79  E-value=1.4e-14  Score=127.25  Aligned_cols=288  Identities=13%  Similarity=0.067  Sum_probs=147.7

Q ss_pred             hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHh----cCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHh----cCChh
Q 018582            2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAK----TGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAA----VNDIS   73 (353)
Q Consensus         2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~   73 (353)
                      +++|++.|+...+.|   ++..+..|...|..    .+++++|.+.|++..+.|   +...+..+...+..    .++++
T Consensus        59 ~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~  132 (490)
T 2xm6_A           59 LTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKA  132 (490)
T ss_dssp             HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred             HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence            345666666555543   34455555555555    566666666666655543   34444455555555    45566


Q ss_pred             HHHHHHHHHHHcCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHc----cCCHHH
Q 018582           74 GAERVIEEMKRDGRVAADWTTFSNLASIYVE----AGLFEKAERALKELENRNAHRDLSAYQFLITLYGQ----TGNLSE  145 (353)
Q Consensus        74 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~  145 (353)
                      +|...|++..+.|    +...+..|...|..    .+++++|.+.|++..+.+   +..++..+...|..    .+++++
T Consensus       133 ~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~  205 (490)
T 2xm6_A          133 ESVKWFRLAAEQG----RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAI  205 (490)
T ss_dssp             HHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred             HHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHH
Confidence            6666666555543    23344445555544    455555555555554432   34444445444444    455555


Q ss_pred             HHHHHHHHHHhCCC---------------------------------CChhHHHHHHHHHHh----cCChhHHHHHHHHH
Q 018582          146 VYRIWRSLRLAFPN---------------------------------TANISYLNMIQVLVN----LKDLPGAEKCFKEW  188 (353)
Q Consensus       146 a~~~~~~~~~~~~~---------------------------------~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~  188 (353)
                      |.+.|++..+.+..                                 .+...+..+...+..    .++.++|...|++.
T Consensus       206 A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a  285 (490)
T 2xm6_A          206 SAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKS  285 (490)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Confidence            55555544433210                                 122233334444444    44555555555554


Q ss_pred             HhcCCCCcHHHHHHHHHHHHhc-----CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccC---ChHHHHHHHHHHHH
Q 018582          189 ESGCATYDIRVTNVMIGAYAKE-----GRLENAEELKERARRRGADPNAKTWEIFSDYYLRNG---DMKLAVDCLEKAID  260 (353)
Q Consensus       189 ~~~~~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~  260 (353)
                      .+.+   +...+..+...|...     +++++|...|++..+.|   +...+..+...|...|   ++++|+++|++..+
T Consensus       286 ~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~  359 (490)
T 2xm6_A          286 AEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA  359 (490)
T ss_dssp             HTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred             HHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH
Confidence            4433   233444444444444     55555555555555443   2334444444444433   45556666666555


Q ss_pred             cCCCCCCCCcccHHHHHHHHHHHHh----cCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHH
Q 018582          261 TGRGDGGKWVPSSETIRTFMRHFEQ----EKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAA  320 (353)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  320 (353)
                      .+         +...+..+...|..    .+++++|...|++..+.+   ++..+..|...|.+
T Consensus       360 ~~---------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~  411 (490)
T 2xm6_A          360 KG---------EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYY  411 (490)
T ss_dssp             TT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred             CC---------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHc
Confidence            43         34455556666665    566677777776666544   35566666666666

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.78  E-value=3.2e-14  Score=124.89  Aligned_cols=284  Identities=12%  Similarity=0.001  Sum_probs=218.4

Q ss_pred             HHHHHHHHHhcCCCCCchhHHHHHHHHHh----cCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHh----cCChhHHH
Q 018582            5 AEALLEKMKELNLGFSSMPFNSLMTLYAK----TGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAA----VNDISGAE   76 (353)
Q Consensus         5 A~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~   76 (353)
                      +++.+....+.   .++.++..|...|..    .+++++|++.|++..+.|   +...+..+...+..    .+++++|.
T Consensus        26 ~~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~   99 (490)
T 2xm6_A           26 NLEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV   99 (490)
T ss_dssp             CHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred             HHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence            34555555554   477888888888988    899999999999998865   66788888888988    89999999


Q ss_pred             HHHHHHHHcCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHc----cCCHHHHHH
Q 018582           77 RVIEEMKRDGRVAADWTTFSNLASIYVE----AGLFEKAERALKELENRNAHRDLSAYQFLITLYGQ----TGNLSEVYR  148 (353)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~  148 (353)
                      ..|++..+.|    +...+..|...|..    .+++++|...|++..+.+   +..++..+...|..    .+++++|++
T Consensus       100 ~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~  172 (490)
T 2xm6_A          100 IWYKKAALKG----LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMARE  172 (490)
T ss_dssp             HHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred             HHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence            9999998864    45666778888988    889999999999998764   66788888888887    889999999


Q ss_pred             HHHHHHHhCCCCChhHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh----cCChHHHHHHH
Q 018582          149 IWRSLRLAFPNTANISYLNMIQVLVN----LKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAK----EGRLENAEELK  220 (353)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~  220 (353)
                      .|++..+.+   +...+..+...|..    .++.++|.+.|++..+.+   +...+..+...|..    .+++++|...|
T Consensus       173 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~  246 (490)
T 2xm6_A          173 WYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLF  246 (490)
T ss_dssp             HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred             HHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence            999988764   56778888888887    889999999999988765   45667777777776    67888888888


Q ss_pred             HHHHhcCCCCChhhHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhc-----CChhh
Q 018582          221 ERARRRGADPNAKTWEIFSDYYLR----NGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQE-----KDVDG  291 (353)
Q Consensus       221 ~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~  291 (353)
                      ++..+.|   +...+..+...|..    .+++++|+++|++..+.+         +...+..+...|...     +++++
T Consensus       247 ~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---------~~~a~~~Lg~~y~~~~~g~~~~~~~  314 (490)
T 2xm6_A          247 SQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---------NSDGQYYLAHLYDKGAEGVAKNREQ  314 (490)
T ss_dssp             HHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---------CHHHHHHHHHHHHHCBTTBCCCHHH
T ss_pred             HHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHcCCCCCcCCHHH
Confidence            8877654   44566666666666    677888888888777654         334555566666665     67777


Q ss_pred             HHHHHHHHHhcCCCCChhhhHHHHHHHHHcC
Q 018582          292 AEGFLEILKKAVDDLGVEVFEPLIRTYAAAG  322 (353)
Q Consensus       292 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  322 (353)
                      |...+++..+.+.   ...+..|...|.+.|
T Consensus       315 A~~~~~~a~~~~~---~~a~~~lg~~y~~~g  342 (490)
T 2xm6_A          315 AISWYTKSAEQGD---ATAQANLGAIYFRLG  342 (490)
T ss_dssp             HHHHHHHHHHTTC---HHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHhcCC---HHHHHHHHHHHHhCC
Confidence            7777777666543   445566666665544

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.77  E-value=4.5e-15  Score=119.98  Aligned_cols=222  Identities=13%  Similarity=0.011  Sum_probs=116.4

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHccCCCCHHHHHHH
Q 018582           58 TYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVE----AGLFEKAERALKELENRNAHRDLSAYQFL  133 (353)
Q Consensus        58 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  133 (353)
                      ++..+...+...|++++|...|++..+.+    +...+..+...|..    .+++++|...|++..+.+   +..++..+
T Consensus         8 a~~~lg~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l   80 (273)
T 1ouv_A            8 ELVGLGAKSYKEKDFTQAKKYFEKACDLK----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL   80 (273)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence            34444444445555555555555544421    22334444455555    555555555555554432   44445555


Q ss_pred             HHHHHc----cCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 018582          134 ITLYGQ----TGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVN----LKDLPGAEKCFKEWESGCATYDIRVTNVMIG  205 (353)
Q Consensus       134 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~  205 (353)
                      ...|..    .+++++|++.|++..+.+   +...+..+...|..    .+++++|...+++..+.+   +...+..+..
T Consensus        81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~  154 (273)
T 1ouv_A           81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS  154 (273)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred             HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence            555555    555555555555554432   33445555555555    555555555555555543   3344445555


Q ss_pred             HHHh----cCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCCCCcccHHHHH
Q 018582          206 AYAK----EGRLENAEELKERARRRGADPNAKTWEIFSDYYLR----NGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIR  277 (353)
Q Consensus       206 ~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (353)
                      .|..    .+++++|...|++..+.+   +...+..+...|..    .+++++|++.+++..+.+        | ...+.
T Consensus       155 ~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------~-~~a~~  222 (273)
T 1ouv_A          155 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--------N-GGGCF  222 (273)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--------C-HHHHH
T ss_pred             HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC--------C-HHHHH
Confidence            5555    556666666666555542   34455555555555    566666666666665554        2 44455


Q ss_pred             HHHHHHHh----cCChhhHHHHHHHHHhcCC
Q 018582          278 TFMRHFEQ----EKDVDGAEGFLEILKKAVD  304 (353)
Q Consensus       278 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~  304 (353)
                      .+...|..    .+++++|.+.+++..+.++
T Consensus       223 ~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~  253 (273)
T 1ouv_A          223 NLGAMQYNGEGVTRNEKQAIENFKKGCKLGA  253 (273)
T ss_dssp             HHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             HHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence            55555555    5666666666666665554

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.77  E-value=1.1e-15  Score=122.01  Aligned_cols=202  Identities=11%  Similarity=-0.020  Sum_probs=154.5

Q ss_pred             cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 018582           56 SYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLIT  135 (353)
Q Consensus        56 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  135 (353)
                      ...+..+...+...|++++|...|+++.+.  .+.+..++..+...+...|++++|.+.++++.+..+. +...+..+..
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~  113 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI--DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGG  113 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHH
Confidence            345667777778888888888888888775  4556777778888888888888888888887766543 6677788888


Q ss_pred             HHHccCCHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChH
Q 018582          136 LYGQTGNLSEVYRIWRSLRLAFPNT-ANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLE  214 (353)
Q Consensus       136 ~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  214 (353)
                      .+...|++++|.+.++++...+..| +...+..+..++...|++++|...+++..+..+. +...+..+...|...|+++
T Consensus       114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~  192 (252)
T 2ho1_A          114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYV  192 (252)
T ss_dssp             HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHH
Confidence            8888888888888888876622223 4456777778888888888888888888776533 6777888888888888888


Q ss_pred             HHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582          215 NAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG  262 (353)
Q Consensus       215 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  262 (353)
                      +|...++++.+.. +.+...+..+...+...|++++|.++++++.+..
T Consensus       193 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~  239 (252)
T 2ho1_A          193 PARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY  239 (252)
T ss_dssp             HHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence            8888888887653 3356677777888888888888888888888876

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.77  E-value=1e-14  Score=129.36  Aligned_cols=319  Identities=11%  Similarity=0.050  Sum_probs=180.0

Q ss_pred             hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHH-HhcCChhHHHH---
Q 018582            2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRAL-AAVNDISGAER---   77 (353)
Q Consensus         2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~~~~~~a~~---   77 (353)
                      +++|+.+|+.+.+..+ .+...|..++..+.+.|++++|..+|+++...  .|+...|...+... ...|+.+.|.+   
T Consensus        28 ~~~a~~~~e~al~~~P-~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~~~~~~~~a~~~~~  104 (530)
T 2ooe_A           28 IDKARKTYERLVAQFP-SSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRETKGKLPSYKEKMA  104 (530)
T ss_dssp             HHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHHHTTTSTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHccchhhHHHHHH
Confidence            5788888888887652 46677888888888889999999999888875  36666666655422 34466655544   


Q ss_pred             -HHHHHHHc-CCCCCcHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHccCCCC-HHHHH--------------
Q 018582           78 -VIEEMKRD-GRVAADWTTFSNLASIYVE---------AGLFEKAERALKELENRNAHRD-LSAYQ--------------  131 (353)
Q Consensus        78 -~~~~~~~~-~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~-~~~~~--------------  131 (353)
                       +|+..... |..+++...|...+....+         .|+++.|..+|++.... +..+ ...|.              
T Consensus       105 ~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~-P~~~~~~~~~~~~~~e~~~~~~~~  183 (530)
T 2ooe_A          105 QAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN-PMINIEQLWRDYNKYEEGINIHLA  183 (530)
T ss_dssp             HHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS-CCTTHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc-hhhhHHHHHHHHHHHHHhhchhHH
Confidence             55555442 3122345555555555443         45666666666665541 1111 11111              


Q ss_pred             ---------------------------------------------------HHHHHHHcc----CCH----HHHHHHHHH
Q 018582          132 ---------------------------------------------------FLITLYGQT----GNL----SEVYRIWRS  152 (353)
Q Consensus       132 ---------------------------------------------------~l~~~~~~~----~~~----~~a~~~~~~  152 (353)
                                                                         ..+......    ++.    ..+..+|++
T Consensus       184 ~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~  263 (530)
T 2ooe_A          184 KKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQ  263 (530)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHH
Confidence                                                               111000000    011    133444555


Q ss_pred             HHHhCCCCChhHHHHHHHHHHh-------cCChh-------HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHH
Q 018582          153 LRLAFPNTANISYLNMIQVLVN-------LKDLP-------GAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEE  218 (353)
Q Consensus       153 ~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  218 (353)
                      .....+ .+...|...+..+.+       .|+++       +|..++++..+.-.+.+...|..++..+.+.|++++|..
T Consensus       264 al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~  342 (530)
T 2ooe_A          264 CLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHS  342 (530)
T ss_dssp             HHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHH
Confidence            444322 244556666665554       56665       677777776652122356667777777777777777777


Q ss_pred             HHHHHHhcCCCCC-h-hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHH-HHhcCChhhHHHH
Q 018582          219 LKERARRRGADPN-A-KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRH-FEQEKDVDGAEGF  295 (353)
Q Consensus       219 ~~~~~~~~~~~p~-~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~  295 (353)
                      +|+++.+.  .|+ . ..|..++..+.+.|++++|.++|++..+...       .+...+...... +...|+.+.|..+
T Consensus       343 ~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-------~~~~~~~~~a~~~~~~~~~~~~A~~~  413 (530)
T 2ooe_A          343 IYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-------TRHHVYVTAALMEYYCSKDKSVAFKI  413 (530)
T ss_dssp             HHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-------CCTHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred             HHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-------CchHHHHHHHHHHHHHcCChhHHHHH
Confidence            77777664  333 2 3566666666666677777777777666531       122222222211 2346666777777


Q ss_pred             HHHHHhcCCCCChhhhHHHHHHHHHcCC--ChHHHHHHHHhC
Q 018582          296 LEILKKAVDDLGVEVFEPLIRTYAAAGR--TSPVMLRRLKME  335 (353)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~~~  335 (353)
                      |+...+..| .++..|..++..+.+.|+  .+..+++.....
T Consensus       414 ~e~al~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~  454 (530)
T 2ooe_A          414 FELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS  454 (530)
T ss_dssp             HHHHHHHHT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHCC-CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence            766666665 556666666666666666  344555554443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.76  E-value=1.3e-15  Score=119.16  Aligned_cols=203  Identities=12%  Similarity=-0.027  Sum_probs=126.1

Q ss_pred             cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 018582           56 SYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLIT  135 (353)
Q Consensus        56 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  135 (353)
                      ...+..+...+...|++++|...++++.+.  .+.+...+..+...+...|++++|...+++.....+. +..++..+..
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~   84 (225)
T 2vq2_A            8 SNIKTQLAMEYMRGQDYRQATASIEDALKS--DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGW   84 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence            344555556666666666666666666654  3444556666666666666666666666666554332 4556666666


Q ss_pred             HHHcc-CCHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCh
Q 018582          136 LYGQT-GNLSEVYRIWRSLRLAFPNT-ANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRL  213 (353)
Q Consensus       136 ~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  213 (353)
                      .+... |++++|...++++.+.+..| +...+..+..++...|++++|...++++.+..+. +...+..+...+...|++
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~  163 (225)
T 2vq2_A           85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQL  163 (225)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCH
T ss_pred             HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCH
Confidence            66666 66666666666665521112 2345666666666777777777777766655432 456666777777777777


Q ss_pred             HHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582          214 ENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG  262 (353)
Q Consensus       214 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  262 (353)
                      ++|...++++.+.....+...+..+...+...|+.+.|..+++.+.+..
T Consensus       164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  212 (225)
T 2vq2_A          164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF  212 (225)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence            7777777776655321355556666666677777777777777776654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.76  E-value=6.9e-16  Score=129.87  Aligned_cols=248  Identities=10%  Similarity=0.033  Sum_probs=209.2

Q ss_pred             chhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 018582           21 SMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVND-ISGAERVIEEMKRDGRVAADWTTFSNLA   99 (353)
Q Consensus        21 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~   99 (353)
                      ..+|+.+...+.+.|++++|++.|++..+.. +-+..+|+.+..++...|+ +++|+..|+++.+.  .+.+...|..+.
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--~P~~~~a~~~~g  173 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRR  173 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--CCCCHHHHHHHH
Confidence            4568888899999999999999999999853 3356688899999999996 99999999999997  577889999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh-cCCh
Q 018582          100 SIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVN-LKDL  178 (353)
Q Consensus       100 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~  178 (353)
                      .++...|++++|+..|+++....+. +..+|..+..++...|++++|+..|+++.+..+. +...|..+..++.. .|..
T Consensus       174 ~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~  251 (382)
T 2h6f_A          174 VLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYN  251 (382)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSC
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcc
Confidence            9999999999999999999988765 8899999999999999999999999999998763 77889999999999 6665


Q ss_pred             hHH-----HHHHHHHHhcCCCCcHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccC-----
Q 018582          179 PGA-----EKCFKEWESGCATYDIRVTNVMIGAYAKEG--RLENAEELKERARRRGADPNAKTWEIFSDYYLRNG-----  246 (353)
Q Consensus       179 ~~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~-----  246 (353)
                      ++|     ...+++.....+. +...|+.+...+...|  ++++|.+.+.++ +. -..+...+..+...|.+.|     
T Consensus       252 ~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~  328 (382)
T 2h6f_A          252 DRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCD  328 (382)
T ss_dssp             SHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred             hHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccccc
Confidence            888     5889998887655 7889999999999888  689999999988 43 2345678888888888864     


Q ss_pred             ----ChHHHHHHHHHH-HHcCCCCCCCCccc-HHHHHHHHHHHH
Q 018582          247 ----DMKLAVDCLEKA-IDTGRGDGGKWVPS-SETIRTFMRHFE  284 (353)
Q Consensus       247 ----~~~~a~~~~~~~-~~~~~~~~~~~~~~-~~~~~~l~~~~~  284 (353)
                          ..++|+++++++ .+..        |. ...|..+...+.
T Consensus       329 ~~~~~~~~A~~~~~~l~~~~D--------P~r~~~w~~~~~~l~  364 (382)
T 2h6f_A          329 NKEDILNKALELCEILAKEKD--------TIRKEYWRYIGRSLQ  364 (382)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTC--------GGGHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHhC--------chhHHHHHHHHHHHH
Confidence                358999999999 7765        65 456666655554

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.76  E-value=1.8e-15  Score=120.75  Aligned_cols=210  Identities=15%  Similarity=0.041  Sum_probs=179.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 018582           92 WTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQV  171 (353)
Q Consensus        92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  171 (353)
                      ...+..+...+...|++++|...|+++....+. +..++..+...+...|++++|.+.++++.+..+ .+...+..+...
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~  114 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF  114 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence            567788999999999999999999999876543 688899999999999999999999999988765 367788889999


Q ss_pred             HHhcCChhHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHH
Q 018582          172 LVNLKDLPGAEKCFKEWESGCATY-DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKL  250 (353)
Q Consensus       172 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~  250 (353)
                      +...|++++|.+.++++.+.+..| +...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus       115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~  193 (252)
T 2ho1_A          115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP  193 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence            999999999999999998732223 67788889999999999999999999998764 2357888899999999999999


Q ss_pred             HHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhH
Q 018582          251 AVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFE  312 (353)
Q Consensus       251 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  312 (353)
                      |.+.++++.+..       ..+...+..+...+...|++++|.+.++++.+..+ .+.....
T Consensus       194 A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~  247 (252)
T 2ho1_A          194 ARQYYDLFAQGG-------GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP-GSLEYQE  247 (252)
T ss_dssp             HHHHHHHHHTTS-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TSHHHHH
T ss_pred             HHHHHHHHHHhC-------cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CCHHHHH
Confidence            999999998865       14577788888999999999999999999998876 5554443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.76  E-value=9.9e-16  Score=123.67  Aligned_cols=237  Identities=14%  Similarity=0.055  Sum_probs=194.0

Q ss_pred             chhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc--HHHHHHH
Q 018582           21 SMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAAD--WTTFSNL   98 (353)
Q Consensus        21 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l   98 (353)
                      ...+......+...|++++|++.|++..+.. +.+...+..+..++...|++++|...+++..+.+ ..++  ...|..+
T Consensus         3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~l   80 (272)
T 3u4t_A            3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV-NATKAKSADFEYY   80 (272)
T ss_dssp             --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CTTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc-CchhHHHHHHHHH
Confidence            4556777888999999999999999999864 3455689999999999999999999999999843 2222  3458899


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 018582           99 ASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDL  178 (353)
Q Consensus        99 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  178 (353)
                      ...+...|++++|...|++..+..+. +..++..+...|...|++++|++.|++..+..+ .+...+..+...+...+++
T Consensus        81 g~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~  158 (272)
T 3u4t_A           81 GKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT-TDPKVFYELGQAYYYNKEY  158 (272)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC-CCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC-CcHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999887655 678999999999999999999999999877643 3556677777344455699


Q ss_pred             hHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhcC-CCCC------hhhHHHHHHHHHccCCh
Q 018582          179 PGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGR---LENAEELKERARRRG-ADPN------AKTWEIFSDYYLRNGDM  248 (353)
Q Consensus       179 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~-~~p~------~~~~~~li~~~~~~~~~  248 (353)
                      ++|.+.++++.+..+. +...+..+...+...|+   +++|...+++..+.. ..|+      ...|..+...|...|++
T Consensus       159 ~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  237 (272)
T 3u4t_A          159 VKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK  237 (272)
T ss_dssp             HHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence            9999999999987644 67788888889988888   888999998877531 1233      25778888999999999


Q ss_pred             HHHHHHHHHHHHcC
Q 018582          249 KLAVDCLEKAIDTG  262 (353)
Q Consensus       249 ~~a~~~~~~~~~~~  262 (353)
                      ++|.+.+++..+..
T Consensus       238 ~~A~~~~~~al~~~  251 (272)
T 3u4t_A          238 VKADAAWKNILALD  251 (272)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999999987

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.76  E-value=2e-15  Score=118.02  Aligned_cols=215  Identities=11%  Similarity=-0.002  Sum_probs=178.1

Q ss_pred             CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHH
Q 018582           88 VAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLN  167 (353)
Q Consensus        88 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  167 (353)
                      .+.+...+..+...+...|++++|...++++....+. +..++..+...+...|++++|.+.+++.....+ .+..++..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~   81 (225)
T 2vq2_A            4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNN   81 (225)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHH
Confidence            3455677888999999999999999999999876544 678899999999999999999999999988754 36678888


Q ss_pred             HHHHHHhc-CChhHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHcc
Q 018582          168 MIQVLVNL-KDLPGAEKCFKEWESGCATY-DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRN  245 (353)
Q Consensus       168 l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~  245 (353)
                      +...+... |++++|...++++.+.+..| +...+..+..++...|++++|...++++.+.. +.+...+..+...+...
T Consensus        82 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~  160 (225)
T 2vq2_A           82 YGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLA  160 (225)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHc
Confidence            99999999 99999999999998832222 46788889999999999999999999988764 23577888899999999


Q ss_pred             CChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhH
Q 018582          246 GDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFE  312 (353)
Q Consensus       246 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  312 (353)
                      |++++|.++++++.+....      .+...+..+...+...|+.+.|..+++.+.+..| .++....
T Consensus       161 ~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~  220 (225)
T 2vq2_A          161 GQLGDADYYFKKYQSRVEV------LQADDLLLGWKIAKALGNAQAAYEYEAQLQANFP-YSEELQT  220 (225)
T ss_dssp             TCHHHHHHHHHHHHHHHCS------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCC------CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHH
Confidence            9999999999999887510      3466777777888999999999999999887776 5555443

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.76  E-value=7.8e-15  Score=118.57  Aligned_cols=225  Identities=10%  Similarity=-0.046  Sum_probs=198.6

Q ss_pred             CCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCcHHH
Q 018582           19 FSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAA----VNDISGAERVIEEMKRDGRVAADWTT   94 (353)
Q Consensus        19 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~   94 (353)
                      -++.++..+...+...|++++|.+.|++..+.   .+..++..+...+..    .+++++|...|++..+.+    +...
T Consensus         4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a   76 (273)
T 1ouv_A            4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----YSNG   76 (273)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHH
T ss_pred             CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC----CHHH
Confidence            35678888999999999999999999999884   355778888899999    999999999999999863    6778


Q ss_pred             HHHHHHHHHh----cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHhCCCCChhHHH
Q 018582           95 FSNLASIYVE----AGLFEKAERALKELENRNAHRDLSAYQFLITLYGQ----TGNLSEVYRIWRSLRLAFPNTANISYL  166 (353)
Q Consensus        95 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~  166 (353)
                      +..+...|..    .+++++|...|++..+.+   +..++..+...|..    .+++++|++.|++..+.+   +...+.
T Consensus        77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~  150 (273)
T 1ouv_A           77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT  150 (273)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence            8889999999    999999999999998864   77889999999999    999999999999998865   456777


Q ss_pred             HHHHHHHh----cCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCChhhHHHH
Q 018582          167 NMIQVLVN----LKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAK----EGRLENAEELKERARRRGADPNAKTWEIF  238 (353)
Q Consensus       167 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l  238 (353)
                      .+...+..    .+++++|...+++..+.+   +...+..+...|..    .+++++|...|++..+.+   +...+..+
T Consensus       151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l  224 (273)
T 1ouv_A          151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNL  224 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHH
Confidence            88888888    999999999999998875   56788889999999    999999999999998874   36778888


Q ss_pred             HHHHHc----cCChHHHHHHHHHHHHcC
Q 018582          239 SDYYLR----NGDMKLAVDCLEKAIDTG  262 (353)
Q Consensus       239 i~~~~~----~~~~~~a~~~~~~~~~~~  262 (353)
                      ...|..    .+++++|.+.+++..+.+
T Consensus       225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          225 GAMQYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             HHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             HHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence            888988    999999999999999987

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.76  E-value=2.6e-16  Score=124.83  Aligned_cols=209  Identities=11%  Similarity=0.031  Sum_probs=94.1

Q ss_pred             chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 018582           57 YTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITL  136 (353)
Q Consensus        57 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  136 (353)
                      .+|..+...+...|++++|...|+++.+.  .+.+...+..+...+...|++++|...+++.....+. +..++..+...
T Consensus        24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~  100 (243)
T 2q7f_A           24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEE--NKEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGNV  100 (243)
T ss_dssp             ------------------CCTTHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHHH
Confidence            34444555555555555555555555553  3344455555555555555555555555555443322 34444445555


Q ss_pred             HHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHH
Q 018582          137 YGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENA  216 (353)
Q Consensus       137 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a  216 (353)
                      +...|++++|.+.++++.+..+ .                                   +...+..+...+...|++++|
T Consensus       101 ~~~~~~~~~A~~~~~~~~~~~~-~-----------------------------------~~~~~~~~a~~~~~~~~~~~A  144 (243)
T 2q7f_A          101 YVVKEMYKEAKDMFEKALRAGM-E-----------------------------------NGDLFYMLGTVLVKLEQPKLA  144 (243)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTC-C-----------------------------------SHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCC-C-----------------------------------CHHHHHHHHHHHHHhccHHHH
Confidence            5555555555555555444432 2                                   334444444455555555555


Q ss_pred             HHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHH
Q 018582          217 EELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFL  296 (353)
Q Consensus       217 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  296 (353)
                      ...++++.+.. +.+...+..+...+...|++++|.+.++++.+...       .+..++..+..++.+.|++++|...+
T Consensus       145 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~la~~~~~~~~~~~A~~~~  216 (243)
T 2q7f_A          145 LPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDP-------GHADAFYNAGVTYAYKENREKALEML  216 (243)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred             HHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-------ccHHHHHHHHHHHHHccCHHHHHHHH
Confidence            55555544432 12344444555555555555555555555555430       23445555555555555555555555


Q ss_pred             HHHHhcCCCCChhhhHH
Q 018582          297 EILKKAVDDLGVEVFEP  313 (353)
Q Consensus       297 ~~~~~~~~~~~~~~~~~  313 (353)
                      +++.+..+ .+..++..
T Consensus       217 ~~~~~~~p-~~~~~~~~  232 (243)
T 2q7f_A          217 DKAIDIQP-DHMLALHA  232 (243)
T ss_dssp             HHHHHHCT-TCHHHHHH
T ss_pred             HHHHccCc-chHHHHHH
Confidence            55555554 44444433

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.76  E-value=7.5e-15  Score=128.28  Aligned_cols=315  Identities=13%  Similarity=-0.019  Sum_probs=222.6

Q ss_pred             hHHHHHHHHHHHhc-------C-CCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHC-----C-CCC-CcchHHHHHHHH
Q 018582            2 TEKAEALLEKMKEL-------N-LGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKAS-----S-IMP-DSYTYNVWMRAL   66 (353)
Q Consensus         2 ~~~A~~~~~~m~~~-------~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~-~~p-~~~~~~~ll~~~   66 (353)
                      +++|++.|+...+.       . -+....+|+.+...|...|++++|...+++..+.     + ..+ ...++.....++
T Consensus        67 ~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~  146 (472)
T 4g1t_A           67 NEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTR  146 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHH
Confidence            46677766654321       1 1234568999999999999999999999887652     1 111 234555555555


Q ss_pred             Hhc--CChhHHHHHHHHHHHcCCCCCcHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHc--
Q 018582           67 AAV--NDISGAERVIEEMKRDGRVAADWTTFSNLASI---YVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQ--  139 (353)
Q Consensus        67 ~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--  139 (353)
                      ...  +++++|...|++..+.  .|.+...+..+..+   +...++.++|++.+++..+..+. +..++..+...+..  
T Consensus       147 ~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~~~~~~~l~~~~~~~~  223 (472)
T 4g1t_A          147 LKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-NQYLKVLLALKLHKMR  223 (472)
T ss_dssp             HHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-CHHHHHHHHHHHHHCC
T ss_pred             HHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-chHHHHHHHHHHHHHH
Confidence            543  5789999999999986  34555566555554   44567888999999988876554 56666666555544  


Q ss_pred             --cCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc-------
Q 018582          140 --TGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKE-------  210 (353)
Q Consensus       140 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-------  210 (353)
                        .|++++|.+.+++.....+ .+..++..+...+...|++++|...+++..+..+. +..++..+..+|...       
T Consensus       224 ~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~~~~~~~  301 (472)
T 4g1t_A          224 EEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKVFQVMNL  301 (472)
T ss_dssp             ------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHhhhH
Confidence              4678899999999888765 46678889999999999999999999999987654 677777777666432       


Q ss_pred             ------------CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccH--HHH
Q 018582          211 ------------GRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSS--ETI  276 (353)
Q Consensus       211 ------------g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~  276 (353)
                                  +.+++|...+++..+.. +.+..++..+...+...|++++|++.|++.++....      +..  ..+
T Consensus       302 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~------~~~~~~~~  374 (472)
T 4g1t_A          302 RENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT------PVAKQLLH  374 (472)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC------HHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC------ChHHHHHH
Confidence                        23567888888877764 335678889999999999999999999999987621      221  223


Q ss_pred             HHHHH-HHHhcCChhhHHHHHHHHHhc------------------------CCCCChhhhHHHHHHHHHcCCChHHHH
Q 018582          277 RTFMR-HFEQEKDVDGAEGFLEILKKA------------------------VDDLGVEVFEPLIRTYAAAGRTSPVML  329 (353)
Q Consensus       277 ~~l~~-~~~~~~~~~~a~~~~~~~~~~------------------------~~~~~~~~~~~l~~~~~~~g~~~~~~~  329 (353)
                      ..+.. .....|+.++|...+++..+.                        +| .++.+|..|...|...|+..+++-
T Consensus       375 ~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p-~~~~~~~~LG~~~~~~g~~~~A~~  451 (472)
T 4g1t_A          375 LRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNG-ADSEALHVLAFLQELNEKMQQADE  451 (472)
T ss_dssp             HHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC--CTTHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHH
Confidence            33333 245678899999888877654                        34 567889999999999999666553

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.75  E-value=4.7e-16  Score=123.28  Aligned_cols=203  Identities=14%  Similarity=0.068  Sum_probs=161.2

Q ss_pred             CCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHH
Q 018582           19 FSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNL   98 (353)
Q Consensus        19 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l   98 (353)
                      .....|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.  .+.+..++..+
T Consensus        21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l   97 (243)
T 2q7f_A           21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGA   97 (243)
T ss_dssp             ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcchHHHHHH
Confidence            456678888899999999999999999998853 446778888999999999999999999999987  46678889999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 018582           99 ASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDL  178 (353)
Q Consensus        99 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  178 (353)
                      ...+...|++++|...++++.+..+. +...+..+...+...|++++|...++++.+..+ .+...+..+...+...|++
T Consensus        98 a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~  175 (243)
T 2q7f_A           98 GNVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGML  175 (243)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCH
Confidence            99999999999999999999887544 778899999999999999999999999988755 4677888899999999999


Q ss_pred             hHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 018582          179 PGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRG  227 (353)
Q Consensus       179 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  227 (353)
                      ++|...++++.+..+ .+..++..+..+|...|++++|...++++.+..
T Consensus       176 ~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  223 (243)
T 2q7f_A          176 DEALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDIQ  223 (243)
T ss_dssp             HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence            999999999988764 367889999999999999999999999998763

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.75  E-value=1.8e-15  Score=122.26  Aligned_cols=225  Identities=14%  Similarity=0.093  Sum_probs=116.9

Q ss_pred             CChhHHHHHHHHHHHcCCC--CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHH
Q 018582           70 NDISGAERVIEEMKRDGRV--AADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVY  147 (353)
Q Consensus        70 ~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  147 (353)
                      |++++|...|+++.+....  +.+..++..+...+...|++++|...|++.....+. +..+|..+...+...|++++|.
T Consensus        19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~   97 (275)
T 1xnf_A           19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAY   97 (275)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred             chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHHH
Confidence            4455555555555553210  113344555555555556666666555555554332 4555555555555666666666


Q ss_pred             HHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 018582          148 RIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRG  227 (353)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~  227 (353)
                      +.|++..+..+ .+..++..+..++...|++++|...++++.+..+.  .......+..+...|++++|...+.+.....
T Consensus        98 ~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  174 (275)
T 1xnf_A           98 EAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN--DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS  174 (275)
T ss_dssp             HHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            66665555433 23445555555666666666666666665554322  1222223333344566666666665555442


Q ss_pred             CCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcc-cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 018582          228 ADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD  304 (353)
Q Consensus       228 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  304 (353)
                       +++...+ .++..+...++.++|.+.+.+.......    ..| +...+..+...+.+.|++++|...++++.+..|
T Consensus       175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  246 (275)
T 1xnf_A          175 -DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTS----LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV  246 (275)
T ss_dssp             -CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHH----HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             -CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhccccc----ccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence             2222222 3455555556666666666665544300    000 135566666666666666666666666666554

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.75  E-value=1.8e-16  Score=128.17  Aligned_cols=248  Identities=13%  Similarity=-0.035  Sum_probs=181.5

Q ss_pred             HhcCCcchHHHHHHHHHHCCC---CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCH
Q 018582           32 AKTGHPEKIPAIIQEMKASSI---MPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLF  108 (353)
Q Consensus        32 ~~~~~~~~a~~~~~~m~~~~~---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  108 (353)
                      ...|++++|++.|+++.+...   +.+..++..+...+...|++++|...|+++.+.  .+.+..++..+...+...|++
T Consensus        16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~   93 (275)
T 1xnf_A           16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNF   93 (275)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCH
T ss_pred             CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHccCH
Confidence            345778889999988887531   113557778888888999999999999998886  456788888899999999999


Q ss_pred             HHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 018582          109 EKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEW  188 (353)
Q Consensus       109 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  188 (353)
                      ++|...|++.....+. +..++..+...|...|++++|.+.|+++.+..+  +.......+..+...|++++|...+++.
T Consensus        94 ~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~  170 (275)
T 1xnf_A           94 DAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP--NDPFRSLWLYLAEQKLDEKQAKEVLKQH  170 (275)
T ss_dssp             HHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            9999999988876544 677888888899999999999999998887653  3334444455556778999999999887


Q ss_pred             HhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---ChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCC
Q 018582          189 ESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADP---NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGD  265 (353)
Q Consensus       189 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~  265 (353)
                      ..... ++...+. ++..+...++.++|...+.+..+.....   +...+..+...|...|++++|...|++..+..   
T Consensus       171 ~~~~~-~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---  245 (275)
T 1xnf_A          171 FEKSD-KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN---  245 (275)
T ss_dssp             HHHSC-CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---
T ss_pred             HhcCC-cchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---
Confidence            76543 3444444 6667777788888888888876542110   14677888888999999999999999998875   


Q ss_pred             CCCCcccHHHHHHHHHHHHhcCChhhHHHHH
Q 018582          266 GGKWVPSSETIRTFMRHFEQEKDVDGAEGFL  296 (353)
Q Consensus       266 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  296 (353)
                           |+..  .....++...|++++|.+.+
T Consensus       246 -----p~~~--~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          246 -----VHNF--VEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             -----CTTC--HHHHHHHHHHHHHHHC----
T ss_pred             -----chhH--HHHHHHHHHHHHHHhhHHHH
Confidence                 5321  22244566677777776655

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.72  E-value=3.9e-14  Score=123.75  Aligned_cols=311  Identities=11%  Similarity=-0.018  Sum_probs=220.0

Q ss_pred             CCchhHHHHHHHHHhcCCcchHHHHHHHHHHC-----C--CCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcC----
Q 018582           19 FSSMPFNSLMTLYAKTGHPEKIPAIIQEMKAS-----S--IMP-DSYTYNVWMRALAAVNDISGAERVIEEMKRDG----   86 (353)
Q Consensus        19 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~--~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----   86 (353)
                      .....||.|...+...|++++|++.|++..+.     +  ..| ...+|+.+..+|...|++++|...+++..+..    
T Consensus        49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~  128 (472)
T 4g1t_A           49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS  128 (472)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence            44667999999999999999999999987542     1  122 34578899999999999999999999876521    


Q ss_pred             -C-CCCcHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHccCCCCHHHHHHHHHH---HHccCCHHHHHHHHHHHHHhCCC
Q 018582           87 -R-VAADWTTFSNLASIYVEA--GLFEKAERALKELENRNAHRDLSAYQFLITL---YGQTGNLSEVYRIWRSLRLAFPN  159 (353)
Q Consensus        87 -~-~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~  159 (353)
                       . ......++..+..++...  +++++|...|++..+..+. ++..+..+...   +...++.++|++.+++..+..+ 
T Consensus       129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-  206 (472)
T 4g1t_A          129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-  206 (472)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-
T ss_pred             cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-
Confidence             0 122355666666666554  5799999999999887654 55566555544   4456788899999998887755 


Q ss_pred             CChhHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhH
Q 018582          160 TANISYLNMIQVLVN----LKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTW  235 (353)
Q Consensus       160 ~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~  235 (353)
                      .+..++..+...+..    .+++++|.+.+++.....+. +..++..+...|...|++++|...+++..+..+. +..++
T Consensus       207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~  284 (472)
T 4g1t_A          207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLH  284 (472)
T ss_dssp             SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred             cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHH
Confidence            355566656555544    46788999999998887644 7788999999999999999999999999886422 45566


Q ss_pred             HHHHHHHHc-------------------cCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHH
Q 018582          236 EIFSDYYLR-------------------NGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFL  296 (353)
Q Consensus       236 ~~li~~~~~-------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  296 (353)
                      ..+...|..                   .+.++.|...+++..+...       .+..++..+...+...|++++|...|
T Consensus       285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-------~~~~~~~~lg~~~~~~~~~~~A~~~~  357 (472)
T 4g1t_A          285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-------NLFRVCSILASLHALADQYEEAEYYF  357 (472)
T ss_dssp             HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-------TTCCCHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-------chhhhhhhHHHHHHHhccHHHHHHHH
Confidence            666555432                   1346778888888888761       34567888999999999999999999


Q ss_pred             HHHHhcCCCCCh--hhhHHHHHH-HHHcCCChHHHHHHHHhCCCccC
Q 018582          297 EILKKAVDDLGV--EVFEPLIRT-YAAAGRTSPVMLRRLKMEKVEVS  340 (353)
Q Consensus       297 ~~~~~~~~~~~~--~~~~~l~~~-~~~~g~~~~~~~~~m~~~~~~p~  340 (353)
                      ++..+..+.+..  ..+..+... +.+.|+...++-...+...+.|+
T Consensus       358 ~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~  404 (472)
T 4g1t_A          358 QKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK  404 (472)
T ss_dssp             HHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC
T ss_pred             HHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc
Confidence            999987763322  123333332 33456655555443344444444

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.72  E-value=7.7e-16  Score=131.64  Aligned_cols=301  Identities=14%  Similarity=0.040  Sum_probs=227.8

Q ss_pred             CCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCc-----chHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC
Q 018582           19 FSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDS-----YTYNVWMRALAAVNDISGAERVIEEMKRD----GRVA   89 (353)
Q Consensus        19 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~   89 (353)
                      .....+......+...|++++|...|++..+.+  |+.     ..+..+...+...|++++|...+++....    +..+
T Consensus         7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   84 (406)
T 3sf4_A            7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL   84 (406)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence            455567778889999999999999999998863  432     46788889999999999999999987653    2012


Q ss_pred             CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCC-CC----HHHHHHHHHHHHccCC--------------------HH
Q 018582           90 ADWTTFSNLASIYVEAGLFEKAERALKELENRNAH-RD----LSAYQFLITLYGQTGN--------------------LS  144 (353)
Q Consensus        90 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~  144 (353)
                      ....++..+...+...|++++|...+++....... ++    ..++..+...|...|+                    ++
T Consensus        85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~  164 (406)
T 3sf4_A           85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ  164 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence            23557788999999999999999999987553211 12    4578888899999999                    99


Q ss_pred             HHHHHHHHHHHh----CCCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCC-----CCcHHHHHHHHHHHHhcCChH
Q 018582          145 EVYRIWRSLRLA----FPNT-ANISYLNMIQVLVNLKDLPGAEKCFKEWESGCA-----TYDIRVTNVMIGAYAKEGRLE  214 (353)
Q Consensus       145 ~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~  214 (353)
                      +|.+.+++....    +..| ...++..+...+...|++++|...+++..+...     .....++..+...|...|+++
T Consensus       165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  244 (406)
T 3sf4_A          165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE  244 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence            999999886543    1111 134678888999999999999999999764311     112347888999999999999


Q ss_pred             HHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcc-cHHHHHHHHHHHHhcCC
Q 018582          215 NAEELKERARRRGAD-PN----AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKD  288 (353)
Q Consensus       215 ~a~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~  288 (353)
                      +|...+++..+.... ++    ..++..+...|...|++++|.+.+++..+......  ..+ ...++..+...+...|+
T Consensus       245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~la~~~~~~g~  322 (406)
T 3sf4_A          245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN--DRIGEGRACWSLGNAYTALGN  322 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHHcCC
Confidence            999999987643111 11    45778888999999999999999999877531100  001 25678888999999999


Q ss_pred             hhhHHHHHHHHHhcCC-----CCChhhhHHHHHHHHHcCC
Q 018582          289 VDGAEGFLEILKKAVD-----DLGVEVFEPLIRTYAAAGR  323 (353)
Q Consensus       289 ~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~  323 (353)
                      +++|...+++..+...     .....++..+...+...|+
T Consensus       323 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  362 (406)
T 3sf4_A          323 HDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGL  362 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhH
Confidence            9999999998876421     1335678888889988887

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.72  E-value=6.7e-14  Score=124.07  Aligned_cols=314  Identities=10%  Similarity=0.067  Sum_probs=219.3

Q ss_pred             HHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 018582            9 LEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRV   88 (353)
Q Consensus         9 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~   88 (353)
                      |+...+..+ -|...|..++. +.+.|++++|..+|+++.+. .+.+...|..++..+.+.|++++|..+|+++...   
T Consensus         2 le~al~~~P-~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~---   75 (530)
T 2ooe_A            2 AEKKLEENP-YDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK---   75 (530)
T ss_dssp             HHHHHHHCT-TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT---
T ss_pred             hhhHhhhCC-CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---
Confidence            444444442 47789999998 47899999999999999985 3456668999999999999999999999999985   


Q ss_pred             CCcHHHHHHHHHHH-HhcCCHHHHHH----HHHHHHHc-cCCC-CHHHHHHHHHHHHc---------cCCHHHHHHHHHH
Q 018582           89 AADWTTFSNLASIY-VEAGLFEKAER----ALKELENR-NAHR-DLSAYQFLITLYGQ---------TGNLSEVYRIWRS  152 (353)
Q Consensus        89 ~~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~  152 (353)
                      .|+...|...+... ...|+.+.|.+    +|+..... |..| +...|...+.....         .|+++.|..+|++
T Consensus        76 ~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~  155 (530)
T 2ooe_A           76 VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQR  155 (530)
T ss_dssp             CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHH
Confidence            46887777777533 45677776665    66666442 4333 56677777776554         6788889888888


Q ss_pred             HHHhCCCCC-hhHHHHH---------------------------------------------------------------
Q 018582          153 LRLAFPNTA-NISYLNM---------------------------------------------------------------  168 (353)
Q Consensus       153 ~~~~~~~~~-~~~~~~l---------------------------------------------------------------  168 (353)
                      ..+. +..+ ...|...                                                               
T Consensus       156 al~~-P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~  234 (530)
T 2ooe_A          156 GCVN-PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWK  234 (530)
T ss_dssp             HTTS-CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHH
T ss_pred             HHhc-hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHH
Confidence            7652 2111 1122111                                                               


Q ss_pred             --HHHHHhc----CCh----hHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh-------cCChH-------HHHHHHHHHH
Q 018582          169 --IQVLVNL----KDL----PGAEKCFKEWESGCATYDIRVTNVMIGAYAK-------EGRLE-------NAEELKERAR  224 (353)
Q Consensus       169 --~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~~~  224 (353)
                        +......    ++.    +.+..+|++.....+ .+...|..++..+.+       .|+++       +|..+|++..
T Consensus       235 ~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al  313 (530)
T 2ooe_A          235 KYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAI  313 (530)
T ss_dssp             HHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHH
Confidence              1000000    111    244556666666543 367888888888876       68987       9999999998


Q ss_pred             hcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc--HHHHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 018582          225 RRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS--SETIRTFMRHFEQEKDVDGAEGFLEILKKA  302 (353)
Q Consensus       225 ~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  302 (353)
                      +.-.+.+...|..++..+.+.|++++|.++|+++++..        |+  ...|..++..+.+.|+++.|..+|++..+.
T Consensus       314 ~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~  385 (530)
T 2ooe_A          314 STLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE--------DIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED  385 (530)
T ss_dssp             TTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS--------SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc--------ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            63123357889999999999999999999999999975        54  258999999999999999999999999987


Q ss_pred             CCCCChhhhHHHHHH-HHHcCCC--hHHHHHHHHhCCCccCH
Q 018582          303 VDDLGVEVFEPLIRT-YAAAGRT--SPVMLRRLKMEKVEVSE  341 (353)
Q Consensus       303 ~~~~~~~~~~~l~~~-~~~~g~~--~~~~~~~m~~~~~~p~~  341 (353)
                      .+ .+...|...+.. +...|+.  +..+++...+  ..|+.
T Consensus       386 ~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~--~~p~~  424 (530)
T 2ooe_A          386 AR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLK--KYGDI  424 (530)
T ss_dssp             TT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--HHTTC
T ss_pred             cC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHH--HCCCC
Confidence            65 445555443333 3357774  4445544333  34543

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.69  E-value=1.4e-15  Score=130.48  Aligned_cols=280  Identities=12%  Similarity=0.051  Sum_probs=210.3

Q ss_pred             hhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCc-----chHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCCcH
Q 018582           22 MPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDS-----YTYNVWMRALAAVNDISGAERVIEEMKRD----GRVAADW   92 (353)
Q Consensus        22 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~   92 (353)
                      ..+..+...+...|++++|+..|++..+.+  |+.     ..|..+...+...|++++|...+++..+.    +..+...
T Consensus        49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  126 (411)
T 4a1s_A           49 LELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA  126 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence            345566778899999999999999998863  443     46788888999999999999999987763    1113345


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcc-----CCCCHHHHHHHHHHHHccCC-----------------HHHHHHHH
Q 018582           93 TTFSNLASIYVEAGLFEKAERALKELENRN-----AHRDLSAYQFLITLYGQTGN-----------------LSEVYRIW  150 (353)
Q Consensus        93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~  150 (353)
                      .++..+...|...|++++|...+++.....     ......++..+...|...|+                 +++|++.+
T Consensus       127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~  206 (411)
T 4a1s_A          127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY  206 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence            677889999999999999999999875531     11235578888899999999                 99999998


Q ss_pred             HHHHHh----CCCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-----CcHHHHHHHHHHHHhcCChHHHHHHH
Q 018582          151 RSLRLA----FPNT-ANISYLNMIQVLVNLKDLPGAEKCFKEWESGCAT-----YDIRVTNVMIGAYAKEGRLENAEELK  220 (353)
Q Consensus       151 ~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~  220 (353)
                      ++..+.    +..+ ...++..+...+...|++++|...+++..+....     ....++..+...|...|++++|...+
T Consensus       207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  286 (411)
T 4a1s_A          207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY  286 (411)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            886442    1111 2247788889999999999999999987653211     11337788899999999999999999


Q ss_pred             HHHHhcCCC-----CChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHH
Q 018582          221 ERARRRGAD-----PNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGF  295 (353)
Q Consensus       221 ~~~~~~~~~-----p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  295 (353)
                      ++..+....     ....++..+...+...|++++|.+++++......... .......++..+...|.+.|++++|...
T Consensus       287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~  365 (411)
T 4a1s_A          287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG-DRIGEARACWSLGNAHSAIGGHERALKY  365 (411)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            987753110     1146778888999999999999999999877531000 0001245788888999999999999999


Q ss_pred             HHHHHhcCC
Q 018582          296 LEILKKAVD  304 (353)
Q Consensus       296 ~~~~~~~~~  304 (353)
                      +++..+...
T Consensus       366 ~~~al~~~~  374 (411)
T 4a1s_A          366 AEQHLQLAX  374 (411)
T ss_dssp             HHHHHHHCC
T ss_pred             HHHHHHHHh
Confidence            999887543

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.67  E-value=8.5e-15  Score=121.64  Aligned_cols=279  Identities=14%  Similarity=0.068  Sum_probs=206.0

Q ss_pred             hhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCC-----cchHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCCcH
Q 018582           22 MPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPD-----SYTYNVWMRALAAVNDISGAERVIEEMKRD----GRVAADW   92 (353)
Q Consensus        22 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~   92 (353)
                      ..+......+...|++++|...|+++.+..  |+     ...+..+...+...|++++|...+++..+.    +..+...
T Consensus         6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   83 (338)
T 3ro2_A            6 LELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA   83 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence            445666778889999999999999998853  44     256778888999999999999999887653    2112235


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHccCC-CC----HHHHHHHHHHHHccCC--------------------HHHHH
Q 018582           93 TTFSNLASIYVEAGLFEKAERALKELENRNAH-RD----LSAYQFLITLYGQTGN--------------------LSEVY  147 (353)
Q Consensus        93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~~a~  147 (353)
                      .++..+...+...|++++|...+++....... ++    ..++..+...+...|+                    +++|.
T Consensus        84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~  163 (338)
T 3ro2_A           84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV  163 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence            67788899999999999999999987543211 12    3477888889999999                    99999


Q ss_pred             HHHHHHHHh----CCCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcC-----CCCcHHHHHHHHHHHHhcCChHHHH
Q 018582          148 RIWRSLRLA----FPNT-ANISYLNMIQVLVNLKDLPGAEKCFKEWESGC-----ATYDIRVTNVMIGAYAKEGRLENAE  217 (353)
Q Consensus       148 ~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~a~  217 (353)
                      +.+++....    +..+ ...++..+...+...|++++|...+++..+..     ......++..+...+...|++++|.
T Consensus       164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  243 (338)
T 3ro2_A          164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS  243 (338)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            988876442    2111 23467788888999999999999999876421     1112347788889999999999999


Q ss_pred             HHHHHHHhcCCC-CC----hhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhH
Q 018582          218 ELKERARRRGAD-PN----AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGA  292 (353)
Q Consensus       218 ~~~~~~~~~~~~-p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  292 (353)
                      ..+++..+.... ++    ..++..+...+...|++++|.+.+++..+...... .......++..+...+.+.|++++|
T Consensus       244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A  322 (338)
T 3ro2_A          244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK-DRIGEGRACWSLGNAYTALGNHDQA  322 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHcCChHHH
Confidence            999987643111 11    45677888889999999999999998876531000 0001245778888899999999999


Q ss_pred             HHHHHHHHhcC
Q 018582          293 EGFLEILKKAV  303 (353)
Q Consensus       293 ~~~~~~~~~~~  303 (353)
                      ...+++..+..
T Consensus       323 ~~~~~~a~~~~  333 (338)
T 3ro2_A          323 MHFAEKHLEIS  333 (338)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHHHHH
Confidence            99999988754

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.67  E-value=6.3e-14  Score=106.05  Aligned_cols=168  Identities=14%  Similarity=0.096  Sum_probs=110.1

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 018582           91 DWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQ  170 (353)
Q Consensus        91 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  170 (353)
                      +..+|..+...|.+.|++++|+..|++..+..+. +..++..+...|.+.|++++|+..+.......+. +...+..+..
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~   81 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS   81 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence            4556666666677777777777777766665443 5666666666667777777777766666655442 4455556666


Q ss_pred             HHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHH
Q 018582          171 VLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKL  250 (353)
Q Consensus       171 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~  250 (353)
                      .+...++++.+...+.+.....+. +...+..+...|.+.|++++|++.|++..+..+ .+..+|..+...|.+.|++++
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHH
Confidence            666677777777777766665433 566666677777777777777777777666532 245666677777777777777


Q ss_pred             HHHHHHHHHHcC
Q 018582          251 AVDCLEKAIDTG  262 (353)
Q Consensus       251 a~~~~~~~~~~~  262 (353)
                      |++.|++.++..
T Consensus       160 A~~~~~~al~~~  171 (184)
T 3vtx_A          160 AVKYFKKALEKE  171 (184)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCC
Confidence            777777776654

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.66  E-value=1.6e-13  Score=112.77  Aligned_cols=220  Identities=14%  Similarity=0.081  Sum_probs=176.0

Q ss_pred             chHHHHHHHHHHCCCCCCcchHHHHHHHHH-------hcCCh-------hHHHHHHHHHHHcCCCCCcHHHHHHHHHHHH
Q 018582           38 EKIPAIIQEMKASSIMPDSYTYNVWMRALA-------AVNDI-------SGAERVIEEMKRDGRVAADWTTFSNLASIYV  103 (353)
Q Consensus        38 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  103 (353)
                      ++|..+|++..... +.+...|..++..+.       ..|++       ++|..+|++..+.- .+.+...|..++..+.
T Consensus        33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~-~p~~~~~~~~~~~~~~  110 (308)
T 2ond_A           33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL-LKKNMLLYFAYADYEE  110 (308)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT-TTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh-CcccHHHHHHHHHHHH
Confidence            57888999988752 446667877777765       35886       89999999999831 3456678899999999


Q ss_pred             hcCCHHHHHHHHHHHHHccCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHH-hcCChhHH
Q 018582          104 EAGLFEKAERALKELENRNAHRDLS-AYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLV-NLKDLPGA  181 (353)
Q Consensus       104 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a  181 (353)
                      +.|++++|..+|++..+..+. +.. +|..++..+.+.|++++|..+|++..+..+ ++...|........ ..|+.++|
T Consensus       111 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A  188 (308)
T 2ond_A          111 SRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVA  188 (308)
T ss_dssp             HTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred             hcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHH
Confidence            999999999999999875433 343 899999999999999999999999987654 34445544433322 37999999


