Citrus Sinensis ID: 018674

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350--
MGGGFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSR
cccccHHHHHHHHHHHccHHHHccccccccHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHccccHHHcccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccEEccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHEEccEEEEEEcEEccccccccccEEEEccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHccccccccccccEEEEEEEEEEEEccccc
ccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHcccccHHHccccHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHccccHcHHHHHHHHHHHHHHHHHHccEEEEEccccccccccccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEccccccccccccccEEEEEEccccc
MGGGFRVLHLVRPFlaflpevqsadrkvpfrEKVIYTVISLFIFLVcsqlplygihsttgadpfYWMRVILASNrgtvmelgiTPIVTSGLVMQLLAGSkiievdnnvrEDRALLNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLqkgyglgsGISLFIATNICENIIwkafspttinsgrgaefEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVvlpvrsknargqqgsypiklfytsnmPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKwkeseysggqyvpvggiayyitapsr
MGGGFRVLHLVRPFLAFlpevqsadrkvpFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVrsknargqqgsYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESeysggqyvpvgGIAYYITAPSR
MGGGFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSR
***GFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYIT****
***GFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNN*REDRALLNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKN*R*QQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAP**
MGGGFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSR
**GGFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAP**
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MGGGFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPSR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query352 2.2.26 [Sep-21-2011]
Q54XK2 475 Protein transport protein yes no 0.985 0.730 0.706 1e-148
P38379 494 Protein transport protein N/A no 0.980 0.698 0.706 1e-139
Q9JLR1 476 Protein transport protein yes no 0.980 0.724 0.695 1e-136
Q9H9S3 476 Protein transport protein yes no 0.980 0.724 0.695 1e-136
Q2KHX4 476 Protein transport protein yes no 0.980 0.724 0.695 1e-136
Q7T278 476 Protein transport protein N/A no 0.985 0.728 0.681 1e-136
Q7T277 476 Protein transport protein N/A no 0.985 0.728 0.681 1e-136
Q90ZM2 476 Protein transport protein yes no 0.980 0.724 0.685 1e-136
Q8AY32 476 Protein transport protein N/A no 0.985 0.728 0.681 1e-136
Q98SN8 476 Protein transport protein N/A no 0.985 0.728 0.687 1e-136
>sp|Q54XK2|SC61A_DICDI Protein transport protein Sec61 subunit alpha OS=Dictyostelium discoideum GN=sec61a PE=3 SV=1 Back     alignment and function desciption
 Score =  525 bits (1352), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 246/348 (70%), Positives = 295/348 (84%), Gaps = 1/348 (0%)

Query: 4   GFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADP 63
           GFR L +V+PF + +PEV   DRK+PFREKV++T I LFIFLVCSQ+PLYGI ST  +DP
Sbjct: 2   GFRFLDIVKPFTSLVPEVGQPDRKIPFREKVLWTAICLFIFLVCSQIPLYGIRSTDSSDP 61

Query: 64  FYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLG 123
           FYW +VI+ASNRGT+MELGI+PIVTSG+VMQLLAG+K+IE+D +V+ DR L + AQKL G
Sbjct: 62  FYWAKVIMASNRGTLMELGISPIVTSGMVMQLLAGAKLIEIDQSVKADRDLFSAAQKLFG 121

Query: 124 IIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGIS 183
           ++I +G+ VAY+ SG YG    LG GN  LI++QL FAGIIV+ LDELLQKGYG+GSGIS
Sbjct: 122 MLICVGQGVAYIWSGSYGDPAVLGFGNCFLIVLQLFFAGIIVMLLDELLQKGYGIGSGIS 181

Query: 184 LFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLP 243
           LFIATNICE I+WK FSPTT++ G+G EFEGAVIALFHLL+TRNDKVRAL+EAFYRQNLP
Sbjct: 182 LFIATNICETIVWKTFSPTTVSVGKGTEFEGAVIALFHLLLTRNDKVRALKEAFYRQNLP 241

Query: 244 NVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSN 303
           N+TNLLATVLIF++VIYFQGFRV LPV+S    GQQG+YPIKLFYTSN+PIILQSALVSN
Sbjct: 242 NITNLLATVLIFMVVIYFQGFRVDLPVKSTRVSGQQGTYPIKLFYTSNIPIILQSALVSN 301

Query: 304 LYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPS 351
           LYFISQL+YRR+  N  VNL G W+ SEYS  Q +PV G+ YYI++P+
Sbjct: 302 LYFISQLLYRRFPDNILVNLFGAWRTSEYS-QQMIPVSGLTYYISSPN 348
Appears to play a crucial role in the insertion of secretory and membrane polypeptides into the ER. It is required for assembly of membrane and secretory proteins. Found to be tightly associated with membrane-bound ribosomes, either directly or through adaptor proteins.
Dictyostelium discoideum (taxid: 44689)
>sp|P38379|SC61A_PYRSA Protein transport protein Sec61 subunit alpha OS=Pyrenomonas salina PE=2 SV=1 Back     alignment and function description
>sp|Q9JLR1|S61A2_MOUSE Protein transport protein Sec61 subunit alpha isoform 2 OS=Mus musculus GN=Sec61a2 PE=2 SV=3 Back     alignment and function description
>sp|Q9H9S3|S61A2_HUMAN Protein transport protein Sec61 subunit alpha isoform 2 OS=Homo sapiens GN=SEC61A2 PE=2 SV=3 Back     alignment and function description
>sp|Q2KHX4|S61A2_BOVIN Protein transport protein Sec61 subunit alpha isoform 2 OS=Bos taurus GN=SEC61A2 PE=2 SV=3 Back     alignment and function description
>sp|Q7T278|SC61A_HARAN Protein transport protein Sec61 subunit alpha OS=Harpagifer antarcticus GN=sec61a PE=2 SV=3 Back     alignment and function description
>sp|Q7T277|SC61A_DISMA Protein transport protein Sec61 subunit alpha OS=Dissostichus mawsoni GN=sec61a PE=2 SV=3 Back     alignment and function description
>sp|Q90ZM2|S61A1_DANRE Protein transport protein Sec61 subunit alpha-like 1 OS=Danio rerio GN=sec61al1 PE=2 SV=3 Back     alignment and function description
>sp|Q8AY32|SC61A_GADOC Protein transport protein Sec61 subunit alpha OS=Gadus ogac GN=sec61a PE=2 SV=3 Back     alignment and function description
>sp|Q98SN8|S61A2_ONCMY Protein transport protein Sec61 subunit alpha isoform B OS=Oncorhynchus mykiss GN=sec61ab PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query352
225461724 476 PREDICTED: protein transport protein Sec 0.997 0.737 0.974 0.0
224117452 476 Sec61 transport protein [Populus trichoc 0.997 0.737 0.965 0.0
224114762 476 Sec61 transport protein [Populus trichoc 0.997 0.737 0.965 0.0
359807371 476 uncharacterized protein LOC100798372 [Gl 0.997 0.737 0.962 0.0
356544102 476 PREDICTED: protein transport protein Sec 0.997 0.737 0.962 0.0
356543211 476 PREDICTED: protein transport protein Sec 0.997 0.737 0.962 0.0
6581004 476 putative integral membrane protein [Phas 0.997 0.737 0.962 0.0
356517046 476 PREDICTED: protein transport protein Sec 0.997 0.737 0.957 0.0
255645765 476 unknown [Glycine max] 0.997 0.737 0.954 0.0
255562508 476 preprotein translocase secy subunit, put 0.997 0.737 0.945 0.0
>gi|225461724|ref|XP_002285514.1| PREDICTED: protein transport protein Sec61 subunit alpha [Vitis vinifera] Back     alignment and taxonomy information
 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/351 (97%), Positives = 349/351 (99%)

