Citrus Sinensis ID: 018594

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350---
MQIFGQNPDRIVEGYSEEFEAGFLELMRRSHRFSRIAATVVYNEYIHDRHHVHMNSTRWATLTEFVKYLGRTGKCKVEETPKGWFITYIDRDSETLFKEKMKNKRIKLDMVDEERQEREIQKQIEIAASSSVSSTNPLSNSEDNTTRELNLEAAAAVGKVGFALGSSYKDNVTSNGSGNNGSSSTRLVFEELDKDNNNNNNNNRKIDKNGSKVSGNSALEELMREEEKVKEKMNRKDYWLCEGIIVKVMSKALADKGYNKQKGVVRKVIDKYVGEIEMLEKKHVLRVDQDELETVIPQIGGLVRIVNGAYRGSNARLLGVDTDKFCAQVKIEKGVYDGRVLNAIDYEDICKLA
cccccccHHHHHHHHHHHHHHHHHHHHHHcccccEEcccEEEEEcccccccccccccccccHHHHHHHHcccccEEEEEccccEEEEEEcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccEEEEEEcccccccccccccEEEEEccccEEEEEEcccccEEEEccccccccccccccEEEEEEccccccEEEEEEEEccccEEEEEEEcccccccEEEccccccccccc
cEEEEcccHHHHHHHHHHHHHHHHHHHHHHccccEEcHHHHHHHHHHcccccEccccHHHHHHHHHHHHccccEEEEEcccccEEEEEEcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHccccccccccEEEcccccccccccccccccccccccHcccccHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccEEEEEEEcEcccccEEcEEEEEEEEEccEEEEEEEEccccEEEEcHHHcEEEccccccEEEEEEccccccEEEEEEEccccEEEEEEEEccccccEEEEcEcHHHHHHcc
mqifgqnpdrivEGYSEEFEAGFLELMRRSHRFSRIAATVVYneyihdrhhvhmnstRWATLTEFVKYLGrtgkckveetpkgwfityIDRDSETLFKEKMKNKRIKLDMVDEERQEREIQKQIEIAasssvsstnplsnsednttRELNLEAAAAVGKVGFALgssykdnvtsngsgnngsssTRLVFEELdkdnnnnnnnnrkidkngskvsgNSALEELMREEEKVKEKMNRKDYWLCEGIIVKVMSKALadkgynkqkgVVRKVIDKYVGEIEMLEKKHVLRVDQDELETVIPQIGGLVRIVNgayrgsnarllgvdtdkfCAQVKIEkgvydgrvlnaiDYEDICKLA
mqifgqnpdriveGYSEEFEAGFLELMRRSHRFSRIAATVVYNEYIHDRhhvhmnstrWATLTEFVKYLGrtgkckveetpkgwfityidrdsetlfkekmknkrikldmvdeerQEREIQKQieiaasssvsstnplsnSEDNTTRELNLEAAAAVGKVGFALGSSYKdnvtsngsgnngssSTRLVFEELDkdnnnnnnnnrkidkngskvsgnsaLEELMREEEKvkekmnrkdywlCEGIIVKVMSKaladkgynkqkgvvrkVIDKYVGEIEMLekkhvlrvdqdeletvipqigglvRIVNGAYRGSNARLLGVDTDKFCAQVKiekgvydgrvlnaidyedickla
MQIFGQNPDRIVEGYSEEFEAGFLELMRRSHRFSRIAATVVYNEYIHDRHHVHMNSTRWATLTEFVKYLGRTGKCKVEETPKGWFITYIDRDSETLFKEKMKNKRIKLDMVDeerqereiqkqieiAAsssvsstnplsnsEDNTTRELNLEAAAAVGKVGFALGSSYKDNVTsngsgnngsssTRLVFEELDKDnnnnnnnnRKIDKNGSKVSGNSAleelmreeekvkekmnrkDYWLCEGIIVKVMSKALADKGYNKQKGVVRKVIDKYVGEIEMLEKKHVLRVDQDELETVIPQIGGLVRIVNGAYRGSNARLLGVDTDKFCAQVKIEKGVYDGRVLNAIDYEDICKLA
**********IVEGYSEEFEAGFLELMRRSHRFSRIAATVVYNEYIHDRHHVHMNSTRWATLTEFVKYLGRTGKCKVEETPKGWFITYIDRDSETLF*********************************************************AAVGKVGFAL************************************************************************DYWLCEGIIVKVMSKALADKGYNKQKGVVRKVIDKYVGEIEMLEKKHVLRVDQDELETVIPQIGGLVRIVNGAYRGSNARLLGVDTDKFCAQVKIEKGVYDGRVLNAIDYEDICK**
*Q*****PDRIVEGYSEEFEAGFLELMRRSHRFSRIAATVVYNEYIHDRHHVHMNSTRWATLTEFVKYLGRTGKCKVEETPKGWFITYI****************************************************************************************************************************************************YWLCEGIIVKVMSKALADKGYNKQKGVVRKVIDKYVGEIEMLEKKHVLRVDQDELETVIPQIGGLVRIVNGAYRGSNARLLGVDTDKFCAQVKIEKGVYDGRVLNAIDYEDICKLA
MQIFGQNPDRIVEGYSEEFEAGFLELMRRSHRFSRIAATVVYNEYIHDRHHVHMNSTRWATLTEFVKYLGRTGKCKVEETPKGWFITYIDRDSETLFKEKMKNKRIKLDMVDEERQEREIQKQIEIAA*****************TRELNLEAAAAVGKVGFALGSSYKDNVTSNGSGNNGSSSTRLVFEELDKDNNNNNNNNRKIDKNGSKVSGNSALEELMREEEKVKEKMNRKDYWLCEGIIVKVMSKALADKGYNKQKGVVRKVIDKYVGEIEMLEKKHVLRVDQDELETVIPQIGGLVRIVNGAYRGSNARLLGVDTDKFCAQVKIEKGVYDGRVLNAIDYEDICKLA
MQIFGQNPDRIVEGYSEEFEAGFLELMRRSHRFSRIAATVVYNEYIHDRHHVHMNSTRWATLTEFVKYLGRTGKCKVEETPKGWFITYIDRDSETLFKEKMKNKR*****VDEERQEREIQKQIEIAASS****************************************************************************************LEELMREEEKVKEKMNRKDYWLCEGIIVKVMSKALADKGYNKQKGVVRKVIDKYVGEIEMLEKKHVLRVDQDELETVIPQIGGLVRIVNGAYRGSNARLLGVDTDKFCAQVKIEKGVYDGRVLNAIDYEDICKLA
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MQIFGQNPDRIVEGYSEEFEAGFLELMRRSHRFSRIAATVVYNEYIHDRHHVHMNSTRWATLTEFVKYLGRTGKCKVEETPKGWFITYIDRDSETLFKEKMKxxxxxxxxxxxxxxxxxxxxxIEIAASSSVSSTNPLSNSEDNTTRELNLEAAAAVGKVGFALGSSYKDNVTSNGSGNNGSSSTRLVFEELDKDNNNNNNNNRKIDKNGSKVSGxxxxxxxxxxxxxxxxxxxxxDYWLCEGIIVKVMSKALADKGYNKQKGVVRKVIDKYVGEIEMLEKKHVLRVDQDELETVIPQIGGLVRIVNGAYRGSNARLLGVDTDKFCAQVKIEKGVYDGRVLNAIDYEDICKLA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query353 2.2.26 [Sep-21-2011]
Q8K339391 DNA/RNA-binding protein K yes no 0.943 0.851 0.379 2e-62
O60870393 DNA/RNA-binding protein K yes no 0.940 0.844 0.373 1e-55
Q9Y7X9304 KIN17-like protein OS=Sch yes no 0.388 0.450 0.395 4e-26
P40962232 Zinc finger protein RTS2 yes no 0.181 0.275 0.531 5e-13
Q55D16445 KIN17-like protein OS=Dic yes no 0.269 0.213 0.393 4e-12
Q9C801462 Protein MOS2 OS=Arabidops no no 0.356 0.272 0.316 0.0001
>sp|Q8K339|KIN17_MOUSE DNA/RNA-binding protein KIN17 OS=Mus musculus GN=Kin PE=2 SV=1 Back     alignment and function desciption
 Score =  239 bits (610), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 136/358 (37%), Positives = 204/358 (56%), Gaps = 25/358 (6%)