Q ss_pred             HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCC--ChhhHHHHHHHHHccCChHHHHHHHHHH
Q 018582          182 EKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRG-ADP--NAKTWEIFSDYYLRNGDMKLAVDCLEKA  258 (353)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~~  258 (353)
                      .++|++..+..+. +...|..++..+.+.|++++|..+|++..... ..|  ....|..++....+.|+.+.|..+++++
T Consensus       189 ~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a  267 (308)
T 2ond_A          189 FKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR  267 (308)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9999999877544 78899999999999999999999999999863 344  3567888899999999999999999999


Q ss_pred             HHcC
Q 018582          259 IDTG  262 (353)
Q Consensus       259 ~~~~  262 (353)
                      .+..
T Consensus       268 ~~~~  271 (308)
T 2ond_A          268 FTAF  271 (308)
T ss_dssp             HHHT
T ss_pred             HHHc
Confidence            9876

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.66  E-value=5.3e-13  Score=109.73  Aligned_cols=221  Identities=11%  Similarity=0.019  Sum_probs=181.2

Q ss_pred             hHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHh-------cCCH-------HHHHHHHHHHHHc-cCCCCHHHHHHHHHHH
Q 018582           73 SGAERVIEEMKRDGRVAADWTTFSNLASIYVE-------AGLF-------EKAERALKELENR-NAHRDLSAYQFLITLY  137 (353)
Q Consensus        73 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~  137 (353)
                      +.|..+|++....  .+.+...|..++..+..       .|++       ++|..+|++.... .+ .+...|..++..+
T Consensus        33 ~~a~~~~~~al~~--~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-~~~~~~~~~~~~~  109 (308)
T 2ond_A           33 KRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYE  109 (308)
T ss_dssp             HHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence            6788999999986  57788888888887763       5886       8999999999873 43 3677899999999


Q ss_pred             HccCCHHHHHHHHHHHHHhCCCCChh-HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-hcCChHH
Q 018582          138 GQTGNLSEVYRIWRSLRLAFPNTANI-SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYA-KEGRLEN  215 (353)
Q Consensus       138 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~  215 (353)
                      .+.|++++|.++|++..+..+. +.. .|..++..+.+.|++++|..+|++..+..+ .+...|........ ..|++++
T Consensus       110 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~  187 (308)
T 2ond_A          110 ESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSV  187 (308)
T ss_dssp             HHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHH
T ss_pred             HhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHH
Confidence            9999999999999999875432 233 789999999999999999999999998764 35566654444432 3699999


Q ss_pred             HHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcc--cHHHHHHHHHHHHhcCChhhHH
Q 018582          216 AEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP--SSETIRTFMRHFEQEKDVDGAE  293 (353)
Q Consensus       216 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~  293 (353)
                      |..+|++..+..+ -+...|..++..+.+.|++++|..+|++.+....     ..|  ....|..++....+.|+.+.|.
T Consensus       188 A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~-----l~p~~~~~l~~~~~~~~~~~g~~~~a~  261 (308)
T 2ond_A          188 AFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS-----LPPEKSGEIWARFLAFESNIGDLASIL  261 (308)
T ss_dssp             HHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS-----SCGGGCHHHHHHHHHHHHHHSCHHHHH
T ss_pred             HHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccC-----CCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            9999999987632 3678899999999999999999999999999631     114  3678899999999999999999


Q ss_pred             HHHHHHHhcCC
Q 018582          294 GFLEILKKAVD  304 (353)
Q Consensus       294 ~~~~~~~~~~~  304 (353)
                      .+++++.+..|
T Consensus       262 ~~~~~a~~~~p  272 (308)
T 2ond_A          262 KVEKRRFTAFR  272 (308)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHcc
Confidence            99999998877

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.65  E-value=1.3e-14  Score=124.33  Aligned_cols=268  Identities=12%  Similarity=0.050  Sum_probs=203.3

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcc-----CCCCHH
Q 018582           58 TYNVWMRALAAVNDISGAERVIEEMKRDGRVAADW----TTFSNLASIYVEAGLFEKAERALKELENRN-----AHRDLS  128 (353)
Q Consensus        58 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~  128 (353)
                      .+..+...+...|++++|...|+++.+.+  +.+.    .++..+...|...|++++|...+++.....     ......
T Consensus        50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  127 (411)
T 4a1s_A           50 ELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK  127 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence            45556678899999999999999999964  3333    478889999999999999999999875531     122456


Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHHh----CC-CCChhHHHHHHHHHHhcCC-----------------hhHHHHHHH
Q 018582          129 AYQFLITLYGQTGNLSEVYRIWRSLRLA----FP-NTANISYLNMIQVLVNLKD-----------------LPGAEKCFK  186 (353)
Q Consensus       129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~  186 (353)
                      ++..+...|...|++++|...+++....    +. .....++..+...+...|+                 +++|...++
T Consensus       128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~  207 (411)
T 4a1s_A          128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ  207 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence            7888999999999999999999987654    11 1223477888899999999                 999999988


Q ss_pred             HHHhc----C-CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-CC----hhhHHHHHHHHHccCChHHHHHHHH
Q 018582          187 EWESG----C-ATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGAD-PN----AKTWEIFSDYYLRNGDMKLAVDCLE  256 (353)
Q Consensus       187 ~~~~~----~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~~~~~~a~~~~~  256 (353)
                      +..+.    + ......++..+...|...|++++|...+++..+.... ++    ...+..+...|...|++++|.+.++
T Consensus       208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  287 (411)
T 4a1s_A          208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK  287 (411)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence            86542    1 1223457888899999999999999999988753111 11    2377888999999999999999999


Q ss_pred             HHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCC-----CChhhhHHHHHHHHHcCCChHHH
Q 018582          257 KAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDD-----LGVEVFEPLIRTYAAAGRTSPVM  328 (353)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~~~  328 (353)
                      +..+..... +.......++..+...+...|++++|...+++..+....     ....++..+...|.+.|+..+++
T Consensus       288 ~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  363 (411)
T 4a1s_A          288 RTLALAVEL-GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERAL  363 (411)
T ss_dssp             HHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHc-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHH
Confidence            988763100 000012567888999999999999999999988774321     22458889999999999965544

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.65  E-value=1.1e-14  Score=127.04  Aligned_cols=216  Identities=13%  Similarity=0.008  Sum_probs=171.8

Q ss_pred             CcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCh-hHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 018582           36 HPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDI-SGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERA  114 (353)
Q Consensus        36 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  114 (353)
                      .+++++..++...... +.+...+..+..++...|++ ++|...|++..+.  .+.+...+..+..+|.+.|++++|...
T Consensus        83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~  159 (474)
T 4abn_A           83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTC  159 (474)
T ss_dssp             HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            3567777777766542 34566778888888888999 9999999988886  456678888899999999999999999


Q ss_pred             HHHHHHccCCCCHHHHHHHHHHHHcc---------CCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc--------CC
Q 018582          115 LKELENRNAHRDLSAYQFLITLYGQT---------GNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNL--------KD  177 (353)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~  177 (353)
                      |++..+..  |+..++..+...+...         |++++|++.|++..+..+ .+...|..+..++...        |+
T Consensus       160 ~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~  236 (474)
T 4abn_A          160 FSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKI  236 (474)
T ss_dssp             HHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred             HHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccch
Confidence            99887754  5567888888888888         899999999998888765 3567888888888888        88


Q ss_pred             hhHHHHHHHHHHhcCCC--CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHH
Q 018582          178 LPGAEKCFKEWESGCAT--YDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCL  255 (353)
Q Consensus       178 ~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~  255 (353)
                      +++|...|++..+..+.  .+...|..+..+|...|++++|...|++..+... .+...+..+...+...|++++|++.+
T Consensus       237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~~  315 (474)
T 4abn_A          237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLESK  315 (474)
T ss_dssp             HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999998876531  3778888888999999999999999998887642 25567788888888888888888766


Q ss_pred             HHH
Q 018582          256 EKA  258 (353)
Q Consensus       256 ~~~  258 (353)
                      .++
T Consensus       316 ~~~  318 (474)
T 4abn_A          316 GKT  318 (474)
T ss_dssp             TTC
T ss_pred             ccc
Confidence            544

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.64  E-value=1.3e-13  Score=104.28  Aligned_cols=167  Identities=16%  Similarity=0.103  Sum_probs=111.0

Q ss_pred             CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHH
Q 018582           55 DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLI  134 (353)
Q Consensus        55 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  134 (353)
                      ++..|..+...+...|++++|...|++..+.  .|-+..++..+..+|.+.|++++|...+.......+. +...+..+.
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~   80 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILG   80 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHH
Confidence            4455666666677777777777777776665  3555666666777777777777777777766655443 555666666


Q ss_pred             HHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChH
Q 018582          135 TLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLE  214 (353)
Q Consensus       135 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  214 (353)
                      ..+...++++.+.+.+.+.....+ .+...+..+..++.+.|++++|.+.|++..+..+. +..+|..+..+|.+.|+++
T Consensus        81 ~~~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~  158 (184)
T 3vtx_A           81 SANFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRD  158 (184)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHH
Confidence            666677777777777776666544 24556666677777777777777777776665533 5666777777777777777


Q ss_pred             HHHHHHHHHHhc
Q 018582          215 NAEELKERARRR  226 (353)
Q Consensus       215 ~a~~~~~~~~~~  226 (353)
                      +|...|++..+.
T Consensus       159 ~A~~~~~~al~~  170 (184)
T 3vtx_A          159 EAVKYFKKALEK  170 (184)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhC
Confidence            777777776654

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.64  E-value=4.3e-14  Score=120.04  Aligned_cols=291  Identities=11%  Similarity=0.051  Sum_probs=205.8

Q ss_pred             hHHHHHHHHHHHhc--CC--CCCchhHHHHHHHH--HhcCCcchHH-----------HHHHHHHHCCCCCCcch------
Q 018582            2 TEKAEALLEKMKEL--NL--GFSSMPFNSLMTLY--AKTGHPEKIP-----------AIIQEMKASSIMPDSYT------   58 (353)
Q Consensus         2 ~~~A~~~~~~m~~~--~~--~~~~~~~~~ll~~~--~~~~~~~~a~-----------~~~~~m~~~~~~p~~~~------   58 (353)
                      +++|..+++++.+.  .+  .++...|..++..-  .-.+.++.+.           +.++.+....  .+...      
T Consensus        28 ~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~~l~~~~  105 (383)
T 3ulq_A           28 IPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTGLLEYYF  105 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchhHHHHHH
Confidence            67888988888653  22  13334444444321  1223333333           7777765421  12121      


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHcCC---CCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCC------CCHH
Q 018582           59 YNVWMRALAAVNDISGAERVIEEMKRDGR---VAA-DWTTFSNLASIYVEAGLFEKAERALKELENRNAH------RDLS  128 (353)
Q Consensus        59 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~  128 (353)
                      +......+...|++++|...|++..+.-.   ..+ ...++..+...|...|+++.|...+++..+....      ....
T Consensus       106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  185 (383)
T 3ulq_A          106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ  185 (383)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence            22255677889999999999999987411   122 3467889999999999999999999987653211      1245


Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHHhCCC-CC----hhHHHHHHHHHHhcCChhHHHHHHHHHHh-----cCCCCcHH
Q 018582          129 AYQFLITLYGQTGNLSEVYRIWRSLRLAFPN-TA----NISYLNMIQVLVNLKDLPGAEKCFKEWES-----GCATYDIR  198 (353)
Q Consensus       129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~  198 (353)
                      +++.+...|...|++++|++.|++..+.... ++    ..++..+..+|...|++++|...+++..+     ...+....
T Consensus       186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  265 (383)
T 3ulq_A          186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ  265 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence            7888899999999999999999987654211 11    13788899999999999999999999876     33134577


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCCChhhHHHHHHHHHccCC---hHHHHHHHHHHHHcCCCCCCCCcc
Q 018582          199 VTNVMIGAYAKEGRLENAEELKERARRR----GADPNAKTWEIFSDYYLRNGD---MKLAVDCLEKAIDTGRGDGGKWVP  271 (353)
Q Consensus       199 ~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~  271 (353)
                      ++..+...|.+.|++++|...+++..+.    +-+.....+..+...+...|+   +++|+.++++.   +.     ...
T Consensus       266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~-----~~~  337 (383)
T 3ulq_A          266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---ML-----YAD  337 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TC-----HHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cC-----HHH
Confidence            8899999999999999999999987653    111122335667788888998   77777777765   21     113


Q ss_pred             cHHHHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 018582          272 SSETIRTFMRHFEQEKDVDGAEGFLEILKKA  302 (353)
Q Consensus       272 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  302 (353)
                      ....+..+...|...|++++|...+++..+.
T Consensus       338 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~~  368 (383)
T 3ulq_A          338 LEDFAIDVAKYYHERKNFQKASAYFLKVEQV  368 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            3567888999999999999999999988763

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.64  E-value=4.8e-13  Score=125.00  Aligned_cols=265  Identities=13%  Similarity=0.142  Sum_probs=172.5

Q ss_pred             hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 018582            2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEE   81 (353)
Q Consensus         2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~   81 (353)
                      +++|..+|+....     .....+.++.   ..+++++|.++.++.      -+..+|..+..++...|++++|.+.|.+
T Consensus      1065 yEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiK 1130 (1630)
T 1xi4_A         1065 FEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIK 1130 (1630)
T ss_pred             HHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence            5666666666421     1122233322   456666666666533      2355677777777777777777777743


Q ss_pred             HHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCC
Q 018582           82 MKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTA  161 (353)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  161 (353)
                      .       .|...|..++.++.+.|++++|.+.+....+..  +++...+.++.+|.+.+++++...+.    .   .++
T Consensus      1131 A-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n 1194 (1630)
T 1xi4_A         1131 A-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPN 1194 (1630)
T ss_pred             c-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCC
Confidence            2       345556667777777777777777777665543  22223334667777777766433332    1   234


Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 018582          162 NISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDY  241 (353)
Q Consensus       162 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~  241 (353)
                      ...|..+...|...|++++|..+|...         ..|..+..+|.+.|++++|.+.+++..      +..+|..+..+
T Consensus      1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~a 1259 (1630)
T 1xi4_A         1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFA 1259 (1630)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHH
Confidence            556666777777777777777777763         367777777777777777777777652      55777777777


Q ss_pred             HHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHc
Q 018582          242 YLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAA  321 (353)
Q Consensus       242 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  321 (353)
                      |...|++..|..+...+.           .++..+..++..|.+.|.+++|..+++.....+. -+...|+-|...|++.
T Consensus      1260 cve~~Ef~LA~~cgl~Ii-----------v~~deLeeli~yYe~~G~feEAI~LlE~aL~Ler-aH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A         1260 CVDGKEFRLAQMCGLHIV-----------VHADELEELINYYQDRGYFEELITMLEAALGLER-AHMGMFTELAILYSKF 1327 (1630)
T ss_pred             HhhhhHHHHHHHHHHhhh-----------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCh-hHhHHHHHHHHHHHhC
Confidence            777777777766654311           4556667888889999999999999988887775 7778888888888775


Q ss_pred             CC
Q 018582          322 GR  323 (353)
Q Consensus       322 g~  323 (353)
                      .-
T Consensus      1328 ~p 1329 (1630)
T 1xi4_A         1328 KP 1329 (1630)
T ss_pred             CH
Confidence            44

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.64  E-value=6.9e-14  Score=119.47  Aligned_cols=271  Identities=14%  Similarity=0.050  Sum_probs=204.5

Q ss_pred             CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----cCC-
Q 018582           54 PDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAAD----WTTFSNLASIYVEAGLFEKAERALKELENR----NAH-  124 (353)
Q Consensus        54 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-  124 (353)
                      +....+......+...|++++|...|+++.+.+  +.+    ..++..+...+...|++++|...+++....    +.. 
T Consensus         7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   84 (406)
T 3sf4_A            7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL   84 (406)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence            344456677788999999999999999999864  333    357888999999999999999999987442    111 


Q ss_pred             CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC-CC----hhHHHHHHHHHHhcCC--------------------hh
Q 018582          125 RDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN-TA----NISYLNMIQVLVNLKD--------------------LP  179 (353)
Q Consensus       125 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~  179 (353)
                      ....++..+...+...|++++|...+++..+.... ++    ..++..+...+...|+                    ++
T Consensus        85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~  164 (406)
T 3sf4_A           85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ  164 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence            12557888889999999999999999987654211 11    3478888899999999                    99


Q ss_pred             HHHHHHHHHHhc----C-CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCC----hhhHHHHHHHHHccCChH
Q 018582          180 GAEKCFKEWESG----C-ATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGA-DPN----AKTWEIFSDYYLRNGDMK  249 (353)
Q Consensus       180 ~a~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~----~~~~~~li~~~~~~~~~~  249 (353)
                      +|...+++....    + ......++..+...|...|++++|...+++..+... .++    ..++..+...+...|+++
T Consensus       165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  244 (406)
T 3sf4_A          165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE  244 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence            999998886532    1 112345788889999999999999999998774311 112    237888889999999999


Q ss_pred             HHHHHHHHHHHcCCCCCCCCcc-cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCC-C----ChhhhHHHHHHHHHcCC
Q 018582          250 LAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDD-L----GVEVFEPLIRTYAAAGR  323 (353)
Q Consensus       250 ~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~  323 (353)
                      +|...+++..+......  ..+ ...++..+...+...|++++|...+++..+.... .    ...++..+...|.+.|+
T Consensus       245 ~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~  322 (406)
T 3sf4_A          245 TASEYYKKTLLLARQLK--DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN  322 (406)
T ss_dssp             HHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHhCc--CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence            99999999876531000  001 1567888999999999999999999988774321 1    25688899999999999


Q ss_pred             ChHHH
Q 018582          324 TSPVM  328 (353)
Q Consensus       324 ~~~~~  328 (353)
                      +..++
T Consensus       323 ~~~A~  327 (406)
T 3sf4_A          323 HDQAM  327 (406)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55544

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.63  E-value=3.9e-14  Score=117.63  Aligned_cols=268  Identities=14%  Similarity=0.052  Sum_probs=200.5

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----cCC-CCHH
Q 018582           58 TYNVWMRALAAVNDISGAERVIEEMKRDGRVAAD----WTTFSNLASIYVEAGLFEKAERALKELENR----NAH-RDLS  128 (353)
Q Consensus        58 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~  128 (353)
                      .+......+...|++++|...|+++.+..  +.+    ...+..+...+...|++++|...+++....    +.. ....
T Consensus         7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   84 (338)
T 3ro2_A            7 ELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK   84 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence            34555677889999999999999999863  333    467888999999999999999999987542    111 2356


Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHHhCCC-CC----hhHHHHHHHHHHhcCC--------------------hhHHHH
Q 018582          129 AYQFLITLYGQTGNLSEVYRIWRSLRLAFPN-TA----NISYLNMIQVLVNLKD--------------------LPGAEK  183 (353)
Q Consensus       129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~~a~~  183 (353)
                      ++..+...+...|++++|...+++..+.... ++    ..++..+...+...|+                    +++|..
T Consensus        85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~  164 (338)
T 3ro2_A           85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD  164 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence            7888899999999999999999987654211 12    2377888899999999                    999999


Q ss_pred             HHHHHHhc----C-CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCC----hhhHHHHHHHHHccCChHHHHH
Q 018582          184 CFKEWESG----C-ATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGA-DPN----AKTWEIFSDYYLRNGDMKLAVD  253 (353)
Q Consensus       184 ~~~~~~~~----~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~----~~~~~~li~~~~~~~~~~~a~~  253 (353)
                      .+++....    + ......++..+...+...|++++|...+++..+... .++    ..++..+...+...|++++|.+
T Consensus       165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  244 (338)
T 3ro2_A          165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE  244 (338)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            98886532    1 122345778888999999999999999998764311 011    2377888889999999999999


Q ss_pred             HHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCC-----CChhhhHHHHHHHHHcCCChHHH
Q 018582          254 CLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDD-----LGVEVFEPLIRTYAAAGRTSPVM  328 (353)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~~~  328 (353)
                      .+++..+...... .......++..+...+...|++++|...+++..+..+.     ....++..+...|.+.|+..+++
T Consensus       245 ~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  323 (338)
T 3ro2_A          245 YYKKTLLLARQLK-DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM  323 (338)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence            9999876531000 00011567888889999999999999999988764321     12457889999999999966554

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.62  E-value=2.4e-12  Score=120.48  Aligned_cols=282  Identities=10%  Similarity=0.065  Sum_probs=222.1

Q ss_pred             hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 018582            2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEE   81 (353)
Q Consensus         2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~   81 (353)
                      +++|.++.++.      .+..+|..+..++...|++++|++.|.+.      -|...|..++.++.+.|++++|.+.|..
T Consensus      1092 ldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~m 1159 (1630)
T 1xi4_A         1092 LDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 1159 (1630)
T ss_pred             HHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            45566655544      35678999999999999999999999653      4778899999999999999999999998


Q ss_pred             HHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCC
Q 018582           82 MKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTA  161 (353)
Q Consensus        82 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  161 (353)
                      .++..   ++....+.++.+|++.++++......    .   .++...|..+...|...|++++|..+|...        
T Consensus      1160 Ark~~---~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-------- 1221 (1630)
T 1xi4_A         1160 ARKKA---RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------- 1221 (1630)
T ss_pred             HHhhc---ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------
Confidence            88753   44444446999999999988644443    2   346677888999999999999999999984        


Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 018582          162 NISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDY  241 (353)
Q Consensus       162 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~  241 (353)
                       ..|..+..++.+.|++++|.+.+++.      .+..+|..+..+|...|++..|......+.     .+...+..++..
T Consensus      1222 -~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~y 1289 (1630)
T 1xi4_A         1222 -SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINY 1289 (1630)
T ss_pred             -hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHH
Confidence             48999999999999999999999986      366899999999999999999998776532     356778899999


Q ss_pred             HHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhc--CChhhHHHHHHHHHhcCCC------CChhhhHH
Q 018582          242 YLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQE--KDVDGAEGFLEILKKAVDD------LGVEVFEP  313 (353)
Q Consensus       242 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~------~~~~~~~~  313 (353)
                      |.+.|.+++|+.+++..+...       .-....|+-+..++++.  ++..++.+.|..-  .+.+      .+...|.-
T Consensus      1290 Ye~~G~feEAI~LlE~aL~Le-------raH~gmftELaiLyaKy~peklmEhlk~f~~r--ini~k~~r~~e~~~lW~e 1360 (1630)
T 1xi4_A         1290 YQDRGYFEELITMLEAALGLE-------RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAE 1360 (1630)
T ss_pred             HHHcCCHHHHHHHHHHHhccC-------hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHh--cccchHhHHHHHHHHHHH
Confidence            999999999999998887664       13456676676666654  3455555555432  2221      35678999


Q ss_pred             HHHHHHHcCCChHHHHHHHHh
Q 018582          314 LIRTYAAAGRTSPVMLRRLKM  334 (353)
Q Consensus       314 l~~~~~~~g~~~~~~~~~m~~  334 (353)
                      ++-.|.+.|++..|+...|..
T Consensus      1361 lv~LY~~~~e~dnA~~tm~~h 1381 (1630)
T 1xi4_A         1361 LVFLYDKYEEYDNAIITMMNH 1381 (1630)
T ss_pred             HHHHHHhcccHHHHHHHHHhc
Confidence            999999999988887655554

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.62  E-value=5.4e-15  Score=121.62  Aligned_cols=239  Identities=14%  Similarity=0.111  Sum_probs=132.2

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHc-------CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcc-------C
Q 018582           58 TYNVWMRALAAVNDISGAERVIEEMKRD-------GRVAADWTTFSNLASIYVEAGLFEKAERALKELENRN-------A  123 (353)
Q Consensus        58 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~  123 (353)
                      ++..+...+...|++++|..+++++.+.       . .+....++..+...|...|++++|...+++.....       .
T Consensus        29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  107 (311)
T 3nf1_A           29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHD-HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH  107 (311)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSS-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence            4455555556666666666666655542       1 23334455566666666666666666666654321       1


Q ss_pred             CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHh------CCCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhc-----
Q 018582          124 HRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLA------FPNT-ANISYLNMIQVLVNLKDLPGAEKCFKEWESG-----  191 (353)
Q Consensus       124 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----  191 (353)
                      .....++..+...|...|++++|.+.+++..+.      +..| ....+..+...+...|++++|...+++..+.     
T Consensus       108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~  187 (311)
T 3nf1_A          108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL  187 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred             hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence            122445566666666666666666666665443      1111 2234566666677777777777777766543     


Q ss_pred             -C-CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-------CCCCChh-------hHHHHHHHHHccCChHHHHHHH
Q 018582          192 -C-ATYDIRVTNVMIGAYAKEGRLENAEELKERARRR-------GADPNAK-------TWEIFSDYYLRNGDMKLAVDCL  255 (353)
Q Consensus       192 -~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~p~~~-------~~~~li~~~~~~~~~~~a~~~~  255 (353)
                       + .+....++..+...|...|++++|...++++.+.       ...+...       .+..+...+...+.+.++...+
T Consensus       188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  267 (311)
T 3nf1_A          188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY  267 (311)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred             CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence             1 1223456677777777788888888777776642       1111111       1222233344556666677777


Q ss_pred             HHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 018582          256 EKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD  304 (353)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  304 (353)
                      .......       .....++..+..+|.+.|++++|.+.+++..+..+
T Consensus       268 ~~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~  309 (311)
T 3nf1_A          268 KACKVDS-------PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK  309 (311)
T ss_dssp             ------C-------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             hhcCCCC-------chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence            7766654       13467888899999999999999999998876543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.62  E-value=3.3e-15  Score=122.91  Aligned_cols=242  Identities=15%  Similarity=0.112  Sum_probs=174.5

Q ss_pred             CchhHHHHHHHHHhcCCcchHHHHHHHHHHC-------CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHc------C
Q 018582           20 SSMPFNSLMTLYAKTGHPEKIPAIIQEMKAS-------SIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRD------G   86 (353)
Q Consensus        20 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~   86 (353)
                      +..++..+...+...|++++|...|+++.+.       ..+....++..+...+...|++++|...+++..+.      +
T Consensus        26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  105 (311)
T 3nf1_A           26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK  105 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            4567889999999999999999999998873       22334567888899999999999999999998874      3


Q ss_pred             CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcc------C-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHh---
Q 018582           87 RVAADWTTFSNLASIYVEAGLFEKAERALKELENRN------A-HRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLA---  156 (353)
Q Consensus        87 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---  156 (353)
                      ..+....++..+...|...|++++|...+++..+..      . .....++..+...+...|++++|++.+++....   
T Consensus       106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~  185 (311)
T 3nf1_A          106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT  185 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            123446678899999999999999999999986542      1 224567888999999999999999999998764   


Q ss_pred             ---CCCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcC-------CCC-------cHHHHHHHHHHHHhcCChHHHHH
Q 018582          157 ---FPNT-ANISYLNMIQVLVNLKDLPGAEKCFKEWESGC-------ATY-------DIRVTNVMIGAYAKEGRLENAEE  218 (353)
Q Consensus       157 ---~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~-------~~~~~~~li~~~~~~g~~~~a~~  218 (353)
                         +..| ...++..+..++...|++++|...++++.+..       ..+       ....+..+...+...+.+.++..
T Consensus       186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  265 (311)
T 3nf1_A          186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG  265 (311)
T ss_dssp             TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence               2122 23468888999999999999999999987531       111       11222233334445566667777


Q ss_pred             HHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582          219 LKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG  262 (353)
Q Consensus       219 ~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  262 (353)
                      .+....... +.+..++..+...|.+.|++++|.+++++..+..
T Consensus       266 ~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~  308 (311)
T 3nf1_A          266 WYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR  308 (311)
T ss_dssp             --------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence            777766542 2345778899999999999999999999988753

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.62  E-value=8.5e-14  Score=121.32  Aligned_cols=207  Identities=12%  Similarity=0.056  Sum_probs=178.0

Q ss_pred             HHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHH
Q 018582          108 FEKAERALKELENRNAHRDLSAYQFLITLYGQTGNL-SEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFK  186 (353)
Q Consensus       108 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  186 (353)
                      ++++...++......+ .+...+..+...+...|++ ++|++.|++..+..+ .+...|..+..+|...|++++|.+.|+
T Consensus        84 ~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~  161 (474)
T 4abn_A           84 MEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCFS  161 (474)
T ss_dssp             HHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            5666777776655433 4788888999999999999 999999999888765 357789999999999999999999999


Q ss_pred             HHHhcCCCCcHHHHHHHHHHHHhc---------CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHcc--------CChH
Q 018582          187 EWESGCATYDIRVTNVMIGAYAKE---------GRLENAEELKERARRRGADPNAKTWEIFSDYYLRN--------GDMK  249 (353)
Q Consensus       187 ~~~~~~~~~~~~~~~~li~~~~~~---------g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------~~~~  249 (353)
                      +..+..  |+...+..+...|...         |++++|...|++..+... .+...|..+...|...        |+++
T Consensus       162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~~  238 (474)
T 4abn_A          162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKISQ  238 (474)
T ss_dssp             HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccchHH
Confidence            998875  4568888999999999         999999999999988743 3678889999999888        9999


Q ss_pred             HHHHHHHHHHHcCCCCCCCCcc----cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCCh
Q 018582          250 LAVDCLEKAIDTGRGDGGKWVP----SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTS  325 (353)
Q Consensus       250 ~a~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  325 (353)
                      +|++.|++..+..        |    +...|..+..+|...|++++|...|++..+..+ .+...+..+..++...|+..
T Consensus       239 ~A~~~~~~al~~~--------p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~  309 (474)
T 4abn_A          239 QALSAYAQAEKVD--------RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLT  309 (474)
T ss_dssp             HHHHHHHHHHHHC--------GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC--------CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHH
Confidence            9999999999986        6    678899999999999999999999999999998 78889999999999888865


Q ss_pred             HHH
Q 018582          326 PVM  328 (353)
Q Consensus       326 ~~~  328 (353)
                      +++
T Consensus       310 eAi  312 (474)
T 4abn_A          310 SLL  312 (474)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.57  E-value=5.2e-12  Score=106.74  Aligned_cols=276  Identities=12%  Similarity=0.045  Sum_probs=197.0

Q ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcc-----hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc----HHH
Q 018582           24 FNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSY-----TYNVWMRALAAVNDISGAERVIEEMKRDGRVAAD----WTT   94 (353)
Q Consensus        24 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~   94 (353)
                      +......+...|++++|...+++..... +++..     ++..+...+...|++++|...+++.........+    ..+
T Consensus        17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~   95 (373)
T 1hz4_A           17 NALRAQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS   95 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            3444556778999999999999988753 22221     4566667888899999999999988763211122    233


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcc----CC--C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCC----Chh
Q 018582           95 FSNLASIYVEAGLFEKAERALKELENRN----AH--R-DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNT----ANI  163 (353)
Q Consensus        95 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~  163 (353)
                      +..+...+...|++++|...+++.....    ..  | ...++..+...+...|++++|...+++........    ...
T Consensus        96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  175 (373)
T 1hz4_A           96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ  175 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence            5678888999999999999999875532    11  2 23466778889999999999999999987654321    224


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc-HHHHH-----HHHHHHHhcCChHHHHHHHHHHHhcCCCCC---hhh
Q 018582          164 SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYD-IRVTN-----VMIGAYAKEGRLENAEELKERARRRGADPN---AKT  234 (353)
Q Consensus       164 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~-----~li~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~  234 (353)
                      ++..+...+...|++++|...+++.......++ ...+.     ..+..+...|++++|...+++.......+.   ...
T Consensus       176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  255 (373)
T 1hz4_A          176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ  255 (373)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence            677788889999999999999999765321211 11121     233457789999999999999876432211   224


Q ss_pred             HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccH-HHHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 018582          235 WEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSS-ETIRTFMRHFEQEKDVDGAEGFLEILKKA  302 (353)
Q Consensus       235 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  302 (353)
                      +..+...+...|++++|.+.++..........  ..++. ..+..+..++...|+.++|...+++....
T Consensus       256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~  322 (373)
T 1hz4_A          256 WRNIARAQILLGEFEPAEIVLEELNENARSLR--LMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL  322 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc--chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            56778889999999999999998876521000  11222 36677778899999999999999987764

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.57  E-value=6.4e-13  Score=112.80  Aligned_cols=290  Identities=12%  Similarity=0.025  Sum_probs=202.6

Q ss_pred             HHhcCCcchHHHHHHHHHHC--CCCCCcc--hHHHHHHH--HHhcCChhHHH-----------HHHHHHHHcCCCCCcHH
Q 018582           31 YAKTGHPEKIPAIIQEMKAS--SIMPDSY--TYNVWMRA--LAAVNDISGAE-----------RVIEEMKRDGRVAADWT   93 (353)
Q Consensus        31 ~~~~~~~~~a~~~~~~m~~~--~~~p~~~--~~~~ll~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~~~~   93 (353)
                      +.+.+++++|..+++++.+.  .+..|..  .|-.++..  ....++++.+.           +.++.+....   .+..
T Consensus        22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~---~~~~   98 (383)
T 3ulq_A           22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ---ARLT   98 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT---HHHH
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC---CCch
Confidence            45689999999999998764  2323332  33333322  22334444455           7777766532   2222


Q ss_pred             HH------HHHHHHHHhcCCHHHHHHHHHHHHHccC-CC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC-C-
Q 018582           94 TF------SNLASIYVEAGLFEKAERALKELENRNA-HR----DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN-T-  160 (353)
Q Consensus        94 ~~------~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-  160 (353)
                      .+      ......+...|++++|...+++....-. .+    ...++..+...|...|++++|+..+++..+.... + 
T Consensus        99 ~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~  178 (383)
T 3ulq_A           99 GLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA  178 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST
T ss_pred             hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc
Confidence            22      2366778899999999999999865311 12    3467888999999999999999999987654211 1 


Q ss_pred             ----ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCC-----CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----C
Q 018582          161 ----ANISYLNMIQVLVNLKDLPGAEKCFKEWESGCA-----TYDIRVTNVMIGAYAKEGRLENAEELKERARRR----G  227 (353)
Q Consensus       161 ----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~  227 (353)
                          ...++..+..+|...|++++|...+++..+...     .....++..+...|...|++++|...+++..+.    +
T Consensus       179 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~  258 (383)
T 3ulq_A          179 YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN  258 (383)
T ss_dssp             THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence                124788889999999999999999999774311     112357888999999999999999999998762    2


Q ss_pred             C-CCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc-HHHHHHHHHHHHhcCC---hhhHHHHHHHHHhc
Q 018582          228 A-DPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKD---VDGAEGFLEILKKA  302 (353)
Q Consensus       228 ~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~  302 (353)
                      . +....++..+...+...|++++|.+.+++..+.....   ..|. ...+..+...+...|+   .++|..++++..  
T Consensus       259 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~--  333 (383)
T 3ulq_A          259 ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA---GDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM--  333 (383)
T ss_dssp             CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT--
T ss_pred             cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc--
Confidence            2 2345678889999999999999999999987752100   0022 2335677788888998   777777776651  


Q ss_pred             CCCCChhhhHHHHHHHHHcCCChHHH
Q 018582          303 VDDLGVEVFEPLIRTYAAAGRTSPVM  328 (353)
Q Consensus       303 ~~~~~~~~~~~l~~~~~~~g~~~~~~  328 (353)
                      ........+..+...|.+.|++..++
T Consensus       334 ~~~~~~~~~~~la~~y~~~g~~~~A~  359 (383)
T 3ulq_A          334 LYADLEDFAIDVAKYYHERKNFQKAS  359 (383)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            11134457888999999999965554

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.57  E-value=1e-12  Score=113.79  Aligned_cols=286  Identities=15%  Similarity=0.122  Sum_probs=147.7

Q ss_pred             hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCc---chHHHHHHHHHHCCCCCCcchHHHHHHHHHhcC-----Chh
Q 018582            2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHP---EKIPAIIQEMKASSIMPDSYTYNVWMRALAAVN-----DIS   73 (353)
Q Consensus         2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-----~~~   73 (353)
                      +++|+++|+...+.|   ++.++..|...|...|++   ++|.+.|++..+.    +...+..+...+...+     +++
T Consensus        19 ~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~~~   91 (452)
T 3e4b_A           19 TVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAEHH   91 (452)
T ss_dssp             HHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC--CCHHHHH
T ss_pred             HHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcCHH
Confidence            578888888887765   445555666666677777   8888888887753    5556666666454544     677


Q ss_pred             HHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHcc----------------------------
Q 018582           74 GAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEK---AERALKELENRN----------------------------  122 (353)
Q Consensus        74 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~----------------------------  122 (353)
                      +|...|++..+.| . ++  .+..|...|...+..+.   +.+.+......|                            
T Consensus        92 ~A~~~~~~Aa~~g-~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~  167 (452)
T 3e4b_A           92 EAESLLKKAFANG-E-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERI  167 (452)
T ss_dssp             HHHHHHHHHHHTT-C-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHH
T ss_pred             HHHHHHHHHHHCC-C-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHH
Confidence            8888888888765 2 22  34445555554443222   222222221111                            


Q ss_pred             ----CCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc----CChhHHHHHHHHHHhc
Q 018582          123 ----AHRDLSAYQFLITLYGQTG---NLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNL----KDLPGAEKCFKEWESG  191 (353)
Q Consensus       123 ----~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~  191 (353)
                          ...++.++..|...|...|   +.++|++.|++..+.|. ++...+..+...|...    +++++|...|++.. .
T Consensus       168 ~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~  245 (452)
T 3e4b_A          168 CKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P  245 (452)
T ss_dssp             HHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C
Confidence                1122335666666666666   66667777766666654 2333334455555443    56667777776665 3


Q ss_pred             CCCCcHHHHHHHHHH-H--HhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccC-----ChHHHHHHHHHHHHcCC
Q 018582          192 CATYDIRVTNVMIGA-Y--AKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNG-----DMKLAVDCLEKAIDTGR  263 (353)
Q Consensus       192 ~~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~-----~~~~a~~~~~~~~~~~~  263 (353)
                      +   +...+..+... |  ...+++++|...|++..+.|   +...+..+...|. .|     ++++|+++|++.. .  
T Consensus       246 g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~--  315 (452)
T 3e4b_A          246 G---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G--  315 (452)
T ss_dssp             G---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T--
T ss_pred             C---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C--
Confidence            2   44455555555 3  34567777777777766654   4555555655555 33     6777777776665 3  


Q ss_pred             CCCCCCcccHHHHHHHHHHHHh----cCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHH
Q 018582          264 GDGGKWVPSSETIRTFMRHFEQ----EKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAA  320 (353)
Q Consensus       264 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  320 (353)
                             -+...+..|...|..    ..++++|...|++..+.|.   +.....|...|..
T Consensus       316 -------g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~  366 (452)
T 3e4b_A          316 -------REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQ  366 (452)
T ss_dssp             -------TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHS
T ss_pred             -------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHh
Confidence                   344555555555554    3366777777776666543   3445555555553

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.56  E-value=2.5e-12  Score=108.95  Aligned_cols=291  Identities=12%  Similarity=0.036  Sum_probs=202.3

Q ss_pred             hHHHHHHHHHHHhc--CCC--CCchhHHHHHHH--HHhcCCcchHH---------HHHHHHHHCCCCCCc--c--hHHHH
Q 018582            2 TEKAEALLEKMKEL--NLG--FSSMPFNSLMTL--YAKTGHPEKIP---------AIIQEMKASSIMPDS--Y--TYNVW   62 (353)
Q Consensus         2 ~~~A~~~~~~m~~~--~~~--~~~~~~~~ll~~--~~~~~~~~~a~---------~~~~~m~~~~~~p~~--~--~~~~l   62 (353)
                      +++|.++++++...  .+.  ++...|-.|+..  ..-.+.+..+.         +.++.+.....+.+.  .  .+...
T Consensus        28 ~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~~~~~~  107 (378)
T 3q15_A           28 VPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFR  107 (378)
T ss_dssp             HHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHHHHHHHHHH
Confidence            57899999987653  221  233444555443  12234444444         777776542211111  1  22334


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHcCCCCC----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCC------CCHHHHHH
Q 018582           63 MRALAAVNDISGAERVIEEMKRDGRVAA----DWTTFSNLASIYVEAGLFEKAERALKELENRNAH------RDLSAYQF  132 (353)
Q Consensus        63 l~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~  132 (353)
                      ...+...|++++|...|++..+.....+    ...++..+...|...|+++.|...+++..+....      ....+++.
T Consensus       108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  187 (378)
T 3q15_A          108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV  187 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence            4567789999999999999886421122    2457788999999999999999999987553211      12457888


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHh----CCCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHh-----cCCCCcHHHHHH
Q 018582          133 LITLYGQTGNLSEVYRIWRSLRLA----FPNT-ANISYLNMIQVLVNLKDLPGAEKCFKEWES-----GCATYDIRVTNV  202 (353)
Q Consensus       133 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~  202 (353)
                      +...|...|++++|.+.|++..+.    +..+ ...++..+..+|...|++++|...+++...     ..+. ...++..
T Consensus       188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~  266 (378)
T 3q15_A          188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFG  266 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHH
Confidence            999999999999999999987653    1111 124678889999999999999999999876     4433 4788889


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhcCCC---C-ChhhHHHHHHHHHccCC---hHHHHHHHHHHHHcCCCCCCCCcccHHH
Q 018582          203 MIGAYAKEGRLENAEELKERARRRGAD---P-NAKTWEIFSDYYLRNGD---MKLAVDCLEKAIDTGRGDGGKWVPSSET  275 (353)
Q Consensus       203 li~~~~~~g~~~~a~~~~~~~~~~~~~---p-~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~  275 (353)
                      +...|.+.|++++|...+++..+....   | ....+..+...+...++   +.+|+.++++   .+.     .......
T Consensus       267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~-----~~~~~~~  338 (378)
T 3q15_A          267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNL-----HAYIEAC  338 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTC-----HHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCC-----hhHHHHH
Confidence            999999999999999999998764211   1 23345566666777888   7777777776   221     1123456


Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHh
Q 018582          276 IRTFMRHFEQEKDVDGAEGFLEILKK  301 (353)
Q Consensus       276 ~~~l~~~~~~~~~~~~a~~~~~~~~~  301 (353)
                      +..+...|...|++++|...+++..+
T Consensus       339 ~~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          339 ARSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            77888999999999999999998765

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.56  E-value=2e-12  Score=101.33  Aligned_cols=209  Identities=12%  Similarity=0.001  Sum_probs=138.6

Q ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHH
Q 018582           89 AADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNM  168 (353)
Q Consensus        89 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  168 (353)
                      +.|...+......+.+.|++++|...|++..+..+.++...+..+...+...|++++|++.|++..+..+. +...+..+
T Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l   82 (228)
T 4i17_A            4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGK   82 (228)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHH
Confidence            34556777788888888888888888888877665456677777788888888888888888887766542 55677777


Q ss_pred             HHHHHhcCChhHHHHHHHHHHhcCCCCcH-------HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChh---hHHHH
Q 018582          169 IQVLVNLKDLPGAEKCFKEWESGCATYDI-------RVTNVMIGAYAKEGRLENAEELKERARRRGADPNAK---TWEIF  238 (353)
Q Consensus       169 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~---~~~~l  238 (353)
                      ..++...|++++|...+++..+..+. +.       ..|..+...+...|++++|...|++..+.  .|+..   .+..+
T Consensus        83 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l  159 (228)
T 4i17_A           83 SAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL  159 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence            88888888888888888887776533 44       44666777777778888888888777764  33221   23333


Q ss_pred             HHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHH
Q 018582          239 SDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIR  316 (353)
Q Consensus       239 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  316 (353)
                      ...|..     .+..+++++...+.       .+...+....  ....+.+++|...+++..+..| .+..+...+..
T Consensus       160 ~~~~~~-----~~~~~~~~a~~~~~-------~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p-~~~~~~~~l~~  222 (228)
T 4i17_A          160 GVLFYN-----NGADVLRKATPLAS-------SNKEKYASEK--AKADAAFKKAVDYLGEAVTLSP-NRTEIKQMQDQ  222 (228)
T ss_dssp             HHHHHH-----HHHHHHHHHGGGTT-------TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             HHHHHH-----HHHHHHHHHHhccc-------CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCC-CCHHHHHHHHH
Confidence            444432     33444555555431       2333333332  2334557888888888888887 66666555543

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.54  E-value=1.3e-12  Score=118.53  Aligned_cols=164  Identities=18%  Similarity=0.151  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 018582           92 WTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQV  171 (353)
Q Consensus        92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  171 (353)
                      ...++.|...|.+.|++++|++.|++..+..+. +..+|..+...|.+.|++++|++.|++..+..+. +...|..+..+
T Consensus         9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~   86 (723)
T 4gyw_A            9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT   86 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence            344444444444444444444444444443322 3444444444444444444444444444443321 33344444444


Q ss_pred             HHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHH
Q 018582          172 LVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLA  251 (353)
Q Consensus       172 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a  251 (353)
                      +...|++++|.+.|++..+..+. +...|+.+..+|...|++++|++.|++..+.... +...+..+...+...|++++|
T Consensus        87 l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A  164 (723)
T 4gyw_A           87 LKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDY  164 (723)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHH
Confidence            44555555555555444444322 4444445555555555555555555554443211 334444455555555555555


Q ss_pred             HHHHHHHH
Q 018582          252 VDCLEKAI  259 (353)
Q Consensus       252 ~~~~~~~~  259 (353)
                      .+.++++.
T Consensus       165 ~~~~~kal  172 (723)
T 4gyw_A          165 DERMKKLV  172 (723)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44444443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.53  E-value=3.2e-12  Score=96.43  Aligned_cols=130  Identities=15%  Similarity=0.034  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 018582          129 AYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYA  208 (353)
Q Consensus       129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  208 (353)
                      ++..+...+...|++++|.+.++++.+..+ .+...+..+...+...|++++|.+.++++.+..+ .+...+..+...+.
T Consensus        44 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~  121 (186)
T 3as5_A           44 VALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALD  121 (186)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHH
Confidence            333333444444444444444444333321 1233333344444444444444444444433321 13334444444444


Q ss_pred             hcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 018582          209 KEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDT  261 (353)
Q Consensus       209 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  261 (353)
                      ..|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.
T Consensus       122 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  173 (186)
T 3as5_A          122 NLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL  173 (186)
T ss_dssp             HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            4444444444444444332 113344444444444444444444444444443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.52  E-value=2.5e-12  Score=96.98  Aligned_cols=166  Identities=18%  Similarity=0.093  Sum_probs=147.1

Q ss_pred             cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 018582           56 SYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLIT  135 (353)
Q Consensus        56 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  135 (353)
                      ...+..+...+...|++++|...++++.+.  .+.+..++..+...+...|++++|...++++.+..+. +...+..+..
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~   84 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDA--DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGL   84 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCT--TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence            345777888899999999999999999876  4667888999999999999999999999999876543 7788999999


Q ss_pred             HHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHH
Q 018582          136 LYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLEN  215 (353)
Q Consensus       136 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  215 (353)
                      .+...|++++|.+.++++....+ .+...+..+...+...|++++|...+++..+..+ .+...+..+...+...|++++
T Consensus        85 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~  162 (186)
T 3as5_A           85 TYVQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEE  162 (186)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHH
Confidence            99999999999999999988755 4677888999999999999999999999988764 378899999999999999999


Q ss_pred             HHHHHHHHHhc
Q 018582          216 AEELKERARRR  226 (353)
Q Consensus       216 a~~~~~~~~~~  226 (353)
                      |...+++..+.
T Consensus       163 A~~~~~~~~~~  173 (186)
T 3as5_A          163 ALPHFKKANEL  173 (186)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHc
Confidence            99999998765

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.52  E-value=1.9e-12  Score=117.52  Aligned_cols=161  Identities=12%  Similarity=0.035  Sum_probs=75.1

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 018582           58 TYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLY  137 (353)
Q Consensus        58 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  137 (353)
                      +|+.+..++.+.|++++|+..|++..+.  .+-+..++..+..+|.+.|++++|+..|++..+..+. +..+|..+...|
T Consensus        11 al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~l   87 (723)
T 4gyw_A           11 SLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTL   87 (723)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence            4444444444444444444444444443  2333444444444444444444444444444443322 344444444444


Q ss_pred             HccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHH
Q 018582          138 GQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAE  217 (353)
Q Consensus       138 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~  217 (353)
                      ...|++++|++.|++..+..+. +...|..+..++...|++++|.+.|++..+..+. +...+..+..+|...|++++|.
T Consensus        88 ~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A~  165 (723)
T 4gyw_A           88 KEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDYD  165 (723)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHHH
Confidence            4455555555554444443321 3344444445555555555555555554444322 3444455555555555555554


Q ss_pred             HHHHHH
Q 018582          218 ELKERA  223 (353)
Q Consensus       218 ~~~~~~  223 (353)
                      +.+++.
T Consensus       166 ~~~~ka  171 (723)
T 4gyw_A          166 ERMKKL  171 (723)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444443

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.51  E-value=1.6e-11  Score=103.69  Aligned_cols=261  Identities=13%  Similarity=0.004  Sum_probs=187.9

Q ss_pred             hHHHHHHHHHHHhcCCCCCch----hHHHHHHHHHhcCCcchHHHHHHHHHHCCC-CCCc----chHHHHHHHHHhcCCh
Q 018582            2 TEKAEALLEKMKELNLGFSSM----PFNSLMTLYAKTGHPEKIPAIIQEMKASSI-MPDS----YTYNVWMRALAAVNDI   72 (353)
Q Consensus         2 ~~~A~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~p~~----~~~~~ll~~~~~~~~~   72 (353)
                      +++|.+.++.........+..    +++.+...+...|++++|.+.+++.....- .++.    .++..+...+...|++
T Consensus        30 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~  109 (373)
T 1hz4_A           30 PDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFL  109 (373)
T ss_dssp             HHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCH
Confidence            578899998877654222222    466777888899999999999998865310 1111    2356677788999999


Q ss_pred             hHHHHHHHHHHHcCC---CC--C-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCC----CHHHHHHHHHHHHccCC
Q 018582           73 SGAERVIEEMKRDGR---VA--A-DWTTFSNLASIYVEAGLFEKAERALKELENRNAHR----DLSAYQFLITLYGQTGN  142 (353)
Q Consensus        73 ~~a~~~~~~~~~~~~---~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~  142 (353)
                      ++|...+++..+...   ..  | ....+..+...+...|++++|...+++........    ...++..+...+...|+
T Consensus       110 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~  189 (373)
T 1hz4_A          110 QTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGD  189 (373)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCC
Confidence            999999998876310   11  2 34566778899999999999999999986643321    24567888899999999


Q ss_pred             HHHHHHHHHHHHHhCCCCCh-hHHH-----HHHHHHHhcCChhHHHHHHHHHHhcCCCC---cHHHHHHHHHHHHhcCCh
Q 018582          143 LSEVYRIWRSLRLAFPNTAN-ISYL-----NMIQVLVNLKDLPGAEKCFKEWESGCATY---DIRVTNVMIGAYAKEGRL  213 (353)
Q Consensus       143 ~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~  213 (353)
                      +++|...+++.......++. ..+.     ..+..+...|++++|...+++.......+   ....+..+...+...|++
T Consensus       190 ~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~  269 (373)
T 1hz4_A          190 LDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEF  269 (373)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCH
Confidence            99999999998765222221 1222     23344779999999999999987644321   133567788899999999


Q ss_pred             HHHHHHHHHHHhc----CCCCCh-hhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582          214 ENAEELKERARRR----GADPNA-KTWEIFSDYYLRNGDMKLAVDCLEKAIDTG  262 (353)
Q Consensus       214 ~~a~~~~~~~~~~----~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  262 (353)
                      ++|...+++....    |..++. ..+..+...+...|+.++|...+++.....
T Consensus       270 ~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~  323 (373)
T 1hz4_A          270 EPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA  323 (373)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence            9999999987642    211222 356667788889999999999999987753

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.50  E-value=4.1e-11  Score=103.78  Aligned_cols=273  Identities=16%  Similarity=0.120  Sum_probs=185.6

Q ss_pred             HHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcc---hHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHH
Q 018582            3 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPE---KIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVI   79 (353)
Q Consensus         3 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~---~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~   79 (353)
                      ++|++.|+...+.|.   ...+..|...|...+..+   ++.+.+......|   +...+..+...+...+.++.+....
T Consensus        91 ~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a  164 (452)
T 3e4b_A           91 HEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDV  164 (452)
T ss_dssp             HHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHH
T ss_pred             HHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHH
Confidence            455555555555432   224445555554433322   2333333333322   3444555555565556444444332


Q ss_pred             HHHHHcCCCCCcHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcc----CCHHHHHHHHHH
Q 018582           80 EEMKRDGRVAADWTTFSNLASIYVEAG---LFEKAERALKELENRNAHRDLSAYQFLITLYGQT----GNLSEVYRIWRS  152 (353)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~  152 (353)
                      ..+.+.- ...+...+..|...|.+.|   +.++|++.|++..+.|.. +...+..+...|...    +++++|++.|++
T Consensus       165 ~~~~~~a-~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~  242 (452)
T 3e4b_A          165 ERICKAA-LNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEK  242 (452)
T ss_dssp             HHHHHHH-TTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHH
T ss_pred             HHHHHHH-HcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence            2222211 1223337778999999999   999999999999888754 666667777777665    799999999999


Q ss_pred             HHHhCCCCChhHHHHHHHH-H--HhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC-----ChHHHHHHHHHHH
Q 018582          153 LRLAFPNTANISYLNMIQV-L--VNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEG-----RLENAEELKERAR  224 (353)
Q Consensus       153 ~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~a~~~~~~~~  224 (353)
                      .. .   -+...+..+... +  ...+++++|...|++..+.|   +...+..|...|. .|     ++++|...|++..
T Consensus       243 aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa  314 (452)
T 3e4b_A          243 IA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV  314 (452)
T ss_dssp             HG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred             Hc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence            86 3   345566666666 4  46899999999999999877   6677788888887 55     9999999999877


Q ss_pred             hcCCCCChhhHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHh----cCChhhHHHHH
Q 018582          225 RRGADPNAKTWEIFSDYYLR----NGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQ----EKDVDGAEGFL  296 (353)
Q Consensus       225 ~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~  296 (353)
                       .|   +...+..+...|..    ..++++|.++|++..+.|         +......|...|..    ..+.++|..++
T Consensus       315 -~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---------~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~  381 (452)
T 3e4b_A          315 -GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---------QNSADFAIAQLFSQGKGTKPDPLNAYVFS  381 (452)
T ss_dssp             -TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---------CTTHHHHHHHHHHSCTTBCCCHHHHHHHH
T ss_pred             -CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---------hHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence             43   66777777777766    449999999999999876         23445566666654    46899999999


Q ss_pred             HHHHhcCC
Q 018582          297 EILKKAVD  304 (353)
Q Consensus       297 ~~~~~~~~  304 (353)
                      +...+.|.
T Consensus       382 ~~A~~~g~  389 (452)
T 3e4b_A          382 QLAKAQDT  389 (452)
T ss_dssp             HHHHTTCC
T ss_pred             HHHHHCCC
Confidence            99998887

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.50  E-value=2e-12  Score=104.58  Aligned_cols=210  Identities=13%  Similarity=0.118  Sum_probs=112.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcc------C-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHh-----CC-
Q 018582           92 WTTFSNLASIYVEAGLFEKAERALKELENRN------A-HRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLA-----FP-  158 (353)
Q Consensus        92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-  158 (353)
                      ..++..+...|...|++++|...+++.....      - +....++..+...|...|++++|.+.+++....     +. 
T Consensus        43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  122 (283)
T 3edt_B           43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF  122 (283)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence            4445555555556666666665555554321      1 112345555566666666666666666655433     11 


Q ss_pred             -CCChhHHHHHHHHHHhcCChhHHHHHHHHHHhc------C-CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----
Q 018582          159 -NTANISYLNMIQVLVNLKDLPGAEKCFKEWESG------C-ATYDIRVTNVMIGAYAKEGRLENAEELKERARRR----  226 (353)
Q Consensus       159 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----  226 (353)
                       .....++..+...+...|++++|...+++..+.      + .+....++..+...|...|++++|...+++..+.    
T Consensus       123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~  202 (283)
T 3edt_B          123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK  202 (283)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence             112345566666666777777777776665543      1 1223556777778888888888888888777643    


Q ss_pred             ---CCCCCh-hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 018582          227 ---GADPNA-KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKA  302 (353)
Q Consensus       227 ---~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  302 (353)
                         ...+.. ..+..+...+...+....+.. +..+...-............++..+...|...|++++|...+++..+.
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             HSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             cCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence               112222 233333333333333222222 111111100000001123567888999999999999999999987653