Query: 1   MGGGFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTG 60
           MGGGFRVLHLVRPFL+FLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTG
Sbjct: 1   MGGGFRVLHLVRPFLSFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTG 60

Query: 61  ADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQK 120
           ADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQK
Sbjct: 61  ADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQK 120

Query: 121 LLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGS 180
           LLGI+IA+GEAVAYVLSGMYGSV+QLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGS
Sbjct: 121 LLGILIAVGEAVAYVLSGMYGSVSQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGS 180

Query: 181 GISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQ 240
           GISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITR DKVRALREAFYRQ
Sbjct: 181 GISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQ 240

Query: 241 NLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSAL 300
           NLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSAL
Sbjct: 241 NLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSAL 300

Query: 301 VSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPS 351
           VSNLYFISQL+YRRYSGNF VNLLGKWKESEYSGGQY+PVGG+AYYITAPS
Sbjct: 301 VSNLYFISQLLYRRYSGNFLVNLLGKWKESEYSGGQYIPVGGLAYYITAPS 351

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224117452|ref|XP_002331716.1| Sec61 transport protein [Populus trichocarpa] gi|222874322|gb|EEF11453.1| Sec61 transport protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224114762|ref|XP_002316850.1| Sec61 transport protein [Populus trichocarpa] gi|118487035|gb|ABK95348.1| unknown [Populus trichocarpa] gi|222859915|gb|EEE97462.1| Sec61 transport protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359807371|ref|NP_001241126.1| uncharacterized protein LOC100798372 [Glycine max] gi|255637958|gb|ACU19295.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356544102|ref|XP_003540494.1| PREDICTED: protein transport protein Sec61 subunit alpha-like [Glycine max] Back     alignment and taxonomy information
>gi|356543211|ref|XP_003540056.1| PREDICTED: protein transport protein Sec61 subunit alpha-like [Glycine max] Back     alignment and taxonomy information
>gi|6581004|gb|AAF18411.1|AF190652_1 putative integral membrane protein [Phaseolus vulgaris] Back     alignment and taxonomy information
>gi|356517046|ref|XP_003527201.1| PREDICTED: protein transport protein Sec61 subunit alpha-like [Glycine max] Back     alignment and taxonomy information
>gi|255645765|gb|ACU23375.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|255562508|ref|XP_002522260.1| preprotein translocase secy subunit, putative [Ricinus communis] gi|223538513|gb|EEF40118.1| preprotein translocase secy subunit, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query352
TAIR|locus:2040909 475 AT2G34250 "AT2G34250" [Arabido 0.994 0.736 0.931 7.2e-171
TAIR|locus:2029894 475 AT1G29310 "AT1G29310" [Arabido 0.994 0.736 0.925 3.1e-170
TAIR|locus:2037483 475 AT1G78720 "AT1G78720" [Arabido 0.994 0.736 0.905 1.2e-168
DICTYBASE|DDB_G0278885 475 sec61a "protein transport prot 0.985 0.730 0.706 2.6e-134
UNIPROTKB|Q2KHX4 476 SEC61A2 "Protein transport pro 0.977 0.722 0.697 2.5e-129
UNIPROTKB|Q8TC24418 SEC61A2 "Protein transport pro 0.977 0.822 0.697 2.5e-129
UNIPROTKB|Q9H9S3 476 SEC61A2 "Protein transport pro 0.977 0.722 0.697 2.5e-129
UNIPROTKB|F2Z5D0 476 SEC61A2 "Uncharacterized prote 0.977 0.722 0.697 2.5e-129
MGI|MGI:1931071 476 Sec61a2 "Sec61, alpha subunit 0.977 0.722 0.697 2.5e-129
UNIPROTKB|Q7T277 476 sec61a "Protein transport prot 0.980 0.724 0.687 4e-129
TAIR|locus:2040909 AT2G34250 "AT2G34250" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1661 (589.8 bits), Expect = 7.2e-171, P = 7.2e-171
 Identities = 327/351 (93%), Positives = 343/351 (97%)

Query:     1 MGGGFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTG 60
             MGGGFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTG
Sbjct:     1 MGGGFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTG 60

Query:    61 ADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQK 120
             ADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQK
Sbjct:    61 ADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQK 120

Query:   121 LLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGS 180
             LLGI+IAIGEAVAYVLSGMYG V QLGVGNAILII+QL FAGIIVICLDELLQKGYGLGS
Sbjct:   121 LLGILIAIGEAVAYVLSGMYGPVGQLGVGNAILIILQLFFAGIIVICLDELLQKGYGLGS 180

Query:   181 GISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQ 240
             GISLFIATNICE+IIWKAFSPTTIN+GRGAEFEGAVIALFH+LIT+++KV ALR+AFYRQ
Sbjct:   181 GISLFIATNICESIIWKAFSPTTINTGRGAEFEGAVIALFHMLITKSNKVAALRQAFYRQ 240

