Citrus Sinensis ID: 018668


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350--
MGCFFRGLNDESGASQLNILRCPFLRNINEPTNFSFASSLPFPMPVRAAKGPIFEDGPNFDMAFRLFHGNDGVVPLSERSFVRPDVSEPELKAPQFNPLAAKAATISLSSFGPGGPFSFDSFSDKWKNQKKKPSKPSKKESSSKGGDSNHEAMSNEWLQTGNCPIAKSYRAVSGVLPLVAKVFQPPPGMKYKCPPVVVAARAAIARTAFAKSLRPQPLPAKVLVIGMLGMAANVPLGIWREHTEKFSVSWIVAVHAAVPFIAMMRKSVLMPKSAMAFTIAASVLGQVIGSRAERYRMKAVTEKSVTLKEKSVGSASQLQVVAVNGGHCAEPAKWDSVSLQVAKSSSSADVFC
cccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccHHHHHcccccEEEcccccccccccccccccccccccccccccEEEccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEcccccccccccccccHHHHHccccccccccc
ccHHHccccccccccHHHccccccHHccccccccEEccccccccccccccccccccccccHHHEEEEccccccEEccccccccccccccccccccccccHHHHHEEEHcccccccccccccHHHHHHHccccccccccccccccccccccccccHHHHHcccccHHHHHHHHcccHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccHHHHHHHcccccHHHEEHEHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEccccccccccc
mgcffrglndesgasqlnilrcpflrnineptnfsfasslpfpmpvraakgpifedgpnfDMAFRLFhgndgvvplsersfvrpdvsepelkapqfnplaAKAATislssfgpggpfsfdsfsdkwknqkkkpskpskkessskggdsnheamsnewlqtgncpiaksyravsgvlplvakvfqpppgmkykcppVVVAARAAIARTAFakslrpqplpaKVLVIGMLGMaanvplgiwrehTEKFSVSWIVAVHAAVPFIAMMRksvlmpksaMAFTIAASVLGQVIGSRAERYRMKAVTEKSVTLkeksvgsasQLQVVAVngghcaepakwdsVSLQVakssssadvfc
MGCFFRGLndesgasqLNILRCPFLRNINEPTNFSFASSLPFPMPVRAAKGPIFEDGPNFDMAFRLFHGNDGVVPLSERSFVRPDVSEPELKAPQFNPLAAKAATISLSSFGPGGPFSFDSFSDKWKnqkkkpskpskkessskggdsnHEAMSNEWLQTGNCPIAKSYRAVSGVLPLVAKVFQPPPGMKYKCPPVVVAARAAIARTafakslrpqpLPAKVLVIGMLGMAANVPLGIWREHTEKFSVSWIVAVHAAVPFIAMMRKSVLMPKSAMAFTIAASVLGQVIGSRAERYRMKAVTEksvtlkeksvgsasQLQVVAVNGGHCAEPAKWDSVSLqvakssssadvfc
MGCFFRGLNDESGASQLNILRCPFLRNINEPTNFSFASSLPFPMPVRAAKGPIFEDGPNFDMAFRLFHGNDGVVPLSERSFVRPDVSEPELKAPQFNPLAAKAATISLssfgpggpfsfdsfsdkwknqkkkpskpskkessskggdsnHEAMSNEWLQTGNCPIAKSYRAVSGVLPLVAKVFQPPPGMKYKCPPvvvaaraaiartafaKSLRPQPLPAKVLVIGMLGMAANVPLGIWREHTEKFSVSWIVAVHAAVPFIAMMRKSVLMPKSAMAFTIAASVLGQVIGSRAERYRMKAVTEKSVTLKEKSVGSASQLQVVAVNGGHCAEPAKWDsvslqvakssssaDVFC
***FFRGL*****ASQLNILRCPFLRNINEPTNFSFASSLPFPMPVRAAKGPIFEDGPNFDMAFRLFHGNDGVVPL********************************************************************************WLQTGNCPIAKSYRAVSGVLPLVAKVFQPPPGMKYKCPPVVVAARAAIARTAFAKSLRPQPLPAKVLVIGMLGMAANVPLGIWREHTEKFSVSWIVAVHAAVPFIAMMRKSVLMPKSAMAFTIAASVLGQVIGSRAERYRMKAVT****************LQVVAVNGGHCAEPAKW******************