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.49  E-value=9.1e-13  Score=106.58  Aligned_cols=152  Identities=14%  Similarity=0.062  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHC------CC-CCCcchHHHHHHHHHhcCChhHH
Q 018582            3 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKAS------SI-MPDSYTYNVWMRALAAVNDISGA   75 (353)
Q Consensus         3 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~~-~p~~~~~~~ll~~~~~~~~~~~a   75 (353)
                      ++|+++++.....+.+....++..+...|...|++++|...+++..+.      +- +....++..+..++...|++++|
T Consensus        25 ~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  104 (283)
T 3edt_B           25 KQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEA  104 (283)
T ss_dssp             HHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHH
Confidence            344444444443332233455666666666666666666666665442      11 11233455555566666666666


Q ss_pred             HHHHHHHHHc------CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------c-CCCCHHHHHHHHHHHHccCC
Q 018582           76 ERVIEEMKRD------GRVAADWTTFSNLASIYVEAGLFEKAERALKELENR------N-AHRDLSAYQFLITLYGQTGN  142 (353)
Q Consensus        76 ~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~  142 (353)
                      ...+++..+.      ...+....++..+...|...|++++|...+++....      . .+....++..+...|...|+
T Consensus       105 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  184 (283)
T 3edt_B          105 EPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGK  184 (283)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC
Confidence            6666655543      101222444555555666666666666666555432      0 01123445555555555555


Q ss_pred             HHHHHHHHHHHH
Q 018582          143 LSEVYRIWRSLR  154 (353)
Q Consensus       143 ~~~a~~~~~~~~  154 (353)
                      +++|...+++..
T Consensus       185 ~~~A~~~~~~~l  196 (283)
T 3edt_B          185 YQDAETLYKEIL  196 (283)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            555555555544

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.49  E-value=1.7e-11  Score=96.01  Aligned_cols=197  Identities=16%  Similarity=0.064  Sum_probs=157.1

Q ss_pred             CCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHH
Q 018582           54 PDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFL  133 (353)
Q Consensus        54 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  133 (353)
                      .|+..+......+...|++++|...|++..+.. .+++...+..+..++...|++++|+..+++.....+. +..+|..+
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l   82 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT-NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGK   82 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHH
Confidence            456788888999999999999999999999974 2278888888999999999999999999999887654 67789999


Q ss_pred             HHHHHccCCHHHHHHHHHHHHHhCCCCCh-------hHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--cHHHHHHHH
Q 018582          134 ITLYGQTGNLSEVYRIWRSLRLAFPNTAN-------ISYLNMIQVLVNLKDLPGAEKCFKEWESGCATY--DIRVTNVMI  204 (353)
Q Consensus       134 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li  204 (353)
                      ...|...|++++|++.+++..+..+. +.       ..|..+...+...|++++|...|++..+.. +.  +...+..+.
T Consensus        83 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~  160 (228)
T 4i17_A           83 SAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLG  160 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHH
Confidence            99999999999999999999887653 34       457888889999999999999999999864 22  356777788


Q ss_pred             HHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582          205 GAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG  262 (353)
Q Consensus       205 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  262 (353)
                      .+|...|     ...++++...+ ..+...|....  ....+.+++|+..+++..+..
T Consensus       161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~  210 (228)
T 4i17_A          161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS  210 (228)
T ss_dssp             HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence            8876544     34455555543 22344444433  234567899999999999987

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.46  E-value=9.2e-12  Score=101.46  Aligned_cols=175  Identities=10%  Similarity=0.043  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC---C--ChhHHHHHHHHHHhc-CChhHHHHHHHHHHhcCCC---C--c
Q 018582          128 SAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN---T--ANISYLNMIQVLVNL-KDLPGAEKCFKEWESGCAT---Y--D  196 (353)
Q Consensus       128 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~---~--~  196 (353)
                      .+|+.+...|...|++++|+..|++..+....   +  -..++..+...|... |++++|...|++..+..+.   +  .
T Consensus        78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~  157 (292)
T 1qqe_A           78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS  157 (292)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence            34555555555555555555555554332110   0  023566677777775 8888888888776643211   0  1


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChh------hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCc
Q 018582          197 IRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAK------TWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWV  270 (353)
Q Consensus       197 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~------~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  270 (353)
                      ..++..+...|.+.|++++|...|++..+........      .|..+..++...|++++|...+++..+....  ....
T Consensus       158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~  235 (292)
T 1qqe_A          158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPN--FADS  235 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CCCc
Confidence            3567888889999999999999999988754332221      4677778888999999999999998775411  0000


Q ss_pred             ccHHHHHHHHHHHH--hcCChhhHHHHHHHHHhcCC
Q 018582          271 PSSETIRTFMRHFE--QEKDVDGAEGFLEILKKAVD  304 (353)
Q Consensus       271 ~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~  304 (353)
                      .....+..++.++.  ..+++++|...|+.+...++
T Consensus       236 ~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~  271 (292)
T 1qqe_A          236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK  271 (292)
T ss_dssp             --HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHH
Confidence            01223455566664  34567777777766555443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.44  E-value=1.3e-11  Score=104.54  Aligned_cols=232  Identities=8%  Similarity=-0.054  Sum_probs=174.6

Q ss_pred             HHHHHHHhcCCcchHHHHHHHHHHCCC-CCC----cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-----cHHHH
Q 018582           26 SLMTLYAKTGHPEKIPAIIQEMKASSI-MPD----SYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAA-----DWTTF   95 (353)
Q Consensus        26 ~ll~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~   95 (353)
                      .....+...|++++|++.|++..+... .++    ..++..+...+...|+++.|...+++..+.....+     ...++
T Consensus       106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  185 (378)
T 3q15_A          106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL  185 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence            345567789999999999999876411 122    34678888999999999999999998876321111     24577


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHccC----C-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-----hCCCCChhHH
Q 018582           96 SNLASIYVEAGLFEKAERALKELENRNA----H-RDLSAYQFLITLYGQTGNLSEVYRIWRSLRL-----AFPNTANISY  165 (353)
Q Consensus        96 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~  165 (353)
                      +.+..+|...|++++|...+++..+...    . ....++..+...|...|++++|++.+++..+     ..+ ....++
T Consensus       186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~  264 (378)
T 3q15_A          186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD-LLPKVL  264 (378)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG-GHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh-hHHHHH
Confidence            8899999999999999999998755311    1 1245788889999999999999999999876     333 236678


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhcC----CCCcHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCCCC-hhhHHH
Q 018582          166 LNMIQVLVNLKDLPGAEKCFKEWESGC----ATYDIRVTNVMIGAYAKEGR---LENAEELKERARRRGADPN-AKTWEI  237 (353)
Q Consensus       166 ~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~p~-~~~~~~  237 (353)
                      ..+...+.+.|++++|...+++..+..    .+.....+..+...|...++   +.+|...+++.   +..|+ ...+..
T Consensus       265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~  341 (378)
T 3q15_A          265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARS  341 (378)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHH
Confidence            889999999999999999999987532    12233455666667777788   77777777762   22222 346677


Q ss_pred             HHHHHHccCChHHHHHHHHHHHHc
Q 018582          238 FSDYYLRNGDMKLAVDCLEKAIDT  261 (353)
Q Consensus       238 li~~~~~~~~~~~a~~~~~~~~~~  261 (353)
                      +...|...|++++|.+.|++..+.
T Consensus       342 la~~y~~~g~~~~A~~~~~~al~~  365 (378)
T 3q15_A          342 AAAVFESSCHFEQAAAFYRKVLKA  365 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHH
Confidence            889999999999999999998764

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.44  E-value=2.3e-11  Score=99.04  Aligned_cols=236  Identities=9%  Similarity=0.021  Sum_probs=168.1

Q ss_pred             HHHHHHHHHHHhcCCCCCchhHHHHHHHHHhc--C-CcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHH
Q 018582            3 EKAEALLEKMKELNLGFSSMPFNSLMTLYAKT--G-HPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVI   79 (353)
Q Consensus         3 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~--~-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~   79 (353)
                      .+|.+++.+-.+.- +++...| .+   + +.  + ++++|.+.|++.               ...+...|++++|...|
T Consensus         2 ~~a~~~~~~a~k~~-~~~~~~~-~~---~-~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~   60 (292)
T 1qqe_A            2 SDPVELLKRAEKKG-VPSSGFM-KL---F-SGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSF   60 (292)
T ss_dssp             CCHHHHHHHHHHHS-SCCCTHH-HH---H-SCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHH
T ss_pred             CcHHHHHHHHHHHh-CcCCCcc-hh---c-CCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHH
Confidence            45677777766542 1222223 22   2 32  2 488888888876               34677899999999999


Q ss_pred             HHHHHc----CCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCC-C----HHHHHHHHHHHHcc-CCHHHHHH
Q 018582           80 EEMKRD----GRVAAD-WTTFSNLASIYVEAGLFEKAERALKELENRNAHR-D----LSAYQFLITLYGQT-GNLSEVYR  148 (353)
Q Consensus        80 ~~~~~~----~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~-~~~~~a~~  148 (353)
                      .+..+.    | .++. ..+|+.+..+|.+.|++++|+..+++........ +    ..+++.+...|... |++++|+.
T Consensus        61 ~~al~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~  139 (292)
T 1qqe_A           61 LKAADYQKKAG-NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAID  139 (292)
T ss_dssp             HHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHhC-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHH
Confidence            987763    2 2222 5688999999999999999999999876532211 1    45788899999996 99999999


Q ss_pred             HHHHHHHhCCCC-C----hhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcH------HHHHHHHHHHHhcCChHHHH
Q 018582          149 IWRSLRLAFPNT-A----NISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDI------RVTNVMIGAYAKEGRLENAE  217 (353)
Q Consensus       149 ~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~a~  217 (353)
                      .|++..+..+.. +    ..++..+...+...|++++|...|++..+..+....      ..|..+..++...|++++|.
T Consensus       140 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~  219 (292)
T 1qqe_A          140 CYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAA  219 (292)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            999976643211 1    346888899999999999999999999876544322      15777888999999999999


Q ss_pred             HHHHHHHhcCCCCCh------hhHHHHHHHHH--ccCChHHHHHHHHHHHHcC
Q 018582          218 ELKERARRRGADPNA------KTWEIFSDYYL--RNGDMKLAVDCLEKAIDTG  262 (353)
Q Consensus       218 ~~~~~~~~~~~~p~~------~~~~~li~~~~--~~~~~~~a~~~~~~~~~~~  262 (353)
                      ..|++..+.  .|+.      ..+..++.++.  ..+++++|++.|+.+....
T Consensus       220 ~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~  270 (292)
T 1qqe_A          220 RTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD  270 (292)
T ss_dssp             HHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred             HHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccH
Confidence            999998764  3332      13444556664  4567888888887765543

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.42  E-value=2.4e-10  Score=91.63  Aligned_cols=188  Identities=12%  Similarity=0.007  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCC-CCChhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 018582          111 AERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFP-NTANISYLNMIQVLVNLKDLPGAEKCFKEWE  189 (353)
Q Consensus       111 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  189 (353)
                      |+..|+++...+ .++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus        85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            555666555433 23444455666666666777777776666554443 1244455666666666666666666666665


Q ss_pred             hcCC---CCcHHHHHHHHHHH--HhcC--ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582          190 SGCA---TYDIRVTNVMIGAY--AKEG--RLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG  262 (353)
Q Consensus       190 ~~~~---~~~~~~~~~li~~~--~~~g--~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  262 (353)
                      +...   ..+..+...+..++  ...|  ++++|..+|+++.+.  .|+..+-..++.++.+.|++++|.+.++.+.+..
T Consensus       164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~  241 (310)
T 3mv2_B          164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY  241 (310)
T ss_dssp             HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred             hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            5421   00233344444442  2223  666666666666543  4543344444556666666666666666555431


Q ss_pred             CCCCCCC----cccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 018582          263 RGDGGKW----VPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD  304 (353)
Q Consensus       263 ~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  304 (353)
                      ..... .    ..++.++..+|......|+  .|.++++++.+..|
T Consensus       242 p~~~~-k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P  284 (310)
T 3mv2_B          242 YSVEQ-KENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH  284 (310)
T ss_dssp             HHTTT-CHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred             ccccc-cccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence            00000 0    1244555455555555554  56666666666655

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.42  E-value=1.7e-10  Score=92.51  Aligned_cols=147  Identities=12%  Similarity=0.071  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 018582           75 AERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNA-HRDLSAYQFLITLYGQTGNLSEVYRIWRSL  153 (353)
Q Consensus        75 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  153 (353)
                      |...|++....+  +++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.++.|
T Consensus        85 a~~~l~~l~~~~--~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~  162 (310)
T 3mv2_B           85 NIEELENLLKDK--QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY  162 (310)
T ss_dssp             CCHHHHHTTTTS--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            556666665542  34444555677777777777777777777655543 124556667777777777777777777777


Q ss_pred             HHhCC---CCChhHHHHHHHHHH--hcC--ChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 018582          154 RLAFP---NTANISYLNMIQVLV--NLK--DLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARR  225 (353)
Q Consensus       154 ~~~~~---~~~~~~~~~l~~~~~--~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  225 (353)
                      .+..+   ..+..+...+..++.  ..|  +..+|..+|+++.+..  |+......++.++.+.|++++|.+.++.+.+
T Consensus       163 ~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~  239 (310)
T 3mv2_B          163 TNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLS  239 (310)
T ss_dssp             HHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred             HhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            66532   012444455554422  223  7777777777776543  2322223334467777777777777776554

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.38  E-value=7.3e-11  Score=94.46  Aligned_cols=187  Identities=11%  Similarity=-0.007  Sum_probs=123.4

Q ss_pred             CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCC-C-CHHH
Q 018582           55 DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAAD---WTTFSNLASIYVEAGLFEKAERALKELENRNAH-R-DLSA  129 (353)
Q Consensus        55 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~  129 (353)
                      +...+......+.+.|++++|...|+++.+..  +.+   ...+..+..+|.+.|++++|...|++..+..+. | ...+
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a   91 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA   91 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence            34556666667777788888888888877752  333   566677777788888888888888887765432 1 2345


Q ss_pred             HHHHHHHHHc--------cCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHH
Q 018582          130 YQFLITLYGQ--------TGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTN  201 (353)
Q Consensus       130 ~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  201 (353)
                      +..+..++..        .|++++|+..|+++....+. +.........              +..+...    ....+.
T Consensus        92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~--------------~~~~~~~----~~~~~~  152 (261)
T 3qky_A           92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQK--------------IRELRAK----LARKQY  152 (261)
T ss_dssp             HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHH--------------HHHHHHH----HHHHHH
T ss_pred             HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHH--------------HHHHHHH----HHHHHH
Confidence            6666667776        77778888877777766432 1222211110              0000000    112245


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhcCCCC--ChhhHHHHHHHHHcc----------CChHHHHHHHHHHHHcC
Q 018582          202 VMIGAYAKEGRLENAEELKERARRRGADP--NAKTWEIFSDYYLRN----------GDMKLAVDCLEKAIDTG  262 (353)
Q Consensus       202 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~li~~~~~~----------~~~~~a~~~~~~~~~~~  262 (353)
                      .+...|.+.|++++|...|+++.+..+..  ....+..+..+|...          |++++|...++++++..
T Consensus       153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~  225 (261)
T 3qky_A          153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF  225 (261)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence            67888999999999999999998763221  234667777777765          88999999999999986

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.35  E-value=1.2e-10  Score=89.77  Aligned_cols=126  Identities=13%  Similarity=0.010  Sum_probs=80.2

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC
Q 018582          133 LITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGR  212 (353)
Q Consensus       133 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  212 (353)
                      +...|.+.|++++|+..|++..+..+ -+...+..+..++...|++++|...|++..+..+. +..++..+..+|...|+
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~  137 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKAP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAE  137 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhH
Confidence            66777777777777777777777654 25667777777777777777777777777776543 66677777776655443


Q ss_pred             --hHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582          213 --LENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG  262 (353)
Q Consensus       213 --~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  262 (353)
                        .+.+...+.....  ..|....+.....++...|++++|+..|++.++..
T Consensus       138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~  187 (208)
T 3urz_A          138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF  187 (208)
T ss_dssp             HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence              3344444544432  12222233344555566778888888888887765

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.34  E-value=4.3e-09  Score=85.21  Aligned_cols=232  Identities=10%  Similarity=0.048  Sum_probs=126.3

Q ss_pred             hHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHccCCCCHHHHHHHHHHH----Hcc---CCH
Q 018582           73 SGAERVIEEMKRDGRVAADWTTFSNLASIYVEAG--LFEKAERALKELENRNAHRDLSAYQFLITLY----GQT---GNL  143 (353)
Q Consensus        73 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~  143 (353)
                      ++|+.+++.++..  .+-+..+|+.--.++...|  +++++++.++.+....+. +..+|+.-...+    ...   +++
T Consensus        50 ~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~  126 (306)
T 3dra_A           50 ERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDP  126 (306)
T ss_dssp             HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred             HHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCH
Confidence            4555555555554  3444455555555555555  566666666665555443 344444333333    233   455


Q ss_pred             HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChh--HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC------hHH
Q 018582          144 SEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLP--GAEKCFKEWESGCATYDIRVTNVMIGAYAKEGR------LEN  215 (353)
Q Consensus       144 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------~~~  215 (353)
                      ++++++++.+.+..++ +-.+|+.-.-.+.+.|.++  ++.+.++++.+..+. |...|+.-...+.+.++      +++
T Consensus       127 ~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~e  204 (306)
T 3dra_A          127 YREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDE  204 (306)
T ss_dssp             HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred             HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHH
Confidence            6666666666555442 4455555555555555555  666666666655533 55555555444444444      666


Q ss_pred             HHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHH-HHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHH
Q 018582          216 AEELKERARRRGADPNAKTWEIFSDYYLRNGDMKL-AVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEG  294 (353)
Q Consensus       216 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  294 (353)
                      +++.++++....+. |...|+.+-..+.+.|+... +.++..++...+..    -..+...+..+...+.+.|+.++|.+
T Consensus       205 El~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~al~~la~~~~~~~~~~~A~~  279 (306)
T 3dra_A          205 ELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKD----QVTSSFALETLAKIYTQQKKYNESRT  279 (306)
T ss_dssp             HHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGT----EESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCC----CCCCHHHHHHHHHHHHccCCHHHHHH
Confidence            66666666655432 55666666666655555333 33454444433200    01355666677777777777777777


Q ss_pred             HHHHHHh-cCCCCChhhhHHHH
Q 018582          295 FLEILKK-AVDDLGVEVFEPLI  315 (353)
Q Consensus       295 ~~~~~~~-~~~~~~~~~~~~l~  315 (353)
                      +++.+.+ .+| .....|+..+
T Consensus       280 ~~~~l~~~~Dp-ir~~yW~~~~  300 (306)
T 3dra_A          280 VYDLLKSKYNP-IRSNFWDYQI  300 (306)
T ss_dssp             HHHHHHHTTCG-GGHHHHHHHH
T ss_pred             HHHHHHhccCh-HHHHHHHHHH
Confidence            7777665 455 5555555443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.34  E-value=1.4e-10  Score=82.28  Aligned_cols=128  Identities=14%  Similarity=0.114  Sum_probs=59.0

Q ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHH
Q 018582           24 FNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYV  103 (353)
Q Consensus        24 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  103 (353)
                      |..+...+...|++++|.++++++.+.+ +.+...+..+...+...|++++|...++++.+.  .+.+...+..+...+.
T Consensus         4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~   80 (136)
T 2fo7_A            4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHH
Confidence            4444444555555555555555544432 223334444444444555555555555554443  2333444444444455


Q ss_pred             hcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 018582          104 EAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRL  155 (353)
Q Consensus       104 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  155 (353)
                      ..|++++|.+.++++....+. +..++..+...+...|++++|...++++..
T Consensus        81 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  131 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALE  131 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence            555555555555444443221 334444444444444445444444444433

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.33  E-value=3e-10  Score=90.89  Aligned_cols=187  Identities=13%  Similarity=-0.031  Sum_probs=129.5

Q ss_pred             CCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCC----cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CcHH
Q 018582           19 FSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPD----SYTYNVWMRALAAVNDISGAERVIEEMKRDGRVA-ADWT   93 (353)
Q Consensus        19 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~   93 (353)
                      .+...+..+...+.+.|++++|++.|+++.+..  |+    ...+..+..++.+.|++++|...|+++.+..+.. ....
T Consensus        13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~   90 (261)
T 3qky_A           13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ   90 (261)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence            456678888889999999999999999998863  44    4577888899999999999999999999863112 2355


Q ss_pred             HHHHHHHHHHh--------cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHH
Q 018582           94 TFSNLASIYVE--------AGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISY  165 (353)
Q Consensus        94 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  165 (353)
                      .+..+..++..        .|++++|...|+++....+. +......+.              .+..+...    -...+
T Consensus        91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~--------------~~~~~~~~----~~~~~  151 (261)
T 3qky_A           91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQ--------------KIRELRAK----LARKQ  151 (261)
T ss_dssp             HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHH--------------HHHHHHHH----HHHHH
T ss_pred             HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHH--------------HHHHHHHH----HHHHH
Confidence            67788889988        99999999999999886544 222222211              11111100    01124


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhcCCCC--cHHHHHHHHHHHHhc----------CChHHHHHHHHHHHhc
Q 018582          166 LNMIQVLVNLKDLPGAEKCFKEWESGCATY--DIRVTNVMIGAYAKE----------GRLENAEELKERARRR  226 (353)
Q Consensus       166 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~  226 (353)
                      ..+...+.+.|++++|...|+++.+..+..  ....+..+..+|...          |++++|...|+++.+.
T Consensus       152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~  224 (261)
T 3qky_A          152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI  224 (261)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence            456666777777777777777776553321  234566666666655          7777788777777765

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.33  E-value=1.1e-10  Score=106.38  Aligned_cols=173  Identities=12%  Similarity=0.040  Sum_probs=147.4

Q ss_pred             HhcCChhHHHHHHHHHH--------HcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 018582           67 AAVNDISGAERVIEEMK--------RDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYG  138 (353)
Q Consensus        67 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  138 (353)
                      ...|++++|.+.+++..        +.  .+.+...+..+...+.+.|++++|...|++..+..+. +...|..+...+.
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~  478 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVD--FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAEL  478 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------C--CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccc--cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHH
Confidence            67899999999999998        53  4666788889999999999999999999999887655 7889999999999


Q ss_pred             ccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHH
Q 018582          139 QTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEE  218 (353)
Q Consensus       139 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  218 (353)
                      ..|++++|++.|++..+..+. +...+..+..++.+.|++++ .+.|++..+..+. +...|..+..++.+.|++++|.+
T Consensus       479 ~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~  555 (681)
T 2pzi_A          479 LTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVR  555 (681)
T ss_dssp             HHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999999999887653 56788899999999999999 9999999988754 78899999999999999999999


Q ss_pred             HHHHHHhcCCCCC-hhhHHHHHHHHHccCC
Q 018582          219 LKERARRRGADPN-AKTWEIFSDYYLRNGD  247 (353)
Q Consensus       219 ~~~~~~~~~~~p~-~~~~~~li~~~~~~~~  247 (353)
                      .|++..+.  .|+ ...+..+..++...++
T Consensus       556 ~~~~al~l--~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          556 TLDEVPPT--SRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred             HHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence            99998875  344 5667777777766554

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.32  E-value=4e-10  Score=79.85  Aligned_cols=127  Identities=17%  Similarity=0.167  Sum_probs=61.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 018582           96 SNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNL  175 (353)
Q Consensus        96 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  175 (353)
                      ..+...+...|++++|..+++++....+. +...+..+...+...|++++|...++++....+ .+...+..+...+...
T Consensus         5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~   82 (136)
T 2fo7_A            5 YNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQ   82 (136)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHh
Confidence            33444444445555555555444443222 344444444444455555555555555444432 2333444445555555


Q ss_pred             CChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 018582          176 KDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARR  225 (353)
Q Consensus       176 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  225 (353)
                      |++++|.+.++++.+..+ .+...+..+...+...|++++|...++++.+
T Consensus        83 ~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  131 (136)
T 2fo7_A           83 GDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE  131 (136)
T ss_dssp             TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence            555555555555544432 2344455555555555555555555555544

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.31  E-value=3.4e-10  Score=87.22  Aligned_cols=132  Identities=14%  Similarity=0.057  Sum_probs=87.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 018582           98 LASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKD  177 (353)
Q Consensus        98 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  177 (353)
                      +..+|.+.|++++|...|++..+..+. +..++..+...+...|++++|+..|++..+..+ .+..++..+..++...|+
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~  137 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLTAE  137 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhH
Confidence            777888888888888888888776554 677788888888888888888888888877655 355677777777655543


Q ss_pred             --hhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhH
Q 018582          178 --LPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTW  235 (353)
Q Consensus       178 --~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~  235 (353)
                        .+.+...++....  +.|....+.....++...|++++|...|++..+.  .|+....
T Consensus       138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~  193 (208)
T 3urz_A          138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQ  193 (208)
T ss_dssp             HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHH
T ss_pred             HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHH
Confidence              3344455554432  2333334444555666678888888888888765  5565433

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.31  E-value=1.9e-11  Score=88.85  Aligned_cols=143  Identities=10%  Similarity=0.102  Sum_probs=103.9

Q ss_pred             HHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChH
Q 018582          170 QVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMK  249 (353)
Q Consensus       170 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~  249 (353)
                      ..+...|++++|.+.++......+. +...+..+...|.+.|++++|.+.|++..+..+. +..+|..+...|...|+++
T Consensus         5 ~~~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~   82 (150)
T 4ga2_A            5 SMRRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTD   82 (150)
T ss_dssp             --CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchH
Confidence            3444556777777777776654322 4455566778888888888888888888776432 5677888888888888888


Q ss_pred             HHHHHHHHHHHcCCCCCCCCcc-cHHHHHHHHHHHHhcCChhhHHHH-HHHHHhcCCCCChhhhHHHHHHHHHcCC
Q 018582          250 LAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGF-LEILKKAVDDLGVEVFEPLIRTYAAAGR  323 (353)
Q Consensus       250 ~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~  323 (353)
                      +|+..|++.++..        | +...+..+...|.+.|++++|.+. +++..+..| .++.+|......+...|+
T Consensus        83 ~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P-~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           83 KAVECYRRSVELN--------PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP-GSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST-TCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCc
Confidence            8888888888876        4 467788888888888888776654 577888887 778888877777777664

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.29  E-value=1.1e-10  Score=106.25  Aligned_cols=174  Identities=13%  Similarity=0.110  Sum_probs=148.5

Q ss_pred             HhcCCcchHHHHHHHHH--------HCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHH
Q 018582           32 AKTGHPEKIPAIIQEMK--------ASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYV  103 (353)
Q Consensus        32 ~~~~~~~~a~~~~~~m~--------~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  103 (353)
                      ...|++++|++.+++..        +. -+.+...+..+..++...|++++|...|+++.+.  .+.+...+..+..++.
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~  478 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAEL  478 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHH
Confidence            77899999999999998        43 2445678888899999999999999999999997  5678889999999999


Q ss_pred             hcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHH
Q 018582          104 EAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEK  183 (353)
Q Consensus       104 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  183 (353)
                      +.|++++|...|++..+..+. +...|..+...+.+.|++++ ++.|++..+..+ .+...|..+..++.+.|++++|.+
T Consensus       479 ~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~  555 (681)
T 2pzi_A          479 LTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVR  555 (681)
T ss_dssp             HHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999999999887665 67889999999999999999 999999988765 366789999999999999999999


Q ss_pred             HHHHHHhcCCCCcHHHHHHHHHHHHhcCC
Q 018582          184 CFKEWESGCATYDIRVTNVMIGAYAKEGR  212 (353)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~  212 (353)
                      .|++..+..+. +...+..+..++...++
T Consensus       556 ~~~~al~l~P~-~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          556 TLDEVPPTSRH-FTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred             HHHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence            99999877643 57778778888766554

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.29  E-value=1.5e-09  Score=84.60  Aligned_cols=188  Identities=9%  Similarity=-0.002  Sum_probs=118.6

Q ss_pred             cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCH--HHHHH
Q 018582           56 SYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAA-DWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDL--SAYQF  132 (353)
Q Consensus        56 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~  132 (353)
                      ...+..+...+...|++++|...|+++.+..+..| ....+..+..+|.+.|++++|+..|+++.+..+....  .++..
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~   83 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM   83 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence            34555666777888888888888888887531122 1356677888888888888888888888776544221  24444


Q ss_pred             HHHHHHc------------------cCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 018582          133 LITLYGQ------------------TGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCAT  194 (353)
Q Consensus       133 l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  194 (353)
                      +..++..                  .|++++|+..|+++.+..+. +...+......          ..+...+      
T Consensus        84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~------  146 (225)
T 2yhc_A           84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRL------  146 (225)
T ss_dssp             HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHH------
T ss_pred             HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHH------
Confidence            4444443                  34566666666666554321 11111111000          0000000      


Q ss_pred             CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582          195 YDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPN--AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG  262 (353)
Q Consensus       195 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  262 (353)
                        ......+...|.+.|++++|...|+++.+..+...  ...+..+..++.+.|++++|.+.++.+...+
T Consensus       147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~  214 (225)
T 2yhc_A          147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS  214 (225)
T ss_dssp             --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred             --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence              01123466778899999999999999987632211  2467788899999999999999999988876

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.27  E-value=1.4e-09  Score=84.79  Aligned_cols=187  Identities=17%  Similarity=0.122  Sum_probs=124.1

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCh--hHHH
Q 018582           91 DWTTFSNLASIYVEAGLFEKAERALKELENRNAHRD--LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTAN--ISYL  166 (353)
Q Consensus        91 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~  166 (353)
                      +...+..+...+.+.|++++|...|+++....+...  ..++..+..+|.+.|++++|+..|+++.+..+....  ..+.
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            344556677888899999999999999987654322  357788888999999999999999998887654222  2444


Q ss_pred             HHHHHHHh------------------cCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 018582          167 NMIQVLVN------------------LKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGA  228 (353)
Q Consensus       167 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~  228 (353)
                      .+..++..                  .|++++|...|+++.+..+. +...+.......          .+...+     
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~----------~~~~~~-----  146 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLV----------FLKDRL-----  146 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHH----------HHHHHH-----
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHH----------HHHHHH-----
Confidence            45555543                  34455555555555544322 222221111000          000000     


Q ss_pred             CCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc----HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 018582          229 DPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS----SETIRTFMRHFEQEKDVDGAEGFLEILKKAVD  304 (353)
Q Consensus       229 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  304 (353)
                         ......+...|.+.|++++|+..|+++++..        |+    ...+..+..++.+.|++++|.+.++.+...++
T Consensus       147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--------p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~  215 (225)
T 2yhc_A          147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--------PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS  215 (225)
T ss_dssp             ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--------TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred             ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--------cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence               0011245667888999999999999999886        43    35788889999999999999999999888776

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.27  E-value=1.2e-10  Score=87.20  Aligned_cols=158  Identities=12%  Similarity=0.067  Sum_probs=72.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHH-HHhcC
Q 018582           98 LASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQV-LVNLK  176 (353)
Q Consensus        98 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~  176 (353)
                      +...+.+.|++++|...|++..+..+. +...+..+...+...|++++|+..+++.....+  +...+...... +...+
T Consensus        12 ~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~~   88 (176)
T 2r5s_A           12 QVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQQA   88 (176)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHhhc
Confidence            344444445555555555444333222 344444444445555555555555444433222  22111111111 11112


Q ss_pred             ChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHccCChHHHHHHH
Q 018582          177 DLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADP-NAKTWEIFSDYYLRNGDMKLAVDCL  255 (353)
Q Consensus       177 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~  255 (353)
                      ....+...+++..+..+. +...+..+...+...|++++|...|+++.+..+.+ +...+..+...+...|+.++|...|
T Consensus        89 ~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y  167 (176)
T 2r5s_A           89 AESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY  167 (176)
T ss_dssp             TSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred             ccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence            222345555555544322 45555556666666666666666666655543222 2335555556666666666666665


Q ss_pred             HHHH
Q 018582          256 EKAI  259 (353)
Q Consensus       256 ~~~~  259 (353)
                      ++.+
T Consensus       168 ~~al  171 (176)
T 2r5s_A          168 RRQL  171 (176)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5544

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.27  E-value=7.4e-10  Score=89.83  Aligned_cols=169  Identities=11%  Similarity=0.015  Sum_probs=137.9

Q ss_pred             CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChh-HHH
Q 018582           88 VAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANI-SYL  166 (353)
Q Consensus        88 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~  166 (353)
                      .+.+...+..+...+.+.|++++|...|++.....+. +..++..+...+...|++++|...++++....+  +.. ...
T Consensus       113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p--~~~~~~~  189 (287)
T 3qou_A          113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ--DTRYQGL  189 (287)
T ss_dssp             SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC--SHHHHHH
T ss_pred             cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc--chHHHHH
Confidence            4566677788889999999999999999999887665 778899999999999999999999998866544  333 233


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHcc
Q 018582          167 NMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADP-NAKTWEIFSDYYLRN  245 (353)
Q Consensus       167 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~  245 (353)
                      .....+...++.+.|...+++.....+. +...+..+...+...|++++|...|.++.+..... +...+..++..+...
T Consensus       190 ~~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~  268 (287)
T 3qou_A          190 VAQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL  268 (287)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence            3334466778888899999998887644 78899999999999999999999999999864331 256788999999999


Q ss_pred             CChHHHHHHHHHHHH
Q 018582          246 GDMKLAVDCLEKAID  260 (353)
Q Consensus       246 ~~~~~a~~~~~~~~~  260 (353)
                      |+.++|...+++.+.
T Consensus       269 g~~~~a~~~~r~al~  283 (287)
T 3qou_A          269 GTGDALASXYRRQLY  283 (287)
T ss_dssp             CTTCHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHH
Confidence            999999998887654

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.26  E-value=1.6e-08  Score=81.97  Aligned_cols=223  Identities=10%  Similarity=0.030  Sum_probs=178.6

Q ss_pred             HhcCCc-chHHHHHHHHHHCCCCCCc-chHHHHHHHHHhcC--ChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHH----H
Q 018582           32 AKTGHP-EKIPAIIQEMKASSIMPDS-YTYNVWMRALAAVN--DISGAERVIEEMKRDGRVAADWTTFSNLASIY----V  103 (353)
Q Consensus        32 ~~~~~~-~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~----~  103 (353)
                      .+.|.+ ++|+++++.+...  .|+. ..|+.--.++...+  ++++++.+++.+...  .+-+..+|+.-...+    .
T Consensus        43 ~~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--nPk~y~aW~~R~~iL~~~~~  118 (306)
T 3dra_A           43 MKAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD--NEKNYQIWNYRQLIIGQIME  118 (306)
T ss_dssp             HHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--CTTCCHHHHHHHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--CcccHHHHHHHHHHHHHHHH
Confidence            344544 6899999999985  3554 46788778888888  999999999999997  466666676554444    4


Q ss_pred             hc---CCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHH--HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC-
Q 018582          104 EA---GLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLS--EVYRIWRSLRLAFPNTANISYLNMIQVLVNLKD-  177 (353)
Q Consensus       104 ~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-  177 (353)
                      ..   +++++++.+++.+.+..+. +..+|+.-.-.+.+.|.++  ++++.++++.+..+. |-..|+.-...+...+. 
T Consensus       119 ~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~  196 (306)
T 3dra_A          119 LNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHL  196 (306)
T ss_dssp             HTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGG
T ss_pred             hccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccc
Confidence            55   7899999999999987765 8889988888888889888  999999999998764 77788877777777776 


Q ss_pred             -----hhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHH-HHHHHHHHHhcC--CCCChhhHHHHHHHHHccCChH
Q 018582          178 -----LPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLEN-AEELKERARRRG--ADPNAKTWEIFSDYYLRNGDMK  249 (353)
Q Consensus       178 -----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~~--~~p~~~~~~~li~~~~~~~~~~  249 (353)
                           ++++.+.++++....+. |...|+-+-..+.+.|+... +..+..++.+.+  -..+...+..+...|.+.|+.+
T Consensus       197 ~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~  275 (306)
T 3dra_A          197 ATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYN  275 (306)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHH
T ss_pred             chhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHH
Confidence                 88899999999988755 89999999888888887544 556777665532  1336678889999999999999


Q ss_pred             HHHHHHHHHHHc
Q 018582          250 LAVDCLEKAIDT  261 (353)
Q Consensus       250 ~a~~~~~~~~~~  261 (353)
                      +|.++++.+.+.
T Consensus       276 ~A~~~~~~l~~~  287 (306)
T 3dra_A          276 ESRTVYDLLKSK  287 (306)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhc
Confidence            999999999873

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.24  E-value=1.1e-10  Score=84.82  Aligned_cols=108  Identities=18%  Similarity=0.142  Sum_probs=48.0

Q ss_pred             cCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHH
Q 018582           69 VNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYR  148 (353)
Q Consensus        69 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  148 (353)
                      .|++++|+..++.....  .+.+...+..+...|.+.|++++|++.|++..+..+. +..+|..+...|...|++++|+.
T Consensus        10 ~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~   86 (150)
T 4ga2_A           10 KADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAVE   86 (150)
T ss_dssp             HHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHHH
Confidence            34444444444444332  1222223334444455555555555555544443332 44444444445555555555555


Q ss_pred             HHHHHHHhCCCCChhHHHHHHHHHHhcCChhH
Q 018582          149 IWRSLRLAFPNTANISYLNMIQVLVNLKDLPG  180 (353)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  180 (353)
                      .|++..+..+. +..++..+...+.+.|++++
T Consensus        87 ~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~  117 (150)
T 4ga2_A           87 CYRRSVELNPT-QKDLVLKIAELLCKNDVTDG  117 (150)
T ss_dssp             HHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSS
T ss_pred             HHHHHHHhCCC-CHHHHHHHHHHHHHcCChHH
Confidence            55544444321 33344444444444444443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.24  E-value=3.8e-10  Score=84.43  Aligned_cols=161  Identities=14%  Similarity=0.005  Sum_probs=94.4

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHH-H
Q 018582           59 YNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITL-Y  137 (353)
Q Consensus        59 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~  137 (353)
                      +......+...|++++|...|++..+.  .+.+...+..+..++.+.|++++|...+++.....+  +...+..+... +
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~   84 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLEL   84 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHH
Confidence            444455566666666666666666654  344556666666666666777777666666654433  33222222111 1


Q ss_pred             HccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHhcCChHHH
Q 018582          138 GQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATY-DIRVTNVMIGAYAKEGRLENA  216 (353)
Q Consensus       138 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a  216 (353)
                      ...+...+|+..+++..+..+ .+...+..+..++...|++++|...|+++.+..+.+ +...+..+...+...|+.++|
T Consensus        85 ~~~~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A  163 (176)
T 2r5s_A           85 HQQAAESPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI  163 (176)
T ss_dssp             HHHHTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred             HhhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence            122223345666666665543 245566667777777777777777777776655432 345666677777777777777


Q ss_pred             HHHHHHHH
Q 018582          217 EELKERAR  224 (353)
Q Consensus       217 ~~~~~~~~  224 (353)
                      ...|++..
T Consensus       164 ~~~y~~al  171 (176)
T 2r5s_A          164 ASKYRRQL  171 (176)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77776654

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.23  E-value=6.6e-10  Score=90.12  Aligned_cols=168  Identities=10%  Similarity=-0.076  Sum_probs=138.5

Q ss_pred             CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHH-H
Q 018582           53 MPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAY-Q  131 (353)
Q Consensus        53 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~  131 (353)
                      +.+...+..+...+...|++++|...|++..+.  .+.+...+..+...+.+.|++++|...++++....+  +.... .
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p--~~~~~~~  189 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ--DTRYQGL  189 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC--SHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc--chHHHHH
Confidence            445567777888899999999999999999987  567788899999999999999999999999876544  43332 2


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHhc
Q 018582          132 FLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATY-DIRVTNVMIGAYAKE  210 (353)
Q Consensus       132 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~  210 (353)
                      .....+...++.++|...+++.....+ .+...+..+...+...|++++|...+.++.+..+.. +...+..++..|...
T Consensus       190 ~~~~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~  268 (287)
T 3qou_A          190 VAQIELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL  268 (287)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence            333346677888889999999888765 467788899999999999999999999999876542 377899999999999


Q ss_pred             CChHHHHHHHHHHHh
Q 018582          211 GRLENAEELKERARR  225 (353)
Q Consensus       211 g~~~~a~~~~~~~~~  225 (353)
                      |+.++|...|++...
T Consensus       269 g~~~~a~~~~r~al~  283 (287)
T 3qou_A          269 GTGDALASXYRRQLY  283 (287)
T ss_dssp             CTTCHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHH
Confidence            999999999887653

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.20  E-value=4.6e-09  Score=81.03  Aligned_cols=176  Identities=12%  Similarity=0.037  Sum_probs=114.3

Q ss_pred             HHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC----ChhHHHHHHH
Q 018582          111 AERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLK----DLPGAEKCFK  186 (353)
Q Consensus       111 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~  186 (353)
                      |++.|++..+.   -++.++..+...|...+++++|++.|++..+.+   +...+..+...|.. +    ++++|...|+
T Consensus         5 A~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~   77 (212)
T 3rjv_A            5 PGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE   77 (212)
T ss_dssp             TTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence            44555555443   245556666666666666666666666665543   33445555555555 4    6666777777


Q ss_pred             HHHhcCCCCcHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCC-CChhhHHHHHHHHHc----cCChHHHHHHHHH
Q 018582          187 EWESGCATYDIRVTNVMIGAYAK----EGRLENAEELKERARRRGAD-PNAKTWEIFSDYYLR----NGDMKLAVDCLEK  257 (353)
Q Consensus       187 ~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~-p~~~~~~~li~~~~~----~~~~~~a~~~~~~  257 (353)
                      +..+.+   +...+..|...|..    .+++++|...|++..+.|.. .+...+..|...|..    .+++++|+++|++
T Consensus        78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~  154 (212)
T 3rjv_A           78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG  154 (212)
T ss_dssp             HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred             HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence            666554   44566666666665    66778888888877766421 015667777777776    7788899999988


Q ss_pred             HHHcCCCCCCCCcccHHHHHHHHHHHHhc-C-----ChhhHHHHHHHHHhcCC
Q 018582          258 AIDTGRGDGGKWVPSSETIRTFMRHFEQE-K-----DVDGAEGFLEILKKAVD  304 (353)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~~  304 (353)
                      ..+.+        .+...+..|...|... |     ++++|...|++..+.|.
T Consensus       155 A~~~~--------~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          155 SSSLS--------RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HHHTS--------CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHcC--------CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            88773        3445666777777653 2     78899999988888776

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.20  E-value=8.9e-10  Score=98.49  Aligned_cols=154  Identities=11%  Similarity=0.017  Sum_probs=103.8

Q ss_pred             cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHH
Q 018582          105 AGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKC  184 (353)
Q Consensus       105 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  184 (353)
                      .|++++|...+++..+..+. +...|..+...+...|++++|.+.|++..+..+ .+...+..+..++...|++++|.+.
T Consensus         2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            46778888888887665443 567788888888888888888888888777654 3566777788888888888888888


Q ss_pred             HHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHcc---CChHHHHHHHHHHHHc
Q 018582          185 FKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRN---GDMKLAVDCLEKAIDT  261 (353)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~~  261 (353)
                      +++..+..+. +...+..+..+|...|++++|.+.|++..+... .+...+..+...+...   |++++|.+.+++..+.
T Consensus        80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A           80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            8888776533 677778888888888888888888888777632 2566777777788877   8888888888888877


Q ss_pred             C
Q 018582          262 G  262 (353)
Q Consensus       262 ~  262 (353)
                      +
T Consensus       158 ~  158 (568)
T 2vsy_A          158 G  158 (568)
T ss_dssp             T
T ss_pred             C
Confidence            6

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.19  E-value=1.4e-09  Score=97.21  Aligned_cols=153  Identities=8%  Similarity=0.010  Sum_probs=82.5

Q ss_pred             CCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 018582           35 GHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERA  114 (353)
Q Consensus        35 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  114 (353)
                      |++++|.+.|++..+.. +.+...|..+...+...|++++|...|++..+.  .+.+...+..+..+|...|++++|.+.
T Consensus         3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            55666666666665532 223455666666666666666666666666664  344556666666666666666666666


Q ss_pred             HHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc---CChhHHHHHHHHHHhc
Q 018582          115 LKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNL---KDLPGAEKCFKEWESG  191 (353)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~  191 (353)
                      +++..+..+. +...+..+...|...|++++|.+.|++..+..+ .+...+..+..++...   |+.++|.+.+++..+.
T Consensus        80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A           80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            6666555433 455666666666666666666666666655543 2345555666666666   6666666666666555


Q ss_pred             C
Q 018582          192 C  192 (353)
Q Consensus       192 ~  192 (353)
                      +
T Consensus       158 ~  158 (568)
T 2vsy_A          158 G  158 (568)
T ss_dssp             T
T ss_pred             C
Confidence            4

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.18  E-value=1.1e-09  Score=89.90  Aligned_cols=230  Identities=10%  Similarity=0.103  Sum_probs=144.1

Q ss_pred             cCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 018582           34 TGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAER  113 (353)
Q Consensus        34 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  113 (353)
                      .|++++|.+++++..+.. +..   +      +...++++.|...|.+.                ...|...|++++|..
T Consensus         4 ~~~~~eA~~~~~~a~k~~-~~~---~------~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~   57 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYL-KTS---F------MKWKPDYDSAASEYAKA----------------AVAFKNAKQLEQAKD   57 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHH-CCC---S------SSCSCCHHHHHHHHHHH----------------HHHHHHTTCHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHc-ccc---c------cCCCCCHHHHHHHHHHH----------------HHHHHHcCCHHHHHH
Confidence            466777888887776531 111   0      00135566666555543                456667788888888


Q ss_pred             HHHHHHHccCC-----CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCC---CCC--hhHHHHHHHHHHhcCChhHHHH
Q 018582          114 ALKELENRNAH-----RDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFP---NTA--NISYLNMIQVLVNLKDLPGAEK  183 (353)
Q Consensus       114 ~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~~~~~~a~~  183 (353)
                      .|.+.......     .-..+|+.+...|...|++++|+..|++..+...   .+.  ..++..+..+|.. |++++|..
T Consensus        58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~  136 (307)
T 2ifu_A           58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH  136 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence            88776442211     1134677778888888888888888887654311   111  2466777778877 88999988


Q ss_pred             HHHHHHhcCCC-----CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCCC-hhhHHHHHHHHHccCChHHHHH
Q 018582          184 CFKEWESGCAT-----YDIRVTNVMIGAYAKEGRLENAEELKERARRR----GADPN-AKTWEIFSDYYLRNGDMKLAVD  253 (353)
Q Consensus       184 ~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~~~~~~a~~  253 (353)
                      .|++.......     ....+++.+...|.+.|++++|...|++..+.    +..+. ...+..+...+...|++++|..
T Consensus       137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~  216 (307)
T 2ifu_A          137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK  216 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            88886643211     11467788888999999999999999887753    11111 2256666677778899999999


Q ss_pred             HHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHH
Q 018582          254 CLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEG  294 (353)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  294 (353)
                      .|++.. ....  ............++.++ ..|+.+.+..
T Consensus       217 ~~~~al-~~p~--~~~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          217 CVRESY-SIPG--FSGSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             HHHHHT-TSTT--STTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HHHHHh-CCCC--CCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence            999988 5311  00001123445555555 5667665555

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.14  E-value=1.1e-08  Score=78.97  Aligned_cols=176  Identities=11%  Similarity=0.026  Sum_probs=94.3

Q ss_pred             hHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcC----CHHHHHHH
Q 018582           39 KIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAG----LFEKAERA  114 (353)
Q Consensus        39 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~  114 (353)
                      +|++.|++..+.|   +...+..+...+...+++++|...|++..+.|    +...+..|...|.. +    ++++|.+.
T Consensus         4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g----~~~a~~~lg~~y~~-~g~~~~~~~A~~~   75 (212)
T 3rjv_A            4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG----DGDALALLAQLKIR-NPQQADYPQARQL   75 (212)
T ss_dssp             CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred             hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence            3555555555543   45555555555555666666666666665543    23444445555555 4    56666666


Q ss_pred             HHHHHHccCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHhCCC-CChhHHHHHHHHHHh----cCChhHHHHHH
Q 018582          115 LKELENRNAHRDLSAYQFLITLYGQ----TGNLSEVYRIWRSLRLAFPN-TANISYLNMIQVLVN----LKDLPGAEKCF  185 (353)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~  185 (353)
                      |++..+.+   +..++..|...|..    .+++++|+++|++..+.+.. .+...+..+...|..    .+++++|...|
T Consensus        76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~  152 (212)
T 3rjv_A           76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF  152 (212)
T ss_dssp             HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred             HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence            66655432   44455555555555    55666666666665544321 013455555555555    55666666666


Q ss_pred             HHHHhcCCCCcHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHHhcC
Q 018582          186 KEWESGCATYDIRVTNVMIGAYAKE-G-----RLENAEELKERARRRG  227 (353)
Q Consensus       186 ~~~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~a~~~~~~~~~~~  227 (353)
                      ++..+.+  .+...+..|...|... |     ++++|...|+...+.|
T Consensus       153 ~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          153 KGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             HHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            6655541  1233444555555432 2     5666666666665554

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.13  E-value=2.3e-08  Score=89.93  Aligned_cols=233  Identities=9%  Similarity=0.007  Sum_probs=142.3

Q ss_pred             HHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHH-HHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 018582            5 AEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIP-AIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMK   83 (353)
Q Consensus         5 A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~   83 (353)
                      +..+|++...... .+...|-..+..+...|+.++|. ++|++.... ++.+...|...+...-+.|+++.|.++|+.+.
T Consensus       328 v~~~Ye~aL~~~p-~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l  405 (679)
T 4e6h_A          328 MTYVYMQAAQHVC-FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCI  405 (679)
T ss_dssp             HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            3456666665432 45666777777777777777775 777777653 33444455566666777777878887777776


Q ss_pred             HcCC--------CCC------------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcc-CC
Q 018582           84 RDGR--------VAA------------DWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQT-GN  142 (353)
Q Consensus        84 ~~~~--------~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~  142 (353)
                      ....        ..|            ...+|...+....+.|+.+.|..+|....+..+......|...+..-.+. ++
T Consensus       406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d  485 (679)
T 4e6h_A          406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKD  485 (679)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSC
T ss_pred             HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCC
Confidence            5310        012            12356666676677777777777777776641112233333332222233 44


Q ss_pred             HHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--CcHHHHHHHHHHHHhcCChHHHHHHH
Q 018582          143 LSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCAT--YDIRVTNVMIGAYAKEGRLENAEELK  220 (353)
Q Consensus       143 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~  220 (353)
                      .+.|.++|+...+.-+ -+...+...+......|+.+.|..+|++......+  -....|...+..-.+.|+.+.+.++.
T Consensus       486 ~e~Ar~ife~~Lk~~p-~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~  564 (679)
T 4e6h_A          486 TKTACKVLELGLKYFA-TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLE  564 (679)
T ss_dssp             CHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCC-CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            7777777777666522 24445556666666777777777777777765432  23456777777777777777777777


Q ss_pred             HHHHhcCCCCChhhHHHHHHHH
Q 018582          221 ERARRRGADPNAKTWEIFSDYY  242 (353)
Q Consensus       221 ~~~~~~~~~p~~~~~~~li~~~  242 (353)
                      +++.+.  .|+......+++-|
T Consensus       565 ~R~~~~--~P~~~~~~~f~~ry  584 (679)
T 4e6h_A          565 KRFFEK--FPEVNKLEEFTNKY  584 (679)
T ss_dssp             HHHHHH--STTCCHHHHHHHHT
T ss_pred             HHHHHh--CCCCcHHHHHHHHh
Confidence            777765  34444444454444

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.13  E-value=1.4e-08  Score=91.44  Aligned_cols=233  Identities=10%  Similarity=0.034  Sum_probs=179.4

Q ss_pred             hHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHH-HHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018582           39 KIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAE-RVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKE  117 (353)
Q Consensus        39 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  117 (353)
                      .+..+|++.... ++-+...|...+..+...|+.++|. .+|++....  .+.+...+...+...-+.|+++.|.++|+.
T Consensus       327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~--~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek  403 (679)
T 4e6h_A          327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC--IPNSAVLAFSLSEQYELNTKIPEIETTILS  403 (679)
T ss_dssp             HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            355678888775 4556778888888888999999997 999999886  677777788899999999999999999999


Q ss_pred             HHHccC---------CCC------------HHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc-
Q 018582          118 LENRNA---------HRD------------LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNL-  175 (353)
Q Consensus       118 ~~~~~~---------~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-  175 (353)
                      +.....         .|+            ...|...+....+.|..+.|..+|....+..+.+....|...+..-.+. 
T Consensus       404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~  483 (679)
T 4e6h_A          404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHIS  483 (679)
T ss_dssp             HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhC
Confidence            876421         132            3368888888888999999999999988761222334454433333444 


Q ss_pred             CChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC--ChhhHHHHHHHHHccCChHHHHH
Q 018582          176 KDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADP--NAKTWEIFSDYYLRNGDMKLAVD  253 (353)
Q Consensus       176 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~li~~~~~~~~~~~a~~  253 (353)
                      ++.+.|.++|+...+.- +.+...+...++.....|+.+.|..+|++.......+  ....|...+..-.+.|+.+.+.+
T Consensus       484 ~d~e~Ar~ife~~Lk~~-p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~  562 (679)
T 4e6h_A          484 KDTKTACKVLELGLKYF-ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT  562 (679)
T ss_dssp             SCCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred             CCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            45899999999998874 3467778888998889999999999999998764322  34578888888889999999999


Q ss_pred             HHHHHHHcCCCCCCCCcccHHHHHHHHHHH
Q 018582          254 CLEKAIDTGRGDGGKWVPSSETIRTFMRHF  283 (353)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  283 (353)
                      +.+++.+.-        |+......++.-|
T Consensus       563 v~~R~~~~~--------P~~~~~~~f~~ry  584 (679)
T 4e6h_A          563 LEKRFFEKF--------PEVNKLEEFTNKY  584 (679)
T ss_dssp             HHHHHHHHS--------TTCCHHHHHHHHT
T ss_pred             HHHHHHHhC--------CCCcHHHHHHHHh
Confidence            999999986        6655555555554

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.08  E-value=5.6e-09  Score=85.57  Aligned_cols=225  Identities=14%  Similarity=0.069  Sum_probs=157.2

Q ss_pred             hcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHH
Q 018582           68 AVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVY  147 (353)
Q Consensus        68 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  147 (353)
                      ..|++++|.+++++..+..  +..      +   +...++++.|...|.+.               ...|...|++++|.
T Consensus         3 ~~~~~~eA~~~~~~a~k~~--~~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~   56 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYL--KTS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK   56 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHH--CCC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHc--ccc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence            3577888999888887752  221      0   11157888888887765               45677889999999


Q ss_pred             HHHHHHHHhCCC---C--ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcC---CCC--cHHHHHHHHHHHHhcCChHHHH
Q 018582          148 RIWRSLRLAFPN---T--ANISYLNMIQVLVNLKDLPGAEKCFKEWESGC---ATY--DIRVTNVMIGAYAKEGRLENAE  217 (353)
Q Consensus       148 ~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~--~~~~~~~li~~~~~~g~~~~a~  217 (353)
                      ..|.+..+....   +  -..+|..+..+|...|++++|...+++.....   -.+  -..+++.+...|.. |++++|.
T Consensus        57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~  135 (307)
T 2ifu_A           57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV  135 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence            999987554211   1  13478888999999999999999999876421   112  24677888899988 9999999


Q ss_pred             HHHHHHHhcCCCC-----ChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc-HHHHHHHHHHHHhcCChhh
Q 018582          218 ELKERARRRGADP-----NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDG  291 (353)
Q Consensus       218 ~~~~~~~~~~~~p-----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~  291 (353)
                      ..|++..+.....     ...++..+...|.+.|++++|++.|++..+......  ..+. ...+..+..++...|++++
T Consensus       136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~g~~~~~~g~~~~  213 (307)
T 2ifu_A          136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME--NYPTCYKKCIAQVLVQLHRADYVA  213 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHHHHHcCCHHH
Confidence            9999877531110     145788889999999999999999999887531000  0111 2366677778888899999


