Citrus Sinensis ID: 018647

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350--
MSAKHLNTYYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELADLQRDGDWYAAVEFVVKAGDPKARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQKASRNFAKRQLTWFRNERIYHWLNAARPLENVLNYIITAYHDSTGTLVVPDYLQIRRDSSSSREVSELKSYRTRNRHFISRGDCCNILDWIKRTQGKTCELREPIVV
cccccccccccHHHHHHHHHHHHHHHHHcccccEEEcccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccccccHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEccccHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHccccEEccccccHHHHHHHHHHHcccccccccccc
cccccccccccHHHHHHHHHHHHHHHHHcccccEEEcHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHccHHHHHHHccccHHHHHHHHHHHEHccccHHHHHccccHHHHccccccccccccccccccccccccccccccEEEEEEcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccccHHHHHHcHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHHHcccEEccccccccHccccHHHHHHHHHHHccccEEccccccHHHHHHHHHHccccccccccEEc
MSAKHLNTYYSVGKFFEDARHATKDVLkkgrvpivtggtgLYLRWFIygkpdvpkaspEIIAEVNSELADLQRDGDWYAAVEFVVKAgdpkarslaANDWYRLRRSLEIikstgsppsafqipydsfrehsdssetdhsyernssagasdtnpkdldydfmcFFLSSHRLDLYRSidlrcedmlpgsdgILSEAAWLldegllpnsnsatrAIGYRQAMEYLLRCrqqggtsstGEFYAFLAEFQKASRNFAKRQLTWFRNERIYHWLNAARPLENVLNYIITAyhdstgtlvvpdylqirrdssssrevsELKSyrtrnrhfisrgdccNILDWIKrtqgktcelrepivv
MSAKHLNTYYSVGKFFEDARHATkdvlkkgrvpivtggtgLYLRWFIYGKPDVPKASPEIIAEVNSELADLQRDGDWYAAVEFVvkagdpkarslaandwYRLRRSLeiikstgsppsaFQIPYDSFREHSDSSEtdhsyernssagasdtnpkdLDYDFMCFFLSSHRLDLYRSIDLRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQKASRNFAKRQLTWFRNERIYHWLNAARPLENVLNYIITAYHDSTGTLVVPDYLQirrdssssrevselksyrtrnrhfisrgdccniLDWIKrtqgktcelrepivv
MSAKHLNTYYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELADLQRDGDWYAAVEFVVKAGDPKARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQKASRNFAKRQLTWFRNERIYHWLNAARPLENVLNYIITAYHDSTGTLVVPDYLQIrrdssssrEVSELKSYRTRNRHFISRGDCCNILDWIKRTQGKTCELREPIVV
*****LNTYYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELADLQRDGDWYAAVEFVVKAGDPKARSLAANDWYRLRRSLEII*********************************************LDYDFMCFFLSSHRLDLYRSIDLRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQKASRNFAKRQLTWFRNERIYHWLNAARPLENVLNYIITAYHDSTGTLVVPDYLQI*****************TRNRHFISRGDCCNILDWIKRTQGKTC********
MSAKHLNTYYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELADLQRDGDWYAAVEFVVKAGDPKARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYDS*REHSDSSETDHSYERNS*******NPKDLDYDFMCFFLSSHRLDLYRSIDLRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQKASRNFAKRQLTWFRNERIYHWLNAARPLENVLNYIITAYHD***************************SYRTRNRHFISRGDCCNILDWIKRTQGKTCELREPIVV
MSAKHLNTYYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELADLQRDGDWYAAVEFVVKAGDPKARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSF***********************TNPKDLDYDFMCFFLSSHRLDLYRSIDLRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQKASRNFAKRQLTWFRNERIYHWLNAARPLENVLNYIITAYHDSTGTLVVPDYLQIRR*************YRTRNRHFISRGDCCNILDWIKRTQGKTCELREPIVV
MSAKHLNTYYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELADLQRDGDWYAAVEFVVKAGDPKARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPY*****************************KDLDYDFMCFFLSSHRLDLYRSIDLRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQKASRNFAKRQLTWFRNERIYHWLNAARPLENVLNYIITAYHDSTGTLVVPDYLQIRRDSSSSREVSELKSYRTRNRHFISRGDCCNILDWIKRTQGKTCELREPIVV
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MSAKHLNTYYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELADLQRDGDWYAAVEFVVKAGDPKARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQKASRNFAKRQLTWFRNERIYHWLNAARPLENVLNYIITAYHDSTGTLVVPDYLQIRRDSSSSREVSELKSYRTRNRHFISRGDCCNILDWIKRTQGKTCELREPIVV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query352 2.2.26 [Sep-21-2011]
Q9C5J6463 tRNA dimethylallyltransfe yes no 0.965 0.734 0.634 1e-124
A1U4C6347 tRNA dimethylallyltransfe yes no 0.684 0.694 0.325 2e-25
Q6MBT2344 tRNA dimethylallyltransfe yes no 0.667 0.683 0.305 8e-25
B5EGD5306 tRNA dimethylallyltransfe yes no 0.642 0.738 0.301 2e-23
Q820E1342 tRNA dimethylallyltransfe yes no 0.639 0.657 0.299 1e-20
A1AT90309 tRNA dimethylallyltransfe yes no 0.661 0.754 0.282 1e-20
B1H0C6299 tRNA dimethylallyltransfe yes no 0.568 0.668 0.294 7e-20
Q74BP1311 tRNA dimethylallyltransfe yes no 0.610 0.691 0.307 3e-19
A5GEV6310 tRNA dimethylallyltransfe yes no 0.650 0.738 0.284 3e-19
Q9Z6Z6342 tRNA dimethylallyltransfe yes no 0.647 0.666 0.282 3e-19
>sp|Q9C5J6|IPT9_ARATH tRNA dimethylallyltransferase 9 OS=Arabidopsis thaliana GN=IPT9 PE=2 SV=1 Back     alignment and function desciption
 Score =  446 bits (1147), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 217/342 (63%), Positives = 263/342 (76%), Gaps = 2/342 (0%)