***F*************NILRCPFLRNINEPTNFSFASSLPFP****AAKGPIFEDGPNFDMAFRLFHGNDGVVPLS*****************QFNPLAAKAATISLSSFGPGGPFSF******************************************NCPIAKSYRAVSGVLPLVAKVFQPPPGMKYKCPPVVVAARAAIARTAFAKSLRPQPLPAKVLVIGMLGMAANVPLGIWREHTEKFSVSWIVAVHAAVPFIAMMRKSVLMPKSAMAFTIAASVLGQVIGSRAERY************************************AKWD*VSL*********DVFC
********NDESGASQLNILRCPFLRNINEPTNFSFASSLPFPMPVRAAKGPIFEDGPNFDMAFRLFHGNDGVVPLSERSFVRPDVSEPELKAPQFNPLAAKAATISLSSFGPGGPFSFDSFSD***************************AMSNEWLQTGNCPIAKSYRAVSGVLPLVAKVFQPPPGMKYKCPPVVVAARAAIARTAFAKSLRPQPLPAKVLVIGMLGMAANVPLGIWREHTEKFSVSWIVAVHAAVPFIAMMRKSVLMPKSAMAFTIAASVLGQVIGSRAERYRMKAVTEKSVTLKEKSVGSASQLQVVAVNGGHCAEPAKWDS****************
*****RG**D*SGASQLNILRCPFLRNINEPTNFSFASSLPFPMPVRAAKGPIFEDGPNFDMAFRLFHGNDGVVPLSE***********ELKAPQFNPLAAKAATISLSSFGPGGPFSFDSFSDKWKNQ************************SNEWLQTGNCPIAKSYRAVSGVLPLVAKVFQPPPGMKYKCPPVVVAARAAIARTAFAKSLRPQPLPAKVLVIGMLGMAANVPLGIWREHTEKFSVSWIVAVHAAVPFIAMMRKSVLMPKSAMAFTIAASVLGQVIGSRAERYRMKAVTEKSV****************************WD*****************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MGCFFRGLNDESGASQLNILRCPFLRNINEPTNFSFASSLPFPMPVRAAKGPIFEDGPNFDMAFRLFHGNDGVVPLSERSFVRPDVSEPELKAPQFNPLAAKAATISLSSFGPGGPFSFDSFSDKWKNQKKKPSKPSKKESSSKGGDSNHEAMSNEWLQTGNCPIAKSYRAVSGVLPLVAKVFQPPPGMKYKCPPVVVAARAAIARTAFAKSLRPQPLPAKVLVIGMLGMAANVPLGIWREHTEKFSVSWIVAVHAAVPFIAMMRKSVLMPKSAMAFTIAASVLGQVIGSRAERYRMKAVTEKSVTLKEKSVGSASQLQVVAVNGGHCAEPAKWDSVSLQVAKSSSSADVFC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query352
255587523350 conserved hypothetical protein [Ricinus 0.994 1.0 0.784 1e-147
224100821394 predicted protein [Populus trichocarpa] 0.982 0.878 0.755 1e-142
224109728351 predicted protein [Populus trichocarpa] 0.994 0.997 0.750 1e-139
225449106358 PREDICTED: uncharacterized protein LOC10 0.994 0.977 0.727 1e-136
147863867 584 hypothetical protein VITISV_005903 [Viti 0.974 0.587 0.738 1e-135
297803618344 hypothetical protein ARALYDRAFT_492335 [ 0.928 0.950 0.687 1e-128
449452110350 PREDICTED: uncharacterized protein LOC10 0.991 0.997 0.722 1e-126
15234866344 uncharacterized protein [Arabidopsis tha 0.928 0.950 0.687 1e-121
357443353355 hypothetical protein MTR_1g095600 [Medic 0.971 0.963 0.701 1e-121
217072270355 unknown [Medicago truncatula] 0.971 0.963 0.701 1e-121
>gi|255587523|ref|XP_002534301.1| conserved hypothetical protein [Ricinus communis] gi|223525545|gb|EEF28083.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  526 bits (1354), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 276/352 (78%), Positives = 305/352 (86%), Gaps = 2/352 (0%)