Q ss_pred             HHHHHHHHHhcCCCCC-h---hhhHHHHHHHHHcCC
Q 018582          292 AEGFLEILKKAVDDLG-V---EVFEPLIRTYAAAGR  323 (353)
Q Consensus       292 a~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~g~  323 (353)
                      |...|++.. ..+... .   .....++.++ ..|+
T Consensus       214 A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d  247 (307)
T 2ifu_A          214 AQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQD  247 (307)
T ss_dssp             HHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTC
T ss_pred             HHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcC
Confidence            999999998 655211 1   1344455555 4454

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.08  E-value=1.2e-08  Score=78.69  Aligned_cols=130  Identities=9%  Similarity=-0.006  Sum_probs=101.0

Q ss_pred             hHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHH
Q 018582           23 PFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIY  102 (353)
Q Consensus        23 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  102 (353)
                      .+..+...+...|++++|++.|++..    .|+...|..+..++...|++++|...|++..+.  .+.+...+..+..+|
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~   81 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLY   81 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHH
Confidence            45566777788888888888887663    567778888888888888888888888888886  466777888888888


Q ss_pred             HhcCCHHHHHHHHHHHHHccCCC---------------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCC
Q 018582          103 VEAGLFEKAERALKELENRNAHR---------------DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFP  158 (353)
Q Consensus       103 ~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  158 (353)
                      ...|++++|...|++..+..+..               ...++..+...|...|++++|.+.|++..+..+
T Consensus        82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  152 (213)
T 1hh8_A           82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS  152 (213)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence            88888888888888887754321               126777788888888888888888888776654

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.07  E-value=1.9e-07  Score=76.45  Aligned_cols=240  Identities=11%  Similarity=0.046  Sum_probs=133.3

Q ss_pred             CChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcc-C-CHHHH
Q 018582           70 NDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAG-LFEKAERALKELENRNAHRDLSAYQFLITLYGQT-G-NLSEV  146 (353)
Q Consensus        70 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a  146 (353)
                      +..++|+++++.+...  .+-+..+|+.--..+...| .+++++..++.+....++ +..+|+.-...+.+. + +++++
T Consensus        68 e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~E  144 (349)
T 3q7a_A           68 EKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSE  144 (349)
T ss_dssp             CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHH
T ss_pred             CCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHH
Confidence            3344566666666654  3445555555555555555 366666666666655444 555555554444444 4 55666


Q ss_pred             HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChh--------HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC------
Q 018582          147 YRIWRSLRLAFPNTANISYLNMIQVLVNLKDLP--------GAEKCFKEWESGCATYDIRVTNVMIGAYAKEGR------  212 (353)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------  212 (353)
                      +++++.+.+..++ |-.+|+.-.-.+.+.+.++        ++.+.++++.+..+. |...|+.....+.+.++      
T Consensus       145 L~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~  222 (349)
T 3q7a_A          145 IEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSR  222 (349)
T ss_dssp             HHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHH
T ss_pred             HHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchH
Confidence            6666666554432 4445544444444444444        666666666665543 66666666665555554      


Q ss_pred             -hHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCh--------------------HHHHHHHHHHHHcCCCCCCCCcc
Q 018582          213 -LENAEELKERARRRGADPNAKTWEIFSDYYLRNGDM--------------------KLAVDCLEKAIDTGRGDGGKWVP  271 (353)
Q Consensus       213 -~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~--------------------~~a~~~~~~~~~~~~~~~~~~~~  271 (353)
                       ++++++.+++.....+. |...|+.+-..+.+.|+.                    ....+....+..... +.....+
T Consensus       223 ~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  300 (349)
T 3q7a_A          223 SLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPL-PEDTPLP  300 (349)
T ss_dssp             HHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CC-CSSCCSC
T ss_pred             HHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccc-ccccCCC
Confidence             56677777666665322 556666555555544443                    122222222221110 0011236


Q ss_pred             cHHHHHHHHHHHHhcCChhhHHHHHHHHH-hcCCCCChhhhHHHHHH
Q 018582          272 SSETIRTFMRHFEQEKDVDGAEGFLEILK-KAVDDLGVEVFEPLIRT  317 (353)
Q Consensus       272 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~  317 (353)
                      +...+..++..|...|+.++|.++++.+. +.++ ....-|+..+..
T Consensus       301 s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dp-ir~~yw~~~~~~  346 (349)
T 3q7a_A          301 VPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQ-MRAGYWEFRRRE  346 (349)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCG-GGHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCh-HHHHHHHHHHHh
Confidence            78889999999999999999999999987 4455 555566655443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.06  E-value=4.6e-08  Score=79.52  Aligned_cols=165  Identities=8%  Similarity=-0.053  Sum_probs=109.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHccCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC-CC----hhHHH
Q 018582           97 NLASIYVEAGLFEKAERALKELENRNAH-RD----LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN-TA----NISYL  166 (353)
Q Consensus        97 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~  166 (353)
                      ..+..+...|++++|...+++....... |+    ...+..+...+...|++++|+..|++....... ++    ..+++
T Consensus        80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~  159 (293)
T 3u3w_A           80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN  159 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence            3466777788888888888877653221 22    113334666677777888888888887764322 22    12577


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHh----c-CCC-CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCCC-hhhH
Q 018582          167 NMIQVLVNLKDLPGAEKCFKEWES----G-CAT-YDIRVTNVMIGAYAKEGRLENAEELKERARRR----GADPN-AKTW  235 (353)
Q Consensus       167 ~l~~~~~~~~~~~~a~~~~~~~~~----~-~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~  235 (353)
                      .+..+|...|++++|...++++.+    . +.. ....++..+...|.+.|++++|...+++..+.    +..+. ..+|
T Consensus       160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~  239 (293)
T 3u3w_A          160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY  239 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence            788888888888888888887763    1 111 12346777888888888888888888876542    11122 4577


Q ss_pred             HHHHHHHHccCC-hHHHHHHHHHHHHc
Q 018582          236 EIFSDYYLRNGD-MKLAVDCLEKAIDT  261 (353)
Q Consensus       236 ~~li~~~~~~~~-~~~a~~~~~~~~~~  261 (353)
                      ..+...+.+.|+ +++|.+.+++....
T Consensus       240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          240 YQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence            778888888884 58888888877654

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.06  E-value=8.1e-08  Score=78.07  Aligned_cols=163  Identities=10%  Similarity=-0.037  Sum_probs=123.7

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHcCCCCCcH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHccCC-CC----HHHHHH
Q 018582           62 WMRALAAVNDISGAERVIEEMKRDGRVAADW----TTFSNLASIYVEAGLFEKAERALKELENRNAH-RD----LSAYQF  132 (353)
Q Consensus        62 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~  132 (353)
                      .+..+...|++++|..++++..+.....|+.    ..+..+...+...|++++|+..+++....... ++    ..+++.
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            4667888999999999999998853233442    23445777788888999999999999874322 22    336899


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHh-----CCCCC-hhHHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCC-cHHHHH
Q 018582          133 LITLYGQTGNLSEVYRIWRSLRLA-----FPNTA-NISYLNMIQVLVNLKDLPGAEKCFKEWESG----CATY-DIRVTN  201 (353)
Q Consensus       133 l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~  201 (353)
                      +...|...|++++|+..|++..+.     +..+. ..++..+...|.+.|++++|...+++..+.    +..+ -..+|.
T Consensus       161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~  240 (293)
T 3u3w_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY  240 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            999999999999999999998742     11111 237788999999999999999999987642    2222 267888


Q ss_pred             HHHHHHHhcCC-hHHHHHHHHHHH
Q 018582          202 VMIGAYAKEGR-LENAEELKERAR  224 (353)
Q Consensus       202 ~li~~~~~~g~-~~~a~~~~~~~~  224 (353)
                      .+..+|.+.|+ +++|.+.+++..
T Consensus       241 ~lg~~~~~~g~~~~~A~~~~~~Al  264 (293)
T 3u3w_A          241 QRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHH
Confidence            99999999995 699999888755

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.05  E-value=1.1e-07  Score=77.34  Aligned_cols=172  Identities=9%  Similarity=-0.002  Sum_probs=120.6

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCh-----hHHHHHHHHHHhcCChhHHHHHHHHHHhcCC---CCc--HH
Q 018582          129 AYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTAN-----ISYLNMIQVLVNLKDLPGAEKCFKEWESGCA---TYD--IR  198 (353)
Q Consensus       129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~  198 (353)
                      .+...+..+...|++++|.+.+.+..+.....+.     ..+..+...+...|++++|...+++......   .+.  ..
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            4455666777788888888888776665332111     1233455667778889999998888775321   111  45


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHH---hcCC-CC--ChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc
Q 018582          199 VTNVMIGAYAKEGRLENAEELKERAR---RRGA-DP--NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS  272 (353)
Q Consensus       199 ~~~~li~~~~~~g~~~~a~~~~~~~~---~~~~-~p--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  272 (353)
                      +++.+...|...|++++|...|++..   +... .+  ...++..+...|...|++++|++++++.++..... .....-
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~-~~~~~~  235 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI-NSMALI  235 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TBCSSH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhc-CcHHHH
Confidence            88889999999999999999999877   2211 11  12578888999999999999999999987653100 000012


Q ss_pred             HHHHHHHHHHHHhcCChhhH-HHHHHHHHh
Q 018582          273 SETIRTFMRHFEQEKDVDGA-EGFLEILKK  301 (353)
Q Consensus       273 ~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~  301 (353)
                      ..++..+..+|.+.|++++| ...+++...
T Consensus       236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            67888999999999999999 777877654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.05  E-value=1.2e-08  Score=71.54  Aligned_cols=111  Identities=14%  Similarity=0.012  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHH
Q 018582          197 IRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETI  276 (353)
Q Consensus       197 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  276 (353)
                      ...+......|.+.|++++|++.|++..+..+ .+...|..+..+|.+.|++++|++.+++.++.+.       .+...|
T Consensus        13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-------~~~~a~   84 (126)
T 4gco_A           13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-------KFIKGY   84 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-------hhhHHH
Confidence            34556666777777777777777777776532 2566777777777777777777777777777651       346677


Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHH
Q 018582          277 RTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIR  316 (353)
Q Consensus       277 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  316 (353)
                      ..+..++...|++++|.+.|++..+.+| .+...+..|..
T Consensus        85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P-~~~~a~~~l~~  123 (126)
T 4gco_A           85 IRKAACLVAMREWSKAQRAYEDALQVDP-SNEEAREGVRN  123 (126)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCc-CCHHHHHHHHH
Confidence            7777777777777777777777777777 66666665544

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.04  E-value=9.2e-07  Score=72.11  Aligned_cols=198  Identities=9%  Similarity=-0.007  Sum_probs=105.8

Q ss_pred             HHHHHHHHHHHHccCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC-hhHHHHHH
Q 018582          109 EKAERALKELENRNAHRDLSAYQFLITLYGQTG--NLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKD-LPGAEKCF  185 (353)
Q Consensus       109 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~  185 (353)
                      ++++.+++.+....+. +..+|+.-...+...+  .+++++++++.+.+..+. |-.+|+.-.-.+...|. ++++.+.+
T Consensus        91 ~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~  168 (331)
T 3dss_A           91 KAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFT  168 (331)
T ss_dssp             HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence            4444444444443333 4444444443444434  244555555555444332 34444444444444444 24455555


Q ss_pred             HHHHhcCCCCcHHHHHHHHHHHHhc--------------CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHcc------
Q 018582          186 KEWESGCATYDIRVTNVMIGAYAKE--------------GRLENAEELKERARRRGADPNAKTWEIFSDYYLRN------  245 (353)
Q Consensus       186 ~~~~~~~~~~~~~~~~~li~~~~~~--------------g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~------  245 (353)
                      +++.+..+. |...|+.....+.+.              +.++++++.+.......+. |...|+-+-..+.+.      
T Consensus       169 ~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~  246 (331)
T 3dss_A          169 DSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCEL  246 (331)
T ss_dssp             HHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGC
T ss_pred             HHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCcccc
Confidence            555544433 444444443333332              3456677777776665322 555665444444333      


Q ss_pred             -----CChHHHHHHHHHHHHcCCCCCCCCcccH-HHHHHHH---HHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHH
Q 018582          246 -----GDMKLAVDCLEKAIDTGRGDGGKWVPSS-ETIRTFM---RHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIR  316 (353)
Q Consensus       246 -----~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  316 (353)
                           +.++++++.++++.+..        |+. ..+..++   ......|..+++...+.++.+.+| ....-|.-+..
T Consensus       247 ~~~~~~~l~~el~~~~elle~~--------pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp-~r~~~y~d~~~  317 (331)
T 3dss_A          247 SVEKSTVLQSELESCKELQELE--------PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP-MRAAYLDDLRS  317 (331)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG-GGHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHhhC--------cccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc-chhhHHHHHHH
Confidence                 35788899999999876        543 2222222   222346777888999999999988 77777777665


Q ss_pred             HHH
Q 018582          317 TYA  319 (353)
Q Consensus       317 ~~~  319 (353)
                      .+.
T Consensus       318 ~~~  320 (331)
T 3dss_A          318 KFL  320 (331)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.04  E-value=5.8e-08  Score=74.78  Aligned_cols=126  Identities=15%  Similarity=0.048  Sum_probs=81.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 018582           96 SNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNL  175 (353)
Q Consensus        96 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  175 (353)
                      ..+...+...|++++|...|++..    .|+..+|..+...|...|++++|++.|++.....+ .+...+..+..++...
T Consensus        10 ~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~~~   84 (213)
T 1hh8_A           10 WNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQT   84 (213)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHc
Confidence            345555666666666666666552    34556666666666666666666666666665543 2445666666666666


Q ss_pred             CChhHHHHHHHHHHhcCCC---------------CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 018582          176 KDLPGAEKCFKEWESGCAT---------------YDIRVTNVMIGAYAKEGRLENAEELKERARRR  226 (353)
Q Consensus       176 ~~~~~a~~~~~~~~~~~~~---------------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  226 (353)
                      |++++|...+++..+..+.               .....+..+..+|...|++++|...|++..+.
T Consensus        85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  150 (213)
T 1hh8_A           85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  150 (213)
T ss_dssp             TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence            6777776666666654322               12266777778888888888888888887765

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.03  E-value=1.7e-06  Score=75.51  Aligned_cols=303  Identities=8%  Similarity=-0.000  Sum_probs=178.4

Q ss_pred             hHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCC-cchHHHHHHHHHHC-CCCC-CcchHHHHHHHHH----hcCChhH
Q 018582            2 TEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGH-PEKIPAIIQEMKAS-SIMP-DSYTYNVWMRALA----AVNDISG   74 (353)
Q Consensus         2 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~-~~~p-~~~~~~~ll~~~~----~~~~~~~   74 (353)
                      ++.|..+|++....-  |++..|...+....+.+. .+....+|+..... |..| +...|...+..+.    ..++.+.
T Consensus        30 ~e~~~~iferal~~~--ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~  107 (493)
T 2uy1_A           30 YRSLESLFGRCLKKS--YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK  107 (493)
T ss_dssp             HHHHHHHHHHHSTTC--CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred             HHHHHHHHHHHhccC--CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence            577888999988743  788999998888777663 46677888887764 4333 4556666665543    2456778


Q ss_pred             HHHHHHHHHHcCCCCCcHHHHHHHHH--------------------------------------------HHHh--cCC-
Q 018582           75 AERVIEEMKRDGRVAADWTTFSNLAS--------------------------------------------IYVE--AGL-  107 (353)
Q Consensus        75 a~~~~~~~~~~~~~~~~~~~~~~l~~--------------------------------------------~~~~--~~~-  107 (353)
                      +..+|++.+... ...-...|.....                                            .|+.  .++ 
T Consensus       108 vR~iy~rAL~~P-~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~  186 (493)
T 2uy1_A          108 IRNGYMRALQTP-MGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENG  186 (493)
T ss_dssp             HHHHHHHHHTSC-CTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCT
T ss_pred             HHHHHHHHHhCh-hhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCC
Confidence            888998888732 1111111111111                                            0000  011 


Q ss_pred             --------HHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChh
Q 018582          108 --------FEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLP  179 (353)
Q Consensus       108 --------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  179 (353)
                              .+.+..+|+++....+. +...|...+..+.+.|+.++|..+|++.... + .+...+.    .|....+.+
T Consensus       187 ~~~~~~~~~~Rv~~~ye~al~~~p~-~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P-~~~~l~~----~y~~~~e~~  259 (493)
T 2uy1_A          187 MKLGGRPHESRMHFIHNYILDSFYY-AEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-S-DGMFLSL----YYGLVMDEE  259 (493)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSSHHHH----HHHHHTTCT
T ss_pred             ccCcchhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-C-CcHHHHH----HHHhhcchh
Confidence                    22344566666554332 4566666677777777777787777777766 2 2222221    122221222


Q ss_pred             HHHHHHHHHHhcC------------CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHc-cC
Q 018582          180 GAEKCFKEWESGC------------ATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLR-NG  246 (353)
Q Consensus       180 ~a~~~~~~~~~~~------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~-~~  246 (353)
                      +.   ++.+.+.-            ......+|...+....+.++.+.|..+|++. .. ...+...|......-.. .+
T Consensus       260 ~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~  334 (493)
T 2uy1_A          260 AV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATG  334 (493)
T ss_dssp             HH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHC
T ss_pred             HH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCC
Confidence            21   22222110            0112245666667776778899999999988 32 12233444322222222 33


Q ss_pred             ChHHHHHHHHHHHHcCCCCCCCCccc-HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCC--
Q 018582          247 DMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR--  323 (353)
Q Consensus       247 ~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--  323 (353)
                      +.+.|..+|+...+..        |+ +..+...+....+.|+.+.|..+|+++    . .....|...+.--...|+  
T Consensus       335 d~~~ar~ife~al~~~--------~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~-k~~~lw~~~~~fE~~~G~~~  401 (493)
T 2uy1_A          335 SRATPYNIFSSGLLKH--------PDSTLLKEEFFLFLLRIGDEENARALFKRL----E-KTSRMWDSMIEYEFMVGSME  401 (493)
T ss_dssp             CSHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----C-CBHHHHHHHHHHHHHHSCHH
T ss_pred             ChHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----H-HHHHHHHHHHHHHHHCCCHH
Confidence            6999999999998874        33 455666777778889999999999986    2 457788888887788888  


Q ss_pred             ChHHHHHHH
Q 018582          324 TSPVMLRRL  332 (353)
Q Consensus       324 ~~~~~~~~m  332 (353)
                      .+.+++++.
T Consensus       402 ~~r~v~~~~  410 (493)
T 2uy1_A          402 LFRELVDQK  410 (493)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            334555443

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.01  E-value=5.6e-07  Score=73.71  Aligned_cols=226  Identities=11%  Similarity=0.070  Sum_probs=169.8

Q ss_pred             HHHHhcCCcchHHHHHHHHHHCCCCCC-cchHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhc-
Q 018582           29 TLYAKTGHPEKIPAIIQEMKASSIMPD-SYTYNVWMRALAAVN-DISGAERVIEEMKRDGRVAADWTTFSNLASIYVEA-  105 (353)
Q Consensus        29 ~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-  105 (353)
                      ....+.+..++|+++++++...+  |+ ..+|+.--.++...+ ++++++.+++.+...  .+-+..+|+.-...+.+. 
T Consensus        62 ~~~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~--nPKny~aW~hR~wlL~~l~  137 (349)
T 3q7a_A           62 AIAAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ--NLKSYQVWHHRLLLLDRIS  137 (349)
T ss_dssp             HHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHC
T ss_pred             HHHHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhc
Confidence            33444556678999999999854  54 446777777777788 599999999999987  677888888877777776 


Q ss_pred             C-CHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHH--------HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 018582          106 G-LFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLS--------EVYRIWRSLRLAFPNTANISYLNMIQVLVNLK  176 (353)
Q Consensus       106 ~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  176 (353)
                      + ++++++++++.+.+..+. +..+|+.-.-.+.+.|.++        ++++.++++.+..+ -|...|+.....+.+.+
T Consensus       138 ~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~  215 (349)
T 3q7a_A          138 PQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRP  215 (349)
T ss_dssp             CSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTST
T ss_pred             CCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcc
Confidence            6 889999999999887655 7888877666666666666        89999999998876 47788888888888877


Q ss_pred             C-------hhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCh--------------------HHHHHHHHHHHhcC--
Q 018582          177 D-------LPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRL--------------------ENAEELKERARRRG--  227 (353)
Q Consensus       177 ~-------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~~~~~~--  227 (353)
                      .       ++++.+.+++.....+. |...|+-+-..+.+.|+.                    ........++...+  
T Consensus       216 ~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (349)
T 3q7a_A          216 GAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLP  294 (349)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCC
T ss_pred             ccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccc
Confidence            6       67888899888887755 888888877777776654                    23333333333221  


Q ss_pred             ---CCCChhhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 018582          228 ---ADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDT  261 (353)
Q Consensus       228 ---~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  261 (353)
                         -.+....+..+++.|...|+.++|.++++.+.+.
T Consensus       295 ~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~  331 (349)
T 3q7a_A          295 EDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE  331 (349)
T ss_dssp             SSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             cccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence               1346677888999999999999999999998755

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.01  E-value=3.3e-08  Score=68.68  Aligned_cols=116  Identities=19%  Similarity=0.229  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHH
Q 018582          197 IRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETI  276 (353)
Q Consensus       197 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  276 (353)
                      ...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|..+++++.+...       .+..++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~   80 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-------NNAEAW   80 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-------ccHHHH
Confidence            4566666677777777777777777766553 22456666777777777777777777777776641       345666


Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHc
Q 018582          277 RTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAA  321 (353)
Q Consensus       277 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  321 (353)
                      ..+...+...|++++|...++++.+..+ .+...+..+...+.+.
T Consensus        81 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~  124 (125)
T 1na0_A           81 YNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAKQKQ  124 (125)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHhc
Confidence            7777777777777777777777777666 5666666666665544

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.99  E-value=2.8e-08  Score=69.59  Aligned_cols=95  Identities=13%  Similarity=0.114  Sum_probs=40.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 018582           95 FSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVN  174 (353)
Q Consensus        95 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  174 (353)
                      +......|.+.|++++|+..|++..+..+. +..+|..+..+|.+.|++++|++.|++..+..+ .+...|..+..++..
T Consensus        16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~   93 (126)
T 4gco_A           16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAACLVA   93 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHH
Confidence            333444444444444444444444433322 344444444444444444444444444443322 123334444444444


Q ss_pred             cCChhHHHHHHHHHHhc
Q 018582          175 LKDLPGAEKCFKEWESG  191 (353)
Q Consensus       175 ~~~~~~a~~~~~~~~~~  191 (353)
                      .|++++|.+.|++..+.
T Consensus        94 ~~~~~~A~~~~~~al~l  110 (126)
T 4gco_A           94 MREWSKAQRAYEDALQV  110 (126)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            44444444444444433

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.98  E-value=4e-08  Score=69.23  Aligned_cols=119  Identities=15%  Similarity=0.025  Sum_probs=82.7

Q ss_pred             CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHH
Q 018582          195 YDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSE  274 (353)
Q Consensus       195 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  274 (353)
                      .+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|++.+++..+...       .+..
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-------~~~~   85 (133)
T 2lni_A           14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-------TFIK   85 (133)
T ss_dssp             CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-------TCHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-------CchH
Confidence            355666677777777777777777777776653 22556677777777777777777777777777641       3456


Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcC
Q 018582          275 TIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAG  322 (353)
Q Consensus       275 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  322 (353)
                      .+..+..++.+.|++++|.+.+++..+..+ .+...+..+..++.+.|
T Consensus        86 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           86 GYTRKAAALEAMKDYTKAMDVYQKALDLDS-SCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCG-GGTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhc
Confidence            677777777777777777777777777666 56666777777666655

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.97  E-value=8.3e-08  Score=70.52  Aligned_cols=95  Identities=13%  Similarity=-0.029  Sum_probs=44.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 018582           95 FSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVN  174 (353)
Q Consensus        95 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  174 (353)
                      +..+...+...|++++|...|++.....+. +..++..+...+...|++++|.+.+++.....+ .+...+..+..++..
T Consensus        16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~   93 (166)
T 1a17_A           16 LKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMA   93 (166)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHH
Confidence            334444445555555555555554443322 344444455555555555555555555444432 233344444444455


Q ss_pred             cCChhHHHHHHHHHHhc
Q 018582          175 LKDLPGAEKCFKEWESG  191 (353)
Q Consensus       175 ~~~~~~a~~~~~~~~~~  191 (353)
                      .|++++|...+++..+.
T Consensus        94 ~~~~~~A~~~~~~a~~~  110 (166)
T 1a17_A           94 LGKFRAALRDYETVVKV  110 (166)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHh
Confidence            55555555555544443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.97  E-value=1.3e-07  Score=76.82  Aligned_cols=170  Identities=8%  Similarity=-0.045  Sum_probs=125.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC---CC--
Q 018582           92 WTTFSNLASIYVEAGLFEKAERALKELENRNAHRD-----LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN---TA--  161 (353)
Q Consensus        92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~--  161 (353)
                      ...+...+..+...|++++|.+.+.+..+......     ...+..+...+...|++++|+..+++.......   +.  
T Consensus        75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  154 (293)
T 2qfc_A           75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN  154 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence            44555678888899999999999988776533311     123444666778889999999999988754221   11  


Q ss_pred             hhHHHHHHHHHHhcCChhHHHHHHHHHH---hcCCC-C--cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC----CCC-
Q 018582          162 NISYLNMIQVLVNLKDLPGAEKCFKEWE---SGCAT-Y--DIRVTNVMIGAYAKEGRLENAEELKERARRRG----ADP-  230 (353)
Q Consensus       162 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~-~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~p-  230 (353)
                      ..+|..+...|...|++++|...+++..   +.... +  ...++..+...|...|++++|...+++..+..    ... 
T Consensus       155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~  234 (293)
T 2qfc_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL  234 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence            3478889999999999999999999976   22211 1  22588889999999999999999999876431    111 


Q ss_pred             ChhhHHHHHHHHHccCChHHH-HHHHHHHHHc
Q 018582          231 NAKTWEIFSDYYLRNGDMKLA-VDCLEKAIDT  261 (353)
Q Consensus       231 ~~~~~~~li~~~~~~~~~~~a-~~~~~~~~~~  261 (353)
                      -..+|..+...|...|++++| ...+++....
T Consensus       235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~  266 (293)
T 2qfc_A          235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence            156788889999999999999 7778776543

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.96  E-value=1.6e-08  Score=73.10  Aligned_cols=94  Identities=16%  Similarity=0.105  Sum_probs=38.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 018582           95 FSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVN  174 (353)
Q Consensus        95 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  174 (353)
                      +..+...+.+.|++++|...|++.....+. +...|..+..+|...|++++|+..|++.....+. +...|..+..++..
T Consensus        39 ~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~~~  116 (151)
T 3gyz_A           39 IYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQLR  116 (151)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHH
Confidence            333444444444444444444444433322 3334444444444444444444444444433321 23333344444444


Q ss_pred             cCChhHHHHHHHHHHh
Q 018582          175 LKDLPGAEKCFKEWES  190 (353)
Q Consensus       175 ~~~~~~a~~~~~~~~~  190 (353)
                      .|++++|...|++..+
T Consensus       117 lg~~~eA~~~~~~al~  132 (151)
T 3gyz_A          117 LKAPLKAKECFELVIQ  132 (151)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            4444444444444433

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.95  E-value=7.8e-09  Score=83.51  Aligned_cols=98  Identities=8%  Similarity=-0.090  Sum_probs=59.1

Q ss_pred             CchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 018582           20 SSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLA   99 (353)
Q Consensus        20 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~   99 (353)
                      +...+..+...+.+.|++++|...|++..... +.+...|..+..++...|++++|...+++..+.  .+.+...+..+.
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg   79 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLG   79 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence            34455566666666666666666666666532 224455556666666666666666666666654  344555666666


Q ss_pred             HHHHhcCCHHHHHHHHHHHHH
Q 018582          100 SIYVEAGLFEKAERALKELEN  120 (353)
Q Consensus       100 ~~~~~~~~~~~a~~~~~~~~~  120 (353)
                      .+|...|++++|...|++..+
T Consensus        80 ~~~~~~g~~~~A~~~~~~al~  100 (281)
T 2c2l_A           80 QCQLEMESYDEAIANLQRAYS  100 (281)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHH
Confidence            666666666666666666544

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.94  E-value=1e-07  Score=70.00  Aligned_cols=127  Identities=9%  Similarity=0.029  Sum_probs=73.9

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 018582           58 TYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLY  137 (353)
Q Consensus        58 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  137 (353)
                      .+..+...+...|++++|...|++..+.  .+.+..++..+..++...|++++|...+++.....+. +..++..+...+
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~   91 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence            3445555566666666666666666664  3445566666666666666777776666666654432 455666666666


Q ss_pred             HccCCHHHHHHHHHHHHHhCCCCChhHHH--HHHHHHHhcCChhHHHHHHHHH
Q 018582          138 GQTGNLSEVYRIWRSLRLAFPNTANISYL--NMIQVLVNLKDLPGAEKCFKEW  188 (353)
Q Consensus       138 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~  188 (353)
                      ...|++++|...|++.....+. +...+.  ..+..+...|++++|.+.+...
T Consensus        92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  143 (166)
T 1a17_A           92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK  143 (166)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence            6677777777777666655432 223332  2222344555556655555543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.94  E-value=1.2e-07  Score=65.73  Aligned_cols=92  Identities=15%  Similarity=0.192  Sum_probs=35.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 018582           96 SNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNL  175 (353)
Q Consensus        96 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  175 (353)
                      ..+...+...|++++|.+.++++....+. +..++..+...+...|++++|...++++....+ .+..++..+...+...
T Consensus        13 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~   90 (125)
T 1na0_A           13 YNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQ   90 (125)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHh
Confidence            33334444444444444444444332211 233333344444444444444444444333322 1223333333334444


Q ss_pred             CChhHHHHHHHHHH
Q 018582          176 KDLPGAEKCFKEWE  189 (353)
Q Consensus       176 ~~~~~a~~~~~~~~  189 (353)
                      |++++|...++++.
T Consensus        91 ~~~~~A~~~~~~~~  104 (125)
T 1na0_A           91 GDYDEAIEYYQKAL  104 (125)
T ss_dssp             TCHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHH
Confidence            44444444444333

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.94  E-value=1.8e-08  Score=72.83  Aligned_cols=124  Identities=10%  Similarity=-0.066  Sum_probs=98.2

Q ss_pred             hHHHHHHHHHhcCCcchHHHHHHHHHHCCCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHH
Q 018582           23 PFNSLMTLYAKTGHPEKIPAIIQEMKASSIMP-DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASI  101 (353)
Q Consensus        23 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  101 (353)
                      ....+.+.+...+.+.++++         +.| +...+..+...+.+.|++++|...|+++...  .|.+...|..+..+
T Consensus        11 ~~~~l~~~~~~~~~l~~al~---------l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~   79 (151)
T 3gyz_A           11 ISTAVIDAINSGATLKDINA---------IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAI   79 (151)
T ss_dssp             HHHHHHHHHHTSCCTGGGCC---------SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCHHHHhC---------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence            34455555554444444422         223 3446777888899999999999999999987  56778889999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCC
Q 018582          102 YVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFP  158 (353)
Q Consensus       102 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  158 (353)
                      |...|++++|+..|++.....+. +..+|..+..+|...|++++|...|++..+..+
T Consensus        80 ~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~  135 (151)
T 3gyz_A           80 YQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN  135 (151)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            99999999999999999887665 678899999999999999999999999888754

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.93  E-value=8.8e-08  Score=67.09  Aligned_cols=119  Identities=13%  Similarity=-0.037  Sum_probs=80.9

Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHH
Q 018582          196 DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSET  275 (353)
Q Consensus       196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  275 (353)
                      +...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|.+.+++..+...       .+...
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~   82 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-------AYSKA   82 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-------cCHHH
Confidence            44556666667777777777777777766553 22456666677777777777777777777776641       23566


Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCC
Q 018582          276 IRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR  323 (353)
Q Consensus       276 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  323 (353)
                      +..+...+...|++++|...+++..+..+ .+...+..+..++.+.|+
T Consensus        83 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           83 YGRMGLALSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhc
Confidence            67777777777777777777777777766 566677777777766665

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.93  E-value=4.7e-09  Score=87.08  Aligned_cols=151  Identities=10%  Similarity=0.001  Sum_probs=93.4

Q ss_pred             CChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCC--------------HHHHHHHHH
Q 018582           70 NDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRD--------------LSAYQFLIT  135 (353)
Q Consensus        70 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~  135 (353)
                      +++++|...++.....  .+.+...+..+...|.+.|++++|...|++.....+...              ..+|..+..
T Consensus       127 ~~~~~A~~~~~~a~~~--~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~  204 (336)
T 1p5q_A          127 KSFEKAKESWEMNSEE--KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM  204 (336)
T ss_dssp             EEEECCCCGGGCCHHH--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             eecccccchhcCCHHH--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence            3445555555444432  223455667777778888888888888887776544322              356666666


Q ss_pred             HHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHH
Q 018582          136 LYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLEN  215 (353)
Q Consensus       136 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  215 (353)
                      +|.+.|++++|+..+++..+..+ .+...|..+..++...|++++|...|++..+..+. +...+..+..++.+.|+.++
T Consensus       205 ~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~  282 (336)
T 1p5q_A          205 CHLKLQAFSAAIESCNKALELDS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLA  282 (336)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777776666543 24556666666666677777777777666665433 55566666666666666666


Q ss_pred             H-HHHHHHHH
Q 018582          216 A-EELKERAR  224 (353)
Q Consensus       216 a-~~~~~~~~  224 (353)
                      | ...|..|.
T Consensus       283 a~~~~~~~~~  292 (336)
T 1p5q_A          283 REKKLYANMF  292 (336)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5 33444443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.92  E-value=7.6e-08  Score=67.43  Aligned_cols=115  Identities=14%  Similarity=0.004  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 018582           94 TFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLV  173 (353)
Q Consensus        94 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  173 (353)
                      .+..+...+...|++++|...+++.....+. +...+..+...+...|++++|.+.+++.....+ .+...+..+..++.
T Consensus        14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~   91 (131)
T 2vyi_A           14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGLALS   91 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHHHHH
Confidence            3444444444455555555555444433221 344444444444444555555544444444322 12334444444444


Q ss_pred             hcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC
Q 018582          174 NLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEG  211 (353)
Q Consensus       174 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  211 (353)
                      ..|++++|...+++..+..+. +...+..+..++...|
T Consensus        92 ~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~  128 (131)
T 2vyi_A           92 SLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLR  128 (131)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHT
T ss_pred             HhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHh
Confidence            444444444444444443321 3334444444444333

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.91  E-value=1e-07  Score=67.08  Aligned_cols=96  Identities=17%  Similarity=0.130  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 018582           93 TTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVL  172 (353)
Q Consensus        93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  172 (353)
                      ..+..+...+.+.|++++|...|++.....+. +..++..+...+...|++++|++.+++..+..+ .+...+..+..++
T Consensus        17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~   94 (133)
T 2lni_A           17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAAAL   94 (133)
T ss_dssp             HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHHHH
Confidence            33444444444444444444444444433221 334444444444444444444444444444322 1233344444444


Q ss_pred             HhcCChhHHHHHHHHHHh
Q 018582          173 VNLKDLPGAEKCFKEWES  190 (353)
Q Consensus       173 ~~~~~~~~a~~~~~~~~~  190 (353)
                      ...|++++|.+.+++..+
T Consensus        95 ~~~~~~~~A~~~~~~~~~  112 (133)
T 2lni_A           95 EAMKDYTKAMDVYQKALD  112 (133)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHH
Confidence            444444444444444443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.91  E-value=3.6e-08  Score=75.22  Aligned_cols=84  Identities=17%  Similarity=0.158  Sum_probs=36.7

Q ss_pred             hcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcc----C-CCCHHHHHHHHHHHHccCC
Q 018582           68 AVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRN----A-HRDLSAYQFLITLYGQTGN  142 (353)
Q Consensus        68 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~~~  142 (353)
                      ..|++++|.+.++.+...  ......++..+...+...|++++|...+++.....    . .....++..+...+...|+
T Consensus         4 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            4 EAHDYALAERQAQALLAH--PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             ---CHHHHHHHHHHHHTS--TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccccHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            345555555533333221  12334445555555555555555555555543310    0 0122334444445555555


Q ss_pred             HHHHHHHHHHH
Q 018582          143 LSEVYRIWRSL  153 (353)
Q Consensus       143 ~~~a~~~~~~~  153 (353)
                      +++|.+.+++.
T Consensus        82 ~~~A~~~~~~a   92 (203)
T 3gw4_A           82 WDAARRCFLEE   92 (203)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            55555555543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.90  E-value=1e-08  Score=82.87  Aligned_cols=95  Identities=8%  Similarity=-0.059  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 018582           93 TTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVL  172 (353)
Q Consensus        93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  172 (353)
                      ..+..+...+.+.|++++|...|++.....+. +...|..+...|.+.|++++|+..+++..+..+ .+...+..+..++
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~   82 (281)
T 2c2l_A            5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQCQ   82 (281)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence            33444444444555555555555544443322 344444444555555555555555554443322 1333444444555


Q ss_pred             HhcCChhHHHHHHHHHH
Q 018582          173 VNLKDLPGAEKCFKEWE  189 (353)
Q Consensus       173 ~~~~~~~~a~~~~~~~~  189 (353)
                      ...|++++|...|++..
T Consensus        83 ~~~g~~~~A~~~~~~al   99 (281)
T 2c2l_A           83 LEMESYDEAIANLQRAY   99 (281)
T ss_dssp             HHTTCHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHH
Confidence            55555555555555444

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.90  E-value=2.8e-08  Score=74.18  Aligned_cols=123  Identities=13%  Similarity=0.153  Sum_probs=80.2

Q ss_pred             HhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHH-HHhcCCH--
Q 018582           32 AKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASI-YVEAGLF--  108 (353)
Q Consensus        32 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--  108 (353)
                      ...|++++|...+++..+.. +.+...|..+..++...|++++|...|++..+.  .+.+...+..+..+ +...|++  
T Consensus        21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~   97 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMT   97 (177)
T ss_dssp             C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcch
Confidence            44567777777777766643 334566677777777777777777777777765  34556666666666 6677776  


Q ss_pred             HHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCC
Q 018582          109 EKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFP  158 (353)
Q Consensus       109 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  158 (353)
                      ++|...+++.....+. +...+..+...+...|++++|...|++..+..+
T Consensus        98 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  146 (177)
T 2e2e_A           98 AQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLNS  146 (177)
T ss_dssp             HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence            7777777777665443 566667777777777777777777777766543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.90  E-value=4.2e-08  Score=73.19  Aligned_cols=120  Identities=8%  Similarity=0.049  Sum_probs=56.6

Q ss_pred             hcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHH-HHccCCH--H
Q 018582           68 AVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITL-YGQTGNL--S  144 (353)
Q Consensus        68 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~  144 (353)
                      ..|++++|...++...+.  .+.+...+..+...|...|++++|...|++.....+. +...+..+... +...|++  +
T Consensus        22 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~   98 (177)
T 2e2e_A           22 SQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTA   98 (177)
T ss_dssp             -----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCH
T ss_pred             hccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchH
Confidence            445555555555555554  3344455555555555555555555555555444332 34444444444 4445554  5


Q ss_pred             HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 018582          145 EVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESG  191 (353)
Q Consensus       145 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  191 (353)
                      +|...+++.....+ .+...+..+..++...|++++|...++++.+.
T Consensus        99 ~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A           99 QTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            55555555444432 12334444444444444555554444444443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.90  E-value=2.6e-08  Score=71.96  Aligned_cols=101  Identities=10%  Similarity=0.012  Sum_probs=68.3

Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHH
Q 018582          196 DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSET  275 (353)
Q Consensus       196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  275 (353)
                      +...+..+...+...|++++|...|++...... .+...|..+..+|...|++++|++.|++.+....       .+...
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-------~~~~~   91 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-------XEPRF   91 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-------TCTHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-------CCchH
Confidence            455566666677777777777777777766532 2556666677777777777777777777777651       24566


Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 018582          276 IRTFMRHFEQEKDVDGAEGFLEILKKAVD  304 (353)
Q Consensus       276 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  304 (353)
                      +..+..++...|++++|...|++..+..+
T Consensus        92 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p  120 (148)
T 2vgx_A           92 PFHAAECLLQXGELAEAESGLFLAQELIA  120 (148)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            66677777777777777777777776655

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.89  E-value=3.9e-08  Score=75.03  Aligned_cols=158  Identities=16%  Similarity=0.079  Sum_probs=117.0

Q ss_pred             HhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHh----CCC-CChhHHHHHHHHHHhcCC
Q 018582          103 VEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLA----FPN-TANISYLNMIQVLVNLKD  177 (353)
Q Consensus       103 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~  177 (353)
                      ...|++++|.+.++.+.. .+.....++..+...+...|++++|...+++....    +.. ....++..+...+...|+
T Consensus         3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            467999999996655543 23345778899999999999999999999987652    111 223467888899999999


Q ss_pred             hhHHHHHHHHHHhc----CCC--CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCCC--hhhHHHHHHHHHccC
Q 018582          178 LPGAEKCFKEWESG----CAT--YDIRVTNVMIGAYAKEGRLENAEELKERARRRG---ADPN--AKTWEIFSDYYLRNG  246 (353)
Q Consensus       178 ~~~a~~~~~~~~~~----~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~p~--~~~~~~li~~~~~~~  246 (353)
                      +++|...+++....    +..  .....+..+...+...|++++|...+++..+..   ..+.  ..++..+...+...|
T Consensus        82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  161 (203)
T 3gw4_A           82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK  161 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence            99999999987643    212  234567888999999999999999999876421   1111  234577888899999


Q ss_pred             ChHHHHHHHHHHHHc
Q 018582          247 DMKLAVDCLEKAIDT  261 (353)
Q Consensus       247 ~~~~a~~~~~~~~~~  261 (353)
                      ++++|.+.+++..+.
T Consensus       162 ~~~~A~~~~~~al~~  176 (203)
T 3gw4_A          162 NLLEAQQHWLRARDI  176 (203)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999887765

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.88  E-value=5e-08  Score=70.44  Aligned_cols=97  Identities=13%  Similarity=0.023  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 018582           92 WTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQV  171 (353)
Q Consensus        92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  171 (353)
                      ...+..+...+.+.|++++|...|+......+. +...|..+..+|...|++++|+..|++.....+ .+...+..+..+
T Consensus        21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~   98 (148)
T 2vgx_A           21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAEC   98 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHH
Confidence            334444455555555555555555555444332 444455555555555555555555555544433 133444445555


Q ss_pred             HHhcCChhHHHHHHHHHHh
Q 018582          172 LVNLKDLPGAEKCFKEWES  190 (353)
Q Consensus       172 ~~~~~~~~~a~~~~~~~~~  190 (353)
                      +...|++++|...|++..+
T Consensus        99 ~~~~g~~~~A~~~~~~al~  117 (148)
T 2vgx_A           99 LLQXGELAEAESGLFLAQE  117 (148)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHH
Confidence            5555555555555555443

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.86  E-value=1.8e-06  Score=75.35  Aligned_cols=84  Identities=7%  Similarity=-0.023  Sum_probs=63.1

Q ss_pred             CCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCC-hhHHHHHHHHHHHc-CCCCCcHHHHHHHHHHHH----hcCCH
Q 018582           35 GHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVND-ISGAERVIEEMKRD-GRVAADWTTFSNLASIYV----EAGLF  108 (353)
Q Consensus        35 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~~----~~~~~  108 (353)
                      |+++.+..+|++....  .|+...|...+....+.++ .+....+|+..... |..+.+...|...+..+.    ..++.
T Consensus        28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~  105 (493)
T 2uy1_A           28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI  105 (493)
T ss_dssp             TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred             CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence            8899999999999884  4799999999988777664 45677888887764 323456777777777654    34678


Q ss_pred             HHHHHHHHHHHH
Q 018582          109 EKAERALKELEN  120 (353)
Q Consensus       109 ~~a~~~~~~~~~  120 (353)
                      +.+.++|++...
T Consensus       106 ~~vR~iy~rAL~  117 (493)
T 2uy1_A          106 EKIRNGYMRALQ  117 (493)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            889999999876

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.86  E-value=5.6e-08  Score=77.01  Aligned_cols=126  Identities=13%  Similarity=-0.082  Sum_probs=54.3

Q ss_pred             HHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCc--HHHHHHHHHHHHhcC
Q 018582          134 ITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYD--IRVTNVMIGAYAKEG  211 (353)
Q Consensus       134 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g  211 (353)
                      ...+...|++++|.++|+.+...+  |+......+...+.+.+++++|+..|+...... .|.  ...+..+..++...|
T Consensus       109 A~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG  185 (282)
T 4f3v_A          109 AACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLA  185 (282)
T ss_dssp             HHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCC
Confidence            344444455555555554443322  222133333334445555555555554332211 110  123444445555555


Q ss_pred             ChHHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582          212 RLENAEELKERARRRGADPN--AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG  262 (353)
Q Consensus       212 ~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  262 (353)
                      ++++|+..|++.......|.  .........++.+.|+.++|...|+++....
T Consensus       186 ~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~  238 (282)
T 4f3v_A          186 LFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH  238 (282)
T ss_dssp             CHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            55555555555443211122  1233334444455555555555555555544

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.84  E-value=2.1e-07  Score=73.72  Aligned_cols=198  Identities=10%  Similarity=-0.035  Sum_probs=141.2

Q ss_pred             hcCCHHHHHHHHHHHHHccCCCCHHHHHHH-------HHHHHccCCHHHHHHHHHHHHHhCCCCC---------------
Q 018582          104 EAGLFEKAERALKELENRNAHRDLSAYQFL-------ITLYGQTGNLSEVYRIWRSLRLAFPNTA---------------  161 (353)
Q Consensus       104 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------  161 (353)
                      ..++...|.+.|.++....+. ....|..+       ...+.+.++..+++..+..-..  +.|+               
T Consensus        18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~   94 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI   94 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred             cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence            578888888888888776554 56677666       3445454455555544444322  1111               


Q ss_pred             -------hhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--h
Q 018582          162 -------NISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPN--A  232 (353)
Q Consensus       162 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~--~  232 (353)
                             ..........+...|++++|.++|+.+...++. +. ....+...+.+.+++++|+..|+...... .|.  .
T Consensus        95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~-~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~  171 (282)
T 4f3v_A           95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSE-HL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG  171 (282)
T ss_dssp             EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCH-HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred             ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-hH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence                   123345677888999999999999998876532 33 66666778999999999999998655431 121  2


Q ss_pred             hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcc--cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhh
Q 018582          233 KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP--SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEV  310 (353)
Q Consensus       233 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  310 (353)
                      ..+..+..++...|++++|+..|++.......      |  ..........++.+.|+.++|...|+++...+| . ...
T Consensus       172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~------P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P-~-~~~  243 (282)
T 4f3v_A          172 AAGVAHGVAAANLALFTEAERRLTEANDSPAG------EACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP-E-PKV  243 (282)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTT------TTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC-C-HHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCC------ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-c-HHH
Confidence            36778889999999999999999998854311      3  345677778889999999999999999999887 3 665


Q ss_pred             hHHHH
Q 018582          311 FEPLI  315 (353)
Q Consensus       311 ~~~l~  315 (353)
                      +..|.
T Consensus       244 ~~aL~  248 (282)
T 4f3v_A          244 AAALK  248 (282)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            55553

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.83  E-value=1.2e-05  Score=65.66  Aligned_cols=231  Identities=10%  Similarity=0.031  Sum_probs=169.3

Q ss_pred             hhHHHHHHH---HHhcCCcc-hHHHHHHHHHHCCCCCCcc-hHHHHHHHHHhcCC----------hhHHHHHHHHHHHcC
Q 018582           22 MPFNSLMTL---YAKTGHPE-KIPAIIQEMKASSIMPDSY-TYNVWMRALAAVND----------ISGAERVIEEMKRDG   86 (353)
Q Consensus        22 ~~~~~ll~~---~~~~~~~~-~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~   86 (353)
                      ..|..+...   ..+.|.++ +|+++++.+...  .|+.. +|+.--.++...+.          +++++.+++.+... 
T Consensus        27 ~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~-  103 (331)
T 3dss_A           27 KLYQSATQAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV-  103 (331)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh-
Confidence            445555443   34567766 799999999985  45544 45554444333332          67899999999987 


Q ss_pred             CCCCcHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCC-HHHHHHHHHHHHHhCCCCChh
Q 018582           87 RVAADWTTFSNLASIYVEAG--LFEKAERALKELENRNAHRDLSAYQFLITLYGQTGN-LSEVYRIWRSLRLAFPNTANI  163 (353)
Q Consensus        87 ~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~  163 (353)
                       .+-+..+|+.-.-.+.+.+  .+++++.+++.+.+..+. +..+|+.-.-.+...|. ++++++.++.+.+..+ -|..
T Consensus       104 -~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~S  180 (331)
T 3dss_A          104 -NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYS  180 (331)
T ss_dssp             -CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHH
T ss_pred             -CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHH
Confidence             6778889888877787888  489999999999988765 88888888888888888 5999999999998876 4777


Q ss_pred             HHHHHHHHHHhc--------------CChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc-----------CChHHHHH
Q 018582          164 SYLNMIQVLVNL--------------KDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKE-----------GRLENAEE  218 (353)
Q Consensus       164 ~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~a~~  218 (353)
                      .|+.....+.+.              +.++++.+.+.......+. |...|+-+-..+.+.           +.++++++
T Consensus       181 AW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~  259 (331)
T 3dss_A          181 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELE  259 (331)
T ss_dssp             HHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHH
Confidence            777776666655              4477889999998887655 888887655555554           45789999


Q ss_pred             HHHHHHhcCCCCChhhHHHHHH-----HHHccCChHHHHHHHHHHHHcC
Q 018582          219 LKERARRRGADPNAKTWEIFSD-----YYLRNGDMKLAVDCLEKAIDTG  262 (353)
Q Consensus       219 ~~~~~~~~~~~p~~~~~~~li~-----~~~~~~~~~~a~~~~~~~~~~~  262 (353)
                      .++++.+.  .||. .|..+..     .....+..+++...+.++.+.+
T Consensus       260 ~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D  305 (331)
T 3dss_A          260 SCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD  305 (331)
T ss_dssp             HHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence            99999986  4554 4433222     2224677888999999999877

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.83  E-value=1.9e-07  Score=65.26  Aligned_cols=112  Identities=12%  Similarity=0.008  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHH
Q 018582          197 IRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETI  276 (353)
Q Consensus       197 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  276 (353)
                      ...+..+...+.+.|++++|...|++..+.. +.+...|..+..++.+.|++++|++.+++.++...       .+...+
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-------~~~~~~   75 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-------NFVRAY   75 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-------CcHHHH
Confidence            3455566666777777777777777766653 22556677777777777777777777777777651       235667


Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHHhcC------CCCChhhhHHHHHH
Q 018582          277 RTFMRHFEQEKDVDGAEGFLEILKKAV------DDLGVEVFEPLIRT  317 (353)
Q Consensus       277 ~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~  317 (353)
                      ..+..++...|++++|...+++..+..      + .+...+..+..+
T Consensus        76 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p-~~~~~~~~l~~~  121 (126)
T 3upv_A           76 IRKATAQIAVKEYASALETLDAARTKDAEVNNGS-SAREIDQLYYKA  121 (126)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTT-THHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCch-hHHHHHHHHHHH
Confidence            777777777777777777777777666      4 444455444443

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.82  E-value=9.4e-08  Score=79.25  Aligned_cols=151  Identities=7%  Similarity=-0.045  Sum_probs=102.6

Q ss_pred             cCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc---------------HHHHHHH
Q 018582           34 TGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAAD---------------WTTFSNL   98 (353)
Q Consensus        34 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------------~~~~~~l   98 (353)
                      .+++++|++.|+...... +-+...+..+...+.+.|++++|...|++..+..  +.+               ..+|..+
T Consensus       126 L~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nl  202 (336)
T 1p5q_A          126 LKSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNL  202 (336)
T ss_dssp             EEEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred             EeecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHH
Confidence            344555555544433211 1135566677777777777777777777777752  222               4677778


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 018582           99 ASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDL  178 (353)
Q Consensus        99 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  178 (353)
                      ..+|.+.|++++|+..+++.....+. +..+|..+..+|...|++++|+..|++..+..+ .+...+..+..++...|+.
T Consensus       203 a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~  280 (336)
T 1p5q_A          203 AMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQ  280 (336)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHH
Confidence            88888888888888888888776544 677778888888888888888888888777654 3556777777777777877


Q ss_pred             hHH-HHHHHHHH
Q 018582          179 PGA-EKCFKEWE  189 (353)
Q Consensus       179 ~~a-~~~~~~~~  189 (353)
                      +++ ...+..|.
T Consensus       281 ~~a~~~~~~~~~  292 (336)
T 1p5q_A          281 LAREKKLYANMF  292 (336)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            777 44555554

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.81  E-value=2.1e-08  Score=76.40  Aligned_cols=88  Identities=10%  Similarity=-0.031  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 018582          128 SAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAY  207 (353)
Q Consensus       128 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~  207 (353)
                      .+|..+..+|...|++++|+..+++.....+ .+...+..+..++...|++++|...|++..+..+. +...+..+..++
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~  166 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCV  166 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHH
Confidence            3444455555555555555555555544432 23444445555555555555555555555444322 344444444444


Q ss_pred             HhcCChHHHH
Q 018582          208 AKEGRLENAE  217 (353)
Q Consensus       208 ~~~g~~~~a~  217 (353)
                      ...++.+++.
T Consensus       167 ~~~~~~~~~~  176 (198)
T 2fbn_A          167 NKLKEARKKD  176 (198)
T ss_dssp             HHHHHHHC--
T ss_pred             HHHHHHHHHH
Confidence            4444444333

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.80  E-value=4.2e-07  Score=63.42  Aligned_cols=88  Identities=14%  Similarity=0.130  Sum_probs=32.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 018582           98 LASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKD  177 (353)
Q Consensus        98 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  177 (353)
                      +...+.+.|++++|...|++.....+. +...|..+..++.+.|++++|+..+++..+..+ .+...|..+..++...|+
T Consensus        10 ~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~   87 (126)
T 3upv_A           10 EGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKE   87 (126)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhC
Confidence            333333444444444444433333221 333333333334444444444444443333322 122333333333333344


Q ss_pred             hhHHHHHHHH
Q 018582          178 LPGAEKCFKE  187 (353)
Q Consensus       178 ~~~a~~~~~~  187 (353)
                      +++|...|++
T Consensus        88 ~~~A~~~~~~   97 (126)
T 3upv_A           88 YASALETLDA   97 (126)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            4433333333

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.79  E-value=4e-07  Score=62.36  Aligned_cols=111  Identities=15%  Similarity=0.026  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHH
Q 018582          197 IRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETI  276 (353)
Q Consensus       197 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  276 (353)
                      ...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+...       .+...+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~   75 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-------DWGKGY   75 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-------TCHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-------ccHHHH
Confidence            3455556666666667777776666666542 22455666666666666777777777777666541       235566


Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHH
Q 018582          277 RTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIR  316 (353)
Q Consensus       277 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  316 (353)
                      ..+..++...|++++|...+++..+.++ .+...+..+..
T Consensus        76 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~  114 (118)
T 1elw_A           76 SRKAAALEFLNRFEEAKRTYEEGLKHEA-NNPQLKEGLQN  114 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHcCC-CCHHHHHHHHH
Confidence            6666667777777777777777666665 45555544443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.76  E-value=2.5e-08  Score=75.98  Aligned_cols=159  Identities=12%  Similarity=-0.023  Sum_probs=98.0

Q ss_pred             HHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCC---------------hhHH
Q 018582          101 IYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTA---------------NISY  165 (353)
Q Consensus       101 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~  165 (353)
                      .....|+++.+.+.++.-....+ .....+..+...+...|++++|+..|++.....+...               ...+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (198)
T 2fbn_A           13 GRENLYFQGAKKSIYDYTDEEKV-QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN   91 (198)
T ss_dssp             ---------CCCSGGGCCHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhccccCchhhCCHHHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence            33344555555544442221111 1334555666667777777777777777665433211               2678


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHcc
Q 018582          166 LNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRN  245 (353)
Q Consensus       166 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~  245 (353)
                      ..+..++...|++++|...+++..+..+ .+...+..+..+|...|++++|...|++..+... -+...+..+...+...
T Consensus        92 ~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~  169 (198)
T 2fbn_A           92 LNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNKL  169 (198)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHH
Confidence            8888999999999999999999988764 3788899999999999999999999999887632 2566777777777777


