Citrus Sinensis ID: 018667

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350--
Protein Sequence
MLISVRESGNPPSSGSRTFVLLRAFVLKLKLQIDMSTVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYLVTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKSGGFKVTGKMSTQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQVADGDVCRNMTLPIYVILPRLLTCPTVLAGPFSVEFKVSVVISFRSELSKLHKKSDPTTPRLWLAMETLPLELVRTN
Secondary Structure (PSIPRED)
cEEEEEEcccccccccEEEEEEEEEEEEEEEEcccEEEEEEEEcccccccccccEEEEEEEEccccEEEEEEEEEEEEEEEEEEEcccccEEEEEEcccccEEEEEEEEEEEcccccccccEEEEEEEEEccccccccccEEEEEEEEEEEEEEEEEEEEEccccccccccEEEEEEEEccccccccccccccEEEEEccccccccccccccccccEEEEEEEEEEEccccEEEEEEEEEEcccEEEEEEEEEEEEEEEEcccEEEEEEEEEEEEEEccccccccEEcEEEEccccccccccccccEEEEEEEEEEEEEEccccccccccccccccEEEEEccccEEEEEcc
Secondary Structure Prediction (SSPRO)
ccEEEEcccccccccccHEEEcccEEEEEEEEEEccEEEEEEEccccEEEcccEEEEEEEEEccccEEEcEEEEEEEEEEEEEEccccEEEEEEEEcccccHHHHHHHHHHcccccccccccEEcEEEEcccccccEEEccEEEEccEEEEEEEEEEEEEEHHHHHHHcHEEEEEEEEcccccccccccccccEEEEEcHcHcccccHHHcccccEEEEEEEccEEEEcccEEEEEEEEEEEEEEEEEEEEEEEEEcccccccccccccHEEEEEEEccccccccEEEEEEEEcccccccccEcccEEEEEEEEEEEEEHHHHHHHcccccccccccEEEEccccEEEEEcc
Coil and Loop (DISEMBL)
mlisvresgnppssgsrTFVLLRAFVLKLKLQIDMSTVEIKlsrsnriyrpseplqgkivikssssiFHYGIHLtvngsanlqvrggsAGVVESLYGVIKPIKILKKSQeirtsgrigsgttevpfsmnlkqhgeENLERFYETfhgadiniQYLVTVDIMRGYLHKSLSATVEFIVETdkadllerpvspemVVFYITQdtqrhpllpelksggfkvtgkmstqcslldpitgeltveassvpihsiDIHLLRMESILLGEkiisetsliqttqvadgdvcrnmtlpiyvilprlltcptvlagpfsvEFKVSVVISFRSELSklhkksdpttpRLWLAMETLplelvrtn
Flexible Loop (DISEMBL)
mlisvresgnppssgsrTFVLLRAFVLKLklqidmstveiklsrsnriyrpseplqgKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIkpikilkksqeirtsgrigsgttevpfsMNLKQHGEENLERFYETFHGADINIQYLVTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKSGGFKVTGKMSTQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQttqvadgdvcrNMTLPIYVILPRLLTCPTVLAGPFSVEFKVSVVISFRselsklhkksdpttprlwlametlplelvrtn
Low Complexity Region (SEG)
MLISVRESGNPPSSGSRTFVLLRAFVLKLKLQIDMSTVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYLVTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKSGGFKVTGKMSTQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQVADGDVCRNMTLPIYVILPRLLTCPTVLAGPFSVEFKVSVVISFRSELSKLHKKSDPTTPRLWLAMETLPLELVRTN
Disordered region (IsUnstruct)
*****************TFVLLRAFVLKLKLQIDMSTVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKS***************************ENLERFYETFHGADINIQYLVTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKSGGFKVTGKMSTQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQVADGDVCRNMTLPIYVILPRLLTCPTVLAGPFSVEFKVSVVISFRSEL************RLWLAMETLPL******
Disordered Region (DISOPRED)
********************LLRAFVLKLKLQIDMSTVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRT**RIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYLVTVDIMRGYLHKSLSATVEFIVETDKA******************************SGGFKVTGKMSTQCSLLDPITGELTVEASSVPIHSIDIHLLRMESI*********TSLIQTTQVADGDVCRNMTLPIYVILPRLLTCPTVLAGPFSVEFKVSVVISFRSELSKLHKKSDPTTPRLWLAMETLPLELVRT*
Disordered Region (DISEMBL)
***************SRTFVLLRAFVLKLKLQIDMSTVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYLVTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKSGGFKVTGKMSTQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQVADGDVCRNMTLPIYVILPRLLTCPTVLAGPFSVEFKVSVVISFRSELSKLHKKSDPTTPRLWLAMETLPLELVRTN
Disordered Region (DISPRO)
*LISVRESGNPPSSGSRTFVLLRAFVLKLKLQIDMSTVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYLVTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKSGGFKVTGKMSTQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQVADGDVCRNMTLPIYVILPRLLTCPTVLAGPFSVEFKVSVVISFRSELSKLHKKSDPTTPRLWLAMETLPLELVRT*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLISVRESGNPPSSGSRTFVLLRAFVLKLKLQIDMSTVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYLVTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKSGGFKVTGKMSTQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQVADGDVCRNMTLPIYVILPRLLTCPTVLAGPFSVEFKVSVVISFRSELSKLHKKSDPTTPRLWLAMETLPLELVRTN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	352	2.2.26 [Sep-21-2011]
O35075	297	Down syndrome critical re	yes	no	0.818	0.969	0.383	7e-56
Q5RF33	297	Down syndrome critical re	yes	no	0.821	0.973	0.375	4e-54
O14972	297	Down syndrome critical re	yes	no	0.821	0.973	0.371	8e-54
Q54DI8	304	Down syndrome critical re	yes	no	0.843	0.976	0.309	8e-44
Q8I4T1	297	Vacuolar protein sorting-	yes	no	0.664	0.787	0.200	3e-05

>sp|O35075|DSCR3_MOUSE Down syndrome critical region protein 3 homolog OS=Mus musculus GN=Dscr3 PE=2 SV=1

 Score =  218 bits (554), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 124/323 (38%), Positives = 182/323 (56%), Gaps = 35/323 (10%)

Query: 36  STVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESL 95
           +T++IK+ R+N++Y   E L G +VI S  S+ H G+ LT+ G+ NLQ+   S GV E+ 
Sbjct: 3   TTLDIKIKRANKVYHAGEMLSGVVVISSKDSVQHQGVSLTMEGTVNLQLSAKSVGVFEAF 62

Query: 96  YGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYL 155
           Y  +KPI+I+  + ++   G+I SG TEVPF   L   G + L   YET+HG  +NIQY 
Sbjct: 63  YNSVKPIQIINSTIDVLKPGKIPSGKTEVPFEFPLLVKGSKVL---YETYHGVFVNIQYT 119

Query: 156 VTVDIMRGYLHKSLSATVEFIVET--DKADLLERPVSPEMVVFYIT----QDTQRHPLLP 209
           +  D+ R  L K L+ T EFIV +   K  L   PV      F IT    Q+ +    LP
Sbjct: 120 LRCDMRRSLLAKDLTKTCEFIVHSAPQKGKLTPSPVD-----FTITPETLQNVKERASLP 174

Query: 210 ELKSGGFKVTGKM-STQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISET 268
           +     F + G + ST C++  P+TGEL VE S   I SI++ L+R+E+    E    + 
Sbjct: 175 K-----FFIRGHLNSTNCAITQPLTGELVVEHSDAAIRSIELQLVRVETCGCAEGYARDA 229

Query: 269 SLIQTTQVADGDVCRNMTLPIYVILPRLLTCPTVLAGPFSVEFKVSVVISFRSELSKLHK 328
           + IQ  Q+ADGD+CRN+++P+Y++ PRL TCPT+    F VEF+V+VV+   ++      
Sbjct: 230 TEIQNIQIADGDICRNLSVPLYMVFPRLFTCPTLETTNFKVEFEVNVVVLLHAD------ 283

Query: 329 KSDPTTPRLWLAMETLPLELVRT 351
                     L  E  PL+L RT
Sbjct: 284 ---------HLITENFPLKLCRT 297

Mus musculus (taxid: 10090)

>sp|Q5RF33|DSCR3_PONAB Down syndrome critical region protein 3 homolog OS=Pongo abelii GN=DSCR3 PE=2 SV=1

 Score =  212 bits (539), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 120/320 (37%), Positives = 178/320 (55%), Gaps = 31/320 (9%)

Query: 36  STVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESL 95
           + ++IK+ R+N++Y   E L G +VI S  S+ H G+ LT+ G+ NLQ+   S GV E+ 
Sbjct: 3   TALDIKIKRANKVYHAGEVLSGVVVISSKDSVQHQGVSLTMEGTVNLQLSAKSVGVFEAF 62

Query: 96  YGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYL 155
           Y  +KPI+I+  + E+   G+  SG TE+PF   L   G + L   YET+HG  +NIQY 
Sbjct: 63  YNSVKPIQIINSNIEMVKPGKFPSGKTEIPFEFPLHVKGNKVL---YETYHGVFVNIQYT 119

Query: 156 VTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYIT----QDTQRHPLLPEL 211
           +  D+ R  L K L+ T EFIV +      +   SP  V F IT    Q+ +   LLP+ 
Sbjct: 120 LRCDMKRSLLAKDLTKTCEFIVHSAPQ---KGKFSPSPVHFTITPETLQNARERALLPK- 175

Query: 212 KSGGFKVTGKM-STQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSL 270
               F + G + ST C +  P+TGEL VE+S   I S+++ L+R+E+    E    + + 
Sbjct: 176 ----FLLRGHLNSTNCVITQPLTGELVVESSEAAIRSVELQLVRVETCGCAEGYARDATE 231

Query: 271 IQTTQVADGDVCRNMTLPIYVILPRLLTCPTVLAGPFSVEFKVSVVISFRSELSKLHKKS 330
           IQ  Q+ADGDVCR +++PIY++ PRL TCPT+    F VEF+V++V+    +        
Sbjct: 232 IQNIQIADGDVCRGLSVPIYMVFPRLFTCPTLETTNFKVEFEVNIVVLLHPD-------- 283

Query: 331 DPTTPRLWLAMETLPLELVR 350
                   L  E  PL+L R
Sbjct: 284 -------HLITENFPLKLCR 296

Pongo abelii (taxid: 9601)

>sp|O14972|DSCR3_HUMAN Down syndrome critical region protein 3 OS=Homo sapiens GN=DSCR3 PE=2 SV=1

 Score =  211 bits (536), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 119/320 (37%), Positives = 178/320 (55%), Gaps = 31/320 (9%)

Query: 36  STVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESL 95
           + ++IK+ R+N++Y   E L G +VI S  S+ H G+ LT+ G+ NLQ+   S GV E+ 
Sbjct: 3   TALDIKIKRANKVYHAGEVLSGVVVISSKDSVQHQGVSLTMEGTVNLQLSAKSVGVFEAF 62

Query: 96  YGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYL 155
           Y  +KPI+I+  + E+   G+  SG TE+PF   L   G + L   YET+HG  +NIQY 
Sbjct: 63  YNSVKPIQIINSTIEMVKPGKFPSGKTEIPFEFPLHLKGNKVL---YETYHGVFVNIQYT 119

Query: 156 VTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYIT----QDTQRHPLLPEL 211
           +  D+ R  L K L+ T EFIV +      +   +P  V F IT    Q+ +   LLP+ 
Sbjct: 120 LRCDMKRSLLAKDLTKTCEFIVHSAPQ---KGKFTPSPVDFTITPETLQNVKERALLPK- 175

Query: 212 KSGGFKVTGKM-STQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSL 270
               F + G + ST C +  P+TGEL VE+S   I S+++ L+R+E+    E    + + 
Sbjct: 176 ----FLLRGHLNSTNCVITQPLTGELVVESSEAAIRSVELQLVRVETCGCAEGYARDATE 231

Query: 271 IQTTQVADGDVCRNMTLPIYVILPRLLTCPTVLAGPFSVEFKVSVVISFRSELSKLHKKS 330
           IQ  Q+ADGDVCR +++PIY++ PRL TCPT+    F VEF+V++V+    +        
Sbjct: 232 IQNIQIADGDVCRGLSVPIYMVFPRLFTCPTLETTNFKVEFEVNIVVLLHPD-------- 283

Query: 331 DPTTPRLWLAMETLPLELVR 350
                   L  E  PL+L R
Sbjct: 284 -------HLITENFPLKLCR 296

Homo sapiens (taxid: 9606)

>sp|Q54DI8|DSCR3_DICDI Down syndrome critical region protein 3 homolog OS=Dictyostelium discoideum GN=DDB_G0292212 PE=3 SV=1

 Score =  177 bits (450), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 99/320 (30%), Positives = 172/320 (53%), Gaps = 23/320 (7%)

Query: 36  STVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESL 95
           + +++KL + ++IYRP   + G +VI S   + H G+ + V G+  LQ+   S G+ E+ 
Sbjct: 3   NVLDLKLKKIDKIYRPGSKVSGNVVINSKDDMSHSGVTIVVEGTVQLQLSSKSVGLFEAF 62

Query: 96  YGVIKPIKILKKSQEIRTSG-RIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQY 154
           Y  +KPI ++  +  +   G +  +G TE+PF   L+    + L   Y+T+HG  +NIQY
Sbjct: 63  YNSLKPITLMHYTISVTNGGGKFQAGITELPFEFTLEPLPNQQL---YDTYHGVFVNIQY 119

Query: 155 LVTVDIMRGYLHKSLSATVEFIVE--TDKADLLERPVSPEMVVFYITQDT-QRHPLLPEL 211
            +  D+ RG L K LS T+EFIVE  +   ++L +     ++ F IT D+      + + 
Sbjct: 120 SIKCDVKRGILSKDLSKTIEFIVEVPSQNKEVLMKSTPESLITFNITPDSLVNFKKISKA 179

Query: 212 KSGGFKVTGKM-STQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSL 270
               FK++G + S  C++ +   G + +E++   I S+++ L+R+E+    +    E + 
Sbjct: 180 DVPTFKISGGLVSAICNINEAFQGHMIIESADTVIKSVELQLVRVETCGCADGYAREVTE 239

Query: 271 IQTTQVADGDVCRNMTLPIYVILPRLLTCPTVLAGPFSVEFKVSVVISFRSELSKLHKKS 330
           IQ  Q+ADGD+ RN  +P+Y++ PRL TC +     F +EF+V++VI     L   H   
Sbjct: 240 IQNIQIADGDIWRNFKIPLYMVFPRLFTCISTAGKTFKIEFEVNLVIM----LEDGH--- 292

Query: 331 DPTTPRLWLAMETLPLELVR 350
                   L  E  P++L+R
Sbjct: 293 --------LITENFPIKLIR 304

Dictyostelium discoideum (taxid: 44689)

>sp|Q8I4T1|VPS26_PLAF7 Vacuolar protein sorting-associated protein 26 OS=Plasmodium falciparum (isolate 3D7) GN=PFL2415w PE=3 SV=1

 Score = 50.1 bits (118), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/274 (20%), Positives = 118/274 (43%), Gaps = 40/274 (14%)

Query: 48  IYRPSEPLQGK--IVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKIL 105
           I+   E + G   I +K      HYGI L + G  N+     ++    S+   ++P   L
Sbjct: 38  IFSDGEDINGTATISLKPGKKFEHYGIKLELIGQINILNDKANSYDFFSISKDLEPPGFL 97

Query: 106 KKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYLVTVDIMRGYL 165
            +S++ +             FS   KQH         E++ G ++ ++Y V ++I++GY 
Sbjct: 98  VESKQFKWK-----------FSAVDKQH---------ESYFGTNVQLRYFVRLNIIKGY- 136

Query: 166 HKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKSGGFKVTGKMSTQ 225
             ++   ++FIV+    +L   P     +   +  +   H      KS           +
Sbjct: 137 SGNIQKEIDFIVQ----NLCIPPEINNTIKMEVGIEDCLHIEFEYDKS-----------K 181

Query: 226 CSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQVADGDVCRNM 285
             L D + G++      + I  +++ +++ME+  +G+   +ET  +   ++ DG   ++ 
Sbjct: 182 YHLKDVVVGKVYFLLVRIKIKHMELDIIKMETSGVGKNYTTETVTLSKFEIMDGSPIKSE 241

Query: 286 TLPIYVILPRLLTCPTV--LAGPFSVEFKVSVVI 317
            +P+ + L      PT   +   FSV++ ++++I
Sbjct: 242 CIPVRLYLSGFDLTPTYKNIQNKFSVKYYINLII 275

May play a role in vesicular protein sorting, similar to the yeast retromer proteins.

Plasmodium falciparum (isolate 3D7) (taxid: 36329)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	352
224133236	319	predicted protein [Populus trichocarpa]	0.900	0.993	0.811	1e-152
356531146	316	PREDICTED: Down syndrome critical region	0.894	0.996	0.797	1e-149
356520661	316	PREDICTED: Down syndrome critical region	0.894	0.996	0.787	1e-147
357499097	321	Down syndrome critical region protein-li	0.889	0.975	0.757	1e-140
225456175	314	PREDICTED: Down syndrome critical region	0.889	0.996	0.743	1e-140
297734337	314	unnamed protein product [Vitis vinifera]	0.889	0.996	0.740	1e-140
297852472	327	vacuolar protein sorting-associated prot	0.903	0.972	0.726	1e-139
26450434	327	unknown protein [Arabidopsis thaliana]	0.900	0.969	0.722	1e-138
15221215	327	Vacuolar protein sorting-associated prot	0.900	0.969	0.722	1e-138
449439465	320	PREDICTED: Down syndrome critical region	0.894	0.984	0.743	1e-137

>gi|224133236|ref|XP_002321517.1| predicted protein [Populus trichocarpa] gi|222868513|gb|EEF05644.1| predicted protein [Populus trichocarpa]

 Score =  543 bits (1398), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 258/318 (81%), Positives = 295/318 (92%), Gaps = 1/318 (0%)

Query: 35  MST-VEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVE 93
           MST + +K SRSNRIYRPSEP++GKIVIKS SSI HYGI L+VNGS NLQVRGGSAGV+E
Sbjct: 1   MSTKIALKFSRSNRIYRPSEPVEGKIVIKSPSSISHYGIRLSVNGSVNLQVRGGSAGVIE 60

Query: 94  SLYGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQ 153
           + YGV+KPI I+ KS E++ SG+IGSGTTEVPF+M LKQ+GE++LERFYETFHG D++IQ
Sbjct: 61  TFYGVVKPITIVNKSIEVKPSGKIGSGTTEVPFTMVLKQNGEKSLERFYETFHGTDVSIQ 120

Query: 154 YLVTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKS 213
           YL TVDI RGYL+KSLSAT+E IVE+DKADLLERPVSPEM +FYITQDTQRHPLLPE+KS
Sbjct: 121 YLFTVDIARGYLYKSLSATMEVIVESDKADLLERPVSPEMAIFYITQDTQRHPLLPEIKS 180

Query: 214 GGFKVTGKMSTQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQT 273
           GGF+VTG+MST CSLLDPI+GELTVE S+VPI SIDIHLLR+ESIL+GEKI++ETSLIQT
Sbjct: 181 GGFRVTGRMSTLCSLLDPISGELTVETSAVPISSIDIHLLRVESILMGEKIVTETSLIQT 240

Query: 274 TQVADGDVCRNMTLPIYVILPRLLTCPTVLAGPFSVEFKVSVVISFRSELSKLHKKSDPT 333
           TQ+ADGDVCRN+TLPIYVILPRLLTCP+V AGPFS+EFKVS+VISF+SELSKLHKKSDP 
Sbjct: 241 TQIADGDVCRNLTLPIYVILPRLLTCPSVFAGPFSIEFKVSIVISFQSELSKLHKKSDPR 300

Query: 334 TPRLWLAMETLPLELVRT 351
           TPRLWLAMETLPLELVRT
Sbjct: 301 TPRLWLAMETLPLELVRT 318

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531146|ref|XP_003534139.1| PREDICTED: Down syndrome critical region protein 3 homolog [Glycine max]

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 252/316 (79%), Positives = 291/316 (92%), Gaps = 1/316 (0%)

Query: 37  TVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLY 96
           +VE+KLSRSNRIYRPSE L+GKIV+K+ SSI HYGI LTV GS NLQVRGGSAGVVES Y
Sbjct: 2   SVELKLSRSNRIYRPSEALEGKIVVKTQSSISHYGIRLTVKGSVNLQVRGGSAGVVESFY 61

Query: 97  GVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYLV 156
           GVIKPI I+ ++ E+++SG+IGSGT+E+PFS+NL+Q  +ENLERFYETFHGA+I+IQYL 
Sbjct: 62  GVIKPIPIVNRTIEVKSSGKIGSGTSEIPFSVNLRQR-DENLERFYETFHGANISIQYLA 120

Query: 157 TVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKSGGF 216
           TVDI RGYLHKSLSAT+E IVE+DKADLL+RP+SPEM +FYITQDTQRHPLLPELKSGGF
Sbjct: 121 TVDISRGYLHKSLSATMELIVESDKADLLQRPLSPEMAIFYITQDTQRHPLLPELKSGGF 180

Query: 217 KVTGKMSTQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQV 276
           +VTGK+ TQCSL  PI+GELTVE S+VPIHSID+ L R+ESILLGEKI++ETSL+QTTQ+
Sbjct: 181 RVTGKICTQCSLSGPISGELTVETSAVPIHSIDLQLFRVESILLGEKIVTETSLVQTTQI 240

Query: 277 ADGDVCRNMTLPIYVILPRLLTCPTVLAGPFSVEFKVSVVISFRSELSKLHKKSDPTTPR 336
           ADGDVCRNMTLPIYVI+PRLLTCPT LAGPFSVEFKV++VISF+SELSKLHKKSDP TPR
Sbjct: 241 ADGDVCRNMTLPIYVIVPRLLTCPTTLAGPFSVEFKVAIVISFQSELSKLHKKSDPKTPR 300

Query: 337 LWLAMETLPLELVRTN 352
           LWLAMETLPLEL+RT 
Sbjct: 301 LWLAMETLPLELIRTK 316

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520661|ref|XP_003528979.1| PREDICTED: Down syndrome critical region protein 3 homolog [Glycine max]

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 249/316 (78%), Positives = 289/316 (91%), Gaps = 1/316 (0%)

Query: 37  TVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLY 96
           +VE+KLSRSNRIYRPSE L+GKI++K+ SSI HYGI LTV GS NLQVRGGSAGVVES Y
Sbjct: 2   SVELKLSRSNRIYRPSEALEGKIIVKTQSSISHYGIRLTVKGSVNLQVRGGSAGVVESFY 61

Query: 97  GVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYLV 156
           GVIKPI I+ ++ E+++SG+IGSGT+E+PFS+NL+Q  +ENLERFYETFHGA+I+IQYL 
Sbjct: 62  GVIKPIPIVNRTIEVKSSGKIGSGTSEIPFSVNLRQR-DENLERFYETFHGANISIQYLA 120

Query: 157 TVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKSGGF 216
           TVDI RGYLHKSLSAT+EFIVE+DKADL ++P+SPEM +FYITQDTQRHPLLPELKSGGF
Sbjct: 121 TVDISRGYLHKSLSATMEFIVESDKADLQQQPLSPEMAIFYITQDTQRHPLLPELKSGGF 180

Query: 217 KVTGKMSTQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQV 276
           +VTGK+STQCSL  PI+GELTVE S+VPIHSIDI L R+ES+LLGEKI++ETSL+QTTQ+
Sbjct: 181 RVTGKISTQCSLSGPISGELTVETSAVPIHSIDIQLFRVESVLLGEKIVTETSLVQTTQI 240

Query: 277 ADGDVCRNMTLPIYVILPRLLTCPTVLAGPFSVEFKVSVVISFRSELSKLHKKSDPTTPR 336
           ADGDVC N+TLPIYVILPRLLTCPT LAGPFSVEFKV++VISF+SELSKLHKKSD  TPR
Sbjct: 241 ADGDVCHNLTLPIYVILPRLLTCPTTLAGPFSVEFKVAIVISFQSELSKLHKKSDAKTPR 300

Query: 337 LWLAMETLPLELVRTN 352
           LWLAMETL LELVRT 
Sbjct: 301 LWLAMETLLLELVRTK 316

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357499097|ref|XP_003619837.1| Down syndrome critical region protein-like protein [Medicago truncatula] gi|355494852|gb|AES76055.1| Down syndrome critical region protein-like protein [Medicago truncatula]

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 243/321 (75%), Positives = 283/321 (88%), Gaps = 8/321 (2%)

Query: 37  TVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLY 96
           +V +KLSR NRIYRPSE L+GKI++K+ SSI HYGI LT+ GS NLQVRGGSAGVVES Y
Sbjct: 2   SVHLKLSRPNRIYRPSELLEGKIIVKTQSSISHYGIRLTIKGSVNLQVRGGSAGVVESFY 61

Query: 97  GVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYLV 156
           GVIKPI I+K++ E+++S +IGSGTTE+PFS+NL+Q  +E+LERFYETFHGADI+IQYL+
Sbjct: 62  GVIKPIPIVKRTVEVQSSRKIGSGTTEIPFSLNLRQ--DEDLERFYETFHGADISIQYLL 119

Query: 157 TVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKSGGF 216
           TVDI RGYLHKSLSAT EFI+E+DK DLL+RP+ PEMV+FYITQDTQRHPLLPELKSGGF
Sbjct: 120 TVDISRGYLHKSLSATTEFIIESDKGDLLQRPIPPEMVIFYITQDTQRHPLLPELKSGGF 179

Query: 217 KVTGKMSTQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQ- 275
           +VTGK+ TQCSL  P+ GELTVE S+VPI SIDI L R+ESIL GEKI++ETSLIQTTQ 
Sbjct: 180 RVTGKICTQCSLSSPLNGELTVERSAVPIQSIDIQLFRVESILHGEKIVTETSLIQTTQA 239