Query: 1   MQIFGQNPDRIVEGYSEEFEAGFLELMRRSHRFSRIAATVVYNEYIHDRHHVHMNSTRWA 60
           + +  +NP + ++ +SEEF   FLEL+RR     R+   +VYNEYI  R H+HMN+T+W 
Sbjct: 54  LLLASENPQQFMDYFSEEFRNDFLELLRRRFGTKRVHNNIVYNEYISHREHIHMNATQWE 113

Query: 61  TLTEFVKYLGRTGKCKVEETPKGWFITYIDRDSETLFKEKMKNKRIKLDMVDEERQEREI 120
           TLT+F K+LGR G CKV+ETPKGW+I YIDRD ET+ ++    K+ K D+ DEE+  + I
Sbjct: 114 TLTDFTKWLGREGLCKVDETPKGWYIQYIDRDPETIRRQLELEKKKKQDLDDEEKTAKFI 173

Query: 121 QKQIEIAASSSVSSTNPLS-----NSEDNTTRELNLEAAAAVGKVGFALGSSYKDNVTSN 175
           ++Q+          T   +     N E+  T  LN  A  + G              T++
Sbjct: 174 EEQVRRGLEGKEQETPVFTELSRENEEEKVTFNLNKGAGGSAG-------------ATTS 220

Query: 176 GSGNNGSSSTRLVFEELDKDNNNNNNNNRKIDKNGSKVSGNSALEELMREEEKVKEKMNR 235
            S + G S+ +L+          ++ ++ +  K        SAL+E+M  EE+ K++  R
Sbjct: 221 KSSSLGPSALKLLGSAASGKRKESSQSSAQPAKK-----KKSALDEIMELEEE-KKRTAR 274

Query: 236 KDYWLCEGIIVKVMSKALADKGYNKQKGVVRKVIDKYVGEIEMLEKKHVLRVDQDELETV 295
            D WL  GI+VK+++K L +K Y+K+KGVV++VID+Y   ++M +    L++DQ  LETV
Sbjct: 275 TDAWLQPGIVVKIITKKLGEK-YHKKKGVVKEVIDRYTAVVKMTDSGDRLKLDQTHLETV 333

Query: 296 IPQIGGLVRIVNGAYRGSNARLLGVDTDKFCAQVKIEKGVYDGRVLNAIDYEDICKLA 353
           IP  G  V ++NG YRG+   L  ++   F A + IE G   GR +  I YEDI KLA
Sbjct: 334 IPAPGKRVLVLNGGYRGNEGTLESINEKAFSATIVIETGPLKGRRVEGIQYEDISKLA 391
Involved in DNA replication and the cellular response to DNA damage. May participate in DNA replication factories and create a bridge between DNA replication and repair mediated by high molecular weight complexes. May play a role in illegitimate recombination and regulation of gene expression. May participate in mRNA processing. Binds, in vitro, to double-stranded DNA. Also shown to bind preferentially to curved DNA in vitro and in vivo. Binds via its C-terminal domain to RNA in vitro.
Mus musculus (taxid: 10090)
>sp|O60870|KIN17_HUMAN DNA/RNA-binding protein KIN17 OS=Homo sapiens GN=KIN PE=1 SV=2 Back     alignment and function description
>sp|Q9Y7X9|KIN17_SCHPO KIN17-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC365.09c PE=3 SV=1 Back     alignment and function description
>sp|P40962|RTS2_YEAST Zinc finger protein RTS2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RTS2 PE=1 SV=1 Back     alignment and function description
>sp|Q55D16|KIN17_DICDI KIN17-like protein OS=Dictyostelium discoideum GN=DDB_G0269816 PE=3 SV=1 Back     alignment and function description
>sp|Q9C801|MOS2_ARATH Protein MOS2 OS=Arabidopsis thaliana GN=MOS2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query353
357494399398 DNA/RNA-binding protein KIN17 [Medicago 0.963 0.854 0.706 1e-134
255568032398 zinc finger protein, putative [Ricinus c 0.963 0.854 0.725 1e-133
356553387398 PREDICTED: DNA/RNA-binding protein KIN17 0.968 0.859 0.710 1e-133
356501495398 PREDICTED: DNA/RNA-binding protein KIN17 0.968 0.859 0.699 1e-132
224112785400 predicted protein [Populus trichocarpa] 0.966 0.852 0.704 1e-131
449455862397 PREDICTED: DNA/RNA-binding protein KIN17 0.966 0.858 0.701 1e-128
225455904391 PREDICTED: DNA/RNA-binding protein KIN17 0.940 0.849 0.664 1e-128
18405389411 DNA/RNA-binding protein Kin17 conserved 0.988 0.849 0.665 1e-128
297847902412 hypothetical protein ARALYDRAFT_474601 [ 0.980 0.839 0.669 1e-128
224098413396 predicted protein [Populus trichocarpa] 0.960 0.856 0.683 1e-124
>gi|357494399|ref|XP_003617488.1| DNA/RNA-binding protein KIN17 [Medicago truncatula] gi|217073510|gb|ACJ85115.1| unknown [Medicago truncatula] gi|355518823|gb|AET00447.1| DNA/RNA-binding protein KIN17 [Medicago truncatula] gi|388497062|gb|AFK36597.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 253/358 (70%), Positives = 295/358 (82%), Gaps = 18/358 (5%)