Query:   241 NLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSAL 300
             NLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSAL
Sbjct:   241 NLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSAL 300

Query:   301 VSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPS 351
             VSNLYFISQL+YR++SGNFFVNLLG+WKESEYSG Q +PV G+AY ITAP+
Sbjct:   301 VSNLYFISQLLYRKFSGNFFVNLLGQWKESEYSG-QSIPVSGLAYLITAPA 350
GO:0009306 "protein secretion" evidence=ISS
GO:0015031 "protein transport" evidence=IEA
GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=ISS
GO:0005794 "Golgi apparatus" evidence=RCA
GO:0006007 "glucose catabolic process" evidence=RCA
GO:0006098 "pentose-phosphate shunt" evidence=RCA
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0043090 "amino acid import" evidence=RCA
TAIR|locus:2029894 AT1G29310 "AT1G29310" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037483 AT1G78720 "AT1G78720" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0278885 sec61a "protein transport protein SEC61 alpha subunit" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KHX4 SEC61A2 "Protein transport protein Sec61 subunit alpha isoform 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q8TC24 SEC61A2 "Protein transport protein Sec61 subunit alpha isoform 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H9S3 SEC61A2 "Protein transport protein Sec61 subunit alpha isoform 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z5D0 SEC61A2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1931071 Sec61a2 "Sec61, alpha subunit 2 (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q7T277 sec61a "Protein transport protein Sec61 subunit alpha" [Dissostichus mawsoni (taxid:36200)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P78979SC61A_YARLINo assigned EC number0.59190.98570.7367yesno
Q90YL4S61A2_DANRENo assigned EC number0.67720.98010.7247yesno
Q6FRY3SC61A_CANGANo assigned EC number0.57600.97150.7139yesno
Q90ZM2S61A1_DANRENo assigned EC number0.68580.98010.7247yesno
P32915SC61A_YEASTNo assigned EC number0.55550.97150.7125yesno
Q2KHX4S61A2_BOVINNo assigned EC number0.69510.98010.7247yesno
Q5NVM7S61A2_PONABNo assigned EC number0.69230.98010.7247yesno
P79088SC61A_SCHPONo assigned EC number0.53250.96020.7056yesno
Q9H9S3S61A2_HUMANNo assigned EC number0.69510.98010.7247yesno
P38379SC61A_PYRSANo assigned EC number0.70600.98010.6983N/Ano
Q6BN08SC61A_DEBHANo assigned EC number0.58500.98290.7223yesno
Q54XK2SC61A_DICDINo assigned EC number0.70680.98570.7305yesno
Q6CPY9SC61A_KLULANo assigned EC number0.56060.98010.7187yesno
Q9JLR1S61A2_MOUSENo assigned EC number0.69510.98010.7247yesno
Q752H7SC61A_ASHGONo assigned EC number0.56890.97440.7145yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00027847001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (476 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00025575001
SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (307 aa)
•  •    0.812
GSVIVG00037925001
SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (205 aa)
   • •  0.800
GSVIVG00037758001
SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (688 aa)
     •  0.800
GSVIVG00036059001
SubName- Full=Putative uncharacterized protein (Chromosome chr3 scaffold_8, whole genome shotgu [...] (253 aa)
     •  0.800
GSVIVG00024600001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (371 aa)
     •  0.800
GSVIVG00016972001
SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (489 aa)
     •  0.800
GSVIVG00034206001
SubName- Full=Putative uncharacterized protein (Chromosome chr9 scaffold_7, whole genome shotgu [...] (129 aa)
•  •    0.752
GSVIVG00018552001
SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (155 aa)
•  •• • 0.672
GSVIVG00037864001
SubName- Full=Putative uncharacterized protein (Chromosome chr14 scaffold_9, whole genome shotg [...] (69 aa)
    ••• 0.671
GSVIVG00016417001
SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (83 aa)
•       0.648

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query352
PTZ00219 474 PTZ00219, PTZ00219, Sec61 alpha subunit; Provision 0.0
PRK08568 462 PRK08568, PRK08568, preprotein translocase subunit 2e-91
TIGR00967410 TIGR00967, 3a0501s007, preprotein translocase, Sec 8e-67
COG0201 436 COG0201, SecY, Preprotein translocase subunit SecY 2e-57
pfam00344340 pfam00344, SecY, SecY translocase 4e-55
pfam1055935 pfam10559, Plug_translocon, Plug domain of Sec61p 1e-13
PRK09204426 PRK09204, secY, preprotein translocase subunit Sec 9e-05
>gnl|CDD|185519 PTZ00219, PTZ00219, Sec61 alpha subunit; Provisional Back     alignment and domain information 
 Score =  631 bits (1629), Expect = 0.0
 Identities = 259/351 (73%), Positives = 310/351 (88%), Gaps = 1/351 (0%)

Query: 1   MGGGFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTG 60
           M    R L+L+RP +A LPEV   DRK+PF+EKV++T I+LF+FLVC Q+PLYGI S++ 
Sbjct: 1   MAKMTRFLNLLRPAMAILPEVAEPDRKIPFKEKVLWTAIALFVFLVCCQIPLYGIRSSSS 60

Query: 61  ADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQK 120
           +DPFYWMRVILASNRGT+MELGI+PIVTS +VMQLLAGSKII+VD N +EDRAL  GAQK
Sbjct: 61  SDPFYWMRVILASNRGTLMELGISPIVTSSMVMQLLAGSKIIDVDQNNKEDRALFEGAQK 120

Query: 121 LLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGS 180
           LLG++I +GEAVAYV SGMYG ++++G GNAILII+QL FAGI+VI LDELLQKGYGLGS
Sbjct: 121 LLGLLITLGEAVAYVWSGMYGDISEIGAGNAILIILQLFFAGIVVILLDELLQKGYGLGS 180

Query: 181 GISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQ 240
           GISLFIATNICE IIWKAFSPTTIN+GRG EFEGA+IALFHLL TR+DK+RAL+EAFYR 
Sbjct: 181 GISLFIATNICETIIWKAFSPTTINTGRGTEFEGAIIALFHLLFTRSDKLRALKEAFYRP 240

Query: 241 NLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSAL 300
           +LPN+TNLLATVL+FL+VIYFQGFRV LP++S+  RGQQ SYPIKLFYTSN+PIILQ+AL
Sbjct: 241 HLPNLTNLLATVLVFLVVIYFQGFRVDLPLKSQKVRGQQQSYPIKLFYTSNIPIILQTAL 300