Query: 276 -----VADGDVCRNMTLPIYVILPRLLTCPTVLAGPFSVEFKVSVVISFRSELSKLHKKS 330
                +ADGDVCRN+TLPIYVILPRLLTCPT+ AGPFS+EFKV+VVI+F+SELSKL KKS
Sbjct: 240 SDAGFIADGDVCRNLTLPIYVILPRLLTCPTIFAGPFSIEFKVAVVITFQSELSKLQKKS 299

Query: 331 DPTTPRLWLAMETLPLELVRT 351
           D  TPRLWLAME LPLELVRT
Sbjct: 300 DSRTPRLWLAMEMLPLELVRT 320

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456175|ref|XP_002278791.1| PREDICTED: Down syndrome critical region protein 3 homolog [Vitis vinifera]

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 235/316 (74%), Positives = 286/316 (90%), Gaps = 3/316 (0%)

Query: 37  TVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLY 96
           ++EIKL R NRIY P+EPL+GKI++KS SSI HYGI LT++GS N QVRGGSAG +E+LY
Sbjct: 2   SIEIKLFRPNRIYFPAEPLEGKIILKSPSSISHYGIRLTLDGSVNRQVRGGSAGAIEALY 61

Query: 97  GVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYLV 156
           G +KPI+I+ KS EIR +G+IGSGTTE+PFS+ L+Q G++   RFYETFHGA+I+IQYLV
Sbjct: 62  GAVKPIRIVNKSVEIRPAGKIGSGTTEIPFSVILRQQGDD---RFYETFHGANISIQYLV 118

Query: 157 TVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKSGGF 216
           TVD+MRGYL+KSLSAT+EFI+++DKA+L E PV PEMV+FYITQDTQRHPLLPEL+SGGF
Sbjct: 119 TVDVMRGYLYKSLSATMEFIIDSDKANLFEPPVPPEMVIFYITQDTQRHPLLPELRSGGF 178

Query: 217 KVTGKMSTQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQV 276
           +VTGK+S+QCSLLDPI+GEL VEAS+VPIHSID+ L R+ESIL+GEKI++E+SLIQTTQ+
Sbjct: 179 RVTGKVSSQCSLLDPISGELIVEASAVPIHSIDLQLHRVESILVGEKIVTESSLIQTTQI 238

Query: 277 ADGDVCRNMTLPIYVILPRLLTCPTVLAGPFSVEFKVSVVISFRSELSKLHKKSDPTTPR 336
           ADGDVCR +T+PIYVILPRLLTCPTVLAGPFS+EFK+S+VI+F SEL KLH KSDP TPR
Sbjct: 239 ADGDVCRRVTIPIYVILPRLLTCPTVLAGPFSIEFKISIVITFESELVKLHPKSDPKTPR 298

Query: 337 LWLAMETLPLELVRTN 352
           LWLAMET+PLEL+RT 
Sbjct: 299 LWLAMETIPLELIRTK 314

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734337|emb|CBI15584.3| unnamed protein product [Vitis vinifera]

 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 234/316 (74%), Positives = 285/316 (90%), Gaps = 3/316 (0%)

Query: 37  TVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLY 96
           ++EIKL R NRIY P+EPL+GKI++KS SSI HYGI LT++GS N QVRGGSAG +E+LY
Sbjct: 2   SIEIKLFRPNRIYFPAEPLEGKIILKSPSSISHYGIRLTLDGSVNRQVRGGSAGAIEALY 61

Query: 97  GVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYLV 156
           G +KPI+I+ KS EIR +G+IGSGTTE+PFS+ L+Q G++   RFYETFHGA+I+IQYLV
Sbjct: 62  GAVKPIRIVNKSVEIRPAGKIGSGTTEIPFSVILRQQGDD---RFYETFHGANISIQYLV 118

Query: 157 TVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKSGGF 216
           TVD+MRGYL+KSLSAT+EFI+++DKA+L E PV PEMV+FYITQDTQRHPLLPEL+SGGF
Sbjct: 119 TVDVMRGYLYKSLSATMEFIIDSDKANLFEPPVPPEMVIFYITQDTQRHPLLPELRSGGF 178

Query: 217 KVTGKMSTQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQV 276
           +VTGK+S+QCSLLDPI+GEL VEAS+VPIHSID+ L R+ESIL+GEKI++E+SLIQTTQ 
Sbjct: 179 RVTGKVSSQCSLLDPISGELIVEASAVPIHSIDLQLHRVESILVGEKIVTESSLIQTTQA 238

Query: 277 ADGDVCRNMTLPIYVILPRLLTCPTVLAGPFSVEFKVSVVISFRSELSKLHKKSDPTTPR 336
           +DGDVCR +T+PIYVILPRLLTCPTVLAGPFS+EFK+S+VI+F SEL KLH KSDP TPR
Sbjct: 239 SDGDVCRRVTIPIYVILPRLLTCPTVLAGPFSIEFKISIVITFESELVKLHPKSDPKTPR 298

Query: 337 LWLAMETLPLELVRTN 352
           LWLAMET+PLEL+RT 
Sbjct: 299 LWLAMETIPLELIRTK 314

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297852472|ref|XP_002894117.1| vacuolar protein sorting-associated protein 26 family protein [Arabidopsis lyrata subsp. lyrata] gi|297339959|gb|EFH70376.1| vacuolar protein sorting-associated protein 26 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 231/318 (72%), Positives = 284/318 (89%)

Query: 35  MSTVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVES 94
           ++TV +KLSRSNRIYR SEP++GKIVIKS++SI H  I L+VNGS NLQVRGGSAGV+ES
Sbjct: 4   VTTVNVKLSRSNRIYRSSEPVEGKIVIKSATSISHQPIRLSVNGSVNLQVRGGSAGVIES 63

Query: 95  LYGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQY 154
            YGVIKPI+I+KK+ E+R+SG+I  GTTE+PFS+NL++ GE  +E+FYETFHG +INIQY
Sbjct: 64  FYGVIKPIQIVKKTIEVRSSGKIPPGTTEIPFSLNLREPGESIVEKFYETFHGTNINIQY 123

Query: 155 LVTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKSG 214
           L+T DI RGYLHK LSAT+EFI+E+ + DL ERP+ PEMV+FYITQDTQRHPLLPE+K+G
Sbjct: 124 LLTADIPRGYLHKPLSATMEFIIESGRVDLPERPIPPEMVIFYITQDTQRHPLLPEIKTG 183

Query: 215 GFKVTGKMSTQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTT 274
           GF+VTGK++TQCSL DP++GELTVEASSVPI SIDIHLLR+ESI++GE+I++ETSLIQ+T
Sbjct: 184 GFRVTGKLATQCSLQDPLSGELTVEASSVPITSIDIHLLRVESIIVGERIVTETSLIQST 243

Query: 275 QVADGDVCRNMTLPIYVILPRLLTCPTVLAGPFSVEFKVSVVISFRSELSKLHKKSDPTT 334
           Q+ADGDVCRNM+LPIYV+LPRLL CP+V AGPFSVEFKV + ISF+S+L+K   KSDPT 
Sbjct: 244 QIADGDVCRNMSLPIYVLLPRLLMCPSVFAGPFSVEFKVCITISFKSKLAKAQPKSDPTA 303

Query: 335 PRLWLAMETLPLELVRTN 352
           PRLW+A+E LPLELVRT 
Sbjct: 304 PRLWMALERLPLELVRTK 321

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26450434|dbj|BAC42331.1| unknown protein [Arabidopsis thaliana]

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 229/317 (72%), Positives = 283/317 (89%)

Query: 36  STVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESL 95
           +TV +KLSRSNRIYR SEP++GKIVIKS++SI H  I L+VNGS NLQVRGGSAGV+ES 
Sbjct: 5   TTVNVKLSRSNRIYRSSEPVEGKIVIKSAASISHQAIRLSVNGSVNLQVRGGSAGVIESF 64

Query: 96  YGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYL 155
           YGVIKPI+I+KK+ E+++SG+I  GTTE+PFS+NL++ GE  +E+FYETFHG +INIQYL
Sbjct: 65  YGVIKPIQIVKKTIEVKSSGKIPPGTTEIPFSLNLREPGEGIVEKFYETFHGTNINIQYL 124

Query: 156 VTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKSGG 215
           +T DI RGYLHK LSAT+EFI+E+ + DL ERP+ PE+V+FYITQDTQRHPLLP++K+GG
Sbjct: 125 LTADIPRGYLHKPLSATMEFIIESGRVDLPERPIPPEIVIFYITQDTQRHPLLPDIKTGG 184

Query: 216 FKVTGKMSTQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQ 275
           F+VTGK++TQCSL DP++GELTVEASSVPI SIDIHLLR+ESI++GE+I++ETSLIQ+TQ
Sbjct: 185 FRVTGKLATQCSLQDPLSGELTVEASSVPITSIDIHLLRVESIIVGERIVTETSLIQSTQ 244

Query: 276 VADGDVCRNMTLPIYVILPRLLTCPTVLAGPFSVEFKVSVVISFRSELSKLHKKSDPTTP 335
           +ADGDVCRNMTLPIYV+LPRLL CP+V AGPFSVEFKV + ISF+S+L+K   KSDPT P
Sbjct: 245 IADGDVCRNMTLPIYVLLPRLLMCPSVFAGPFSVEFKVCITISFKSKLAKAQPKSDPTAP 304

Query: 336 RLWLAMETLPLELVRTN 352
           RLW+A+E LPLELVRT 
Sbjct: 305 RLWMALERLPLELVRTK 321

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221215|ref|NP_175288.1| Vacuolar protein sorting-associated protein 26 [Arabidopsis thaliana] gi|332194192|gb|AEE32313.1| Vacuolar protein sorting-associated protein 26 [Arabidopsis thaliana]

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 229/317 (72%), Positives = 283/317 (89%)

Query: 36  STVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESL 95
           +TV +KLSRSNRIYR SEP++GKIVIKS++SI H  I L+VNGS NLQVRGGSAGV+ES 
Sbjct: 5   TTVNVKLSRSNRIYRSSEPVEGKIVIKSATSISHQAIRLSVNGSVNLQVRGGSAGVIESF 64

Query: 96  YGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYL 155
           YGVIKPI+I+KK+ E+++SG+I  GTTE+PFS+NL++ GE  +E+FYETFHG +INIQYL
Sbjct: 65  YGVIKPIQIVKKTIEVKSSGKIPPGTTEIPFSLNLREPGEGIVEKFYETFHGTNINIQYL 124

Query: 156 VTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKSGG 215
           +T DI RGYLHK LSAT+EFI+E+ + DL ERP+ PE+V+FYITQDTQRHPLLP++K+GG
Sbjct: 125 LTADIPRGYLHKPLSATMEFIIESGRVDLPERPIPPEIVIFYITQDTQRHPLLPDIKTGG 184

Query: 216 FKVTGKMSTQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQ 275
           F+VTGK++TQCSL DP++GELTVEASSVPI SIDIHLLR+ESI++GE+I++ETSLIQ+TQ
Sbjct: 185 FRVTGKLATQCSLQDPLSGELTVEASSVPITSIDIHLLRVESIIVGERIVTETSLIQSTQ 244

Query: 276 VADGDVCRNMTLPIYVILPRLLTCPTVLAGPFSVEFKVSVVISFRSELSKLHKKSDPTTP 335
           +ADGDVCRNMTLPIYV+LPRLL CP+V AGPFSVEFKV + ISF+S+L+K   KSDPT P
Sbjct: 245 IADGDVCRNMTLPIYVLLPRLLMCPSVFAGPFSVEFKVCITISFKSKLAKAQPKSDPTAP 304

Query: 336 RLWLAMETLPLELVRTN 352
           RLW+A+E LPLELVRT 
Sbjct: 305 RLWMALERLPLELVRTK 321

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439465|ref|XP_004137506.1| PREDICTED: Down syndrome critical region protein 3-like [Cucumis sativus]

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 235/316 (74%), Positives = 279/316 (88%), Gaps = 1/316 (0%)

Query: 35  MSTVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVES 94
           M  VE+KLSR+NRIYRPSE LQG+I++ S SSI H GI L +NGS NLQVRGGSAGV+ES
Sbjct: 1   MPVVELKLSRTNRIYRPSEHLQGQIIVNSRSSISHSGIRLALNGSVNLQVRGGSAGVIES 60

Query: 95  LYGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQY 154
           +YGVIKPI I+ +S  +  SG++ SGT E+PFS+ L+Q  E NL ++YETFHG DINIQY
Sbjct: 61  VYGVIKPISIVNRSILVSPSGKLASGTNEIPFSVILRQPNE-NLGKYYETFHGTDINIQY 119

Query: 155 LVTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKSG 214
           LVTVDI RGYLHKSLSAT+EFIVE+D AD LERP+S EMV+FYITQDTQRHPLLPEL+SG
Sbjct: 120 LVTVDISRGYLHKSLSATMEFIVESDTADFLERPLSSEMVIFYITQDTQRHPLLPELRSG 179

Query: 215 GFKVTGKMSTQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTT 274
           GF+VTGKMST CSL DP+TGEL VE S+VPI+SIDIHL R+ES++LGE+II+ETS+IQTT
Sbjct: 180 GFRVTGKMSTLCSLSDPLTGELIVETSAVPINSIDIHLCRVESVILGERIITETSVIQTT 239

Query: 275 QVADGDVCRNMTLPIYVILPRLLTCPTVLAGPFSVEFKVSVVISFRSELSKLHKKSDPTT 334
           Q+ADGDVCRN+TLPIYVILPRLLTCPTV AGPFS+EFKV +VI+F+SELSKLH K+DP T
Sbjct: 240 QIADGDVCRNITLPIYVILPRLLTCPTVFAGPFSIEFKVYIVITFQSELSKLHPKTDPRT 299

Query: 335 PRLWLAMETLPLELVR 350
           PRLWLA+E+LP+EL+R
Sbjct: 300 PRLWLAIESLPMELLR 315

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	352
TAIR|locus:2198075	327	AT1G48550 "AT1G48550" [Arabido	0.897	0.966	0.724	9.9e-126
UNIPROTKB|F1SGV6	297	DSCR3 "Uncharacterized protein	0.769	0.912	0.407	2.1e-52
MGI|MGI:1206040	297	Dscr3 "Down syndrome critical	0.795	0.942	0.392	2.1e-52
UNIPROTKB|E2RM98	297	DSCR3 "Uncharacterized protein	0.784	0.929	0.397	3.1e-51
UNIPROTKB|E1BSI1	297	DSCR3 "Uncharacterized protein	0.778	0.922	0.394	8.3e-51
UNIPROTKB|O14972	297	DSCR3 "Down syndrome critical	0.769	0.912	0.393	1.1e-50
ZFIN|ZDB-GENE-040801-6	297	dscr3 "Down syndrome critical	0.772	0.915	0.383	1.5e-49
UNIPROTKB|A6QLW5	292	DSCR3 "Uncharacterized protein	0.755	0.910	0.393	2.9e-48
UNIPROTKB|B7Z6B1	270	DSCR3 "cDNA FLJ53650, highly s	0.349	0.455	0.406	9.7e-46
DICTYBASE|DDB_G0292212	304	vps26l "vacuolar protein sorti	0.792	0.917	0.320	2.8e-43

TAIR|locus:2198075 AT1G48550 "AT1G48550" [Arabidopsis thaliana (taxid:3702)]

 Score = 1235 (439.8 bits), Expect = 9.9e-126, P = 9.9e-126
 Identities = 229/316 (72%), Positives = 283/316 (89%)

Query:    36 STVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESL 95
             +TV +KLSRSNRIYR SEP++GKIVIKS++SI H  I L+VNGS NLQVRGGSAGV+ES 
Sbjct:     5 TTVNVKLSRSNRIYRSSEPVEGKIVIKSATSISHQAIRLSVNGSVNLQVRGGSAGVIESF 64

Query:    96 YGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYL 155
             YGVIKPI+I+KK+ E+++SG+I  GTTE+PFS+NL++ GE  +E+FYETFHG +INIQYL
Sbjct:    65 YGVIKPIQIVKKTIEVKSSGKIPPGTTEIPFSLNLREPGEGIVEKFYETFHGTNINIQYL 124

Query:   156 VTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKSGG 215
             +T DI RGYLHK LSAT+EFI+E+ + DL ERP+ PE+V+FYITQDTQRHPLLP++K+GG
Sbjct:   125 LTADIPRGYLHKPLSATMEFIIESGRVDLPERPIPPEIVIFYITQDTQRHPLLPDIKTGG 184

Query:   216 FKVTGKMSTQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQ 275
             F+VTGK++TQCSL DP++GELTVEASSVPI SIDIHLLR+ESI++GE+I++ETSLIQ+TQ
Sbjct:   185 FRVTGKLATQCSLQDPLSGELTVEASSVPITSIDIHLLRVESIIVGERIVTETSLIQSTQ 244

Query:   276 VADGDVCRNMTLPIYVILPRLLTCPTVLAGPFSVEFKVSVVISFRSELSKLHKKSDPTTP 335
             +ADGDVCRNMTLPIYV+LPRLL CP+V AGPFSVEFKV + ISF+S+L+K   KSDPT P
Sbjct:   245 IADGDVCRNMTLPIYVLLPRLLMCPSVFAGPFSVEFKVCITISFKSKLAKAQPKSDPTAP 304

Query:   336 RLWLAMETLPLELVRT 351
             RLW+A+E LPLELVRT
Sbjct:   305 RLWMALERLPLELVRT 320

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0007034 "vacuolar transport" evidence=IEA

GO:0030904 "retromer complex" evidence=IEA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=ISS

GO:0048573 "photoperiodism, flowering" evidence=RCA

UNIPROTKB|F1SGV6 DSCR3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 117/287 (40%), Positives = 172/287 (59%)

Query:    36 STVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESL 95
             +T++IK+ R+N++Y   E L G +VI    S+ H G+ LTV G+ NLQ+   S GV E+ 
Sbjct:     3 TTLDIKIKRANKVYHAGEMLSGVVVISGKDSVQHQGVSLTVEGTVNLQLSAKSVGVFEAF 62

Query:    96 YGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYL 155
             Y  +KPI+I+  + E+   G+  SG TE+PF   L   G + L   YET+HG  +NIQY 
Sbjct:    63 YNSVKPIQIINSTVEMAKPGKFPSGKTEIPFEFPLHVKGTKVL---YETYHGVFVNIQYT 119

Query:   156 VTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDT----QRHPLLPEL 211
             +  D+ R  L K L+ T EFIV +      +  ++P  V F IT DT    +   LLP+ 
Sbjct:   120 LRCDMKRSLLAKDLTKTCEFIVHSAPQ---KGKLTPSPVDFTITPDTLQNVKERALLPK- 175

Query:   212 KSGGFKVTGKM-STQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSL 270
                 F + G + ST C +  P+TGEL VE+S   I SI++ L+R+E+    E    + + 
Sbjct:   176 ----FLIRGHLNSTNCVITQPLTGELVVESSEAAIKSIELQLVRVETCGCAEGYARDATE 231

Query:   271 IQTTQVADGDVCRNMTLPIYVILPRLLTCPTVLAGPFSVEFKVSVVI 317
             IQ  Q+ADGDVCR++++PIY++ PRL TCPT+    F VEF+V+VV+
Sbjct:   232 IQNIQIADGDVCRSLSVPIYMVFPRLFTCPTLETTNFKVEFEVNVVV 278

GO:0005634 "nucleus" evidence=IEA

GO:0030904 "retromer complex" evidence=IEA

GO:0007034 "vacuolar transport" evidence=IEA

MGI|MGI:1206040 Dscr3 "Down syndrome critical region gene 3" [Mus musculus (taxid:10090)]

 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 113/288 (39%), Positives = 174/288 (60%)

Query:    36 STVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESL 95
             +T++IK+ R+N++Y   E L G +VI S  S+ H G+ LT+ G+ NLQ+   S GV E+ 
Sbjct:     3 TTLDIKIKRANKVYHAGEMLSGVVVISSKDSVQHQGVSLTMEGTVNLQLSAKSVGVFEAF 62

Query:    96 YGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYL 155
             Y  +KPI+I+  + ++   G+I SG TEVPF   L   G + L   YET+HG  +NIQY 
Sbjct:    63 YNSVKPIQIINSTIDVLKPGKIPSGKTEVPFEFPLLVKGSKVL---YETYHGVFVNIQYT 119

Query:   156 VTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKSGG 215
             +  D+ R  L K L+ T EFIV +      +  ++P  V F IT +T ++ +        
Sbjct:   120 LRCDMRRSLLAKDLTKTCEFIVHSAPQ---KGKLTPSPVDFTITPETLQN-VKERASLPK 175

Query:   216 FKVTGKM-STQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTT 274
             F + G + ST C++  P+TGEL VE S   I SI++ L+R+E+    E    + + IQ  
Sbjct:   176 FFIRGHLNSTNCAITQPLTGELVVEHSDAAIRSIELQLVRVETCGCAEGYARDATEIQNI 235

Query:   275 QVADGDVCRNMTLPIYVILPRLLTCPTVLAGPFSVEFKVSVVISFRSE 322
             Q+ADGD+CRN+++P+Y++ PRL TCPT+    F VEF+V+VV+   ++
Sbjct:   236 QIADGDICRNLSVPLYMVFPRLFTCPTLETTNFKVEFEVNVVVLLHAD 283

GO:0005634 "nucleus" evidence=ISO

GO:0007034 "vacuolar transport" evidence=IEA

GO:0030904 "retromer complex" evidence=IEA

UNIPROTKB|E2RM98 DSCR3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
 Identities = 116/292 (39%), Positives = 173/292 (59%)

Query:    36 STVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESL 95
             ++++IK+ R+N++Y   E L G +VI    SI H G+ LTV GS NLQ+   S GV E+ 
Sbjct:     3 TSLDIKIKRANKVYHAGEVLSGVVVISGKDSIQHQGVSLTVEGSVNLQLSAKSVGVFEAF 62

Query:    96 YGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYL 155
             Y  +KPI+I+  + E+   G+  SG TE+PF   L   G + L   YET+HG  +NIQY 
Sbjct:    63 YNSVKPIQIINSTIEMVKPGKFPSGKTEIPFEFPLHVKGNKVL---YETYHGVFVNIQYT 119

Query:   156 VTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDT----QRHPLLPEL 211
             +  D+ R  L K L+ T EFIV +      +  ++P  V F IT +T    +   LLP+ 
Sbjct:   120 LRCDMRRSLLAKDLTKTCEFIVHSAPQ---KGKLTPSPVDFTITPETLQNVKERALLPK- 175

Query:   212 KSGGFKVTGKM-STQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSL 270
                 F + G + ST C +  P+TGEL VE+S   I SI++ L+R+E+    E    + + 
Sbjct:   176 ----FLIRGHLNSTNCVITQPLTGELVVESSEAAIKSIELQLVRVETCGCAEGYARDATE 231

Query:   271 IQTTQVADGDVCRNMTLPIYVILPRLLTCPTVLAGPFSVEFKVSVVISFRSE 322
             IQ  Q+ADGDVCR +++PI+++ PRL TCPT+    F VEF+V+VV+   ++
Sbjct:   232 IQNIQIADGDVCRGLSVPIHMVFPRLFTCPTLETTNFKVEFEVNVVVLLHAD 283

GO:0030904 "retromer complex" evidence=IEA

GO:0007034 "vacuolar transport" evidence=IEA

UNIPROTKB|E1BSI1 DSCR3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
 Identities = 112/284 (39%), Positives = 172/284 (60%)

Query:    36 STVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESL 95
             + ++IK+ R+N++YR  E L G +VI S  ++ H GI LT+ GS NLQ+   S GV E+ 
Sbjct:     3 TALDIKIKRANKVYRCGEILSGVVVITSKDTVQHQGISLTMEGSVNLQLSAKSVGVFEAF 62

Query:    96 YGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYL 155
             Y  +KPI+I+  + E+   G++ SG TE+PF   L   G + L   YET+HG  +NIQY 
Sbjct:    63 YNSVKPIQIINSTIEMVKPGKLPSGKTEIPFEFPLHVKGNKVL---YETYHGVFVNIQYT 119

Query:   156 VTVDIMRGYLHKSLSATVEFIVETDKADLLER-PVSPEMVVFYITQDTQRHPLLPELKSG 214
             +  D+ R  L K L+ T EFIV +    L ++  ++P  V F IT +T ++ +       
Sbjct:   120 LRCDMRRSLLAKDLTKTCEFIVHS----LSQKGKLTPSPVDFTITPETLQN-VKERASLP 174

Query:   215 GFKVTGKMS-TQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQT 273
              F + G +S T C +  P+TGEL VE++   + SI++ L+R+E+    E    + + IQ 
Sbjct:   175 KFLIRGHLSSTNCVITQPLTGELVVESAEAAVKSIELQLVRVETCGCAEGYARDATEIQN 234

Query:   274 TQVADGDVCRNMTLPIYVILPRLLTCPTVLAGPFSVEFKVSVVI 317
              Q+ADGDVCR + +PIY++ PRL TCPT+    F VEF+V++V+
Sbjct:   235 IQIADGDVCRGLPIPIYMVFPRLFTCPTLETTNFKVEFEVNIVV 278

GO:0007034 "vacuolar transport" evidence=IEA

GO:0030904 "retromer complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|O14972 DSCR3 "Down syndrome critical region protein 3" [Homo sapiens (taxid:9606)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 113/287 (39%), Positives = 170/287 (59%)

Query:    36 STVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESL 95
             + ++IK+ R+N++Y   E L G +VI S  S+ H G+ LT+ G+ NLQ+   S GV E+ 
Sbjct:     3 TALDIKIKRANKVYHAGEVLSGVVVISSKDSVQHQGVSLTMEGTVNLQLSAKSVGVFEAF 62

Query:    96 YGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYL 155
             Y  +KPI+I+  + E+   G+  SG TE+PF   L   G + L   YET+HG  +NIQY 
Sbjct:    63 YNSVKPIQIINSTIEMVKPGKFPSGKTEIPFEFPLHLKGNKVL---YETYHGVFVNIQYT 119