Query: 5   HLNTYYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEV 64
           H +  YSVG+F++D R ATKD+L +GRVPIVTGGTGLYLRWF+YGKPDVPK SPE+IAE 
Sbjct: 114 HPSQDYSVGQFYDDGRQATKDILNRGRVPIVTGGTGLYLRWFMYGKPDVPKPSPEVIAEA 173

Query: 65  NSELADLQRDGDWYAAVEFVVKAGDPKARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPY 124
           +  L   Q + +W AAVE VV AGDPKA SL  NDWYRLRRSLEI+KSTGSPPS+F+IPY
Sbjct: 174 HDMLVGFQTEYNWDAAVELVVNAGDPKASSLPRNDWYRLRRSLEILKSTGSPPSSFRIPY 233

Query: 125 DSFREHSDSSETDHSYERNSSAGASDTNPK-DLDYDFMCFFLSSHRLDLYRSIDLRCEDM 183
           DSFR +  + + D   E  SSA  S  N + DLDYDF+CFFLSS R+ LYRSID RCEDM
Sbjct: 234 DSFRVNLVAPDADDFLEDGSSADISIQNIETDLDYDFLCFFLSSPRVALYRSIDFRCEDM 293

Query: 184 LPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAE 243
           L G +G+LSEA WLLD GLLPNSN ATRAIGYRQAMEYLL+CR+  G SS  EFYAFL +
Sbjct: 294 LSGPNGVLSEARWLLDLGLLPNSNPATRAIGYRQAMEYLLQCRRYEGESSPREFYAFLNK 353

Query: 244 FQKASRNFAKRQLTWFRNERIYHWLNAARPLENVLNYIITAYHDSTGTLVVPDYLQIRRD 303
           FQ ASRNFAKRQ+TWFR E +YHWLNA++PL+++L  I  AY      + +P+ L++ +D
Sbjct: 354 FQTASRNFAKRQMTWFRCEPMYHWLNASKPLDSILQCIYDAYESEAEMVEIPESLRMSKD 413

Query: 304 SSSSREVSELKSYRTRNRHFISRGDCCNILDWIKRTQGKTCE 345
              SRE SELK YR++NRHF+ R DC ++L+WI R++G   E
Sbjct: 414 VRDSREASELKGYRSKNRHFVRREDCSSVLEWI-RSEGCKSE 454
Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A). Involved in the cis-type cytokinin biosynthesis.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 7EC: 5
>sp|A1U4C6|MIAA_MARAV tRNA dimethylallyltransferase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=miaA PE=3 SV=1 Back     alignment and function description
>sp|Q6MBT2|MIAA_PARUW tRNA dimethylallyltransferase OS=Protochlamydia amoebophila (strain UWE25) GN=miaA PE=3 SV=1 Back     alignment and function description
>sp|B5EGD5|MIAA1_GEOBB tRNA dimethylallyltransferase 1 OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=miaA1 PE=3 SV=1 Back     alignment and function description
>sp|Q820E1|MIAA_CHLCV tRNA dimethylallyltransferase OS=Chlamydophila caviae (strain GPIC) GN=miaA PE=3 SV=1 Back     alignment and function description
>sp|A1AT90|MIAA1_PELPD tRNA dimethylallyltransferase 1 OS=Pelobacter propionicus (strain DSM 2379) GN=miaA1 PE=3 SV=1 Back     alignment and function description
>sp|B1H0C6|MIAA_UNCTG tRNA dimethylallyltransferase OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=miaA PE=3 SV=1 Back     alignment and function description
>sp|Q74BP1|MIAA_GEOSL tRNA dimethylallyltransferase OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GN=miaA PE=3 SV=1 Back     alignment and function description
>sp|A5GEV6|MIAA2_GEOUR tRNA dimethylallyltransferase 2 OS=Geobacter uraniireducens (strain Rf4) GN=miaA2 PE=3 SV=1 Back     alignment and function description
>sp|Q9Z6Z6|MIAA_CHLPN tRNA dimethylallyltransferase OS=Chlamydia pneumoniae GN=miaA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query352
224061312443 tRNA isopentenyltransferase [Populus tri 0.948 0.753 0.707 1e-144
255566559446 ATP binding protein, putative [Ricinus c 0.965 0.762 0.720 1e-144
302142919432 unnamed protein product [Vitis vinifera] 0.948 0.773 0.735 1e-143
225461620447 PREDICTED: tRNA dimethylallyltransferase 0.948 0.747 0.735 1e-143
449438885 482 PREDICTED: tRNA dimethylallyltransferase 0.937 0.684 0.688 1e-135
356549681448 PREDICTED: tRNA dimethylallyltransferase 0.954 0.75 0.684 1e-134
297812191 463 ATIPT9 [Arabidopsis lyrata subsp. lyrata 0.965 0.734 0.646 1e-125
30687613 463 tRNA dimethylallyltransferase 9 [Arabido 0.965 0.734 0.634 1e-123
21554010 463 IPP transferase-like protein [Arabidopsi 0.965 0.734 0.631 1e-122
334187783 469 tRNA dimethylallyltransferase 9 [Arabido 0.965 0.724 0.623 1e-121
>gi|224061312|ref|XP_002300421.1| tRNA isopentenyltransferase [Populus trichocarpa] gi|222847679|gb|EEE85226.1| tRNA isopentenyltransferase [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 242/342 (70%), Positives = 292/342 (85%), Gaps = 8/342 (2%)