Query: 301 VSNLYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPS 351
           VSNLYF SQ++YRR+  NF +NLLG+W+E EYS GQ VPVGG+AYY++ P+
Sbjct: 301 VSNLYFFSQILYRRFKNNFLINLLGQWQEVEYS-GQSVPVGGLAYYLSPPN 350

Length = 474
>gnl|CDD|236293 PRK08568, PRK08568, preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>gnl|CDD|233214 TIGR00967, 3a0501s007, preprotein translocase, SecY subunit Back     alignment and domain information
>gnl|CDD|223279 COG0201, SecY, Preprotein translocase subunit SecY [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|215869 pfam00344, SecY, SecY translocase Back     alignment and domain information
>gnl|CDD|204513 pfam10559, Plug_translocon, Plug domain of Sec61p Back     alignment and domain information
>gnl|CDD|236412 PRK09204, secY, preprotein translocase subunit SecY; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 352
PTZ00219 474 Sec61 alpha subunit; Provisional 100.0
KOG1373 476 consensus Transport protein Sec61, alpha subunit [ 100.0
PRK08568 462 preprotein translocase subunit SecY; Reviewed 100.0
COG0201 436 SecY Preprotein translocase subunit SecY [Intracel 100.0
PRK09204 426 secY preprotein translocase subunit SecY; Reviewed 100.0
TIGR00967410 3a0501s007 preprotein translocase, SecY subunit. 100.0
PRK12907 434 secY preprotein translocase subunit SecY; Reviewed 100.0
CHL00161417 secY preprotein translocase subunit SecY; Validate 100.0
PRK12417 404 secY preprotein translocase subunit SecY; Reviewed 100.0
TIGR02920 395 acc_sec_Y2 accessory Sec system translocase SecY2. 100.0
PF00344346 SecY: SecY translocase; InterPro: IPR002208 Secret 100.0
PF1055935 Plug_translocon: Plug domain of Sec61p; InterPro: 97.95
>PTZ00219 Sec61 alpha subunit; Provisional Back     alignment and domain information 
Probab=100.00  E-value=7.1e-79  Score=617.71  Aligned_cols=349  Identities=74%  Similarity=1.251  Sum_probs=312.4

Q ss_pred             CCccchHHhHHhhhhcchhhhccccccchHHHHHHHHHHHHHHHHcccccCCCccCCCCCChHHHHHHHhhcCcccchhc
Q 018674            2 GGGFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMEL   81 (352)
Q Consensus         2 ~~~~~~~~~~~~~~~~lp~v~~p~~~~~l~~ri~~Tl~il~iy~lg~~IPlpGi~~~~~~~~~~~l~~i~a~~~~SlfsL   81 (352)
                      .-||+++|.+||+++++|||++|++++++|+|++||++++++||+|++||+||+|.++..|++.+++++++++++|+|+|
T Consensus         2 ~~~~~~~~~~~~~~~~lP~v~~p~~~~~lr~Kil~T~~~l~iy~lg~~IPlpGi~~~~~~~~~~~~~~ifag~~~slf~L   81 (474)
T PTZ00219          2 AKMTRFLNLLRPAMAILPEVAEPDRKIPFKEKVLWTAIALFVFLVCCQIPLYGIRSSSSSDPFYWMRVILASNRGTLMEL   81 (474)
T ss_pred             CCcchHHHHHHHHHHhCCCccCCccCccHHHHHHHHHHHHHHHHHhccCcCCCcChhhccchHHHHHHHHhcCcchHHHh
Confidence            34699999999999999999999999999999999999999999999999999999888899999999999999999999


Q ss_pred             cchHHHhHHHHHHHhcccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccchhHHHHHHHHHHHH
Q 018674           82 GITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFA  161 (352)
Q Consensus        82 GI~PyItAsII~QLL~~~~l~~l~~~~~~gr~k~~~~tr~ltl~la~iQa~~~~~~~~~~~~~~~~~~~~~~~vl~L~aG  161 (352)
                      ||+||||||||||||++.++.++|++.++||||+|++||++|+++|++||++++..+.++...+.+..+.+++++||++|
T Consensus        82 GI~PyItAsII~QLL~~~~l~~~~~~~~~~r~k~~~~tr~lti~la~iqa~~~~~~~~~g~~~~~~~~~~~~iilqL~~g  161 (474)
T PTZ00219         82 GISPIVTSSMVMQLLAGSKIIDVDQNNKEDRALFEGAQKLLGLLITLGEAVAYVWSGMYGDISEIGAGNAILIILQLFFA  161 (474)
T ss_pred             ccHHHHHHHHHHHHHhhCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCccHHHHHHHHHHHHHH
Confidence            99999999999999998899999999999999999999999999999999999865434433333444678899999999


Q ss_pred             HHHHHHHHHhhhhccCcCcchHHHHHHHHHHHhhhhhcCchhhcccccccccchHHHHHHHHHhcchhHHHHHHHHhhcC
Q 018674          162 GIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQN  241 (352)
Q Consensus       162 s~~v~wL~e~it~g~GiGnGiSLiI~~gI~~~l~~~~fsp~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~  241 (352)
                      +++++||||++|||||+|||+||+|++||+++++|+.|+|.+.....+.+.+|.++.+++.+++++++.++++++++|.+
T Consensus       162 ~~~v~wL~E~Itkg~GIGnGiSL~I~agI~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~r~~  241 (474)
T PTZ00219        162 GIVVILLDELLQKGYGLGSGISLFIATNICETIIWKAFSPTTINTGRGTEFEGAIIALFHLLFTRSDKLRALKEAFYRPH  241 (474)
T ss_pred             HHHHHHHHHHHhcCcccccchHHHHHHHHHHHhHHHhcccccccccccccchhhHHHHHHHHhhcccccchhhhhhhhcc
Confidence            99999999999999999999999999999999999999998876554557788877776655577888999999999999