Query:   156 VTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDT----QRHPLLPEL 211
             +  D+ R  L K L+ T EFIV +      +   +P  V F IT +T    +   LLP+ 
Sbjct:   120 LRCDMKRSLLAKDLTKTCEFIVHSAPQ---KGKFTPSPVDFTITPETLQNVKERALLPK- 175

Query:   212 KSGGFKVTGKM-STQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSL 270
                 F + G + ST C +  P+TGEL VE+S   I S+++ L+R+E+    E    + + 
Sbjct:   176 ----FLLRGHLNSTNCVITQPLTGELVVESSEAAIRSVELQLVRVETCGCAEGYARDATE 231

Query:   271 IQTTQVADGDVCRNMTLPIYVILPRLLTCPTVLAGPFSVEFKVSVVI 317
             IQ  Q+ADGDVCR +++PIY++ PRL TCPT+    F VEF+V++V+
Sbjct:   232 IQNIQIADGDVCRGLSVPIYMVFPRLFTCPTLETTNFKVEFEVNIVV 278

GO:0007034 "vacuolar transport" evidence=IEA

GO:0030904 "retromer complex" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

ZFIN|ZDB-GENE-040801-6 dscr3 "Down syndrome critical region gene 3" [Danio rerio (taxid:7955)]

 Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 109/284 (38%), Positives = 170/284 (59%)

Query:    37 TVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLY 96
             +++I+L R+N++Y   E L G +V+ S   + H G+ L++ G  NLQ+   S GV E+ Y
Sbjct:     4 SLDIRLKRANKVYHEGERLCGLLVVVSRDPLQHQGVSLSLEGLVNLQLSAKSVGVFEAFY 63

Query:    97 GVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYLV 156
               +KPI+++  + E+   G++ +G TE+PF   L+  G + L   YET+HG  +NIQY +
Sbjct:    64 NSVKPIQLVSSTMEVAKPGKVPAGRTEIPFEFPLQAKGNKQL---YETYHGVFVNIQYTL 120

Query:   157 TVDIMRGYLHKSLSATVEFIV--ETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKSG 214
               DI R  L K LS + EF+V  +  KA L   PV      F IT +T ++ +       
Sbjct:   121 RCDIRRSLLAKDLSKSCEFMVHCQPQKAKLQPNPVD-----FSITPETLQN-IRERASLP 174

Query:   215 GFKVTGKM-STQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQT 273
              F + G + +T CS+  P++GEL VE S VPI SI++ L+R+E+    E    + + IQ 
Sbjct:   175 RFLIRGHLDATCCSITRPLSGELVVENSEVPIKSIELQLVRVETCGCAEGYARDATEIQN 234

Query:   274 TQVADGDVCRNMTLPIYVILPRLLTCPTVLAGPFSVEFKVSVVI 317
              Q+A+GDVC  +++PIY++ PRL TCPT+    F VEF+V++VI
Sbjct:   235 IQIAEGDVCHGLSIPIYMVFPRLFTCPTLETTNFKVEFEVNIVI 278

GO:0007034 "vacuolar transport" evidence=IEA

GO:0030904 "retromer complex" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|A6QLW5 DSCR3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
 Identities = 113/287 (39%), Positives = 168/287 (58%)

Query:    36 STVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESL 95
             +T++IK+ R+N+     E L G +VI    S+ H G+ LTV G+ NLQ+   S GV E+ 
Sbjct:     3 TTLDIKIKRANK-----EMLSGVVVISGKDSVQHQGLSLTVEGTVNLQLSAKSVGVFEAF 57

Query:    96 YGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYL 155
             Y  +KPI+++  + E+   G+   G TE+PF   L  H + N +  YET+HG  +NIQY 
Sbjct:    58 YNSVKPIQVINSTIEMVKPGKFPGGKTEIPFEFPL--HVKSN-KVLYETYHGVFVNIQYT 114

Query:   156 VTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDT----QRHPLLPEL 211
             +  D+ R  L K L+ T EFIV +      +   +P  V F IT DT    +   LLP+ 
Sbjct:   115 LRCDMRRSLLAKDLTKTCEFIVHSTPQ---KGKWTPSPVDFTITPDTLQNVKERALLPK- 170

Query:   212 KSGGFKVTGKM-STQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSL 270
                 F + G + ST C +  P+TGEL VE+S   I SI++ L+R+E+    E    + + 
Sbjct:   171 ----FLIRGHLNSTNCVITQPLTGELVVESSEAAIKSIELQLVRVETCGCAEGYARDATE 226

Query:   271 IQTTQVADGDVCRNMTLPIYVILPRLLTCPTVLAGPFSVEFKVSVVI 317
             IQ  Q+ADGDVCR +++PIY++ PRL TCPT+    F VEF+V++V+
Sbjct:   227 IQNIQIADGDVCRGLSIPIYMVFPRLFTCPTLETTNFKVEFEVNIVV 273

GO:0005634 "nucleus" evidence=IEA

GO:0030904 "retromer complex" evidence=IEA

GO:0007034 "vacuolar transport" evidence=IEA

UNIPROTKB|B7Z6B1 DSCR3 "cDNA FLJ53650, highly similar to Down syndrome critical region protein 3" [Homo sapiens (taxid:9606)]

 Score = 252 (93.8 bits), Expect = 9.7e-46, Sum P(2) = 9.7e-46
 Identities = 54/133 (40%), Positives = 82/133 (61%)

Query:   190 SPEMVVFYITQDT----QRHPLLPELKSGGFKVTGKM-STQCSLLDPITGELTVEASSVP 244
             +P  V F IT +T    +   LLP+     F + G + ST C +  P+TGEL VE+S   
Sbjct:   124 TPSPVDFTITPETLQNVKERALLPK-----FLLRGHLNSTNCVITQPLTGELVVESSEAA 178

Query:   245 IHSIDIHLLRMESILLGEKIISETSLIQTTQVADGDVCRNMTLPIYVILPRLLTCPTVLA 304
             I S+++ L+R+E+    E    + + IQ  Q+ADGDVCR +++PIY++ PRL TCPT+  
Sbjct:   179 IRSVELQLVRVETCGCAEGYARDATEIQNIQIADGDVCRGLSVPIYMVFPRLFTCPTLET 238

Query:   305 GPFSVEFKVSVVI 317
               F VEF+V++V+
Sbjct:   239 TNFKVEFEVNIVV 251

GO:0007034 "vacuolar transport" evidence=IEA

GO:0030904 "retromer complex" evidence=IEA

DICTYBASE|DDB_G0292212 vps26l "vacuolar protein sorting-associated protein 26 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 92/287 (32%), Positives = 162/287 (56%)

Query:    36 STVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESL 95
             + +++KL + ++IYRP   + G +VI S   + H G+ + V G+  LQ+   S G+ E+ 
Sbjct:     3 NVLDLKLKKIDKIYRPGSKVSGNVVINSKDDMSHSGVTIVVEGTVQLQLSSKSVGLFEAF 62

Query:    96 YGVIKPIKILKKSQEIRTSG-RIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQY 154
             Y  +KPI ++  +  +   G +  +G TE+PF   L+    + L   Y+T+HG  +NIQY
Sbjct:    63 YNSLKPITLMHYTISVTNGGGKFQAGITELPFEFTLEPLPNQQL---YDTYHGVFVNIQY 119

Query:   155 LVTVDIMRGYLHKSLSATVEFIVE--TDKADLLERPVSPEMVVFYITQDTQ-RHPLLPEL 211
              +  D+ RG L K LS T+EFIVE  +   ++L +     ++ F IT D+      + + 
Sbjct:   120 SIKCDVKRGILSKDLSKTIEFIVEVPSQNKEVLMKSTPESLITFNITPDSLVNFKKISKA 179

Query:   212 KSGGFKVTGKM-STQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSL 270
                 FK++G + S  C++ +   G + +E++   I S+++ L+R+E+    +    E + 
Sbjct:   180 DVPTFKISGGLVSAICNINEAFQGHMIIESADTVIKSVELQLVRVETCGCADGYAREVTE 239

Query:   271 IQTTQVADGDVCRNMTLPIYVILPRLLTCPTVLAGPFSVEFKVSVVI 317
             IQ  Q+ADGD+ RN  +P+Y++ PRL TC +     F +EF+V++VI
Sbjct:   240 IQNIQIADGDIWRNFKIPLYMVFPRLFTCISTAGKTFKIEFEVNLVI 286

GO:0030904 "retromer complex" evidence=IEA

GO:0007034 "vacuolar transport" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O14972	DSCR3_HUMAN	No assigned EC number	0.3718	0.8210	0.9730	yes	no
O35075	DSCR3_MOUSE	No assigned EC number	0.3839	0.8181	0.9696	yes	no
Q5RF33	DSCR3_PONAB	No assigned EC number	0.375	0.8210	0.9730	yes	no
Q54DI8	DSCR3_DICDI	No assigned EC number	0.3093	0.8437	0.9769	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_XV1066 hypothetical protein (320 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	352
pfam03643	275	pfam03643, Vps26, Vacuolar protein sorting-associa	6e-29

>gnl|CDD|146336 pfam03643, Vps26, Vacuolar protein sorting-associated protein 26

 Score =  112 bits (282), Expect = 6e-29
 Identities = 56/277 (20%), Positives = 108/277 (38%), Gaps = 41/277 (14%)

Query: 45  SNRIYRPSEPLQGKIVI--KSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPI 102
            N +Y   E + GK+ I  K    + H GI +               G +E  Y    P 
Sbjct: 31  KNPVYYDGESVSGKVNIRLKDGKKVEHQGIKIEF------------VGQIELFYDRGNPH 78

Query: 103 KILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYLVTVDIMR 162
           +     +E+   G +    T  PF           +E+ YE++ G ++ ++Y + V ++R
Sbjct: 79  EFTNLVRELAPPGELTQSKT-FPFEFP-------LVEKPYESYIGVNVRLRYFLRVTVVR 130

Query: 163 GYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKSGGFKVTGKM 222
                 ++   +F V     +    P +   +   +  +   H      KS         
Sbjct: 131 RL--TDITKEKDFWVH----NFTTYPETNNSIKMEVGIEDCLHIEFEYNKS--------- 175

Query: 223 STQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQVADGDVC 282
             +  L D I G++      + I  +++ L+R ES   G    +E+  I   ++ DG   
Sbjct: 176 --KYHLKDVIVGKIYFLLVRIKIKHMELQLIRRESTGTGPNTFTESETIAKFEIMDGAPV 233

Query: 283 RNMTLPIYVILPRLLTCPTV--LAGPFSVEFKVSVVI 317
           R  ++PI + L      PT+  +   FSV++ +++V+
Sbjct: 234 RGESIPIRLFLAGYDLTPTMRDVNKKFSVKYFLNLVL 270

Vacuolar protein sorting-associated protein (Vps) 26 is one of around 50 proteins involved in protein trafficking. In particular, Vps26 assembles into a retromer complex with at least four other proteins Vps5, Vps17, Vps29 and Vps35. This family also contains Down syndrome critical region 3/A. Length = 275

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	352
KOG2717	313	consensus Uncharacterized conserved protein with s	100.0
PF03643	275	Vps26: Vacuolar protein sorting-associated protein	100.0
KOG3063	301	consensus Membrane coat complex Retromer, subunit	100.0
KOG3780	427	consensus Thioredoxin binding protein TBP-2/VDUP1	99.95
PF00339	149	Arrestin_N: Arrestin (or S-antigen), N-terminal do	99.88
PF02752	136	Arrestin_C: Arrestin (or S-antigen), C-terminal do	98.57
PF08737	415	Rgp1: Rgp1; InterPro: IPR014848 Rgp1 forms heterod	98.2
PF07070	218	Spo0M: SpoOM protein; InterPro: IPR009776 This fam	98.16
PF02752	136	Arrestin_C: Arrestin (or S-antigen), C-terminal do	98.14
KOG3865	402	consensus Arrestin [Signal transduction mechanisms	97.57
PF00339	149	Arrestin_N: Arrestin (or S-antigen), N-terminal do	97.03
PF13002	191	LDB19: Arrestin_N terminal like; InterPro: IPR0243	96.97
PF07070	218	Spo0M: SpoOM protein; InterPro: IPR009776 This fam	96.28
PF03643	275	Vps26: Vacuolar protein sorting-associated protein	95.07
PF04425	438	Bul1_N: Bul1 N terminus; InterPro: IPR007519 This	94.54
PF01835	99	A2M_N: MG2 domain; InterPro: IPR002890 The protein	94.27
COG4326	270	Spo0M Sporulation control protein [General functio	93.98
PF08737	415	Rgp1: Rgp1; InterPro: IPR014848 Rgp1 forms heterod	88.81
KOG3865	402	consensus Arrestin [Signal transduction mechanisms	88.06
PF13002	191	LDB19: Arrestin_N terminal like; InterPro: IPR0243	87.02

>KOG2717 consensus Uncharacterized conserved protein with similarity to embryogenesis protein H beta 58 and VPS26 [General function prediction only]

Probab=100.00  E-value=2.1e-75  Score=530.39  Aligned_cols=306  Identities=58%  Similarity=0.981  Sum_probs=281.5

Q ss_pred             EEEEEEcCCCCCcCCCCcEEEEEEEEeCCeEEEeEEEEEEEEEEEEEEecCccceEEEeecceeeEEEEeeeEEeeCCee
Q 018667           37 TVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRTSGR  116 (352)
Q Consensus        37 ~~~I~fd~~~~vY~~Ge~VsG~V~i~~~k~~~h~gI~i~~~G~a~~~ws~~s~g~~e~~~~~~~~~~~~~~~~~l~~~G~  116 (352)
                      .++|++.+++++|..||.+.|+|++.+...++|+||++.++|.+++|.+++++|.+|+||++.+|++++..++++..+|+
T Consensus         4 ~~~vkl~rsnriy~s~e~l~G~vvi~sa~s~~Hqgi~L~~eG~VNLQlsaksvGvfeaFYnsvKPIqiv~~tiE~~~pGK   83 (313)
T KOG2717|consen    4 TVNVKLSRSNRIYRSSEPLEGKVVIKSATSISHQGIRLSVEGSVNLQLSAKSVGVFEAFYNSVKPIQIVKKTIEVKSPGK   83 (313)
T ss_pred             eEEEEEecccceeecCCccceeEEEEeccccccceEEEEEeeEEEEEEeccceeeeHHhhccccchhhhhceEEEecCCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCceEEeeEEEcCCCCCccccccccceEEeeEEEEEEEEEEEEecccCCCcceEEEEEEEEcCccccCCCCCCceEEE
Q 018667          117 IGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYLVTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVF  196 (352)
Q Consensus       117 L~~G~~~fpF~F~Lp~~~~~~~~~l~eSy~G~~g~IrY~vkv~I~Rp~~~~d~~~~~eF~V~~~~~~l~~~~~~p~pv~f  196 (352)
                      +|+|+++|||+|+|-..+  ..+++||+|||++.+|+|.++|+|+|+++.|++++.++|.|++.+.++.+.  +|++|.|
T Consensus        84 ~p~G~tEipFelpL~~kg--e~~~lYETyHGvfiNiqY~LtcdikR~~L~K~ltkt~eFiv~s~pv~l~e~--~p~iV~F  159 (313)
T KOG2717|consen   84 IPPGTTEIPFELPLREKG--EGEKLYETYHGVFINIQYLLTCDIKRGYLHKPLTKTMEFIVESGPVDLPER--PPEIVIF  159 (313)
T ss_pred             CCCCceeeeeeeeeccCC--CccEeeeeecceEEEEEEEEEEecccchhcCchhhhheeeeccCCcccccC--CCcceEE
Confidence            999999999999998774  347899999999999999999999999999999999999999988877544  6799999


Q ss_pred             EecccccccccCCCccccceEEEEEEeee-EeCCCceEEEEEEEEeccCeEEEEEEEEEEEEEecCCceeEeeeEEEEEE
Q 018667          197 YITQDTQRHPLLPELKSGGFKVTGKMSTQ-CSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQ  275 (352)
Q Consensus       197 ~it~~~l~~~~~~~~~~~~f~I~~~~~~~-~~~~d~i~G~i~~~~s~~~Ik~ielqLir~Et~~~~~~~~~e~t~I~~~e  275 (352)
                      .|+||++++......+.|+|+|.+++|.+ |++.||++|++++++++++|+|||+||+|+|||+|++++.+|+++||++|
T Consensus       160 ~itpdtlq~~~ker~~~p~FlvtG~Ld~t~c~~t~PltGeltVe~seaaI~Sie~qLvRVEtcgc~Egy~~dateIQsiQ  239 (313)
T KOG2717|consen  160 YITPDTLQHPLKERIKTPGFLVTGKLDATQCSLTDPLTGELTVEASEAAITSIEIQLVRVETCGCGEGYVTDATEIQSIQ  239 (313)
T ss_pred             EEChHHhhccchhhccCCceEEEeeecceeeEecCCccceEEEEeeccceeEEEEEEEEEEEeecccceecccceeeeEE
Confidence            99999999975567789999999999987 99999999999999999999999999999999999999999999999999


Q ss_pred             EEeCccccCeeEeEEEEcCCCCCCCccccCceEEEEEEEEEEEEcCCccccccCCCCCCcceeEEEeeecEEEEe
Q 018667          276 VADGDVCRNMTLPIYVILPRLLTCPTVLAGPFSVEFKVSVVISFRSELSKLHKKSDPTTPRLWLAMETLPLELVR  350 (352)
Q Consensus       276 I~dG~p~rg~~IPi~~~lp~l~~~PT~~~~~FsV~y~Lnlvvi~e~~~~~~~~~~~~~~~~~~~~t~~~pi~l~r  350 (352)
                      |+|||+||+.++||||.|||||+|||+.+++|+|+|++|+++.+.+|    +.+.++--.|++.++|-+|++|.|
T Consensus       240 IADGdVcr~l~lPIymvlPRLftCPtl~t~nFkvEFevni~v~fk~d----~~~~enf~~~L~r~~~~lp~~~~~  310 (313)
T KOG2717|consen  240 IADGDVCRNLTLPIYMVLPRLFTCPTLFTGNFKVEFEVNITVSFKSD----LAKAENFAPRLWRALERLPLELVR  310 (313)
T ss_pred             eccCccccCCceeEEEEechhhcCCceeccccEEEEEEEEEEEEccc----hhhccCCchHHHHhcCCCcHHHee
Confidence            99999999999999999999999999999999999999999999999    344444444444444444444444

>PF03643 Vps26: Vacuolar protein sorting-associated protein 26 ; InterPro: IPR005377 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules

Probab=100.00  E-value=2e-65  Score=486.99  Aligned_cols=262  Identities=33%  Similarity=0.564  Sum_probs=200.6

Q ss_pred             eeEEEEEeecCCce--EEEEEEcC----CCCCcCCCCcEEEEEEEEeC--CeEEEeEEEEEEEEEEEEEEecCccceEEE
Q 018667           23 RAFVLKLKLQIDMS--TVEIKLSR----SNRIYRPSEPLQGKIVIKSS--SSIFHYGIHLTVNGSANLQVRGGSAGVVES   94 (352)
Q Consensus        23 ~~~~~~~k~~~~m~--~~~I~fd~----~~~vY~~Ge~VsG~V~i~~~--k~~~h~gI~i~~~G~a~~~ws~~s~g~~e~   94 (352)
                      .+|.+++.|+++.+  ..+++-++    ..++|++||+|+|+|+|+..  ++++|+||+|++.|+            +|+
T Consensus         3 ~~~~i~i~l~~~~~rk~v~~~~~~~~~~~~~iY~~gE~V~G~V~I~~~~gk~~~H~GI~l~lvG~------------ie~   70 (275)
T PF03643_consen    3 PPCDIDIELDDEDSRKKVEVKTDDGKKEKNPIYSDGETVSGKVVITSKPGKSLEHQGIKLELVGQ------------IEA   70 (275)
T ss_dssp             TTEEEEEEETTCCCS-EEEEE-TTS-EEEEEEEETC--EEEEEEEEESSTS-EEES-EEEEEEEE------------EEE
T ss_pred             CceEEEEEECCCcccceEEEECCCCCEEEeceEcCCCEEEEEEEEEECCCCceEEeeEEEEEEEe------------EeE
Confidence            48999999988777  56666553    35699999999999999954  599999999999999            889


Q ss_pred             eecceeeEEEEeeeEEeeCCeeeCCCceEEeeEEEcCCCCCccccccccceEEeeEEEEEEEEEEEEecccCCCcceEEE
Q 018667           95 LYGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYLVTVDIMRGYLHKSLSATVE  174 (352)
Q Consensus        95 ~~~~~~~~~~~~~~~~l~~~G~L~~G~~~fpF~F~Lp~~~~~~~~~l~eSy~G~~g~IrY~vkv~I~Rp~~~~d~~~~~e  174 (352)
                      +|++.++++|++.+.+|+++|+|++|++ |||+|++-       ++.||||||++++|||+|||++.|+|  +|+++++|
T Consensus        71 ~~~~~k~~~f~~~~~eL~~~G~l~~~~t-~pFeF~~~-------~k~yETY~G~~v~i~Y~lrv~v~R~~--~~i~k~~e  140 (275)
T PF03643_consen   71 FYDSGKPIEFLSLSIELAPPGKLPEGKT-FPFEFPLV-------EKPYETYHGVNVNIRYFLRVTVKRSY--KDISKEQE  140 (275)
T ss_dssp             GCCTT-EEEEEEEEEEEE-SEEE-S-EE-EEEEE-SB----------S--EE-SSEEEEEEEEEEE--SS--S-EEEEEE
T ss_pred             eccCCCceEeEEeeEEEcCCcccCCCcE-EeeEeCCC-------CCCCccEeeeEEEEEEEEEEEEEccC--CCcceEEE
Confidence            9999999999999999999999999999 99999953       45799999999999999999999999  68999999


Q ss_pred             EEEEEcCccccCCCCCCceEEEEecccccccccCCCccccceEEEEEEeee-EeCCCceEEEEEEEEeccCeEEEEEEEE
Q 018667          175 FIVETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKSGGFKVTGKMSTQ-CSLLDPITGELTVEASSVPIHSIDIHLL  253 (352)
Q Consensus       175 F~V~~~~~~l~~~~~~p~pv~f~it~~~l~~~~~~~~~~~~f~I~~~~~~~-~~~~d~i~G~i~~~~s~~~Ik~ielqLi  253 (352)
                      |||++...       .|+.      .++++|+.+   -.+.+||++++++. ||++|+|+|+++|++++++|+||||||+
T Consensus       141 f~V~~~~~-------~p~~------~~~ik~evg---ie~~lhief~~~k~~~~l~d~i~G~i~f~lv~~kIk~~elqLi  204 (275)
T PF03643_consen  141 FWVQNFSI-------TPES------NQPIKMEVG---IEDCLHIEFEYDKSKYHLKDVITGKIYFLLVRIKIKSMELQLI  204 (275)
T ss_dssp             EEEE-EB---------------------EEEEEC---ETTTEEEEEEES-SEEETT-EEEEEEEEEEESS-EEEEEEEEE
T ss_pred             EEEEeccC-------CCCC------CCCcccccC---CCccEEEEEEEcccceECCCCEEEEEEEEEEeecceEEEEEEE
Confidence            99986521       1111      123445432   12348999999987 9999999999999999999999999999


Q ss_pred             EEEEEecCCceeEeeeEEEEEEEEeCccccCeeEeEEEEcCCCCCCCccc--cCceEEEEEEEEEEEEcCC
Q 018667          254 RMESILLGEKIISETSLIQTTQVADGDVCRNMTLPIYVILPRLLTCPTVL--AGPFSVEFKVSVVISFRSE  322 (352)
Q Consensus       254 r~Et~~~~~~~~~e~t~I~~~eI~dG~p~rg~~IPi~~~lp~l~~~PT~~--~~~FsV~y~Lnlvvi~e~~  322 (352)
                      |+|||++++++++|+|+||++|||||+|+||++|||||+||++++|||+.  +++|||+|+|||+++||||
T Consensus       205 R~Et~g~~~~~~~e~t~i~~~eImDG~p~rge~IPirl~l~~l~l~Pt~~~~~~~FsV~y~lnlvlide~d  275 (275)
T PF03643_consen  205 RVETCGCGENYAKESTEIQKIEIMDGAPCRGESIPIRLFLPRLFLCPTYKNVNNKFSVEYELNLVLIDEDD  275 (275)
T ss_dssp             EEEEECECCCEEEEEEEEEEEEEESS---TT-EEEEEEECCCT-----EEEECTTEEEEEEEEEEEEETT-
T ss_pred             EEEEEecCCcccccceEEEEEEeecCCccccceeeEEEEcCCcccCCcchhcCCcEEEEEEEEEEEEcCCC
Confidence            99999999999999999999999999999999999999999999999995  7899999999999999986

Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35 []. This family of Vps26-proteins also contains Down syndrome critical region 3/A.; GO: 0007034 vacuolar transport, 0030904 retromer complex; PDB: 3LHA_A 3LH9_A 2R51_A 3LH8_B 2FAU_A.