Query: 5   HLNTYYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEV 64
           H +  YSVG+F+EDAR AT+D+LK GRVPIVTGGTGLYLRWFIYGKPDVPKASPEI +EV
Sbjct: 109 HPSEDYSVGQFYEDARQATQDILKNGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIASEV 168

Query: 65  NSELADLQRDGDWYAAVEFVVKAGDPKARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPY 124
            SELA+L+R+ DW AAV+ VVKAGD +A+ LAANDWYRLRRSLEIIK++GSPPSAFQ+PY
Sbjct: 169 YSELAELERNKDWDAAVQLVVKAGDSQAQFLAANDWYRLRRSLEIIKTSGSPPSAFQVPY 228

Query: 125 DSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLRCEDML 184
            SF++  D+  TD S + NSS         DLDY+F+CFFLSS RLDLY+SID RCEDM+
Sbjct: 229 KSFKDQFDTRLTDSSLDVNSSG--------DLDYEFICFFLSSPRLDLYKSIDYRCEDMV 280

Query: 185 PGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEF 244
            GS+GIL+EA WLLDEGLLPNSNSATRAIGYRQAMEYLLRCR+ GG+SS G+FYAFL+EF
Sbjct: 281 AGSNGILTEAKWLLDEGLLPNSNSATRAIGYRQAMEYLLRCREDGGSSSAGDFYAFLSEF 340

Query: 245 QKASRNFAKRQLTWFRNERIYHWLNAARPLENVLNYIITAYHDSTGTLVVPDYLQIRRDS 304
           QKASRNFAKRQ+TWFRNE IYHWL+A++PLE VLN++  AYHD TG+LVVP+ L++++D 
Sbjct: 341 QKASRNFAKRQMTWFRNEHIYHWLDASKPLEMVLNFVYDAYHDQTGSLVVPESLRMKKDM 400

Query: 305 SSSREVSELKSYRTRNRHFISRGDCCNILDWIKRTQGKTCEL 346
           +S REV +LK+YRT+NRHF+SR DC +ILDWI+ TQG+   +
Sbjct: 401 TSRREVLQLKAYRTKNRHFVSRNDCSDILDWIRTTQGEAVSV 442

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255566559|ref|XP_002524264.1| ATP binding protein, putative [Ricinus communis] gi|223536455|gb|EEF38103.1| ATP binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|302142919|emb|CBI20214.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225461620|ref|XP_002283012.1| PREDICTED: tRNA dimethylallyltransferase 9 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449438885|ref|XP_004137218.1| PREDICTED: tRNA dimethylallyltransferase 9-like [Cucumis sativus] gi|449483192|ref|XP_004156518.1| PREDICTED: tRNA dimethylallyltransferase 9-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356549681|ref|XP_003543220.1| PREDICTED: tRNA dimethylallyltransferase 9-like [Glycine max] Back     alignment and taxonomy information
>gi|297812191|ref|XP_002873979.1| ATIPT9 [Arabidopsis lyrata subsp. lyrata] gi|297319816|gb|EFH50238.1| ATIPT9 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30687613|ref|NP_851043.1| tRNA dimethylallyltransferase 9 [Arabidopsis thaliana] gi|75308785|sp|Q9C5J6.1|IPT9_ARATH RecName: Full=tRNA dimethylallyltransferase 9; AltName: Full=Isopentenyl-diphosphate: tRNA isopentenyltransferase 9; Short=AtIPT9; Short=IPP transferase 9; Short=IPPT 9 gi|13430592|gb|AAK25918.1|AF360208_1 putative IPP transferase [Arabidopsis thaliana] gi|14532864|gb|AAK64114.1| putative IPP transferase [Arabidopsis thaliana] gi|332005399|gb|AED92782.1| tRNA dimethylallyltransferase 9 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|21554010|gb|AAM63091.1| IPP transferase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|334187783|ref|NP_001190344.1| tRNA dimethylallyltransferase 9 [Arabidopsis thaliana] gi|332005401|gb|AED92784.1| tRNA dimethylallyltransferase 9 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query352
TIGR_CMR|GSU_2000311 GSU_2000 "tRNA delta(2)-isopen 0.289 0.327 0.359 1.5e-17
DICTYBASE|DDB_G0274017413 iptC-2 "putative isopentenyltr 0.670 0.571 0.285 4e-17
DICTYBASE|DDB_G0273039413 iptC-1 "putative isopentenyltr 0.670 0.571 0.285 4e-17
TIGR_CMR|CHY_1394311 CHY_1394 "tRNA delta(2)-isopen 0.306 0.347 0.324 1.9e-16
TIGR_CMR|ECH_0588303 ECH_0588 "tRNA delta(2)-isopen 0.284 0.330 0.314 3.4e-12
TIGR_CMR|CPS_0324316 CPS_0324 "tRNA delta(2)-isopen 0.289 0.322 0.292 2.2e-10
TIGR_CMR|APH_0431312 APH_0431 "tRNA delta(2)-isopen 0.286 0.323 0.273 5.1e-10
TIGR_CMR|NSE_0570305 NSE_0570 "tRNA delta(2)-isopen 0.315 0.363 0.268 1.1e-08
TIGR_CMR|CBU_1082311 CBU_1082 "tRNA delta(2)-isopen 0.303 0.344 0.336 1.9e-08
TIGR_CMR|DET_0741325 DET_0741 "tRNA delta(2)-isopen 0.286 0.310 0.286 2.7e-08
TIGR_CMR|GSU_2000 GSU_2000 "tRNA delta(2)-isopentenylpyrophosphate transferase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
 Score = 144 (55.7 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
 Identities = 41/114 (35%), Positives = 58/114 (50%)