Q ss_pred             CccHHHHHHHHHHHHHHHhhcccEEEEeeeeeccCCcCcccccccccccchhHHHHHHHHHHHHHHHHHHhhhcCchhHH
Q 018674          242 LPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFV  321 (352)
Q Consensus       242 lp~l~~~~~~l~~~~~~v~~~~~~~rIPi~~~~~~~~~~~~PiKln~aGvmPiIfassll~~p~~i~~~l~~~~~~~~~~  321 (352)
                      +||++.+++++++++++||+|++|||||++|+|.+|++++||+|+||+|+||+|||||++++|+++++++++.++++...
T Consensus       242 l~~~~~~~~~~~i~~~vv~~~~~~~~IPi~~~~~~g~~~~~PiKln~agvmPiIfassll~~p~~i~~~l~~~~~~~~~~  321 (474)
T PTZ00219        242 LPNLTNLLATVLVFLVVIYFQGFRVDLPLKSQKVRGQQQSYPIKLFYTSNIPIILQTALVSNLYFFSQILYRRFKNNFLI  321 (474)
T ss_pred             cccHHHHHHHHHHHHhheeeeeeEEEEeeecccccCcCcccceeecccccHHHHHHHHHHHHHHHHHHHHHhcCCCCccc
Confidence            99999989999999999999999999999999988999999999999999999999999999999999987766666656


Q ss_pred             HhhhhccccccCCCccccceeEEEEEcCCC
Q 018674          322 NLLGKWKESEYSGGQYVPVGGIAYYITAPS  351 (352)
Q Consensus       322 ~~l~~~~~~~~~~~~~~~~~~l~y~~~pp~  351 (352)
                      +++++|.+.+.. |+++|++|++||++||+
T Consensus       322 ~~l~~~~~~~~~-~~~~~v~gl~~~l~~p~  350 (474)
T PTZ00219        322 NLLGQWQEVEYS-GQSVPVGGLAYYLSPPN  350 (474)
T ss_pred             ccccceeccccc-cccccchhHHhhcCCCc
Confidence            677777531100 34569999999999984

>KOG1373 consensus Transport protein Sec61, alpha subunit [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK08568 preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>COG0201 SecY Preprotein translocase subunit SecY [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK09204 secY preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>TIGR00967 3a0501s007 preprotein translocase, SecY subunit Back     alignment and domain information
>PRK12907 secY preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>CHL00161 secY preprotein translocase subunit SecY; Validated Back     alignment and domain information
>PRK12417 secY preprotein translocase subunit SecY; Reviewed Back     alignment and domain information
>TIGR02920 acc_sec_Y2 accessory Sec system translocase SecY2 Back     alignment and domain information
>PF00344 SecY: SecY translocase; InterPro: IPR002208 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway Back     alignment and domain information
>PF10559 Plug_translocon: Plug domain of Sec61p; InterPro: IPR019561 The Sec61/SecY translocon mediates translocation of proteins across the membrane and integration of membrane proteins into the lipid bilayer Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query352
2wwb_A 476 Cryo-Em Structure Of The Mammalian Sec61 Complex Bo 1e-134
3mp7_A 482 Lateral Opening Of A Translocon Upon Entry Of Prote 3e-49
1rh5_A 436 The Structure Of A Protein Conducting Channel Lengt 1e-46
1rhz_A 436 The Structure Of A Protein Conducting Channel Lengt 1e-46
3dkn_A 430 Sec61 In The Canine Ribosome-Channel Complex From T 1e-46
2yxq_A 431 The Plug Domain Of The Secy Protein Stablizes The C 2e-45
2yxr_A 426 The Plug Domain Of The Secy Protein Stablizes The C 1e-44
2ww9_A 490 Cryo-Em Structure Of The Active Yeast Ssh1 Complex 8e-42
3bo0_A 442 Ribosome-Secy Complex Length = 442 2e-41
>pdb|2WWB|A Chain A, Cryo-Em Structure Of The Mammalian Sec61 Complex Bound To The Actively Translating Wheat Germ 80s Ribosome Length = 476 Back     alignment and structure 
Iteration: 1

 Score =  473 bits (1218), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 230/347 (66%), Positives = 287/347 (82%), Gaps = 2/347 (0%)
Query: 6   RVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFY 65
           + L +++PF   LPE+Q  +RK+ F+EKV++T I+LFIFLVC Q+PL+GI S+  ADPFY
Sbjct: 4   KFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFY 63
Query: 66  WMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGII 125
           WMRVILASNRGT+MELGI+PIVTSGL+MQLLAG+KIIEV +  + DRAL NGAQKL G+I
Sbjct: 64  WMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPK-DRALFNGAQKLFGMI 122
Query: 126 IAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLF 185
           I IG+++ YV++GMYG  +++G G  +LI +QL  AG+IV+ LDELLQKGYGLGSGISLF
Sbjct: 123 ITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVLLLDELLQKGYGLGSGISLF 182
Query: 186 IATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNV 245
           IATNICE I+WKAFSPTT+N+GRG EFEGA+IALFHLL TR DKVRALREAFYRQNLPN+
Sbjct: 183 IATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNL 242
Query: 246 TNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLY 305
            NL+AT+ +F +VIYFQGFRV LP++S   RGQ  +YPIKLFYTSN+PIILQSALVSNLY
Sbjct: 243 MNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLY 302
Query: 306 FISQLMYRRYSGNFFVNLLGKWKESEYSG-GQYVPVGGIAYYITAPS 351
            ISQ++  R+SGN  V+LLG W ++   G  +  PVGG+ +Y++ P 
Sbjct: 303 VISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCHYLSPPE 349
>pdb|3MP7|A Chain A, Lateral Opening Of A Translocon Upon Entry Of Protein Suggests The Mechanism Of Insertion Into Membranes Length = 482 Back     alignment and structure
>pdb|1RH5|A Chain A, The Structure Of A Protein Conducting Channel Length = 436 Back     alignment and structure
>pdb|1RHZ|A Chain A, The Structure Of A Protein Conducting Channel Length = 436 Back     alignment and structure
>pdb|3DKN|A Chain A, Sec61 In The Canine Ribosome-Channel Complex From The Endoplasmic Reticulum Length = 430 Back     alignment and structure
>pdb|2YXQ|A Chain A, The Plug Domain Of The Secy Protein Stablizes The Closed State Of The Translocation Channel And Maintains A Membrane Seal Length = 431 Back     alignment and structure
>pdb|2YXR|A Chain A, The Plug Domain Of The Secy Protein Stablizes The Closed State Of The Translocation Channel And Maintains A Membrane Seal Length = 426 Back     alignment and structure
>pdb|2WW9|A Chain A, Cryo-Em Structure Of The Active Yeast Ssh1 Complex Bound To The Yeast 80s Ribosome Length = 490 Back     alignment and structure
>pdb|3BO0|A Chain A, Ribosome-Secy Complex Length = 442 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query352
3mp7_A 482 Preprotein translocase subunit SECY; protein trans 1e-119
2wwb_A 476 Protein transport protein SEC61 subunit alpha ISO; 1e-118
1rh5_A 436 Preprotein translocase SECY subunit; protein trans 1e-116
2ww9_A 490 SEC sixty-one protein homolog; ribonucleoprotein, 4e-96
3j01_A 435 Preprotein translocase SECY subunit; ribonucleopro 7e-05
3din_C431 Preprotein translocase subunit SECY; protein trans 3e-04
3dl8_G429 Preprotein translocase subunit SECY; RECA-type ATP 7e-04
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} Length = 482 Back     alignment and structure
 Score =  352 bits (905), Expect = e-119
 Identities = 109/348 (31%), Positives = 191/348 (54%), Gaps = 15/348 (4%)