Query: 1   MQIFGQNPDRIVEGYSEEFEAGFLELMRRSHRFSRIAATVVYNEYIHDRHHVHMNSTRWA 60
           MQIFGQNP RI+EGY+EEFE  FLE M+RSHRFSR+AATVVYNEYI+DR+HVHMNST WA
Sbjct: 54  MQIFGQNPTRIIEGYTEEFETTFLEHMKRSHRFSRVAATVVYNEYINDRNHVHMNSTEWA 113

Query: 61  TLTEFVKYLGRTGKCKVEETPKGWFITYIDRDSETLFKEKMKNKRIKLDMVDEERQEREI 120
           TLTEFVKYLGRTGKCKVEETPKGWFITYIDRDSETLFKEKMKNKRIK D+VDEE+QE+EI
Sbjct: 114 TLTEFVKYLGRTGKCKVEETPKGWFITYIDRDSETLFKEKMKNKRIKADLVDEEKQEKEI 173

Query: 121 QKQIEIAASSSVSSTNPLSN---SEDNTTRELNLEAAAAVGKVGFALGSSYKDNVTSNGS 177
           QKQIE  A   +  +NP S+   S+  TT+ELN+E      K+GF+LGSS K      G 
Sbjct: 174 QKQIE-RAEQMMQQSNPESDQPSSQVQTTKELNVEDGT---KIGFSLGSSAKPVTKETGD 229

Query: 178 GNNGSSSTRLVFEELDKDN--NNNNNNNRKIDKNGSKVSGNSALEELMREEEKVKEKMNR 235
                 ++R+VF+E+D++     N  NN K  ++G    G SALEE++REEE++KEK NR
Sbjct: 230 ------ASRIVFDEVDEEKYEERNPKNNLKRKESGG---GKSALEEMIREEERIKEKNNR 280

Query: 236 KDYWLCEGIIVKVMSKALADKGYNKQKGVVRKVIDKYVGEIEMLEKKHVLRVDQDELETV 295
           KDYWL EGI+VKVMSK LA+KGY KQKGVV+KVIDKYVGEIEMLE KHVLRVDQ+ELETV
Sbjct: 281 KDYWLHEGIVVKVMSKVLAEKGYYKQKGVVKKVIDKYVGEIEMLESKHVLRVDQEELETV 340

Query: 296 IPQIGGLVRIVNGAYRGSNARLLGVDTDKFCAQVKIEKGVYDGRVLNAIDYEDICKLA 353
           IPQ+GG V+IVNGAYRGS ARLLGVDTD+FCA+V+IEKG YDGRVL A++YEDICK+A
Sbjct: 341 IPQVGGRVKIVNGAYRGSLARLLGVDTDRFCAKVQIEKGAYDGRVLKAVEYEDICKVA 398