>KOG3063 consensus Membrane coat complex Retromer, subunit VPS26 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.3e-62  Score=444.47  Aligned_cols=275  Identities=19%  Similarity=0.376  Sum_probs=250.2

Q ss_pred             eeEEEEEeecCCce--EEEEEEcCC----CCCcCCCCcEEEEEEEE--eCCeEEEeEEEEEEEEEEEEEEecCccceEEE
Q 018667           23 RAFVLKLKLQIDMS--TVEIKLSRS----NRIYRPSEPLQGKIVIK--SSSSIFHYGIHLTVNGSANLQVRGGSAGVVES   94 (352)
Q Consensus        23 ~~~~~~~k~~~~m~--~~~I~fd~~----~~vY~~Ge~VsG~V~i~--~~k~~~h~gI~i~~~G~a~~~ws~~s~g~~e~   94 (352)
                      .+|.+++.++++-+  .++++.++.    .++|++||+|+|+|.++  .+++++|+||+|++.|+            +|.
T Consensus        10 ~~~di~i~~~~~e~Rk~v~~k~e~g~~e~~~lf~dgEtv~G~V~l~lk~gkkleH~GikiefiGq------------Ie~   77 (301)
T KOG3063|consen   10 PSIDIEILFDNEESRKQVDMKTEDGKKEKHPLFYDGETVSGKVNLRLKDGKKLEHQGIKIEFIGQ------------IEM   77 (301)
T ss_pred             CCeeEEEEEcCchhheeccccccCCceeeeeeEecCCeeeeEEEEEEcCCcccccCceEEEEEEE------------EEE
Confidence            57889999988665  677777763    45999999999999999  58899999999999999            788


Q ss_pred             eecceeeEEEEeeeEEeeCCeeeCCCceEEeeEEEcCCCCCccccccccceEEeeEEEEEEEEEEEEecccCCCcceEEE
Q 018667           95 LYGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYLVTVDIMRGYLHKSLSATVE  174 (352)
Q Consensus        95 ~~~~~~~~~~~~~~~~l~~~G~L~~G~~~fpF~F~Lp~~~~~~~~~l~eSy~G~~g~IrY~vkv~I~Rp~~~~d~~~~~e  174 (352)
                      +|++++.++|.+...+|+.||.|.+.++ |||+|.       .+++.+|||.|+++++||++||++.|.+  +|++++++
T Consensus        78 ~~drgn~~eF~~lv~eLa~pGel~~~~~-fpFeF~-------~vekpyEsY~G~NV~lrY~lkvTv~Rr~--~di~ke~d  147 (301)
T KOG3063|consen   78 YYDRGNFHEFTSLVRELARPGELTQSQS-FPFEFP-------HVEKPYESYIGKNVRLRYFLKVTVSRRL--TDIVKEKD  147 (301)
T ss_pred             EecCCcHHHHHHHHHhhcCCcceeeccc-CCcccc-------ccccchhhhcCcceEEEEEEEEEEEech--hhhhhhhh
Confidence            9999999999999999999999999987 999999       7899999999999999999999999998  48999999


Q ss_pred             EEEEEcCccccCCCCCCceEEEEecccccccccCCCccccc-eEEEEEEeee-EeCCCceEEEEEEEEeccCeEEEEEEE
Q 018667          175 FIVETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKSGG-FKVTGKMSTQ-CSLLDPITGELTVEASSVPIHSIDIHL  252 (352)
Q Consensus       175 F~V~~~~~~l~~~~~~p~pv~f~it~~~l~~~~~~~~~~~~-f~I~~~~~~~-~~~~d~i~G~i~~~~s~~~Ik~ielqL  252 (352)
                      |||+....       +|..      +.+++|+.+    ... +||+.+.++. +|++|+|.|+|+|.+++++|++||++|
T Consensus       148 ~~V~~~~~-------~P~~------nn~IkmeVG----IedCLHIEFEYnKskYhLkdvIvGkIYFlLvRikIk~Mel~i  210 (301)
T KOG3063|consen  148 LVVHNLST-------YPEI------NNSIKMEVG----IEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIKHMELSI  210 (301)
T ss_pred             eeeEeccc-------CCCC------CCceeEeec----hhhceEEEEEecccccchhheEEeeEEEEEEEEEeeeeEEEE
Confidence            99998632       3333      557888753    333 7888888876 899999999999999999999999999


Q ss_pred             EEEEEEecCCceeEeeeEEEEEEEEeCccccCeeEeEEEEcCCCCCCCcc--ccCceEEEEEEEEEEEEcCCccccccCC
Q 018667          253 LRMESILLGEKIISETSLIQTTQVADGDVCRNMTLPIYVILPRLLTCPTV--LAGPFSVEFKVSVVISFRSELSKLHKKS  330 (352)
Q Consensus       253 ir~Et~~~~~~~~~e~t~I~~~eI~dG~p~rg~~IPi~~~lp~l~~~PT~--~~~~FsV~y~Lnlvvi~e~~~~~~~~~~  330 (352)
                      +|+|+.|.+++...++++|.++|||||+|+|||+|||||||.++++|||+  ++++|||+|+||||++||||        
T Consensus       211 ikrEstG~gpn~~~e~eTiakyeIMDGapvrGEsIPiRlFLagYdlTPtmrdinkkFsVkyyLnLVlvDeed--------  282 (301)
T KOG3063|consen  211 IKRESTGTGPNTYVETETIAKYEIMDGAPVRGESIPIRLFLAGYDLTPTMRDINKKFSVKYYLNLVLVDEED--------  282 (301)
T ss_pred             EEeecccCCCcceeccceeeeEEeccCCCcCCCeeeeEEEecccCCCcchhhhcceeeeeeEEEEEEEchhh--------
Confidence            99999999999999999999999999999999999999999999999999  79999999999999999999        


Q ss_pred             CCCCcceeEEEeeecEEEEec
Q 018667          331 DPTTPRLWLAMETLPLELVRT  351 (352)
Q Consensus       331 ~~~~~~~~~~t~~~pi~l~r~  351 (352)
                          ||||++.|   |.|||.
T Consensus       283 ----RRYFKQqE---ItLwR~  296 (301)
T KOG3063|consen  283 ----RRYFKQQE---ITLWRK  296 (301)
T ss_pred             ----hhhhhhee---EEEEEe
Confidence                99999999   999996

>KOG3780 consensus Thioredoxin binding protein TBP-2/VDUP1 [General function prediction only]

Probab=99.95  E-value=8.9e-26  Score=226.51  Aligned_cols=270  Identities=21%  Similarity=0.261  Sum_probs=196.1

Q ss_pred             ceEEEEEEcCCCCCcCCCCcEEEEEEEEeCCeEEEeEEEEEEEEEEEEEEecC-c--------cce---EEEeecceeeE
Q 018667           35 MSTVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGG-S--------AGV---VESLYGVIKPI  102 (352)
Q Consensus        35 m~~~~I~fd~~~~vY~~Ge~VsG~V~i~~~k~~~h~gI~i~~~G~a~~~ws~~-s--------~g~---~e~~~~~~~~~  102 (352)
                      |+.++|.||++..+|++||.|+|+|+++..+++++++|+|++.|.+++.|... +        .+.   ....|.  ...
T Consensus         4 ~~~~~i~~d~~~~iy~~G~~vsG~v~l~~~~~~~~~~i~l~~~G~~~t~w~~~~~~~~~~~~~~~~~~~~~~~~~--~~~   81 (427)
T KOG3780|consen    4 MSSFEIVLDNPEAIYFPGEPVSGSVVLSTKEPIKVRAIKLQLKGRARTSWSESERGTKLNSKSEGSIKSSTVNYT--AKE   81 (427)
T ss_pred             cceEEEEeCCCccccCCCCeEEEEEEEEeCCccceeEEEEEEEEeEEEeecccccccccccccccccccceEEee--ceE
Confidence            55799999999999999999999999999999999999999999999999732 1        110   111121  112


Q ss_pred             EEEeee--EEeeCCe--e--eCCCceEEeeEEEcCCCCCccccccccceEEeeEEEEEEEEEEEEecccCCCcceEEEEE
Q 018667          103 KILKKS--QEIRTSG--R--IGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYLVTVDIMRGYLHKSLSATVEFI  176 (352)
Q Consensus       103 ~~~~~~--~~l~~~G--~--L~~G~~~fpF~F~Lp~~~~~~~~~l~eSy~G~~g~IrY~vkv~I~Rp~~~~d~~~~~eF~  176 (352)
                      ++++..  .+...+|  .  |++|.|+|||+|+||.+       +|+||+|.+|+|||+|+|+++|+|+. +....+.|.
T Consensus        82 ~y~~~~~~~~~~~~g~~~~~l~~G~~~~pF~~~LP~~-------~P~Sfeg~~G~irY~vk~~idr~~~~-~~~~~~~~~  153 (427)
T KOG3780|consen   82 TYLDSKTILWTSSNGSNSRVLPPGNYEFPFSFTLPLN-------LPPSFEGKFGHVRYFVKAEIDRPWKL-NKKNRKPFT  153 (427)
T ss_pred             EEeeeeeEEeeccCCCCceecCCCceEEeEeccCCCC-------CCCceeeCCceEEEEEEEEEecCCCC-CccceeeEE
Confidence            333332  2223455  4  89999999999999976       89999999999999999999999985 688999999


Q ss_pred             EEEcCccccCCCCCCceEEEEecccccccccCCCccccceEEEEEEeee-EeCCCceEEEEEEE-EeccCeEEEEEEEEE
Q 018667          177 VETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKSGGFKVTGKMSTQ-CSLLDPITGELTVE-ASSVPIHSIDIHLLR  254 (352)
Q Consensus       177 V~~~~~~l~~~~~~p~pv~f~it~~~l~~~~~~~~~~~~f~I~~~~~~~-~~~~d~i~G~i~~~-~s~~~Ik~ielqLir  254 (352)
                      |... .+++..+....++...-    -++.....+..+.+.+++.+... +..++.+...+.++ .++..++.+++.|++
T Consensus       154 V~~~-~~ln~~p~~~~~~~~~~----~k~~~~~~~~~g~v~~~~~ip~~~~~~ge~i~~~~~i~n~ss~~~~~~~~~l~q  228 (427)
T KOG3780|consen  154 VIET-VDLNSSPSLLEPIISKA----SKKLGCVCFSSGPVSLELTIPKTGYVPGETIPVTLEIENKSSRTIKKVKAKLIQ  228 (427)
T ss_pred             Eecc-cccccCccccCcchhhh----hheeeEEEecCCcEEEEEEcccccCcCCccEEEEEEEecCCCCcceeeEEEEEE
Confidence            8765 23332222223322110    11211134457788899999987 88899999999999 469999999999999


Q ss_pred             EEEEecCCc----eeEeeeEEEEEEEEeCccc--cCeeEeEEEEcCCCCCCCcc--ccCceEEEEEEEEEEEEcC
Q 018667          255 MESILLGEK----IISETSLIQTTQVADGDVC--RNMTLPIYVILPRLLTCPTV--LAGPFSVEFKVSVVISFRS  321 (352)
Q Consensus       255 ~Et~~~~~~----~~~e~t~I~~~eI~dG~p~--rg~~IPi~~~lp~l~~~PT~--~~~~FsV~y~Lnlvvi~e~  321 (352)
                      +.++.....    ..+..+.......+.+.+.  ....+=..+-+|..  +||+  .+..++|+|+|.+.+....
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~iP~~--~Ps~~~~~~~i~v~y~l~v~~~~~~  301 (427)
T KOG3780|consen  229 KISYLAFSYGEHTKTKKSEKTLIKSRGSLEVAPRSEDKFEKELRIPPV--PPSILPDTPIIRVEYELKVTLKTSS  301 (427)
T ss_pred             EEEEEeecCCccccceeeeeEEeeeccccccCCCCccccceEEEcCCC--CCccCCCCceEEEEEEEEEEEecCc
Confidence            999997653    2333333333333344443  33444444568888  4777  4799999999999998875

>PF00339 Arrestin_N: Arrestin (or S-antigen), N-terminal domain; InterPro: IPR011021 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli

Probab=99.88  E-value=1e-23  Score=180.74  Aligned_cols=135  Identities=23%  Similarity=0.339  Sum_probs=89.5

Q ss_pred             EEEEEcCCCCCcCCCCcEEEEEEEEeCCeEEEeEEEEEEEEEEEEEEec-CccceEEEe--ecce---eeEEEEeeeEEe
Q 018667           38 VEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRG-GSAGVVESL--YGVI---KPIKILKKSQEI  111 (352)
Q Consensus        38 ~~I~fd~~~~vY~~Ge~VsG~V~i~~~k~~~h~gI~i~~~G~a~~~ws~-~s~g~~e~~--~~~~---~~~~~~~~~~~l  111 (352)
                      ++|.||++.++|++||.|+|+|.|...++++.++|+|++.|.+.+.|.. ...+.....  ....   ....+++....+
T Consensus         1 ~~I~ld~~~~~y~~Ge~I~G~V~l~~~~~~~i~~i~v~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (149)
T PF00339_consen    1 FEIELDNPKPVYFPGEVISGKVVLELSKPIKIKSIKVRLKGRAKTKWSESKSSGSTFRKQTTPKVQYSEKKEYFDHESQL   80 (149)
T ss_dssp             EEEEES-SEEEEESS--EEEEEEECTTT-TTTSEEEEEEEEEEEESSSSTTSTTCEEEEEEESTSSS-SSSSSSHHHHHH
T ss_pred             CEEEECCCCCEECCCCEEEEEEEEEECCccceeEEEEEEEEEEEEEecCCCcceeeeeeEEecccccccceeeccceeEe
Confidence            6899999999999999999999999999999999999999999999973 222211110  0000   011222222111


Q ss_pred             e----CCeeeCCCceEEeeEEEcCCCCCccccccccceEEeeEEEEEEEEEEEEecccCCCcceEEEEEEEEc
Q 018667          112 R----TSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYLVTVDIMRGYLHKSLSATVEFIVETD  180 (352)
Q Consensus       112 ~----~~G~L~~G~~~fpF~F~Lp~~~~~~~~~l~eSy~G~~g~IrY~vkv~I~Rp~~~~d~~~~~eF~V~~~  180 (352)
                      .    .++.|++|.|+|||+|+||.+       +|+||+|.+|+|+|.|+|.|+|||. .+...+++|+|..+
T Consensus        81 ~~~~~~~~~l~~G~~~fpF~f~LP~~-------lP~S~~~~~g~I~Y~l~a~l~~~~~-~~~~~~~~~~v~~~  145 (149)
T PF00339_consen   81 WGSEDGPNILPPGEYEFPFEFQLPSN-------LPSSFEGSHGSIRYKLKATLDRPGK-KDHKAKREFTVVEP  145 (149)
T ss_dssp             HHH--------C-TTEEEEEE---TT-------S--SEEEE-SEEEEEEEEEESSTTS-E--CGGEEEEEEEE
T ss_pred             eeeccceecccCCCEEEEEEEECCCC-------CCceEeccCcCEEEEEEEEEECCCC-CCcEEEEEEEEECc
Confidence            1    145899999999999999976       8999999999999999999999996 57999999999775

The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The N-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....

>PF02752 Arrestin_C: Arrestin (or S-antigen), C-terminal domain; InterPro: IPR011022 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli

Probab=98.57  E-value=5.8e-06  Score=69.10  Aligned_cols=118  Identities=14%  Similarity=0.172  Sum_probs=76.7

Q ss_pred             cceEEEEEEeee-EeCCCceEEEEEEE-EeccCeEEEEEEEEEEEEEecCCc--eeEeeeEEEEEEEEeCccc--cCeeE
Q 018667          214 GGFKVTGKMSTQ-CSLLDPITGELTVE-ASSVPIHSIDIHLLRMESILLGEK--IISETSLIQTTQVADGDVC--RNMTL  287 (352)
Q Consensus       214 ~~f~I~~~~~~~-~~~~d~i~G~i~~~-~s~~~Ik~ielqLir~Et~~~~~~--~~~e~t~I~~~eI~dG~p~--rg~~I  287 (352)
                      +++++++.+++. |..+|.+...+.+. .+..+|+.|++.|+++.++....+  ..+..+.+..- ...+.+.  .+..+
T Consensus         3 g~i~~~~~i~~~~~~~Ge~i~v~v~i~n~s~~~i~~I~v~L~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~   81 (136)
T PF02752_consen    3 GKISLSISIPRTAYVPGETIPVNVEIDNQSKKKIKKIKVSLVERITYKAKGGKDESKSEKRVVAK-SKNCGVDPGSSGSF   81 (136)
T ss_dssp             EEEEEEEEES-SEEETT--EEEEEEEEE-SSSEEEEEEEEEEEEEEE-SS----S-EEEEEEEEE-EECCEB-B-TTEEE
T ss_pred             CEEEEEEEECCCEECCCCEEEEEEEEEECCCCEEEEEEEEEEEEEEEEEeeccccceEEEEEEEE-EecCCccCCCCceE
Confidence            567788999987 99999999999998 588999999999999999997653  32322333322 3333333  33333


Q ss_pred             e--EEEEcC-CCCCCCcc--ccCceEEEEEEEEEEEEc-CCccccccCCCCCCcceeEEEeeecEEEE
Q 018667          288 P--IYVILP-RLLTCPTV--LAGPFSVEFKVSVVISFR-SELSKLHKKSDPTTPRLWLAMETLPLELV  349 (352)
Q Consensus       288 P--i~~~lp-~l~~~PT~--~~~~FsV~y~Lnlvvi~e-~~~~~~~~~~~~~~~~~~~~t~~~pi~l~  349 (352)
                      -  +.|-+| .+  +||.  .++.++|+|+|.+.+.+. ..               .-+.-++||.|.
T Consensus        82 ~~~~~l~lP~~~--~~s~~~~~~~i~v~Y~l~v~~~~~~~~---------------~~~~~~~PI~I~  132 (136)
T PF02752_consen   82 EFNIQLQLPSNL--PPSTSTNSRLIQVEYQLEVTVKLSGCT---------------SDLRLELPITIG  132 (136)
T ss_dssp             EEEEEE-----B-------CGGGSEEEEEEEEEEEEEETTS---------------EEEEEEEEEEEE
T ss_pred             EEEEEEcCCCcc--CcccccCCcEEEEEEEEEEEEEECCce---------------eEEEEEccEEEE
Confidence            3  556778 66  7887  899999999999999998 34               678889999885

The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The C-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....

>PF08737 Rgp1: Rgp1; InterPro: IPR014848 Rgp1 forms heterodimer with Ric1 (IPR009771 from INTERPRO) which associates with Golgi membranes and functions as a guanyl-nucleotide exchange factor []

Probab=98.20  E-value=0.0004  Score=70.56  Aligned_cols=99  Identities=11%  Similarity=0.101  Sum_probs=66.9

Q ss_pred             EEEeee-EeCCCceEEEEEEEEec-cCeEEEEEEEEEEEEEecCC---ceeEee--eEEEEEEEEeCccccCeeEeEEEE
Q 018667          220 GKMSTQ-CSLLDPITGELTVEASS-VPIHSIDIHLLRMESILLGE---KIISET--SLIQTTQVADGDVCRNMTLPIYVI  292 (352)
Q Consensus       220 ~~~~~~-~~~~d~i~G~i~~~~s~-~~Ik~ielqLir~Et~~~~~---~~~~e~--t~I~~~eI~dG~p~rg~~IPi~~~  292 (352)
                      +.+.+. +.++|.|.|.+.|..+. .++..+-+.|-..|++...-   +..+..  +.-.-.+-.+-..-.-..+++.+-
T Consensus       308 ~~LsK~~yrlGE~I~g~idf~~~~~~~c~~v~~~LEs~E~v~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~f~l~  387 (415)
T PF08737_consen  308 LSLSKPAYRLGEDIVGTIDFNDASTIPCYQVSASLESEETVNPSYAVRSSAKINRVTRKVHAEHHEICLDSRSRTSFSLP  387 (415)
T ss_pred             EEecCCCcccCCeEEEEEEcCCCCcceeEEEEEEEEEEEEeCchhcccccccccccEEEEEEEEeeeecCCcceEEEEee
Confidence            333443 69999999999999888 99999999999999865321   001111  111111221111112225888887


Q ss_pred             cCCCCCCCccccCceEEEEEEEEEEEE
Q 018667          293 LPRLLTCPTVLAGPFSVEFKVSVVISF  319 (352)
Q Consensus       293 lp~l~~~PT~~~~~FsV~y~Lnlvvi~  319 (352)
                      +|.- .||+|.++.|+++|.|++-.+.
T Consensus       388 IP~~-~tp~F~T~~v~lkW~LrfeFv~  413 (415)
T PF08737_consen  388 IPLS-ATPQFQTSGVSLKWRLRFEFVT  413 (415)
T ss_pred             CCCC-CCCceEeCCEEEEEEEEEEEEe
Confidence            7765 6799999999999999998765

>PF07070 Spo0M: SpoOM protein; InterPro: IPR009776 This family consists of several bacterial SpoOM proteins which are thought to control sporulation in Bacillus subtilis

Probab=98.16  E-value=0.00011  Score=68.43  Aligned_cols=124  Identities=18%  Similarity=0.167  Sum_probs=83.4

Q ss_pred             ecCCceEEEEEEcCCCCCcCCCCcEEEEEEEEeC-CeEEEeEEEEEEEEEEEEEEecCccceEEEeecceeeEEEEeeeE
Q 018667           31 LQIDMSTVEIKLSRSNRIYRPSEPLQGKIVIKSS-SSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQ  109 (352)
Q Consensus        31 ~~~~m~~~~I~fd~~~~vY~~Ge~VsG~V~i~~~-k~~~h~gI~i~~~G~a~~~ws~~s~g~~e~~~~~~~~~~~~~~~~  109 (352)
                      +-.|-++++-.|+++  .|.|||+|+|.|.|+.+ ..-++.+|.+.+.=.+...-..     -+ +   .....+  ...
T Consensus         8 ~GiG~akVDT~L~~~--~~~pGe~v~G~V~i~GG~v~Q~I~~I~l~L~t~~~~e~~d-----~~-~---~~~~~~--~~~   74 (218)
T PF07070_consen    8 IGIGGAKVDTVLEKP--SVRPGETVRGEVHIKGGSVDQEIDRIYLELVTRYEVESDD-----KE-Y---TQEVEL--ARV   74 (218)
T ss_pred             cCCCCceEEEEECCC--CccCCCEEEEEEEEEeCCcceEEeEEEEEEEEEEEEecCC-----Ce-E---EEEEEE--EEE
Confidence            334445788888765  69999999999999954 5778899999988775442110     00 0   011111  223


Q ss_pred             EeeCCeeeCCC-ceEEeeEEEcCCCCCccccccccceEEeeEEEEEEEEEEEEecccCCCcceEEEEEEEE
Q 018667          110 EIRTSGRIGSG-TTEVPFSMNLKQHGEENLERFYETFHGADINIQYLVTVDIMRGYLHKSLSATVEFIVET  179 (352)
Q Consensus       110 ~l~~~G~L~~G-~~~fpF~F~Lp~~~~~~~~~l~eSy~G~~g~IrY~vkv~I~Rp~~~~d~~~~~eF~V~~  179 (352)
                      .++.+-.|.+| ++++||+|+||-+       .|-|-    +..+|+++-.++=.+. .|-...-.+.|+.
T Consensus        75 ~v~~~f~I~~ge~~~iPF~~~lP~e-------tPiT~----~~~~v~l~T~LdI~~a-vD~~D~D~i~V~P  133 (218)
T PF07070_consen   75 RVSGPFTIEPGEEKEIPFSFPLPWE-------TPITE----GGMRVWLRTGLDIAGA-VDPGDLDPIEVEP  133 (218)
T ss_pred             EeCCCEEECCCCEEEEeEEEECCCC-------CCccC----CCcEEEEEEEEEeCCC-CCCCCceeEEEeC
Confidence            55566677666 6789999999966       34444    5789999988887775 3666666666643

Spo0M exerts certain negative effects on sporulation and its gene expression is controlled by sigmaH [].

>PF02752 Arrestin_C: Arrestin (or S-antigen), C-terminal domain; InterPro: IPR011022 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli

Probab=98.14  E-value=0.0001  Score=61.54  Aligned_cols=124  Identities=14%  Similarity=0.226  Sum_probs=68.9

Q ss_pred             EEEEEEcCCCCCcCCCCcEEEEEEEEeCCeEEEeEEEEEEEEEEEEEEecCccceEEEeecceeeEEEEeeeEEeeCCee
Q 018667           37 TVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRTSGR  116 (352)
Q Consensus        37 ~~~I~fd~~~~vY~~Ge~VsG~V~i~~~k~~~h~gI~i~~~G~a~~~ws~~s~g~~e~~~~~~~~~~~~~~~~~l~~~G~  116 (352)
                      .+.+.+++  ..|.+||.+.-.+.|.+.+..+.++|++.+.-.....-...  . .    +.......+..   ....+.
T Consensus         6 ~~~~~i~~--~~~~~Ge~i~v~v~i~n~s~~~i~~I~v~L~~~~~~~~~~~--~-~----~~~~~~~~v~~---~~~~~~   73 (136)
T PF02752_consen    6 SLSISIPR--TAYVPGETIPVNVEIDNQSKKKIKKIKVSLVERITYKAKGG--K-D----ESKSEKRVVAK---SKNCGV   73 (136)
T ss_dssp             EEEEEES---SEEETT--EEEEEEEEE-SSSEEEEEEEEEEEEEEE-SS-----------S-EEEEEEEEE---EECCEB
T ss_pred             EEEEEECC--CEECCCCEEEEEEEEEECCCCEEEEEEEEEEEEEEEEEeec--c-c----cceEEEEEEEE---EecCCc
Confidence            45666655  47999999999999999999999999999999864421100  0 0    00011111111   112222


Q ss_pred             eCCCceEEe--eEEEcCCCCCccccccccce--EEeeEEEEEEEEEEEEecccCCCcceEEEEEEEE
Q 018667          117 IGSGTTEVP--FSMNLKQHGEENLERFYETF--HGADINIQYLVTVDIMRGYLHKSLSATVEFIVET  179 (352)
Q Consensus       117 L~~G~~~fp--F~F~Lp~~~~~~~~~l~eSy--~G~~g~IrY~vkv~I~Rp~~~~d~~~~~eF~V~~  179 (352)
                      .+.+...|-  ..|.||++       +++|.  .|...+|.|.|++++.-+....++..+.+.++..
T Consensus        74 ~~~~~~~~~~~~~l~lP~~-------~~~s~~~~~~~i~v~Y~l~v~~~~~~~~~~~~~~~PI~I~~  133 (136)
T PF02752_consen   74 DPGSSGSFEFNIQLQLPSN-------LPPSTSTNSRLIQVEYQLEVTVKLSGCTSDLRLELPITIGS  133 (136)
T ss_dssp             -B-TTEEEEEEEEE------------B-----CGGGSEEEEEEEEEEEEEETTSEEEEEEEEEEEEB
T ss_pred             cCCCCceEEEEEEEcCCCc-------cCcccccCCcEEEEEEEEEEEEEECCceeEEEEEccEEEEe
Confidence            233444455  77888754       55566  8999999999999998774334566666666543

The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The C-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....