Query: 6   RVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFY 65
               ++     + PEV+   R+VP RE+ ++T ++L ++ V +++P+YGI      D F 
Sbjct: 2   GARDIIYALERWFPEVERPKRRVPLRERFMWTGVALILYYVLAEIPVYGI-PERIQDYFQ 60

Query: 66  WMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGII 125
           ++RV+LA   G+++ LGI PIVT+G+++QLL GS+II++D    EDR      Q++  + 
Sbjct: 61  FLRVVLAGRNGSILTLGIGPIVTAGIILQLLVGSEIIKLDLANPEDRRFYQALQRVFSVF 120

Query: 126 IAIGEAVAYVLSGMYGS-VNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISL 184
           +   EA  ++L G +G     +    A+L+I+QL   GI++I LDEL+ K +G+GSGISL
Sbjct: 121 MCFFEAAVWILGGAFGRVGVDVTYAIAVLMILQLAMGGIVLIILDELVSK-WGIGSGISL 179

Query: 185 FIATNICENIIWKAFSPTT-INSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLP 243
           FIA  + + I+ ++ +P T  N       + A++      I    K       +   + P
Sbjct: 180 FIAAGVSQTILTRSLNPLTDPNIIDPLTGQPAIVGAIPYFIQHILKGDLWGAIYRGGSAP 239

Query: 244 NVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSN 303
           ++ +++AT+++F IV+YF+  RV +P+  +     +GSYPI+  Y SN+PIIL  AL +N
Sbjct: 240 DMLSVVATIVVFFIVVYFESMRVEIPLGYR-GVTVRGSYPIRFLYVSNIPIILTFALYAN 298

Query: 304 LYFISQLMYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAPS 351
           +   ++++            LG++           P+ G   Y+  P 
Sbjct: 299 IQLWARVL-----DRLGHPWLGRF-----DPTTGSPISGFVLYVIPPR 336
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris} Length = 476 Back     alignment and structure
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1 PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A Length = 436 Back     alignment and structure
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A Length = 490 Back     alignment and structure
>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Y 2aki_Y Length = 435 Back     alignment and structure
>3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8} Length = 431 Back     alignment and structure
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus} Length = 429 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query352
2wwb_A 476 Protein transport protein SEC61 subunit alpha ISO; 100.0
2ww9_A 490 SEC sixty-one protein homolog; ribonucleoprotein, 100.0
3mp7_A 482 Preprotein translocase subunit SECY; protein trans 100.0
1rh5_A 436 Preprotein translocase SECY subunit; protein trans 100.0
2zjs_Y 434 Preprotein translocase SECY subunit; translocon, S 100.0
3dl8_G 429 Preprotein translocase subunit SECY; RECA-type ATP 100.0
3din_C431 Preprotein translocase subunit SECY; protein trans 100.0
3j01_A 435 Preprotein translocase SECY subunit; ribonucleopro 100.0
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris} Back     alignment and structure
Probab=100.00  E-value=9.2e-82  Score=637.66  Aligned_cols=347  Identities=66%  Similarity=1.151  Sum_probs=307.5

Q ss_pred             ccchHHhHHhhhhcchhhhccccccchHHHHHHHHHHHHHHHHcccccCCCccCCCCCChHHHHHHHhhcCcccchhccc
Q 018674            4 GFRVLHLVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGI   83 (352)
Q Consensus         4 ~~~~~~~~~~~~~~lp~v~~p~~~~~l~~ri~~Tl~il~iy~lg~~IPlpGi~~~~~~~~~~~l~~i~a~~~~SlfsLGI   83 (352)
                      ++|++|.+||+.+++|||++|++|+|+|||++||++++++||+|+|||+||+|.++..|++.+++++||++|+|+|+|||
T Consensus         2 ~~~~l~~~~p~~~~lP~v~~P~~~~~lr~kil~Tl~~L~iyrigs~IPlpGi~~~~~~~~~~~~~~~fa~~~~SifaLGI   81 (476)
T 2wwb_A            2 AIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMELGI   81 (476)
T ss_dssp             CSCCCCCCHHHHHHSCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHSCCCSSSTTTCSCCCHHHHHHHCSSCSSSCSSSS
T ss_pred             CchHHHHHHHHHHhCCCCCCCCcCccHHHHHHHHHHHHHHHHHHccCCCCCcChhhccccHHHHHHHHccccccHHHHhh
Confidence            38999999999999999999999999999999999999999999999999999988788899999999999999999999


Q ss_pred             hHHHhHHHHHHHhcccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccchhHHHHHHHHHHHHHH
Q 018674           84 TPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGI  163 (352)
Q Consensus        84 ~PyItAsII~QLL~~~~l~~l~~~~~~gr~k~~~~tr~ltl~la~iQa~~~~~~~~~~~~~~~~~~~~~~~vl~L~aGs~  163 (352)
                      +||||||||||||++.++.+.+++.+ ||||+|++|||+|+++|++||.+++.++.++...+.+..+.+++++||++|++
T Consensus        82 ~PyItASII~QLL~g~~iip~~~~l~-gR~k~~~~tR~lti~la~iQa~~~v~~g~~~~~~~~~~~~~~~ivl~L~~Gt~  160 (476)
T 2wwb_A           82 SPIVTSGLIMQLLAGAKIIEVGDTPK-DRALFNGAQKLFGMIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGL  160 (476)
T ss_dssp             THHHHHHHHHHHHHHHCCCSCCSSSS-CSSCHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCccccchhhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHH
Confidence            99999999999998777777666655 99999999999999999999999988555554334456677899999999999