Q ss_pred             CChHHHH-HHHHHHHHcC
Q 018582          246 GDMKLAV-DCLEKAIDTG  262 (353)
Q Consensus       246 ~~~~~a~-~~~~~~~~~~  262 (353)
                      ++.+++. ..+..+...+
T Consensus       170 ~~~~~~~~~~~~~~f~~~  187 (198)
T 2fbn_A          170 KEARKKDKLTFGGMFDKG  187 (198)
T ss_dssp             HHHHC-------------
T ss_pred             HHHHHHHHHHHHHHhccc
Confidence            6666665 4555554443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.76  E-value=1e-06  Score=60.22  Aligned_cols=93  Identities=15%  Similarity=0.142  Sum_probs=37.6

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 018582           96 SNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNL  175 (353)
Q Consensus        96 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  175 (353)
                      ..+...+...|++++|...+++.....+. +...+..+...+...|++++|...+++..+..+ .+...+..+..++...
T Consensus         8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~   85 (118)
T 1elw_A            8 KEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALEFL   85 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHH
Confidence            33444444444444444444444333221 333344444444444444444444444433322 1233333344444444


Q ss_pred             CChhHHHHHHHHHHh
Q 018582          176 KDLPGAEKCFKEWES  190 (353)
Q Consensus       176 ~~~~~a~~~~~~~~~  190 (353)
                      |++++|...+++..+
T Consensus        86 ~~~~~A~~~~~~~~~  100 (118)
T 1elw_A           86 NRFEEAKRTYEEGLK  100 (118)
T ss_dssp             TCHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHH
Confidence            444444444444433

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.75  E-value=1.1e-07  Score=68.01  Aligned_cols=93  Identities=17%  Similarity=0.102  Sum_probs=43.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 018582           95 FSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVN  174 (353)
Q Consensus        95 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  174 (353)
                      +..+...+.+.|++++|...|+......+. +...|..+..+|...|++++|+..|++.....+ .+...+..+..++..
T Consensus        21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~   98 (142)
T 2xcb_A           21 LYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAECHLQ   98 (142)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHH
Confidence            334444444455555555555544443332 444444444445555555555555554444432 133344444444445


Q ss_pred             cCChhHHHHHHHHHH
Q 018582          175 LKDLPGAEKCFKEWE  189 (353)
Q Consensus       175 ~~~~~~a~~~~~~~~  189 (353)
                      .|++++|...|+...
T Consensus        99 ~g~~~~A~~~~~~al  113 (142)
T 2xcb_A           99 LGDLDGAESGFYSAR  113 (142)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHH
Confidence            555555555554444

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.75  E-value=4e-07  Score=65.09  Aligned_cols=99  Identities=11%  Similarity=-0.032  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHH
Q 018582          198 RVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIR  277 (353)
Q Consensus       198 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (353)
                      ..+..+...+.+.|++++|...|++.....+ .+...|..+..++...|++++|+..|++......       .+...+.
T Consensus        19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~   90 (142)
T 2xcb_A           19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-------NEPRFPF   90 (142)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCTHHHH
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-------CCcHHHH
Confidence            3444445555555666666666665555422 2445555555556666666666666666655541       2344555


Q ss_pred             HHHHHHHhcCChhhHHHHHHHHHhcCC
Q 018582          278 TFMRHFEQEKDVDGAEGFLEILKKAVD  304 (353)
Q Consensus       278 ~l~~~~~~~~~~~~a~~~~~~~~~~~~  304 (353)
                      .+..++...|++++|...|++..+..+
T Consensus        91 ~lg~~~~~~g~~~~A~~~~~~al~~~p  117 (142)
T 2xcb_A           91 HAAECHLQLGDLDGAESGFYSARALAA  117 (142)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            555556666666666666666555444

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.75  E-value=2.8e-07  Score=64.48  Aligned_cols=98  Identities=16%  Similarity=0.203  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC--CCC----hhhHHH
Q 018582          164 SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGA--DPN----AKTWEI  237 (353)
Q Consensus       164 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~p~----~~~~~~  237 (353)
                      ++..+...+.+.|++++|...|++..+..+. +...|..+..+|...|++++|+..+++..+...  .++    ..+|..
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~   88 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR   88 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence            3444555555666666666666665554433 455566666666666666666666666554211  111    124555


Q ss_pred             HHHHHHccCChHHHHHHHHHHHHcC
Q 018582          238 FSDYYLRNGDMKLAVDCLEKAIDTG  262 (353)
Q Consensus       238 li~~~~~~~~~~~a~~~~~~~~~~~  262 (353)
                      +...+...|++++|++.|++.+...
T Consensus        89 lg~~~~~~~~~~~A~~~~~kal~~~  113 (127)
T 4gcn_A           89 AGNAFQKQNDLSLAVQWFHRSLSEF  113 (127)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            6666667777777777777776654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.75  E-value=4.3e-07  Score=66.73  Aligned_cols=100  Identities=16%  Similarity=-0.028  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHH
Q 018582          197 IRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETI  276 (353)
Q Consensus       197 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  276 (353)
                      ...+..+...+...|++++|...|++..+... .+...|..+..+|...|++++|++.+++.++...       .+...|
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~   82 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-------KYSKAW   82 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-------CCHHHH
Confidence            34445555555555555555555555554421 1444555555555555555555555555555540       134555


Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 018582          277 RTFMRHFEQEKDVDGAEGFLEILKKAVD  304 (353)
Q Consensus       277 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~  304 (353)
                      ..+..++...|++++|...|++..+..+
T Consensus        83 ~~lg~~~~~~g~~~~A~~~~~~al~~~p  110 (164)
T 3sz7_A           83 SRLGLARFDMADYKGAKEAYEKGIEAEG  110 (164)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            5555555555556666555555555554

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.72  E-value=1e-06  Score=75.66  Aligned_cols=168  Identities=10%  Similarity=-0.066  Sum_probs=108.8

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHhCCC-CChh----HHHHHHHHHHhcCChhHHHHHHHHHHh----cCC-CCcHHH
Q 018582          130 YQFLITLYGQTGNLSEVYRIWRSLRLAFPN-TANI----SYLNMIQVLVNLKDLPGAEKCFKEWES----GCA-TYDIRV  199 (353)
Q Consensus       130 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~  199 (353)
                      +..+...|...|++++|.+.+..+...... ++..    +.+.+...+...|+++.+..++.....    .+. ..-..+
T Consensus        58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  137 (434)
T 4b4t_Q           58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL  137 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence            556667777777777777777765442111 1111    222233334455777777777776542    221 223567


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhc--CCC--C-ChhhHHHHHHHHHccCChHHHHHHHHHHHHcC--CCCCCCCccc
Q 018582          200 TNVMIGAYAKEGRLENAEELKERARRR--GAD--P-NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG--RGDGGKWVPS  272 (353)
Q Consensus       200 ~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~--p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~  272 (353)
                      +..+...|...|++++|..++.++...  +..  + ...++..++..|...|++++|..++++.....  +.    ..+.
T Consensus       138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~  213 (434)
T 4b4t_Q          138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIY----CPTQ  213 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC----CCHH
T ss_pred             HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC----CchH
Confidence            778888999999999999998887642  111  1 13567888899999999999999998876642  11    0111


Q ss_pred             --HHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 018582          273 --SETIRTFMRHFEQEKDVDGAEGFLEILKK  301 (353)
Q Consensus       273 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  301 (353)
                        ...+..+...+...|++++|...+.+..+
T Consensus       214 ~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          214 TVAELDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence              34566667778889999999888777654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.70  E-value=8.1e-07  Score=63.70  Aligned_cols=112  Identities=16%  Similarity=-0.018  Sum_probs=70.9

Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC----hhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcc
Q 018582          196 DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPN----AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP  271 (353)
Q Consensus       196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  271 (353)
                      +...+..+...+...|++++|...|++..+.  .|+    ...+..+...+...|++++|++.+++..+...       .
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-------~   97 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-------G   97 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-------C
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-------c
Confidence            4555666666666677777777777766654  333    45566666667777777777777777666541       2


Q ss_pred             cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHH
Q 018582          272 SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRT  317 (353)
Q Consensus       272 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  317 (353)
                      +...+..+..++...|++++|...+++..+..+ .+...+..+...
T Consensus        98 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~  142 (148)
T 2dba_A           98 DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEP-KNKVFQEALRNI  142 (148)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHH
Confidence            455666666677777777777777777776665 455555444443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.69  E-value=8.3e-07  Score=65.17  Aligned_cols=96  Identities=17%  Similarity=0.007  Sum_probs=46.2

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 018582           58 TYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLY  137 (353)
Q Consensus        58 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  137 (353)
                      .+..+...+...|++++|...|++..+.  .+.+...+..+..+|.+.|++++|+..|++.....+. +...|..+...|
T Consensus        13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~   89 (164)
T 3sz7_A           13 KLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLAR   89 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence            3444444444555555555555554443  2334444445555555555555555555554444322 344444455555


Q ss_pred             HccCCHHHHHHHHHHHHHh
Q 018582          138 GQTGNLSEVYRIWRSLRLA  156 (353)
Q Consensus       138 ~~~~~~~~a~~~~~~~~~~  156 (353)
                      ...|++++|.+.|++..+.
T Consensus        90 ~~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           90 FDMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHh
Confidence            5555555555555544443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.68  E-value=2.2e-07  Score=63.06  Aligned_cols=100  Identities=8%  Similarity=-0.053  Sum_probs=54.8

Q ss_pred             cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCC-CCHHHHHHHH
Q 018582           56 SYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAH-RDLSAYQFLI  134 (353)
Q Consensus        56 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~  134 (353)
                      ...+..+...+...|++++|...|++..+.  .+.+...+..+..++...|++++|...+++..+..+. .+...+..+.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~   83 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA   83 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence            334445555555555666666666555554  2344555555556666666666666666655543221 0345555555


Q ss_pred             HHHHcc-CCHHHHHHHHHHHHHhC
Q 018582          135 TLYGQT-GNLSEVYRIWRSLRLAF  157 (353)
Q Consensus       135 ~~~~~~-~~~~~a~~~~~~~~~~~  157 (353)
                      ..+... |++++|.+.++......
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~~~~  107 (112)
T 2kck_A           84 DALRYIEGKEVEAEIAEARAKLEH  107 (112)
T ss_dssp             HHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred             HHHHHHhCCHHHHHHHHHHHhhcc
Confidence            666666 66666666666655543

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.67  E-value=5.1e-07  Score=63.16  Aligned_cols=58  Identities=16%  Similarity=0.105  Sum_probs=27.0

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018582           60 NVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELE  119 (353)
Q Consensus        60 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  119 (353)
                      ..+...+.+.|++++|+..|++.++.  .|.+...|..+..+|.+.|++++|+..+++..
T Consensus        12 ~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al   69 (127)
T 4gcn_A           12 KDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAV   69 (127)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence            33444444444444444444444443  23334444444444555555555554444443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.66  E-value=1.1e-06  Score=62.11  Aligned_cols=100  Identities=13%  Similarity=-0.026  Sum_probs=53.4

Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHH
Q 018582          196 DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSET  275 (353)
Q Consensus       196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  275 (353)
                      +...+..+...+...|++++|...|.+...... .+...|..+...+...|++++|...+++..+...       .+...
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-------~~~~~   79 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDG-------QSVKA   79 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-------hhHHH
Confidence            344555555555555555555555555554421 2344555555555555555555555555555440       23445


Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 018582          276 IRTFMRHFEQEKDVDGAEGFLEILKKAV  303 (353)
Q Consensus       276 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~  303 (353)
                      +..+..++...|++++|...++++.+..
T Consensus        80 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~  107 (137)
T 3q49_B           80 HFFLGQCQLEMESYDEAIANLQRAYSLA  107 (137)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHC
Confidence            5555555555566666655555555543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.66  E-value=8.1e-07  Score=60.17  Aligned_cols=97  Identities=6%  Similarity=-0.028  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC-CChhHHHHHHHHH
Q 018582           94 TFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN-TANISYLNMIQVL  172 (353)
Q Consensus        94 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~  172 (353)
                      .+..+...+.+.|++++|...+++..+..+. +...+..+...+...|++++|.+.+++..+..+. .+...+..+..++
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~   86 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL   86 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence            3344445555555555555555555443322 3444455555555555555555555554443221 0234444455555


Q ss_pred             Hhc-CChhHHHHHHHHHHhc
Q 018582          173 VNL-KDLPGAEKCFKEWESG  191 (353)
Q Consensus       173 ~~~-~~~~~a~~~~~~~~~~  191 (353)
                      ... |++++|.+.++.....
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           87 RYIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             TTCSSCSHHHHHHHHHHGGG
T ss_pred             HHHhCCHHHHHHHHHHHhhc
Confidence            555 5555555555555444

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.65  E-value=5.3e-06  Score=71.25  Aligned_cols=196  Identities=8%  Similarity=-0.086  Sum_probs=87.1

Q ss_pred             HHHHhcCCcchHHHHHHHHHHCCCCCCc----------------chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcH
Q 018582           29 TLYAKTGHPEKIPAIIQEMKASSIMPDS----------------YTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADW   92 (353)
Q Consensus        29 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~----------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~   92 (353)
                      ..+.+.|++++|++.|..+.+.......                ..+..+...|...|++++|.+.+..+...-...++.
T Consensus        12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~   91 (434)
T 4b4t_Q           12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS   91 (434)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence            3455667777777777776664211111                014445555666666666666655544421011111


Q ss_pred             ----HHHHHHHHHHHhcCCHHHHHHHHHHHHH----ccCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC----
Q 018582           93 ----TTFSNLASIYVEAGLFEKAERALKELEN----RNAHR-DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN----  159 (353)
Q Consensus        93 ----~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----  159 (353)
                          .+.+.+...+...|+.+.|..+++....    .+..+ -..++..+...|...|++++|..+++++...-..    
T Consensus        92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~  171 (434)
T 4b4t_Q           92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK  171 (434)
T ss_dssp             HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence                1122222333344555555555555422    11111 1234445555555555555555555554332110    


Q ss_pred             C-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhc---CCCC-c--HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 018582          160 T-ANISYLNMIQVLVNLKDLPGAEKCFKEWESG---CATY-D--IRVTNVMIGAYAKEGRLENAEELKERAR  224 (353)
Q Consensus       160 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~-~--~~~~~~li~~~~~~g~~~~a~~~~~~~~  224 (353)
                      + ...++..++..|...|++++|..++++....   ...| .  ...+..+...+...|++++|...|.+..
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~  243 (434)
T 4b4t_Q          172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF  243 (434)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            1 1124444555555555555555555544321   0111 1  1233333444444455555555554443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.65  E-value=1.3e-06  Score=62.59  Aligned_cols=95  Identities=15%  Similarity=0.030  Sum_probs=46.4

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHH
Q 018582           58 TYNVWMRALAAVNDISGAERVIEEMKRDGRVAAD----WTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFL  133 (353)
Q Consensus        58 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  133 (353)
                      .+..+...+...|++++|...|++..+.   .|+    ...+..+..+|...|++++|...+++.....+. +...+..+
T Consensus        30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~  105 (148)
T 2dba_A           30 QLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYRR  105 (148)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHHH
Confidence            3444444444555555555555555442   222    344444555555555555555555555443222 34445555


Q ss_pred             HHHHHccCCHHHHHHHHHHHHHh
Q 018582          134 ITLYGQTGNLSEVYRIWRSLRLA  156 (353)
Q Consensus       134 ~~~~~~~~~~~~a~~~~~~~~~~  156 (353)
                      ...+...|++++|...|++....
T Consensus       106 a~~~~~~~~~~~A~~~~~~al~~  128 (148)
T 2dba_A          106 SQALEKLGRLDQAVLDLQRCVSL  128 (148)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHc
Confidence            55555555555555555555444

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.65  E-value=1.3e-06  Score=61.85  Aligned_cols=93  Identities=12%  Similarity=-0.029  Sum_probs=41.3

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 018582           58 TYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLY  137 (353)
Q Consensus        58 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  137 (353)
                      .+..+...+...|++++|...|+.....  .+.+...+..+..++...|++++|...+++.....+. +...+..+...+
T Consensus        11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~   87 (137)
T 3q49_B           11 ELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQCQ   87 (137)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHHHH
Confidence            3444444444444444444444444443  2333444444444444444444444444444443322 334444444444


Q ss_pred             HccCCHHHHHHHHHHH
Q 018582          138 GQTGNLSEVYRIWRSL  153 (353)
Q Consensus       138 ~~~~~~~~a~~~~~~~  153 (353)
                      ...|++++|...|++.
T Consensus        88 ~~~~~~~~A~~~~~~a  103 (137)
T 3q49_B           88 LEMESYDEAIANLQRA  103 (137)
T ss_dssp             HHTTCHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHH
Confidence            4444444444444443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.64  E-value=5.9e-07  Score=62.81  Aligned_cols=98  Identities=17%  Similarity=0.207  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC--CCC----hhhHHH
Q 018582          164 SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGA--DPN----AKTWEI  237 (353)
Q Consensus       164 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~p~----~~~~~~  237 (353)
                      .+..+...+...|++++|...+++.....+ .+...+..+...|...|++++|...+++..+...  .++    ..++..
T Consensus         6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (131)
T 1elr_A            6 KEKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence            344455555556666666666665555432 2455556666666666666666666666554321  111    455666


Q ss_pred             HHHHHHccCChHHHHHHHHHHHHcC
Q 018582          238 FSDYYLRNGDMKLAVDCLEKAIDTG  262 (353)
Q Consensus       238 li~~~~~~~~~~~a~~~~~~~~~~~  262 (353)
                      +...+...|++++|.+.|++..+..
T Consensus        85 la~~~~~~~~~~~A~~~~~~~~~~~  109 (131)
T 1elr_A           85 IGNSYFKEEKYKDAIHFYNKSLAEH  109 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhC
Confidence            6666777777777777777777654

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.62  E-value=6.8e-07  Score=61.92  Aligned_cols=94  Identities=13%  Similarity=0.005  Sum_probs=50.7

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 018582           59 YNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYG  138 (353)
Q Consensus        59 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  138 (353)
                      +..+...+.+.|++++|...|++..+.  .+.+...+..+..++...|++++|+..|++..+..+. +..++..+...+.
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~   96 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHT   96 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence            334444555555555555555555554  3444555555555555555555555555555554433 4445555555555


Q ss_pred             ccCCHHHHHHHHHHHHH
Q 018582          139 QTGNLSEVYRIWRSLRL  155 (353)
Q Consensus       139 ~~~~~~~a~~~~~~~~~  155 (353)
                      ..|++++|+..+++..+
T Consensus        97 ~~g~~~~A~~~~~~al~  113 (121)
T 1hxi_A           97 NEHNANAALASLRAWLL  113 (121)
T ss_dssp             HHHHHHHHHHHHHHHHC
T ss_pred             HcCCHHHHHHHHHHHHH
Confidence            55555555555555543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.61  E-value=1.1e-06  Score=61.44  Aligned_cols=96  Identities=15%  Similarity=0.139  Sum_probs=43.2

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCC--CC----HHHHHH
Q 018582           59 YNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAH--RD----LSAYQF  132 (353)
Q Consensus        59 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~  132 (353)
                      +..+...+...|++++|...|++..+.  .+.+...+..+...+...|++++|...+++.....+.  ++    ..++..
T Consensus         7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (131)
T 1elr_A            7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence            333444444445555555555544443  2333444444444555555555555555444332211  11    334444


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHh
Q 018582          133 LITLYGQTGNLSEVYRIWRSLRLA  156 (353)
Q Consensus       133 l~~~~~~~~~~~~a~~~~~~~~~~  156 (353)
                      +...+...|++++|.+.|++..+.
T Consensus        85 la~~~~~~~~~~~A~~~~~~~~~~  108 (131)
T 1elr_A           85 IGNSYFKEEKYKDAIHFYNKSLAE  108 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHh
Confidence            444444455555555555444443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.59  E-value=3.6e-06  Score=58.73  Aligned_cols=100  Identities=11%  Similarity=0.036  Sum_probs=69.1

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhcCCCCCh---hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc----HH
Q 018582          202 VMIGAYAKEGRLENAEELKERARRRGADPNA---KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS----SE  274 (353)
Q Consensus       202 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~~  274 (353)
                      .+...+...|++++|...|+++.+.... +.   ..+..+..++...|++++|...+++..+..        |+    ..
T Consensus         7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~   77 (129)
T 2xev_A            7 NVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--------PTHDKAAG   77 (129)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTSTTHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--------CCCcccHH
Confidence            4456667777888888888777765321 22   366667777778888888888888877765        32    45


Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhh
Q 018582          275 TIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVF  311 (353)
Q Consensus       275 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  311 (353)
                      .+..+..++...|++++|...++++.+..| .+....
T Consensus        78 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~  113 (129)
T 2xev_A           78 GLLKLGLSQYGEGKNTEAQQTLQQVATQYP-GSDAAR  113 (129)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TSHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CChHHH
Confidence            667777778888888888888888877765 444433

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.55  E-value=1e-06  Score=60.94  Aligned_cols=92  Identities=11%  Similarity=-0.037  Sum_probs=44.3

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCC
Q 018582          168 MIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGD  247 (353)
Q Consensus       168 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~  247 (353)
                      +...+.+.|++++|...+++..+..+. +...|..+..++...|++++|...|++..+..+. +...+..+...+...|+
T Consensus        23 ~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g~  100 (121)
T 1hxi_A           23 EGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHN  100 (121)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence            344444555555555555555444322 4444445555555555555555555555443211 33444445555555555


Q ss_pred             hHHHHHHHHHHHHc
Q 018582          248 MKLAVDCLEKAIDT  261 (353)
Q Consensus       248 ~~~a~~~~~~~~~~  261 (353)
                      +++|+..+++.++.
T Consensus       101 ~~~A~~~~~~al~~  114 (121)
T 1hxi_A          101 ANAALASLRAWLLS  114 (121)
T ss_dssp             HHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHh
Confidence            55555555555443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.54  E-value=1.6e-06  Score=75.44  Aligned_cols=120  Identities=14%  Similarity=-0.022  Sum_probs=61.4

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 018582           99 ASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDL  178 (353)
Q Consensus        99 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  178 (353)
                      ...+.+.|++++|.+.+++..+..+. +..+|..+..+|.+.|++++|++.+++..+..+ .+..++..+..++...|++
T Consensus        13 g~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~   90 (477)
T 1wao_1           13 ANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKF   90 (477)
T ss_dssp             SSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCH
Confidence            33445556666666666665554332 455556666666666666666666666555433 2344555555556666666


Q ss_pred             hHHHHHHHHHHhcCCCCcHHHHHHHHHH--HHhcCChHHHHHHHH
Q 018582          179 PGAEKCFKEWESGCATYDIRVTNVMIGA--YAKEGRLENAEELKE  221 (353)
Q Consensus       179 ~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~  221 (353)
                      ++|.+.+++..+..+. +...+..+..+  +.+.|++++|.+.++
T Consensus        91 ~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           91 RAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            6666666655544322 23333333333  555555555555555

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.54  E-value=1.8e-06  Score=62.76  Aligned_cols=130  Identities=18%  Similarity=0.098  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHccCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC-CC----hh
Q 018582           94 TFSNLASIYVEAGLFEKAERALKELENRNAH-RD----LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN-TA----NI  163 (353)
Q Consensus        94 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~  163 (353)
                      ++..+...+...|++++|...+++....... ++    ..++..+...+...|++++|.+.+++....... ++    ..
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   90 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            4445555555666666666666554332111 01    124455555555666666666655554332100 00    12


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhc----CC-CCcHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 018582          164 SYLNMIQVLVNLKDLPGAEKCFKEWESG----CA-TYDIRVTNVMIGAYAKEGRLENAEELKERA  223 (353)
Q Consensus       164 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~  223 (353)
                      .+..+...+...|++++|...+++..+.    +. ......+..+...|...|++++|.+.+++.
T Consensus        91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  155 (164)
T 3ro3_A           91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH  155 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            3344444455555555555555443321    00 001223334444444444444444444443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.53  E-value=1.7e-06  Score=75.19  Aligned_cols=115  Identities=10%  Similarity=0.066  Sum_probs=49.3

Q ss_pred             hcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHH
Q 018582           68 AVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVY  147 (353)
Q Consensus        68 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  147 (353)
                      +.|++++|.+.|++..+.  .+.+..++..+..+|.+.|++++|+..+++..+..+. +..+|..+..+|...|++++|+
T Consensus        18 ~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~eA~   94 (477)
T 1wao_1           18 KAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRAAL   94 (477)
T ss_dssp             TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHH
Confidence            344445555555444443  2333444444555555555555555555554443322 3444444445555555555555


Q ss_pred             HHHHHHHHhCCCCChhHHHHHHHH--HHhcCChhHHHHHHH
Q 018582          148 RIWRSLRLAFPNTANISYLNMIQV--LVNLKDLPGAEKCFK  186 (353)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~  186 (353)
                      +.|++..+..+. +...+..+..+  +.+.|++++|.+.++
T Consensus        95 ~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           95 RDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            555544443321 12222223222  444455555555444

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.51  E-value=1.3e-05  Score=55.86  Aligned_cols=92  Identities=13%  Similarity=0.051  Sum_probs=42.0

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHcCCCCCcH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCC--HHHHHHHHHHH
Q 018582           63 MRALAAVNDISGAERVIEEMKRDGRVAADW---TTFSNLASIYVEAGLFEKAERALKELENRNAHRD--LSAYQFLITLY  137 (353)
Q Consensus        63 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~  137 (353)
                      ...+...|++++|...|+.+.+..  +.+.   ..+..+..++.+.|++++|...|+......+...  ..++..+...+
T Consensus         9 a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~   86 (129)
T 2xev_A            9 AFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ   86 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence            334444555555555555544431  1111   2344444555555555555555555444332210  33444444455


Q ss_pred             HccCCHHHHHHHHHHHHHh
Q 018582          138 GQTGNLSEVYRIWRSLRLA  156 (353)
Q Consensus       138 ~~~~~~~~a~~~~~~~~~~  156 (353)
                      ...|++++|...|+.+...
T Consensus        87 ~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           87 YGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHH
Confidence            5555555555555554443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.49  E-value=5e-06  Score=71.95  Aligned_cols=143  Identities=8%  Similarity=0.022  Sum_probs=75.1

Q ss_pred             ChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCC--------------HHHHHHHHHH
Q 018582           71 DISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRD--------------LSAYQFLITL  136 (353)
Q Consensus        71 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~  136 (353)
                      ++++|...|+.....  .+.....+..+...+.+.|++++|...|++.....+...              ..+|..+..+
T Consensus       249 ~~~~A~~~~~~~~~~--~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~  326 (457)
T 1kt0_A          249 SFEKAKESWEMDTKE--KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC  326 (457)
T ss_dssp             EEECCCCGGGSCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccCcchhhcCHHH--HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence            334444444433332  122344566677777777777777777777765433321              3455555555


Q ss_pred             HHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHH
Q 018582          137 YGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENA  216 (353)
Q Consensus       137 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a  216 (353)
                      |.+.|++++|+..+++..+..+ .+...|..+..+|...|++++|...|++..+..+. +...+..+..++.+.++.+++
T Consensus       327 ~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a  404 (457)
T 1kt0_A          327 YLKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNER  404 (457)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555555433 23445555555555555555555555555554322 444555555555555554444


Q ss_pred             H
Q 018582          217 E  217 (353)
Q Consensus       217 ~  217 (353)
                      .
T Consensus       405 ~  405 (457)
T 1kt0_A          405 D  405 (457)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.47  E-value=1.9e-06  Score=62.58  Aligned_cols=135  Identities=14%  Similarity=0.088  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC-CC----hhHHHHHHHHHHhcCChhHHHHHHHHHHhcC----C-CCc
Q 018582          127 LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN-TA----NISYLNMIQVLVNLKDLPGAEKCFKEWESGC----A-TYD  196 (353)
Q Consensus       127 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~  196 (353)
                      ..++..+...+...|++++|+..+++..+.... ++    ..++..+...+...|++++|...+++.....    . ...
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~   88 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE   88 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence            346788888999999999999999987654211 11    1367888899999999999999999976421    1 112


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCC-ChhhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 018582          197 IRVTNVMIGAYAKEGRLENAEELKERARRR----GADP-NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDT  261 (353)
Q Consensus       197 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  261 (353)
                      ...+..+...+...|++++|...+++..+.    +..+ ....+..+...+...|++++|.+.+++..+.
T Consensus        89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  158 (164)
T 3ro3_A           89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  158 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            456778889999999999999999987643    1111 1346777888899999999999999998765

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.47  E-value=2.9e-06  Score=73.43  Aligned_cols=122  Identities=12%  Similarity=0.052  Sum_probs=97.4

Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--------------hhhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 018582          196 DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPN--------------AKTWEIFSDYYLRNGDMKLAVDCLEKAIDT  261 (353)
Q Consensus       196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~--------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  261 (353)
                      ....+..+...|.+.|++++|...|++..+......              ...|..+..+|.+.|++++|+..+++.++.
T Consensus       267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  346 (457)
T 1kt0_A          267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL  346 (457)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            455677777888888888888888888776422211              478888999999999999999999999998


Q ss_pred             CCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCCh
Q 018582          262 GRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTS  325 (353)
Q Consensus       262 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  325 (353)
                      ..       .+...|..+..+|...|++++|...|+++.+..+ .+..++..+..++.+.++..
T Consensus       347 ~p-------~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~  402 (457)
T 1kt0_A          347 DS-------ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQKKAKEHN  402 (457)
T ss_dssp             ST-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHH
T ss_pred             CC-------ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHH
Confidence            61       3578899999999999999999999999999988 78889999999998888743

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.45  E-value=2.1e-05  Score=69.73  Aligned_cols=170  Identities=8%  Similarity=-0.094  Sum_probs=125.0

Q ss_pred             HHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC----------hhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC-
Q 018582          143 LSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKD----------LPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEG-  211 (353)
Q Consensus       143 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-  211 (353)
                      .++|++.++++....+. +..+|+.--.++...|+          ++++.+.++.+.+..++ +..+|+.-...+.+.+ 
T Consensus        45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~  122 (567)
T 1dce_A           45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE  122 (567)
T ss_dssp             SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred             CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence            35666777766665542 34445544444555555          77788888888877655 7777877777777778 


Q ss_pred             -ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhc---
Q 018582          212 -RLENAEELKERARRRGADPNAKTWEIFSDYYLRNG-DMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQE---  286 (353)
Q Consensus       212 -~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---  286 (353)
                       +++++++.++++.+.... +...|+.-...+.+.| .++++++.+.++++..+       -+...|+.....+.+.   
T Consensus       123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-------~n~saW~~r~~ll~~l~~~  194 (567)
T 1dce_A          123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-------SNYSSWHYRSCLLPQLHPQ  194 (567)
T ss_dssp             CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-------CCHHHHHHHHHHHHHHSCC
T ss_pred             ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-------CCccHHHHHHHHHHhhccc
Confidence             668888888888887544 6778887777777777 78888888888888762       3567777766666553   


Q ss_pred             -----------CChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCC
Q 018582          287 -----------KDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR  323 (353)
Q Consensus       287 -----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  323 (353)
                                 +.++++.+.++++...+| .+..+|..+...+.+.++
T Consensus       195 ~~~~~~~~~~~~~~~eel~~~~~ai~~~P-~~~saW~y~~~ll~~~~~  241 (567)
T 1dce_A          195 PDSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGRAEP  241 (567)
T ss_dssp             CCSSSCCSSCHHHHHHHHHHHHHHHHHCS-SCSHHHHHHHHHHSCCCC
T ss_pred             ccccccccccHHHHHHHHHHHHHHHhhCC-CCccHHHHHHHHHhcCCC
Confidence                       457889999999999999 899999999888888776

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.42  E-value=8.4e-06  Score=59.55  Aligned_cols=66  Identities=20%  Similarity=0.177  Sum_probs=51.4

Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582          196 DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG  262 (353)
Q Consensus       196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  262 (353)
                      +...|..+..+|.+.|++++|...+++..+.. +.+...|..+..+|...|++++|...|++.++..
T Consensus        62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  127 (162)
T 3rkv_A           62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH  127 (162)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence            45677777888888888888888888887764 2356777788888888888888888888888876

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.42  E-value=5.7e-06  Score=60.46  Aligned_cols=110  Identities=15%  Similarity=0.090  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhc--------C---------CCCChhhHHHHHHHHHccCChHHHHHHHHHHHHc
Q 018582          199 VTNVMIGAYAKEGRLENAEELKERARRR--------G---------ADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDT  261 (353)
Q Consensus       199 ~~~~li~~~~~~g~~~~a~~~~~~~~~~--------~---------~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  261 (353)
                      .+......+.+.|++++|...|.+....        .         -+.+...|..+..+|.+.|++++|+..+++.++.
T Consensus        13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~   92 (162)
T 3rkv_A           13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR   92 (162)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence            3444555555556666666655555432        0         0113467888899999999999999999999998


Q ss_pred             CCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCh-hhhHHHHH
Q 018582          262 GRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGV-EVFEPLIR  316 (353)
Q Consensus       262 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~  316 (353)
                      ..       .+...|..+..++...|++++|...|++..+..| .+. .....+..
T Consensus        93 ~p-------~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~~l~~  140 (162)
T 3rkv_A           93 EE-------TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP-AAASVVAREMKI  140 (162)
T ss_dssp             ST-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG-GGHHHHHHHHHH
T ss_pred             CC-------cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence            61       3578899999999999999999999999999887 555 33444433

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.42  E-value=1.1e-06  Score=60.46  Aligned_cols=86  Identities=13%  Similarity=0.060  Sum_probs=41.8

Q ss_pred             cCCcchHHHHHHHHHHCC--CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 018582           34 TGHPEKIPAIIQEMKASS--IMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKA  111 (353)
Q Consensus        34 ~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  111 (353)
                      .|++++|+..|++..+.+  -+.+...+..+..++...|++++|...|++..+.  .+.+..++..+..++.+.|++++|
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A   80 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQG   80 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHHH
Confidence            355555555555555432  1122334455555555555555555555555554  233444555555555555555555


Q ss_pred             HHHHHHHHHc
Q 018582          112 ERALKELENR  121 (353)
Q Consensus       112 ~~~~~~~~~~  121 (353)
                      ...+++....
T Consensus        81 ~~~~~~al~~   90 (117)
T 3k9i_A           81 VELLLKIIAE   90 (117)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            5555555443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.41  E-value=5e-05  Score=67.37  Aligned_cols=174  Identities=7%  Similarity=-0.081  Sum_probs=128.3

Q ss_pred             ChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcc
Q 018582           71 DISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGL----------FEKAERALKELENRNAHRDLSAYQFLITLYGQT  140 (353)
Q Consensus        71 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  140 (353)
                      ..++|++.++++...  .+-+..+|+.--.++...|+          ++++++.++.+.+..++ +..+|+.-...+.+.
T Consensus        44 ~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l  120 (567)
T 1dce_A           44 LDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRL  120 (567)
T ss_dssp             CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence            345678888888876  45566677666666666555          78888888888877665 777887777777777


Q ss_pred             C--CHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc-------
Q 018582          141 G--NLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLK-DLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKE-------  210 (353)
Q Consensus       141 ~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-------  210 (353)
                      +  +++++++.++++.+..+. +-.+|+.-...+.+.| .++++.+.++++.+..+. |...|+.....+.+.       
T Consensus       121 ~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~  198 (567)
T 1dce_A          121 PEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSG  198 (567)
T ss_dssp             SSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSS
T ss_pred             ccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccc
Confidence            8  668888888888887653 6777777777777777 788888888888877655 777887777666653       


Q ss_pred             -------CChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHH
Q 018582          211 -------GRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKL  250 (353)
Q Consensus       211 -------g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~  250 (353)
                             +.++++.+.+++.....+. |...|...-..+.+.++.++
T Consensus       199 ~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          199 PQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             SCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred             ccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence                   4578899999888876433 67788888777777766443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.37  E-value=1.8e-06  Score=59.26  Aligned_cols=87  Identities=11%  Similarity=0.037  Sum_probs=55.4

Q ss_pred             cCChhHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHH
Q 018582          175 LKDLPGAEKCFKEWESGC--ATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAV  252 (353)
Q Consensus       175 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~  252 (353)
                      .|++++|...|++..+.+  -+.+...+..+..+|...|++++|...|++..+..+. +...+..+..++...|++++|+
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence            466667777777766653  1224566667777777777777777777777765322 4566666777777777777777


Q ss_pred             HHHHHHHHcC
Q 018582          253 DCLEKAIDTG  262 (353)
Q Consensus       253 ~~~~~~~~~~  262 (353)
                      +.+++.+...
T Consensus        82 ~~~~~al~~~   91 (117)
T 3k9i_A           82 ELLLKIIAET   91 (117)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhC
Confidence            7777776664

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.37  E-value=8.1e-06  Score=68.46  Aligned_cols=86  Identities=10%  Similarity=-0.019  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 018582          164 SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYL  243 (353)
Q Consensus       164 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~  243 (353)
                      .|..+..++.+.|++++|...+++..+..+. +...+..+..+|...|++++|...|++..+... .+...+..+...+.
T Consensus       275 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~  352 (370)
T 1ihg_A          275 CVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQ  352 (370)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence            4444445555555555555555555544322 444455555555555555555555555544321 13334444444444


Q ss_pred             ccCChHHH
Q 018582          244 RNGDMKLA  251 (353)
Q Consensus       244 ~~~~~~~a  251 (353)
                      ..++.+++
T Consensus       353 ~~~~~~~a  360 (370)
T 1ihg_A          353 KIKAQKDK  360 (370)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44444443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.36  E-value=8.7e-06  Score=68.25  Aligned_cols=136  Identities=10%  Similarity=-0.064  Sum_probs=64.4

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 018582           59 YNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYG  138 (353)
Q Consensus        59 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  138 (353)
                      +..+...+.+.|++++|...|++..+.-   +...          .....+.+.       ... +.+..+|..+..+|.
T Consensus       226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~~----------~~~~~~~~~-------~~~-~~~~~~~~nla~~~~  284 (370)
T 1ihg_A          226 LKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGSR----------AAAEDADGA-------KLQ-PVALSCVLNIGACKL  284 (370)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHHH----------HHSCHHHHG-------GGH-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcCc----------cccChHHHH-------HHH-HHHHHHHHHHHHHHH
Confidence            5556666777777777777777776520   0000          000000000       000 012334455555555


Q ss_pred             ccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHH
Q 018582          139 QTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAE  217 (353)
Q Consensus       139 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~  217 (353)
                      +.|++++|++.+++..+..+ .+...+..+..++...|++++|...|++..+..+. +...+..+..++...++.+++.
T Consensus       285 ~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~  361 (370)
T 1ihg_A          285 KMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKE  361 (370)
T ss_dssp             HTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555544332 23344455555555555555555555555544322 4444445555555554444443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.31  E-value=1.8e-06  Score=71.61  Aligned_cols=97  Identities=9%  Similarity=0.030  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHH-H
Q 018582           94 TFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQV-L  172 (353)
Q Consensus        94 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~  172 (353)
                      .|..+..+|.+.|++++|+..+++.....+. +..+|..+..+|...|++++|...|++..+..+. +...+..+... .
T Consensus       232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~  309 (338)
T 2if4_A          232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAE  309 (338)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence            6677888888888888888888887776543 6777888888888888888888888877554332 33344444444 2


Q ss_pred             HhcCChhHHHHHHHHHHhcC
Q 018582          173 VNLKDLPGAEKCFKEWESGC  192 (353)
Q Consensus       173 ~~~~~~~~a~~~~~~~~~~~  192 (353)
                      ...+..+.+.+.|..+....
T Consensus       310 ~~~~~~~~a~~~~~~~l~~~  329 (338)
T 2if4_A          310 QEKALYQKQKEMYKGIFKGK  329 (338)
T ss_dssp             --------------------
T ss_pred             HHHHHHHHHHHHHHHhhCCC
Confidence            34456667777777776543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.30  E-value=9.4e-06  Score=58.15  Aligned_cols=98  Identities=9%  Similarity=-0.025  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC------C-----hhhHHHHHHHHHccCChHHHHHHHHHHHHc------
Q 018582          199 VTNVMIGAYAKEGRLENAEELKERARRRGADP------N-----AKTWEIFSDYYLRNGDMKLAVDCLEKAIDT------  261 (353)
Q Consensus       199 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p------~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------  261 (353)
                      .+......+.+.|++++|...|++..+.....      +     ...|..+..++.+.|++++|+..+++.++.      
T Consensus        13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e   92 (159)
T 2hr2_A           13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE   92 (159)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence            34445555666677777777777666542210      1     237888888899999999999999998887      


Q ss_pred             -CCCCCCCCccc-HHHH----HHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 018582          262 -GRGDGGKWVPS-SETI----RTFMRHFEQEKDVDGAEGFLEILKKAVD  304 (353)
Q Consensus       262 -~~~~~~~~~~~-~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~  304 (353)
                       .        |+ ...|    .....++...|++++|...|++..+..|
T Consensus        93 ~~--------pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p  133 (159)
T 2hr2_A           93 LN--------QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE  133 (159)
T ss_dssp             TT--------STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CC--------CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence             6        65 5678    8999999999999999999999998765

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.26  E-value=3e-05  Score=55.55  Aligned_cols=27  Identities=11%  Similarity=-0.213  Sum_probs=14.3

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHh
Q 018582          130 YQFLITLYGQTGNLSEVYRIWRSLRLA  156 (353)
Q Consensus       130 ~~~l~~~~~~~~~~~~a~~~~~~~~~~  156 (353)
                      +......+.+.|++++|+..|++..+.
T Consensus        14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l   40 (159)
T 2hr2_A           14 ALSDAQRQLVAGEYDEAAANCRRAMEI   40 (159)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence            333444455556666666666555544

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.26  E-value=6.4e-06  Score=68.26  Aligned_cols=149  Identities=11%  Similarity=0.023  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 018582           93 TTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVL  172 (353)
Q Consensus        93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  172 (353)
                      ..+..+...+.+.|++++|...|++.....  |+..       .+...++.+++...+.          ...|..+..++
T Consensus       180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~~  240 (338)
T 2if4_A          180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAACL  240 (338)
T ss_dssp             HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccch-------hhhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence            344555566666666666666666655432  2211       1122223333222111          13677888889


Q ss_pred             HhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHH-HHccCChHHH
Q 018582          173 VNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDY-YLRNGDMKLA  251 (353)
Q Consensus       173 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~-~~~~~~~~~a  251 (353)
                      .+.|++++|...+++..+..+. +...|..+..+|...|++++|...|++..+.... +...+..+... ....+..+.+
T Consensus       241 ~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a  318 (338)
T 2if4_A          241 IKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQ  318 (338)
T ss_dssp             HTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred             HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998887643 7788888999999999999999999988765321 33444444444 2345667778


Q ss_pred             HHHHHHHHHcC
Q 018582          252 VDCLEKAIDTG  262 (353)
Q Consensus       252 ~~~~~~~~~~~  262 (353)
                      .+.|.+|....
T Consensus       319 ~~~~~~~l~~~  329 (338)
T 2if4_A          319 KEMYKGIFKGK  329 (338)
T ss_dssp             -----------
T ss_pred             HHHHHHhhCCC
Confidence            88888887764

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.14  E-value=3.6e-05  Score=49.64  Aligned_cols=84  Identities=18%  Similarity=0.265  Sum_probs=70.8

Q ss_pred             ChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhh
Q 018582          231 NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEV  310 (353)
Q Consensus       231 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  310 (353)
                      +...+..+...+...|++++|++.+++..+...       .+...+..+..++.+.|++++|...+++..+..+ .+...
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~   79 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-------NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEA   79 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHH
Confidence            345677788888999999999999999988761       3577888899999999999999999999999888 78888


Q ss_pred             hHHHHHHHHHcC
Q 018582          311 FEPLIRTYAAAG  322 (353)
Q Consensus       311 ~~~l~~~~~~~g  322 (353)
                      +..+..++.+.|
T Consensus        80 ~~~l~~~~~~~g   91 (91)
T 1na3_A           80 KQNLGNAKQKQG   91 (91)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcC
Confidence            888888877654

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.14  E-value=2.5e-05  Score=53.22  Aligned_cols=77  Identities=17%  Similarity=0.167  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 018582           75 AERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLR  154 (353)
Q Consensus        75 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  154 (353)
                      |...|++..+.  .+.+...+..+...|...|++++|...|++.....+. +..+|..+...|...|++++|...|++..
T Consensus         4 a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A            4 ITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             HHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34444444443  2334444444555555555555555555554443322 34444444455555555555555554443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.10  E-value=0.00011  Score=52.02  Aligned_cols=110  Identities=13%  Similarity=-0.003  Sum_probs=63.7

Q ss_pred             CHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh----cCChHHHH
Q 018582          142 NLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAK----EGRLENAE  217 (353)
Q Consensus       142 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~  217 (353)
                      ++++|++.|++..+.+. |+  ..  +...|...+..++|.+.|++..+.+   +...+..|...|..    .+++++|.
T Consensus        10 d~~~A~~~~~~aa~~g~-~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A           10 DLKKAIQYYVKACELNE-MF--GC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHTTC-TT--HH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHcCCC-Hh--hh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            45556666665555542 21  11  4444545555555666666655554   44555556666655    56666666


Q ss_pred             HHHHHHHhcCCCCChhhHHHHHHHHHc----cCChHHHHHHHHHHHHcC
Q 018582          218 ELKERARRRGADPNAKTWEIFSDYYLR----NGDMKLAVDCLEKAIDTG  262 (353)
Q Consensus       218 ~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~  262 (353)
                      +.|++..+.|   +...+..|...|..    .+++++|.++|++..+.|
T Consensus        82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            6666666554   44555566666665    566777777777766665

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.10  E-value=4.3e-05  Score=52.03  Aligned_cols=81  Identities=11%  Similarity=-0.025  Sum_probs=54.1

Q ss_pred             chHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018582           38 EKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKE  117 (353)
Q Consensus        38 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  117 (353)
                      +.|++.|++..+.. +.+...+..+...+...|++++|...|++..+.  .+.+...+..+..+|...|++++|...|++
T Consensus         2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~   78 (115)
T 2kat_A            2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWES   78 (115)
T ss_dssp             CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            35666666666542 334556666667777777777777777777765  345566677777777777777777777777


Q ss_pred             HHHc
Q 018582          118 LENR  121 (353)
Q Consensus       118 ~~~~  121 (353)
                      ....
T Consensus        79 al~~   82 (115)
T 2kat_A           79 GLAA   82 (115)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6543

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.09  E-value=0.00016  Score=51.05  Aligned_cols=112  Identities=13%  Similarity=0.004  Sum_probs=93.9

Q ss_pred             CChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHc----cCChHHH
Q 018582          176 KDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLR----NGDMKLA  251 (353)
Q Consensus       176 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~a  251 (353)
                      +++++|.+.|++..+.+ .++..    |...|...+..++|.+.|++..+.|   +...+..+...|..    .+++++|
T Consensus         9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A   80 (138)
T 1klx_A            9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA   80 (138)
T ss_dssp             HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence            46788999999998887 33433    7777778888999999999998875   67788888888887    8899999


Q ss_pred             HHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHh----cCChhhHHHHHHHHHhcCC
Q 018582          252 VDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQ----EKDVDGAEGFLEILKKAVD  304 (353)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~  304 (353)
                      +++|++..+.|         +...+..|...|..    .+++++|.+.|++..+.+.
T Consensus        81 ~~~~~~Aa~~g---------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~  128 (138)
T 1klx_A           81 AQYYSKACGLN---------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  128 (138)
T ss_dssp             HHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCC---------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence            99999999875         56677788888888    8999999999999988876

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.08  E-value=1.6e-05  Score=68.84  Aligned_cols=132  Identities=11%  Similarity=-0.012  Sum_probs=96.5

Q ss_pred             HHHhcCChhHHHHHHHHHHhc-----CC--CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-----CC-CCC-hhhHH
Q 018582          171 VLVNLKDLPGAEKCFKEWESG-----CA--TYDIRVTNVMIGAYAKEGRLENAEELKERARRR-----GA-DPN-AKTWE  236 (353)
Q Consensus       171 ~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~-~p~-~~~~~  236 (353)
                      .+...|++++|..++++..+.     |.  +....+++.|...|...|++++|..++++.++.     |. .|+ ..+++
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            356789999999999887642     21  123577899999999999999999999887632     21 222 35788


Q ss_pred             HHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc-HHHHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 018582          237 IFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKA  302 (353)
Q Consensus       237 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  302 (353)
                      .|...|...|++++|+.++++.++.....-+.-.|+ ..+...+-.++...+.+++|+.+++++++.
T Consensus       398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA  464 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998765410000001243 345666777888899999999999998773

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.05  E-value=4.2e-05  Score=51.46  Aligned_cols=93  Identities=9%  Similarity=-0.004  Sum_probs=60.8

Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc---
Q 018582          196 DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS---  272 (353)
Q Consensus       196 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---  272 (353)
                      +...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|++.+++.++..        |+   
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~   73 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--------STAEH   73 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--------SSTTS
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCccH
Confidence            44566667777777777777777777777653 2256667777777777777777777777777765        33   


Q ss_pred             ----HHHHHHHHHHHHhcCChhhHHHHHH
Q 018582          273 ----SETIRTFMRHFEQEKDVDGAEGFLE  297 (353)
Q Consensus       273 ----~~~~~~l~~~~~~~~~~~~a~~~~~  297 (353)
                          ...+..+..++...|+.+.|...++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           74 VAIRSKLQYRLELAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence                4445555556666666655544433

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.03  E-value=5.4e-05  Score=65.61  Aligned_cols=97  Identities=10%  Similarity=-0.082  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHh-----cCC--CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHh-----cCCC-C
Q 018582          164 SYLNMIQVLVNLKDLPGAEKCFKEWES-----GCA--TYDIRVTNVMIGAYAKEGRLENAEELKERARR-----RGAD-P  230 (353)
Q Consensus       164 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~-p  230 (353)
                      +++.+..+|...|++++|..++++...     .|.  +-...+++.|...|...|++++|..++++..+     .|.. |
T Consensus       353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp  432 (490)
T 3n71_A          353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP  432 (490)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            344444455555555555444444331     111  11233445555555555555555555554332     1211 1


Q ss_pred             C-hhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 018582          231 N-AKTWEIFSDYYLRNGDMKLAVDCLEKAID  260 (353)
Q Consensus       231 ~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~  260 (353)
                      + ..+.+.+-.++...+.+++|+.++.++++
T Consensus       433 ~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          433 ITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1 12233344444455555555555555554

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.02  E-value=6.5e-05  Score=50.50  Aligned_cols=86  Identities=10%  Similarity=0.037  Sum_probs=72.5

Q ss_pred             ChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC---
Q 018582          231 NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLG---  307 (353)
Q Consensus       231 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---  307 (353)
                      +...+..+...+...|++++|++.|++.++...       .+...+..+..++.+.|++++|...+++..+..+ .+   
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~   74 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-------QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS-TAEHV   74 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS-STTSH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CccHH
Confidence            456788888999999999999999999999861       3578899999999999999999999999999887 55   


Q ss_pred             ---hhhhHHHHHHHHHcCCC
Q 018582          308 ---VEVFEPLIRTYAAAGRT  324 (353)
Q Consensus       308 ---~~~~~~l~~~~~~~g~~  324 (353)
                         ...+..+..++...|+.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~   94 (111)
T 2l6j_A           75 AIRSKLQYRLELAQGAVGSV   94 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHhH
Confidence               56677777777776663

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.98  E-value=0.00011  Score=47.23  Aligned_cols=62  Identities=16%  Similarity=0.251  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHh
Q 018582           94 TFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLA  156 (353)
Q Consensus        94 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  156 (353)
                      .+..+...+...|++++|...+++.....+. +..++..+...+...|++++|...+++..+.
T Consensus        11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~   72 (91)
T 1na3_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL   72 (91)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            3344444444444444444444444433222 3344444444444444444444444444443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.94  E-value=4.2e-05  Score=54.67  Aligned_cols=97  Identities=11%  Similarity=0.037  Sum_probs=60.2

Q ss_pred             CChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHhcCCCCChhhHHHHHHHHHcc
Q 018582          176 KDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGR----------LENAEELKERARRRGADPNAKTWEIFSDYYLRN  245 (353)
Q Consensus       176 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~  245 (353)
                      +.+++|.+.++...+..+. +...|+.+..++...++          +++|+..|++..+..+. +...|..+..+|...
T Consensus        16 ~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~l   93 (158)
T 1zu2_A           16 LLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTSF   93 (158)
T ss_dssp             HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHh
Confidence            3444555555555544432 44555555555554443          34777777776665322 455666676666655


Q ss_pred             -----------CChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHH
Q 018582          246 -----------GDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRH  282 (353)
Q Consensus       246 -----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  282 (353)
                                 |++++|++.|++.++..        |+...|...+..
T Consensus        94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~--------P~~~~y~~al~~  133 (158)
T 1zu2_A           94 AFLTPDETEAKHNFDLATQFFQQAVDEQ--------PDNTHYLKSLEM  133 (158)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHHHHHHC--------TTCHHHHHHHHH
T ss_pred             cccCcchhhhhccHHHHHHHHHHHHHhC--------CCCHHHHHHHHH
Confidence                       58999999999999987        877766655554

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.94  E-value=4.9e-05  Score=54.36  Aligned_cols=97  Identities=12%  Similarity=0.105  Sum_probs=62.2

Q ss_pred             hcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 018582           68 AVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLF----------EKAERALKELENRNAHRDLSAYQFLITLY  137 (353)
Q Consensus        68 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  137 (353)
                      +.+.+++|.+.++...+.  .+.+...|..+..++.+.+++          ++|+..|++..+..+. +..+|..+..+|
T Consensus        14 r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay   90 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY   90 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence            445567777777777765  455666776666676666554          4777777777666544 566677777777


Q ss_pred             HccC-----------CHHHHHHHHHHHHHhCCCCChhHHHHHH
Q 018582          138 GQTG-----------NLSEVYRIWRSLRLAFPNTANISYLNMI  169 (353)
Q Consensus       138 ~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~  169 (353)
                      ...|           ++++|++.|++..+..  |+...|...+
T Consensus        91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~--P~~~~y~~al  131 (158)
T 1zu2_A           91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQ--PDNTHYLKSL  131 (158)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred             HHhcccCcchhhhhccHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence            6653           6777777777776653  4444444333

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.87  E-value=0.00014  Score=47.99  Aligned_cols=64  Identities=17%  Similarity=0.111  Sum_probs=35.7

Q ss_pred             CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 018582           90 ADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLR  154 (353)
Q Consensus        90 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  154 (353)
                      .+...+..+..+|.+.|++++|+..|++..+..+. +..+|..+..+|...|++++|.+.|++..
T Consensus         5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al   68 (100)
T 3ma5_A            5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI   68 (100)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34445555555566666666666666655554433 34455555556666666666665555544

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.83  E-value=5.5e-05  Score=50.05  Aligned_cols=64  Identities=11%  Similarity=0.037  Sum_probs=34.6

Q ss_pred             CchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 018582           20 SSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKR   84 (353)
Q Consensus        20 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~   84 (353)
                      +...|..+...|.+.|++++|+..|++..+.. +.+...|..+..++...|++++|...|++..+
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            34455555555555566666666665555532 22344555555555555555555555555544

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.60  E-value=0.0038  Score=51.28  Aligned_cols=74  Identities=11%  Similarity=0.087  Sum_probs=61.8

Q ss_pred             CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccH
Q 018582          194 TYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSS  273 (353)
Q Consensus       194 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  273 (353)
                      +.+..+|..+...+...|++++|...+++....+  |+...|..+...+.-.|++++|.+.+++....+        |..
T Consensus       274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~--------P~~  343 (372)
T 3ly7_A          274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR--------PGA  343 (372)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------CSH
T ss_pred             CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CCc
Confidence            4477888888777777899999999999999875  677777788888889999999999999999987        777


Q ss_pred             HHHH
Q 018582          274 ETIR  277 (353)
Q Consensus       274 ~~~~  277 (353)
                      .+|.
T Consensus       344 ~t~~  347 (372)
T 3ly7_A          344 NTLY  347 (372)
T ss_dssp             HHHH
T ss_pred             ChHH
Confidence            6653

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.48  E-value=0.007  Score=49.76  Aligned_cols=64  Identities=9%  Similarity=-0.112  Sum_probs=33.9