Query:   155 DLDYDFMCFFLSSHRLDLYRSIDLRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIG 214
             D  YD +   +S  R DLYR I+ R   M   ++G + E + LL+ G  P+   A  AIG
Sbjct:   192 DEPYDCLKLGISVERDDLYRRINERVNRMF--AEGFVEEVSGLLNAGYSPDLK-AMGAIG 248

Query:   215 YRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQKASRNFAKRQLTWFRNERIYHWL 268
             Y++   YL       GT S  E    +   Q+ +R +AKRQLTWFR +    W+
Sbjct:   249 YKEVCAYL------AGTCSLDEARELV---QRNTRRYAKRQLTWFRKDPAIKWV 293
GO:0006400 "tRNA modification" evidence=ISS
DICTYBASE|DDB_G0274017 iptC-2 "putative isopentenyltransferase C" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0273039 iptC-1 "putative isopentenyltransferase C" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1394 CHY_1394 "tRNA delta(2)-isopentenylpyrophosphate transferase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|ECH_0588 ECH_0588 "tRNA delta(2)-isopentenylpyrophosphate transferase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_0324 CPS_0324 "tRNA delta(2)-isopentenylpyrophosphate transferase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|APH_0431 APH_0431 "tRNA delta(2)-isopentenylpyrophosphate transferase" [Anaplasma phagocytophilum HZ (taxid:212042)] Back     alignment and assigned GO terms
TIGR_CMR|NSE_0570 NSE_0570 "tRNA delta(2)-isopentenylpyrophosphate transferase" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1082 CBU_1082 "tRNA delta(2)-isopentenylpyrophosphate transferase" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0741 DET_0741 "tRNA delta(2)-isopentenylpyrophosphate transferase" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9C5J6IPT9_ARATH2, ., 5, ., 1, ., 7, 50.63450.96590.7343yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.5.1.750.914
3rd Layer2.5.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00027788001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (447 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00011128001
SubName- Full=Chromosome undetermined scaffold_2178, whole genome shotgun sequence; Flags- Frag [...] (286 aa)
     •• 0.834
GSVIVG00014548001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (459 aa)
•  •  • 0.811
GSVIVG00036866001
SubName- Full=Chromosome chr4 scaffold_83, whole genome shotgun sequence; (471 aa)
•  •  • 0.761
GSVIVG00019724001
RecName- Full=Pseudouridylate synthase; EC=5.4.99.-; (304 aa)
•  •  • 0.698
GSVIVG00022341001
SubName- Full=Chromosome chr14 scaffold_26, whole genome shotgun sequence; (392 aa)
•  •  • 0.653
GSVIVG00015180001
RecName- Full=Queuine tRNA-ribosyltransferase; EC=2.4.2.29;; Exchanges the guanine residue with [...] (367 aa)
      • 0.605
GSVIVG00003824001
SubName- Full=Chromosome chr8 scaffold_150, whole genome shotgun sequence; (946 aa)
  ••  • 0.561
GSVIVG00022457001
SubName- Full=Chromosome chr14 scaffold_26, whole genome shotgun sequence; (313 aa)
•     • 0.518
GSVIVG00035363001
SubName- Full=Chromosome undetermined scaffold_77, whole genome shotgun sequence; (238 aa)
   •  • 0.516
GSVIVG00007818001
SubName- Full=Chromosome chr18 scaffold_1089, whole genome shotgun sequence; (371 aa)
•     • 0.491

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query352
PLN02840421 PLN02840, PLN02840, tRNA dimethylallyltransferase 0.0
PRK00091307 PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosp 1e-53
COG0324308 COG0324, MiaA, tRNA delta(2)-isopentenylpyrophosph 1e-49
pfam01715253 pfam01715, IPPT, IPP transferase 3e-41
TIGR00174287 TIGR00174, miaA, tRNA dimethylallyltransferase 7e-37
PRK14729300 PRK14729, miaA, tRNA delta(2)-isopentenylpyrophosp 4e-17
>gnl|CDD|215451 PLN02840, PLN02840, tRNA dimethylallyltransferase Back     alignment and domain information 
 Score =  579 bits (1493), Expect = 0.0
 Identities = 235/333 (70%), Positives = 278/333 (83%), Gaps = 6/333 (1%)

Query: 10  YSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELA 69
           YSVG FF+DAR AT+D+L +GRVPIV GGTGLYLRW+IYGKPDVPK+SPEI +EV SEL 
Sbjct: 90  YSVGAFFDDARRATQDILNRGRVPIVAGGTGLYLRWYIYGKPDVPKSSPEITSEVWSELV 149

Query: 70  DLQRDGDWYAAVEFVVKAGDPKARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFRE 129
           D Q++GDW AAVE VV AGDPKARSL  NDWYRLRRSLEIIKS+GSPPSAF +PYDSFRE
Sbjct: 150 DFQKNGDWDAAVELVVNAGDPKARSLPRNDWYRLRRSLEIIKSSGSPPSAFSLPYDSFRE 209