Q ss_pred             HHHHHHHhhhhccCcCcchHHHHHHHHHHHhhhhhcCchhhcccccccccchHHHHHHHHHhcchhHHHHHHHHhhcCCc
Q 018674          164 IVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLP  243 (352)
Q Consensus       164 ~v~wL~e~it~g~GiGnGiSLiI~~gI~~~l~~~~fsp~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~lp  243 (352)
                      ++|||||+||||||+|||+|++|++|||++++|+.|+|.......+.+++|.+..+++.+.++.++.++++++++|.++|
T Consensus       161 ~lmwL~E~It~g~GiGnGiSLiI~agI~~~l~~~~f~p~~~~~~~~~e~~G~i~~~~~~~~~~~~~~~~l~~~~~r~~l~  240 (476)
T 2wwb_A          161 IVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLP  240 (476)
T ss_dssp             HHHHHHHHHHTTTCSSCSHHHHHHHHHHHHHHHHHTCCSSCSCCCSCCTTTTCCCHHHHHHHTCTTSSSSSSCSSSSSHH
T ss_pred             HHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHhcCcccccccccchhHHHHHHHHHHHhcccccccchhhhhhccccc
Confidence            99999999999999999999999999999999999999876555556778877667776666778888999999999999


Q ss_pred             cHHHHHHHHHHHHHHHhhcccEEEEeeeeeccCCcCcccccccccccchhHHHHHHHHHHHHHHHHHHhhhcCchhHHHh
Q 018674          244 NVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNL  323 (352)
Q Consensus       244 ~l~~~~~~l~~~~~~v~~~~~~~rIPi~~~~~~~~~~~~PiKln~aGvmPiIfassll~~p~~i~~~l~~~~~~~~~~~~  323 (352)
                      |++.+++++++++++||+|++||||||||+|++|+++|+|+|+||+||||+|||||++++|+++++++++.++++.+.++
T Consensus       241 ~~~~ll~~~~v~~~vV~~q~~~rrIPv~yak~~g~~~~~PiKln~aGviPiIfassll~~p~~i~~~~~~~~~~~~~~~~  320 (476)
T 2wwb_A          241 NLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSARFSGNLLVSL  320 (476)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCBCCCCCBCSSSSBCSCCCBCTTTSSHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHH
T ss_pred             hHHHHHHHHHHHhheeEEEEEEEEEEEEecccCCccceeeeeeccccchHHHHHHHHHHHHHHHHHHHhhcCCCcchhhh
Confidence            98888888999999999999999999999999999999999999999999999999999999999988766565566677


Q ss_pred             hhhccccc-cCCCccccceeEEEEEcCCC
Q 018674          324 LGKWKESE-YSGGQYVPVGGIAYYITAPS  351 (352)
Q Consensus       324 l~~~~~~~-~~~~~~~~~~~l~y~~~pp~  351 (352)
                      ++.|.+.+ +..++++|++|++||++||+
T Consensus       321 lg~~~~~~~~~~~~~~~~~g~~~~l~~p~  349 (476)
T 2wwb_A          321 LGTWSDTSSGGPARAYPVGGLCHYLSPPE  349 (476)
T ss_dssp             HCSSSTTCSCTTSSSCCSSSHHHHTSCCS
T ss_pred             hhhhhhccccccccccccHHHHHHcCCcc
Confidence            77775321 00124579999999999975
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A Back     alignment and structure
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} SCOP: f.41.1.0 Back     alignment and structure
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1 PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A Back     alignment and structure
>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y Back     alignment and structure
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus} Back     alignment and structure
>3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8} Back     alignment and structure
>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Y 2aki_Y Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 352
d1rh5a_ 422 f.41.1.1 (A:) Preprotein translocase SecY subunit 8e-72
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 422 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Preprotein translocase SecY subunit
superfamily: Preprotein translocase SecY subunit
family: Preprotein translocase SecY subunit
domain: Preprotein translocase SecY subunit
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  227 bits (580), Expect = 8e-72
 Identities = 116/340 (34%), Positives = 184/340 (54%), Gaps = 40/340 (11%)

Query: 11  VRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVI 70
           + P L  +PEV+   +++ F+EK+ +T I L ++ +   + +Y   +      F + + I
Sbjct: 3   LIPILEKIPEVELPVKEITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQIP-AIFEFWQTI 61

Query: 71  LASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGE 130
            AS  GT++ LGI PIVT+G++MQLL GS II++D ++ E+RAL  G QKLL II+   E
Sbjct: 62  TASRIGTLITLGIGPIVTAGIIMQLLVGSGIIQMDLSIPENRALFQGCQKLLSIIMCFVE 121

Query: 131 AVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATNI 190
           AV +V +G +G +  L    A L+I+Q+ F  II+I LDE++ K YG+GSGI LFIA  +
Sbjct: 122 AVLFVGAGAFGILTPL---LAFLVIIQIAFGSIILIYLDEIVSK-YGIGSGIGLFIAAGV 177

Query: 191 CENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLLA 250
            + I   A  P           EG +    + LI                N+  +  ++ 
Sbjct: 178 SQTIFVGALGP-----------EGYLWKFLNSLIQG------------VPNIEYIAPIIG 214

Query: 251 TVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQL 310
           T+++FL+V+Y +  RV +P+     +G  G YPIK  Y SN+P+IL +AL +N+      
Sbjct: 215 TIIVFLMVVYAECMRVEIPLAHGRIKGAVGKYPIKFVYVSNIPVILAAALFANIQLWGLA 274

Query: 311 MYRRYSGNFFVNLLGKWKESEYSGGQYVPVGGIAYYITAP 350
           +Y        + +LG ++           V GIAYY++ P
Sbjct: 275 LY-----RMGIPILGHYEGGR-------AVDGIAYYLSTP 302

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query352
d1rh5a_ 422 Preprotein translocase SecY subunit {Archaeon Meth 100.0
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Preprotein translocase SecY subunit
superfamily: Preprotein translocase SecY subunit
family: Preprotein translocase SecY subunit
domain: Preprotein translocase SecY subunit
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=7.4e-71  Score=550.29  Aligned_cols=302  Identities=38%  Similarity=0.690  Sum_probs=259.7