>KOG3865 consensus Arrestin [Signal transduction mechanisms]

Probab=97.57  E-value=0.0068  Score=58.90  Aligned_cols=198  Identities=17%  Similarity=0.221  Sum_probs=117.7

Q ss_pred             CceEEeeEEEcCCCCCcccc---ccccceEEeeEEEEEEEEEEEEecccCCCcc-eEEEEEE---EEcCccccCCCCCCc
Q 018667          120 GTTEVPFSMNLKQHGEENLE---RFYETFHGADINIQYLVTVDIMRGYLHKSLS-ATVEFIV---ETDKADLLERPVSPE  192 (352)
Q Consensus       120 G~~~fpF~F~Lp~~~~~~~~---~l~eSy~G~~g~IrY~vkv~I~Rp~~~~d~~-~~~eF~V---~~~~~~l~~~~~~p~  192 (352)
                      |.+.|||.|+.|+++  +..   +.-+.=.|+---|.|.||+-+--.---+.+. ......+   +..+.     ...|.
T Consensus       107 G~nAyPF~f~~pp~~--P~SVtLQp~p~D~gKpcGVdyevkaF~~~s~edk~hKr~sVrL~IRKvqyAP~-----~~Gpq  179 (402)
T KOG3865|consen  107 GSNAYPFTFEFPPNL--PCSVTLQPGPEDTGKPCGVDYEVKAFVADSEEDKIHKRNSVRLVIRKVQYAPL-----EPGPQ  179 (402)
T ss_pred             CCCCCceEEeCCCCC--CceEEeccCCccCCCcccceEEEEEEecCCcccccccccceeeeeeeeeecCC-----CCCCC
Confidence            667799999999872  111   1223457888889999999884332111111 1112222   22111     11122


Q ss_pred             eEEEEecccccccccCCCccccceEEEEEEeee-EeCCCceEEEEEEE-EeccCeEEEEEEEEEEEEE-ecC-CceeEee
Q 018667          193 MVVFYITQDTQRHPLLPELKSGGFKVTGKMSTQ-CSLLDPITGELTVE-ASSVPIHSIDIHLLRMESI-LLG-EKIISET  268 (352)
Q Consensus       193 pv~f~it~~~l~~~~~~~~~~~~f~I~~~~~~~-~~~~d~i~G~i~~~-~s~~~Ik~ielqLir~Et~-~~~-~~~~~e~  268 (352)
                      |        +.+-...-.++.++++++..+++- ++-+++|.-.+++. +++..+|.|++.+.+...+ .-. ..|   .
T Consensus       180 P--------~~~v~k~FlmS~~~lhLevsLDkEiYyHGE~isvnV~V~NNsnKtVKkIK~~V~Q~adi~Lfs~aqy---~  248 (402)
T KOG3865|consen  180 P--------SAEVSKQFLMSDGPLHLEVSLDKEIYYHGEPISVNVHVTNNSNKTVKKIKISVRQVADICLFSTAQY---K  248 (402)
T ss_pred             c--------hhHhhHhhccCCCceEEEEEecchheecCCceeEEEEEecCCcceeeeeEEEeEeeceEEEEecccc---c
Confidence            2        111111112356789999999997 67799999999999 6899999999998887633 322 233   4


Q ss_pred             eEEEEEEEEeCccc-cCeeEeEEEEcCCC----------C------------CCCcc-------ccCceEEEEEEEEEEE
Q 018667          269 SLIQTTQVADGDVC-RNMTLPIYVILPRL----------L------------TCPTV-------LAGPFSVEFKVSVVIS  318 (352)
Q Consensus       269 t~I~~~eI~dG~p~-rg~~IPi~~~lp~l----------~------------~~PT~-------~~~~FsV~y~Lnlvvi  318 (352)
                      .++...|--||+++ +|.+.-=-++|=++          +            .+.|.       ..=-+=|+|.+.+-+.
T Consensus       249 ~~VA~~E~~eGc~v~Pgstl~Kvf~l~PllanN~dkrGlALDG~lKhEDtnLASSTii~~~~~re~lGI~VsY~VkVkL~  328 (402)
T KOG3865|consen  249 KPVAMEETDEGCPVAPGSTLSKVFTLTPLLANNKDKRGLALDGKLKHEDTNLASSTIIREGADREALGILVSYKVKVKLV  328 (402)
T ss_pred             ceeeeeecccCCccCCCCeeeeeEEechhhhcCcccccccccccccccccccchhheecCCCCcceeEEEEEEEEEEEEE
Confidence            57888888898665 66664433333111          0            01122       1123568888888887


Q ss_pred             EcC---CccccccCCCCCCcceeEEEeeecEEEEec
Q 018667          319 FRS---ELSKLHKKSDPTTPRLWLAMETLPLELVRT  351 (352)
Q Consensus       319 ~e~---~~~~~~~~~~~~~~~~~~~t~~~pi~l~r~  351 (352)
                      ...   |               -+.+| +|..|.+.
T Consensus       329 vs~ll~g---------------e~~~E-lPF~LmhP  348 (402)
T KOG3865|consen  329 VSRLLGG---------------EVAAE-LPFTLMHP  348 (402)
T ss_pred             EecccCC---------------ceeee-cceEEecC
Confidence            763   5               56666 78887653

>PF00339 Arrestin_N: Arrestin (or S-antigen), N-terminal domain; InterPro: IPR011021 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli

Probab=97.03  E-value=0.0053  Score=52.07  Aligned_cols=113  Identities=19%  Similarity=0.224  Sum_probs=67.3

Q ss_pred             EeCCCceEEEEEEE-EeccCeEEEEEEEEEEEEEecCCceeEeeeEEE---------------EE--EE-----EeCccc
Q 018667          226 CSLLDPITGELTVE-ASSVPIHSIDIHLLRMESILLGEKIISETSLIQ---------------TT--QV-----ADGDVC  282 (352)
Q Consensus       226 ~~~~d~i~G~i~~~-~s~~~Ik~ielqLir~Et~~~~~~~~~e~t~I~---------------~~--eI-----~dG~p~  282 (352)
                      |..+|.|.|.|.+. ...+++++|.++|.=++.+..........+...               +.  .+     ..+...
T Consensus        12 y~~Ge~I~G~V~l~~~~~~~i~~i~v~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~   91 (149)
T PF00339_consen   12 YFPGEVISGKVVLELSKPIKIKSIKVRLKGRAKTKWSESKSSGSTFRKQTTPKVQYSEKKEYFDHESQLWGSEDGPNILP   91 (149)
T ss_dssp             EESS--EEEEEEECTTT-TTTSEEEEEEEEEEEESSSSTTSTTCEEEEEEESTSSS-SSSSSSHHHHHHHHH--------
T ss_pred             ECCCCEEEEEEEEEECCccceeEEEEEEEEEEEEEecCCCcceeeeeeEEecccccccceeeccceeEeeeeccceeccc
Confidence            89999999999998 456999999999999997776532111111110               00  01     112222


Q ss_pred             cC-eeEeEEEEcCCCCCCCccccCceEEEEEEEEEEEEcCCccccccCCCCCCcceeEEEeeecE
Q 018667          283 RN-MTLPIYVILPRLLTCPTVLAGPFSVEFKVSVVISFRSELSKLHKKSDPTTPRLWLAMETLPL  346 (352)
Q Consensus       283 rg-~~IPi~~~lp~l~~~PT~~~~~FsV~y~Lnlvvi~e~~~~~~~~~~~~~~~~~~~~t~~~pi  346 (352)
                      .| -..||.+.||.- ++||+....-+|.|.|...+ +..      ...+...+|.+.+.+.+++
T Consensus        92 ~G~~~fpF~f~LP~~-lP~S~~~~~g~I~Y~l~a~l-~~~------~~~~~~~~~~~~v~~~id~  148 (149)
T PF00339_consen   92 PGEYEFPFEFQLPSN-LPSSFEGSHGSIRYKLKATL-DRP------GKKDHKAKREFTVVEPIDL  148 (149)
T ss_dssp             C-TTEEEEEE---TT-S--SEEEE-SEEEEEEEEEE-SST------TSE--CGGEEEEEEEEEEB
T ss_pred             CCCEEEEEEEECCCC-CCceEeccCcCEEEEEEEEE-ECC------CCCCcEEEEEEEEECcccC
Confidence            44 459999999954 58888666669999999999 222      3567778888998887654

The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The N-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....

>PF13002 LDB19: Arrestin_N terminal like; InterPro: IPR024391 This entry represents a predicted Ig-like beta sandwich domain found towards the N terminus of protein LDB19 []

Probab=96.97  E-value=0.0024  Score=58.19  Aligned_cols=45  Identities=16%  Similarity=0.338  Sum_probs=40.1

Q ss_pred             eeCCeeeCCCceEEeeEEEcCCCCCccccccccceE---EeeEEEEEEEEEEEEe
Q 018667          111 IRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFH---GADINIQYLVTVDIMR  162 (352)
Q Consensus       111 l~~~G~L~~G~~~fpF~F~Lp~~~~~~~~~l~eSy~---G~~g~IrY~vkv~I~R  162 (352)
                      ++.+-.|..|.|.|||++.||.+       +|.|-.   +..++|.|.++|+..-
T Consensus        41 l~~~t~l~~G~h~fPFS~LiPG~-------LPaS~~lgs~~l~~I~Yel~A~a~~   88 (191)
T PF13002_consen   41 LTHPTTLTKGSHAFPFSYLIPGH-------LPASMDLGSTPLVSIKYELKAEATY   88 (191)
T ss_pred             ecCccccCCCcccCCeeEECCCC-------CccccccCCCCcEEEEEEEEEEEEE
Confidence            45566799999999999999976       999999   8999999999999966

It is also found in other sequences and is related to the arrestin N-terminal fold [].

>PF07070 Spo0M: SpoOM protein; InterPro: IPR009776 This family consists of several bacterial SpoOM proteins which are thought to control sporulation in Bacillus subtilis

Probab=96.28  E-value=0.28  Score=45.79  Aligned_cols=106  Identities=15%  Similarity=0.217  Sum_probs=77.4

Q ss_pred             cccceEEEEEEeee-EeCCCceEEEEEEE--EeccCeEEEEEEEEEEEEEecCCceeEeeeEEEEEEEEeC-ccccCee-
Q 018667          212 KSGGFKVTGKMSTQ-CSLLDPITGELTVE--ASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQVADG-DVCRNMT-  286 (352)
Q Consensus       212 ~~~~f~I~~~~~~~-~~~~d~i~G~i~~~--~s~~~Ik~ielqLir~Et~~~~~~~~~e~t~I~~~eI~dG-~p~rg~~-  286 (352)
                      +.+.-+|.-.+... +..++.+.|.+++.  .++-+|.+|++.|+.+-....+++..+..-++.++++.++ .+..|+. 
T Consensus         9 GiG~akVDT~L~~~~~~pGe~v~G~V~i~GG~v~Q~I~~I~l~L~t~~~~e~~d~~~~~~~~~~~~~v~~~f~I~~ge~~   88 (218)
T PF07070_consen    9 GIGGAKVDTVLEKPSVRPGETVRGEVHIKGGSVDQEIDRIYLELVTRYEVESDDKEYTQEVELARVRVSGPFTIEPGEEK   88 (218)
T ss_pred             CCCCceEEEEECCCCccCCCEEEEEEEEEeCCcceEEeEEEEEEEEEEEEecCCCeEEEEEEEEEEEeCCCEEECCCCEE
Confidence            34556677777765 89999999999999  6899999999999987666656666666778999999998 4446665 


Q ss_pred             -EeEEEEcCCCCCCCccccCceEEEEEEEEEEEEcCC
Q 018667          287 -LPIYVILPRLLTCPTVLAGPFSVEFKVSVVISFRSE  322 (352)
Q Consensus       287 -IPi~~~lp~l~~~PT~~~~~FsV~y~Lnlvvi~e~~  322 (352)
                       |||.+-||.-  +|-.. +  .+.|.|.--+....+
T Consensus        89 ~iPF~~~lP~e--tPiT~-~--~~~v~l~T~LdI~~a  120 (218)
T PF07070_consen   89 EIPFSFPLPWE--TPITE-G--GMRVWLRTGLDIAGA  120 (218)
T ss_pred             EEeEEEECCCC--CCccC-C--CcEEEEEEEEEeCCC
Confidence             9999999876  55222 2  344555544444443

Spo0M exerts certain negative effects on sporulation and its gene expression is controlled by sigmaH [].

>PF03643 Vps26: Vacuolar protein sorting-associated protein 26 ; InterPro: IPR005377 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules

Probab=95.07  E-value=0.47  Score=45.86  Aligned_cols=115  Identities=16%  Similarity=0.260  Sum_probs=60.2

Q ss_pred             eEEEEEeecCCceEEEEEEcCCCCCcCCCCcEEEEEEEEeCCeEEEeEEEEEEEEEEEEEEecCccceEEEeecceeeEE
Q 018667           24 AFVLKLKLQIDMSTVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIK  103 (352)
Q Consensus        24 ~~~~~~k~~~~m~~~~I~fd~~~~vY~~Ge~VsG~V~i~~~k~~~h~gI~i~~~G~a~~~ws~~s~g~~e~~~~~~~~~~  103 (352)
                      +..|+.-+++   .+.|+|.-....|.=.|.+.|+|.+...+ ++.+.+.|.+.=.-.+       |.-+.+....  ..
T Consensus       155 ~ik~evgie~---~lhief~~~k~~~~l~d~i~G~i~f~lv~-~kIk~~elqLiR~Et~-------g~~~~~~~e~--t~  221 (275)
T PF03643_consen  155 PIKMEVGIED---CLHIEFEYDKSKYHLKDVITGKIYFLLVR-IKIKSMELQLIRVETC-------GCGENYAKES--TE  221 (275)
T ss_dssp             -EEEEECETT---TEEEEEEES-SEEETT-EEEEEEEEEEES-S-EEEEEEEEEEEEEE-------CECCCEEEEE--EE
T ss_pred             CcccccCCCc---cEEEEEEEcccceECCCCEEEEEEEEEEe-ecceEEEEEEEEEEEE-------ecCCcccccc--eE
Confidence            3445554555   36666654555788899999999887432 4455555555444211       1111111100  11


Q ss_pred             EEeeeEEeeCCeeeCCCceEEeeEEEcCCCCCccccccccceEEee--EEEEEEEEEEEE
Q 018667          104 ILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGAD--INIQYLVTVDIM  161 (352)
Q Consensus       104 ~~~~~~~l~~~G~L~~G~~~fpF~F~Lp~~~~~~~~~l~eSy~G~~--g~IrY~vkv~I~  161 (352)
                      +.  ..++ -+|.--.|.. .||.+-||.-      .+.+||...+  .+|+|+|.+.+-
T Consensus       222 i~--~~eI-mDG~p~rge~-IPirl~l~~l------~l~Pt~~~~~~~FsV~y~lnlvli  271 (275)
T PF03643_consen  222 IQ--KIEI-MDGAPCRGES-IPIRLFLPRL------FLCPTYKNVNNKFSVEYELNLVLI  271 (275)
T ss_dssp             EE--EEEE-ESS---TT-E-EEEEEECCCT-----------EEEECTTEEEEEEEEEEEE
T ss_pred             EE--EEEe-ecCCccccce-eeEEEEcCCc------ccCCcchhcCCcEEEEEEEEEEEE
Confidence            11  1122 3566677877 9999999854      5899999665  999999998873

Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35 []. This family of Vps26-proteins also contains Down syndrome critical region 3/A.; GO: 0007034 vacuolar transport, 0030904 retromer complex; PDB: 3LHA_A 3LH9_A 2R51_A 3LH8_B 2FAU_A.

>PF04425 Bul1_N: Bul1 N terminus; InterPro: IPR007519 This domain is the N terminus of Saccharomyces cerevisiae (Baker's yeast) Bul1

Probab=94.54  E-value=0.12  Score=52.99  Aligned_cols=37  Identities=19%  Similarity=0.319  Sum_probs=33.5

Q ss_pred             CCCcCCCCcEEEEEEEE--eCCeEEEeEEEEEEEEEEEE
Q 018667           46 NRIYRPSEPLQGKIVIK--SSSSIFHYGIHLTVNGSANL   82 (352)
Q Consensus        46 ~~vY~~Ge~VsG~V~i~--~~k~~~h~gI~i~~~G~a~~   82 (352)
                      .+=|..||.|.|-|+|+  +.++++..=..|.++|.+.+
T Consensus       157 l~Ey~qGD~I~GyvtI~N~S~~pIpFdMFyV~lEG~~~v  195 (438)
T PF04425_consen  157 LKEYTQGDIIHGYVTIENTSSKPIPFDMFYVSLEGTISV  195 (438)
T ss_pred             cccccCCCEEEEEEEEEECCCCCcccceEEEEEEEEEEE
Confidence            34699999999999999  67899999999999999876

Bul1 binds the ubiquitin ligase Rsp5, via an N-terminal PPSY motif (157-160 in P48524 from SWISSPROT) []. The complex containing Bul1 and Rsp5 is involved in intracellular trafficking of the general amino acid permease Gap1 [], degradation of Rog1 in cooperation with Bul2 and GSK-3 [], and mitochondrial inheritance []. Bul1 may contain HEAT repeats. The C terminus is IPR007520 from INTERPRO.

>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white

Probab=94.27  E-value=1.1  Score=35.79  Aligned_cols=24  Identities=29%  Similarity=0.643  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCcCCCCcEEEEEEEEe
Q 018667           38 VEIKLSRSNRIYRPSEPLQGKIVIKS   63 (352)
Q Consensus        38 ~~I~fd~~~~vY~~Ge~VsG~V~i~~   63 (352)
                      +-|..|++  +|+|||+|.-++.+..
T Consensus         2 ~~i~TDr~--iYrPGetV~~~~~~~~   25 (99)
T PF01835_consen    2 IFIQTDRP--IYRPGETVHFRAIVRD   25 (99)
T ss_dssp             EEEEESSS--EE-TTSEEEEEEEEEE
T ss_pred             EEEECCcc--CcCCCCEEEEEEEEec
Confidence            44666776  9999999999998873

A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....

>COG4326 Spo0M Sporulation control protein [General function prediction only]

Probab=93.98  E-value=0.16  Score=46.94  Aligned_cols=111  Identities=13%  Similarity=0.113  Sum_probs=58.5

Q ss_pred             CCcCCCCcEEEEEEEEeCC-eEEEeEEEEEEEEEEEEEEecCccceEEEeecceeeEEEEeeeEEeeCCeeeCCC-ceEE
Q 018667           47 RIYRPSEPLQGKIVIKSSS-SIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRTSGRIGSG-TTEV  124 (352)
Q Consensus        47 ~vY~~Ge~VsG~V~i~~~k-~~~h~gI~i~~~G~a~~~ws~~s~g~~e~~~~~~~~~~~~~~~~~l~~~G~L~~G-~~~f  124 (352)
                      .+|+||+.|.|.|.|..++ .-.++.|.+++.-+-...... +.|.-+        -.+.+-  .+...=++.+| ++.|
T Consensus        42 ~~~~PG~~v~g~vhv~GG~~AQdI~~I~LkL~t~Y~~evdD-e~~~~~--------~t~~n~--rl~~~fTIqpgEe~~f  110 (270)
T COG4326          42 EVLYPGQSVKGIVHVYGGATAQDIDNIELKLCTCYIAEVDD-ERGQQQ--------GTLANW--RLPYAFTIQPGEERNF  110 (270)
T ss_pred             ccccCCceEEEEEEEecCchHhhhhhhhhhheeeEEEEecc-ccceeE--------EEEEEE--eecceEEecCCceEec
Confidence            4799999999999999443 444556666655442211111 111000        011110  11111145444 7889


Q ss_pred             eeEEEcCCCCCccccccccceEEeeEEEEEEEEEEEEecccCCCcceEEEEEEEEc
Q 018667          125 PFSMNLKQHGEENLERFYETFHGADINIQYLVTVDIMRGYLHKSLSATVEFIVETD  180 (352)
Q Consensus       125 pF~F~Lp~~~~~~~~~l~eSy~G~~g~IrY~vkv~I~Rp~~~~d~~~~~eF~V~~~  180 (352)
                      ||+|.||-+       .|=|+    |++.-+|+--+|-...- |-+.+--.+|..+
T Consensus       111 pf~l~lP~~-------tPvT~----G~~~V~v~TgLDI~~ai-dp~D~D~l~Vr~h  154 (270)
T COG4326         111 PFELSLPWN-------TPVTI----GDAKVWVETGLDIALAI-DPTDKDILTVRPH  154 (270)
T ss_pred             cEEEecCCC-------Cceee----cceeEEEEeccchhccC-CCcccceEEEecc
Confidence            999999976       34443    56666665555544432 3444444555433

>PF08737 Rgp1: Rgp1; InterPro: IPR014848 Rgp1 forms heterodimer with Ric1 (IPR009771 from INTERPRO) which associates with Golgi membranes and functions as a guanyl-nucleotide exchange factor []

Probab=88.81  E-value=6.2  Score=40.32  Aligned_cols=119  Identities=13%  Similarity=0.240  Sum_probs=71.6

Q ss_pred             eEEEEEeecCCceEEEEEEcCCCCCcCCCCcEEEEEEEEeCCeEEEeEEEEEEEEEEEEEEecCccceEEEeecceeeEE
Q 018667           24 AFVLKLKLQIDMSTVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIK  103 (352)
Q Consensus        24 ~~~~~~k~~~~m~~~~I~fd~~~~vY~~Ge~VsG~V~i~~~k~~~h~gI~i~~~G~a~~~ws~~s~g~~e~~~~~~~~~~  103 (352)
                      +...++...... -..+.|.+  +.|+-||+|.|.+.++....+++.++.+.++-.-.+.-..+-.+.. .. .+ -...
T Consensus       293 ~~~y~I~~n~~~-va~~~LsK--~~yrlGE~I~g~idf~~~~~~~c~~v~~~LEs~E~v~~~~~~~~~~-~~-~~-~~~~  366 (415)
T PF08737_consen  293 PNSYNIRRNGQR-VARLSLSK--PAYRLGEDIVGTIDFNDASTIPCYQVSASLESEETVNPSYAVRSSA-KI-NR-VTRK  366 (415)
T ss_pred             CcEEEEEECCeE-EEEEEecC--CCcccCCeEEEEEEcCCCCcceeEEEEEEEEEEEEeCchhcccccc-cc-cc-cEEE
Confidence            344455554432 35555544  4899999999999999766788999988888875542110000000 00 00 0011


Q ss_pred             EEeeeEEeeCCeeeCCCce-EEeeEEEcCCCCCccccccccceEEeeEEEEEEEEEEEE
Q 018667          104 ILKKSQEIRTSGRIGSGTT-EVPFSMNLKQHGEENLERFYETFHGADINIQYLVTVDIM  161 (352)
Q Consensus       104 ~~~~~~~l~~~G~L~~G~~-~fpF~F~Lp~~~~~~~~~l~eSy~G~~g~IrY~vkv~I~  161 (352)
                      .+...-+.      ..+.. .-+|.+.+|.+       .+++|.-..+.++|.|+.+.-
T Consensus       367 ~~~~~~e~------~~~~~~~~~f~l~IP~~-------~tp~F~T~~v~lkW~LrfeFv  412 (415)
T PF08737_consen  367 VHAEHHEI------CLDSRSRTSFSLPIPLS-------ATPQFQTSGVSLKWRLRFEFV  412 (415)
T ss_pred             EEEEEeee------ecCCcceEEEEeeCCCC-------CCCceEeCCEEEEEEEEEEEE
Confidence            12221122      11222 46899999977       678999999999999998764

>KOG3865 consensus Arrestin [Signal transduction mechanisms]

Probab=88.06  E-value=15  Score=36.27  Aligned_cols=46  Identities=22%  Similarity=0.391  Sum_probs=40.5

Q ss_pred             EEEEEEcCCCCCcCCCCcEEEEEEEEeCCeEEEeEEEEEEEEEEEEEE
Q 018667           37 TVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQV   84 (352)
Q Consensus        37 ~~~I~fd~~~~vY~~Ge~VsG~V~i~~~k~~~h~gI~i~~~G~a~~~w   84 (352)
                      .+++.+|+.  +|+-||.++-.|.|+++.....+.|++.+.-.|.+..
T Consensus       196 hLevsLDkE--iYyHGE~isvnV~V~NNsnKtVKkIK~~V~Q~adi~L  241 (402)
T KOG3865|consen  196 HLEVSLDKE--IYYHGEPISVNVHVTNNSNKTVKKIKISVRQVADICL  241 (402)
T ss_pred             EEEEEecch--heecCCceeEEEEEecCCcceeeeeEEEeEeeceEEE
Confidence            577888776  8999999999999998888889999999998888764

>PF13002 LDB19: Arrestin_N terminal like; InterPro: IPR024391 This entry represents a predicted Ig-like beta sandwich domain found towards the N terminus of protein LDB19 []

Probab=87.02  E-value=9.2  Score=35.06  Aligned_cols=96  Identities=8%  Similarity=0.181  Sum_probs=66.7

Q ss_pred             EEEEEEEEEEecC-----------CceeEeeeEEEEEEEEeCcc--ccCee-EeEEEEcCCCCCCCccc---cCceEEEE
Q 018667          249 DIHLLRMESILLG-----------EKIISETSLIQTTQVADGDV--CRNMT-LPIYVILPRLLTCPTVL---AGPFSVEF  311 (352)
Q Consensus       249 elqLir~Et~~~~-----------~~~~~e~t~I~~~eI~dG~p--~rg~~-IPi~~~lp~l~~~PT~~---~~~FsV~y  311 (352)
                      .|+|++.-++.-.           ..-....+++++.++....-  .+|.- -||-..||+- ++||+.   +..-+|+|
T Consensus         2 ~l~l~~~v~~~KPf~~~~~~~~~C~~C~~~~~eL~~W~~l~~~t~l~~G~h~fPFS~LiPG~-LPaS~~lgs~~l~~I~Y   80 (191)
T PF13002_consen    2 TLSLIQKVTYKKPFVPPSPVISHCADCKTQTTELKRWDFLTHPTTLTKGSHAFPFSYLIPGH-LPASMDLGSTPLVSIKY   80 (191)
T ss_pred             eEEEEEEEeecCCCCCCChhhCcChhHhccceeeeecceecCccccCCCcccCCeeEECCCC-CccccccCCCCcEEEEE
Confidence            4666666655432           01233468899999998854  36654 9999999987 788887   99999999