Query: 130 HSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLRCEDMLPGSDG 189
              + +TD S E  SSA        +LDYDF+CFFLSS RLDLYRSIDLRCE+ML G++G
Sbjct: 210 QLVTEDTDSSLEDGSSA------ETELDYDFLCFFLSSPRLDLYRSIDLRCEEMLAGTNG 263

Query: 190 ILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQKASR 249
           ILSEA+WLLD GLLPNSNSATRAIGYRQAMEYLL+CRQ GG SS  EF AFL++FQ ASR
Sbjct: 264 ILSEASWLLDLGLLPNSNSATRAIGYRQAMEYLLQCRQNGGESSPQEFLAFLSKFQTASR 323

Query: 250 NFAKRQLTWFRNERIYHWLNAARPLENVLNYIITAYHDSTGTLVVPDYLQIRRDSSSSRE 309
           NFAKRQ+TWFRNE IYHWL+A++PLE +L +I  AYH  T  +VVP+ L+++++ S SRE
Sbjct: 324 NFAKRQMTWFRNEPIYHWLDASQPLEKILQFIYDAYHSRTARVVVPESLRMKKEVSCSRE 383

Query: 310 VSELKSYRTRNRHFISRGDCCNILDWIKRTQGK 342
            SELK+YR++NRHF+SR DC ++L+WI+RTQ K
Sbjct: 384 SSELKTYRSKNRHFVSREDCSHVLEWIRRTQCK 416

Length = 421
>gnl|CDD|234626 PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed Back     alignment and domain information
>gnl|CDD|223401 COG0324, MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|216659 pfam01715, IPPT, IPP transferase Back     alignment and domain information
>gnl|CDD|213512 TIGR00174, miaA, tRNA dimethylallyltransferase Back     alignment and domain information
>gnl|CDD|173191 PRK14729, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 352
PLN02840421 tRNA dimethylallyltransferase 100.0
PF01715253 IPPT: IPP transferase; InterPro: IPR002627 tRNA is 100.0
PRK14729300 miaA tRNA delta(2)-isopentenylpyrophosphate transf 100.0
TIGR00174287 miaA tRNA isopentenyltransferase (miaA). Catalyzes 100.0
COG0324308 MiaA tRNA delta(2)-isopentenylpyrophosphate transf 100.0
PRK00091307 miaA tRNA delta(2)-isopentenylpyrophosphate transf 100.0
PLN02748468 tRNA dimethylallyltransferase 100.0
PLN02165334 adenylate isopentenyltransferase 100.0
KOG1384348 consensus tRNA delta(2)-isopentenylpyrophosphate t 100.0
PF01745233 IPT: Isopentenyl transferase; InterPro: IPR002648 96.2
COG2069403 CdhD CO dehydrogenase/acetyl-CoA synthase delta su 84.14
>PLN02840 tRNA dimethylallyltransferase Back     alignment and domain information 
Probab=100.00  E-value=1.6e-90  Score=691.42  Aligned_cols=339  Identities=69%  Similarity=1.190  Sum_probs=299.1

Q ss_pred             CCccCCCCccCHHHHHHHHHHHHHHHHhcCCCeEEEcCChhHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhhCCChHHH
Q 018647            1 MSAKHLNTYYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELADLQRDGDWYAA   80 (352)
Q Consensus         1 ~~~~dp~e~ysv~~F~~~A~~~i~~I~~rgkvPIvVGGTglYl~aLl~G~~~~p~~~~eir~~~~~~l~~l~~~~~~~~~   80 (352)
                      +|+++|+++|||++|+++|.++|++|+++|++|||||||||||+||++|++.+|+++++++++++++++++...++|+++
T Consensus        81 idil~p~e~ySv~~F~~~A~~~I~~i~~rgkiPIvVGGTGlYl~aLl~G~~~~p~~~~~~r~~l~~~l~~~~~~~g~~~l  160 (421)
T PLN02840         81 IDILHPSDDYSVGAFFDDARRATQDILNRGRVPIVAGGTGLYLRWYIYGKPDVPKSSPEITSEVWSELVDFQKNGDWDAA  160 (421)
T ss_pred             EeecCCCCceeHHHHHHHHHHHHHHHHhcCCCEEEEcCccHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhccccCHHHH
Confidence            58999999999999999999999999999999999999999999999999989999999999998888876444678877


Q ss_pred             HHHHHHhCCcccccCCCCCHHHHHHHHHHHHHhCCCCCCccCCCccccccCCCCccccccccccCCCCCCCCCCCCCCce
Q 018647           81 VEFVVKAGDPKARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDF  160 (352)
Q Consensus        81 l~~lL~~~DP~A~~ih~ND~~Rl~RALEI~~~TG~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yd~  160 (352)
                      +..+++.+||.|++|||||++||+|||||++.||+|+|+|+.++++|+++.....++....+...      .....+|++
T Consensus       161 ~~~Ll~~~DP~A~~i~pnD~~Ri~RALEV~~~TG~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~y~~  234 (421)
T PLN02840        161 VELVVNAGDPKARSLPRNDWYRLRRSLEIIKSSGSPPSAFSLPYDSFREQLVTEDTDSSLEDGSS------AETELDYDF  234 (421)
T ss_pred             HHHHHhccCcHHHhcCCCcHHHHHHHHHHHHHHCCCHHHhhccccchhhcccccccccccccccc------ccCCCCCCe
Confidence            77788999997789999999999999999999999999986444444444221111110000000      001346999