Query: 1   MGCFFRGLNDESGASQLNILRCPFLRNINEPTNFSFASSLPFPMPVRAAKGPIFEDGPNF 60
           M  FFRG N+E   SQ +ILRCPFLRNINEPTNFSF+SSLPFPMPVR+ KGPIFEDGPNF
Sbjct: 1   MDFFFRGQNEEPAPSQNDILRCPFLRNINEPTNFSFSSSLPFPMPVRSGKGPIFEDGPNF 60

Query: 61  DMAFRLFHGNDGVVPLSERSFVRPDVSEPELKAPQFNPLAAKAATISLSSFGPGGPFSFD 120
           DMAFRLFHG DGVVPLSERS++  +    +   P+FNPLAAKAATISLSSFGPGGPFSFD
Sbjct: 61  DMAFRLFHGRDGVVPLSERSYISSEKEGRQPTLPEFNPLAAKAATISLSSFGPGGPFSFD 120

Query: 121 SFSDKWKNQKKKPSKPSKKESSSKGGDSNHEAMSNEWLQTGNCPIAKSYRAVSGVLPLVA 180
           SFS KWKN+KK  SKPSKKE SSKGG SNHEA+ NEWLQ+GNCPIAKSYRAVSGVLPLVA
Sbjct: 121 SFSKKWKNEKKN-SKPSKKEPSSKGGQSNHEALGNEWLQSGNCPIAKSYRAVSGVLPLVA 179

Query: 181 KVFQPPPGMKYKCPPVVVAARAAIARTAFAKSLRPQPLPAKVLVIGMLGMAANVPLGIWR 240
           KVFQPPPG+ Y+CPPVVVAARAAIARTAFAK+LRPQPLP+K+LVIGMLGMAANVPLGIWR
Sbjct: 180 KVFQPPPGVNYRCPPVVVAARAAIARTAFAKNLRPQPLPSKILVIGMLGMAANVPLGIWR 239

Query: 241 EHTEKFSVSWIVAVHAAVPFIAMMRKSVLMPKSAMAFTIAASVLGQVIGSRAERYRMKAV 300
           EHT+KFS SW  AVHAAVPFIAM+RKSVLMPKSAMAFTIAASVLGQVIGSRAERYR+KA 
Sbjct: 240 EHTKKFSASWFAAVHAAVPFIAMLRKSVLMPKSAMAFTIAASVLGQVIGSRAERYRLKAA 299

Query: 301 TEKSVTLKEKSVGSASQLQVVAVNGGHCAEPAKWDSVSLQVAKSSSSADVFC 352
             K ++L E SV ++S+ Q VAV G  C +  K+ + SLQV  +SSSADVFC
Sbjct: 300 AAKKMSLAETSVDASSEFQAVAVKGRCCGDFVKYPA-SLQVTGTSSSADVFC 350