Q ss_pred             EEEEEEEEcCCccccccCCCCCCcceeEEEeeecEEEEec
Q 018667          312 KVSVVISFRSELSKLHKKSDPTTPRLWLAMETLPLELVRT  351 (352)
Q Consensus       312 ~Lnlvvi~e~~~~~~~~~~~~~~~~~~~~t~~~pi~l~r~  351 (352)
                      +|.-.+...+.  +    .++.+.+...+.-+.||.+-|.
T Consensus        81 el~A~a~~~~~--~----~~~~~~~~~~~~~~~pl~V~Rs  114 (191)
T PF13002_consen   81 ELKAEATYKDP--R----RGSSSSKPRVLKLKRPLPVKRS  114 (191)
T ss_pred             EEEEEEEEccC--c----cccCCCcceeEEEeeeEEEEEe
Confidence            99999999543  0    0112222356777788888885

It is also found in other sequences and is related to the arrestin N-terminal fold [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	352
2fau_A	341	Vacuolar protein sorting 26; arrestin, retromer, p	2e-48
2r51_A	340	Vacuolar protein sorting-associated protein 26B; r	3e-48
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06

>2fau_A Vacuolar protein sorting 26; arrestin, retromer, protein transport; HET: CAF; 2.10A {Homo sapiens} Length = 341

 Score =  165 bits (419), Expect = 2e-48
 Identities = 48/293 (16%), Positives = 103/293 (35%), Gaps = 48/293 (16%)

Query: 37  TVEIKLSRSNR----IYRPSEPLQGKIVI---KSSSSIFHYGIHLTVNGSANLQVRGGSA 89
             E+K          ++   E + GK+ +   +    + H GI +   G           
Sbjct: 28  MAEMKTEDGKVEKHYLFYDGESVSGKVNLAFKQPGKRLEHQGIRIEFVGQ---------- 77

Query: 90  GVVESLYGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGAD 149
             +E         + +   +E+   G +    +   F           +E+ YE++ GA+
Sbjct: 78  --IELFNDKSNTHEFVNLVKELALPGELTQSRS-YDFEFM-------QVEKPYESYIGAN 127

Query: 150 INIQYLVTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDTQRHPLLP 209
           + ++Y + V I+R      L    + IV                       D      + 
Sbjct: 128 VRLRYFLKVTIVRRL--TDLVKEYDLIVHQ----------------LATYPDVNNSIKME 169

Query: 210 ELKSGGFKVTGK-MSTQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISET 268
                   +  +   ++  L D I G++      + I  +++ L++ E   +G    +ET
Sbjct: 170 VGIEDXLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIQHMELQLIKKEITGIGPSTTTET 229

Query: 269 SLIQTTQVADGDVCRNMTLPIYVILPRLLTCPTV--LAGPFSVEFKVSVVISF 319
             I   ++ DG   +  ++PI + L      PT+  +   FSV + +++V+  
Sbjct: 230 ETIAKYEIMDGAPVKGESIPIRLFLAGYDPTPTMRDVNKKFSVRYFLNLVLVD 282

>2r51_A Vacuolar protein sorting-associated protein 26B; retromer, fibronectin III, arrestin domain, membrane, phosphorylation, protein transport; 2.10A {Mus musculus} PDB: 3lh9_A 3lh8_A 3lha_A Length = 340

 Score =  165 bits (418), Expect = 3e-48
 Identities = 50/319 (15%), Positives = 112/319 (35%), Gaps = 57/319 (17%)

Query: 37  TVEIKLSRSNR----IYRPSEPLQGKIVIKS---SSSIFHYGIHLTVNGSANLQVRGGSA 89
             E K     +    ++   E + GK+ +     +  + H GI +   G           
Sbjct: 28  RAEHKTEDGKKEKYFLFYDGETVSGKVSLSLKNPNKRLEHQGIKIEFIGQ---------- 77

Query: 90  GVVESLYGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGAD 149
             +E  Y      + +   +++   G I        F          ++E+ YE++ G +
Sbjct: 78  --IELYYDRGNHHEFVSLVKDLARPGEITQSQA-FDFEFT-------HVEKPYESYTGQN 127

Query: 150 INIQYLVTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDTQRHPLLP 209
           + ++Y +   I R      +   ++ +V T        P     +   +  +        
Sbjct: 128 VKLRYFLRATISRRL--NDVVKEMDIVVHTLS----TYPELNSSIKMEVGIEDC------ 175

Query: 210 ELKSGGFKVTGK-MSTQCSLLDPITGELTVEASSVPIHSIDIHLLRMESILLGEKIISET 268
                   +  +   ++  L D I G++      + I  ++I +++ E+   G  +  E 
Sbjct: 176 ------LHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIKHMEIDIIKRETTGTGPNVYHEN 229

Query: 269 SLIQTTQVADGDVCRNMTLPIYVILPRLLTCPTV--LAGPFSVEFKVSVVISF------- 319
             I   ++ DG   R  ++PI + L      PT+  +   FSV + +++V+         
Sbjct: 230 DTIAKYEIMDGAPVRGESIPIRLFLAGYELTPTMRDINKKFSVRYYLNLVLIDEEERRYF 289

Query: 320 -RSELSKLHKKSDPTTPRL 337
            + E+  L +K D     +
Sbjct: 290 KQQEV-VLWRKGDIVRKSM 307

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 3e-06
 Identities = 54/331 (16%), Positives = 93/331 (28%), Gaps = 111/331 (33%)

Query: 91  VVESLYGVIKP--IK-ILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHG 147
           V +    ++    I  I+     +  + R+        F   L    EE +++F E    
Sbjct: 38  VQDMPKSILSKEEIDHIIMSKDAVSGTLRL--------FWT-LLSKQEEMVQKFVEEVL- 87

Query: 148 ADINIQYLVTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMVVFYITQDTQRHPL 207
             IN ++L++  I       S+  T  +I + D+     +  +   V         R   
Sbjct: 88  -RINYKFLMS-PIKTEQRQPSMM-TRMYIEQRDRLYNDNQVFAKYNV--------SRLQP 136

Query: 208 LPELKS----------------GGFKVTGK------------------------------ 221
             +L+                  G    GK                              
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGS---GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193

Query: 222 --------MSTQCSLLDPITGELTVEASSVP--IHSIDIHLLRMESILLGEKIISETSLI 271
                   +      +DP     +  +S++   IHSI   L R    LL  K   E  L+
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR----LLKSKPY-ENCLL 248

Query: 272 QTTQVADGDVCRNMTLPIYVILPRLLTCPT-VLAGPFSVEFKVSVVISFRSELSKLHKKS 330
               V   +V        +      L+C   +      V   +S   +    L      S
Sbjct: 249 ----VLL-NVQNAKAWNAF-----NLSCKILLTTRFKQVTDFLSAATTTHISLDHH---S 295

Query: 331 DPTTPR-------LWLAM--ETLPLELVRTN 352
              TP         +L    + LP E++ TN
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	352
2r51_A	340	Vacuolar protein sorting-associated protein 26B; r	100.0
2fau_A	341	Vacuolar protein sorting 26; arrestin, retromer, p	100.0
1g4m_A	393	Beta-arrestin1; sensory transduction, alternative	99.86
1suj_A	392	CONE arrestin; sensory transduction, signaling pro	99.78
3ugu_A	380	S-arrestin; arrestin fold, signal termination, GPC	99.32
2fau_A	341	Vacuolar protein sorting 26; arrestin, retromer, p	97.17
2r51_A	340	Vacuolar protein sorting-associated protein 26B; r	97.16
1g4m_A	393	Beta-arrestin1; sensory transduction, alternative	97.05
1suj_A	392	CONE arrestin; sensory transduction, signaling pro	96.72
2p9r_A	102	Alpha-2-M, alpha-2-macroglobulin; human alpha2-mac	91.73
3ugu_A	380	S-arrestin; arrestin fold, signal termination, GPC	88.98
2hr0_A	645	Complement C3 beta chain; complement component C3B	88.88
4fxk_A	656	Complement C4 beta chain; immune system, proteolyt	85.39
2pn5_A	1325	TEP1R, thioester-containing protein I; FULL-length	83.76
3hrz_A	627	Cobra venom factor; serine protease, glycosilated,	82.16

>2r51_A Vacuolar protein sorting-associated protein 26B; retromer, fibronectin III, arrestin domain, membrane, phosphorylation, protein transport; 2.10A {Mus musculus} PDB: 3lh9_A 3lh8_A 3lha_A

Probab=100.00  E-value=4.3e-64  Score=489.33  Aligned_cols=275  Identities=18%  Similarity=0.309  Sum_probs=244.6

Q ss_pred             eeEEEEEeecCCce--EEEEEEcCC----CCCcCCCCcEEEEEEEEeC---CeEEEeEEEEEEEEEEEEEEecCccceEE
Q 018667           23 RAFVLKLKLQIDMS--TVEIKLSRS----NRIYRPSEPLQGKIVIKSS---SSIFHYGIHLTVNGSANLQVRGGSAGVVE   93 (352)
Q Consensus        23 ~~~~~~~k~~~~m~--~~~I~fd~~----~~vY~~Ge~VsG~V~i~~~---k~~~h~gI~i~~~G~a~~~ws~~s~g~~e   93 (352)
                      .+|.+++.|+.+.+  .++++.++.    .++|++||+|+|+|.|+..   ++++|+||+|++.|++.+.|         
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvY~~GE~VsG~V~I~~~~~~k~l~h~GIki~~~G~~e~~~---------   82 (340)
T 2r51_A           12 QSVEVEILLNDAESRKRAEHKTEDGKKEKYFLFYDGETVSGKVSLSLKNPNKRLEHQGIKIEFIGQIELYY---------   82 (340)
T ss_dssp             -CEEEEEEETTTTTSCEEEEECTTSCEEEEEEEETBCCEEEEEEEEESSTTSCEEESCEEEEEEEEEEEGG---------
T ss_pred             CCceEEEEECCCCccceEEeecCCCcEeecCcCCCCCEEEEEEEEEECCCCCeeEEEEEEEEEEEEEEEEe---------
Confidence            58999999998766  566666542    3499999999999999988   99999999999999965544         


Q ss_pred             EeecceeeEEEEeeeEEeeCCeeeCCCceEEeeEEEcCCCCCccccccccceEEeeEEEEEEEEEEEEecccCCCcceEE
Q 018667           94 SLYGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYLVTVDIMRGYLHKSLSATV  173 (352)
Q Consensus        94 ~~~~~~~~~~~~~~~~~l~~~G~L~~G~~~fpF~F~Lp~~~~~~~~~l~eSy~G~~g~IrY~vkv~I~Rp~~~~d~~~~~  173 (352)
                         ++.++++|++...+|+++|+|++|+| |||+|+||..       +||||+|+||+|||+|||+|+|||+  |+++++
T Consensus        83 ---~~~~~~~f~~~~~eL~~pG~L~~G~~-fpF~F~lp~~-------l~eSy~G~~g~IrY~vkv~i~Rp~~--di~~~~  149 (340)
T 2r51_A           83 ---DRGNHHEFVSLVKDLARPGEITQSQA-FDFEFTHVEK-------PYESYTGQNVKLRYFLRATISRRLN--DVVKEM  149 (340)
T ss_dssp             ---GTTCCEEEEEEEEEEECSEEECSCEE-EEEEECSBCC-------CSCCEECSSEEEEEEEEEEECCSSC--CEEEEE
T ss_pred             ---cCCCcEEEEEEEEEecCCCccCCCcE-EeeEeCCCCC-------CCcCeEeeeEEEEEEEEEEEEecCC--CceEEE
Confidence               45577899999999999999999999 9999999854       9999999999999999999999996  899999


Q ss_pred             EEEEEEcCccccCCCCCCceEEEEecccccccccCCCccccc-eEEEEEEeee-EeCCCceEEEEEEEEeccCeEEEEEE
Q 018667          174 EFIVETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKSGG-FKVTGKMSTQ-CSLLDPITGELTVEASSVPIHSIDIH  251 (352)
Q Consensus       174 eF~V~~~~~~l~~~~~~p~pv~f~it~~~l~~~~~~~~~~~~-f~I~~~~~~~-~~~~d~i~G~i~~~~s~~~Ik~ielq  251 (352)
                      +|+|++...       .|..      +.+++|+.    ..++ |+|++++++. |+++|+|+|+++|++|+++|++||++
T Consensus       150 eF~V~~~~~-------~p~~------~~pIk~Ev----gi~~cl~Ie~~~~ks~y~lgd~I~G~I~f~~s~i~Ik~iel~  212 (340)
T 2r51_A          150 DIVVHTLST-------YPEL------NSSIKMEV----GIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIKHMEID  212 (340)
T ss_dssp             EEEEECCCC-------CCCC------CCCEEEEE----EETTTEEEEEEESCSEEETTCEEEEEEEEEEECSCEEEEEEE
T ss_pred             EEEEEeCCC-------CCcc------CCCEeccc----cCCceEEEEEEECcccccCCCeEEEEEEEEEeeceeEEEEEE
Confidence            999987531       1221      23345553    2344 9999999988 99999999999999999999999999


Q ss_pred             EEEEEEEecCCceeEeeeEEEEEEEEeCccccCeeEeEEEEcCCCCCCCccc--cCceEEEEEEEEEEEEcCCccccccC
Q 018667          252 LLRMESILLGEKIISETSLIQTTQVADGDVCRNMTLPIYVILPRLLTCPTVL--AGPFSVEFKVSVVISFRSELSKLHKK  329 (352)
Q Consensus       252 Lir~Et~~~~~~~~~e~t~I~~~eI~dG~p~rg~~IPi~~~lp~l~~~PT~~--~~~FsV~y~Lnlvvi~e~~~~~~~~~  329 (352)
                      |+|+|||+++.++.+|+++|+++|||||+|+||++|||||+||++++|||+.  |++|||+|+|||+++|++|       
T Consensus       213 LiR~Et~~~~~~~~~e~~~i~k~eImdG~p~rge~IPirl~Lp~~~l~PT~~~~~~~fsV~Y~Lnlvl~~e~~-------  285 (340)
T 2r51_A          213 IIKRETTGTGPNVYHENDTIAKYEIMDGAPVRGESIPIRLFLAGYELTPTMRDINKKFSVRYYLNLVLIDEEE-------  285 (340)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEEEEESCCCTTCEEEEEEEGGGSCCCCCEEEETTTEEEEEEEEEEEEETTC-------
T ss_pred             EEEEEEEecCCCeeEEEEEEEEEEEecCCccCCCEEEEEEECCCCCCCCCccccCCeEEEEEEEEEEEEeCCC-------
Confidence            9999999999999999999999999999999999999999999999999996  9999999999999999999       


Q ss_pred             CCCCCcceeEEEeeecEEEEec
Q 018667          330 SDPTTPRLWLAMETLPLELVRT  351 (352)
Q Consensus       330 ~~~~~~~~~~~t~~~pi~l~r~  351 (352)
                              +.+++++||+|||.
T Consensus       286 --------~~~~kq~pI~L~R~  299 (340)
T 2r51_A          286 --------RRYFKQQEVVLWRK  299 (340)
T ss_dssp             --------CEEEEEEEEEEECC
T ss_pred             --------cEEEEEeeEEEEEC
Confidence                    89999999999996

>2fau_A Vacuolar protein sorting 26; arrestin, retromer, protein transport; HET: CAF; 2.10A {Homo sapiens}

Probab=100.00  E-value=3.6e-64  Score=489.81  Aligned_cols=277  Identities=19%  Similarity=0.316  Sum_probs=240.3

Q ss_pred             eeeEEEEEeecCCce--EEEEEEcCC----CCCcCCCCcEEEEEEEEeCC---eEEEeEEEEEEEEEEEEEEecCccceE
Q 018667           22 LRAFVLKLKLQIDMS--TVEIKLSRS----NRIYRPSEPLQGKIVIKSSS---SIFHYGIHLTVNGSANLQVRGGSAGVV   92 (352)
Q Consensus        22 ~~~~~~~~k~~~~m~--~~~I~fd~~----~~vY~~Ge~VsG~V~i~~~k---~~~h~gI~i~~~G~a~~~ws~~s~g~~   92 (352)
                      -.+|.+++.|+++.+  .++++.++.    .++|++||+|+|+|+|+..+   +++|+||+|++.|++.+.|        
T Consensus        11 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~vY~~GE~VsG~V~I~~~~~gk~l~h~GIki~~~G~~e~~~--------   82 (341)
T 2fau_A           11 GPIXEIDIVLNDGETRKMAEMKTEDGKVEKHYLFYDGESVSGKVNLAFKQPGKRLEHQGIRIEFVGQIELFN--------   82 (341)
T ss_dssp             TTTEEEEEEETTGGGSCEEEEECTTSCEEEEEEECTTCCEEEEEEEEESSSSCCEEESCEEEEEEEEEEECS--------
T ss_pred             CCCceEEEEECCCCccceEEeecCCCceeccCcCCCCCEEEEEEEEEECCCCCeeeEEEEEEEEEEEEEEEe--------
Confidence            348999999999776  666666652    45999999999999999765   9999999999999965544        


Q ss_pred             EEeecceeeEEEEeeeEEeeCCeeeCCCceEEeeEEEcCCCCCccccccccceEEeeEEEEEEEEEEEEecccCCCcceE
Q 018667           93 ESLYGVIKPIKILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYLVTVDIMRGYLHKSLSAT  172 (352)
Q Consensus        93 e~~~~~~~~~~~~~~~~~l~~~G~L~~G~~~fpF~F~Lp~~~~~~~~~l~eSy~G~~g~IrY~vkv~I~Rp~~~~d~~~~  172 (352)
                          ++.++++|++.+.+|+++|+|++| |+|||+|++|+       ++||||+|+||+|||+|||+|+|||+  |++++
T Consensus        83 ----~~~~~~~fls~~~eL~~~G~L~~g-~~fpF~F~~~~-------~~~eSy~G~~~~IrY~vrv~i~R~~~--di~~~  148 (341)
T 2fau_A           83 ----DKSNTHEFVNLVKELALPGELTQS-RSYDFEFMQVE-------KPYESYIGANVRLRYFLKVTIVRRLT--DLVKE  148 (341)
T ss_dssp             ----TTCCEEEEEEEEEEEECSEEECSC-EEEEEEECSCC-------CCSCCEECSSEEEEEEEEEEECCSSS--CEEEE
T ss_pred             ----cCCCcEEEEEEEEEEcCCCccCCC-cEEeeEeCCCC-------CCCcceEeeEEEEEEEEEEEEEecCc--ceeEE
Confidence                556788999999999999999999 99999999764       39999999999999999999999995  89999


Q ss_pred             EEEEEEEcCccccCCCCCCceEEEEecccccccccCCCccccceEEEEEEeee-EeCCCceEEEEEEEEeccCeEEEEEE
Q 018667          173 VEFIVETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKSGGFKVTGKMSTQ-CSLLDPITGELTVEASSVPIHSIDIH  251 (352)
Q Consensus       173 ~eF~V~~~~~~l~~~~~~p~pv~f~it~~~l~~~~~~~~~~~~f~I~~~~~~~-~~~~d~i~G~i~~~~s~~~Ik~ielq  251 (352)
                      ++|||++...    .+..+.|+.|+++++            ..++|++++++. |+++|+|+|+++|++|+++|++||++
T Consensus       149 ~eF~V~~~~~----~p~~~~pi~~evgie------------d~L~ieF~~~ks~y~l~d~I~G~I~f~~s~i~Ik~iel~  212 (341)
T 2fau_A          149 YDLIVHQLAT----YPDVNNSIKMEVGIE------------DXLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIQHMELQ  212 (341)
T ss_dssp             EEEEECCCBC----CCCCCCCEEEEEEET------------TTEEEEEEESCSEEETTCEEEEEEEEEEECSCEEEEEEE
T ss_pred             EEEEEEeCCC----CCCCCCCeEEEEecc------------ccEEEEEEEccccccCCCeEEEEEEEEEeccceEEEEEE
Confidence            9999987532    223346777766641            235677888887 99999999999999999999999999


Q ss_pred             EEEEEEEecCCceeEeeeEEEEEEEEeCccccCeeEeEEEEcCCCCCCCccc--cCceEEEEEEEEEEEEcCCccccccC
Q 018667          252 LLRMESILLGEKIISETSLIQTTQVADGDVCRNMTLPIYVILPRLLTCPTVL--AGPFSVEFKVSVVISFRSELSKLHKK  329 (352)
Q Consensus       252 Lir~Et~~~~~~~~~e~t~I~~~eI~dG~p~rg~~IPi~~~lp~l~~~PT~~--~~~FsV~y~Lnlvvi~e~~~~~~~~~  329 (352)
                      |+|+|||+++.++.+|+++|+++|||||+|+||++|||||+||++++|||+.  +++|||+|+|||+++|++|       
T Consensus       213 LiR~Et~~~~~~~~~e~~~i~k~eImDG~p~rge~IPirl~Lp~~~l~PT~~~~~~~fsV~Y~Lnlvlvde~~-------  285 (341)
T 2fau_A          213 LIKKEITGIGPSTTTETETIAKYEIMDGAPVKGESIPIRLFLAGYDPTPTMRDVNKKFSVRYFLNLVLVDEED-------  285 (341)
T ss_dssp             EEEEEEESCGGGCEEEEEEEEEEECCCC------CEEEEEESTTTCCCCCEEEEETTEEEEEEEEEEEEETTC-------
T ss_pred             EEEEEEEcCCCCeeeEEEEEEEEEEeCCCccCCCEEEEEEEcCCCCCCCcchhcCCeEEEEEEEEEEEEeCCC-------
Confidence            9999999999999999999999999999999999999999999999999996  9999999999999999999       


Q ss_pred             CCCCCcceeEEEeeecEEEEec
Q 018667          330 SDPTTPRLWLAMETLPLELVRT  351 (352)
Q Consensus       330 ~~~~~~~~~~~t~~~pi~l~r~  351 (352)
                           +|||+++|   |+|||.
T Consensus       286 -----rryfk~~E---I~L~R~  299 (341)
T 2fau_A          286 -----RRYFKQQE---IILWRK  299 (341)
T ss_dssp             -----CEEEEEEE---EEEECB
T ss_pred             -----CeeeeeeE---EEEEEC
Confidence                 99999999   999996

>1g4m_A Beta-arrestin1; sensory transduction, alternative splicing, signaling protein; 1.90A {Bos taurus} SCOP: b.1.18.11 b.1.18.11 PDB: 1g4r_A 3gd1_C 1jsy_A 1zsh_A* 2wtr_A 2wtr_B 3gc3_A 3p2d_A

Probab=99.86  E-value=1.5e-19  Score=179.44  Aligned_cols=280  Identities=13%  Similarity=0.133  Sum_probs=175.0

Q ss_pred             EEEEEEcCCC--CCcCCCCcEEEEEEEEeCCeEEEeEEEEEEEEEEEEEEe-cCccceEEEeecceeeEEEEeeeEEeeC
Q 018667           37 TVEIKLSRSN--RIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVR-GGSAGVVESLYGVIKPIKILKKSQEIRT  113 (352)
Q Consensus        37 ~~~I~fd~~~--~vY~~Ge~VsG~V~i~~~k~~~h~gI~i~~~G~a~~~ws-~~s~g~~e~~~~~~~~~~~~~~~~~l~~  113 (352)
                      .+.|.|.+.+  ..+..||.|+|.|.|+.. .++.+.|.+++.+...-.+. .+..|.  .|   .+ ..|+....-+.+
T Consensus        17 ~i~~yl~krdfvd~~~~~d~V~GvV~id~~-~lk~r~v~v~l~~~frygr~~~~v~g~--~f---~k-e~~~~~~~v~p~   89 (393)
T 1g4m_A           17 KLTVYLGKRDFVDHIDLVEPVDGVVLVDPE-YLKERRVYVTLTCAFRYGREDLDVLGL--TF---RK-DLFVANVQSFPP   89 (393)
T ss_dssp             SCEEEESCSEEEECSSCBCCEEEEEECCHH-HHTTCEEEEEEEEEEEESCTTCCCTTT--CE---EE-EEEEEEEEEESC
T ss_pred             eEEEEeCCceEEEecCCCCEEEEEEEEehh-HhcccEEEEEEEEEEEecCCcceeccc--cc---ce-eEEEEEEEEeCC
Confidence            4788887654  246789999999999977 99999998777764221111 011121  01   01 111221112222


Q ss_pred             Ce--eeC-----------CCceEEeeEEEcCCCCCccccccccceE--------EeeEEEEEEEEEEEEecccCCCcceE
Q 018667          114 SG--RIG-----------SGTTEVPFSMNLKQHGEENLERFYETFH--------GADINIQYLVTVDIMRGYLHKSLSAT  172 (352)
Q Consensus       114 ~G--~L~-----------~G~~~fpF~F~Lp~~~~~~~~~l~eSy~--------G~~g~IrY~vkv~I~Rp~~~~d~~~~  172 (352)
                      +|  ..+           +|.|.|||+|+||++       +|+||+        |.+|+|||.|+|.++||+.  +...+
T Consensus        90 ~~~~~~~lt~lqe~l~~~~G~h~fPF~f~LP~~-------lPsSfelq~~~~d~G~~g~IrY~Vka~i~~~~~--~k~~K  160 (393)
T 1g4m_A           90 APEDKKPLTRLQERLIKKLGEHAYPFTFEIPPN-------LPCSVTLQPGPEDTGKACGVDYEVKAFCAENLE--EKIHK  160 (393)
T ss_dssp             STTSCCCCCHHHHHHHHHSCTTEEEEEECCCTT-------SCCCEEEECCGGGGGGCEEEEEEEEEEEESSTT--SCCCG
T ss_pred             CCcccCccchhhhhhhccCCceEEEEEeeCCCC-------CCceEEEccccccCCCcEEEEEEEEEEEcCCcc--cccce
Confidence            33  233           999999999999976       899999        9999999999999999953  33333