Q ss_pred             ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 018582          161 ANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRR  226 (353)
Q Consensus       161 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  226 (353)
                      +..+|..+...+...|++++|...+++....+  |+...|..+...+.-.|++++|.+.|++....
T Consensus       276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL  339 (372)
T 3ly7_A          276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL  339 (372)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            34444444444444555555555555555543  34444445555555556666666655555543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.39  E-value=0.0012  Score=56.40  Aligned_cols=99  Identities=10%  Similarity=-0.084  Sum_probs=74.9

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhc---CCCCC----hhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc-HH
Q 018582          203 MIGAYAKEGRLENAEELKERARRR---GADPN----AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SE  274 (353)
Q Consensus       203 li~~~~~~g~~~~a~~~~~~~~~~---~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~  274 (353)
                      .+..+.+.|++++|..++++..+.   -..|+    ..+++.+...|...|++++|+.++++.+......-+...|+ ..
T Consensus       293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~  372 (429)
T 3qwp_A          293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV  372 (429)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence            355566789999999999998753   12222    35788999999999999999999998876421100112344 46


Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHHh
Q 018582          275 TIRTFMRHFEQEKDVDGAEGFLEILKK  301 (353)
Q Consensus       275 ~~~~l~~~~~~~~~~~~a~~~~~~~~~  301 (353)
                      +++.|...|...|++++|..++++..+
T Consensus       373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          373 QVMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            789999999999999999999998776

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.39  E-value=0.00043  Score=58.97  Aligned_cols=93  Identities=11%  Similarity=-0.054  Sum_probs=70.5

Q ss_pred             hcCChHHHHHHHHHHHhc---CCCCC----hhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc-HHHHHHHH
Q 018582          209 KEGRLENAEELKERARRR---GADPN----AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFM  280 (353)
Q Consensus       209 ~~g~~~~a~~~~~~~~~~---~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~  280 (353)
                      ..|++++|..++++.++.   -+.|+    ..+++.+...|...|++++|+.++++.++.....-+...|+ ..+++.|.
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            357899999999987642   22232    36789999999999999999999999876421111112354 46799999


Q ss_pred             HHHHhcCChhhHHHHHHHHHh
Q 018582          281 RHFEQEKDVDGAEGFLEILKK  301 (353)
Q Consensus       281 ~~~~~~~~~~~a~~~~~~~~~  301 (353)
                      ..|...|++++|..++++..+
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHH
Confidence            999999999999999998776

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.39  E-value=0.00045  Score=45.26  Aligned_cols=57  Identities=19%  Similarity=0.248  Sum_probs=30.7

Q ss_pred             HHHHhcCChhHHHHHHHHHHHcCCCCCcHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcc
Q 018582           64 RALAAVNDISGAERVIEEMKRDGRVAADWT-TFSNLASIYVEAGLFEKAERALKELENRN  122 (353)
Q Consensus        64 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  122 (353)
                      ..+...|++++|...|++..+.  .+.+.. .+..+..+|...|++++|...|++.....
T Consensus         8 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~   65 (99)
T 2kc7_A            8 KELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN   65 (99)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            3444555555555555555554  233444 55555555555555666655555555543

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.35  E-value=0.0024  Score=41.65  Aligned_cols=65  Identities=14%  Similarity=0.114  Sum_probs=55.5

Q ss_pred             HHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcc-cHH-HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhh
Q 018582          238 FSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSE-TIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVF  311 (353)
Q Consensus       238 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  311 (353)
                      ....+...|++++|++.+++..+..        | +.. .+..+..++...|++++|...|++..+.++ .+..++
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~   72 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTE--------PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP-DSPALQ   72 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC--------SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHH
Confidence            4566778899999999999999986        5 456 888899999999999999999999999888 666655

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.18  E-value=0.01  Score=38.31  Aligned_cols=68  Identities=12%  Similarity=-0.012  Sum_probs=36.5

Q ss_pred             CCcHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhC
Q 018582           89 AADWTTFSNLASIYVEAGL---FEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAF  157 (353)
Q Consensus        89 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  157 (353)
                      +.+...+..+..++...++   .++|..++++.....+. ++.+...+...+.+.|++++|+..|+++.+..
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~   73 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN   73 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            3444555555555543333   45566666655554443 45555555555566666666666666655543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.17  E-value=0.0032  Score=53.68  Aligned_cols=63  Identities=17%  Similarity=0.208  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhc-----CC-CCC-hhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 018582          198 RVTNVMIGAYAKEGRLENAEELKERARRR-----GA-DPN-AKTWEIFSDYYLRNGDMKLAVDCLEKAID  260 (353)
Q Consensus       198 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~-~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~  260 (353)
                      .+++.|..+|...|++++|..++++.++.     |. .|+ ..+++.|...|...|++++|+.++++.++
T Consensus       341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            45566666666666666666666655421     11 122 24466666666666666666666666544

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.16  E-value=0.0092  Score=38.50  Aligned_cols=66  Identities=12%  Similarity=0.012  Sum_probs=39.4

Q ss_pred             ChhhHHHHHHHHHccCC---hHHHHHHHHHHHHcCCCCCCCCcc-cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 018582          231 NAKTWEIFSDYYLRNGD---MKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVD  304 (353)
Q Consensus       231 ~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  304 (353)
                      +...+..+..++...++   .++|..++++.++..        | +......+...+.+.|++++|...|+++.+.++
T Consensus         5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d--------p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p   74 (93)
T 3bee_A            5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE--------PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND   74 (93)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC--------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            44555555555543333   566666666666665        3 355555566666666666666666666666655

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.15  E-value=0.005  Score=40.75  Aligned_cols=83  Identities=12%  Similarity=-0.043  Sum_probs=60.9

Q ss_pred             ChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhh
Q 018582          231 NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEV  310 (353)
Q Consensus       231 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  310 (353)
                      +...+..+...+...+++..|...++...+...++...-.+...++..+..++.+.|+++.|...++++.+..| .+..+
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P-~~~~~   82 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP-EHQRA   82 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHH
Confidence            44556677788888888888888888877752111000124578899999999999999999999999999888 56555


Q ss_pred             hHHH
Q 018582          311 FEPL  314 (353)
Q Consensus       311 ~~~l  314 (353)
                      .+.+
T Consensus        83 ~~n~   86 (104)
T 2v5f_A           83 NGNL   86 (104)
T ss_dssp             HHHH
T ss_pred             HhhH
Confidence            4433

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.04  E-value=0.015  Score=41.12  Aligned_cols=87  Identities=13%  Similarity=0.092  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHhcCCCCChhhHHHHHHHHHccC---ChHHHHHHHHHHHHcCCCCCCCCcc--cHHHHHHHHHHHHhcCC
Q 018582          214 ENAEELKERARRRGADPNAKTWEIFSDYYLRNG---DMKLAVDCLEKAIDTGRGDGGKWVP--SSETIRTFMRHFEQEKD  288 (353)
Q Consensus       214 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~  288 (353)
                      ..+.+-|.+..+.|. ++..+...+..++++.+   +.++++.+++...+..       .|  ....+..+.-++.+.|+
T Consensus        15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-------~p~~~rd~lY~LAv~~~kl~~   86 (152)
T 1pc2_A           15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-------SKEEQRDYVFYLAVGNYRLKE   86 (152)
T ss_dssp             HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-------CHHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-------CccchHHHHHHHHHHHHHccC
Confidence            344445555444443 45556556666666665   4556677776666653       13  24455556666677777


Q ss_pred             hhhHHHHHHHHHhcCCCCChh
Q 018582          289 VDGAEGFLEILKKAVDDLGVE  309 (353)
Q Consensus       289 ~~~a~~~~~~~~~~~~~~~~~  309 (353)
                      ++.|.+.++.+.+..| .|..
T Consensus        87 Y~~A~~y~~~lL~ieP-~n~Q  106 (152)
T 1pc2_A           87 YEKALKYVRGLLQTEP-QNNQ  106 (152)
T ss_dssp             HHHHHHHHHHHHHHCT-TCHH
T ss_pred             HHHHHHHHHHHHhcCC-CCHH
Confidence            7777777777776666 4433

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.04  E-value=0.0039  Score=53.14  Aligned_cols=86  Identities=10%  Similarity=0.003  Sum_probs=46.5

Q ss_pred             hcCCHHHHHHHHHHHHHcc---CCC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHHh-----CC-CCCh-hHHHHHH
Q 018582          104 EAGLFEKAERALKELENRN---AHR----DLSAYQFLITLYGQTGNLSEVYRIWRSLRLA-----FP-NTAN-ISYLNMI  169 (353)
Q Consensus       104 ~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~  169 (353)
                      +.|++++|+..+++..+..   ..|    ...+++.+...|...|++++|+.++++....     |. .|+. .+++.+.
T Consensus       299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa  378 (429)
T 3qwp_A          299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG  378 (429)
T ss_dssp             HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence            4456666666666554321   111    1345566666666666666666666654321     11 1111 2456666


Q ss_pred             HHHHhcCChhHHHHHHHHHH
Q 018582          170 QVLVNLKDLPGAEKCFKEWE  189 (353)
Q Consensus       170 ~~~~~~~~~~~a~~~~~~~~  189 (353)
                      ..|...|++++|..++++..
T Consensus       379 ~~~~~~g~~~eA~~~~~~Al  398 (429)
T 3qwp_A          379 KLQLHQGMFPQAMKNLRLAF  398 (429)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHHH
Confidence            66666666666666666644

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.94  E-value=0.03  Score=52.07  Aligned_cols=75  Identities=12%  Similarity=0.116  Sum_probs=40.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 018582           96 SNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNL  175 (353)
Q Consensus        96 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  175 (353)
                      ..++..+.+.|..+.|.++.+.-.            .-.......|+++.|.++.+.+      .+...|..+...+.+.
T Consensus       633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~  694 (814)
T 3mkq_A          633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR  694 (814)
T ss_dssp             HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence            455556666666666665442110            0122334456666666654322      3445666666666666


Q ss_pred             CChhHHHHHHHHH
Q 018582          176 KDLPGAEKCFKEW  188 (353)
Q Consensus       176 ~~~~~a~~~~~~~  188 (353)
                      ++++.|.+.|..+
T Consensus       695 ~~~~~A~~~y~~~  707 (814)
T 3mkq_A          695 FNFKLAIEAFTNA  707 (814)
T ss_dssp             TCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHc
Confidence            6666666666654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.92  E-value=0.013  Score=54.51  Aligned_cols=155  Identities=14%  Similarity=0.045  Sum_probs=100.2

Q ss_pred             HHHHHhcCCHHHHHH-HHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 018582           99 ASIYVEAGLFEKAER-ALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKD  177 (353)
Q Consensus        99 ~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  177 (353)
                      .......++++.|.+ ++..+      ++......++..+.+.|.++.|+++.+.       | .    .-.......|+
T Consensus       606 ~~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~-~----~~f~~~l~~~~  667 (814)
T 3mkq_A          606 FQTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD-------Q-D----QKFELALKVGQ  667 (814)
T ss_dssp             HHHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC-------H-H----HHHHHHHHHTC
T ss_pred             HhHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC-------c-c----hheehhhhcCC
Confidence            344456788988877 55221      1122347778888899999999876632       1 1    11334567899


Q ss_pred             hhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHH
Q 018582          178 LPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEK  257 (353)
Q Consensus       178 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~  257 (353)
                      ++.|.++.+.+      .+...|..+...+.+.|+++.|.+.|.++..         |..+...+...|+.+...++.+.
T Consensus       668 ~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~  732 (814)
T 3mkq_A          668 LTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKD  732 (814)
T ss_dssp             HHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHH
Confidence            99999886542      3678999999999999999999999998753         22344444556666666666555


Q ss_pred             HHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHH
Q 018582          258 AIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEI  298 (353)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  298 (353)
                      ....|        .    ++....+|.+.|++++|.+++.+
T Consensus       733 a~~~~--------~----~~~A~~~~~~~g~~~~a~~~~~~  761 (814)
T 3mkq_A          733 AETTG--------K----FNLAFNAYWIAGDIQGAKDLLIK  761 (814)
T ss_dssp             HHHTT--------C----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHcC--------c----hHHHHHHHHHcCCHHHHHHHHHH
Confidence            55554        1    12222334455566666555544

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=96.72  E-value=0.073  Score=36.45  Aligned_cols=135  Identities=13%  Similarity=0.144  Sum_probs=78.2

Q ss_pred             hcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChh---HHHHHHHHHHhcCChhH
Q 018582          104 EAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANI---SYLNMIQVLVNLKDLPG  180 (353)
Q Consensus       104 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~  180 (353)
                      -.|.+++..++..+...+   .+..-||-+|--....-+-+-..++++.+-..   .|..   -...++.+|.+.+.   
T Consensus        19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis~C~NlKrVi~C~~~~n~---   89 (172)
T 1wy6_A           19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLDKCQNLKSVVECGVINNT---   89 (172)
T ss_dssp             HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGGGCSCTHHHHHHHHHTTC---
T ss_pred             HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCcHhhhcHHHHHHHHHHhcc---
Confidence            356667777777766553   24445555555555555666666665554322   1211   11223333333322   


Q ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHH
Q 018582          181 AEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAID  260 (353)
Q Consensus       181 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~  260 (353)
                                     +.......++.....|+-++..+++..+... .+|++...-.+..+|.+.|+..+|.+++.+..+
T Consensus        90 ---------------~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~  153 (172)
T 1wy6_A           90 ---------------LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACK  153 (172)
T ss_dssp             ---------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ---------------hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence                           3344555666677777777777777775432 355666777777777777777777777777777


Q ss_pred             cCC
Q 018582          261 TGR  263 (353)
Q Consensus       261 ~~~  263 (353)
                      .|+
T Consensus       154 kG~  156 (172)
T 1wy6_A          154 KGE  156 (172)
T ss_dssp             TTC
T ss_pred             hhh
Confidence            773

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.71  E-value=0.036  Score=38.76  Aligned_cols=112  Identities=14%  Similarity=0.141  Sum_probs=71.2

Q ss_pred             CHHHHHHHHHHHHccCCH------HHHHHHHHHHHHhCCCCChh-HHHHHHH------HHHhcCChhHHHHHHHHHHhcC
Q 018582          126 DLSAYQFLITLYGQTGNL------SEVYRIWRSLRLAFPNTANI-SYLNMIQ------VLVNLKDLPGAEKCFKEWESGC  192 (353)
Q Consensus       126 ~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~~~~~~a~~~~~~~~~~~  192 (353)
                      |..+|-..+....+.|++      ++..++|++.... ++|+.. .|...+.      .+...++.++|.++|+.+.+.+
T Consensus        12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h   90 (161)
T 4h7y_A           12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC   90 (161)
T ss_dssp             SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            455666666666666666      6666777766655 223321 1111111      1223478899999999987654


Q ss_pred             CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 018582          193 ATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSD  240 (353)
Q Consensus       193 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~  240 (353)
                      -. -..+|....+.-.+.|+...|.+++.+....+.+| .......++
T Consensus        91 Kk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~  136 (161)
T 4h7y_A           91 KK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR  136 (161)
T ss_dssp             TT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred             HH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence            33 37788888888888999999999999988876654 334444433

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.68  E-value=0.022  Score=40.28  Aligned_cols=81  Identities=11%  Similarity=0.022  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCCC--ChhhHHHHHHHHHccCChHHHHHH
Q 018582          180 GAEKCFKEWESGCATYDIRVTNVMIGAYAKEG---RLENAEELKERARRRGADP--NAKTWEIFSDYYLRNGDMKLAVDC  254 (353)
Q Consensus       180 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~p--~~~~~~~li~~~~~~~~~~~a~~~  254 (353)
                      .+.+-|.+..+.+. ++..+...+..++++.+   +.+++..+|+++.+.. .|  +...+-.+.-+|.+.|++++|.++
T Consensus        16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y   93 (152)
T 1pc2_A           16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY   93 (152)
T ss_dssp             HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHH
Confidence            34444554444443 45566666666666665   4456666776666553 12  233444455566677777777777


Q ss_pred             HHHHHHcC
Q 018582          255 LEKAIDTG  262 (353)
Q Consensus       255 ~~~~~~~~  262 (353)
                      ++.+++..
T Consensus        94 ~~~lL~ie  101 (152)
T 1pc2_A           94 VRGLLQTE  101 (152)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhcC
Confidence            77777665

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.62  E-value=0.037  Score=36.43  Aligned_cols=28  Identities=21%  Similarity=0.195  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 018582           93 TTFSNLASIYVEAGLFEKAERALKELEN  120 (353)
Q Consensus        93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~  120 (353)
                      .++..|..++.+.|+++.|...+++...
T Consensus        47 ~i~~~L~~~~~~~g~~~~A~~~~~~al~   74 (104)
T 2v5f_A           47 SVLDYLSYAVYQQGDLDKALLLTKKLLE   74 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            3444444444444444444444444443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.60  E-value=0.036  Score=43.79  Aligned_cols=85  Identities=15%  Similarity=0.082  Sum_probs=57.3

Q ss_pred             hhHHHHHHHHHHHcCCCCCc---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcc-CC
Q 018582           72 ISGAERVIEEMKRDGRVAAD---WTTFSNLASIYVE-----AGLFEKAERALKELENRNAHRDLSAYQFLITLYGQT-GN  142 (353)
Q Consensus        72 ~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~  142 (353)
                      ...|...+++..+.   .|+   -..|..|...|.+     .|+.++|.+.|++..+.++.-+..++......++.. |+
T Consensus       179 l~~A~a~lerAleL---DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd  255 (301)
T 3u64_A          179 VHAAVMMLERACDL---WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN  255 (301)
T ss_dssp             HHHHHHHHHHHHHH---CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred             HHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence            34566667777764   344   4567777777777     377777777777777765543466666777777764 77


Q ss_pred             HHHHHHHHHHHHHhCCC
Q 018582          143 LSEVYRIWRSLRLAFPN  159 (353)
Q Consensus       143 ~~~a~~~~~~~~~~~~~  159 (353)
                      .+++.+.+++.....+.
T Consensus       256 ~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          256 RAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHHHHcCCCC
Confidence            77777777777776554

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=96.59  E-value=9.3e-06  Score=68.14  Aligned_cols=251  Identities=10%  Similarity=0.045  Sum_probs=166.0

Q ss_pred             CchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 018582           20 SSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLA   99 (353)
Q Consensus        20 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~   99 (353)
                      .+..|..|..+....++..+|++.|-   +.   -|+..|..++.++.+.|.+++-.+.+...++.. -.|...  +.|+
T Consensus        53 ~p~VWs~LgkAqL~~~~v~eAIdsyI---kA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~-ke~~ID--teLi  123 (624)
T 3lvg_A           53 EPAVWSQLAKAQLQKGMVKEAIDSYI---KA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA-RESYVE--TELI  123 (624)
T ss_dssp             CCCCSSSHHHHTTTSSSCTTTTTSSC---CC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC-CSTTTT--HHHH
T ss_pred             CccHHHHHHHHHHccCchHHHHHHHH---hC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccH--HHHH
Confidence            45678999999999999998887762   22   367788999999999999999999998877754 444444  4899


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH--------------------hCCC
Q 018582          100 SIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRL--------------------AFPN  159 (353)
Q Consensus       100 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------------------~~~~  159 (353)
                      -+|++.++..+-++++.       .|+..-...+.+-|...|.++.|.-+|..+..                    ..-.
T Consensus       124 ~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKA  196 (624)
T 3lvg_A          124 FALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA  196 (624)
T ss_dssp             HHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTC
T ss_pred             HHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999998776554432       24554555666666666666666665554311                    1112


Q ss_pred             CChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHH
Q 018582          160 TANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFS  239 (353)
Q Consensus       160 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li  239 (353)
                      .++.||..+-.+|...+.+.-|.-.--.+.-..-.     ...++..|-..|.+++.+.+++.-... -......|+.|.
T Consensus       197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIvhade-----L~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELa  270 (624)
T 3lvg_A          197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE-----LEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELA  270 (624)
T ss_dssp             CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSC-----CSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHH
T ss_pred             CChhHHHHHHHHHhCchHHHHHHHhcchhcccHHH-----HHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHH
Confidence            46678999999999999988876665554432211     124677788889999999888887643 244677888888


Q ss_pred             HHHHccCChHHHHHHHHHHHHc-CCCCCCCCcccHHHHHHHHHHHHhcCChhhHH
Q 018582          240 DYYLRNGDMKLAVDCLEKAIDT-GRGDGGKWVPSSETIRTFMRHFEQEKDVDGAE  293 (353)
Q Consensus       240 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  293 (353)
                      -.|++- ++++..+.++..... +++.--...-....|.-++-.|.+-.+++.|.
T Consensus       271 ILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~  324 (624)
T 3lvg_A          271 ILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI  324 (624)
T ss_dssp             HHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence            877765 556555555443222 22100000012345677777777777777654

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.45  E-value=0.048  Score=43.08  Aligned_cols=92  Identities=16%  Similarity=0.213  Sum_probs=73.4

Q ss_pred             hHHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHcc-----CChHHHHHHHHHHHHcCCCCCCCCcc--cHHHHHHHHHH
Q 018582          213 LENAEELKERARRRGADPN---AKTWEIFSDYYLRN-----GDMKLAVDCLEKAIDTGRGDGGKWVP--SSETIRTFMRH  282 (353)
Q Consensus       213 ~~~a~~~~~~~~~~~~~p~---~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~  282 (353)
                      ...|...+++..+.  .|+   -..|..+...|...     |+.++|.+.|++.++.+        |  +..++..+...
T Consensus       179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln--------P~~~id~~v~YA~~  248 (301)
T 3u64_A          179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC--------SAHDPDHHITYADA  248 (301)
T ss_dssp             HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC--------CTTCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC--------CCCCchHHHHHHHH
Confidence            46777778887775  455   45788888888884     99999999999999987        6  37788888888


Q ss_pred             HHhc-CChhhHHHHHHHHHhcCCC--CChhhhHHH
Q 018582          283 FEQE-KDVDGAEGFLEILKKAVDD--LGVEVFEPL  314 (353)
Q Consensus       283 ~~~~-~~~~~a~~~~~~~~~~~~~--~~~~~~~~l  314 (353)
                      +++. |+.+.+.+.+++.....+.  |+....+.+
T Consensus       249 l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~  283 (301)
T 3u64_A          249 LCIPLNNRAGFDEALDRALAIDPESVPHNKLLVIL  283 (301)
T ss_dssp             TTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred             HHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence            8884 9999999999999998876  554444443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.42  E-value=0.13  Score=35.97  Aligned_cols=104  Identities=17%  Similarity=0.216  Sum_probs=65.8

Q ss_pred             CCchhHHHHHHHHHhcCCc------chHHHHHHHHHHCCCCCCcc-hHHHHHHH------HHhcCChhHHHHHHHHHHHc
Q 018582           19 FSSMPFNSLMTLYAKTGHP------EKIPAIIQEMKASSIMPDSY-TYNVWMRA------LAAVNDISGAERVIEEMKRD   85 (353)
Q Consensus        19 ~~~~~~~~ll~~~~~~~~~------~~a~~~~~~m~~~~~~p~~~-~~~~ll~~------~~~~~~~~~a~~~~~~~~~~   85 (353)
                      .|..+|-..+...-+.|++      ++..++|++.... ++|+.. .|...+..      +...+|++.|.++|+.+++.
T Consensus        11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~   89 (161)
T 4h7y_A           11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN   89 (161)
T ss_dssp             CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            4667777777777777888      7777888877764 566532 11111111      12336777777777777654


Q ss_pred             CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCC
Q 018582           86 GRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHR  125 (353)
Q Consensus        86 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  125 (353)
                      . -.- ..+|......-.+.|++..|.+++......++.|
T Consensus        90 h-KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~  127 (161)
T 4h7y_A           90 C-KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP  127 (161)
T ss_dssp             C-TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred             h-HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence            3 233 6666666666677777777777777777666553

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.35  E-value=0.061  Score=39.02  Aligned_cols=101  Identities=15%  Similarity=0.132  Sum_probs=50.3

Q ss_pred             HHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHH
Q 018582           65 ALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLS  144 (353)
Q Consensus        65 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  144 (353)
                      ...+.|+++.|.++.+.+       .+...|..|.....+.|+++-|.+.|....      |   +..+.-.|...|+.+
T Consensus        14 LAL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~------D---~~~L~~Ly~~tg~~e   77 (177)
T 3mkq_B           14 LALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQH------S---FDKLSFLYLVTGDVN   77 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT------C---HHHHHHHHHHHTCHH
T ss_pred             HHHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC------C---HHHHHHHHHHhCCHH
Confidence            344556666666554433       234455566666666666666666665542      1   233333444455555


Q ss_pred             HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHH
Q 018582          145 EVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKE  187 (353)
Q Consensus       145 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  187 (353)
                      +..++-+.....|-      ++....++.-.|+++++.++|.+
T Consensus        78 ~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~  114 (177)
T 3mkq_B           78 KLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAE  114 (177)
T ss_dssp             HHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHH
Confidence            55444444333331      22333344455666666666543

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.14  E-value=0.24  Score=35.99  Aligned_cols=104  Identities=15%  Similarity=0.081  Sum_probs=71.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 018582           98 LASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKD  177 (353)
Q Consensus        98 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  177 (353)
                      -.....+.|+++.|.++.+.+      -+...|..|.......|+++-|.+.|.+..         -+..+.-.|...|+
T Consensus        11 rF~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~---------D~~~L~~Ly~~tg~   75 (177)
T 3mkq_B           11 RFDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH---------SFDKLSFLYLVTGD   75 (177)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT---------CHHHHHHHHHHHTC
T ss_pred             HHHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC---------CHHHHHHHHHHhCC
Confidence            345566778888888887765      266788888888888888888888888652         13345555666777


Q ss_pred             hhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHH
Q 018582          178 LPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKER  222 (353)
Q Consensus       178 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  222 (353)
                      .+...++-+.....| .     ++.....+.-.|+++++.++|.+
T Consensus        76 ~e~L~kla~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~  114 (177)
T 3mkq_B           76 VNKLSKMQNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAE  114 (177)
T ss_dssp             HHHHHHHHHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence            777666655555444 2     24445556667888888888755

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.09  E-value=0.15  Score=34.67  Aligned_cols=90  Identities=12%  Similarity=0.042  Sum_probs=56.2

Q ss_pred             ChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHH---HHHHHHHHHHcCCCCCCCCcc--cHHHHHHHHHHHHhc
Q 018582          212 RLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKL---AVDCLEKAIDTGRGDGGKWVP--SSETIRTFMRHFEQE  286 (353)
Q Consensus       212 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~  286 (353)
                      ....+.+-|.+....|. |+..+--.+..++.+..+...   ++.+++.+.+.+       .|  .......|.-++.+.
T Consensus        16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-------~p~~~Rd~lY~LAvg~ykl   87 (126)
T 1nzn_A           16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-------SKEEQRDYVFYLAVGNYRL   87 (126)
T ss_dssp             HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-------CHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-------CcchHHHHHHHHHHHHHHh
Confidence            34445555555544443 566666666677777665554   777777776654       13  234555566677788


Q ss_pred             CChhhHHHHHHHHHhcCCCCChhh
Q 018582          287 KDVDGAEGFLEILKKAVDDLGVEV  310 (353)
Q Consensus       287 ~~~~~a~~~~~~~~~~~~~~~~~~  310 (353)
                      |+++.|.+.++.+.+..| .|..+
T Consensus        88 g~Y~~A~~~~~~lL~~eP-~n~QA  110 (126)
T 1nzn_A           88 KEYEKALKYVRGLLQTEP-QNNQA  110 (126)
T ss_dssp             TCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred             hhHHHHHHHHHHHHHhCC-CCHHH
Confidence            888888888888877776 45443

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=95.62  E-value=7.5e-06  Score=68.71  Aligned_cols=240  Identities=12%  Similarity=0.075  Sum_probs=126.6

Q ss_pred             CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHH
Q 018582           55 DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLI  134 (353)
Q Consensus        55 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  134 (353)
                      .+..|..+..+....+.+.+|++.|   ++    .-|...|..++....+.|.+++-.+.+...++..-  ++..=+.|+
T Consensus        53 ~p~VWs~LgkAqL~~~~v~eAIdsy---Ik----A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi  123 (624)
T 3lvg_A           53 EPAVWSQLAKAQLQKGMVKEAIDSY---IK----ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELI  123 (624)
T ss_dssp             CCCCSSSHHHHTTTSSSCTTTTTSS---CC----CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHH
T ss_pred             CccHHHHHHHHHHccCchHHHHHHH---Hh----CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHH
Confidence            3456677777777777666666554   11    22334455677777777777777777665554322  333445677


Q ss_pred             HHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcC--------------------CC
Q 018582          135 TLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGC--------------------AT  194 (353)
Q Consensus       135 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------~~  194 (353)
                      -+|.+.++..+..+++.       .||..-...+.+-|...|.++.|.-+|..+....                    -.
T Consensus       124 ~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKA  196 (624)
T 3lvg_A          124 FALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA  196 (624)
T ss_dssp             HHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTC
T ss_pred             HHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            77777777665444332       3566566667777777777777776666532110                    01


Q ss_pred             CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHH
Q 018582          195 YDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSE  274 (353)
Q Consensus       195 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  274 (353)
                      -++.+|..+-.+|...+.+.-|...--.+.   +.|  .-...++..|...|.+++-+.+++..+...       .....
T Consensus       197 ns~ktWKeV~~ACvd~~EfrLAqicGLniI---vha--deL~elv~~YE~~G~f~ELIsLlEaglglE-------rAHmG  264 (624)
T 3lvg_A          197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHA--DELEELINYYQDRGYFEELITMLEAALGLE-------RAHMG  264 (624)
T ss_dssp             CSSCSHHHHTHHHHHSCTTTTTTHHHHHHH---CCS--SCCSGGGSSSSTTCCCTTSTTTHHHHTTST-------TCCHH
T ss_pred             CChhHHHHHHHHHhCchHHHHHHHhcchhc---ccH--HHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-------chhHH
Confidence            134455555555555555444433322222   222  223344455555566666666655544321       24556


Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChHHHH
Q 018582          275 TIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVML  329 (353)
Q Consensus       275 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~  329 (353)
                      +|+-|.-.|++- ++++..+.++..-.      ..---.++++|.+..-|.+.+|
T Consensus       265 mFTELaILYsKY-~PeKlmEHlklf~s------riNipKviracE~ahLW~Elvf  312 (624)
T 3lvg_A          265 MFTELAILYSKF-KPQKMREHLELFWS------RVNIPKVLRAAEQAHLWAELVF  312 (624)
T ss_dssp             HHHHHHHHHHSS-CTTHHHHHHTTSSS------SSCCTTTHHHHTTTTCHHHHHH
T ss_pred             HHHHHHHHHHhc-CHHHHHHHHHHHHH------hccHHHHHHHHHHHhhHHHHHH
Confidence            666666666665 34433333332111      1112235566666555666555

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=95.51  E-value=0.18  Score=34.22  Aligned_cols=20  Identities=20%  Similarity=0.039  Sum_probs=8.7

Q ss_pred             HHHhcCChhHHHHHHHHHHh
Q 018582          171 VLVNLKDLPGAEKCFKEWES  190 (353)
Q Consensus       171 ~~~~~~~~~~a~~~~~~~~~  190 (353)
                      ++.+.|++++|.+.++.+.+
T Consensus        83 g~yklg~Y~~A~~~~~~lL~  102 (126)
T 1nzn_A           83 GNYRLKEYEKALKYVRGLLQ  102 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHH
Confidence            34444444444444444443

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=95.42  E-value=1.7  Score=40.62  Aligned_cols=248  Identities=14%  Similarity=0.048  Sum_probs=130.9

Q ss_pred             HHhcCChhHHHHHHHHHHHcC-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccC-------CCCHHHHHHHHHHH
Q 018582           66 LAAVNDISGAERVIEEMKRDG-RVAADWTTFSNLASIYVEAGLFEKAERALKELENRNA-------HRDLSAYQFLITLY  137 (353)
Q Consensus        66 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~  137 (353)
                      ....|+.++++.++......+ ...+....-..+.-+....|..+++..++.......-       .+....-..+.-++
T Consensus       384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl  463 (963)
T 4ady_A          384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL  463 (963)
T ss_dssp             HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred             hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence            445567777766666544321 0112222323444555666666677777776554321       01111222232333


Q ss_pred             HccCC-HHHHHHHHHHHHHhCCCCChh--HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChH
Q 018582          138 GQTGN-LSEVYRIWRSLRLAFPNTANI--SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLE  214 (353)
Q Consensus       138 ~~~~~-~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  214 (353)
                      .-.|. -+++.+.+..+..... +...  .-..+...+...|+.+....+++.+.+.. .-+..-...+.-++...|+.+
T Consensus       464 a~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e  541 (963)
T 4ady_A          464 AAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQE  541 (963)
T ss_dssp             HSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGG
T ss_pred             HhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChH
Confidence            33332 2455555555544321 1111  11233444556788887888888776543 223333333334445678888


Q ss_pred             HHHHHHHHHHhcCCCCChhhHH--HHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhH
Q 018582          215 NAEELKERARRRGADPNAKTWE--IFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGA  292 (353)
Q Consensus       215 ~a~~~~~~~~~~~~~p~~~~~~--~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  292 (353)
                      .+..+.+.+... ..|....-.  .+.-+|+..|+.....+++..+....       ..+......+.-++...|+.+.+
T Consensus       542 ~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-------~d~VRraAViaLGlI~~g~~e~v  613 (963)
T 4ady_A          542 LADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-------NDDVRRAAVIALGFVLLRDYTTV  613 (963)
T ss_dssp             GGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-------CHHHHHHHHHHHHHHTSSSCSSH
T ss_pred             HHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-------cHHHHHHHHHHHHhhccCCHHHH
Confidence            888888888764 223222222  33446677888877777888887753       13344444444456667787777


Q ss_pred             HHHHHHHHhcCCCCChhhhHHHHHHHHHcCCC
Q 018582          293 EGFLEILKKAVDDLGVEVFEPLIRTYAAAGRT  324 (353)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  324 (353)
                      .++++.+.+.+- |...--..+..+....|..
T Consensus       614 ~rlv~~L~~~~d-~~VR~gAalALGli~aGn~  644 (963)
T 4ady_A          614 PRIVQLLSKSHN-AHVRCGTAFALGIACAGKG  644 (963)
T ss_dssp             HHHTTTGGGCSC-HHHHHHHHHHHHHHTSSSC
T ss_pred             HHHHHHHHhcCC-HHHHHHHHHHHHHhccCCC
Confidence            777776655443 5555445555555555553

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=95.29  E-value=1.9  Score=40.35  Aligned_cols=156  Identities=9%  Similarity=0.028  Sum_probs=84.9

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHH--HHHHccCCHHHHHHHHHHHHHhCCCCChhHHH---HHHHHHH
Q 018582           99 ASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLI--TLYGQTGNLSEVYRIWRSLRLAFPNTANISYL---NMIQVLV  173 (353)
Q Consensus        99 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l~~~~~  173 (353)
                      ...+.-.|+-+....++..+.+..   +......+.  -++...|+.+.+..+.+.+... ..|.. -|.   ++.-+|+
T Consensus       497 Gli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~v-Rygaa~alglAya  571 (963)
T 4ady_A          497 GLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLAS-DESLL-RYGGAFTIALAYA  571 (963)
T ss_dssp             HHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHHH-HHHHHHHHHHHTT
T ss_pred             hhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHHH-HHHHHHHHHHHhc
Confidence            333445666666666666655421   222222233  3344677777777777776653 11222 222   3344566


Q ss_pred             hcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCh-HHHH
Q 018582          174 NLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDM-KLAV  252 (353)
Q Consensus       174 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~-~~a~  252 (353)
                      ..|+.....++++.+.... ..+++....+.-++...|+.+.+.+++..+.+.+ .|....-..+.-+....|.. .+++
T Consensus       572 GTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~ai  649 (963)
T 4ady_A          572 GTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAI  649 (963)
T ss_dssp             TSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHH
T ss_pred             CCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHH
Confidence            7778777777777777543 3344433333334445666666677776655543 44444444444444444443 5677


Q ss_pred             HHHHHHHHc
Q 018582          253 DCLEKAIDT  261 (353)
Q Consensus       253 ~~~~~~~~~  261 (353)
                      +.+..+...
T Consensus       650 d~L~~L~~D  658 (963)
T 4ady_A          650 DVLDPLTKD  658 (963)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHccC
Confidence            788887654

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=95.28  E-value=0.43  Score=32.77  Aligned_cols=140  Identities=14%  Similarity=0.050  Sum_probs=96.9

Q ss_pred             HHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHH
Q 018582          137 YGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENA  216 (353)
Q Consensus       137 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a  216 (353)
                      ..-.|..++..++..+.....   +..-|+.+|--....-+-+-..++++.+-+.   .|.          ..+|+....
T Consensus        17 ~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrV   80 (172)
T 1wy6_A           17 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSV   80 (172)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHH
T ss_pred             HHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHH
Confidence            344678888888888776542   4456677776666666666666666665432   121          234555555


Q ss_pred             HHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHH
Q 018582          217 EELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFL  296 (353)
Q Consensus       217 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  296 (353)
                      ...+-.+-     .+.......++.+...|.-++-.+++..+....       .|++.....+..+|.+.|+..+|.+++
T Consensus        81 i~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~-------~~~~~~l~kia~Ay~Klg~~r~a~eLl  148 (172)
T 1wy6_A           81 VECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-------EVSASILVAIANALRRVGDERDATTLL  148 (172)
T ss_dssp             HHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-------CSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhccC-------CCChHHHHHHHHHHHHhcchhhHHHHH
Confidence            44444322     245667777888889999999999998865542       388899999999999999999999999


Q ss_pred             HHHHhcCC
Q 018582          297 EILKKAVD  304 (353)
Q Consensus       297 ~~~~~~~~  304 (353)
                      +++-+.|.
T Consensus       149 ~~AC~kG~  156 (172)
T 1wy6_A          149 IEACKKGE  156 (172)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHHhhh
Confidence            99988887

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.14  E-value=0.23  Score=45.29  Aligned_cols=126  Identities=9%  Similarity=-0.003  Sum_probs=75.8

Q ss_pred             HHHHHHHHhcCC-hHHHHHHHHHHHhcCCCCChhh--HHHHHHHHHccCC-hHHHHHHHHHHHHc------CCCCCCC--
Q 018582          201 NVMIGAYAKEGR-LENAEELKERARRRGADPNAKT--WEIFSDYYLRNGD-MKLAVDCLEKAIDT------GRGDGGK--  268 (353)
Q Consensus       201 ~~li~~~~~~g~-~~~a~~~~~~~~~~~~~p~~~~--~~~li~~~~~~~~-~~~a~~~~~~~~~~------~~~~~~~--  268 (353)
                      ..++..+...++ ++.|..+|+++.+..  |....  ...++..+...++ --+|.+++.+.++.      ..++...  
T Consensus       252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~  329 (754)
T 4gns_B          252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS  329 (754)
T ss_dssp             HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred             HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence            445555555556 577888999888763  33222  2233333333332 22455555554431      1110000  


Q ss_pred             --Ccc-cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChHHHH
Q 018582          269 --WVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVML  329 (353)
Q Consensus       269 --~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~  329 (353)
                        ..| +......=..-+...|+++.|+++-++....-| .+..+|..|..+|.+.|++..|++
T Consensus       330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aP-seF~tW~~La~vYi~l~d~e~ALL  392 (754)
T 4gns_B          330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELAL-DSFESWYNLARCHIKKEEYEKALF  392 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCc-hhhHHHHHHHHHHHHhccHHHHHH
Confidence              000 011122223346678999999999999999998 899999999999999999888885

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.09  E-value=0.51  Score=43.09  Aligned_cols=128  Identities=13%  Similarity=0.112  Sum_probs=81.3

Q ss_pred             HHHHHHHHHhcCC-hhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC-hHHHHHHHHHHHhc------CCCC-Chh--
Q 018582          165 YLNMIQVLVNLKD-LPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGR-LENAEELKERARRR------GADP-NAK--  233 (353)
Q Consensus       165 ~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~------~~~p-~~~--  233 (353)
                      ...++..+...++ .+.|..+++++.+..+.-+......++..+...++ --+|.+++.+..+.      ...+ +..  
T Consensus       251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~  330 (754)
T 4gns_B          251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA  330 (754)
T ss_dssp             HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred             HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence            3455666666666 47788889888876543232222333333333332 22455555554321      1111 111  


Q ss_pred             --------hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc-HHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 018582          234 --------TWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILK  300 (353)
Q Consensus       234 --------~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~  300 (353)
                              ....=.+-|...|+++.|+++-++....-        |+ -.+|..|..+|...|+++.|+-.++.+.
T Consensus       331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a--------PseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA--------LDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC--------chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence                    11112344667899999999999999875        65 7899999999999999999999988763

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.40  E-value=2.1  Score=36.55  Aligned_cols=99  Identities=13%  Similarity=0.115  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCC---hhhHHHHHHHHHccCChHHHHHHHHHHHHc--CCCCCCCCcc
Q 018582          199 VTNVMIGAYAKEGRLENAEELKERARRR--GADPN---AKTWEIFSDYYLRNGDMKLAVDCLEKAIDT--GRGDGGKWVP  271 (353)
Q Consensus       199 ~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~  271 (353)
                      ....|...|...|++.+|..++.++...  |..+.   ...+..-++.|...+++.+|..++.++...  ...    ..|
T Consensus       139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~----~~~  214 (445)
T 4b4t_P          139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNP----KYE  214 (445)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSS----CCH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccC----CcH
Confidence            3456778888888888888888887632  22111   245666677888889999998888876432  110    113


Q ss_pred             c--HHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 018582          272 S--SETIRTFMRHFEQEKDVDGAEGFLEILKK  301 (353)
Q Consensus       272 ~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  301 (353)
                      +  ...+...+..+...+++.+|.+.|.++.+
T Consensus       215 ~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~  246 (445)
T 4b4t_P          215 SLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ  246 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            2  24456666777778888888777766543

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.18  E-value=0.47  Score=39.76  Aligned_cols=70  Identities=10%  Similarity=-0.013  Sum_probs=41.9

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHH-----hcCCCCcHHHH
Q 018582          130 YQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWE-----SGCATYDIRVT  200 (353)
Q Consensus       130 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~  200 (353)
                      ...++..+...|++.+++..+..+....+ .+...+..++.++.+.|+..+|.+.|+...     +.|+.|...+-
T Consensus       174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~  248 (388)
T 2ff4_A          174 HTAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR  248 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence            34455556666666666666666655543 355566666666666666666666666643     24666655443

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=93.92  E-value=0.76  Score=29.57  Aligned_cols=64  Identities=19%  Similarity=0.250  Sum_probs=50.1

Q ss_pred             ChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHH
Q 018582          247 DMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRT  317 (353)
Q Consensus       247 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  317 (353)
                      |.-+..+-++.+....      +.|++.+..+.+++|.+.+++..|.++++-++..-- ....+|..+++-
T Consensus        25 D~~e~rrglN~l~~~D------lVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~-~~~~iY~~~lqE   88 (109)
T 1v54_E           25 DAWELRKGMNTLVGYD------LVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG-PHKEIYPYVIQE   88 (109)
T ss_dssp             CHHHHHHHHHHHTTSS------BCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCTTHHHHHHHH
T ss_pred             cHHHHHHHHHHHhccc------cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc-CchhhHHHHHHH
Confidence            4445666677777666      679999999999999999999999999998887554 445567777654

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.85  E-value=2.8  Score=35.84  Aligned_cols=153  Identities=8%  Similarity=0.059  Sum_probs=85.1

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHh--cCCCCc---HHHHHHHHHHHHhcCChHHHHHHHHHHHh----cCCCCC--hhh
Q 018582          166 LNMIQVLVNLKDLPGAEKCFKEWES--GCATYD---IRVTNVMIGAYAKEGRLENAEELKERARR----RGADPN--AKT  234 (353)
Q Consensus       166 ~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~p~--~~~  234 (353)
                      ..+...+...|++.+|..++..+..  .+....   ...+...++.|...+++.+|..++.++..    ....|+  ...
T Consensus       141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~  220 (445)
T 4b4t_P          141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY  220 (445)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence            4566777778888888888877652  221111   35566677788888888888888887642    211222  134


Q ss_pred             HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHH----HHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhh
Q 018582          235 WEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETI----RTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEV  310 (353)
Q Consensus       235 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  310 (353)
                      +...+..+...+++.+|...|.++.....     ...+...+    ..++.+..-.+..+.-..++.........++...
T Consensus       221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~~~-----~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~  295 (445)
T 4b4t_P          221 YNLLVKISLHKREYLEVAQYLQEIYQTDA-----IKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLES  295 (445)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHHHH-----HHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhccc-----ccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHH
Confidence            56666777788888888888777765410     00122211    2222222222222222233333322222256777


Q ss_pred             hHHHHHHHHHcCC
Q 018582          311 FEPLIRTYAAAGR  323 (353)
Q Consensus       311 ~~~l~~~~~~~g~  323 (353)
                      |..|+.+|....-
T Consensus       296 ~~~L~k~f~~~~L  308 (445)
T 4b4t_P          296 QESLVKLFTTNEL  308 (445)
T ss_dssp             HHHHHHHHHHCCS
T ss_pred             HHHHHHHHHhchH
Confidence            8888888876443

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=93.59  E-value=2.3  Score=35.62  Aligned_cols=70  Identities=14%  Similarity=0.092  Sum_probs=50.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-----hCCCCChhHH
Q 018582           95 FSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRL-----AFPNTANISY  165 (353)
Q Consensus        95 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~  165 (353)
                      ...++..+...|++++|...+..+....+- +...|..+|.++.+.|+..+|++.|+.+..     -|+.|+..+-
T Consensus       174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~  248 (388)
T 2ff4_A          174 HTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR  248 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence            345667777788888888777777665443 677788888888888888888888877543     3777766653

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=93.06  E-value=1.1  Score=28.83  Aligned_cols=62  Identities=10%  Similarity=0.093  Sum_probs=40.2

Q ss_pred             hhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 018582          178 LPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSD  240 (353)
Q Consensus       178 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~  240 (353)
                      .-+..+-++.+......|++.+..+.+++|.+.+++..|.++|+.++.+ +.+...+|..+++
T Consensus        26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq   87 (109)
T 1v54_E           26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ   87 (109)
T ss_dssp             HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence            3345666666666677777777777777777777777777777777654 2233344555543

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=92.91  E-value=7.4  Score=37.91  Aligned_cols=189  Identities=11%  Similarity=0.023  Sum_probs=113.4

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhc----C----------------
Q 018582          133 LITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESG----C----------------  192 (353)
Q Consensus       133 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~----------------  192 (353)
                      ++..+...+.++-+.++...     ...+....-.+..++...|++++|.+.|.+....    .                
T Consensus       818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~  892 (1139)
T 4fhn_B          818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY  892 (1139)
T ss_dssp             HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred             HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence            34445555555555443322     2223333345667788899999999999774210    0                


Q ss_pred             --CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC
Q 018582          193 --ATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNA----KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDG  266 (353)
Q Consensus       193 --~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~  266 (353)
                        ...-..-|..++..+-+.+.++.+.++-....+....-+.    ..|..++..+...|++++|...+-.+....    
T Consensus       893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~----  968 (1139)
T 4fhn_B          893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP----  968 (1139)
T ss_dssp             TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS----
T ss_pred             cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH----
Confidence              0112245778888888999999999888776654221121    257888999999999999999988776654    


Q ss_pred             CCCcccHHHHHHHHHHHHhcCChhh------------HHHHHHH-HHhc-CCCCChhhhHHHHHHHHHcCC---ChHHHH
Q 018582          267 GKWVPSSETIRTFMRHFEQEKDVDG------------AEGFLEI-LKKA-VDDLGVEVFEPLIRTYAAAGR---TSPVML  329 (353)
Q Consensus       267 ~~~~~~~~~~~~l~~~~~~~~~~~~------------a~~~~~~-~~~~-~~~~~~~~~~~l~~~~~~~g~---~~~~~~  329 (353)
                          --...+..|+...+..|..+.            ..+++.. ++.. .+...+.-|..|-.-+...|+   .|+.++
T Consensus       969 ----~r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmY 1044 (1139)
T 4fhn_B          969 ----LKKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIY 1044 (1139)
T ss_dssp             ----SCHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHH
Confidence                335667777776666555443            3333322 1112 221223346666666677777   344455


Q ss_pred             HHHHh
Q 018582          330 RRLKM  334 (353)
Q Consensus       330 ~~m~~  334 (353)
                      +...+
T Consensus      1045 e~~~R 1049 (1139)
T 4fhn_B         1045 EKLSR 1049 (1139)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            54443

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=92.66  E-value=8  Score=37.68  Aligned_cols=191  Identities=12%  Similarity=0.047  Sum_probs=114.2

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCC----------------
Q 018582           61 VWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAH----------------  124 (353)
Q Consensus        61 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------------  124 (353)
                      .++..+...+..+.+.++...      .+.+...--.+..+|...|++++|...|.+... |+.                
T Consensus       817 ~l~~~l~~~~~~~~~~~l~~~------~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~  889 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQLIGW------LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIA  889 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHHHHHH------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhh------ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccc
Confidence            455556666777666554332      233444445677888899999999999976521 110                


Q ss_pred             -------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCCh----hHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 018582          125 -------RDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTAN----ISYLNMIQVLVNLKDLPGAEKCFKEWESGCA  193 (353)
Q Consensus       125 -------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  193 (353)
                             .-..-|..++..+.+.+.++.+.++-....+.....+.    ..|..+.+++...|++++|...+-.+.....
T Consensus       890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~  969 (1139)
T 4fhn_B          890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL  969 (1139)
T ss_dssp             HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred             ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence                   01234677788888888888888887766654322222    2577888889999999999888877765443


Q ss_pred             CCcHHHHHHHHHHHHhcCChHHH------------HHHHHHHHh-c-CCCCChhhHHHHHHHHHccCChHHHHH-HHHHH
Q 018582          194 TYDIRVTNVMIGAYAKEGRLENA------------EELKERARR-R-GADPNAKTWEIFSDYYLRNGDMKLAVD-CLEKA  258 (353)
Q Consensus       194 ~~~~~~~~~li~~~~~~g~~~~a------------~~~~~~~~~-~-~~~p~~~~~~~li~~~~~~~~~~~a~~-~~~~~  258 (353)
                        -......++...|..|..+.-            .+++..--+ . .+...+.-|..|-.-+..+|++.+|-. +|+.+
T Consensus       970 --r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~ 1047 (1139)
T 4fhn_B          970 --KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKL 1047 (1139)
T ss_dssp             --CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHH
Confidence              345666777777766655443            333322111 1 111112235555555566777776554 34444


Q ss_pred             HH
Q 018582          259 ID  260 (353)
Q Consensus       259 ~~  260 (353)
                      .+
T Consensus      1048 ~R 1049 (1139)
T 4fhn_B         1048 SR 1049 (1139)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=92.48  E-value=1.7  Score=29.64  Aligned_cols=63  Identities=17%  Similarity=0.229  Sum_probs=49.0

Q ss_pred             hHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHH
Q 018582          248 MKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRT  317 (353)
Q Consensus       248 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  317 (353)
                      .-+..+-++.+...+      +.|++.+....+++|.+.+|+..|.++|+-++.+-- +...+|..+++-
T Consensus        69 ~wElrrglN~l~~~D------lVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~-~~~~iY~y~lqE  131 (152)
T 2y69_E           69 AWELRKGMNTLVGYD------LVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG-PHKEIYPYVIQE  131 (152)
T ss_dssp             HHHHHHHHHHHTTSS------BCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHhccc------cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC-CchhhHHHHHHH
Confidence            334555666666666      679999999999999999999999999998887554 456668777654

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=91.81  E-value=2.1  Score=29.21  Aligned_cols=60  Identities=10%  Similarity=0.130  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 018582          180 GAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSD  240 (353)
Q Consensus       180 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~  240 (353)
                      +..+-++.+...+..|++.+..+.+++|.+.+++..|.++|+-++.+ +.+...+|..+++
T Consensus        71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq  130 (152)
T 2y69_E           71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ  130 (152)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence            45566666667777888888888888888888888888888887755 3334445655544

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=91.65  E-value=1.8  Score=30.97  Aligned_cols=31  Identities=13%  Similarity=0.069  Sum_probs=23.2

Q ss_pred             cHHHHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 018582          272 SSETIRTFMRHFEQEKDVDGAEGFLEILKKA  302 (353)
Q Consensus       272 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  302 (353)
                      +.+.---+..+|.+.+++++|..+++.+...
T Consensus       121 e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k  151 (167)
T 3ffl_A          121 EIEVKYKLAECYTVLKQDKDAIAILDGIPSR  151 (167)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred             hHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence            3445455778899999999999998876443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=91.60  E-value=2.3  Score=29.09  Aligned_cols=71  Identities=10%  Similarity=0.055  Sum_probs=45.6

Q ss_pred             CCChhhHHHHHHHHHccCC---hHHHHHHHHHHHHcCCCCCCCCcc--cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 018582          229 DPNAKTWEIFSDYYLRNGD---MKLAVDCLEKAIDTGRGDGGKWVP--SSETIRTFMRHFEQEKDVDGAEGFLEILKKAV  303 (353)
Q Consensus       229 ~p~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  303 (353)
                      .|+..+--.+..++.+..+   ..+++.+++.+.+.+        |  ....+..+.-++.+.|+++.|.+..+.+.+..
T Consensus        37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--------~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e  108 (134)
T 3o48_A           37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--------ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE  108 (134)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--------GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred             CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--------cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence            4455555555556655543   446777777777765        4  24556666667778888888888877777776


Q ss_pred             CCCCh
Q 018582          304 DDLGV  308 (353)
Q Consensus       304 ~~~~~  308 (353)
                      | .|.
T Consensus       109 P-~N~  112 (134)
T 3o48_A          109 R-NNK  112 (134)
T ss_dssp             T-TCH
T ss_pred             C-CCH
Confidence            6 443

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.02  E-value=4.4  Score=34.42  Aligned_cols=61  Identities=11%  Similarity=0.049  Sum_probs=33.3

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018582           58 TYNVWMRALAAVNDISGAERVIEEMKRDG-RVAADWTTFSNLASIYVEAGLFEKAERALKEL  118 (353)
Q Consensus        58 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  118 (353)
                      ++..+...+.+.|+++.|.+.|.++...- ...--...+-.+++.+...+++..+...+.+.
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka  194 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV  194 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            45555556666666666666666655431 01222344555566666666666666666555

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.36  E-value=4.7  Score=34.25  Aligned_cols=99  Identities=11%  Similarity=0.022  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHh---CCCCChhH--H
Q 018582           93 TTFSNLASIYVEAGLFEKAERALKELENRNAHR--DLSAYQFLITLYGQTGNLSEVYRIWRSLRLA---FPNTANIS--Y  165 (353)
Q Consensus        93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~--~  165 (353)
                      .+...+...|.+.|+++.|.+.+.++......+  -...+-.+++.+...+++..+...+.+....   +..|+...  .
T Consensus       132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk  211 (429)
T 4b4t_R          132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK  211 (429)
T ss_dssp             SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence            356679999999999999999999997644333  3567778889999999999999999987543   22222211  1


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhc
Q 018582          166 LNMIQVLVNLKDLPGAEKCFKEWESG  191 (353)
Q Consensus       166 ~~l~~~~~~~~~~~~a~~~~~~~~~~  191 (353)
                      ..-+..+...+++..|.+.|-+....
T Consensus       212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          212 TYYGIHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence            11122334568888888888776543

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=90.07  E-value=2.4  Score=30.29  Aligned_cols=63  Identities=10%  Similarity=-0.024  Sum_probs=39.3

Q ss_pred             hhHHHHHHHHHhcCCcchHHHHHHHHHHC-CCCCCc-------chHHHHHHHHHhcCChhHHHHHHHHHHH
Q 018582           22 MPFNSLMTLYAKTGHPEKIPAIIQEMKAS-SIMPDS-------YTYNVWMRALAAVNDISGAERVIEEMKR   84 (353)
Q Consensus        22 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~   84 (353)
                      .++-.-+..+...|.++.|.-+.+.+... +..|+.       .++..+.+++...+++..|...|++..+
T Consensus        21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq   91 (167)
T 3ffl_A           21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ   91 (167)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            34444566677777787777777665442 112332       1455566777777888888888877654