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100821|ref|XP_002312026.1| predicted protein [Populus trichocarpa] gi|222851846|gb|EEE89393.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224109728|ref|XP_002315291.1| predicted protein [Populus trichocarpa] gi|222864331|gb|EEF01462.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225449106|ref|XP_002276752.1| PREDICTED: uncharacterized protein LOC100259846 [Vitis vinifera] gi|296086048|emb|CBI31489.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147863867|emb|CAN81117.1| hypothetical protein VITISV_005903 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297803618|ref|XP_002869693.1| hypothetical protein ARALYDRAFT_492335 [Arabidopsis lyrata subsp. lyrata] gi|297315529|gb|EFH45952.1| hypothetical protein ARALYDRAFT_492335 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449452110|ref|XP_004143803.1| PREDICTED: uncharacterized protein LOC101212152 [Cucumis sativus] gi|449485924|ref|XP_004157312.1| PREDICTED: uncharacterized LOC101212152 [Cucumis sativus] Back     alignment and taxonomy information
>gi|15234866|ref|NP_194233.1| uncharacterized protein [Arabidopsis thaliana] gi|42573033|ref|NP_974613.1| uncharacterized protein [Arabidopsis thaliana] gi|4455246|emb|CAB36745.1| putative protein [Arabidopsis thaliana] gi|7269353|emb|CAB79412.1| putative protein [Arabidopsis thaliana] gi|21553767|gb|AAM62860.1| unknown [Arabidopsis thaliana] gi|89000969|gb|ABD59074.1| At4g25030 [Arabidopsis thaliana] gi|110736875|dbj|BAF00395.1| hypothetical protein [Arabidopsis thaliana] gi|222424032|dbj|BAH19977.1| AT4G25030 [Arabidopsis thaliana] gi|332659593|gb|AEE84993.1| uncharacterized protein [Arabidopsis thaliana] gi|332659594|gb|AEE84994.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357443353|ref|XP_003591954.1| hypothetical protein MTR_1g095600 [Medicago truncatula] gi|358349056|ref|XP_003638556.1| hypothetical protein MTR_136s0028 [Medicago truncatula] gi|355481002|gb|AES62205.1| hypothetical protein MTR_1g095600 [Medicago truncatula] gi|355504491|gb|AES85694.1| hypothetical protein MTR_136s0028 [Medicago truncatula] Back     alignment and taxonomy information
>gi|217072270|gb|ACJ84495.1| unknown [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query352
TAIR|locus:2117293344 AT4G25030 "AT4G25030" [Arabido 0.880 0.901 0.605 1.1e-96
TAIR|locus:2163563342 AT5G45410 "AT5G45410" [Arabido 0.508 0.523 0.614 5.7e-86
UNIPROTKB|Q74FH085 GSU0639 "Uncharacterized prote 0.198 0.823 0.3 1.8e-05
TIGR_CMR|GSU_063985 GSU_0639 "hypothetical protein 0.198 0.823 0.3 1.8e-05
TAIR|locus:2117293 AT4G25030 "AT4G25030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 961 (343.3 bits), Expect = 1.1e-96, P = 1.1e-96
 Identities = 198/327 (60%), Positives = 225/327 (68%)

Query:    14 ASQLNILRCPFLRNINEPTNFSFASSLPFPMPVRAAKGPIFEDGPNFDMAFRLFHGNDGV 73
             ASQLNILRCPFLRNINEPTN SF+SSLPFP+P RA KGPIFEDGPNFD AFRLFHG DGV
Sbjct:    11 ASQLNILRCPFLRNINEPTNLSFSSSLPFPIPARAGKGPIFEDGPNFDTAFRLFHGQDGV 70

Query:    74 VPLSERSFVRPDVSEPELKAPQFNPLAAKAATISLXXXXXXXXXXXXXXXXXXXXXXXXX 133
             VPLS+ +  R +  +P    P F+PLAAKAATISL                         
Sbjct:    71 VPLSDTA--RTEAQKP---VPVFHPLAAKAATISLSSFGSGGPFGFDAFSDMFKNQKKKS 125

Query:   134 XXXXXXXXXXXXXXXXHEAMSNEWLQTGNCPIAKSYRAVSGVLPLVAKVFQPPPGMKYKC 193
                             HEAM +EWL+TGNCPIAKSYRAVSGV PLVAK+ QPPPGMK+KC
Sbjct:   126 DSSKNKGGN-------HEAMGDEWLKTGNCPIAKSYRAVSGVAPLVAKILQPPPGMKFKC 178