Q ss_pred             EEEEEeCCHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHcCCCCCCccccccccHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 018647          161 MCFFLSSHRLDLYRSIDLRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAF  240 (352)
Q Consensus       161 ~~~~L~~~R~~L~~rI~~Rvd~Ml~~~~GLl~Ev~~L~~~g~~~~~~~a~~aIGYkE~~~yL~~~~~~~g~~s~~e~~~~  240 (352)
                      ++|||.+||++||+||+.||++||++++||++||++|++.|+.++..+++|||||||+++||..|+..+|++|++++.+|
T Consensus       235 ~~i~L~~dR~~Ly~RI~~Rvd~Ml~~~~GLleEV~~Ll~~g~~~~~~~a~~aIGYkE~~~yL~~~~~~~G~~s~ee~~~~  314 (421)
T PLN02840        235 LCFFLSSPRLDLYRSIDLRCEEMLAGTNGILSEASWLLDLGLLPNSNSATRAIGYRQAMEYLLQCRQNGGESSPQEFLAF  314 (421)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHcCCCccccchHHHhcHHHHHHHHHhhcccCCCCCHHHHHHH
Confidence            99999999999999999999999997779999999999999877645899999999999999988888899999999889


Q ss_pred             HHHHHHHHHHHHhHHHHHhcCCCCceeecCCCCHHHHHHHHHHHhhcCCCccccCCccccccccCChHHHhhhhhhcccc
Q 018647          241 LAEFQKASRNFAKRQLTWFRNERIYHWLNAARPLENVLNYIITAYHDSTGTLVVPDYLQIRRDSSSSREVSELKSYRTRN  320 (352)
Q Consensus       241 le~i~~~TRqyAKRQ~TWfR~~~~~~Wid~~~~~e~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~y~~~~  320 (352)
                      ++.|+++||||||||+||||+++.++|+|++.+.++++++|.+.|++++++++||++++||+|++|++|.++||+||++|
T Consensus       315 ~e~i~~~TRqYAKRQ~TWFR~~~~~~w~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (421)
T PLN02840        315 LSKFQTASRNFAKRQMTWFRNEPIYHWLDASQPLEKILQFIYDAYHSRTARVVVPESLRMKKEVSCSRESSELKTYRSKN  394 (421)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCCeEecCCCCHHHHHHHHHHHHhcCCCCccCchhhhhhhhhhhHHHHHHHhhhhccc
Confidence            99999999999999999999999999999876788999999999999999999999999999999999999999999999


Q ss_pred             ccccCcccchHHHHHHHhhhccccc
Q 018647          321 RHFISRGDCCNILDWIKRTQGKTCE  345 (352)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~  345 (352)
                      |||+++++|++||+|||+||+++..
T Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~  419 (421)
T PLN02840        395 RHFVSREDCSHVLEWIRRTQCKASA  419 (421)
T ss_pred             ceecchhhhHHHHHHHHHhccCccc
Confidence            9999999999999999999999753

>PF01715 IPPT: IPP transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2 Back     alignment and domain information
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional Back     alignment and domain information
>TIGR00174 miaA tRNA isopentenyltransferase (miaA) Back     alignment and domain information
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed Back     alignment and domain information
>PLN02748 tRNA dimethylallyltransferase Back     alignment and domain information
>PLN02165 adenylate isopentenyltransferase Back     alignment and domain information
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [] Back     alignment and domain information
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query352
3foz_A316 Structure Of E. Coli Isopentenyl-Trna Transferase I 2e-15
2zm5_A316 Crystal Structure Of Trna Modification Enzyme Miaa 6e-15
2qgn_A322 Crystal Structure Of Trna Isopentenylpyrophosphate 3e-14
3d3q_A340 Crystal Structure Of Trna Delta(2)-Isopentenylpyrop 2e-13
3crm_A323 Structure Of Trna Dimethylallyltransferase: Rna Mod 8e-12
3eph_A409 Crystallographic Snapshots Of Eukaryotic Dimethylal 6e-10
>pdb|3FOZ|A Chain A, Structure Of E. Coli Isopentenyl-Trna Transferase In Complex With E. Coli Trna(Phe) Length = 316 Back     alignment and structure 
Iteration: 1