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255568032|ref|XP_002524993.1| zinc finger protein, putative [Ricinus communis] gi|223535737|gb|EEF37400.1| zinc finger protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356553387|ref|XP_003545038.1| PREDICTED: DNA/RNA-binding protein KIN17-like isoform 1 [Glycine max] gi|356553389|ref|XP_003545039.1| PREDICTED: DNA/RNA-binding protein KIN17-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356501495|ref|XP_003519560.1| PREDICTED: DNA/RNA-binding protein KIN17-like isoform 1 [Glycine max] gi|356501497|ref|XP_003519561.1| PREDICTED: DNA/RNA-binding protein KIN17-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|224112785|ref|XP_002316291.1| predicted protein [Populus trichocarpa] gi|222865331|gb|EEF02462.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449455862|ref|XP_004145669.1| PREDICTED: DNA/RNA-binding protein KIN17-like [Cucumis sativus] gi|449533194|ref|XP_004173561.1| PREDICTED: DNA/RNA-binding protein KIN17-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225455904|ref|XP_002275968.1| PREDICTED: DNA/RNA-binding protein KIN17 [Vitis vinifera] Back     alignment and taxonomy information
>gi|18405389|ref|NP_564690.1| DNA/RNA-binding protein Kin17 conserved region-containing protein [Arabidopsis thaliana] gi|13430440|gb|AAK25842.1|AF360132_1 unknown protein [Arabidopsis thaliana] gi|4204268|gb|AAD10649.1| Similar to Kin17 protein [Arabidopsis thaliana] gi|15293155|gb|AAK93688.1| unknown protein [Arabidopsis thaliana] gi|332195127|gb|AEE33248.1| DNA/RNA-binding protein Kin17 conserved region-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297847902|ref|XP_002891832.1| hypothetical protein ARALYDRAFT_474601 [Arabidopsis lyrata subsp. lyrata] gi|297337674|gb|EFH68091.1| hypothetical protein ARALYDRAFT_474601 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|224098413|ref|XP_002311165.1| predicted protein [Populus trichocarpa] gi|222850985|gb|EEE88532.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query353
TAIR|locus:2193859411 AT1G55460 [Arabidopsis thalian 0.985 0.846 0.584 8.6e-104
TAIR|locus:504954922347 AT5G51795 "AT5G51795" [Arabido 0.288 0.293 0.709 1.4e-73
UNIPROTKB|E1BND1392 E1BND1 "Uncharacterized protei 0.303 0.272 0.523 2.3e-54
RGD|1596107392 Kin "antigenic determinant of 0.303 0.272 0.523 4.8e-54
UNIPROTKB|E2RNV7391 KIN "Uncharacterized protein" 0.303 0.273 0.523 7.8e-54
UNIPROTKB|J9NZP3392 KIN "Uncharacterized protein" 0.303 0.272 0.523 7.8e-54
UNIPROTKB|O60870393 KIN "DNA/RNA-binding protein K 0.303 0.272 0.523 9.9e-54
MGI|MGI:96676391 Kin "antigenic determinant of 0.303 0.273 0.523 1.3e-53
UNIPROTKB|E1C8B5396 KIN "Uncharacterized protein" 0.269 0.239 0.536 1.6e-51
FB|FBgn0024887390 kin17 "kin17" [Drosophila mela 0.311 0.282 0.427 1.6e-51
TAIR|locus:2193859 AT1G55460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1028 (366.9 bits), Expect = 8.6e-104, P = 8.6e-104
 Identities = 212/363 (58%), Positives = 252/363 (69%)

Query:     1 MQIFGQNPDRIVEGYSEEFEAGFLELMRRSHRFSRIAATVVYNEYIHDRHHVHMNSTRWA 60
             MQ+FGQNP R+V+GYSEEFE  FL+LMRRSHRFSRIAATVVYNEYI+DRHHVHMNST WA
Sbjct:    54 MQVFGQNPTRVVDGYSEEFEQTFLDLMRRSHRFSRIAATVVYNEYINDRHHVHMNSTEWA 113

Query:    61 TLTEFVKYLGRTGKCKVEETPKGWFITYIDRDSETLFKEKMKNKRIKLDMVDXXXXXXXX 120
             TLTEF+K+LG+TGKCKVEETPKGWFITYIDRDSETLFKE++KNKR+K D+ +        
Sbjct:   114 TLTEFIKHLGKTGKCKVEETPKGWFITYIDRDSETLFKERLKNKRVKSDLAEEEKQEREI 173

Query:   121 XXXXXXAAXXXXXXXXXXXXX---------EDNTTRELNLEAAAAVGKVGFALGSSYKDN 171
                   AA                      +D   ++ +L   + V KVGFALG   K  
Sbjct:   174 QRQIERAAEKLNGGGGEGETSGNDEVVDDGDDERKKDEDLRLKSGV-KVGFALGGGVKQV 232

Query:   172 VTXXXXXXXXXXXTRLVFEELDKDXXXXXXXXRKIDKNG-SKVSGNSAXXXXXXXXXXXX 230
              T           ++L+F + + D        ++   +G S+    SA            
Sbjct:   233 ATGKERGES----SKLLFGDEENDKVERGEKRKRSGDSGRSEKERRSALDELMKEEEKKK 288

Query:   231 XXXXXXDYWLCEGIIVKVMSKALADKGYNKQKGVVRKVIDKYVGEIEMLEKKHVLRVDQD 290
                   DYWL EGIIVKVMSKALA+KGY KQKGVV+KVID YVGEI+ML+ KHVLRVDQ 
Sbjct:   289 ERMNRKDYWLFEGIIVKVMSKALAEKGYYKQKGVVKKVIDNYVGEIKMLDSKHVLRVDQK 348

Query:   291 ELETVIPQIGGLVRIVNGAYRGSNARLLGVDTDKFCAQVKIEKGVYDGRVLNAIDYEDIC 350
             ELETV+PQIGG+V+IVNGAYRGSNARLLGVDT+KFCA+V+IEKGVYDGRV+ +I+YEDIC
Sbjct:   349 ELETVLPQIGGMVKIVNGAYRGSNARLLGVDTEKFCAKVQIEKGVYDGRVIKSIEYEDIC 408

Query:   351 KLA 353
             KLA
Sbjct:   409 KLA 411
GO:0005622 "intracellular" evidence=IEA
GO:0008150 "biological_process" evidence=ND
GO:0008270 "zinc ion binding" evidence=IEA
GO:0000226 "microtubule cytoskeleton organization" evidence=RCA
TAIR|locus:504954922 AT5G51795 "AT5G51795" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E1BND1 E1BND1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1596107 Kin "antigenic determinant of rec-A protein homolog (mouse)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2RNV7 KIN "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9NZP3 KIN "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|O60870 KIN "DNA/RNA-binding protein KIN17" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:96676 Kin "antigenic determinant of rec-A protein" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1C8B5 KIN "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
FB|FBgn0024887 kin17 "kin17" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8K339KIN17_MOUSENo assigned EC number0.37980.94330.8516yesno
O60870KIN17_HUMANNo assigned EC number0.37390.94050.8447yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00101992
hypothetical protein (400 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query353
pfam10357127 pfam10357, Kin17_mid, Domain of Kin17 curved DNA-b 1e-66
cd1315554 cd13155, KOW_KIN17, KOW_Kin17 is a RNA-binding mot 1e-22
>gnl|CDD|220714 pfam10357, Kin17_mid, Domain of Kin17 curved DNA-binding protein Back     alignment and domain information 
 Score =  205 bits (524), Expect = 1e-66
 Identities = 71/125 (56%), Positives = 94/125 (75%)