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=89.69  E-value=6.9  Score=31.46  Aligned_cols=118  Identities=9%  Similarity=-0.063  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHH----HHHHHHhcCCCCChhhHHHHH
Q 018582          164 SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEE----LKERARRRGADPNAKTWEIFS  239 (353)
Q Consensus       164 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~----~~~~~~~~~~~p~~~~~~~li  239 (353)
                      .|.++..=|.+.+++++|.+++..-.               ..+.+.|+...|-+    +.+...+.+.+++......++
T Consensus        35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~   99 (312)
T 2wpv_A           35 TLRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV   99 (312)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            34455666777777887777765421               22334455544444    344444566777777777777


Q ss_pred             HHHHccCChH-HHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHH
Q 018582          240 DYYLRNGDMK-LAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFL  296 (353)
Q Consensus       240 ~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  296 (353)
                      ..+..-..-+ .=.++++++++...+..+...-++.....+...|.+.|++.+|+..|
T Consensus       100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~  157 (312)
T 2wpv_A          100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF  157 (312)
T ss_dssp             HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence            6665432111 12344455544311100001246788888888999999998888755

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=89.56  E-value=3.6  Score=28.09  Aligned_cols=22  Identities=14%  Similarity=-0.014  Sum_probs=9.4

Q ss_pred             HHHHHhcCChHHHHHHHHHHHh
Q 018582          204 IGAYAKEGRLENAEELKERARR  225 (353)
Q Consensus       204 i~~~~~~g~~~~a~~~~~~~~~  225 (353)
                      .-++.+.|++++|.+..+.+.+
T Consensus        85 Avg~yklgdY~~Ar~y~d~lL~  106 (134)
T 3o48_A           85 TIGCYKLGEYSMAKRYVDTLFE  106 (134)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHT
T ss_pred             HHHHHHhhhHHHHHHHHHHHHh
Confidence            3334444444444444444443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=88.45  E-value=4.7  Score=27.95  Aligned_cols=68  Identities=10%  Similarity=0.079  Sum_probs=44.3

Q ss_pred             CCChhhHHHHHHHHHccCC---hHHHHHHHHHHHHcCCCCCCCCcc--cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 018582          229 DPNAKTWEIFSDYYLRNGD---MKLAVDCLEKAIDTGRGDGGKWVP--SSETIRTFMRHFEQEKDVDGAEGFLEILKKAV  303 (353)
Q Consensus       229 ~p~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  303 (353)
                      .|+..+--....++.+..+   ..+++.+++.+.+.+        |  .......|.-++.+.|+++.|.+..+.+.+..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~--------~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e  107 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--------ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE  107 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC--------CSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--------ccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence            4555555555666665553   446777777777765        3  34455556667778888888888888777777


Q ss_pred             C
Q 018582          304 D  304 (353)
Q Consensus       304 ~  304 (353)
                      |
T Consensus       108 P  108 (144)
T 1y8m_A          108 R  108 (144)
T ss_dssp             C
T ss_pred             C
Confidence            6

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=88.19  E-value=2.7  Score=32.77  Aligned_cols=52  Identities=17%  Similarity=0.189  Sum_probs=28.7

Q ss_pred             HhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 018582           67 AAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELEN  120 (353)
Q Consensus        67 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  120 (353)
                      .+.|++++++.....-++.  .|.|...-..|+..+|-.|+++.|.+-++...+
T Consensus         8 l~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~   59 (273)
T 1zbp_A            8 LSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIK   59 (273)
T ss_dssp             TTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            3455555555555555554  345555555555666666666666555555544

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=84.88  E-value=16  Score=30.52  Aligned_cols=234  Identities=10%  Similarity=0.061  Sum_probs=128.8

Q ss_pred             hhHHHHHHHHHhcCCcchHHHHHHHHHHC-CCCCC---cchHHHHHHHHHhc-CChhHHHHHHHHHHHcCC-CCCcH---
Q 018582           22 MPFNSLMTLYAKTGHPEKIPAIIQEMKAS-SIMPD---SYTYNVWMRALAAV-NDISGAERVIEEMKRDGR-VAADW---   92 (353)
Q Consensus        22 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~p~---~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~-~~~~~---   92 (353)
                      .+...|...|.+.|+.++..+++...... +.-|-   ......++..+... +..+.-.++..+..+... .....   
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~   99 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ   99 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567888899999999888888766432 11111   12355667766654 333444444444443210 11111   


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHHh--CCCCChhHH
Q 018582           93 TTFSNLASIYVEAGLFEKAERALKELENRNAHRD-----LSAYQFLITLYGQTGNLSEVYRIWRSLRLA--FPNTANISY  165 (353)
Q Consensus        93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~  165 (353)
                      .+=..++..|...|++.+|.+++..+.+.-...|     ...|-.-+..|...+++.++...+......  .+.+++..-
T Consensus       100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~  179 (394)
T 3txn_A          100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ  179 (394)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence            1123689999999999999999998866422222     344666677888999999999999886543  222333322


Q ss_pred             H----HHHHHHH-hcCChhHHHHHHHHHHhcCCC---C---cHHHHHHHHHHHHhcCChHHHHHHHH-HHHhcCCCCChh
Q 018582          166 L----NMIQVLV-NLKDLPGAEKCFKEWESGCAT---Y---DIRVTNVMIGAYAKEGRLENAEELKE-RARRRGADPNAK  233 (353)
Q Consensus       166 ~----~l~~~~~-~~~~~~~a~~~~~~~~~~~~~---~---~~~~~~~li~~~~~~g~~~~a~~~~~-~~~~~~~~p~~~  233 (353)
                      .    .-...+. ..+++..|...|-+..+.-..   |   +...|..+.. .. .++..+...++. .....-..|+..
T Consensus       180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~a-Ll-~~~r~el~~~l~~~~~~~~~~pei~  257 (394)
T 3txn_A          180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCK-IM-LGQSDDVNQLVSGKLAITYSGRDID  257 (394)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-HH-TTCGGGHHHHHHSHHHHTTCSHHHH
T ss_pred             HHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH-HH-cCCHHHHHHHhccccccccCCccHH
Confidence            1    1223345 789999988887765421101   1   1223322222 22 233333333322 111111245555


Q ss_pred             hHHHHHHHHHccCChHHHHHHHHHH
Q 018582          234 TWEIFSDYYLRNGDMKLAVDCLEKA  258 (353)
Q Consensus       234 ~~~~li~~~~~~~~~~~a~~~~~~~  258 (353)
                      .+..++.+| ..+++.....++...
T Consensus       258 ~l~~L~~a~-~~~dl~~f~~iL~~~  281 (394)
T 3txn_A          258 AMKSVAEAS-HKRSLADFQAALKEY  281 (394)
T ss_dssp             HHHHHHHHH-HTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHH-HhCCHHHHHHHHHHH
Confidence            566666665 445666665555543

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=84.59  E-value=22  Score=31.85  Aligned_cols=248  Identities=16%  Similarity=0.058  Sum_probs=124.4

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHc
Q 018582           60 NVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQ  139 (353)
Q Consensus        60 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  139 (353)
                      +..+..+.+.+++.....++..      .+.+...-.....+....|+..+|......+-..|.. .+..+..++..+.+
T Consensus        76 ~~~l~~l~~~~~w~~~l~~~~~------~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~  148 (618)
T 1qsa_A           76 SRFVNELARREDWRGLLAFSPE------KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRA  148 (618)
T ss_dssp             HHHHHHHHHTTCHHHHHHHCCS------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHhccC------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHH
Confidence            3445556666666655554321      2345555566777788888888888887777665543 44578888888887


Q ss_pred             cCCHHH--HHHHHHHHHHhCCCCChhHHHHHHH-----------HHHhc-CChhHHHHHHHHHHhcCCCCcHH---HHHH
Q 018582          140 TGNLSE--VYRIWRSLRLAFPNTANISYLNMIQ-----------VLVNL-KDLPGAEKCFKEWESGCATYDIR---VTNV  202 (353)
Q Consensus       140 ~~~~~~--a~~~~~~~~~~~~~~~~~~~~~l~~-----------~~~~~-~~~~~a~~~~~~~~~~~~~~~~~---~~~~  202 (353)
                      .|....  ...=++.+...+-   ...-..++.           ..... .+...+......     ..++..   .+..
T Consensus       149 ~g~lt~~~~~~R~~~al~~~~---~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~  220 (618)
T 1qsa_A          149 SGKQDPLAYLERIRLAMKAGN---TGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFART-----TGATDFTRQMAAV  220 (618)
T ss_dssp             TTCSCHHHHHHHHHHHHHTTC---HHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHH-----SCCCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhc-----cCCChhhHHHHHH
Confidence            775543  3333333333321   111111111           10000 111111111110     011111   1111


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHH----HHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHH
Q 018582          203 MIGAYAKEGRLENAEELKERARRRGADPNAKTWE----IFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRT  278 (353)
Q Consensus       203 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~----~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (353)
                      .+.-+.+ .+.+.|...+....... ..+.....    .+...+...+...++...+.......        ++.....-
T Consensus       221 ~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~e~  290 (618)
T 1qsa_A          221 AFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--------QSTSLIER  290 (618)
T ss_dssp             HHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--------CCHHHHHH
T ss_pred             HHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--------CChHHHHH
Confidence            2222333 36788888888776543 22332222    22223334443445666666654433        34433444


Q ss_pred             HHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCC--ChHHHHHHHH
Q 018582          279 FMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGR--TSPVMLRRLK  333 (353)
Q Consensus       279 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~~~~~~m~  333 (353)
                      .++...+.|+++.|...|+.|..... ......--+..++.+.|+  .+..++....
T Consensus       291 ~~r~Alr~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a  346 (618)
T 1qsa_A          291 RVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLM  346 (618)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            45555577888888888887765332 234445566667777787  3444554443

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=84.41  E-value=14  Score=29.61  Aligned_cols=113  Identities=13%  Similarity=0.089  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHH----HHHHHHHhCCCCChhHHHHHH
Q 018582           94 TFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYR----IWRSLRLAFPNTANISYLNMI  169 (353)
Q Consensus        94 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~l~  169 (353)
                      .|.++..-|.+.+++++|.+++..-.               ..+.+.|+...|-+    +.+...+.+.+++......++
T Consensus        35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~   99 (312)
T 2wpv_A           35 TLRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV   99 (312)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            34455555666677777776655421               11223344333333    233334445555555555555


Q ss_pred             HHHHhcCChh-HHHHHHHHHH----hcC--CCCcHHHHHHHHHHHHhcCChHHHHHHHH
Q 018582          170 QVLVNLKDLP-GAEKCFKEWE----SGC--ATYDIRVTNVMIGAYAKEGRLENAEELKE  221 (353)
Q Consensus       170 ~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~  221 (353)
                      ..+......+ .-.++++.+.    +.|  ..-++.....+...|.+.|++.+|..-|-
T Consensus       100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i  158 (312)
T 2wpv_A          100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM  158 (312)
T ss_dssp             HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            5554432111 1223333332    221  22367778888888888888888877664

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=82.91  E-value=18  Score=29.43  Aligned_cols=24  Identities=33%  Similarity=0.469  Sum_probs=11.4

Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHH
Q 018582          196 DIRVTNVMIGAYAKEGRLENAEEL  219 (353)
Q Consensus       196 ~~~~~~~li~~~~~~g~~~~a~~~  219 (353)
                      |+.....+...|.+.+++.+|..-
T Consensus       135 dp~LH~~ig~~~~~e~~~~~Ae~H  158 (336)
T 3lpz_A          135 DPELHHVVGTLYVEEGEFEAAEKH  158 (336)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHccCCHHHHHHH
Confidence            344444445555555555444443

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=82.47  E-value=11  Score=27.91  Aligned_cols=54  Identities=15%  Similarity=0.127  Sum_probs=27.6

Q ss_pred             hhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCC
Q 018582           72 ISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHR  125 (353)
Q Consensus        72 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  125 (353)
                      ...+..+|..|...|--.--...|......+-..|++.+|.++|+.-.+.+-.|
T Consensus        95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P  148 (202)
T 3esl_A           95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP  148 (202)
T ss_dssp             HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred             cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence            445555555555555222233444555555555555555555555555544443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=82.12  E-value=10  Score=26.26  Aligned_cols=66  Identities=15%  Similarity=0.043  Sum_probs=27.6

Q ss_pred             CcHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 018582           90 ADWTTFSNLASIYVEAGLF---EKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRL  155 (353)
Q Consensus        90 ~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  155 (353)
                      |+..+--.+.-+++++.+.   .+++.+++.+...++.......-.|.-++.+.|++++|.++.+.+.+
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~  105 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  105 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            4444433444444444432   23444444444433221222223333444455555555555554444

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=80.86  E-value=24  Score=29.53  Aligned_cols=130  Identities=12%  Similarity=0.046  Sum_probs=55.3

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc---HHHHHHHHHHHHhcCC-HHHHHHHHHHHHHccCCCCHHHH---
Q 018582           58 TYNVWMRALAAVNDISGAERVIEEMKRDGRVAAD---WTTFSNLASIYVEAGL-FEKAERALKELENRNAHRDLSAY---  130 (353)
Q Consensus        58 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~---  130 (353)
                      ....+...|.+.|+.++..+++.....--...+.   ......+++.+....+ .+.-.++..+..+..-. +-.+|   
T Consensus        21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr~   99 (394)
T 3txn_A           21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLRQ   99 (394)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            3444556666666666666666554432101121   1223445555544322 22223333332211000 11111   


Q ss_pred             ---HHHHHHHHccCCHHHHHHHHHHHHHhCCCCCh-----hHHHHHHHHHHhcCChhHHHHHHHHH
Q 018582          131 ---QFLITLYGQTGNLSEVYRIWRSLRLAFPNTAN-----ISYLNMIQVLVNLKDLPGAEKCFKEW  188 (353)
Q Consensus       131 ---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~  188 (353)
                         ..++..|...|++.+|.+++..+.+.-...|.     ..|..-+..|...+++.++...+...
T Consensus       100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a  165 (394)
T 3txn_A          100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSA  165 (394)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence               13455555666666665555555443111111     12333344455555555555555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	353
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.004
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	3e-04

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 1e-06
 Identities = 37/226 (16%), Positives = 72/226 (31%), Gaps = 11/226 (4%)

Query: 24  FNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSY-TYNVWMRALAAVNDISGAERVIEEM 82
           +++L  ++   G      AI    KA ++ P+    Y      L        A       
Sbjct: 172 WSNLGCVFNAQGEIWL--AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRA 229

Query: 83  KRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGN 142
                  A      NLA +Y E GL + A    +       H    AY  L     + G+
Sbjct: 230 LSLSPNHAVV--HGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGS 286

Query: 143 LSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNV 202
           ++E    + +     P  A+    N+  +     ++  A + +++             + 
Sbjct: 287 VAEAEDCYNTALRLCPTHADSLN-NLANIKREQGNIEEAVRLYRKALE-VFPEFAAAHSN 344

Query: 203 MIGAYAKEGRLENAEELKERARRRGADPN-AKTWEIFSDYYLRNGD 247
           +     ++G+L+ A    + A R    P  A  +    +      D
Sbjct: 345 LASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 24/144 (16%), Positives = 44/144 (30%), Gaps = 13/144 (9%)

Query: 3   EKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVW 62
           + A     +  EL   F    + +L     + G   +  A      A  + P        
Sbjct: 254 DLAIDTYRRAIELQPHFPDA-YCNLANALKEKGSVAE--AEDCYNTALRLCPTHADSLNN 310

Query: 63  M-RALAAVNDISGAERVIE---EMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKEL 118
           +        +I  A R+     E+  +          SNLAS+  + G  ++A    KE 
Sbjct: 311 LANIKREQGNIEEAVRLYRKALEVFPE-----FAAAHSNLASVLQQQGKLQEALMHYKEA 365

Query: 119 ENRNAHRDLSAYQFLITLYGQTGN 142
              +      AY  +     +  +
Sbjct: 366 IRISPT-FADAYSNMGNTLKEMQD 388

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.0 bits (92), Expect = 3e-04
 Identities = 33/270 (12%), Positives = 66/270 (24%), Gaps = 49/270 (18%)

Query: 89  AADWTTFSNLASIYVEAGLFEKA----ERALKELENRNAHRDL-SAYQFLITLYGQTGNL 143
           AAD       A+IY        A     +A    +      +  + Y      +   GN 
Sbjct: 36  AAD--LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNS 93

Query: 144 SEVYRIWRSLRLAFPNTANISYLNMIQVLVN----------LKDLPGAEKCFKEWESGCA 193
                   +    F +          +  +            K +   E   + +    +
Sbjct: 94  VNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS 153

Query: 194 TYDIRVTNVMIG-AYAKEGRLENAEELKERARRRGADPNAKTWEIFSDY------YLRNG 246
                   +      A +G+   A ++  +  +         W +   +       L   
Sbjct: 154 VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAAT 213

Query: 247 DMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDL 306
           D   A   L++                     F    E          FL+ L  AV++ 
Sbjct: 214 DAVAAARTLQEGQ--------------SEDPNFADSRESN--------FLKSLIDAVNEG 251

Query: 307 GVEVFEPLIRTYAAAGRTSPV---MLRRLK 333
             E      + +    R       +L ++K
Sbjct: 252 DSEQLSEHCKEFDNFMRLDKWKITILNKIK 281

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	353
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.94
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.92
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.77
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.77
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.54
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.52
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.45
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.43
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.42
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.41
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.4
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.33
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.31
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.31
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.05
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.03
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.94
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.92
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.88
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.85
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.82
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.79
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.78
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.72
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.7
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.64
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.55
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.55
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.54
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.54
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.46
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.44
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.44
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.42
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.39
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.32
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.3
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.28
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.27
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.25
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.23
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.22
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.22
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.19
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.17
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.07
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.01
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.99
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.97
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.92
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.86
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.62
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.61
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.44
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.92
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.89
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	96.32
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	95.42
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	95.16
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	94.85
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	93.91
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	92.96
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	83.17
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	81.6

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=7.7e-23  Score=171.82  Aligned_cols=327  Identities=12%  Similarity=0.065  Sum_probs=248.5

Q ss_pred             ChHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 018582            1 MTEKAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIE   80 (353)
Q Consensus         1 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~   80 (353)
                      .+++|++.++.+.+..+ -+..++..+...|.+.|++++|.+.|++..+.. +-+..+|..+..++...|++++|...+.
T Consensus        14 ~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A~~~~~   91 (388)
T d1w3ba_          14 DFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYR   91 (388)
T ss_dssp             CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccccccccccc
Confidence            36899999999987763 467789999999999999999999999998853 3356688899999999999999999999


Q ss_pred             HHHHcCCCCCcHHHHHHHHH----------------------------------HHHhcCCHHHHHHHHHHHHHccCCCC
Q 018582           81 EMKRDGRVAADWTTFSNLAS----------------------------------IYVEAGLFEKAERALKELENRNAHRD  126 (353)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~----------------------------------~~~~~~~~~~a~~~~~~~~~~~~~~~  126 (353)
                      ...+..  +.+.........                                  .....+....+...+.......+. +
T Consensus        92 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  168 (388)
T d1w3ba_          92 HALRLK--PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN-F  168 (388)
T ss_dssp             HHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT-C
T ss_pred             cccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcc-h
Confidence            988763  333322222222                                  222334444555555555444332 5


Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 018582          127 LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGA  206 (353)
Q Consensus       127 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  206 (353)
                      ...+..+...+...|++++|...+++..+..+ -+..++..+...+...|++++|...+++....... +...+..+...
T Consensus       169 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~  246 (388)
T d1w3ba_         169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACV  246 (388)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             hHHHHhhcccccccCcHHHHHHHHHHHHHhCc-ccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-HHHHHHHHHHH
Confidence            67777888888888888888888888877654 35567788888888888888888888888876533 66777788888


Q ss_pred             HHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhc
Q 018582          207 YAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQE  286 (353)
Q Consensus       207 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  286 (353)
                      +.+.|++++|...|++..+..+ -+..++..+...+...|++++|++.++......       +.+...+..+...+.+.
T Consensus       247 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~  318 (388)
T d1w3ba_         247 YYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-------PTHADSLNNLANIKREQ  318 (388)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHTT
T ss_pred             HHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-------CccchhhhHHHHHHHHC
Confidence            8888888888888888877632 256778888888888888888888888888775       14567778888888888


Q ss_pred             CChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChHHHHHHHHhCCCccCHhH
Q 018582          287 KDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEAS  343 (353)
Q Consensus       287 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~  343 (353)
                      |++++|.+.+++..+..| .+..+|..+..+|.+.|++.+++-..-+...+.|+...
T Consensus       319 ~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~  374 (388)
T d1w3ba_         319 GNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD  374 (388)
T ss_dssp             TCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHH
T ss_pred             CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            888888888888888877 67888888888888888877776555555566776543

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5.9e-21  Score=160.16  Aligned_cols=306  Identities=13%  Similarity=0.067  Sum_probs=248.7

Q ss_pred             HHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcC
Q 018582           27 LMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAG  106 (353)
Q Consensus        27 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  106 (353)
                      +...+.+.|++++|.+.|+++.+.. +-+...+..+..++.+.|++++|...|+++.+.  .+.+..++..+..+|.+.|
T Consensus         5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~l~~~~~~~g   81 (388)
T d1w3ba_           5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--NPLLAEAYSNLGNVYKERG   81 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHhhhhc
Confidence            4556778999999999999998753 335678888999999999999999999999987  4667889999999999999


Q ss_pred             CHHHHHHHHHHHHHccCCCCHHHH----------------------------------HHHHHHHHccCCHHHHHHHHHH
Q 018582          107 LFEKAERALKELENRNAHRDLSAY----------------------------------QFLITLYGQTGNLSEVYRIWRS  152 (353)
Q Consensus       107 ~~~~a~~~~~~~~~~~~~~~~~~~----------------------------------~~l~~~~~~~~~~~~a~~~~~~  152 (353)
                      ++++|...+.......+. +...+                                  ..........+....+...+..
T Consensus        82 ~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (388)
T d1w3ba_          82 QLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK  160 (388)
T ss_dssp             CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             cccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHH
Confidence            999999999988775443 22222                                  2222333445555566666666


Q ss_pred             HHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCh
Q 018582          153 LRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNA  232 (353)
Q Consensus       153 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~  232 (353)
                      .....+ .+...+..+...+...|++++|...+++..+..+. +...+..+...+...|++++|...+.+....+ ..+.
T Consensus       161 ~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~  237 (388)
T d1w3ba_         161 AIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA  237 (388)
T ss_dssp             HHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred             hhccCc-chhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHH
Confidence            555543 35567888889999999999999999999887644 77889999999999999999999999998764 3467


Q ss_pred             hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcc-cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhh
Q 018582          233 KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVF  311 (353)
Q Consensus       233 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  311 (353)
                      ..+..+...+.+.|++++|++.|++..+..        | +..++..+...+...|++++|.+.++......+ .+...+
T Consensus       238 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~  308 (388)
T d1w3ba_         238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ--------PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADSL  308 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--------SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCC-ccchhh
Confidence            788889999999999999999999999876        4 477899999999999999999999999999888 899999


Q ss_pred             HHHHHHHHHcCCChHHHHHHHHhCCCccCHhHHHHHH
Q 018582          312 EPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKKLLE  348 (353)
Q Consensus       312 ~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~~~~l~  348 (353)
                      ..+...+.+.|++.+++-..-+...+.|+.......+
T Consensus       309 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  345 (388)
T d1w3ba_         309 NNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNL  345 (388)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred             hHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            9999999999997777655555566778765544333

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=6.3e-16  Score=126.22  Aligned_cols=247  Identities=11%  Similarity=0.030  Sum_probs=154.2

Q ss_pred             HHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHH
Q 018582           65 ALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLS  144 (353)
Q Consensus        65 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  144 (353)
                      .+.+.|++++|...|+++.+.  .|.+..+|..+..++...|++++|...|++..+..+. +...|..+...|...|+++
T Consensus        28 ~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~  104 (323)
T d1fcha_          28 RRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESLQR  104 (323)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-ccccccccccccccccccc
Confidence            344555555555555555543  2333444555555555555555555555554443332 3444444555555555555


Q ss_pred             HHHHHHHHHHHhCCCC--------------ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHh
Q 018582          145 EVYRIWRSLRLAFPNT--------------ANISYLNMIQVLVNLKDLPGAEKCFKEWESGCA-TYDIRVTNVMIGAYAK  209 (353)
Q Consensus       145 ~a~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~  209 (353)
                      +|.+.++......+..              +.......+..+...+.+.++...+.+..+..+ ..+..++..+...+..
T Consensus       105 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~  184 (323)
T d1fcha_         105 QACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL  184 (323)
T ss_dssp             HHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH
T ss_pred             ccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence            5555555444322110              000011112233444566778888877765443 3356778888888999


Q ss_pred             cCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcc-cHHHHHHHHHHHHhcCC
Q 018582          210 EGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKD  288 (353)
Q Consensus       210 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~  288 (353)
                      .|++++|...|++...... -+...|..+...|...|++++|++.+++.++..        | +..++..+..+|.+.|+
T Consensus       185 ~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~lg~~~~~~g~  255 (323)
T d1fcha_         185 SGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAYRRALELQ--------PGYIRSRYNLGISCINLGA  255 (323)
T ss_dssp             TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHhhhhccccccccccc-ccccchhhhhhcccccccchhHHHHHHHHHHHh--------hccHHHHHHHHHHHHHCCC
Confidence            9999999999999887643 257788888999999999999999999998875        4 46788889999999999


Q ss_pred             hhhHHHHHHHHHhcCCC----------CChhhhHHHHHHHHHcCC
Q 018582          289 VDGAEGFLEILKKAVDD----------LGVEVFEPLIRTYAAAGR  323 (353)
Q Consensus       289 ~~~a~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~g~  323 (353)
                      +++|...|++.++..|.          .....|..+-.++...|+
T Consensus       256 ~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~  300 (323)
T d1fcha_         256 HREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ  300 (323)
T ss_dssp             HHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCC
Confidence            99999999988875431          112345666667776666

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=7e-16  Score=125.92  Aligned_cols=271  Identities=12%  Similarity=-0.001  Sum_probs=206.4

Q ss_pred             CchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 018582           20 SSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLA   99 (353)
Q Consensus        20 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~   99 (353)
                      +...+-.....+.+.|++++|+..|++..+.. +-+..+|..+..++...|++++|...|.+..+.  .+-+...+..+.
T Consensus        18 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la   94 (323)
T d1fcha_          18 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLEL--KPDNQTALMALA   94 (323)
T ss_dssp             TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc--cccccccccccc
Confidence            33334455667889999999999999999864 335678999999999999999999999999986  466788889999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHccCCCC--------------HHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC-CChhH
Q 018582          100 SIYVEAGLFEKAERALKELENRNAHRD--------------LSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN-TANIS  164 (353)
Q Consensus       100 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~  164 (353)
                      .+|...|++++|.+.++......+...              .......+..+...+.+.+|.+.|.+.....+. ++..+
T Consensus        95 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~  174 (323)
T d1fcha_          95 VSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV  174 (323)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHH
T ss_pred             ccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhccccccc
Confidence            999999999999999999876543210              011112223344556778899998887776542 35667


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHc
Q 018582          165 YLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLR  244 (353)
Q Consensus       165 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~  244 (353)
                      +..+...+...|++++|...+++.....+. +...|..+..+|...|++++|.+.|++..+... -+...|..+..+|.+
T Consensus       175 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~  252 (323)
T d1fcha_         175 QCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCIN  252 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHhh-ccHHHHHHHHHHHHH
Confidence            888899999999999999999999887644 788999999999999999999999999987642 256788999999999


Q ss_pred             cCChHHHHHHHHHHHHcCCCCC---C-CCcccHHHHHHHHHHHHhcCChhhHHHH
Q 018582          245 NGDMKLAVDCLEKAIDTGRGDG---G-KWVPSSETIRTFMRHFEQEKDVDGAEGF  295 (353)
Q Consensus       245 ~~~~~~a~~~~~~~~~~~~~~~---~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~  295 (353)
                      .|++++|++.|++.++......   . ........|..+-.++...|+.+.+...
T Consensus       253 ~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~  307 (323)
T d1fcha_         253 LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA  307 (323)
T ss_dssp             HTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            9999999999999888531100   0 0111234566666677767776655443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.3e-11  Score=98.02  Aligned_cols=228  Identities=11%  Similarity=0.067  Sum_probs=153.0

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 018582           58 TYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAG-LFEKAERALKELENRNAHRDLSAYQFLITL  136 (353)
Q Consensus        58 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  136 (353)
                      .|+.+...+.+.+..++|+.+++++++.  .|-+...|+....++...| ++++|+..++...+..+. +..+|..+...
T Consensus        45 a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~  121 (315)
T d2h6fa1          45 VYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL  121 (315)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHH
Confidence            4555556667777778888888888876  4666677777777777765 478888888887776554 67777777777


Q ss_pred             HHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC----
Q 018582          137 YGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGR----  212 (353)
Q Consensus       137 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----  212 (353)
                      +.+.|++++|++.++++.+..+ .+...|..+...+...|++++|.+.++++.+.++. +...|+.+...+.+.+.    
T Consensus       122 ~~~l~~~~eAl~~~~kal~~dp-~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~  199 (315)
T d2h6fa1         122 VEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR  199 (315)
T ss_dssp             HHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred             HHhhccHHHHHHHHhhhhhhhh-cchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchh
Confidence            8888888888888888777655 35677777888888888888888888888777644 66677766666666554    


Q ss_pred             --hHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhc--CC
Q 018582          213 --LENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQE--KD  288 (353)
Q Consensus       213 --~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~  288 (353)
                        +++|+..+....+..+ .+...|..+...+.. ...+++.+.++...+....     ..+...+..++..|...  +.
T Consensus       200 ~~~~~ai~~~~~al~~~P-~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~l~~~y~~~~~~~  272 (315)
T d2h6fa1         200 AVLEREVQYTLEMIKLVP-HNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPS-----HSSPYLIAFLVDIYEDMLENQ  272 (315)
T ss_dssp             HHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTT-----CCCHHHHHHHHHHHHHHHHTT
T ss_pred             hhhHHhHHHHHHHHHhCC-CchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCC-----cCCHHHHHHHHHHHHHHHhcC
Confidence              4677777777776532 256666666555444 3457777777777766421     12345555666655432  34


Q ss_pred             hhhHHHHHH
Q 018582          289 VDGAEGFLE  297 (353)
Q Consensus       289 ~~~a~~~~~  297 (353)
                      .+.+...++
T Consensus       273 ~~~~~~~~~  281 (315)
T d2h6fa1         273 CDNKEDILN  281 (315)
T ss_dssp             CSSHHHHHH
T ss_pred             HHHHHHHHH
Confidence            444444333

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.5e-11  Score=99.21  Aligned_cols=217  Identities=10%  Similarity=0.070  Sum_probs=177.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 018582           92 WTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTG-NLSEVYRIWRSLRLAFPNTANISYLNMIQ  170 (353)
Q Consensus        92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  170 (353)
                      ...++.+...+.+.+..++|+.+++++.+.++. +..+|+.....+...| ++++|+..++...+..+. +..+|.....
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~  120 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV  120 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhH
Confidence            456777888888999999999999999998766 7889999998888876 589999999999888764 6788999999


Q ss_pred             HHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCC---
Q 018582          171 VLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGD---  247 (353)
Q Consensus       171 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~---  247 (353)
                      .+.+.|++++|...++++.+..+. +...|..+...+...|++++|...++.+.+.++. +...|+.+...+.+.+.   
T Consensus       121 ~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~  198 (315)
T d2h6fa1         121 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND  198 (315)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred             HHHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccch
Confidence            999999999999999999998755 8999999999999999999999999999987533 66778777666665554   


Q ss_pred             ---hHHHHHHHHHHHHcCCCCCCCCcc-cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC-ChhhhHHHHHHHHHc
Q 018582          248 ---MKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDL-GVEVFEPLIRTYAAA  321 (353)
Q Consensus       248 ---~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~  321 (353)
                         +++|++.+.+.++..        | +...|..+...+.. ...+++.+.++...+..+.+ +...+..++..|...
T Consensus       199 ~~~~~~ai~~~~~al~~~--------P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~  268 (315)
T d2h6fa1         199 RAVLEREVQYTLEMIKLV--------PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDM  268 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred             hhhhHHhHHHHHHHHHhC--------CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHH
Confidence               678999999999987        5 46667666655544 45688889998888766543 455667777777654

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=6.7e-11  Score=95.14  Aligned_cols=191  Identities=12%  Similarity=0.062  Sum_probs=146.4

Q ss_pred             CHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHH
Q 018582          107 LFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFK  186 (353)
Q Consensus       107 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  186 (353)
                      ..++|..+|++..+..++.+...|...+..+.+.|+++.|..+|+++.+..+......|...+..+.+.|+.+.|.++|+
T Consensus        79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~  158 (308)
T d2onda1          79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            45778888888876544556777888888888999999999999988776544344578888888889999999999999


Q ss_pred             HHHhcCCCCcHHHHHHHHHH-HHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCC
Q 018582          187 EWESGCATYDIRVTNVMIGA-YAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGD  265 (353)
Q Consensus       187 ~~~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~  265 (353)
                      +..+.++. +...|...... +...|+.+.|..+|+.+.+.. +.+...|...+..+...|+++.|..+|++.++...  
T Consensus       159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~--  234 (308)
T d2onda1         159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS--  234 (308)
T ss_dssp             HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS--
T ss_pred             HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--
Confidence            98877644 44455444433 344688999999999988763 33677888899999999999999999999888642  


Q ss_pred             CCCCccc--HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 018582          266 GGKWVPS--SETIRTFMRHFEQEKDVDGAEGFLEILKKAVD  304 (353)
Q Consensus       266 ~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  304 (353)
                         ..|+  ...|...+.--...|+.+.+.++++++.+.-+
T Consensus       235 ---~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~  272 (308)
T d2onda1         235 ---LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR  272 (308)
T ss_dssp             ---SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred             ---CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence               1132  45788888877888999999999998877543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=6.1e-11  Score=95.38  Aligned_cols=221  Identities=12%  Similarity=0.047  Sum_probs=168.6

Q ss_pred             chHHHHHHHHHHCCCCCCcchHHHHHHHHHh--------------cCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHH
Q 018582           38 EKIPAIIQEMKASSIMPDSYTYNVWMRALAA--------------VNDISGAERVIEEMKRDGRVAADWTTFSNLASIYV  103 (353)
Q Consensus        38 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  103 (353)
                      +.+..+|+++... ++.+...|...+..+..              .+..++|..+|++..+.. .+.+...+...+..+.
T Consensus        33 ~Rv~~vyerAl~~-~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~-~p~~~~l~~~ya~~~~  110 (308)
T d2onda1          33 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL-LKKNMLLYFAYADYEE  110 (308)
T ss_dssp             HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT-TTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHH
Confidence            3466677777664 23445556555543322              234578889999988754 4556677888889999


Q ss_pred             hcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHH-HHhcCChhHHH
Q 018582          104 EAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQV-LVNLKDLPGAE  182 (353)
Q Consensus       104 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~  182 (353)
                      +.|+++.|..+|+.+....+......|...+..+.+.|+.+.|.++|+.....++. +...|...... +...|+.+.|.
T Consensus       111 ~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~  189 (308)
T d2onda1         111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAF  189 (308)
T ss_dssp             HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHH
T ss_pred             hcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHH
Confidence            99999999999999987655544567899999999999999999999998877653 34444444433 34568999999


Q ss_pred             HHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCCC--hhhHHHHHHHHHccCChHHHHHHHHHHH
Q 018582          183 KCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRG-ADPN--AKTWEIFSDYYLRNGDMKLAVDCLEKAI  259 (353)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~  259 (353)
                      .+|+.+.+..+ .+...|...++.+.+.|+++.|..+|++..... ..|+  ...|...+..-...|+.+.+.++++++.
T Consensus       190 ~i~e~~l~~~p-~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~  268 (308)
T d2onda1         190 KIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF  268 (308)
T ss_dssp             HHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhh-hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999998753 378899999999999999999999999988753 2333  3468888887788899999999999988


Q ss_pred             HcC
Q 018582          260 DTG  262 (353)
Q Consensus       260 ~~~  262 (353)
                      +.-
T Consensus       269 ~~~  271 (308)
T d2onda1         269 TAF  271 (308)
T ss_dssp             HHT
T ss_pred             HHC
Confidence            864

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=3.1e-11  Score=94.54  Aligned_cols=204  Identities=16%  Similarity=0.100  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 018582           93 TTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVL  172 (353)
Q Consensus        93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  172 (353)
                      .++..+..+|.+.|++++|...|++.....+. ++.+|..+..+|.+.|++++|++.|++..+..+. +..++..+..++
T Consensus        38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~  115 (259)
T d1xnfa_          38 QLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIAL  115 (259)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHH
Confidence            35555666777777777777777777665444 5666777777777777777777777777665542 445666666777


Q ss_pred             HhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCC----h
Q 018582          173 VNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGD----M  248 (353)
Q Consensus       173 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~----~  248 (353)
                      ...|++++|...++...+..+. +......+...+.+.+..+.+..+........  ++...++ ++..+.....    .
T Consensus       116 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~  191 (259)
T d1xnfa_         116 YYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD--KEQWGWN-IVEFYLGNISEQTLM  191 (259)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC--CCSTHHH-HHHHHTTSSCHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc--hhhhhhh-HHHHHHHHHHHHHHH
Confidence            7777777777777776665432 34333334444445554444444444444321  1222222 2222222111    1


Q ss_pred             HHHHHHHHHHHHcCCCCCCCCccc-HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhh
Q 018582          249 KLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVF  311 (353)
Q Consensus       249 ~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  311 (353)
                      +.+...+.......        |+ ..++..+...+...|++++|.+.|++....+| .+...|
T Consensus       192 ~~~~~~~~~~~~~~--------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~  246 (259)
T d1xnfa_         192 ERLKADATDNTSLA--------EHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV-HNFVEH  246 (259)
T ss_dssp             HHHHHHCCSHHHHH--------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC-TTCHHH
T ss_pred             HHHHHHHHHhhhcC--------cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHH
Confidence            22222222211111        22 34566677778888888888888888877766 443333

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.41  E-value=5.8e-12  Score=102.79  Aligned_cols=276  Identities=9%  Similarity=-0.015  Sum_probs=203.8

Q ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcc-hHHHHHHH----------HHhcCChhHHHHHHHHHHHcCCCCCcH
Q 018582           24 FNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSY-TYNVWMRA----------LAAVNDISGAERVIEEMKRDGRVAADW   92 (353)
Q Consensus        24 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~----------~~~~~~~~~a~~~~~~~~~~~~~~~~~   92 (353)
                      +..++......+..++|++++++..+.  .|+.. .|+..-..          +...|++++|+.+++...+.  .+.+.
T Consensus        32 ~~~~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~--~pk~~  107 (334)
T d1dcea1          32 TQAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSY  107 (334)
T ss_dssp             HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCH
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHh--CCCcH
Confidence            344444444444568999999999874  46654 34332222          22334578899999999886  56777


Q ss_pred             HHHHHHHHHHHhcCC--HHHHHHHHHHHHHccCCCCHHHHH-HHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHH
Q 018582           93 TTFSNLASIYVEAGL--FEKAERALKELENRNAHRDLSAYQ-FLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMI  169 (353)
Q Consensus        93 ~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  169 (353)
                      ..+..+..++...++  +++|...+.+.....+. +...+. .....+...+.+++|+..++......+ -+...|..+.
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l~  185 (334)
T d1dcea1         108 GTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRS  185 (334)
T ss_dssp             HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHH
T ss_pred             HHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC-CCHHHHHHHH
Confidence            888888777777664  88999999999886554 455554 455777788999999999998887766 3677888999


Q ss_pred             HHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChH
Q 018582          170 QVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMK  249 (353)
Q Consensus       170 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~  249 (353)
                      .++.+.|++++|...+....+..  |+   ...+...+...+..+++...+....... +++...+..+...+...++++
T Consensus       186 ~~~~~~~~~~~A~~~~~~~~~~~--~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~  259 (334)
T d1dcea1         186 CLLPQLHPQPDSGPQGRLPENVL--LK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSEL  259 (334)
T ss_dssp             HHHHHHSCCCCSSSCCSSCHHHH--HH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHhHHhH--HH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHH
Confidence            99999999988876665544321  11   1223344566778888888888887664 345566777778888889999


Q ss_pred             HHHHHHHHHHHcCCCCCCCCcc-cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHH
Q 018582          250 LAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAA  320 (353)
Q Consensus       250 ~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  320 (353)
                      +|.+.+.+....+        | +..++..+..++...|+.++|.+.++++.+.+| .+...|..|...+.-
T Consensus       260 ~a~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP-~~~~y~~~L~~~~~~  322 (334)
T d1dcea1         260 ESCKELQELEPEN--------KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP-MRAAYLDDLRSKFLL  322 (334)
T ss_dssp             HHHHHHHHHCTTC--------HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhC--------chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHhH
Confidence            9999999988776        5 467888899999999999999999999999988 677788877666653

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.40  E-value=9.5e-10  Score=89.84  Aligned_cols=275  Identities=13%  Similarity=0.081  Sum_probs=197.4

Q ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCc------chHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----cHH
Q 018582           24 FNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDS------YTYNVWMRALAAVNDISGAERVIEEMKRDGRVAA----DWT   93 (353)
Q Consensus        24 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~   93 (353)
                      .......+...|++++|++++++..+..  |+.      .++..+..++...|++++|...|++..+.....+    ...
T Consensus        15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~--~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   92 (366)
T d1hz4a_          15 NALRAQVAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW   92 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHH
Confidence            3444566788999999999999998752  332      3566777889999999999999998876321111    234


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHc----cCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCC----Ch
Q 018582           94 TFSNLASIYVEAGLFEKAERALKELENR----NAHR---DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNT----AN  162 (353)
Q Consensus        94 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~  162 (353)
                      .+..+...+...|++..+...+......    ....   ....+..+...+...|+++.+...+..........    ..
T Consensus        93 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  172 (366)
T d1hz4a_          93 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL  172 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHH
Confidence            5567778899999999999998876432    1111   12355667788999999999999999887653322    23


Q ss_pred             hHHHHHHHHHHhcCChhHHHHHHHHHHh----cCCCC--cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC---hh
Q 018582          163 ISYLNMIQVLVNLKDLPGAEKCFKEWES----GCATY--DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPN---AK  233 (353)
Q Consensus       163 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~  233 (353)
                      .++......+...++...+...+.+...    .+..+  ....+..+...+...|++++|...+.+........+   ..
T Consensus       173 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  252 (366)
T d1hz4a_         173 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG  252 (366)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHH
Confidence            3555666778888999999888877553    11111  234456677788899999999999998765433222   33


Q ss_pred             hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCccc-HHHHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 018582          234 TWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPS-SETIRTFMRHFEQEKDVDGAEGFLEILKKA  302 (353)
Q Consensus       234 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  302 (353)
                      .+..+...+...|++++|...++.........  ...|+ ..++..+...|.+.|++++|.+.+++..+.
T Consensus       253 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l  320 (366)
T d1hz4a_         253 QWRNIARAQILLGEFEPAEIVLEELNENARSL--RLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL  320 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhc--ccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            45667888999999999999999887531000  01233 567888889999999999999999987764

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=1.5e-09  Score=88.54  Aligned_cols=265  Identities=15%  Similarity=0.046  Sum_probs=189.1

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCC-CC----HH
Q 018582           59 YNVWMRALAAVNDISGAERVIEEMKRDGRVAAD-----WTTFSNLASIYVEAGLFEKAERALKELENRNAH-RD----LS  128 (353)
Q Consensus        59 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~  128 (353)
                      .......+...|++++|.+++++..+..  +.+     ...+..+..+|...|++++|...+++....... ++    ..
T Consensus        15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~--~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   92 (366)
T d1hz4a_          15 NALRAQVAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW   92 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHH
Confidence            3444566789999999999999998852  222     346677889999999999999999987653221 11    34


Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHHh----CCCCC---hhHHHHHHHHHHhcCChhHHHHHHHHHHhcC----CCCcH
Q 018582          129 AYQFLITLYGQTGNLSEVYRIWRSLRLA----FPNTA---NISYLNMIQVLVNLKDLPGAEKCFKEWESGC----ATYDI  197 (353)
Q Consensus       129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~  197 (353)
                      ++..+...+...|++..+...+......    .....   ...+..+...+...|+++.+...+.......    .....
T Consensus        93 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  172 (366)
T d1hz4a_          93 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL  172 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHH
Confidence            5666778889999999999999876532    11111   1245567788899999999999998877532    22334


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCC----hhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcc
Q 018582          198 RVTNVMIGAYAKEGRLENAEELKERARRR--GADPN----AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP  271 (353)
Q Consensus       198 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  271 (353)
                      ..+..+...+...+...++...+.+....  .....    ...+......+...|+++.|...++.........   ...
T Consensus       173 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~  249 (366)
T d1hz4a_         173 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFAN---NHF  249 (366)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTT---CGG
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcccc---chH
Confidence            55666777788899999999888776532  11111    2345566677889999999999998876653210   112


Q ss_pred             cHHHHHHHHHHHHhcCChhhHHHHHHHHHhc----CCC-CChhhhHHHHHHHHHcCCChHHH
Q 018582          272 SSETIRTFMRHFEQEKDVDGAEGFLEILKKA----VDD-LGVEVFEPLIRTYAAAGRTSPVM  328 (353)
Q Consensus       272 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~~~  328 (353)
                      ....+..+...+...|++++|...++++...    +.. ....++..+...|.+.|++.+++
T Consensus       250 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  311 (366)
T d1hz4a_         250 LQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQ  311 (366)
T ss_dssp             GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHH
Confidence            3456677888999999999999999987642    221 34567888999999999955544

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.31  E-value=1.5e-11  Score=100.30  Aligned_cols=268  Identities=6%  Similarity=-0.133  Sum_probs=193.4

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHH----------HHhcCCHHHHHHHHHHHHHccCCCCHHH
Q 018582           60 NVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASI----------YVEAGLFEKAERALKELENRNAHRDLSA  129 (353)
Q Consensus        60 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~~~~~~a~~~~~~~~~~~~~~~~~~  129 (353)
                      ..++.........++|+++++++.+.  .|-+...|+..-..          +...|++++|+..++......+. +...
T Consensus        33 ~~~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~~~  109 (334)
T d1dcea1          33 QAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGT  109 (334)
T ss_dssp             HHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHH
T ss_pred             HHHHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-cHHH
Confidence            33333333444458999999999986  34455555443322          23345578999999999887655 7778


Q ss_pred             HHHHHHHHHccC--CHHHHHHHHHHHHHhCCCCChhHH-HHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 018582          130 YQFLITLYGQTG--NLSEVYRIWRSLRLAFPNTANISY-LNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGA  206 (353)
Q Consensus       130 ~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  206 (353)
                      |..+..++...+  ++++|+..+..+.+..+. +...+ ......+...+.++.|...++.+.+..+. +...|+.+...
T Consensus       110 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~  187 (334)
T d1dcea1         110 WHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCL  187 (334)
T ss_dssp             HHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHH
T ss_pred             HHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHH
Confidence            887777776665  589999999999887653 44444 45557778889999999999999988755 88899999999


Q ss_pred             HHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhc
Q 018582          207 YAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQE  286 (353)
Q Consensus       207 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  286 (353)
                      +.+.|++++|...+....+.  .|+   .......+...+..+++...+........       ++...+..+...+...
T Consensus       188 ~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~-------~~~~~~~~l~~~~~~~  255 (334)
T d1dcea1         188 LPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRA-------EPLFRCELSVEKSTVL  255 (334)
T ss_dssp             HHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCC-------CCSSSCCCCHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCc-------chhhHHHHHHHHHHHH
Confidence            99999998887666554432  111   12233445566777888888888887752       3445566667777788


Q ss_pred             CChhhHHHHHHHHHhcCCCCChhhhHHHHHHHHHcCCChHHHHHHHHhCCCccCHhHHH
Q 018582          287 KDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYAAAGRTSPVMLRRLKMEKVEVSEASKK  345 (353)
Q Consensus       287 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~m~~~~~~p~~~~~~  345 (353)
                      |+.++|...+.+....+| .+..+|..++.+|.+.|+..+++-..-+...+.|+...+.
T Consensus       256 ~~~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~  313 (334)
T d1dcea1         256 QSELESCKELQELEPENK-WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL  313 (334)
T ss_dssp             HHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             hhHHHHHHHHHHHHhhCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHH
Confidence            999999999999988887 7889999999999999997776644444555677655543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=1.3e-10  Score=90.83  Aligned_cols=216  Identities=15%  Similarity=0.019  Sum_probs=135.2

Q ss_pred             chHHHHHHHHHHCCC-CC--CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 018582           38 EKIPAIIQEMKASSI-MP--DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERA  114 (353)
Q Consensus        38 ~~a~~~~~~m~~~~~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  114 (353)
                      +.++.-+++...... .+  ...+|..+..++.+.|++++|...|++..+.  .+.+..+|..+..+|.+.|++++|+..
T Consensus        16 e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l--~p~~~~a~~~lg~~~~~~g~~~~A~~~   93 (259)
T d1xnfa_          16 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEA   93 (259)
T ss_dssp             HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc--CCCCHHHHhhhchHHHHHHHHHHhhhh
Confidence            445555556554321 11  1235666677888888888888888888886  466777888888888888888888888


Q ss_pred             HHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 018582          115 LKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCAT  194 (353)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  194 (353)
                      |++..+..+. +..++..+...|...|++++|.+.|+...+..+. +......+..++.+.+..+....+..........
T Consensus        94 ~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (259)
T d1xnfa_          94 FDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE  171 (259)
T ss_dssp             HHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCC
T ss_pred             hhHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchh
Confidence            8888776554 5667888888888888888888888888776542 3444444444555555555555555554443222


Q ss_pred             CcHHHHHHHHHHHHhcCC----hHHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582          195 YDIRVTNVMIGAYAKEGR----LENAEELKERARRRGADP-NAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG  262 (353)
Q Consensus       195 ~~~~~~~~li~~~~~~g~----~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  262 (353)
                        ...++ ++..+.....    .+.+...+......  .| ...+|..+...+...|++++|.+.|+..+...
T Consensus       172 --~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  239 (259)
T d1xnfa_         172 --QWGWN-IVEFYLGNISEQTLMERLKADATDNTSL--AEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN  239 (259)
T ss_dssp             --STHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             --hhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhc--CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence              12222 2222222111    12222221111111  11 23456677888889999999999999988876

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.05  E-value=1.2e-08  Score=80.90  Aligned_cols=240  Identities=10%  Similarity=0.091  Sum_probs=150.6

Q ss_pred             chHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018582           38 EKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKE  117 (353)
Q Consensus        38 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  117 (353)
                      .++.+++++..+.+ +|....+..+..  ...+++++|.++|.                .....|...|++++|.+.|.+
T Consensus         2 ~~~~~~l~~aek~~-~~~~~~~~~~~~--~~~~~~~~Aa~~y~----------------~aa~~y~~~~~~~~A~~~y~k   62 (290)
T d1qqea_           2 SDPVELLKRAEKKG-VPSSGFMKLFSG--SDSYKFEEAADLCV----------------QAATIYRLRKELNLAGDSFLK   62 (290)
T ss_dssp             CCHHHHHHHHHHHS-SCCCTHHHHHSC--CSHHHHHHHHHHHH----------------HHHHHHHHTTCTHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhc-CcchhHHHHhcC--CccccHHHHHHHHH----------------HHHHHHHHCcCHHHHHHHHHH
Confidence            35666777666653 344332221110  11223455555544                446678888999999999888


Q ss_pred             HHHcc----C-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC---C--ChhHHHHHHHHHH-hcCChhHHHHHHH
Q 018582          118 LENRN----A-HRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN---T--ANISYLNMIQVLV-NLKDLPGAEKCFK  186 (353)
Q Consensus       118 ~~~~~----~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~~~-~~~~~~~a~~~~~  186 (353)
                      ..+..    - .....+|..+...|.+.|++++|.+.+++.......   +  ...++..+...|. ..|++++|.+.++
T Consensus        63 A~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~  142 (290)
T d1qqea_          63 AADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYE  142 (290)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHH
Confidence            75421    1 112457888889999999999999999876543111   1  1235556666664 4699999999998


Q ss_pred             HHHhc----CCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCh------hhHHHHHHHHHccCChHHHHHHH
Q 018582          187 EWESG----CATY-DIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNA------KTWEIFSDYYLRNGDMKLAVDCL  255 (353)
Q Consensus       187 ~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~------~~~~~li~~~~~~~~~~~a~~~~  255 (353)
                      +..+.    +..+ ...++..+...|...|++++|...|+++.........      ..+...+..+...|+++.|...+
T Consensus       143 ~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~  222 (290)
T d1qqea_         143 LAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTL  222 (290)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            86532    2111 2456788899999999999999999998865322111      12344555677889999999999


Q ss_pred             HHHHHcCCCCCCCCccc---HHHHHHHHHHHHhc--CChhhHHHHHHHHHh
Q 018582          256 EKAIDTGRGDGGKWVPS---SETIRTFMRHFEQE--KDVDGAEGFLEILKK  301 (353)
Q Consensus       256 ~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~  301 (353)
                      ++..+....    + ++   ......++.++...  +.+++|...|+.+.+
T Consensus       223 ~~~~~~~~~----~-~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~  268 (290)
T d1qqea_         223 QEGQSEDPN----F-ADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR  268 (290)
T ss_dssp             HGGGCC--------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred             HHHHHhCCC----c-cchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence            998876521    1 12   23456666666552  346677776665443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.03  E-value=7.8e-09  Score=82.01  Aligned_cols=238  Identities=8%  Similarity=-0.009  Sum_probs=150.7

Q ss_pred             HHHHHHHHHHhcCCCCCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 018582            4 KAEALLEKMKELNLGFSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMK   83 (353)
Q Consensus         4 ~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~   83 (353)
                      ++.++++...+.+- |....+. ++.. ...+++++|.++|.+.               ...|...+++++|.+.|.+..
T Consensus         3 ~~~~~l~~aek~~~-~~~~~~~-~~~~-~~~~~~~~Aa~~y~~a---------------a~~y~~~~~~~~A~~~y~kA~   64 (290)
T d1qqea_           3 DPVELLKRAEKKGV-PSSGFMK-LFSG-SDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAA   64 (290)
T ss_dssp             CHHHHHHHHHHHSS-CCCTHHH-HHSC-CSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhcC-cchhHHH-HhcC-CccccHHHHHHHHHHH---------------HHHHHHCcCHHHHHHHHHHHH
Confidence            56677777665543 3333222 2211 2233467777776654               456888889999999888876


Q ss_pred             Hc----CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCC-----CCHHHHHHHHHHHHc-cCCHHHHHHHHHHH
Q 018582           84 RD----GRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAH-----RDLSAYQFLITLYGQ-TGNLSEVYRIWRSL  153 (353)
Q Consensus        84 ~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~  153 (353)
                      +.    +..+.-..+|..+..+|.+.|++++|.+.+++.......     ....++..+...|.. .|++++|++.+++.
T Consensus        65 ~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A  144 (290)
T d1qqea_          65 DYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELA  144 (290)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHH
Confidence            52    201122457788899999999999999998876442211     114456666666644 69999999999886


Q ss_pred             HHh----CCCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcH------HHHHHHHHHHHhcCChHHHHHHHHH
Q 018582          154 RLA----FPNT-ANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDI------RVTNVMIGAYAKEGRLENAEELKER  222 (353)
Q Consensus       154 ~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~  222 (353)
                      .+.    +..+ ...++..+...+...|++++|...|+++.........      ..+...+..+...|+++.|...+++
T Consensus       145 ~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~  224 (290)
T d1qqea_         145 GEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQE  224 (290)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHG
T ss_pred             HHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            542    1111 1235777889999999999999999998765322111      2334455567788999999999999


Q ss_pred             HHhcCCC-CC---hhhHHHHHHHHHc--cCChHHHHHHHHHHH
Q 018582          223 ARRRGAD-PN---AKTWEIFSDYYLR--NGDMKLAVDCLEKAI  259 (353)
Q Consensus       223 ~~~~~~~-p~---~~~~~~li~~~~~--~~~~~~a~~~~~~~~  259 (353)
                      ..+..+. ++   ......++.++..  .+.+++|+..|+.+.
T Consensus       225 ~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~  267 (290)
T d1qqea_         225 GQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM  267 (290)
T ss_dssp             GGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred             HHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            8765321 11   2234556666654  245777777776543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=5.5e-08  Score=71.71  Aligned_cols=126  Identities=10%  Similarity=-0.005  Sum_probs=81.4