 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 112/265 (42%), Gaps = 44/265 (16%)
Query: 10  YSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELA 69
           YS   F  DA     D+   GR+P++ GGT LY +  + G   +P A PE+ A +  + A
Sbjct: 79  YSAADFRRDALAEMADITAAGRIPLLVGGTMLYFKALLEGLSPLPSADPEVRARIEQQAA 138
Query: 70  DLQRDGDWYAAVEFVVKAGDPKARS-LAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFR 128
           +       + ++   ++  DP A + +  ND  RL R+LE+          F I   +  
Sbjct: 139 E-----QGWESLHRQLQEVDPVAAARIHPNDPQRLSRALEV----------FFISGKTLT 183
Query: 129 EHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLSSHRLDLYRSIDLRCEDMLPGSD 188
           E + +S     Y+ +  A A                  + R  L++ I+ R   ML  + 
Sbjct: 184 ELTQTSGDALPYQVHQFAIA-----------------PASRELLHQRIEQRFHQML--AS 224
Query: 189 GILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQKAS 248
           G  +E   L   G L     + R +GYRQ   YL     +G  S     Y  +     A+
Sbjct: 225 GFEAEVRALFARGDLHTDLPSIRCVGYRQMWSYL-----EGEISYDEMVYRGVC----AT 275
Query: 249 RNFAKRQLTWFRNERIYHWLNAARP 273
           R  AKRQ+TW R     HWL++ +P
Sbjct: 276 RQLAKRQITWLRGWEGVHWLDSEKP 300
>pdb|2ZM5|A Chain A, Crystal Structure Of Trna Modification Enzyme Miaa In The Complex With Trna(Phe) Length = 316 Back     alignment and structure
>pdb|2QGN|A Chain A, Crystal Structure Of Trna Isopentenylpyrophosphate Transferase (Bh2366) From Bacillus Halodurans, Northeast Structural Genomics Consortium Target Bhr41. Length = 322 Back     alignment and structure
>pdb|3D3Q|A Chain A, Crystal Structure Of Trna Delta(2)-Isopentenylpyrophosphate Transferase (Se0981) From Staphylococcus Epidermidis. Northeast Structural Genomics Consortium Target Ser100 Length = 340 Back     alignment and structure
>pdb|3CRM|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna Modification Through A Channel Length = 323 Back     alignment and structure
>pdb|3EPH|A Chain A, Crystallographic Snapshots Of Eukaryotic Dimethylallyltransferase Acting On Trna: Insight Into Trna Recognition And Reaction Mechanism Length = 409 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query352
3crm_A323 TRNA delta(2)-isopentenylpyrophosphate transferase 1e-54
3foz_A316 TRNA delta(2)-isopentenylpyrophosphate transferas; 1e-51
3d3q_A340 TRNA delta(2)-isopentenylpyrophosphate transferase 1e-49
3exa_A322 TRNA delta(2)-isopentenylpyrophosphate transferase 6e-47
3eph_A409 TRNA isopentenyltransferase; transferase, alternat 2e-46
3a8t_A339 Adenylate isopentenyltransferase; rossmann fold pr 2e-20
3a8t_A339 Adenylate isopentenyltransferase; rossmann fold pr 1e-09
2ze6_A253 Isopentenyl transferase; crown GALL tumor, cytokin 3e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A Length = 323 Back     alignment and structure
 Score =  181 bits (461), Expect = 1e-54
 Identities = 75/284 (26%), Positives = 110/284 (38%), Gaps = 47/284 (16%)

Query: 10  YSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPKASPEIIAEVNSELA 69
           YS  +F  DA  A      +GR+P++ GGT LY +  + G  D+P A PE+ A + +E  
Sbjct: 74  YSAAEFRADALAAMAKATARGRIPLLVGGTMLYYKALLEGLADMPGADPEVRAAIEAEAQ 133

Query: 70  DLQRDG-----DWYAAVEFVVKAGDPK-ARSLAANDWYRLRRSLEIIKSTGSPPSAFQIP 123
               +G        A V       DP+ A  +  ND  RL R+LE+ +  G   S  +  
Sbjct: 134 ---AEGWEALHRQLAEV-------DPESAARIHPNDPQRLMRALEVYRLGGVSMSDLR-- 181

Query: 124 YDSFREHSDSSETDHSYERNSSAGASDTNPKDLDYDFMCFFLS-SHRLDLYRSIDLRCED 182
                            +    A    +    L Y      ++   R  L+  I  R   
Sbjct: 182 ---------------RRQSAEKADFDASGRNQLPYTVAQLAIAPEQRQVLHARIAQRFRQ 226

Query: 183 MLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLA 242
           ML    G ++E   L     L     + RA+GYRQ  +YL      G  S    +     
Sbjct: 227 ML--EQGFIAEVEALHARSDLHAGLPSIRAVGYRQVWDYL-----DGKLS----YAEMTE 275

Query: 243 EFQKASRNFAKRQLTWFRNERIYHWLNAARP--LENVLNYIITA 284
               A+R  AKRQ TW R+    HW+++     L   L Y+ T 
Sbjct: 276 RGIIATRQLAKRQFTWLRSWSHLHWMDSLAGDNLPRALRYLKTV 319
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A Length = 316 Back     alignment and structure
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} Length = 340 Back     alignment and structure
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A Length = 322 Back     alignment and structure
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* Length = 409 Back     alignment and structure
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} Length = 339 Back     alignment and structure
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} Length = 339 Back     alignment and structure
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A Length = 253 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query352
3exa_A322 TRNA delta(2)-isopentenylpyrophosphate transferase 100.0
3foz_A316 TRNA delta(2)-isopentenylpyrophosphate transferas; 100.0
3crm_A323 TRNA delta(2)-isopentenylpyrophosphate transferase 100.0
3eph_A409 TRNA isopentenyltransferase; transferase, alternat 100.0
3d3q_A340 TRNA delta(2)-isopentenylpyrophosphate transferase 100.0
3a8t_A339 Adenylate isopentenyltransferase; rossmann fold pr 100.0
2ze6_A253 Isopentenyl transferase; crown GALL tumor, cytokin 99.62
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A Back     alignment and structure
Probab=100.00  E-value=1.4e-64  Score=489.60  Aligned_cols=241  Identities=28%  Similarity=0.452  Sum_probs=207.8