Query: 1   MQIFGQNPDRIVEGYSEEFEAGFLELMRRSHRFSRIAATVVYNEYIHDRHHVHMNSTRWA 60
           M +FGQNP + ++ +S+EFE  FL+L+R  H   RI A  VYNEYI D+ HVHMN+TRW 
Sbjct: 3   MLLFGQNPKKFIDQFSKEFEKDFLQLLRTRHGEKRIHANKVYNEYIADKDHVHMNATRWT 62

Query: 61  TLTEFVKYLGRTGKCKVEETPKGWFITYIDRDSETLFKEKMKNKRIKLDMVDEERQEREI 120
           +LTEFVKYLGR GKCKVEET KGWFITYIDR  E L +++   K+ K +  DEER+++ +
Sbjct: 63  SLTEFVKYLGREGKCKVEETEKGWFITYIDRSPEALKRQEELRKKEKQEKTDEEREQKLL 122

Query: 121 QKQIE 125
           ++QI+
Sbjct: 123 EEQIK 127

Kin17_mid is the conserved central 169 residue region of a family of Kin17 proteins. Towards the N-terminal end there is a zinc-finger domain, and in human and mouse members there is a RecA-like domain further downstream. The Kin17 protein in humans forms intra-nuclear foci during cell proliferation and is re-distributed in the nucleoplasm during the cell cycle. Length = 127
>gnl|CDD|240519 cd13155, KOW_KIN17, KOW_Kin17 is a RNA-binding motif Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 353
KOG2837309 consensus Protein containing a U1-type Zn-finger a 100.0
PF10357127 Kin17_mid: Domain of Kin17 curved DNA-binding prot 100.0
KOG4315455 consensus G-patch nucleic acid binding protein [Ge 99.7
KOG19991024 consensus RNA polymerase II transcription elongati 98.2
PF0046732 KOW: KOW motif; InterPro: IPR005824 Ribosomes are 97.33
smart0073928 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif i 96.81
PRK1228176 rplX 50S ribosomal protein L24; Reviewed 96.22
CHL0014183 rpl24 ribosomal protein L24; Validated 96.19
TIGR00405145 L26e_arch ribosomal protein L24p/L26e, archaeal. T 95.91
PRK00004105 rplX 50S ribosomal protein L24; Reviewed 95.6
PRK01191120 rpl24p 50S ribosomal protein L24P; Validated 95.04
TIGR01079104 rplX_bact ribosomal protein L24, bacterial/organel 94.98
PTZ00194143 60S ribosomal protein L26; Provisional 94.98
PRK05609181 nusG transcription antitermination protein NusG; V 94.93
TIGR01080114 rplX_A_E ribosomal protein L24p/L26e, archaeal/euk 94.92
TIGR00922172 nusG transcription termination/antitermination fac 94.87
PRK08559153 nusG transcription antitermination protein NusG; V 94.55
COG0250178 NusG Transcription antiterminator [Transcription] 93.4
PRK04313237 30S ribosomal protein S4e; Validated 92.54
TIGR01955159 RfaH transcriptional activator RfaH. This model re 92.23
PLN00036261 40S ribosomal protein S4; Provisional 91.88
PRK09014162 rfaH transcriptional activator RfaH; Provisional 91.83
PTZ00118262 40S ribosomal protein S4; Provisional 91.65
PF1162353 DUF3252: Protein of unknown function (DUF3252); In 91.64
COG0198104 RplX Ribosomal protein L24 [Translation, ribosomal 90.71
TIGR01956258 NusG_myco NusG family protein. This model represen 89.94
COG5164 607 SPT5 Transcription elongation factor [Transcriptio 89.93
PTZ00223273 40S ribosomal protein S4; Provisional 89.54
COG1471241 RPS4A Ribosomal protein S4E [Translation, ribosoma 89.42
KOG1999 1024 consensus RNA polymerase II transcription elongati 84.98
PF1559174 Imm17: Immunity protein 17 84.54
PF15057124 DUF4537: Domain of unknown function (DUF4537) 83.68
>KOG2837 consensus Protein containing a U1-type Zn-finger and implicated in RNA splicing or processing [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=7.6e-77  Score=559.68  Aligned_cols=256  Identities=50%  Similarity=0.759  Sum_probs=213.0

Q ss_pred             CcccccCchhhHhhhHHHHHHHHHHHHHhccCCcccccceeeeeecccccceeecccccccHHHHHHHhcccccEEEeec
Q 018594            1 MQIFGQNPDRIVEGYSEEFEAGFLELMRRSHRFSRIAATVVYNEYIHDRHHVHMNSTRWATLTEFVKYLGRTGKCKVEET   80 (353)
Q Consensus         1 m~lf~enp~~~i~~fS~eF~~~Fl~lLr~~~g~krV~aN~vYneyI~dr~HiHMNaT~W~tLt~Fvk~Lgr~G~c~vdet   80 (353)
                      |++|++||+++++.||.+|+.+||+|||++||+|||+||+||||||+||+|||||||+|.|||+||+||||+|+|+||+|
T Consensus        54 l~~~~~Np~~~~~~fs~eF~~dFl~LLr~~~g~KrI~aN~VYnEYI~dR~HvHMNaT~w~SLtefvk~LGR~Gkc~vdet  133 (309)
T KOG2837|consen   54 LLLFALNPGRSLERFSNEFEKDFLSLLRQRHGTKRIGANKVYNEYIADRNHVHMNATRWRSLTEFVKYLGRTGKCKVDET  133 (309)
T ss_pred             HHHHHhCcchhHHHhHHHHHHHHHHHHHHHhccceechhHHHHHHHccccceeecchhhhhHHHHHHHhccCceeeeecC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeEEEeecCChHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhcCcCCCCCCCCCCCcchhhhhhhhhccccee
Q 018594           81 PKGWFITYIDRDSETLFKEKMKNKRIKLDMVDEERQEREIQKQIEIAASSSVSSTNPLSNSEDNTTRELNLEAAAAVGKV  160 (353)
Q Consensus        81 ekGw~I~yId~~pe~~~r~~~~~k~~~~~~~dee~~~~~i~~qi~r~~~~~~~~~~~~~~~~~~~~~el~r~~~~~~~ki  160 (353)
                      |+||||+|||++|+++.|+.+..++++++++|||+.+++|+.||.||++.      ++.+.+.+..+||.|++......+
T Consensus       134 ekgw~i~yIdk~petl~r~~~d~~r~rqe~~dEe~~~~~id~Qi~Rake~------g~~e~e~e~~~El~~d~~~~~~~v  207 (309)
T KOG2837|consen  134 EKGWFITYIDKFPETLKRIEEDLKRERQEKDDEERGADLIDGQIKRAKEQ------GEKEYEPEMNTELSRDGDDERKSV  207 (309)
T ss_pred             CCceEEEEeccChhhhcchhhHHHHHhhhhhHHHHHHHHHHHHHHHHHhc------cccccccccccccccCCccccccc
Confidence            99999999999999999999999999999999999999999999999974      111223444688988765111001