Q ss_pred             EEEEEEEcCccccCCCCCCceEEEEecccccccccCCCccccceEEEEEEeee-EeCCCceEEEEEEE-EeccCeEEEEE
Q 018667          173 VEFIVETDKADLLERPVSPEMVVFYITQDTQRHPLLPELKSGGFKVTGKMSTQ-CSLLDPITGELTVE-ASSVPIHSIDI  250 (352)
Q Consensus       173 ~eF~V~~~~~~l~~~~~~p~pv~f~it~~~l~~~~~~~~~~~~f~I~~~~~~~-~~~~d~i~G~i~~~-~s~~~Ik~iel  250 (352)
                      +.|++... .+++..+....+      +...+.....-++.+++++++.+++. +..+|.|.-.+.+. .|+..|+.|++
T Consensus       161 ~~~v~l~i-~~l~~~p~~~~~------~~~~e~~k~fc~~sG~l~l~~sldk~~Y~pGE~I~v~v~I~N~S~k~Vk~Ikv  233 (393)
T 1g4m_A          161 RNSVRLVI-RKVQYAPERPGP------QPTAETTRQFLMSDKPLHLEASLDKEIYYHGEPISVNVHVTNNTNKTVKKIKI  233 (393)
T ss_dssp             GGEEEEEE-EEEECCCCCCSS------CCCCEEEEECBSSSSCEEEEEEESCSEEETTCCEEEEEEEEECSSCCEEEEEE
T ss_pred             EEEEEEec-cccccCchhhcC------CCceEEEEEEEEcCCCEEEEEEECCceEcCCCEEEEEEEEEcCCCCEEeEEEE
Confidence            44443321 112211111000      00001111112468899999999998 99999999999999 58899999999


Q ss_pred             EEEEEEEEe-cCCceeEeeeEEEEEEEEeCccccCeeEeEEEEcCCCCCCC-----------------cc--ccCceE--
Q 018667          251 HLLRMESIL-LGEKIISETSLIQTTQVADGDVCRNMTLPIYVILPRLLTCP-----------------TV--LAGPFS--  308 (352)
Q Consensus       251 qLir~Et~~-~~~~~~~e~t~I~~~eI~dG~p~rg~~IPi~~~lp~l~~~P-----------------T~--~~~~Fs--  308 (352)
                      .|++..++- -+.+..  ..+|...+..+ .+.+|.+.-..+.|+++ +.|                 |.  .|.+++  
T Consensus       234 ~L~Q~~~~~~~s~~~~--k~~Va~~e~~~-~V~~gs~~~~~~~L~P~-l~p~~~~~~~aldg~lk~~dt~l~ss~ii~~~  309 (393)
T 1g4m_A          234 SVRQYADICLFNTAQY--KCPVAMEEADD-TVAPSSTFCKVYTLTPF-LANNREKRGLALDGKLKHEDTNLASSTLLREG  309 (393)
T ss_dssp             EEEEEEEECSSBCEEE--EEEEEEEEECC-CBCTTEEEEEEEEECCC-GGGTTTCSSEEESSCTTSTTCCBCCCCCCCTT
T ss_pred             EEEEEEEEEEecCCce--EEEEEEEecCC-cCCCCCEEeeEEEEcCC-CCCcccccceeeccccccCCcccccceeecCC
Confidence            999998542 122222  24555555444 56678876666666554 244                 43  678888  


Q ss_pred             ---------EEEEEEEEEEEcCCccccccCCCCCCcceeEEEeeecEEEEe
Q 018667          309 ---------VEFKVSVVISFRSELSKLHKKSDPTTPRLWLAMETLPLELVR  350 (352)
Q Consensus       309 ---------V~y~Lnlvvi~e~~~~~~~~~~~~~~~~~~~~t~~~pi~l~r  350 (352)
                               |+|+|.+.+....|.-.+.    -.+   --+.-.+||.|..
T Consensus       310 ~~~~~~gi~VsY~vkV~l~v~~gg~~~~----~~~---~~l~~~lPi~i~~  353 (393)
T 1g4m_A          310 ANREILGIIVSYKVKVKLVVSRGGLLGD----LAS---SDVAVELPFTLMH  353 (393)
T ss_dssp             CCSGGGSEEEEEEEEEEEEECCC---------------CEEEEEEEEEEEC
T ss_pred             CCccccceEEEEEEEEEEEecCCCcccc----ccc---ccEEEEeCEEEec
Confidence                     9999999999876500000    000   1456678998864

>1suj_A CONE arrestin; sensory transduction, signaling protein; 2.38A {Ambystoma tigrinum}

Probab=99.78  E-value=2.3e-17  Score=163.02  Aligned_cols=275  Identities=14%  Similarity=0.177  Sum_probs=166.1

Q ss_pred             EEEEEcCCC--CCcCCCCcEEEEEEEEeCCeEEEeEEEEEEEEEEEEEEecC---ccceEEEeecceeeEEEEeeeEEee
Q 018667           38 VEIKLSRSN--RIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGG---SAGVVESLYGVIKPIKILKKSQEIR  112 (352)
Q Consensus        38 ~~I~fd~~~--~vY~~Ge~VsG~V~i~~~k~~~h~gI~i~~~G~a~~~ws~~---s~g~~e~~~~~~~~~~~~~~~~~l~  112 (352)
                      +++-+-+-+  .-..-.|.|.|.|.|.... ++.|.|.+.|.+.-  ...++   -.|.   .+.    .+++..+..+-
T Consensus        17 ~t~yl~krd~vd~~~~vd~vdGvV~vd~~~-lk~rkv~~~l~~~f--ryGred~~v~Gl---~f~----kel~~~~~qv~   86 (392)
T 1suj_A           17 LSIYLGKRDFVDHVEHVEPVDGVVLIDPEY-LKDRKVFVTLTCAF--RYGRDDLDLIGM---SFR----KDLYSLATQVY   86 (392)
T ss_dssp             EEEEESCSEEEECSSCBCCEEEEEEECTTT-SSSCEEEEEEEEEE--EEECCSSCCSSC---EEE----EEEEEEEEEEE
T ss_pred             EEEEECCceEEeecCccCceeeEEEEcHHH-hccceEEEEEEEee--ccCCCchhcCcc---eEE----EEEEEEEEEEe
Confidence            555554421  1245689999999999877 89999999999642  11111   1221   110    12222221211


Q ss_pred             C--Ce-ee---------CCCceEEeeEEEcCCCCCccccccccce--------EEeeEEEEEEEEEEEEecccCCCcceE
Q 018667          113 T--SG-RI---------GSGTTEVPFSMNLKQHGEENLERFYETF--------HGADINIQYLVTVDIMRGYLHKSLSAT  172 (352)
Q Consensus       113 ~--~G-~L---------~~G~~~fpF~F~Lp~~~~~~~~~l~eSy--------~G~~g~IrY~vkv~I~Rp~~~~d~~~~  172 (352)
                      +  ++ .+         +.|.|.|||+|+||++       +|+||        +|++|+|||.|||.++|||..+..  +
T Consensus        87 p~~~~~~~t~lQe~Ll~~~G~h~fPFsFqLP~~-------lPsSf~lqp~~~~eGk~g~VrY~VKa~i~~~~~dk~~--K  157 (392)
T 1suj_A           87 PPETKEPLTPLQEKLMKKLGAHAYPFCFKMGTN-------LPCSVTLQPGPDDTGKSCGVDFEVKAFCAENLEEKIH--K  157 (392)
T ss_dssp             SCCSCCCCCHHHHHHHHHHCSSEEEEEECCCSS-------CCCCEEECCCTTCCSCCEEEEEEEEEEEESCTTSCCC--G
T ss_pred             CCCCCccccHHHHHhhhcccCeeEeEEeeCCCC-------CCCeEEeccCCccCCCceeEEEEEEEEEcCChhhccc--e
Confidence            1  22 12         7899999999999987       77777        799999999999999999843222  2


Q ss_pred             EEEEEEEcCccccCCCC--CCceEEEEecccccccccCCCccccceEEEEEEeee-EeCCCceEEEEEEE-EeccCeEEE
Q 018667          173 VEFIVETDKADLLERPV--SPEMVVFYITQDTQRHPLLPELKSGGFKVTGKMSTQ-CSLLDPITGELTVE-ASSVPIHSI  248 (352)
Q Consensus       173 ~eF~V~~~~~~l~~~~~--~p~pv~f~it~~~l~~~~~~~~~~~~f~I~~~~~~~-~~~~d~i~G~i~~~-~s~~~Ik~i  248 (352)
                      +.+++... .+++..+.  .+.|        ..+......++.++++++..+++. +..+|+|.-.+.+. +|+..|+.|
T Consensus       158 r~tv~l~i-r~l~~~P~~~~~~p--------~~e~~k~f~~ssGpl~l~vsLdK~~Y~pGE~I~V~v~I~N~Ssk~Vk~I  228 (392)
T 1suj_A          158 RNSVQLVI-RKVQFAPANLGVAP--------KTEITRQFMLSDRPLHLEASLDKEIYYHGEPINVNVKINNTTGKIVKKI  228 (392)
T ss_dssp             GGEEEEEE-EEEECCCSSCCCCC--------CCEEEEEEEETTEEEEEEEEESCSEEETTCCEEEEEEEEECSSSEEEEE
T ss_pred             EEEEEEee-eccccCccccCCCC--------eeEEEEEeEecCCCEEEEEEeCCccccCCCEEEEEEEEECCCCCcEeEE
Confidence            22221110 11111111  1111        001111112457889999999998 89999999999999 588999999


Q ss_pred             EEEEEEEEEEec--CCceeEeeeEEEEEEEEeCccccCeeEeEEEEcCCCCCC----------------Ccc--ccCc--
Q 018667          249 DIHLLRMESILL--GEKIISETSLIQTTQVADGDVCRNMTLPIYVILPRLLTC----------------PTV--LAGP--  306 (352)
Q Consensus       249 elqLir~Et~~~--~~~~~~e~t~I~~~eI~dG~p~rg~~IPi~~~lp~l~~~----------------PT~--~~~~--  306 (352)
                      ++.|++.-++-.  +..+   ...+...+- ++.+.+|.+.-..+.|.++...                ||.  .+.+  
T Consensus       229 kv~L~Q~~~v~l~s~~~~---k~~Va~~e~-~e~V~pgst~~k~~~L~P~l~~n~~k~glaldg~lk~~dTnLassti~~  304 (392)
T 1suj_A          229 KIIVEQVTDVVLFSLDKY---VKTVCAEET-NDTVAANSTLSKTFSVTPMLANNREKRGLALDGKLKHEDTNLASTTVIR  304 (392)
T ss_dssp             EEEEEEEEEECSSSCCEE---EEEEEEEEC-CCCBCTTEEEEEEEEECCCGGGCSCCTTCCBSSCTTBSSCCBCCCCCCC
T ss_pred             EEEEEEEEEEEEecCCcE---EEEEEEEec-CCCcCCCCEEEEEEEEeccccCCCccceeeecccccCCCcccccccccc
Confidence            999999999752  2222   233443332 3467788885555555443221                333  2222  


Q ss_pred             ---------eEEEEEEEEEEEEcCCccccccCCCCCCcceeEEEeeecEEEEec
Q 018667          307 ---------FSVEFKVSVVISFRSELSKLHKKSDPTTPRLWLAMETLPLELVRT  351 (352)
Q Consensus       307 ---------FsV~y~Lnlvvi~e~~~~~~~~~~~~~~~~~~~~t~~~pi~l~r~  351 (352)
                               +.|+|.|.|.+....|  -++-  +=.+   --++-.+|+.|.+.
T Consensus       305 ~~~~~~~~gI~VsY~vkVkl~v~~g--g~~~--~~~s---~d~~velPf~L~~p  351 (392)
T 1suj_A          305 PGMDKEVLGILVSYKVKVHLVVARG--GILG--DLTS---SDVAVELPLTLMHP  351 (392)
T ss_dssp             TTSCGGGGSEEEEEEEEEEEEEETT--SSTT--CCCC---EEEEEEEEEEEECC
T ss_pred             CCCCccccceEEEEEEEEEEEEcCC--cccc--cccc---cCeeEEECeEEeCC
Confidence                     7999999999999874  0000  0000   13556688888653

>3ugu_A S-arrestin; arrestin fold, signal termination, GPCR, outer segment, SIGN protein; 1.85A {Bos taurus} PDB: 3ugx_A 1cf1_A 1ayr_A

Probab=99.32  E-value=1.3e-09  Score=106.55  Aligned_cols=182  Identities=12%  Similarity=0.186  Sum_probs=117.8

Q ss_pred             CceEEeeEEEcCCCCCccccccccceE--------EeeEEEEEEEEEEEEecc---cCCCcceEEEEEEEEcCccccCCC
Q 018667          120 GTTEVPFSMNLKQHGEENLERFYETFH--------GADINIQYLVTVDIMRGY---LHKSLSATVEFIVETDKADLLERP  188 (352)
Q Consensus       120 G~~~fpF~F~Lp~~~~~~~~~l~eSy~--------G~~g~IrY~vkv~I~Rp~---~~~d~~~~~eF~V~~~~~~l~~~~  188 (352)
                      |.|.|||.|+||++       +|+||.        |+.+.|+|.|||.+.++|   ..+.+....-+.++.. .+.....
T Consensus       122 G~nayPF~f~LP~~-------lPsSv~LQp~p~d~Gk~cgV~YeVKafia~~~~~~~dk~~Kr~sV~L~Irk-lq~aP~~  193 (380)
T 3ugu_A          122 GANTYPFLLTFPDY-------LPCSVMLQPAPQDVGKSCGVDFEIKAFATHSTDVEEDKIPKKSSVRLLIRK-VQHAPRD  193 (380)
T ss_dssp             CTTEEEEEECCCSS-------CCCSEEECCCTTCCSCCEEEEEEEEEEEEBCCSSSSSBCCGGGEEEEEEEE-EEBCCSC
T ss_pred             CcCceeEEEeCCCC-------CCCEEEeccCCccCCCccceEEEEEEEEccCcccccccccccceEEEeeee-cccCCcc
Confidence            88999999999987       788885        888999999999999998   3333433333333332 1110111


Q ss_pred             CCCceEEEEecccccccccCCCccccceEEEEEEeee-EeCCCceEEEEEEE-EeccCeEEEEEEEEEEEEEecC-Ccee
Q 018667          189 VSPEMVVFYITQDTQRHPLLPELKSGGFKVTGKMSTQ-CSLLDPITGELTVE-ASSVPIHSIDIHLLRMESILLG-EKII  265 (352)
Q Consensus       189 ~~p~pv~f~it~~~l~~~~~~~~~~~~f~I~~~~~~~-~~~~d~i~G~i~~~-~s~~~Ik~ielqLir~Et~~~~-~~~~  265 (352)
                      ..+.| .       .+....-.++.++++++..+++. +..+|+|.-.+.+. +|+..|+.|++.|++..++-.- .++.
T Consensus       194 ~~~~P-~-------~e~~K~F~~ssGpl~L~vsLdK~~Y~pGE~I~V~v~I~N~Ssk~Vk~Ikv~L~Q~~~v~l~s~~~y  265 (380)
T 3ugu_A          194 MGPQP-R-------AEASWQFFMSDKPLRLAVSLSKEIYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVTNVVLYSSDYY  265 (380)
T ss_dssp             CCCCC-E-------EEEEEECTTCCCEEEEEEEESCSEEETTCCEEEEEEEEECSSSCEEEEEEEEEEEEEECSSSCCEE
T ss_pred             cCCCC-c-------ceEEEEeEecCCCEEEEEEeCCccCcCCCEEEEEEEEEcCCCCeEeEEEEEEEEEEEEEEecCCeE
Confidence            11222 1       11111122467899999999987 88899999999999 5889999999999999987743 2333


Q ss_pred             EeeeEEEEEEEEeCccccCeeEeEEE-EcCCCC------------------C---CCcc-------ccCceEEEEEEEEE
Q 018667          266 SETSLIQTTQVADGDVCRNMTLPIYV-ILPRLL------------------T---CPTV-------LAGPFSVEFKVSVV  316 (352)
Q Consensus       266 ~e~t~I~~~eI~dG~p~rg~~IPi~~-~lp~l~------------------~---~PT~-------~~~~FsV~y~Lnlv  316 (352)
                      +  ..+...|..| .+..|.+.-=.+ ..|-+.                  +   +-|.       ..=-|=|+|.+++-
T Consensus       266 ~--~~Va~~E~~e-pV~pgst~~k~~~l~P~l~~n~~krglALdG~lk~edtnLASsT~~~~~~~ke~~GI~VsY~VkVk  342 (380)
T 3ugu_A          266 I--KTVAAEEAQE-KVPPNSSLTKTLTLVPLLANNRERRGIALDGKIKHEDTNLASSTIIKEGIDKTVMGILVSYQIKVK  342 (380)
T ss_dssp             E--EEEEEEECSC-CBCTTEEEEEEEEECCCGGGCSCCTTSCBSSCTTCTTCCBCCCCCCCTTCCGGGGSEEEEEEEEEE
T ss_pred             E--EEEEEeccCC-cCCCCCeEEeeEEEEEecccCCceeeEEecceeccCCCcccceeEecCCCCCcceEEEEEEEEEEE
Confidence            2  3355555333 566776632222 223221                  1   1121       22347799999999


Q ss_pred             EEEc
Q 018667          317 ISFR  320 (352)
Q Consensus       317 vi~e  320 (352)
                      ++..
T Consensus       343 l~v~  346 (380)
T 3ugu_A          343 LTVS  346 (380)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            9998

>2fau_A Vacuolar protein sorting 26; arrestin, retromer, protein transport; HET: CAF; 2.10A {Homo sapiens}

Probab=97.17  E-value=0.0047  Score=59.90  Aligned_cols=132  Identities=13%  Similarity=0.156  Sum_probs=80.0

Q ss_pred             eEEEEEeecCCceEEEEEEcCCCCCcCCCCcEEEEEEEEeCCeEEEeEEEEEEEEEEEEEEecCccceEEEeecceeeEE
Q 018667           24 AFVLKLKLQIDMSTVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIK  103 (352)
Q Consensus        24 ~~~~~~k~~~~m~~~~I~fd~~~~vY~~Ge~VsG~V~i~~~k~~~h~gI~i~~~G~a~~~ws~~s~g~~e~~~~~~~~~~  103 (352)
                      +..++.-.++.   +.|+|.-+...|.+||.|.|++.+.. ..++++.|.+.+.-...+.....       .+.  +...
T Consensus       165 pi~~evgied~---L~ieF~~~ks~y~l~d~I~G~I~f~~-s~i~Ik~iel~LiR~Et~~~~~~-------~~~--e~~~  231 (341)
T 2fau_A          165 SIKMEVGIEDX---LHIEFEYNKSKYHLKDVIVGKIYFLL-VRIKIQHMELQLIKKEITGIGPS-------TTT--ETET  231 (341)
T ss_dssp             CEEEEEEETTT---EEEEEEESCSEEETTCEEEEEEEEEE-ECSCEEEEEEEEEEEEEESCGGG-------CEE--EEEE
T ss_pred             CeEEEEecccc---EEEEEEEccccccCCCeEEEEEEEEE-eccceEEEEEEEEEEEEEcCCCC-------eee--EEEE
Confidence            44555444342   56666656668999999999999984 34677888888887754422210       000  0001


Q ss_pred             EEeeeEEeeCCeeeCCCceEEeeEEEcCCCCCccccccccceE--EeeEEEEEEEEEEE-EecccCCCcceEEEEEEEEc
Q 018667          104 ILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFH--GADINIQYLVTVDI-MRGYLHKSLSATVEFIVETD  180 (352)
Q Consensus       104 ~~~~~~~l~~~G~L~~G~~~fpF~F~Lp~~~~~~~~~l~eSy~--G~~g~IrY~vkv~I-~Rp~~~~d~~~~~eF~V~~~  180 (352)
                       + ...++ -+|.-..|.. +||.+.||..      .+++||.  ....+|+|+|.+.+ +..++  -..+..|.+..+.
T Consensus       232 -i-~k~eI-mDG~p~rge~-IPirl~Lp~~------~l~PT~~~~~~~fsV~Y~Lnlvlvde~~r--ryfk~~EI~L~R~  299 (341)
T 2fau_A          232 -I-AKYEI-MDGAPVKGES-IPIRLFLAGY------DPTPTMRDVNKKFSVRYFLNLVLVDEEDR--RYFKQQEIILWRK  299 (341)
T ss_dssp             -E-EEEEC-CCC------C-EEEEEESTTT------CCCCCEEEEETTEEEEEEEEEEEEETTCC--EEEEEEEEEEECB
T ss_pred             -E-EEEEE-eCCCccCCCE-EEEEEEcCCC------CCCCcchhcCCeEEEEEEEEEEEEeCCCC--eeeeeeEEEEEEC
Confidence             1 11222 2466566766 9999999853      4889999  78899999999999 44432  1334566666553

>2r51_A Vacuolar protein sorting-associated protein 26B; retromer, fibronectin III, arrestin domain, membrane, phosphorylation, protein transport; 2.10A {Mus musculus} PDB: 3lh9_A 3lh8_A 3lha_A

Probab=97.16  E-value=0.009  Score=57.89  Aligned_cols=133  Identities=12%  Similarity=0.193  Sum_probs=84.4

Q ss_pred             eEEEEEeecCCceEEEEEEcCCCCCcCCCCcEEEEEEEEeCCeEEEeEEEEEEEEEEEEEEecCccceEEEeecceeeEE
Q 018667           24 AFVLKLKLQIDMSTVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIK  103 (352)
Q Consensus        24 ~~~~~~k~~~~m~~~~I~fd~~~~vY~~Ge~VsG~V~i~~~k~~~h~gI~i~~~G~a~~~ws~~s~g~~e~~~~~~~~~~  103 (352)
                      +..++.-+...   +.|++.=+...|.+||.|.|+|.+... .++.+++.+.+.-...+.-..       ..+....  .
T Consensus       165 pIk~Evgi~~c---l~Ie~~~~ks~y~lgd~I~G~I~f~~s-~i~Ik~iel~LiR~Et~~~~~-------~~~~e~~--~  231 (340)
T 2r51_A          165 SIKMEVGIEDC---LHIEFEYNKSKYHLKDVIVGKIYFLLV-RIKIKHMEIDIIKRETTGTGP-------NVYHEND--T  231 (340)
T ss_dssp             CEEEEEEETTT---EEEEEEESCSEEETTCEEEEEEEEEEE-CSCEEEEEEEEEEEEEEEETT-------EEEEEEE--E
T ss_pred             CEeccccCCce---EEEEEEECcccccCCCeEEEEEEEEEe-eceeEEEEEEEEEEEEEecCC-------CeeEEEE--E
Confidence            44444444443   555555455689999999999998733 367777787776664332110       0100000  1


Q ss_pred             EEeeeEEeeCCeeeCCCceEEeeEEEcCCCCCccccccccceE--EeeEEEEEEEEEEEEecccCCCcceEEEEEEEEc
Q 018667          104 ILKKSQEIRTSGRIGSGTTEVPFSMNLKQHGEENLERFYETFH--GADINIQYLVTVDIMRGYLHKSLSATVEFIVETD  180 (352)
Q Consensus       104 ~~~~~~~l~~~G~L~~G~~~fpF~F~Lp~~~~~~~~~l~eSy~--G~~g~IrY~vkv~I~Rp~~~~d~~~~~eF~V~~~  180 (352)
                       +. ..++ -+|.--.|.. +||.+.||..      .+++||.  ....+|+|+|.+.+.-.-. ..+.+..++++...
T Consensus       232 -i~-k~eI-mdG~p~rge~-IPirl~Lp~~------~l~PT~~~~~~~fsV~Y~Lnlvl~~e~~-~~~~kq~pI~L~R~  299 (340)
T 2r51_A          232 -IA-KYEI-MDGAPVRGES-IPIRLFLAGY------ELTPTMRDINKKFSVRYYLNLVLIDEEE-RRYFKQQEVVLWRK  299 (340)
T ss_dssp             -EE-EEEE-EESCCCTTCE-EEEEEEGGGS------CCCCCEEEETTTEEEEEEEEEEEEETTC-CEEEEEEEEEEECC
T ss_pred             -EE-EEEE-ecCCccCCCE-EEEEEECCCC------CCCCCccccCCeEEEEEEEEEEEEeCCC-cEEEEEeeEEEEEC
Confidence             11 1122 1454456665 9999999853      4889999  7789999999999965554 35778888888764

>1g4m_A Beta-arrestin1; sensory transduction, alternative splicing, signaling protein; 1.90A {Bos taurus} SCOP: b.1.18.11 b.1.18.11 PDB: 1g4r_A 3gd1_C 1jsy_A 1zsh_A* 2wtr_A 2wtr_B 3gc3_A 3p2d_A

Probab=97.05  E-value=0.012  Score=58.15  Aligned_cols=133  Identities=14%  Similarity=0.164  Sum_probs=83.7

Q ss_pred             ecCCceEEEEEEcCCCCCcCCCCcEEEEEEEEeCCeEEEeEEEEEEEEEEEEEEecCccceEEEeecceeeEEEEeeeEE
Q 018667           31 LQIDMSTVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQE  110 (352)
Q Consensus        31 ~~~~m~~~~I~fd~~~~vY~~Ge~VsG~V~i~~~k~~~h~gI~i~~~G~a~~~ws~~s~g~~e~~~~~~~~~~~~~~~~~  110 (352)
                      +..+.-.+.+.+|+.  .|.|||.|.-.|.|++......++|++.+...+++.           +|.+.+....+   ..
T Consensus       192 ~~sG~l~l~~sldk~--~Y~pGE~I~v~v~I~N~S~k~Vk~Ikv~L~Q~~~~~-----------~~s~~~~k~~V---a~  255 (393)
T 1g4m_A          192 MSDKPLHLEASLDKE--IYYHGEPISVNVHVTNNTNKTVKKIKISVRQYADIC-----------LFNTAQYKCPV---AM  255 (393)
T ss_dssp             SSSSCEEEEEEESCS--EEETTCCEEEEEEEEECSSCCEEEEEEEEEEEEEEC-----------SSBCEEEEEEE---EE
T ss_pred             EcCCCEEEEEEECCc--eEcCCCEEEEEEEEEcCCCCEEeEEEEEEEEEEEEE-----------EecCCceEEEE---EE
Confidence            344444677777665  899999999999999888899999999999986442           12221111101   11