Q ss_pred             HHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCC
Q 018582           28 MTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGL  107 (353)
Q Consensus        28 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  107 (353)
                      ...+...|+++.|++.|+++    .+|+..+|..+..++...|++++|.+.|++.++.  .+.+...|..+..++.+.|+
T Consensus        12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--dp~~~~a~~~~g~~~~~~g~   85 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEK   85 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--hhhhhhhHHHHHHHHHhhcc
Confidence            33456677788887777653    2456667777777777788888888888877776  45667777777777777888


Q ss_pred             HHHHHHHHHHHHHccCCC---------------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCC
Q 018582          108 FEKAERALKELENRNAHR---------------DLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPN  159 (353)
Q Consensus       108 ~~~a~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  159 (353)
                      +++|.+.|++........               ...++..+..++.+.|++++|.+.+.......+.
T Consensus        86 ~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~  152 (192)
T d1hh8a_          86 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE  152 (192)
T ss_dssp             HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            888877777765421110               0233444555566666666666666655544433

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=1.4e-07  Score=69.43  Aligned_cols=86  Identities=21%  Similarity=0.154  Sum_probs=63.6

Q ss_pred             HHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCH
Q 018582           64 RALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNL  143 (353)
Q Consensus        64 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  143 (353)
                      ..+...|+++.|++.|.++     .+|+..++..+..+|...|++++|++.|++..+..+. +..+|..+..+|.+.|++
T Consensus        13 ~~~~~~~d~~~Al~~~~~i-----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~   86 (192)
T d1hh8a_          13 VLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKY   86 (192)
T ss_dssp             HHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHCCCHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccH
Confidence            3456777888888777643     3466677777888888888888888888887776654 677777788888888888


Q ss_pred             HHHHHHHHHHHH
Q 018582          144 SEVYRIWRSLRL  155 (353)
Q Consensus       144 ~~a~~~~~~~~~  155 (353)
                      ++|++.|++...
T Consensus        87 ~~A~~~~~kAl~   98 (192)
T d1hh8a_          87 DLAIKDLKEALI   98 (192)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            888887777654

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=7.1e-08  Score=64.77  Aligned_cols=104  Identities=16%  Similarity=0.035  Sum_probs=67.8

Q ss_pred             HHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHH
Q 018582          204 IGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHF  283 (353)
Q Consensus       204 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  283 (353)
                      ...+.+.|++++|+..|++..+.. +-+...|..+..+|...|++++|++.+...++.+.       .+...|..+..++
T Consensus        10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-------~~~~~~~~~g~~~   81 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-------DWGKGYSRKAAAL   81 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhcc-------chhhHHHHHHHHH
Confidence            455666677777777777766653 22556666677777777777777777777776651       3456667777777


Q ss_pred             HhcCChhhHHHHHHHHHhcCCCCChhhhHHHHH
Q 018582          284 EQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIR  316 (353)
Q Consensus       284 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  316 (353)
                      ...|++++|...+++..+..| .++..+..+..
T Consensus        82 ~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~  113 (117)
T d1elwa_          82 EFLNRFEEAKRTYEEGLKHEA-NNPQLKEGLQN  113 (117)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence            777777777777777777666 55555554443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=2e-07  Score=62.46  Aligned_cols=86  Identities=16%  Similarity=0.160  Sum_probs=32.5

Q ss_pred             HHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHH
Q 018582          102 YVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGA  181 (353)
Q Consensus       102 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  181 (353)
                      +.+.|++++|+..|++..+..+. +...|..+..+|...|++++|+..+.......+ .+...|..+..++...|++++|
T Consensus        13 ~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~g~~~~~~~~~~~A   90 (117)
T d1elwa_          13 ALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALEFLNRFEEA   90 (117)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhcc-chhhHHHHHHHHHHHccCHHHH
Confidence            33334444444444443333222 333333333333344444444444443333322 1333333333333333333333


Q ss_pred             HHHHHHHH
Q 018582          182 EKCFKEWE  189 (353)
Q Consensus       182 ~~~~~~~~  189 (353)
                      ...|++..
T Consensus        91 ~~~~~~a~   98 (117)
T d1elwa_          91 KRTYEEGL   98 (117)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            33333333

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=2.7e-07  Score=65.70  Aligned_cols=92  Identities=13%  Similarity=-0.044  Sum_probs=48.8

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 018582           99 ASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDL  178 (353)
Q Consensus        99 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  178 (353)
                      ...|.+.|++++|+..|++..+..+. +...|..+...|...|++++|+..|++..+..+ -+..+|..+..++...|++
T Consensus        17 gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p-~~~~a~~~~g~~~~~~g~~   94 (159)
T d1a17a_          17 ANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKF   94 (159)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHcc-cchHHHHHHHHHHHHcCCH
Confidence            34445555555555555555554433 455555555555555555555555555555433 2334555555555555555


Q ss_pred             hHHHHHHHHHHhcC
Q 018582          179 PGAEKCFKEWESGC  192 (353)
Q Consensus       179 ~~a~~~~~~~~~~~  192 (353)
                      ++|...+++.....
T Consensus        95 ~eA~~~~~~a~~~~  108 (159)
T d1a17a_          95 RAALRDYETVVKVK  108 (159)
T ss_dssp             HHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHcC
Confidence            55555555555443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.79  E-value=3.5e-08  Score=73.48  Aligned_cols=101  Identities=15%  Similarity=0.049  Sum_probs=81.1

Q ss_pred             CChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHH
Q 018582          160 TANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFS  239 (353)
Q Consensus       160 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li  239 (353)
                      |+...+......+.+.|++++|...|++.....+. +...|..+..+|.+.|++++|...|++..+..+. +..+|..+.
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg   79 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHH
Confidence            56667777788888888888888888888877644 7888888888888888888888888888765322 466788888


Q ss_pred             HHHHccCChHHHHHHHHHHHHcC
Q 018582          240 DYYLRNGDMKLAVDCLEKAIDTG  262 (353)
Q Consensus       240 ~~~~~~~~~~~a~~~~~~~~~~~  262 (353)
                      .+|...|++++|+..|++..+..
T Consensus        80 ~~~~~l~~~~~A~~~~~~al~l~  102 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAYSLA  102 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC
Confidence            88888888888888888887754

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=3.6e-07  Score=65.01  Aligned_cols=94  Identities=10%  Similarity=0.050  Sum_probs=73.8

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccC
Q 018582           62 WMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTG  141 (353)
Q Consensus        62 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  141 (353)
                      ....+.+.|++++|...|++..+.  .+.+...|..+..+|...|++++|...|+...+..+. +..+|..+..++...|
T Consensus        16 ~gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g   92 (159)
T d1a17a_          16 QANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALG   92 (159)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcC
Confidence            345677888888888888888886  4667778888888888888888888888888776554 6678888888888888


Q ss_pred             CHHHHHHHHHHHHHhCC
Q 018582          142 NLSEVYRIWRSLRLAFP  158 (353)
Q Consensus       142 ~~~~a~~~~~~~~~~~~  158 (353)
                      ++++|...+++.....+
T Consensus        93 ~~~eA~~~~~~a~~~~p  109 (159)
T d1a17a_          93 KFRAALRDYETVVKVKP  109 (159)
T ss_dssp             CHHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHHHcCC
Confidence            88888888888877654

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.72  E-value=2e-05  Score=60.80  Aligned_cols=224  Identities=10%  Similarity=-0.031  Sum_probs=159.5

Q ss_pred             CchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCcHHHH
Q 018582           20 SSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAA----VNDISGAERVIEEMKRDGRVAADWTTF   95 (353)
Q Consensus        20 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~   95 (353)
                      |+..+..|...+.+.+++++|++.|++..+.|   +...+..|...+..    ..+...|...+......+  .|  ...
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~--~a~   73 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YS--NGC   73 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CH--HHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--cc--chh
Confidence            45567778888888999999999999998876   55666667777766    568889999999888764  22  333


Q ss_pred             HHHHHHHHh----cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHH----ccCCHHHHHHHHHHHHHhCCCCChhHHHH
Q 018582           96 SNLASIYVE----AGLFEKAERALKELENRNAHRDLSAYQFLITLYG----QTGNLSEVYRIWRSLRLAFPNTANISYLN  167 (353)
Q Consensus        96 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  167 (353)
                      ..+...+..    ..+.+.|...++.....|..   .....+...+.    .......+...+......   .+...+..
T Consensus        74 ~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~  147 (265)
T d1ouva_          74 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTI  147 (265)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHH
T ss_pred             hccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhh
Confidence            344444443    56788899999988776543   23333333333    244566777777765543   35566777


Q ss_pred             HHHHHHh----cCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCChhhHHHHH
Q 018582          168 MIQVLVN----LKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAK----EGRLENAEELKERARRRGADPNAKTWEIFS  239 (353)
Q Consensus       168 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~li  239 (353)
                      +...+..    ..+...+...++...+.+   +......+...|..    ..++++|...|....+.|   ++..+..|.
T Consensus       148 L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG  221 (265)
T d1ouva_         148 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG  221 (265)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             hhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHH
Confidence            7777775    345667777888777765   55666667666665    568999999999998876   556677777


Q ss_pred             HHHHc----cCChHHHHHHHHHHHHcC
Q 018582          240 DYYLR----NGDMKLAVDCLEKAIDTG  262 (353)
Q Consensus       240 ~~~~~----~~~~~~a~~~~~~~~~~~  262 (353)
                      ..|.+    ..+.++|.++|++..+.|
T Consensus       222 ~~y~~G~g~~~n~~~A~~~~~kAa~~g  248 (265)
T d1ouva_         222 AMQYNGEGVTRNEKQAIENFKKGCKLG  248 (265)
T ss_dssp             HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             HHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence            77765    448999999999999988

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.70  E-value=1.8e-07  Score=69.46  Aligned_cols=97  Identities=11%  Similarity=-0.034  Sum_probs=48.3

Q ss_pred             CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHH
Q 018582           55 DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLI  134 (353)
Q Consensus        55 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  134 (353)
                      +...+......+.+.|++++|+..|++.++.  .|.+...|..+..+|.+.|++++|+..|+...+..+. +..+|..+.
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg   79 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG   79 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHH
Confidence            3334444444555555555555555555544  3444445555555555555555555555555443322 344455555


Q ss_pred             HHHHccCCHHHHHHHHHHHH
Q 018582          135 TLYGQTGNLSEVYRIWRSLR  154 (353)
Q Consensus       135 ~~~~~~~~~~~a~~~~~~~~  154 (353)
                      .+|...|++++|+..|++..
T Consensus        80 ~~~~~l~~~~~A~~~~~~al   99 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAY   99 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHH
Confidence            55555555555555555443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.64  E-value=3.3e-07  Score=60.78  Aligned_cols=87  Identities=13%  Similarity=0.045  Sum_probs=46.5

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCC
Q 018582           63 MRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGN  142 (353)
Q Consensus        63 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  142 (353)
                      ...+.+.|++++|...|++..+.  .+-+...|..+..++.+.|++++|+..|++..+..+. +..+|..+...|...|+
T Consensus        23 g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g~   99 (112)
T d1hxia_          23 GLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHN   99 (112)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCCC
Confidence            34445555555555555555554  2334555555555555555555555555555554333 44555555555555555


Q ss_pred             HHHHHHHHHH
Q 018582          143 LSEVYRIWRS  152 (353)
Q Consensus       143 ~~~a~~~~~~  152 (353)
                      +++|++.+++
T Consensus       100 ~~~A~~~l~~  109 (112)
T d1hxia_         100 ANAALASLRA  109 (112)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555555554

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=2.1e-06  Score=61.59  Aligned_cols=82  Identities=10%  Similarity=0.004  Sum_probs=70.9

Q ss_pred             hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcc-cHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhh
Q 018582          233 KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVP-SSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVF  311 (353)
Q Consensus       233 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  311 (353)
                      .+|+.+..+|.+.|++++|+..++..++..        | +...+..+..++...|++++|...|+++.+.+| .+..+.
T Consensus        63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~--------p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P-~n~~~~  133 (170)
T d1p5qa1          63 ASHLNLAMCHLKLQAFSAAIESCNKALELD--------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAK  133 (170)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHH
T ss_pred             HHHHHHHHHHHhhhhcccccchhhhhhhcc--------ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCC-CCHHHH
Confidence            456778888999999999999999999987        5 688999999999999999999999999999998 788888


Q ss_pred             HHHHHHHHHcCC
Q 018582          312 EPLIRTYAAAGR  323 (353)
Q Consensus       312 ~~l~~~~~~~g~  323 (353)
                      ..+....-+.+.
T Consensus       134 ~~l~~~~~~~~~  145 (170)
T d1p5qa1         134 TQLAVCQQRIRR  145 (170)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            777776655444

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=4.5e-07  Score=60.98  Aligned_cols=95  Identities=14%  Similarity=0.094  Sum_probs=55.7

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCCCC-hhhHHHHHHHH
Q 018582          167 NMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGR---LENAEELKERARRRGADPN-AKTWEIFSDYY  242 (353)
Q Consensus       167 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~  242 (353)
                      .+++.+...+++++|.+.|++..+.++. +..++..+..++.+.++   +++|+.+|+++...+..|+ ..++..+..+|
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            3455555666666666666666665533 55666666666655433   3356666666665433332 22455566666


Q ss_pred             HccCChHHHHHHHHHHHHcC
Q 018582          243 LRNGDMKLAVDCLEKAIDTG  262 (353)
Q Consensus       243 ~~~~~~~~a~~~~~~~~~~~  262 (353)
                      .+.|++++|++.|+++++..
T Consensus        83 ~~~g~~~~A~~~~~~aL~~~  102 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQTE  102 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHhhhHHHHHHHHHHHHhC
Confidence            66677777777776666655

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=1.1e-06  Score=58.96  Aligned_cols=106  Identities=12%  Similarity=0.078  Sum_probs=84.9

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccC---ChHHHHHHHHHHHHcCCCCCCCCccc-HHHH
Q 018582          201 NVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNG---DMKLAVDCLEKAIDTGRGDGGKWVPS-SETI  276 (353)
Q Consensus       201 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~  276 (353)
                      ..+++.+...+++++|.+.|++....+ +.+..++..+..++.+.+   ++++|+.+++++...+.      .|+ ..++
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~------~~~~~~~~   75 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS------KEEQRDYV   75 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC------HHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccC------CchHHHHH
Confidence            457788888999999999999999875 347788888999988755   45579999999988761      133 3478


Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHH
Q 018582          277 RTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPL  314 (353)
Q Consensus       277 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  314 (353)
                      ..+..+|.+.|++++|.+.|+++.+.+| .+......+
T Consensus        76 ~~Lg~~y~~~g~~~~A~~~~~~aL~~~P-~~~~A~~l~  112 (122)
T d1nzna_          76 FYLAVGNYRLKEYEKALKYVRGLLQTEP-QNNQAKELE  112 (122)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhCc-CCHHHHHHH
Confidence            8899999999999999999999999988 666555443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.54  E-value=8e-07  Score=58.88  Aligned_cols=87  Identities=9%  Similarity=0.011  Sum_probs=42.8

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 018582           99 ASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDL  178 (353)
Q Consensus        99 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  178 (353)
                      ...+.+.|++++|...|++.....+. +..+|..+..++.+.|++++|+..|++..+..+. +..++..+..+|...|++
T Consensus        23 g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g~~  100 (112)
T d1hxia_          23 GLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNA  100 (112)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCCCH
Confidence            34444555555555555555444332 4445555555555555555555555555444331 334444445555555555


Q ss_pred             hHHHHHHHH
Q 018582          179 PGAEKCFKE  187 (353)
Q Consensus       179 ~~a~~~~~~  187 (353)
                      ++|.+.+++
T Consensus       101 ~~A~~~l~~  109 (112)
T d1hxia_         101 NAALASLRA  109 (112)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555554444

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=1.4e-07  Score=80.55  Aligned_cols=228  Identities=8%  Similarity=0.004  Sum_probs=119.6

Q ss_pred             hHHHHHHHHHHCCCCCC-cchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHH-HHHHHHHHHHhcCCHHHHHHHHH
Q 018582           39 KIPAIIQEMKASSIMPD-SYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWT-TFSNLASIYVEAGLFEKAERALK  116 (353)
Q Consensus        39 ~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~  116 (353)
                      +|.+.|++..+  ++|+ ...+..+..++...+++++|   |++++..   .|+.. .++.. ..+.+ ..+..+.+.++
T Consensus         4 eA~q~~~qA~~--l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~---dp~~a~~~~~e-~~Lw~-~~y~~~ie~~r   73 (497)
T d1ya0a1           4 QSAQYLRQAEV--LKADMTDSKLGPAEVWTSRQALQDL---YQKMLVT---DLEYALDKKVE-QDLWN-HAFKNQITTLQ   73 (497)
T ss_dssp             HHHHHHHHHHH--HHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH---CHHHHHHHTHH-HHHHH-HHTHHHHHHHH
T ss_pred             HHHHHHHHHHH--cCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc---ChhhHHHHhHH-HHHHH-HHHHHHHHHHH
Confidence            57788888776  3455 44666677777777777765   6777653   24321 22211 11111 12445666666


Q ss_pred             HHHHccCCCCHHHHHHHHHH--HHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 018582          117 ELENRNAHRDLSAYQFLITL--YGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCAT  194 (353)
Q Consensus       117 ~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  194 (353)
                      ...+....++..-.......  ....+.++.++..+....+..+ ++...+..+...+.+.|+.+.|...+.......  
T Consensus        74 ~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--  150 (497)
T d1ya0a1          74 GQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDL-PCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--  150 (497)
T ss_dssp             HHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH--
T ss_pred             HhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCh-hhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--
Confidence            66544333332222222111  2223444455444443332222 344566677777888888888887777665432  


Q ss_pred             CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHH
Q 018582          195 YDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSE  274 (353)
Q Consensus       195 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  274 (353)
                       ...++..+...+...|++++|...|.+..+..+ -+...|+.+...+...|+..+|+..|.+.+...       .|-..
T Consensus       151 -~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P-~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-------~~~~~  221 (497)
T d1ya0a1         151 -CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVP-SNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-------FPFPA  221 (497)
T ss_dssp             -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-------BCCHH
T ss_pred             -HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-------CCCHH
Confidence             135667778888888888888888888887632 255788888888888888888888888888765       26677


Q ss_pred             HHHHHHHHHHhcCC
Q 018582          275 TIRTFMRHFEQEKD  288 (353)
Q Consensus       275 ~~~~l~~~~~~~~~  288 (353)
                      ++..|...+.+..+
T Consensus       222 a~~nL~~~~~~~~~  235 (497)
T d1ya0a1         222 ASTNLQKALSKALE  235 (497)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhhh
Confidence            78888777765543

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=1.2e-05  Score=57.50  Aligned_cols=62  Identities=8%  Similarity=-0.144  Sum_probs=30.8

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 018582          130 YQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGC  192 (353)
Q Consensus       130 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  192 (353)
                      |+.+..+|.+.|++++|+..++......+ .+..++..+..++...|++++|...|++..+..
T Consensus        65 ~~nla~~y~k~~~~~~A~~~~~~al~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  126 (170)
T d1p5qa1          65 HLNLAMCHLKLQAFSAAIESCNKALELDS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY  126 (170)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhhhhcccccchhhhhhhccc-cchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence            34444455555555555555555544433 234444555555555555555555555554443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.44  E-value=0.00016  Score=55.59  Aligned_cols=225  Identities=13%  Similarity=0.017  Sum_probs=155.3

Q ss_pred             CcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHccCCCCHHHH
Q 018582           55 DSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVE----AGLFEKAERALKELENRNAHRDLSAY  130 (353)
Q Consensus        55 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~  130 (353)
                      |+..+..+...+.+.+++++|.+.|++..+.|    +...+..|...|..    ..+...|...+......+   +....
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g----~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~   73 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC   73 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchh
Confidence            34566667777888999999999999998865    34455567777776    568889999988877654   34445


Q ss_pred             HHHHHHHHc----cCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCcHHHHHH
Q 018582          131 QFLITLYGQ----TGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVN----LKDLPGAEKCFKEWESGCATYDIRVTNV  202 (353)
Q Consensus       131 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~  202 (353)
                      ..+...+..    ..+.+.|...++.....|..   .....+...+..    ......+...+......+   +...+..
T Consensus        74 ~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~  147 (265)
T d1ouva_          74 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI  147 (265)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred             hccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhh
Confidence            555444433    56788899999888776642   223333333332    334555666666655543   5667777


Q ss_pred             HHHHHHh----cCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCCCCcccHH
Q 018582          203 MIGAYAK----EGRLENAEELKERARRRGADPNAKTWEIFSDYYLR----NGDMKLAVDCLEKAIDTGRGDGGKWVPSSE  274 (353)
Q Consensus       203 li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  274 (353)
                      +...|..    ..+...+...++...+.|   +......+...|..    ..++++|+.+|.+..+.|         ++.
T Consensus       148 L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---------~~~  215 (265)
T d1ouva_         148 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---------NGG  215 (265)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---------CHH
T ss_pred             hhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---------CHH
Confidence            8777776    346677788888777764   55666666655654    568999999999998886         344


Q ss_pred             HHHHHHHHHHh----cCChhhHHHHHHHHHhcCC
Q 018582          275 TIRTFMRHFEQ----EKDVDGAEGFLEILKKAVD  304 (353)
Q Consensus       275 ~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~  304 (353)
                      .+..|...|.+    .++.+.|.++|++..+.|.
T Consensus       216 a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~  249 (265)
T d1ouva_         216 GCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA  249 (265)
T ss_dssp             HHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence            55667676765    4478999999999988876

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=3.5e-06  Score=57.17  Aligned_cols=96  Identities=19%  Similarity=0.240  Sum_probs=60.1

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-CC-----hhhHHHHH
Q 018582          166 LNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGAD-PN-----AKTWEIFS  239 (353)
Q Consensus       166 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p~-----~~~~~~li  239 (353)
                      ..+...+.+.|++++|...|.+.++.++. +..++..+..+|.+.|++++|...++++.+.... +.     ..+|..+.
T Consensus         8 k~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg   86 (128)
T d1elra_           8 KELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG   86 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence            34555666667777777777666666533 5666666777777777777777777766542111 01     13455566


Q ss_pred             HHHHccCChHHHHHHHHHHHHcC
Q 018582          240 DYYLRNGDMKLAVDCLEKAIDTG  262 (353)
Q Consensus       240 ~~~~~~~~~~~a~~~~~~~~~~~  262 (353)
                      ..+...+++++|++.|.+.+...
T Consensus        87 ~~~~~~~~~~~A~~~~~kal~~~  109 (128)
T d1elra_          87 NSYFKEEKYKDAIHFYNKSLAEH  109 (128)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHhCCHHHHHHHHHHHHhcC
Confidence            66677777777777777776654

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.39  E-value=1.6e-05  Score=55.72  Aligned_cols=78  Identities=10%  Similarity=-0.012  Sum_probs=66.8

Q ss_pred             hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhH
Q 018582          233 KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFE  312 (353)
Q Consensus       233 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  312 (353)
                      .+|..+..+|.+.|++++|++.++..++.+.       .+..+|..+..++...|++++|...|++..+.+| .|..+..
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p-------~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P-~n~~~~~  139 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDK-------NNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRN  139 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHH
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhccccccc-------hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHH
Confidence            4677788899999999999999999999861       3688999999999999999999999999999998 6777776


Q ss_pred             HHHHHH
Q 018582          313 PLIRTY  318 (353)
Q Consensus       313 ~l~~~~  318 (353)
                      .+..+.
T Consensus       140 ~l~~~~  145 (153)
T d2fbna1         140 SYELCV  145 (153)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            665443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=9.6e-06  Score=54.93  Aligned_cols=92  Identities=14%  Similarity=0.151  Sum_probs=46.8

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCC-C-----HHHHHHHHH
Q 018582           62 WMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHR-D-----LSAYQFLIT  135 (353)
Q Consensus        62 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~-----~~~~~~l~~  135 (353)
                      +...+.+.|++++|+..|.+.++.  .+.+..++..+..+|.+.|++++|+..++++.+..+.. .     ..+|..+..
T Consensus        10 ~G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~   87 (128)
T d1elra_          10 LGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN   87 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence            344555555555555555555554  34445555555555555555555555555544322110 0     123444444


Q ss_pred             HHHccCCHHHHHHHHHHHHH
Q 018582          136 LYGQTGNLSEVYRIWRSLRL  155 (353)
Q Consensus       136 ~~~~~~~~~~a~~~~~~~~~  155 (353)
                      .+...+++++|++.|+....
T Consensus        88 ~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          88 SYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHh
Confidence            55555555555555555444

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.30  E-value=0.00042  Score=54.71  Aligned_cols=238  Identities=11%  Similarity=0.069  Sum_probs=125.4

Q ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHH
Q 018582           24 FNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYV  103 (353)
Q Consensus        24 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  103 (353)
                      |..++..+.+.++++.|.+++.+.      -+..+|..+...|.+......+.     +...+ ...+......++..|-
T Consensus        43 ~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~e~~la~-----i~~~~-~~~~~d~l~~~v~~ye  110 (336)
T d1b89a_          43 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQ-----MCGLH-IVVHADELEELINYYQ  110 (336)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHH-----HTTTT-TTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCcHHHHHH-----HHHHH-hhcCHHHHHHHHHHHH
Confidence            444555555555555555554322      14446666666666555443321     12222 3345555567888888


Q ss_pred             hcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChh----------HHHHHHHHHH
Q 018582          104 EAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANI----------SYLNMIQVLV  173 (353)
Q Consensus       104 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------~~~~l~~~~~  173 (353)
                      ..|.+++...+++..... -..+...++.++..|++.+ .++..+.+...   ...-|..          .|..++-.|.
T Consensus       111 ~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~---s~~y~~~k~~~~c~~~~l~~elv~Ly~  185 (336)
T d1b89a_         111 DRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQKMREHLELF---WSRVNIPKVLRAAEQAHLWAELVFLYD  185 (336)
T ss_dssp             HTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-HHHHHHHHHHH---STTSCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-hHHHHHHHHhc---cccCCHHHHHHHHHHcCChHHHHHHHH
Confidence            888888888888877543 2346777888888888764 44444444332   1111111          1233334444


Q ss_pred             hcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHH-----------
Q 018582          174 NLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYY-----------  242 (353)
Q Consensus       174 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~-----------  242 (353)
                      +.|+++.|..+.-   ..  .++..-....+..+.+..+.+...++.....+.  .|  ...+.++...           
T Consensus       186 ~~~~~~~A~~~~i---~~--~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p--~~i~~lL~~v~~~~d~~r~V~  256 (336)
T d1b89a_         186 KYEEYDNAIITMM---NH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KP--LLLNDLLMVLSPRLDHTRAVN  256 (336)
T ss_dssp             HTTCHHHHHHHHH---HS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CG--GGHHHHHHHHGGGCCHHHHHH
T ss_pred             hcCCHHHHHHHHH---Hc--chhhhhHHHHHHHHHccCChHHHHHHHHHHHHc--CH--HHHHHHHHHhccCCCHHHHHH
Confidence            4444444433321   11  223333344556666777776666666655543  23  2334444444           


Q ss_pred             --HccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHH
Q 018582          243 --LRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFL  296 (353)
Q Consensus       243 --~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  296 (353)
                        .+.++......+++.....+         +..+.+++...|...++++.-++..
T Consensus       257 ~~~k~~~l~li~p~Le~v~~~n---------~~~vn~al~~lyie~~d~~~l~~~i  303 (336)
T d1b89a_         257 YFSKVKQLPLVKPYLRSVQNHN---------NKSVNESLNNLFITEEDYQALRTSI  303 (336)
T ss_dssp             HHHHTTCTTTTHHHHHHHHTTC---------CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHhcCCcHHHHHHHHHHHHcC---------hHHHHHHHHHHHhCcchhHHHHHHH
Confidence              44444444445554443332         3456777777787777765544444

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.28  E-value=0.00049  Score=54.33  Aligned_cols=265  Identities=11%  Similarity=0.072  Sum_probs=161.4

Q ss_pred             CCchhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHH
Q 018582           19 FSSMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNL   98 (353)
Q Consensus        19 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l   98 (353)
                      |+..--..+...|.+.|.++.|..+|..+.         -|..++..+.+.+++..|.+++.+.       -+..+|..+
T Consensus        12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~-------~~~~~~k~~   75 (336)
T d1b89a_          12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEV   75 (336)
T ss_dssp             C----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc-------CCHHHHHHH
Confidence            555556677888889999999999997553         3677888899999999988877533       245577788


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 018582           99 ASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDL  178 (353)
Q Consensus        99 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  178 (353)
                      ...+.+..+..-|.-     .......++.....++..|...|.+++...+++..... ...+...++.++..|++.+ .
T Consensus        76 ~~~l~~~~e~~la~i-----~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~  148 (336)
T d1b89a_          76 CFACVDGKEFRLAQM-----CGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-P  148 (336)
T ss_dssp             HHHHHHTTCHHHHHH-----TTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-H
T ss_pred             HHHHHhCcHHHHHHH-----HHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-h
Confidence            888888877655422     22223346666778999999999999999999987543 2456667888999888864 3


Q ss_pred             hHHHHHHHHHHhcCCCCc--------HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHH
Q 018582          179 PGAEKCFKEWESGCATYD--------IRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKL  250 (353)
Q Consensus       179 ~~a~~~~~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~  250 (353)
                      ++..+.+..... ...+.        ...|..++-.|.+.|.+++|..++-.   +  .++..-...++..+.+..+.+.
T Consensus       149 ~kl~e~l~~~s~-~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~---~--~~~~~~~~~f~e~~~k~~N~e~  222 (336)
T d1b89a_         149 QKMREHLELFWS-RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN---H--PTDAWKEGQFKDIITKVANVEL  222 (336)
T ss_dssp             HHHHHHHHHHST-TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH---S--TTTTCCHHHHHHHHHHCSSTHH
T ss_pred             HHHHHHHHhccc-cCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHH---c--chhhhhHHHHHHHHHccCChHH
Confidence            333333333211 11111        11234455555555555555443322   1  3344445556667777777777


Q ss_pred             HHHHHHHHHHcCCCCCCCCcccHH-----------HHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHHHH
Q 018582          251 AVDCLEKAIDTGRGDGGKWVPSSE-----------TIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRTYA  319 (353)
Q Consensus       251 a~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  319 (353)
                      ..++....++..        |+..           -...++..+.+.++......+++...+.+.   ..+.++|...|.
T Consensus       223 ~~~~i~~yL~~~--------p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n~---~~vn~al~~lyi  291 (336)
T d1b89a_         223 YYRAIQFYLEFK--------PLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNN---KSVNESLNNLFI  291 (336)
T ss_dssp             HHHHHHHHHHHC--------GGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTCC---HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcC--------HHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcCh---HHHHHHHHHHHh
Confidence            666666665543        3211           123455666777888888888877766553   578999999999


Q ss_pred             HcCC
Q 018582          320 AAGR  323 (353)
Q Consensus       320 ~~g~  323 (353)
                      ..++
T Consensus       292 e~~d  295 (336)
T d1b89a_         292 TEED  295 (336)
T ss_dssp             HTTC
T ss_pred             Ccch
Confidence            9887

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.27  E-value=3.2e-05  Score=54.05  Aligned_cols=62  Identities=21%  Similarity=0.056  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 018582          164 SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRR  226 (353)
Q Consensus       164 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  226 (353)
                      +|..+..+|.+.|++++|.+.++...+..+. +..+|..+..++...|++++|...|++..+.
T Consensus        69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l  130 (153)
T d2fbna1          69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASL  130 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHhcccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3444444555555555555555554444322 4445555555555555555555555555443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=8.4e-07  Score=75.61  Aligned_cols=227  Identities=8%  Similarity=-0.020  Sum_probs=131.5

Q ss_pred             HHHHHHHHHHHhcCCCCC-chhHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCcc-hHHHHHHHHHhcCChhHHHHHHH
Q 018582            3 EKAEALLEKMKELNLGFS-SMPFNSLMTLYAKTGHPEKIPAIIQEMKASSIMPDSY-TYNVWMRALAAVNDISGAERVIE   80 (353)
Q Consensus         3 ~~A~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~   80 (353)
                      =+|.+.|++..+..  |+ +.++..+...+...+++++|   |+++...  .|+.. .++.. ..+. ...+..+.+.++
T Consensus         3 ~eA~q~~~qA~~l~--p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~e-~~Lw-~~~y~~~ie~~r   73 (497)
T d1ya0a1           3 LQSAQYLRQAEVLK--ADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKVE-QDLW-NHAFKNQITTLQ   73 (497)
T ss_dssp             HHHHHHHHHHHHHH--GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTHH-HHHH-HHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHHcC--CCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhHH-HHHH-HHHHHHHHHHHH
Confidence            47888888887644  44 56777788888888888766   6776653  23211 11111 1111 122456677777


Q ss_pred             HHHHcCCCCCcHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCC
Q 018582           81 EMKRDGRVAADWTTFSNLA--SIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAFP  158 (353)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  158 (353)
                      ...+.. ..++..-.....  ......+.++.|+..+.......+ ++...+..+...+.+.|+.++|...+.......+
T Consensus        74 ~~~k~~-~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~  151 (497)
T d1ya0a1          74 GQAKNR-ANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDL-PCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC  151 (497)
T ss_dssp             HHHSCS-SCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHHH
T ss_pred             Hhcccc-cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCh-hhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH
Confidence            766543 333332222221  222334556666665555443322 3566788888889999999999988877654321


Q ss_pred             CCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHH
Q 018582          159 NTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIF  238 (353)
Q Consensus       159 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l  238 (353)
                         ..++..+...+...|++++|...|++..+..+. +...|+.|...+...|+..+|...|.+..... .|...++..|
T Consensus       152 ---~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL  226 (497)
T d1ya0a1         152 ---QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNL  226 (497)
T ss_dssp             ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHH
Confidence               356778899999999999999999999988755 88999999999999999999999999998764 5677888888


Q ss_pred             HHHHHcc
Q 018582          239 SDYYLRN  245 (353)
Q Consensus       239 i~~~~~~  245 (353)
                      ...+.+.
T Consensus       227 ~~~~~~~  233 (497)
T d1ya0a1         227 QKALSKA  233 (497)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            7776543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.23  E-value=8.6e-05  Score=52.73  Aligned_cols=60  Identities=15%  Similarity=0.097  Sum_probs=28.7

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 018582          165 YLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARR  225 (353)
Q Consensus       165 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~  225 (353)
                      |..+..+|.+.|++++|...++...+..+. +...|..+..+|...|++++|...|.++.+
T Consensus        67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~  126 (168)
T d1kt1a1          67 FLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLE  126 (168)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            333444444455555555555554444322 444444445555555555555555555444

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.22  E-value=3.5e-05  Score=54.84  Aligned_cols=83  Identities=13%  Similarity=0.116  Sum_probs=70.2

Q ss_pred             hhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhH
Q 018582          233 KTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFE  312 (353)
Q Consensus       233 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  312 (353)
                      ..|..+..+|.+.|++++|+..++..++..       +.+...|..+..++...|++++|...|+++.+.+| .+..++.
T Consensus        65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-------p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P-~n~~~~~  136 (168)
T d1kt1a1          65 AAFLNLAMCYLKLREYTKAVECCDKALGLD-------SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARL  136 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHH
T ss_pred             HHHHhHHHHHHHhhhcccchhhhhhhhhcc-------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHH
Confidence            356667888999999999999999999986       14688999999999999999999999999999998 7888877


Q ss_pred             HHHHHHHHcCC
Q 018582          313 PLIRTYAAAGR  323 (353)
Q Consensus       313 ~l~~~~~~~g~  323 (353)
                      .+.....+.+.
T Consensus       137 ~l~~~~~~~~~  147 (168)
T d1kt1a1         137 QIFMCQKKAKE  147 (168)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            77766655443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.22  E-value=1.8e-05  Score=56.48  Aligned_cols=81  Identities=14%  Similarity=0.086  Sum_probs=63.2

Q ss_pred             hhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhh
Q 018582          232 AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVF  311 (353)
Q Consensus       232 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  311 (353)
                      ...|..+..++.+.|++++|+..+.+.++..       +.+...|..+..++.+.|++++|...|+++.+..| .+..++
T Consensus        77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-------p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p-~n~~~~  148 (169)
T d1ihga1          77 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-------PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQ  148 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhhhhhh-------hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHH
Confidence            3456667778888889999999988888875       13577888888888889999999999998888887 677777


Q ss_pred             HHHHHHHHH
Q 018582          312 EPLIRTYAA  320 (353)
Q Consensus       312 ~~l~~~~~~  320 (353)
                      ..+..+..+
T Consensus       149 ~~l~~~~~~  157 (169)
T d1ihga1         149 AELLKVKQK  157 (169)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            766655443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.19  E-value=3.1e-05  Score=55.23  Aligned_cols=62  Identities=13%  Similarity=0.039  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 018582          164 SYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRR  226 (353)
Q Consensus       164 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~  226 (353)
                      .|..+..++.+.|++++|...++++++..+. +...|..+..+|...|++++|...|++..+.
T Consensus        79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l  140 (169)
T d1ihga1          79 CVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEI  140 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence            3444445555555555555555555544422 4455555555555555555555555555543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.17  E-value=5.4e-05  Score=54.33  Aligned_cols=71  Identities=14%  Similarity=0.096  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-----hCCCCChhH
Q 018582           93 TTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRL-----AFPNTANIS  164 (353)
Q Consensus        93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~  164 (353)
                      ..+..+...+.+.|++++|+..++.+....+. +...|..++.+|...|+..+|++.|+++..     .|+.|+..+
T Consensus        68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          68 LAHTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHHHHHCCCchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            45566777777888888888888887776554 777788888888888888888887777633     467666543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.07  E-value=6.5e-05  Score=53.90  Aligned_cols=102  Identities=12%  Similarity=0.032  Sum_probs=83.1

Q ss_pred             HHHHHHHhcCCcchHHHHHHHHHHC--CCC-CCc------------------chHHHHHHHHHhcCChhHHHHHHHHHHH
Q 018582           26 SLMTLYAKTGHPEKIPAIIQEMKAS--SIM-PDS------------------YTYNVWMRALAAVNDISGAERVIEEMKR   84 (353)
Q Consensus        26 ~ll~~~~~~~~~~~a~~~~~~m~~~--~~~-p~~------------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~   84 (353)
                      .........|++++|.+.|.+....  |-. ++.                  ..+..+..++...|++++|...++++.+
T Consensus        16 ~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~   95 (179)
T d2ff4a2          16 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTF   95 (179)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence            3345678899999999999998874  211 111                  2456778889999999999999999999


Q ss_pred             cCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HccCCCCHHH
Q 018582           85 DGRVAADWTTFSNLASIYVEAGLFEKAERALKELE-----NRNAHRDLSA  129 (353)
Q Consensus        85 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~  129 (353)
                      .  .+-+...|..++.+|.+.|+.++|++.|+++.     +.|+.|+..+
T Consensus        96 ~--~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          96 E--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             H--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             h--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            7  68899999999999999999999999999873     3688888654

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.01  E-value=8.3e-06  Score=62.68  Aligned_cols=52  Identities=17%  Similarity=0.105  Sum_probs=27.5

Q ss_pred             hcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHh
Q 018582          104 EAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLA  156 (353)
Q Consensus       104 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  156 (353)
                      +.|++++|+..+++..+..+. +...+..+...++..|++++|.+.|+...+.
T Consensus         8 ~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l   59 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL   59 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            345555555555555554433 4555555555555555555555555555444

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.99  E-value=6.4e-06  Score=63.32  Aligned_cols=55  Identities=16%  Similarity=0.149  Sum_probs=39.1

Q ss_pred             HhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccC
Q 018582           67 AAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNA  123 (353)
Q Consensus        67 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  123 (353)
                      .+.|++++|+..+++.++.  .|.|...+..+...++..|++++|...++...+..+
T Consensus         7 L~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P   61 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP   61 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG
T ss_pred             HHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            4567777777777777775  466667777777777777777777777777766543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.97  E-value=4.9e-05  Score=52.50  Aligned_cols=70  Identities=10%  Similarity=0.050  Sum_probs=40.3

Q ss_pred             hcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 018582           68 AVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEA----------GLFEKAERALKELENRNAHRDLSAYQFLITLY  137 (353)
Q Consensus        68 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  137 (353)
                      +.+.+++|...|+...+.  .|.+..++..+..++...          +.+++|+..|++..+..+. +..+|..+..+|
T Consensus         9 r~~~fe~A~~~~e~al~~--~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~~~lG~~y   85 (145)
T d1zu2a1           9 RILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY   85 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHccHHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhHHHhhHHHHH
Confidence            444566777777777665  455666666666666543          3345566666666555443 455565555555


Q ss_pred             Hcc
Q 018582          138 GQT  140 (353)
Q Consensus       138 ~~~  140 (353)
                      ...
T Consensus        86 ~~~   88 (145)
T d1zu2a1          86 TSF   88 (145)
T ss_dssp             HHH
T ss_pred             HHc
Confidence            443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.92  E-value=5.4e-05  Score=52.29  Aligned_cols=76  Identities=14%  Similarity=0.093  Sum_probs=42.3

Q ss_pred             hHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccC-----------ChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHH
Q 018582          213 LENAEELKERARRRGADPNAKTWEIFSDYYLRNG-----------DMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMR  281 (353)
Q Consensus       213 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  281 (353)
                      +++|+..|++..+..+. +..+|..+..+|...|           .+++|.+.|++.++..        |+...+..-+.
T Consensus        57 ~~~Ai~~~~kAl~l~P~-~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~--------P~~~~~~~~L~  127 (145)
T d1zu2a1          57 IQEAITKFEEALLIDPK-KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ--------PDNTHYLKSLE  127 (145)
T ss_dssp             HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--------TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcch-hhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccC--------CCHHHHHHHHH
Confidence            34555555555554321 3445555555544332           3677888888888876        76665555444


Q ss_pred             HHHhcCChhhHHHHHHHHHhcC
Q 018582          282 HFEQEKDVDGAEGFLEILKKAV  303 (353)
Q Consensus       282 ~~~~~~~~~~a~~~~~~~~~~~  303 (353)
                      .+      ..|.+++.++.+.+
T Consensus       128 ~~------~ka~~~~~e~~k~~  143 (145)
T d1zu2a1         128 MT------AKAPQLHAEAYKQG  143 (145)
T ss_dssp             HH------HTHHHHHHHHHHSS
T ss_pred             HH------HHHHHHHHHHHHHh
Confidence            33      34555555555443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=9e-05  Score=46.85  Aligned_cols=83  Identities=12%  Similarity=-0.063  Sum_probs=63.3

Q ss_pred             hhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhh
Q 018582          232 AKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVF  311 (353)
Q Consensus       232 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  311 (353)
                      ...+-.+...+.+.|++++|+..|++.++..............++..+..++.+.|++++|...++++++.+| .+..++
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P-~~~~a~   83 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP-EHQRAN   83 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCc-CCHHHH
Confidence            3444567788889999999999999887763111111112357899999999999999999999999999998 777777


Q ss_pred             HHHH
Q 018582          312 EPLI  315 (353)
Q Consensus       312 ~~l~  315 (353)
                      +.+.
T Consensus        84 ~Nl~   87 (95)
T d1tjca_          84 GNLK   87 (95)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7663

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.62  E-value=0.0011  Score=46.06  Aligned_cols=90  Identities=12%  Similarity=0.035  Sum_probs=46.1

Q ss_pred             HHHhcCChhHHHHHHHHHHHcCCCCC----------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcc-----CCCC---
Q 018582           65 ALAAVNDISGAERVIEEMKRDGRVAA----------DWTTFSNLASIYVEAGLFEKAERALKELENRN-----AHRD---  126 (353)
Q Consensus        65 ~~~~~~~~~~a~~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~---  126 (353)
                      .+...|++++|+..|++.++.....|          ....|+.+..+|.+.|++++|...+++.....     ..++   
T Consensus        18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~   97 (156)
T d2hr2a1          18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK   97 (156)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence            34445566666666665554211111          12455566666666666666666666554311     1111   


Q ss_pred             --HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 018582          127 --LSAYQFLITLYGQTGNLSEVYRIWRSLR  154 (353)
Q Consensus       127 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~  154 (353)
                        ..+++.+..+|...|++++|++.|++..
T Consensus        98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al  127 (156)
T d2hr2a1          98 LWISAVYSRALALDGLGRGAEAMPEFKKVV  127 (156)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence              1234455566666666666666666543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.61  E-value=0.001  Score=46.20  Aligned_cols=20  Identities=15%  Similarity=-0.086  Sum_probs=11.2

Q ss_pred             HHHccCCHHHHHHHHHHHHH
Q 018582          136 LYGQTGNLSEVYRIWRSLRL  155 (353)
Q Consensus       136 ~~~~~~~~~~a~~~~~~~~~  155 (353)
                      .+...|++++|++.|++..+
T Consensus        18 ~~~~~g~y~~Ai~~y~~Al~   37 (156)
T d2hr2a1          18 RQLVAGEYDEAAANCRRAME   37 (156)
T ss_dssp             HHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHH
Confidence            34455666666666665544

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=0.00064  Score=42.73  Aligned_cols=28  Identities=21%  Similarity=0.151  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 018582           94 TFSNLASIYVEAGLFEKAERALKELENR  121 (353)
Q Consensus        94 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~  121 (353)
                      +++.|..++.+.|++++|+..+++..+.
T Consensus        48 ~l~~Lg~~~~~~g~~~~A~~~y~~aL~l   75 (95)
T d1tjca_          48 VLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (95)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence            3444444444444444444444444443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.92  E-value=0.022  Score=37.85  Aligned_cols=50  Identities=14%  Similarity=0.006  Sum_probs=24.1

Q ss_pred             CChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHh----cCChhhHHHHHHHHHhcCC
Q 018582          246 GDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQ----EKDVDGAEGFLEILKKAVD  304 (353)
Q Consensus       246 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~  304 (353)
                      .+.++|.++|++..+.|         ++.....|...|..    ..+.++|.++|++..+.|.
T Consensus        73 ~d~~~A~~~~~~aa~~g---------~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          73 KDLRKAAQYYSKACGLN---------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             CCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             hhhHHHHHHHhhhhccC---------cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            34555666666655554         22223333333333    3355556666665555544

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.89  E-value=0.025  Score=37.54  Aligned_cols=81  Identities=15%  Similarity=0.021  Sum_probs=46.8

Q ss_pred             CChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHc----cCC
Q 018582          176 KDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAK----EGRLENAEELKERARRRGADPNAKTWEIFSDYYLR----NGD  247 (353)
Q Consensus       176 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~  247 (353)
                      .+.++|.+.+++..+.|   ++.....|...|..    ..+.++|.++|++..+.|   ++.....|...|..    ..+
T Consensus        37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d  110 (133)
T d1klxa_          37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN  110 (133)
T ss_dssp             SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred             cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence            44556666666655554   33344444444443    235667777777776655   33444445455543    356


Q ss_pred             hHHHHHHHHHHHHcC
Q 018582          248 MKLAVDCLEKAIDTG  262 (353)
Q Consensus       248 ~~~a~~~~~~~~~~~  262 (353)
                      .++|.++|++..+.|
T Consensus       111 ~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_         111 EKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHCC
Confidence            777777777777776

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=96.32  E-value=0.06  Score=34.64  Aligned_cols=136  Identities=14%  Similarity=0.180  Sum_probs=66.4

Q ss_pred             hcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHhC-CCCChhHHHHHHHHHHhcCChhHHH
Q 018582          104 EAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQTGNLSEVYRIWRSLRLAF-PNTANISYLNMIQVLVNLKDLPGAE  182 (353)
Q Consensus       104 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~  182 (353)
                      -.|.+++..+++.+...+   .+..-||-+|--....-+-+...++++.+-..- +.|- .-...++.++...+.     
T Consensus        14 ldG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C-~Nlk~vv~C~~~~n~-----   84 (161)
T d1wy6a1          14 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKC-QNLKSVVECGVINNT-----   84 (161)
T ss_dssp             HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGC-SCTHHHHHHHHHTTC-----
T ss_pred             HhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchhh-hcHHHHHHHHHHhcc-----
Confidence            346666666666666543   233445555555555555555555555442220 0000 011122222222211     


Q ss_pred             HHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 018582          183 KCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTG  262 (353)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  262 (353)
                                   +...++..++.....|+-++..++++.+.+.+ +|++...-.+..+|.+.|...++-+++.+..+.|
T Consensus        85 -------------~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G  150 (161)
T d1wy6a1          85 -------------LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG  150 (161)
T ss_dssp             -------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             -------------hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence                         22334444555555666666666666655432 4455555556666666666666666666666655

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=95.42  E-value=0.16  Score=32.59  Aligned_cols=140  Identities=14%  Similarity=0.036  Sum_probs=94.2

Q ss_pred             HHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHH
Q 018582          137 YGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENA  216 (353)
Q Consensus       137 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a  216 (353)
                      +.-.|..++..+++.+.....   +..-|+.++--....-+-+...++++.+-+.-   |.          ..+++....
T Consensus        12 ~ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~F---Dl----------s~C~Nlk~v   75 (161)
T d1wy6a1          12 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYF---DL----------DKCQNLKSV   75 (161)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS---CG----------GGCSCTHHH
T ss_pred             HHHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhhc---Cc----------hhhhcHHHH
Confidence            345677888888877776542   44566777766666666666666666654321   11          123333333


Q ss_pred             HHHHHHHHhcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHH
Q 018582          217 EELKERARRRGADPNAKTWEIFSDYYLRNGDMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFL  296 (353)
Q Consensus       217 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  296 (353)
                      ...+-.+-     .+...+...++.+...|.-++-.++++.+.+.+       .|++...-.+..+|.+.|+..++..++
T Consensus        76 v~C~~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-------~i~~~~llkia~A~kkig~~re~nell  143 (161)
T d1wy6a1          76 VECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-------EVSASILVAIANALRRVGDERDATTLL  143 (161)
T ss_dssp             HHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-------CSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHhcchhhHHHHH
Confidence            33333221     144566677788888899999999999877764       388888889999999999999999999


Q ss_pred             HHHHhcCC
Q 018582          297 EILKKAVD  304 (353)
Q Consensus       297 ~~~~~~~~  304 (353)
                      .+.-+.|.
T Consensus       144 ~~ACe~G~  151 (161)
T d1wy6a1         144 IEACKKGE  151 (161)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHHHhH
Confidence            99888876

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.16  E-value=0.21  Score=32.20  Aligned_cols=72  Identities=13%  Similarity=0.096  Sum_probs=46.4

Q ss_pred             CChhhHHHHHHHHHcc---CChHHHHHHHHHHHHcCCCCCCCCccc--HHHHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 018582          230 PNAKTWEIFSDYYLRN---GDMKLAVDCLEKAIDTGRGDGGKWVPS--SETIRTFMRHFEQEKDVDGAEGFLEILKKAVD  304 (353)
Q Consensus       230 p~~~~~~~li~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  304 (353)
                      |...|--....++.+.   .+.++++.+++.+.+.+        |.  ...+..|..+|.+.|+++.|.+.++.+.+..|
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~--------p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP  104 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--------ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER  104 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--------GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC--------chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            3444544555555544   34567777887777665        43  24666677777888888888888888887776


Q ss_pred             CCChhh
Q 018582          305 DLGVEV  310 (353)
Q Consensus       305 ~~~~~~  310 (353)
                       .+..+
T Consensus       105 -~n~qA  109 (124)
T d2pqrb1         105 -NNKQV  109 (124)
T ss_dssp             -TCHHH
T ss_pred             -CcHHH
Confidence             44443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.85  E-value=0.26  Score=31.74  Aligned_cols=25  Identities=20%  Similarity=0.065  Sum_probs=11.2

Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHh
Q 018582          132 FLITLYGQTGNLSEVYRIWRSLRLA  156 (353)
Q Consensus       132 ~l~~~~~~~~~~~~a~~~~~~~~~~  156 (353)
                      .|.-+|.+.|++++|.+.++.+.+.
T Consensus        78 ~Lav~yyklgdy~~A~~~~~~~L~i  102 (124)
T d2pqrb1          78 YLTIGCYKLGEYSMAKRYVDTLFEH  102 (124)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            3334444444444444444444443

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.91  E-value=0.34  Score=29.36  Aligned_cols=64  Identities=19%  Similarity=0.250  Sum_probs=49.5

Q ss_pred             ChHHHHHHHHHHHHcCCCCCCCCcccHHHHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCChhhhHHHHHH
Q 018582          247 DMKLAVDCLEKAIDTGRGDGGKWVPSSETIRTFMRHFEQEKDVDGAEGFLEILKKAVDDLGVEVFEPLIRT  317 (353)
Q Consensus       247 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  317 (353)
                      +.-++.+-+..+....      ..|++.+..+-+++|.+.+++..|.++++.++...- ++...|..++.-
T Consensus        21 D~we~rrgmN~l~~~D------lVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~-~~k~~y~yilqe   84 (105)
T d1v54e_          21 DAWELRKGMNTLVGYD------LVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG-PHKEIYPYVIQE   84 (105)
T ss_dssp             CHHHHHHHHHHHTTSS------BCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCTTHHHHHHHH
T ss_pred             cHHHHHHHHHHHhccc------cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc-CcHHHHHHHHHH
Confidence            3445566666666666      669999999999999999999999999998886554 456677776553

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.96  E-value=0.52  Score=28.56  Aligned_cols=60  Identities=10%  Similarity=0.098  Sum_probs=39.3

Q ss_pred             hHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCChhhHHHHH
Q 018582          179 PGAEKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERARRRGADPNAKTWEIFS  239 (353)
Q Consensus       179 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li  239 (353)
                      -++.+-++.+......|++.+..+.+++|.+.+++..|.++|+.++.+ +.++...|..++
T Consensus        23 we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yil   82 (105)
T d1v54e_          23 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI   82 (105)
T ss_dssp             HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred             HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHH
Confidence            345556666666667777777777777777777777777777777654 233444555444

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=83.17  E-value=9.7  Score=30.43  Aligned_cols=115  Identities=10%  Similarity=-0.024  Sum_probs=58.1

Q ss_pred             CCHHHHHHHHHHHHHccCCCCHHHHHHH----HHHHHccCCHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhHH
Q 018582          106 GLFEKAERALKELENRNAHRDLSAYQFL----ITLYGQTGNLSEVYRIWRSLRLAFPNTANISYLNMIQVLVNLKDLPGA  181 (353)
Q Consensus       106 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  181 (353)
                      .+.+.|...+......... +...+..+    .......+..+.+...+......+.  +.......+......+++..+
T Consensus       228 ~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~~~  304 (450)
T d1qsaa1         228 QDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGL  304 (450)
T ss_dssp             HCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHH
T ss_pred             cChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--chHHHHHHHHHHHHcCChHHH
Confidence            4556666666665443222 22222211    1222334555666666655544332  333333344445556677777


Q ss_pred             HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 018582          182 EKCFKEWESGCATYDIRVTNVMIGAYAKEGRLENAEELKERAR  224 (353)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~  224 (353)
                      ...+..+.... .......--+..++...|+.++|...|..+.
T Consensus       305 ~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a  346 (450)
T d1qsaa1         305 NTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLM  346 (450)
T ss_dssp             HHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHh
Confidence            77766654322 1123333445566667777777777777654

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=81.60  E-value=11  Score=30.05  Aligned_cols=74  Identities=19%  Similarity=0.120  Sum_probs=42.6

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHcc
Q 018582           61 VWMRALAAVNDISGAERVIEEMKRDGRVAADWTTFSNLASIYVEAGLFEKAERALKELENRNAHRDLSAYQFLITLYGQT  140 (353)
Q Consensus        61 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  140 (353)
                      ..+..+.+.+++......+    . . .+.+...-.....+....|+.+.|...+..+-..|.. .+..+..+...+...
T Consensus        77 ~~l~~L~~~~~w~~~~~~~----~-~-~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~  149 (450)
T d1qsaa1          77 RFVNELARREDWRGLLAFS----P-E-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRAS  149 (450)
T ss_dssp             HHHHHHHHTTCHHHHHHHC----C-S-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHT
T ss_pred             HHHHHHHhccCHHHHHHhc----c-C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CchHHHHHHHHHHhc
Confidence            3455667777766544333    1 1 3455555566777777888888888777776554433 223444454444444


Q ss_pred             C
Q 018582          141 G  141 (353)
Q Consensus       141 ~  141 (353)
                      |
T Consensus       150 ~  150 (450)
T d1qsaa1         150 G  150 (450)
T ss_dssp             T
T ss_pred             C
Confidence            3