Q ss_pred             eeecCCCCCCCCCCCCCCCCCCCCcchhhhhcccccCCCCCCCcccCCCCCCCCCCChHHHHHHHHHHHHhhcCCCCCcc
Q 018594          161 GFALGSSYKDNVTSNGSGNNGSSSTRLVFEELDKDNNNNNNNNRKIDKNGSKVSGNSALEELMREEEKVKEKMNRKDYWL  240 (353)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~saLdeime~ee~kk~~~~r~~~WL  240 (353)
                      .-+...+..             ..|+...              ..+.+.+  .+++   ||||++||.+|        | 
T Consensus       208 ~~~~~~sk~-------------~~p~~kk--------------~~~~~~~--~~~r---dEi~~~ee~kk--------w-  246 (309)
T KOG2837|consen  208 VVSSALSKR-------------VNPKAKK--------------LPPDKDG--GKKR---DEIMKMEERKK--------W-  246 (309)
T ss_pred             eeeeeccCc-------------CChhhhc--------------CCCCccc--ccch---HHHHHhhhcCc--------e-
Confidence            111100000             1111100              0011111  1122   99999999775        8 


Q ss_pred             cCCcEEEEeecccCCcccccceeEEEEecCCceEEEEecCCCeEEEEcCCceeeecCCCCCeEEEEeCCCCCceE
Q 018594          241 CEGIIVKVMSKALADKGYNKQKGVVRKVIDKYVGEIEMLEKKHVLRVDQDELETVIPQIGGLVRIVNGAYRGSNA  315 (353)
Q Consensus       241 ~~~IvVKIi~K~l~dGkyYk~KgvV~~V~d~~~c~V~l~d~g~~l~vdq~~LETVIP~~G~~V~IV~G~~RG~~g  315 (353)
                          +|+||+++++. + |++||||.+|+|.|++.|+ +|+|++|+|||+|||||||+     |||||+|||..|
T Consensus       247 ----~vk~~sk~l~~-k-~K~K~vv~~vid~y~~~~K-ld~g~~lk~dq~~lEtvip~-----~~vng~yRg~~~  309 (309)
T KOG2837|consen  247 ----VVKVISKSLGE-K-YKQKGVVKKVIDDYTGQIK-LDSGTVLKVDQEHLETVIPQ-----MIVNGAYRGSEA  309 (309)
T ss_pred             ----EEEeehhhhhH-H-hccccHHHHHHHhhhhhee-ccCCceecccHHHHHHHhHH-----HHhhhhhccCCC
Confidence                99999999999 6 9999999999999999999 78999999999999999999     899999999754

>PF10357 Kin17_mid: Domain of Kin17 curved DNA-binding protein; InterPro: IPR019447 This entry represents the conserved central 169 residue region of the Kin17 DNA/RNA-binding proteins Back     alignment and domain information
>KOG4315 consensus G-patch nucleic acid binding protein [General function prediction only] Back     alignment and domain information
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription] Back     alignment and domain information
>PF00467 KOW: KOW motif; InterPro: IPR005824 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif Back     alignment and domain information
>PRK12281 rplX 50S ribosomal protein L24; Reviewed Back     alignment and domain information
>CHL00141 rpl24 ribosomal protein L24; Validated Back     alignment and domain information
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal Back     alignment and domain information
>PRK00004 rplX 50S ribosomal protein L24; Reviewed Back     alignment and domain information
>PRK01191 rpl24p 50S ribosomal protein L24P; Validated Back     alignment and domain information
>TIGR01079 rplX_bact ribosomal protein L24, bacterial/organelle Back     alignment and domain information
>PTZ00194 60S ribosomal protein L26; Provisional Back     alignment and domain information
>PRK05609 nusG transcription antitermination protein NusG; Validated Back     alignment and domain information
>TIGR01080 rplX_A_E ribosomal protein L24p/L26e, archaeal/eukaryotic Back     alignment and domain information
>TIGR00922 nusG transcription termination/antitermination factor NusG Back     alignment and domain information
>PRK08559 nusG transcription antitermination protein NusG; Validated Back     alignment and domain information
>COG0250 NusG Transcription antiterminator [Transcription] Back     alignment and domain information
>PRK04313 30S ribosomal protein S4e; Validated Back     alignment and domain information
>TIGR01955 RfaH transcriptional activator RfaH Back     alignment and domain information
>PLN00036 40S ribosomal protein S4; Provisional Back     alignment and domain information
>PRK09014 rfaH transcriptional activator RfaH; Provisional Back     alignment and domain information
>PTZ00118 40S ribosomal protein S4; Provisional Back     alignment and domain information
>PF11623 DUF3252: Protein of unknown function (DUF3252); InterPro: IPR021659 This family of proteins has no known function Back     alignment and domain information
>COG0198 RplX Ribosomal protein L24 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR01956 NusG_myco NusG family protein Back     alignment and domain information
>COG5164 SPT5 Transcription elongation factor [Transcription] Back     alignment and domain information
>PTZ00223 40S ribosomal protein S4; Provisional Back     alignment and domain information
>COG1471 RPS4A Ribosomal protein S4E [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription] Back     alignment and domain information
>PF15591 Imm17: Immunity protein 17 Back     alignment and domain information
>PF15057 DUF4537: Domain of unknown function (DUF4537) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query353
2v1n_A111 Solution Structure Of The Region 51-160 Of Human Ki 1e-27
2ckk_A127 High Resolution Crystal Structure Of The Human Kin1 1e-22
>pdb|2V1N|A Chain A, Solution Structure Of The Region 51-160 Of Human Kin17 Reveals A Winged Helix Fold Length = 111 Back     alignment and structure 
Iteration: 1