Q ss_pred             hHHhhhhcchhhhccccccchHHHHHHHHHHHHHHHHcccccCCCccCCCCCChHHHHHHHhhcCcccchhccchHHHhH
Q 018674           10 LVRPFLAFLPEVQSADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTS   89 (352)
Q Consensus        10 ~~~~~~~~lp~v~~p~~~~~l~~ri~~Tl~il~iy~lg~~IPlpGi~~~~~~~~~~~l~~i~a~~~~SlfsLGI~PyItA   89 (352)
                      .++|+++++||+++|+||.++|||++||++++++||+|+|||+||+|.+. .|.+.+++.++|++++|+|+|||+|||||
T Consensus         2 ~~~p~~~~~p~v~~p~~~~~lr~kil~T~~~l~iy~igs~IPlpgi~~~~-~~~~~~~~~~~a~~~~Sif~LGI~PyItA   80 (422)
T d1rh5a_           2 KLIPILEKIPEVELPVKEITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQI-PAIFEFWQTITASRIGTLITLGIGPIVTA   80 (422)
T ss_dssp             TTHHHHHHSCCCCCCSSCCCHHHHHHHHHHHHHHHHHHTTSBCCCSSCCC-CSCCTTHHHHHTCCTTBTTTTTTHHHHHH
T ss_pred             CccchhhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhccCCcCCCCCCc-ccHHHHHHHHhccccccHHHhChHHHHHH
Confidence            57899999999999999999999999999999999999999999998865 45677888889999999999999999999


Q ss_pred             HHHHHHhcccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccchhHHHHHHHHHHHHHHHHHHHH
Q 018674           90 GLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGIIIAIGEAVAYVLSGMYGSVNQLGVGNAILIIVQLCFAGIIVICLD  169 (352)
Q Consensus        90 sII~QLL~~~~l~~l~~~~~~gr~k~~~~tr~ltl~la~iQa~~~~~~~~~~~~~~~~~~~~~~~vl~L~aGs~~v~wL~  169 (352)
                      |||||||+..+++++|+|+||||||+|++||++|+++|++||.+++.++.++.   .+....++++++|++|++++||||
T Consensus        81 SIImQLL~~~~l~~~~~~~~~gr~k~~~~tr~ltl~la~iQa~~~~~~~~~~~---~~~~~~~~iv~~L~aGt~~lmwL~  157 (422)
T d1rh5a_          81 GIIMQLLVGSGIIQMDLSIPENRALFQGCQKLLSIIMCFVEAVLFVGAGAFGI---LTPLLAFLVIIQIAFGSIILIYLD  157 (422)
T ss_dssp             HHHHHHHHHHTTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCC---CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC---CCchHHHHHHHHHHHHHHHHHHHH
Confidence            99999999889999999999999999999999999999999999987644432   234566788999999999999999


Q ss_pred             HhhhhccCcCcchHHHHHHHHHHHhhhhhcCchhhcccccccccchHHHHHHHHHhcchhHHHHHHHHhhcCCccHHHHH
Q 018674          170 ELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRNDKVRALREAFYRQNLPNVTNLL  249 (352)
Q Consensus       170 e~it~g~GiGnGiSLiI~~gI~~~l~~~~fsp~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~lp~l~~~~  249 (352)
                      |+||| ||+|||+|++|++|||++++|+.++|...           ...+.+.+.++            ...++++..++
T Consensus       158 E~It~-~GiGnGiSLiI~~gI~~~i~~~~~~~~~~-----------~~~~~~~~~~~------------~~~~~~~~~l~  213 (422)
T d1rh5a_         158 EIVSK-YGIGSGIGLFIAAGVSQTIFVGALGPEGY-----------LWKFLNSLIQG------------VPNIEYIAPII  213 (422)
T ss_dssp             HHHHH-HSSSCHHHHHHHHHHHHHHHHHHHSTTCH-----------HHHHHHHTTTT------------CCCGGGTHHHH
T ss_pred             HHHhh-cCcccchHHHHHHHHHHHHHHhccchhHH-----------HHHHHHhhhcc------------cchHHHHHHHH
Confidence            99999 99999999999999999999999988532           12222211110            12245567778


Q ss_pred             HHHHHHHHHHhhcccEEEEeeeeeccCCcCcccccccccccchhHHHHHHHHHHHHHHHHHHhhhcCchhHHHhhhhccc
Q 018674          250 ATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLMYRRYSGNFFVNLLGKWKE  329 (352)
Q Consensus       250 ~~l~~~~~~v~~~~~~~rIPi~~~~~~~~~~~~PiKln~aGvmPiIfassll~~p~~i~~~l~~~~~~~~~~~~l~~~~~  329 (352)
                      .+++++++++|+|++|||||++|+|.+++++|+|+|+||+|+||+|||+|++++|+++++++++...     +.+++|.+
T Consensus       214 ~~i~i~~~vv~~~~~~~~IPv~~~~~~~~~~~~PiKln~aGviPiIfassll~~p~~i~~~l~~~~~-----~~l~~~~~  288 (422)
T d1rh5a_         214 GTIIVFLMVVYAECMRVEIPLAHGRIKGAVGKYPIKFVYVSNIPVILAAALFANIQLWGLALYRMGI-----PILGHYEG  288 (422)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECCCSSSTTCCCEEEEESCTTCSHHHHHHHHHHHHHHHHHHHHHTTSC-----CTTCCBCS
T ss_pred             HHHHHHHHHHHHHHhhhccccccccccccccccceeechhhHHHHHHHHHHHHhHHHHHHhhhhccc-----ccccccCC
Confidence            8888889999999999999999999999999999999999999999999999999999999865432     24555532


Q ss_pred             cccCCCccccceeEEEEEcCCC
Q 018674          330 SEYSGGQYVPVGGIAYYITAPS  351 (352)
Q Consensus       330 ~~~~~~~~~~~~~l~y~~~pp~  351 (352)
                           +  +++.+++||++||.
T Consensus       289 -----~--~~~~~i~~~~~~~~  303 (422)
T d1rh5a_         289 -----G--RAVDGIAYYLSTPY  303 (422)
T ss_dssp             -----S--SBSSSTTGGGCCCC
T ss_pred             -----C--chHHHHHHHhCCcc
Confidence                 2  58888999888875