Q ss_pred             CCccCCCCccCHHHHHHHHHHHHHHHHhcCCCeEEEcCChhHHHHHHcCCCCCCC-CCHHHHHHHHHHHHHHhhCCChHH
Q 018647            1 MSAKHLNTYYSVGKFFEDARHATKDVLKKGRVPIVTGGTGLYLRWFIYGKPDVPK-ASPEIIAEVNSELADLQRDGDWYA   79 (352)
Q Consensus         1 ~~~~dp~e~ysv~~F~~~A~~~i~~I~~rgkvPIvVGGTglYl~aLl~G~~~~p~-~~~eir~~~~~~l~~l~~~~~~~~   79 (352)
                      +|+++|.+.||+++|+++|.++|++|+++|++|||||||||||+||++|+.+.|. .++++|++++++++..    |+ +
T Consensus        63 id~~~~~e~~s~~~F~~~a~~~i~~i~~~gk~pIlVGGTglYi~aLl~g~~~~~~~~~~~~R~~l~~~~~~~----g~-~  137 (322)
T 3exa_A           63 IDIKDPSESFSVADFQDLATPLITEIHERGRLPFLVGGTGLYVNAVIHQFNLGDIRADEDYRHELEAFVNSY----GV-Q  137 (322)
T ss_dssp             SSCBCTTSCCCHHHHHHHHHHHHHHHHHTTCEEEEESCCHHHHHHHHHTCCCCCCBCCHHHHHHHHHHHHHS----CH-H
T ss_pred             eccCChhhhccHHHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHHcCCcCCCCCCCHHHHHHHHHHHHhc----CH-H
Confidence            6899999999999999999999999999999999999999999999999977776 6788998887777653    44 6


Q ss_pred             HHHHHHHhCCcc-cccCCCCCHHHHHHHHHHHHHhCCCCCCccCCCccccccCCCCccccccccccCCCCCCCCCCCCCC
Q 018647           80 AVEFVVKAGDPK-ARSLAANDWYRLRRSLEIIKSTGSPPSAFQIPYDSFREHSDSSETDHSYERNSSAGASDTNPKDLDY  158 (352)
Q Consensus        80 ~l~~lL~~~DP~-A~~ih~ND~~Rl~RALEI~~~TG~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y  158 (352)
                      +++..|+++||. |++|||||++||+|||||+..||+|+|+++..      +                     ....++|
T Consensus       138 ~L~~~L~~~DP~~A~~i~pnd~~Ri~RALEV~~~TG~~~S~~~~~------~---------------------~~~~~~~  190 (322)
T 3exa_A          138 ALHDKLSKIDPKAAAAIHPNNYRRVIRALEIIKLTGKTVTEQARH------E---------------------EETPSPY  190 (322)
T ss_dssp             HHHHHHHTTCHHHHTTSCTTCHHHHHHHHHHHHHTC-----------------------------------------CCS
T ss_pred             HHHHHHHhhCHHHHhhcCcccHHHHHHHHHHHHHHCCCHHHHhhh------c---------------------cCCCCCC
Confidence            789999999995 88999999999999999999999999998532      1                     0124579


Q ss_pred             ceEEEEEeCCHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHcCCCCCCccccccccHHHHHHHHHHhhhCCCCCCHHHHH
Q 018647          159 DFMCFFLSSHRLDLYRSIDLRCEDMLPGSDGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFY  238 (352)
Q Consensus       159 d~~~~~L~~~R~~L~~rI~~Rvd~Ml~~~~GLl~Ev~~L~~~g~~~~~~~a~~aIGYkE~~~yL~~~~~~~g~~s~~e~~  238 (352)
                      ++++|||++||+.||+||++||+.||+  +||++||++|++.| .++ .+++|||||||+++||.      |++|++++ 
T Consensus       191 ~~~~i~L~~~R~~L~~RI~~Rvd~Ml~--~Gl~eEv~~L~~~~-~~~-~~a~~aIGYkE~~~yL~------G~~sl~ea-  259 (322)
T 3exa_A          191 NLVMIGLTMERDVLYDRINRRVDQMVE--EGLIDEAKKLYDRG-IRD-CQSVQAIGYKEMYDYLD------GNVTLEEA-  259 (322)
T ss_dssp             EEEEEEEECCHHHHHHHHHHHHHHHHH--HTHHHHHHHHHHTT-CCS-STGGGSTTTHHHHHHHH------TSSCHHHH-
T ss_pred             ceEEEEEeCCHHHHHHHHHHHHHHHHH--CCHHHHHHHHHhcC-CCc-CccceeeeHHHHHHHHC------CCCCHHHH-
Confidence            999999999999999999999999999  99999999999998 665 58999999999999998      99999875 


Q ss_pred             HHHHHHHHHHHHHHhHHHHHhcCCCCceeecCCC-CHHHHHHHHHHHhh
Q 018647          239 AFLAEFQKASRNFAKRQLTWFRNERIYHWLNAAR-PLENVLNYIITAYH  286 (352)
Q Consensus       239 ~~le~i~~~TRqyAKRQ~TWfR~~~~~~Wid~~~-~~e~i~~~i~~~~~  286 (352)
                        ++.++++||||||||+||||+++.++|+|++. ..+.+++.|.+.+.
T Consensus       260 --ie~i~~~TR~yAKRQ~TWfR~~~~~~w~~~~~~~~~~i~~~i~~~~~  306 (322)
T 3exa_A          260 --IDTLKRNSRRYAKRQLTWFRNKANVTWFDMTDVDFDKKIMEIHNFIA  306 (322)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHTSTTEEEEECTTCCHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHHHhcCCCCCeEeCCCCCCHHHHHHHHHHHHH
Confidence              89999999999999999999999999999865 46677777777654
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A Back     alignment and structure
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A Back     alignment and structure
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* Back     alignment and structure
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} Back     alignment and structure
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} Back     alignment and structure
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00