 Score =  120 bits (301), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 54/102 (52%), Positives = 73/102 (71%)
Query: 6   QNPDRIVEGYSEEFEAGFLELMRRSHRFSRIAATVVYNEYIHDRHHVHMNSTRWATLTEF 65
           +NP + ++ +SEEF   FLEL+RR     R+   +VYNEYI  R H+HMN+T+W TLT+F
Sbjct: 10  ENPQQFMDYFSEEFRNDFLELLRRRFGTKRVHNNIVYNEYISHREHIHMNATQWETLTDF 69
Query: 66  VKYLGRTGKCKVEETPKGWFITYIDRDSETLFKEKMKNKRIK 107
            K+LGR G CKV+ETPKGW+I YIDRD ET+ ++    K+ K
Sbjct: 70  TKWLGREGLCKVDETPKGWYIQYIDRDPETIRRQLELEKKKK 111
>pdb|2CKK|A Chain A, High Resolution Crystal Structure Of The Human Kin17 C- Terminal Domain Containing A Kow Motif Kin17 Length = 127 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query353
2v1n_A111 KIN17, protein KIN homolog; nuclear protein, winge 3e-52
2ckk_A127 KIN17; beta barrel, ribosomal protein, ribonucleop 2e-47
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>2v1n_A KIN17, protein KIN homolog; nuclear protein, winged helix motif; NMR {Homo sapiens} Length = 111 Back     alignment and structure
 Score =  168 bits (426), Expect = 3e-52
 Identities = 54/107 (50%), Positives = 75/107 (70%)

Query: 1   MQIFGQNPDRIVEGYSEEFEAGFLELMRRSHRFSRIAATVVYNEYIHDRHHVHMNSTRWA 60
           + +  +NP + ++ +SEEF   FLEL+RR     R+   +VYNEYI  R H+HMN+T+W 
Sbjct: 5   LLLASENPQQFMDYFSEEFRNDFLELLRRRFGTKRVHNNIVYNEYISHREHIHMNATQWE 64

Query: 61  TLTEFVKYLGRTGKCKVEETPKGWFITYIDRDSETLFKEKMKNKRIK 107
           TLT+F K+LGR G CKV+ETPKGW+I YIDRD ET+ ++    K+ K
Sbjct: 65  TLTDFTKWLGREGLCKVDETPKGWYIQYIDRDPETIRRQLELEKKKK 111
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens} Length = 127 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query353
2v1n_A111 KIN17, protein KIN homolog; nuclear protein, winge 100.0
2ckk_A127 KIN17; beta barrel, ribosomal protein, ribonucleop 100.0
1nz9_A58 Transcription antitermination protein NUSG; transc 96.95
2e6z_A59 Transcription elongation factor SPT5; KOW motif, s 96.66
3p8b_B152 Transcription antitermination protein NUSG; transc 95.96
2e70_A71 Transcription elongation factor SPT5; KOW motif, s 95.76
3u5e_Y127 L33, YL33, 60S ribosomal protein L26-A; translatio 94.98
1vq8_T120 50S ribosomal protein L24P; ribosome 50S, protein- 94.8
2ftc_N96 Mitochondrial ribosomal protein L24; mitochondrial 94.75
3j21_U121 50S ribosomal protein L24P; archaea, archaeal, KIN 94.55
3iz5_Y150 60S ribosomal protein L26 (L24P); eukaryotic ribos 94.43
4a17_S135 RPL26, 60S ribosomal protein L21; eukaryotic ribos 94.4
2zkr_t145 60S ribosomal protein L26; protein-RNA complex, 60 94.36
2jvv_A181 Transcription antitermination protein NUSG; transc 94.17
2zjr_R115 50S ribosomal protein L24; ribosome, large ribosom 94.11
2do3_A69 Transcription elongation factor SPT5; KOW motif, s 93.98
3v2d_Y110 50S ribosomal protein L24; ribosome associated inh 93.86
3r8s_U102 50S ribosomal protein L24; protein biosynthesis, R 93.55
2jz2_A66 SSL0352 protein; SH3-like, synechocystis SP. PCC 6 93.13
3kbg_A213 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR2 90.87
2xhc_A352 Transcription antitermination protein NUSG; 2.45A 90.12
2xzm_W260 40S ribosomal protein S4; ribosome, translation; 3 87.68
3bbo_W191 Ribosomal protein L24; large ribosomal subunit, sp 87.32
2qqr_A118 JMJC domain-containing histone demethylation prote 86.89
3fdr_A94 Tudor and KH domain-containing protein; TDRD2, str 86.62
1m1h_A248 Transcription antitermination protein NUSG; transc 86.23
3j20_E243 30S ribosomal protein S4E; archaea, archaeal, KINK 82.63
2diq_A110 Tudor and KH domain-containing protein; tudor doma 81.64
3iz6_D265 40S ribosomal protein S4 (S4E); eukaryotic ribosom 80.99
1ssf_A156 Transformation related protein 53 binding protein 80.27
>2v1n_A KIN17, protein KIN homolog; nuclear protein, winged helix motif; NMR {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1.6e-61  Score=404.27  Aligned_cols=107  Identities=50%  Similarity=0.958  Sum_probs=105.3