Q ss_pred             eeCCeeeCCCceEEeeEEEcCCCCCcccc------------ccccceEE-eeEE-----------EEEEEEEEEEeccc-
Q 018667          111 IRTSGRIGSGTTEVPFSMNLKQHGEENLE------------RFYETFHG-ADIN-----------IQYLVTVDIMRGYL-  165 (352)
Q Consensus       111 l~~~G~L~~G~~~fpF~F~Lp~~~~~~~~------------~l~eSy~G-~~g~-----------IrY~vkv~I~Rp~~-  165 (352)
                      ......+++|.+ +.+.|.|++. ++++.            ....+... .-.+           |.|.|+|.+.-++. 
T Consensus       256 ~e~~~~V~~gs~-~~~~~~L~P~-l~p~~~~~~~aldg~lk~~dt~l~ss~ii~~~~~~~~~gi~VsY~vkV~l~v~~gg  333 (393)
T 1g4m_A          256 EEADDTVAPSST-FCKVYTLTPF-LANNREKRGLALDGKLKHEDTNLASSTLLREGANREILGIIVSYKVKVKLVVSRGG  333 (393)
T ss_dssp             EEECCCBCTTEE-EEEEEEECCC-GGGTTTCSSEEESSCTTSTTCCBCCCCCCCTTCCSGGGSEEEEEEEEEEEEECCC-
T ss_pred             EecCCcCCCCCE-EeeEEEEcCC-CCCcccccceeeccccccCCcccccceeecCCCCccccceEEEEEEEEEEEecCCC
Confidence            111224667765 7888998543 11100            00012221 2234           99999999998873 


Q ss_pred             ------CCCcceEEEEEEEEcC
Q 018667          166 ------HKSLSATVEFIVETDK  181 (352)
Q Consensus       166 ------~~d~~~~~eF~V~~~~  181 (352)
                            +.++..+.+|++..++
T Consensus       334 ~~~~~~~~~l~~~lPi~i~~p~  355 (393)
T 1g4m_A          334 LLGDLASSDVAVELPFTLMHPK  355 (393)
T ss_dssp             -------CEEEEEEEEEEECCC
T ss_pred             cccccccccEEEEeCEEEecCC
Confidence                  2489999999997653

>1suj_A CONE arrestin; sensory transduction, signaling protein; 2.38A {Ambystoma tigrinum}

Probab=96.72  E-value=0.029  Score=55.30  Aligned_cols=132  Identities=15%  Similarity=0.200  Sum_probs=84.4

Q ss_pred             ecCCceEEEEEEcCCCCCcCCCCcEEEEEEEEeCCeEEEeEEEEEEEEEEEEEEecCccceEEEeecceeeEEEEeeeEE
Q 018667           31 LQIDMSTVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQE  110 (352)
Q Consensus        31 ~~~~m~~~~I~fd~~~~vY~~Ge~VsG~V~i~~~k~~~h~gI~i~~~G~a~~~ws~~s~g~~e~~~~~~~~~~~~~~~~~  110 (352)
                      +..+--.+++.+|+.  .|+|||+|.=.|.|++++....+.|++.+.=.+.+..           |........+   ..
T Consensus       189 ~ssGpl~l~vsLdK~--~Y~pGE~I~V~v~I~N~Ssk~Vk~Ikv~L~Q~~~v~l-----------~s~~~~k~~V---a~  252 (392)
T 1suj_A          189 LSDRPLHLEASLDKE--IYYHGEPINVNVKINNTTGKIVKKIKIIVEQVTDVVL-----------FSLDKYVKTV---CA  252 (392)
T ss_dssp             ETTEEEEEEEEESCS--EEETTCCEEEEEEEEECSSSEEEEEEEEEEEEEEECS-----------SSCCEEEEEE---EE
T ss_pred             ecCCCEEEEEEeCCc--cccCCCEEEEEEEEECCCCCcEeEEEEEEEEEEEEEE-----------ecCCcEEEEE---EE
Confidence            344433567777665  8999999999999998888899999999998875531           1111111111   12


Q ss_pred             eeCCeeeCCCceEEeeEEEcCCCCCccc----------------cccccceEEe--------eEEEEEEEEEEEEecccC
Q 018667          111 IRTSGRIGSGTTEVPFSMNLKQHGEENL----------------ERFYETFHGA--------DINIQYLVTVDIMRGYLH  166 (352)
Q Consensus       111 l~~~G~L~~G~~~fpF~F~Lp~~~~~~~----------------~~l~eSy~G~--------~g~IrY~vkv~I~Rp~~~  166 (352)
                      +...+.+.+|.+ +-+.|.|.+. ++++                --|.+|=.+.        -..|.|.|+|.+.-++..
T Consensus       253 ~e~~e~V~pgst-~~k~~~L~P~-l~~n~~k~glaldg~lk~~dTnLassti~~~~~~~~~~gI~VsY~vkVkl~v~~gg  330 (392)
T 1suj_A          253 EETNDTVAANST-LSKTFSVTPM-LANNREKRGLALDGKLKHEDTNLASTTVIRPGMDKEVLGILVSYKVKVHLVVARGG  330 (392)
T ss_dssp             EECCCCBCTTEE-EEEEEEECCC-GGGCSCCTTCCBSSCTTBSSCCBCCCCCCCTTSCGGGGSEEEEEEEEEEEEEETTS
T ss_pred             EecCCCcCCCCE-EEEEEEEecc-ccCCCccceeeecccccCCCccccccccccCCCCccccceEEEEEEEEEEEEcCCc
Confidence            222335677766 8888988743 1110                0122222211        169999999999888732


Q ss_pred             -------CCcceEEEEEEEEc
Q 018667          167 -------KSLSATVEFIVETD  180 (352)
Q Consensus       167 -------~d~~~~~eF~V~~~  180 (352)
                             .|+..+.+|++..+
T Consensus       331 ~~~~~~s~d~~velPf~L~~p  351 (392)
T 1suj_A          331 ILGDLTSSDVAVELPLTLMHP  351 (392)
T ss_dssp             STTCCCCEEEEEEEEEEEECC
T ss_pred             ccccccccCeeEEECeEEeCC
Confidence                   37899999998655

>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}

Probab=91.73  E-value=1.1  Score=34.79  Aligned_cols=25  Identities=24%  Similarity=0.478  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCCcCCCCcEEEEEEEEe
Q 018667           37 TVEIKLSRSNRIYRPSEPLQGKIVIKS   63 (352)
Q Consensus        37 ~~~I~fd~~~~vY~~Ge~VsG~V~i~~   63 (352)
                      .+-|..|++  +|+|||+|.=++.+..
T Consensus         3 ~~fi~tDr~--iYrPGetV~~~~~~~~   27 (102)
T 2p9r_A            3 LVFVQTDKS--IYKPGQTVKFRVVSMD   27 (102)
T ss_dssp             EEEEEESCS--EECTTCEEEEEEEEEC
T ss_pred             eEEEECCCc--ccCCCCEEEEEEEEEC
Confidence            356777776  9999999999998873

>3ugu_A S-arrestin; arrestin fold, signal termination, GPCR, outer segment, SIGN protein; 1.85A {Bos taurus} PDB: 3ugx_A 1cf1_A 1ayr_A

Probab=88.98  E-value=8.7  Score=37.48  Aligned_cols=45  Identities=22%  Similarity=0.354  Sum_probs=39.1

Q ss_pred             EEEEEEcCCCCCcCCCCcEEEEEEEEeCCeEEEeEEEEEEEEEEEEE
Q 018667           37 TVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQ   83 (352)
Q Consensus        37 ~~~I~fd~~~~vY~~Ge~VsG~V~i~~~k~~~h~gI~i~~~G~a~~~   83 (352)
                      .+++.+|+.  .|++||+|.=.|.|++.+....+.|++.+.=.+++.
T Consensus       214 ~L~vsLdK~--~Y~pGE~I~V~v~I~N~Ssk~Vk~Ikv~L~Q~~~v~  258 (380)
T 3ugu_A          214 RLAVSLSKE--IYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVTNVV  258 (380)
T ss_dssp             EEEEEESCS--EEETTCCEEEEEEEEECSSSCEEEEEEEEEEEEEEC
T ss_pred             EEEEEeCCc--cCcCCCEEEEEEEEEcCCCCeEeEEEEEEEEEEEEE
Confidence            566777654  899999999999999999899999999999998765

>2hr0_A Complement C3 beta chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2i07_A* 2wii_A* 2win_A* 2xwj_A* 3l3o_A* 3l5n_A* 3nms_A* 3nsa_A* 3ohx_A* 3t4a_A 2a74_A* 2a73_A* 2qki_A* 3g6j_A 2ice_A* 2icf_A* 2xwb_A*

Probab=88.88  E-value=13  Score=38.07  Aligned_cols=25  Identities=20%  Similarity=0.353  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCCcCCCCcEEEEEEEEe
Q 018667           37 TVEIKLSRSNRIYRPSEPLQGKIVIKS   63 (352)
Q Consensus        37 ~~~I~fd~~~~vY~~Ge~VsG~V~i~~   63 (352)
                      .+-|..||+  +|+|||+|.=++.+..
T Consensus       107 ~~fi~TDR~--iYrPGqtV~~r~i~~d  131 (645)
T 2hr0_A          107 YLFIQTDKT--IYTPGSTVLYRIFTVN  131 (645)
T ss_dssp             EEEEEESCS--BCCTTSEEEEEEEEEC
T ss_pred             cEEEEcCCc--cCCCCCEEEEEEEEEC
Confidence            466677665  9999999999988774

>4fxk_A Complement C4 beta chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_A*

Probab=85.39  E-value=14  Score=37.59  Aligned_cols=141  Identities=13%  Similarity=0.158  Sum_probs=72.3

Q ss_pred             EEEEEEcCCCCCcCCCCcEEEEEEEEeC--CeEEEeEEEEEEEEEEEEEEecCccceEEEeecceeeEEEEeeeEEeeCC
Q 018667           37 TVEIKLSRSNRIYRPSEPLQGKIVIKSS--SSIFHYGIHLTVNGSANLQVRGGSAGVVESLYGVIKPIKILKKSQEIRTS  114 (352)
Q Consensus        37 ~~~I~fd~~~~vY~~Ge~VsG~V~i~~~--k~~~h~gI~i~~~G~a~~~ws~~s~g~~e~~~~~~~~~~~~~~~~~l~~~  114 (352)
                      .+-|+-||+  +|+|||+|.=++.+...  ++... -+.+.+.         ...|         ..+.   .. .+   
T Consensus       121 ~vFIqTDr~--iYrPGqtV~~r~i~~d~~~~p~~~-~~~v~i~---------dp~g---------~~v~---~~-~~---  172 (656)
T 4fxk_A          121 HLFLQTDQP--IYNPGQRVRYRVFALDQKMRPSTD-TITVMVE---------NSHG---------LRVR---KK-EV---  172 (656)
T ss_dssp             EEEEEESCS--EECTTCEEEEEEEEECSSSSBCCC-CEEEEEE---------CTTC---------CEEE---EE-EE---
T ss_pred             cEEEECCCC--CcCCCCEEEEEEEEECCccCcCcc-cceEEEE---------CCCC---------cEEe---ee-EE---
Confidence            466777776  99999999988877632  23221 1222211         1111         1111   10 11   


Q ss_pred             eeeCCCceEEeeEEEcCCCCCccccccccceEEeeEEEEEEEEEEEEecccCCCcceEEEEEEEEcCccccCCCCCCceE
Q 018667          115 GRIGSGTTEVPFSMNLKQHGEENLERFYETFHGADINIQYLVTVDIMRGYLHKSLSATVEFIVETDKADLLERPVSPEMV  194 (352)
Q Consensus       115 G~L~~G~~~fpF~F~Lp~~~~~~~~~l~eSy~G~~g~IrY~vkv~I~Rp~~~~d~~~~~eF~V~~~~~~l~~~~~~p~pv  194 (352)
                       ....|.  |.++|+||...       +   .|     .|.|+|..+-.-   ....+..|.|+...         +...
T Consensus       173 -~~~~G~--~~~~f~Lp~~~-------~---~G-----~w~i~v~~~~~~---~~~~s~~F~Veeyv---------lP~f  222 (656)
T 4fxk_A          173 -YMPSSI--FQDDFVIPDIS-------E---PG-----TWKISARFSDGL---ESNSSTQFEVKKYV---------LPNF  222 (656)
T ss_dssp             -CCTTSE--EEEEEECCTTC-------C---SE-----EEEEEEEESSCT---TCCCCEEEEECCCC---------CCSE
T ss_pred             -ecCCce--EEEEecCCCCC-------C---Cc-----CEEEEEEEcCCC---ceeEEEEEEEEEEe---------cCcE
Confidence             123453  78999998651       1   15     577877765332   13356889997652         1222


Q ss_pred             EEEecccc--cccccCCCccccceEEEEEEeeeEeCCCceEEEEEEEE
Q 018667          195 VFYITQDT--QRHPLLPELKSGGFKVTGKMSTQCSLLDPITGELTVEA  240 (352)
Q Consensus       195 ~f~it~~~--l~~~~~~~~~~~~f~I~~~~~~~~~~~d~i~G~i~~~~  240 (352)
                      ++.++++.  +....   .....  +.+.++-.+..+.|+.|.+++..
T Consensus       223 eV~i~~~~~~~~~~~---~~~~~--~~v~v~a~Y~~G~PV~G~~~v~~  265 (656)
T 4fxk_A          223 EVKITPGKPYILTVP---GHLDE--MQLDIQARYIYGKPVQGVAYVRF  265 (656)
T ss_dssp             EEEEEESSSSCCEET---TEECC--CEEEEEEEETTCCCCCSEEEEEE
T ss_pred             EEEEecCcceeeecc---CCCCe--EEEEEEEEEccCccEeeEEEEEE
Confidence            33333211  10000   00111  44556666888899988876653

>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}

Probab=83.76  E-value=26  Score=39.13  Aligned_cols=26  Identities=8%  Similarity=0.478  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCCcCCCCcEEEEEEEEeC
Q 018667           37 TVEIKLSRSNRIYRPSEPLQGKIVIKSS   64 (352)
Q Consensus        37 ~~~I~fd~~~~vY~~Ge~VsG~V~i~~~   64 (352)
                      .+-|..||+  +|+|||+|.=++.+...
T Consensus       101 ~~fi~TDr~--iYrPGqtV~~r~~~~~~  126 (1325)
T 2pn5_A          101 SGLIQVDKP--VFKPGDTVNFRVIVLDT  126 (1325)
T ss_dssp             EEEEEESCS--EECTTCEEEEEEEEEET
T ss_pred             cEEEecCCC--ccCCCCEEEEEEEEecC
Confidence            456666665  99999999999987743

>3hrz_A Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_A* 3hs0_A*

Probab=82.16  E-value=27  Score=35.93  Aligned_cols=25  Identities=20%  Similarity=0.405  Sum_probs=19.3

Q ss_pred             EEEEEEcCCCCCcCCCCcEEEEEEEEe
Q 018667           37 TVEIKLSRSNRIYRPSEPLQGKIVIKS   63 (352)
Q Consensus        37 ~~~I~fd~~~~vY~~Ge~VsG~V~i~~   63 (352)
                      .+-|.-||+  +|+|||+|.=++.+..
T Consensus       105 ~~fi~TDr~--iYrPGqtV~~r~i~~d  129 (627)
T 3hrz_A          105 FLFIQTDKG--IYTPGSPVLYRVFSMD  129 (627)
T ss_dssp             CEEEEESCS--EECTTCEECEEEEESC
T ss_pred             cEEEECCCC--ccCCCCEEEEEEEEEC
Confidence            355666665  9999999999887764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	352
d1g4ma2	218	Arrestin {Cow (Bos taurus), beta-arrestin 1 [TaxId	97.4
d1cf1a2	211	Arrestin {Cow (Bos taurus), visual arrestin [TaxId	96.99
d1cf1a2	211	Arrestin {Cow (Bos taurus), visual arrestin [TaxId	95.89
d1g4ma2	218	Arrestin {Cow (Bos taurus), beta-arrestin 1 [TaxId	95.75

>d1g4ma2 b.1.18.11 (A:176-393) Arrestin {Cow (Bos taurus), beta-arrestin 1 [TaxId: 9913]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Arrestin/Vps26-like
domain: Arrestin
species: Cow (Bos taurus), beta-arrestin 1 [TaxId: 9913]

Probab=97.40  E-value=0.0097  Score=51.74  Aligned_cols=108  Identities=15%  Similarity=0.131  Sum_probs=75.3

Q ss_pred             ccccceEEEEEEeee-EeCCCceEEEEEEE-EeccCeEEEEEEEEEEEEEecCCceeEeeeEEEEEEEEeCccccCee--
Q 018667          211 LKSGGFKVTGKMSTQ-CSLLDPITGELTVE-ASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQVADGDVCRNMT--  286 (352)
Q Consensus       211 ~~~~~f~I~~~~~~~-~~~~d~i~G~i~~~-~s~~~Ik~ielqLir~Et~~~~~~~~~e~t~I~~~eI~dG~p~rg~~--  286 (352)
                      ++.+++++...+++. +..+|.|.-.+.++ .|+..|+.|.+.|+|.-++....+ .+...++...+-.++ ...|.+  
T Consensus        17 ~~sg~~~l~~~l~~~~y~~Ge~I~v~v~i~N~s~~~v~~i~~~l~q~~~~~~~~~-~~~~~~v~~~~~~~~-~~~~st~~   94 (218)
T d1g4ma2          17 MSDKPLHLEASLDKEIYYHGEPISVNVHVTNNTNKTVKKIKISVRQYADICLFNT-AQYKCPVAMEEADDT-VAPSSTFC   94 (218)
T ss_dssp             SSSSCEEEEEEESCSEEETTCCEEEEEEEEECSSCCEEEEEEEEEEEEEECSSBC-EEEEEEEEEEEECCC-BCTTEEEE
T ss_pred             eeCCcEEEEEEECCCeEcCCCEEEEEEEEECCCCCEEeeEEEEEEEEEEEEEecC-CcEEEEEEEEeeccc-cCCCcceE
Confidence            457889999999988 89999999999999 478899999999999999875433 333344444444444 223322  


Q ss_pred             -------------------EeEE--------EEcCCCCCCCcc--ccCceEEEEEEEEEEEEcCC
Q 018667          287 -------------------LPIY--------VILPRLLTCPTV--LAGPFSVEFKVSVVISFRSE  322 (352)
Q Consensus       287 -------------------IPi~--------~~lp~l~~~PT~--~~~~FsV~y~Lnlvvi~e~~  322 (352)
                                         +|=+        +..|.+  +|+.  .+..+.|+|+|.+.+....+
T Consensus        95 k~~~l~~~~~~n~~~~~ial~~~~~~~~~~l~~~p~~--~~~~~~~~~~I~V~Y~lkV~~~v~~~  157 (218)
T d1g4ma2          95 KVYTLTPFLANNREKRGLALDGKLKHEDTNLASSTLL--REGANREILGIIVSYKVKVKLVVSRG  157 (218)
T ss_dssp             EEEEECCCGGGTTTCSSEEESSCTTSTTCCBCCCCCC--CTTCCSGGGSEEEEEEEEEEEEECCC
T ss_pred             eEEEecccccccceeeeEecCcccceeeccccccccC--CCCccccceeEEEEEEEEEEEEecCC
Confidence                               1100        111222  4433  56889999999999999776

>d1cf1a2 b.1.18.11 (A:183-393) Arrestin {Cow (Bos taurus), visual arrestin [TaxId: 9913]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Arrestin/Vps26-like
domain: Arrestin
species: Cow (Bos taurus), visual arrestin [TaxId: 9913]

Probab=96.99  E-value=0.037  Score=47.81  Aligned_cols=108  Identities=9%  Similarity=0.123  Sum_probs=73.3

Q ss_pred             cccceEEEEEEeee-EeCCCceEEEEEEE-EeccCeEEEEEEEEEEEEEecCCceeEeeeEEEEEEEEeCccccCeeEeE
Q 018667          212 KSGGFKVTGKMSTQ-CSLLDPITGELTVE-ASSVPIHSIDIHLLRMESILLGEKIISETSLIQTTQVADGDVCRNMTLPI  289 (352)
Q Consensus       212 ~~~~f~I~~~~~~~-~~~~d~i~G~i~~~-~s~~~Ik~ielqLir~Et~~~~~~~~~e~t~I~~~eI~dG~p~rg~~IPi  289 (352)
                      +.+++++++.+++. +..+|.|.-.+.+. .|+..|+.|++.|++.-++-...+. ....++...+--++.+ .|.+.--
T Consensus        17 ~sg~l~l~~~ldr~~Y~~Ge~I~v~v~i~N~s~~~v~~i~~~l~Q~~~~~~~s~~-~~~~~Va~~e~~~~~~-~~~t~~k   94 (211)
T d1cf1a2          17 SDKPLRLAVSLSKEIYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVTNVVLYSSD-YYIKTVAAEEAQEKVP-PNSSLTK   94 (211)
T ss_dssp             TTEEEEEEEEESCSEEETTCCEEEEEEEEECSSSCEEEEEEEEEEEEEECSSSCC-EEEEEEEEEEESCCBC-TTEEEEE
T ss_pred             cCCCEEEEEEECCceEcCCCEEEEEEEEEcCCCcceeeEEEEEEEEEEEEEecCC-ceEEEEEEEEecCccC-CCcceEE
Confidence            46788899999987 88999999999999 5889999999999999988754432 2234455555444444 3332111


Q ss_pred             E----------------------------EEcCCCCCCCcc-ccCceEEEEEEEEEEEEcC
Q 018667          290 Y----------------------------VILPRLLTCPTV-LAGPFSVEFKVSVVISFRS  321 (352)
Q Consensus       290 ~----------------------------~~lp~l~~~PT~-~~~~FsV~y~Lnlvvi~e~  321 (352)
                      .                            +..+.....|+. .+..+.|+|.|.|.+....
T Consensus        95 ~~~l~p~~~~~k~~~~ialdg~~k~e~~~las~~~~~~~~~~~~~gI~VsY~vkV~l~~~~  155 (211)
T d1cf1a2          95 TLTLVPLLANNRERRGIALDGKIKHEDTNLASSTIIKEGIDKTVMGILVSYQIKVKLTVSG  155 (211)
T ss_dssp             EEEECCCGGGCSCCSSSCBSSCTTBTTCCBCCCCCCCTTSCGGGGSEEEEEEEEEEEEECC
T ss_pred             EEEeeeccccCccceeeeecccccccccccccccccCCCCCCccceEEEEEEEEEEEEecC
Confidence            0                            111111112222 6788999999999999874

>d1cf1a2 b.1.18.11 (A:183-393) Arrestin {Cow (Bos taurus), visual arrestin [TaxId: 9913]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Arrestin/Vps26-like
domain: Arrestin
species: Cow (Bos taurus), visual arrestin [TaxId: 9913]

Probab=95.89  E-value=0.12  Score=44.53  Aligned_cols=51  Identities=20%  Similarity=0.281  Sum_probs=41.9

Q ss_pred             ecCCceEEEEEEcCCCCCcCCCCcEEEEEEEEeCCeEEEeEEEEEEEEEEEEE
Q 018667           31 LQIDMSTVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANLQ   83 (352)
Q Consensus        31 ~~~~m~~~~I~fd~~~~vY~~Ge~VsG~V~i~~~k~~~h~gI~i~~~G~a~~~   83 (352)
                      +..+--.+.+.+|+.  .|++||.|.=.|.|.+......+.|++.+.-.+.+.
T Consensus        16 ~~sg~l~l~~~ldr~--~Y~~Ge~I~v~v~i~N~s~~~v~~i~~~l~Q~~~~~   66 (211)
T d1cf1a2          16 MSDKPLRLAVSLSKE--IYYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVTNVV   66 (211)
T ss_dssp             ETTEEEEEEEEESCS--EEETTCCEEEEEEEEECSSSCEEEEEEEEEEEEEEC
T ss_pred             ecCCCEEEEEEECCc--eEcCCCEEEEEEEEEcCCCcceeeEEEEEEEEEEEE
Confidence            334333678888775  799999999999999988889999999999987663

>d1g4ma2 b.1.18.11 (A:176-393) Arrestin {Cow (Bos taurus), beta-arrestin 1 [TaxId: 9913]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Arrestin/Vps26-like
domain: Arrestin
species: Cow (Bos taurus), beta-arrestin 1 [TaxId: 9913]

Probab=95.75  E-value=0.16  Score=43.52  Aligned_cols=50  Identities=18%  Similarity=0.295  Sum_probs=42.2

Q ss_pred             ecCCceEEEEEEcCCCCCcCCCCcEEEEEEEEeCCeEEEeEEEEEEEEEEEE
Q 018667           31 LQIDMSTVEIKLSRSNRIYRPSEPLQGKIVIKSSSSIFHYGIHLTVNGSANL   82 (352)
Q Consensus        31 ~~~~m~~~~I~fd~~~~vY~~Ge~VsG~V~i~~~k~~~h~gI~i~~~G~a~~   82 (352)
                      +..|.-.+.+.+|+.  .|.+||.|.=.|.|+++.....++|++.+.-.+..
T Consensus        17 ~~sg~~~l~~~l~~~--~y~~Ge~I~v~v~i~N~s~~~v~~i~~~l~q~~~~   66 (218)
T d1g4ma2          17 MSDKPLHLEASLDKE--IYYHGEPISVNVHVTNNTNKTVKKIKISVRQYADI   66 (218)
T ss_dssp             SSSSCEEEEEEESCS--EEETTCCEEEEEEEEECSSCCEEEEEEEEEEEEEE
T ss_pred             eeCCcEEEEEEECCC--eEcCCCEEEEEEEEECCCCCEEeeEEEEEEEEEEE
Confidence            445555788888775  79999999999999998889999999999988654