Query:   194 PPXXXXXXXXXXXXXXXKSLRPQPLPAKVLVIGMLGMAANVPLGIWREHTEKFSVSWIVA 253
             P                K+LRPQPLPAKVLVIGMLGMA NVPLG+WREHTEKFS SW +A
Sbjct:   179 PQAIVTARAAISKTPFAKNLRPQPLPAKVLVIGMLGMALNVPLGVWREHTEKFSASWFIA 238

Query:   254 VHAAVPFIAMMRKSVLMPKSAMAFTIAASVLGQVIGSRAERYRMKAVTEKSVTLKEKSVG 313
             +HAAVPFI ++RKSVLMPK+AM FTIAASVLGQVIGSRAER R+K+V EK +TL+  +  
Sbjct:   239 LHAAVPFIGILRKSVLMPKTAMVFTIAASVLGQVIGSRAERRRLKSVAEKKLTLEVPNPS 298

Query:   314 S--ASQLQVVAVNG-GHCAEPA--KWD 335
             S  A Q+Q   V+  G C +    KW+
Sbjct:   299 SVEADQMQFAGVSSDGRCGDKVVMKWN 325




GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0006944 "cellular membrane fusion" evidence=RCA
GO:0007165 "signal transduction" evidence=RCA
GO:0009414 "response to water deprivation" evidence=RCA
GO:0009611 "response to wounding" evidence=RCA
GO:0009723 "response to ethylene stimulus" evidence=RCA
GO:0009733 "response to auxin stimulus" evidence=RCA
GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA
GO:0009753 "response to jasmonic acid stimulus" evidence=RCA
GO:0009805 "coumarin biosynthetic process" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA
GO:0035556 "intracellular signal transduction" evidence=RCA
GO:0042538 "hyperosmotic salinity response" evidence=RCA
GO:0043069 "negative regulation of programmed cell death" evidence=RCA
TAIR|locus:2163563 AT5G45410 "AT5G45410" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q74FH0 GSU0639 "Uncharacterized protein" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_0639 GSU_0639 "hypothetical protein" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
estExt_fgenesh4_pg.C_LG_VIII0329
hypothetical protein (394 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query352
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 54.9 bits (131), Expect = 2e-08
 Identities = 44/283 (15%), Positives = 88/283 (31%), Gaps = 78/283 (27%)

Query: 59  NFDMAFRLFHGNDGVVPLSERSFVR-------PD-----VSEPE----LKAPQ------- 95
           +F+      +    ++ + E +FV         D     +S+ E    + +         
Sbjct: 8   DFETG-EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66

Query: 96  -FNPLAAKAATISLSSFGPGGPFSFDSFSDKWKNQKKKPSKPSKKESSSKGGDSNHEAMS 154
            F  L +K   +           ++       K ++++PS  ++     +          
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR---------- 116

Query: 155 NEWLQTGNCPIAKSYRAVSGVLPLVAKVFQPPPGMKYKCPPVVVAARAAIARTAFAKSLR 214
            + L   N   AK              V +  P          +  R A+        LR
Sbjct: 117 -DRLYNDNQVFAKYN------------VSRLQP---------YLKLRQAL------LELR 148

Query: 215 PQPLPAKVLVIGMLG-----MAANVPLGIWREHTEKFSVSWIVAVHAAVPFIAMMRKSVL 269
           P      VL+ G+LG     +A +V L    +    F + W+   +   P      ++VL
Sbjct: 149 PAK---NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP------ETVL 199

Query: 270 MPKSAMAFTIAASVLGQVIGSRAERYRMKAV-TEKSVTLKEKS 311
                + + I  +   +   S   + R+ ++  E    LK K 
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242


Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00