Q ss_pred             CcccccCchhhHhhhHHHHHHHHHHHHHhccCCcccccceeeeeecccccceeecccccccHHHHHHHhcccccEEEeec
Q 018594            1 MQIFGQNPDRIVEGYSEEFEAGFLELMRRSHRFSRIAATVVYNEYIHDRHHVHMNSTRWATLTEFVKYLGRTGKCKVEET   80 (353)
Q Consensus         1 m~lf~enp~~~i~~fS~eF~~~Fl~lLr~~~g~krV~aN~vYneyI~dr~HiHMNaT~W~tLt~Fvk~Lgr~G~c~vdet   80 (353)
                      |+|||+||++||++||++|+++||+||||+||+|||+||+||||||+||+|||||||+|+|||+||+||||+|+|+||+|
T Consensus         5 m~l~~en~~k~i~~fS~eF~~~Fl~lLr~~~g~krV~aN~vYnEyI~dk~HiHMNaT~W~tLT~Fvk~Lgr~G~c~V~et   84 (111)
T 2v1n_A            5 LLLASENPQQFMDYFSEEFRNDFLELLRRRFGTKRVHNNIVYNEYISHREHIHMNATQWETLTDFTKWLGREGLCKVDET   84 (111)
T ss_dssp             CCCCCCCGGGCHHHHHHHHHHHHHHHHHHHTSSCEEEHHHHHHHHTTSSCCCCGGGSSCSSHHHHHHHHTTTTSEEEEEE
T ss_pred             HHHHHhCHhhHHHHHHHHHHHHHHHHHHHhcCCcEeehhHHHHHHhcccccccccccccccHHHHHHHhccCCeEEEecC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeEEEeecCChHHHHHHHHHHHHhh
Q 018594           81 PKGWFITYIDRDSETLFKEKMKNKRIK  107 (353)
Q Consensus        81 ekGw~I~yId~~pe~~~r~~~~~k~~~  107 (353)
                      |+||||+|||+|||+++|+++.+|+++
T Consensus        85 ekG~~I~yId~~pe~l~r~~~~~kk~k  111 (111)
T 2v1n_A           85 PKGWYIQYIDRDPETIRRQLELEKKKK  111 (111)
T ss_dssp             TTEEEEEECCSSHHHHHHHHHTGGGTC
T ss_pred             CCceEEEeecCCHHHHHHHHHHHhhcC
Confidence            999999999999999999999999864
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens} Back     alignment and structure
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4 Back     alignment and structure
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D Back     alignment and structure
>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U Back     alignment and structure
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ... Back     alignment and structure
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N Back     alignment and structure
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S Back     alignment and structure
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G Back     alignment and structure
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V Back     alignment and structure
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5 Back     alignment and structure
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ... Back     alignment and structure
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ... Back     alignment and structure
>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A Back     alignment and structure
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum} Back     alignment and structure
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima} Back     alignment and structure
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W Back     alignment and structure
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A* Back     alignment and structure
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure
>1m1h_A Transcription antitermination protein NUSG; transcription termination, RNP motif, immunoglobulin fold, nucleic acid interaction; 1.95A {Aquifex aeolicus} SCOP: b.114.1.1 d.58.42.1 PDB: 1m1g_A 1npp_A 1npr_A Back     alignment and structure
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Back     alignment and structure
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query353
d1nz9a_58 N-utilization substance G protein NusG, C-terminal 97.23
d1nppa258 N-utilization substance G protein NusG, C-terminal 97.07
d1vqot1119 Ribosomal proteins L24 (L24p) {Archaeon Haloarcula 95.35
d2do3a162 Transcription elongation factor SPT5 {Human (Homo 94.05
d2zjrr1110 Ribosomal proteins L24 (L24p) {Deinococcus radiodu 93.77
d2j01y1101 Ribosomal proteins L24 (L24p) {Thermus thermophilu 89.32
d2gycs199 Ribosomal proteins L24 (L24p) {Escherichia coli [T 88.82
d2hqxa190 P100 co-activator, SND1 {Human (Homo sapiens) [Tax 88.58
d2diqa197 Tudor and KH domain-containing protein TDRKH {Huma 84.6
d1u0la166 Probable GTPase EngC (YjeQ), N-terminal domain {Th 84.39
d2do3a162 Transcription elongation factor SPT5 {Human (Homo 82.14
>d1nz9a_ b.34.5.4 (A:) N-utilization substance G protein NusG, C-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: N-utilization substance G protein NusG, C-terminal domain
domain: N-utilization substance G protein NusG, C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.23  E-value=0.00038  Score=50.00  Aligned_cols=50  Identities=20%  Similarity=0.419  Sum_probs=41.8

Q ss_pred             CCCCeEEEEeCCCCCceEEEEeeeCCccEEEEEEeccccCCc--eeeecccccccc
Q 018594          298 QIGGLVRIVNGAYRGSNARLLGVDTDKFCAQVKIEKGVYDGR--VLNAIDYEDICK  351 (353)
Q Consensus       298 ~~G~~V~IV~G~~RG~~g~L~siD~~~~~a~V~l~~g~~~g~--~v~~l~yedicK  351 (353)
                      ++|+.|+|+.|++.|..|++.++|.++..|.|.|+-   -|+  .+ .++|++|-|
T Consensus         6 ~~Gd~V~I~~GpF~g~~g~V~~i~~~k~rv~V~v~i---fGr~t~v-el~~~~ieK   57 (58)
T d1nz9a_           6 REGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTI---FGRETPV-ELDFSQVVK   57 (58)
T ss_dssp             CTTCEEEECSGGGTTCEEEEEEEETTTTEEEEEEES---SSSEEEE-EECGGGEEE
T ss_pred             cCCCEEEEeccCCCCCEEEEEEEcCCCCEEEEEEEe---cCCCceE-eeCHHHEEc
Confidence            789999999999999999999999999888887763   343  34 488888765
>d1nppa2 b.34.5.4 (A:191-248) N-utilization substance G protein NusG, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1vqot1 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d2do3a1 b.34.5.5 (A:462-523) Transcription elongation factor SPT5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2zjrr1 b.34.5.1 (R:4-113) Ribosomal proteins L24 (L24p) {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2j01y1 b.34.5.1 (Y:2-102) Ribosomal proteins L24 (L24p) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2gycs1 b.34.5.1 (S:3-101) Ribosomal proteins L24 (L24p) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u0la1 b.40.4.5 (A:3-68) Probable GTPase EngC (YjeQ), N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2do3a1 b.34.5.5 (A:462-523) Transcription elongation factor SPT5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure