Citrus Sinensis ID: 018715

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-
Protein Sequence
MAIELSNLMERSLSMLSSDHKSVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSLPVQAIPSCMGTPS
Secondary Structure (PSIPRED)
ccccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHccccccEEEEEEEccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHEEccccccccEEEccccEEEEEcccHEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHccccHEHHEHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcHHcccccccHHHHHHHHHHEEEEEccccc
Coil and Loop (DISEMBL)
MAIELSNLMERSLSMLSSDHKSVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLttngtsshvLMFSEDlffiyllppiifnagFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFkqmnigtlkigdyLAIGAIFAATDSVCTlqvlnqdetpllYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGmdaldiekwrvvrdslpvqaipscmgtps
Flexible Loop (DISEMBL)
MAIELSNLMERSLSMLSSDHKSVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSLpvqaipscmgtps
Low Complexity Region (SEG)
MAIELSNLMERSLSMLSSDHKSVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSLPVQAIPSCMGTPS
Disordered region (IsUnstruct)
**********************VVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSLPVQAI********
Disordered Region (DISOPRED)
*******************HKSVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSLPVQAIPSCMGTPS
Disordered Region (DISEMBL)
MAIELSNLMERSLSMLSSDHKSVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSLPVQAIPSCMGTPS
Disordered Region (DISPRO)
**************MLSSDHKSVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSLPVQAIPSCMGT**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAIELSNLMERSLSMLSSDHKSVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSLPVQAIPSCMGTPS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	351	2.2.26 [Sep-21-2011]
Q84WG1	503	Sodium/hydrogen exchanger	yes	no	0.974	0.679	0.819	1e-163
Q56XP4	546	Sodium/hydrogen exchanger	no	no	0.945	0.608	0.810	1e-158
Q68KI4	538	Sodium/hydrogen exchanger	no	no	0.948	0.618	0.789	1e-150
Q8S397	529	Sodium/hydrogen exchanger	no	no	0.925	0.614	0.64	1e-121
Q4L208	575	Sodium/hydrogen exchanger	yes	no	0.860	0.525	0.346	8e-43
Q8R4D1	576	Sodium/hydrogen exchanger	yes	no	0.860	0.524	0.346	9e-43
Q5ZJ75	574	Sodium/hydrogen exchanger	yes	no	0.863	0.527	0.347	1e-42
Q9Y2E8	581	Sodium/hydrogen exchanger	yes	no	0.863	0.521	0.344	3e-42
Q04121	633	Endosomal/prevacuolar sod	yes	no	0.786	0.436	0.323	8e-41
Q552S0	674	Sodium/hydrogen exchanger	yes	no	0.752	0.391	0.346	2e-38

>sp|Q84WG1|NHX3_ARATH Sodium/hydrogen exchanger 3 OS=Arabidopsis thaliana GN=NHX3 PE=2 SV=2

 Score =  574 bits (1480), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 281/343 (81%), Positives = 312/343 (90%), Gaps = 1/343 (0%)

Query: 1   MAIELSNLMERSLSMLSSDHKSVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGL 60
           M I LS ++E++ ++ +SDH SVVSMNLFVALLCACIV+GHLLEE RWMNESITALIIG 
Sbjct: 1   MVIGLSTMLEKTEALFASDHASVVSMNLFVALLCACIVLGHLLEETRWMNESITALIIGS 60

Query: 61  CTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVG 120
           CTGIVILL + G SS +L+FSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGA+G
Sbjct: 61  CTGIVILLISGGKSSRILVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAIG 120

Query: 121 TLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLV 180
           TLISFVIIS GA H F++MNIG L I DYLAIGAIF+ATDSVCTLQVLNQDETPLLYSLV
Sbjct: 121 TLISFVIISFGAKHLFEKMNIGDLTIADYLAIGAIFSATDSVCTLQVLNQDETPLLYSLV 180

Query: 181 FGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFII 240
           FGEGVVNDATSVVLFNAIQ FDL++IN +IAL+F G+FFYLFI ST LGV AGLLSAF+I
Sbjct: 181 FGEGVVNDATSVVLFNAIQRFDLTNINSAIALEFAGNFFYLFILSTALGVAAGLLSAFVI 240

Query: 241 KKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRV 300
           KKLY+GRHSTDREVALM+L+AYLSYMLAELF+LS ILTVFFCGIVMSHYTWHNVT+ S+V
Sbjct: 241 KKLYIGRHSTDREVALMMLLAYLSYMLAELFHLSSILTVFFCGIVMSHYTWHNVTDKSKV 300

Query: 301 TTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSLPVQAI 343
           TTKH FA +SF+AEIFIFLYVGMDALDIEKW VVR+S P Q+I
Sbjct: 301 TTKHTFAAMSFLAEIFIFLYVGMDALDIEKWDVVRNS-PGQSI 342

May act in low affinity electroneutral exchange of protons for cations such as Na(+) or K(+) across membranes. May also exchange Li(+) and Cs(+) with a lower affinity.
Arabidopsis thaliana (taxid: 3702)

>sp|Q56XP4|NHX2_ARATH Sodium/hydrogen exchanger 2 OS=Arabidopsis thaliana GN=NHX2 PE=1 SV=2

 Score =  557 bits (1436), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 269/332 (81%), Positives = 303/332 (91%)

Query: 6   SNLMERSLSMLSSDHKSVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIV 65
           ++L  + LS+ +SDH SVVS+NLFVALLCACIVIGHLLEENRWMNESITAL+IGL TG+V
Sbjct: 5   ASLTSKMLSVSTSDHASVVSLNLFVALLCACIVIGHLLEENRWMNESITALLIGLGTGVV 64

Query: 66  ILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISF 125
           ILL + G +SH+L+FSEDLFFIYLLPPIIFNAGFQVKKKQFFRNF+TIM FGA+GT++S 
Sbjct: 65  ILLISRGKNSHLLVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFVTIMAFGAIGTVVSC 124

Query: 126 VIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGV 185
            IIS GA+ FFK+++IGT  +GD+LAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGV
Sbjct: 125 TIISLGAIQFFKKLDIGTFDLGDFLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGV 184

Query: 186 VNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYM 245
           VNDATSVVLFNAIQSFDL+H+N   A +F+G+FFYLF+ ST LGV  GL+SA++IKKLY 
Sbjct: 185 VNDATSVVLFNAIQSFDLTHLNHEAAFQFLGNFFYLFLLSTGLGVATGLISAYVIKKLYF 244

Query: 246 GRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHA 305
           GRHSTDREVALM+LMAYLSYMLAELF LSGILTVFFCGIVMSHYTWHNVTESSR+TTKHA
Sbjct: 245 GRHSTDREVALMMLMAYLSYMLAELFALSGILTVFFCGIVMSHYTWHNVTESSRITTKHA 304

Query: 306 FATLSFVAEIFIFLYVGMDALDIEKWRVVRDS 337
           FATLSF+AE FIFLYVGMDALDIEKWR V DS
Sbjct: 305 FATLSFLAETFIFLYVGMDALDIEKWRFVSDS 336

Acts in low affinity electroneutral exchange of protons for cations such as Na(+) or K(+) across membranes. May also exchange Li(+) and Cs(+) with a lower affinity. Involved in vacuolar ion compartmentalization necessary for cell volume regulation and cytoplasmic Na(+) detoxification.

Arabidopsis thaliana (taxid: 3702)

>sp|Q68KI4|NHX1_ARATH Sodium/hydrogen exchanger 1 OS=Arabidopsis thaliana GN=NHX1 PE=1 SV=2

 Score =  530 bits (1365), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 263/333 (78%), Positives = 297/333 (89%)

Query: 5   LSNLMERSLSMLSSDHKSVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGI 64
           L +L+ +  S+ +SDH SVV++NLFVALLCACIV+GHLLEENRWMNESITAL+IGL TG+
Sbjct: 2   LDSLVSKLPSLSTSDHASVVALNLFVALLCACIVLGHLLEENRWMNESITALLIGLGTGV 61

Query: 65  VILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLIS 124
            ILL + G SSH+L+FSEDLFFIYLLPPIIFNAGFQVKKKQFFRNF+TIMLFGAVGT+IS
Sbjct: 62  TILLISKGKSSHLLVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFVTIMLFGAVGTIIS 121

Query: 125 FVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEG 184
             IIS G   FFK+++IGT  +GDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEG
Sbjct: 122 CTIISLGVTQFFKKLDIGTFDLGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEG 181

Query: 185 VVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLY 244
           VVNDATSVV+FNAIQSFDL+H+N   A   +G+F YLF+ ST+LG   GL+SA++IKKLY
Sbjct: 182 VVNDATSVVVFNAIQSFDLTHLNHEAAFHLLGNFLYLFLLSTLLGAATGLISAYVIKKLY 241

Query: 245 MGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKH 304
            GRHSTDREVALM+LMAYLSYMLAELF LSGILTVFFCGIVMSHYTWHNVTESSR+TTKH
Sbjct: 242 FGRHSTDREVALMMLMAYLSYMLAELFDLSGILTVFFCGIVMSHYTWHNVTESSRITTKH 301

Query: 305 AFATLSFVAEIFIFLYVGMDALDIEKWRVVRDS 337
            FATLSF+AE FIFLYVGMDALDI+KWR V D+
Sbjct: 302 TFATLSFLAETFIFLYVGMDALDIDKWRSVSDT 334

Acts in low affinity electroneutral exchange of protons for cations such as Na(+) or K(+) across membranes. Can also exchange Li(+) and Cs(+) with a lower affinity. Involved in vacuolar ion compartmentalization necessary for cell volume regulation and cytoplasmic Na(+) detoxification. Required during leaves expansion, probably to stimulate epidermal cell expansion. Confers competence to grow in high salinity conditions.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S397|NHX4_ARATH Sodium/hydrogen exchanger 4 OS=Arabidopsis thaliana GN=NHX4 PE=2 SV=2

 Score =  436 bits (1122), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 208/325 (64%), Positives = 260/325 (80%)

Query: 8   LMERSLSMLSSDHKSVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVIL 67
           L E   + L+++H  V+ +++F+A+LC C+VIGHLLEENRW+NESITA+++G  +G VIL
Sbjct: 5   LTEFVTNKLAAEHPQVIPISVFIAILCLCLVIGHLLEENRWVNESITAILVGAASGTVIL 64

Query: 68  LTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVI 127
           L + G SSH+L+F E+LFFIYLLPPIIFNAGFQVKKK+FF NF+TIM FG +G  IS VI
Sbjct: 65  LISKGKSSHILVFDEELFFIYLLPPIIFNAGFQVKKKKFFHNFLTIMSFGVIGVFISTVI 124

Query: 128 ISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVN 187
           IS G    F ++    L   DYLAIG IF++TD+VCTLQ+L+QDETPLLYSLVFGEGVVN
Sbjct: 125 ISFGTWWLFPKLGFKGLSARDYLAIGTIFSSTDTVCTLQILHQDETPLLYSLVFGEGVVN 184

Query: 188 DATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGR 247
           DATSVVLFNA+Q      +    AL+  G+F YLF  ST+LG+  GL+++F++K LY GR
Sbjct: 185 DATSVVLFNAVQKIQFESLTGWTALQVFGNFLYLFSTSTLLGIGVGLITSFVLKTLYFGR 244

Query: 248 HSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFA 307
           HST RE+A+M+LMAYLSYMLAELF LSGILTVFFCG++MSHY  +NVTESSR+T++H FA
Sbjct: 245 HSTTRELAIMVLMAYLSYMLAELFSLSGILTVFFCGVLMSHYASYNVTESSRITSRHVFA 304

Query: 308 TLSFVAEIFIFLYVGMDALDIEKWR 332
            LSF+AE FIFLYVG DALD  KW+
Sbjct: 305 MLSFIAETFIFLYVGTDALDFTKWK 329

May act in low affinity electroneutral exchange of protons for cations such as Na(+) or K(+) across membranes. May also exchange Li(+) and Cs(+) with a lower affinity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q4L208|SL9A8_RAT Sodium/hydrogen exchanger 8 OS=Rattus norvegicus GN=Slc9a8 PE=2 SV=1

 Score =  174 bits (441), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 112/323 (34%), Positives = 176/323 (54%), Gaps = 21/323 (6%)

Query: 17  SSDHKSVVSMNLFVALL--CACIVIGHLLEENR--WMNESITALIIGLCTGIVILL---T 69
           +   +    M +F +LL    CI++ HLL   R  ++ ES+  + +G+  G VI +    
Sbjct: 45  AQQEEQSSGMTIFFSLLVLAICIILVHLLIRYRLHFLPESVAVVSLGILMGAVIKVIEFK 104

Query: 70  TNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIIS 129
                    MF  ++FF+ LLPPIIF +G+ + K  FF+N  +I LF   GT IS  ++ 
Sbjct: 105 KLANWKEEEMFRPNMFFLLLLPPIIFESGYSLHKGNFFQNIGSITLFAVFGTAISAFVV- 163

Query: 130 AGAVHFFKQMN-IGTLKIGDYLAIGAIFAATDSVCTLQVLNQ-DETPLLYSLVFGEGVVN 187
            G ++F  Q + I  L + D  A G++ +A D V T+ + N     P+L  LVFGE ++N
Sbjct: 164 GGGIYFLGQADVISKLNMTDSFAFGSLISAVDPVATIAIFNALHVDPVLNMLVFGESILN 223

Query: 188 DATSVVLFNAIQSFDLSHIN-------LSIALKFVGSFFYLFIASTMLGVIAGLLSAFII 240
           DA S+VL N  +     H++        S AL   G F  +F  S  LG + GL+SA ++
Sbjct: 224 DAVSIVLTNTAEGLTRKHMSDVSGWQTFSQAL---GYFLKMFFGSAALGTLTGLISALVL 280

Query: 241 KKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRV 300
           K + + R +   E  +MI+ AYL Y LAE   LSGI+ + F GIVMSHYT HN++  +++
Sbjct: 281 KHIDL-RKTPSLEFGMMIIFAYLPYGLAEGISLSGIMAILFSGIVMSHYTHHNLSPVTQI 339

Query: 301 TTKHAFATLSFVAEIFIFLYVGM 323
             +    T++F+ E  +F ++G+
Sbjct: 340 LMQQTLRTVAFLCETCVFAFLGL 362

Involved in pH regulation to eliminate acids generated by active metabolism or to counter adverse environmental conditions. Major proton extruding system driven by the inward sodium ion chemical gradient. Plays an important role in signal transduction.

Rattus norvegicus (taxid: 10116)

>sp|Q8R4D1|SL9A8_MOUSE Sodium/hydrogen exchanger 8 OS=Mus musculus GN=Slc9a8 PE=2 SV=1

 Score =  174 bits (441), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 112/323 (34%), Positives = 176/323 (54%), Gaps = 21/323 (6%)

Query: 17  SSDHKSVVSMNLFVALL--CACIVIGHLLEENR--WMNESITALIIGLCTGIVILL---T 69
           +   +    M +F +LL    CI++ HLL   R  ++ ES+  + +G+  G VI +    
Sbjct: 46  AQQEEQSSGMTIFFSLLVLAICIILVHLLIRYRLHFLPESVAVVSLGILMGAVIKVIEFK 105

Query: 70  TNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIIS 129
                    MF  ++FF+ LLPPIIF +G+ + K  FF+N  +I LF   GT IS  ++ 
Sbjct: 106 KLANWKEEEMFRPNMFFLLLLPPIIFESGYSLHKGNFFQNIGSITLFAVFGTAISAFVV- 164

Query: 130 AGAVHFFKQMN-IGTLKIGDYLAIGAIFAATDSVCTLQVLNQ-DETPLLYSLVFGEGVVN 187
            G ++F  Q + I  L + D  A G++ +A D V T+ + N     P+L  LVFGE ++N
Sbjct: 165 GGGIYFLGQADVISKLNMTDSFAFGSLISAVDPVATIAIFNALHVDPVLNMLVFGESILN 224

Query: 188 DATSVVLFNAIQSFDLSHIN-------LSIALKFVGSFFYLFIASTMLGVIAGLLSAFII 240
           DA S+VL N  +     H++        S AL   G F  +F  S  LG + GL+SA ++
Sbjct: 225 DAVSIVLTNTAEGLTRKHMSDVSGWQTFSQAL---GYFLKMFFGSAALGTLTGLISALVL 281

Query: 241 KKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRV 300
           K + + R +   E  +MI+ AYL Y LAE   LSGI+ + F GIVMSHYT HN++  +++
Sbjct: 282 KHIDL-RKTPSLEFGMMIIFAYLPYGLAEGISLSGIMAILFSGIVMSHYTHHNLSPVTQI 340

Query: 301 TTKHAFATLSFVAEIFIFLYVGM 323
             +    T++F+ E  +F ++G+
Sbjct: 341 LMQQTLRTVAFLCETCVFAFLGL 363

Involved in pH regulation to eliminate acids generated by active metabolism or to counter adverse environmental conditions. Major proton extruding system driven by the inward sodium ion chemical gradient. Plays an important role in signal transduction.

Mus musculus (taxid: 10090)

>sp|Q5ZJ75|SL9A8_CHICK Sodium/hydrogen exchanger 8 OS=Gallus gallus PE=2 SV=1

 Score =  174 bits (440), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 112/322 (34%), Positives = 179/322 (55%), Gaps = 19/322 (5%)

Query: 17  SSDHKSVVSMNLFVALL--CACIVIGHLLEENR--WMNESITALIIGLCTGIVILLTTN- 71
           +   +    M +F +LL    CI++ HLL + R  ++ ES+  + +G+  G  I +    
Sbjct: 44  AQQEEQSSGMTIFFSLLVLAICIILVHLLIKYRLHFLPESVAVVSLGIIMGAFIKIIEAQ 103

Query: 72  --GTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIIS 129
                    MF  ++FF+ LLPPIIF +G+ + K  FF+N  +I LF   GT IS  I+ 
Sbjct: 104 KLANWKEEEMFRPNMFFLLLLPPIIFESGYSLHKGNFFQNIGSITLFSVFGTAISAFIV- 162

Query: 130 AGAVHFFKQMN-IGTLKIGDYLAIGAIFAATDSVCTLQVLNQ-DETPLLYSLVFGEGVVN 187
            G ++F  Q + I  L + D  A G++ +A D V T+ + N  +  P+L  LVFGE ++N
Sbjct: 163 GGGIYFLGQADVIYKLNMTDSFAFGSLISAVDPVATIAIFNALNVDPVLNMLVFGESILN 222

Query: 188 DATSVVLFNAIQSFDLSHINLSIA------LKFVGSFFYLFIASTMLGVIAGLLSAFIIK 241
           DA S+VL N  +   L+  N+S        L+ +G F  +F  S  LG + GL+SA ++K
Sbjct: 223 DAVSIVLTNTAEG--LTRENMSDVSGWQTFLQALGYFLKMFFGSAALGTLTGLISALVLK 280

Query: 242 KLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVT 301
            + + R +   E  +MI+ AYL Y LAE   LSGI+ + F GIVMSHYT HN++  +++ 
Sbjct: 281 HIDL-RKTPSLEFGMMIIFAYLPYGLAEGISLSGIMAILFSGIVMSHYTHHNLSPVTQIL 339

Query: 302 TKHAFATLSFVAEIFIFLYVGM 323
            +    T++F+ E  +F ++G+
Sbjct: 340 MQQTLRTVAFMCETCVFAFLGL 361

Involved in pH regulation to eliminate acids generated by active metabolism or to counter adverse environmental conditions. Major proton extruding system driven by the inward sodium ion chemical gradient. Plays an important role in signal transduction.

Gallus gallus (taxid: 9031)

>sp|Q9Y2E8|SL9A8_HUMAN Sodium/hydrogen exchanger 8 OS=Homo sapiens GN=SLC9A8 PE=1 SV=4

 Score =  172 bits (436), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 111/322 (34%), Positives = 177/322 (54%), Gaps = 19/322 (5%)

Query: 17  SSDHKSVVSMNLFVALL--CACIVIGHLLEENR--WMNESITALIIGLCTGIVILL---T 69
           +   +    M +F +LL    CI++ HLL   R  ++ ES+  + +G+  G VI +    
Sbjct: 51  AQQEEQSSGMTIFFSLLVLAICIILVHLLIRYRLHFLPESVAVVSLGILMGAVIKIIEFK 110

Query: 70  TNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIIS 129
                    MF  ++FF+ LLPPIIF +G+ + K  FF+N  +I LF   GT IS  ++ 
Sbjct: 111 KLANWKEEEMFRPNMFFLLLLPPIIFESGYSLHKGNFFQNIGSITLFAVFGTAISAFVV- 169

Query: 130 AGAVHFFKQMN-IGTLKIGDYLAIGAIFAATDSVCTLQVLNQ-DETPLLYSLVFGEGVVN 187
            G ++F  Q + I  L + D  A G++ +A D V T+ + N     P+L  LVFGE ++N
Sbjct: 170 GGGIYFLGQADVISKLNMTDSFAFGSLISAVDPVATIAIFNALHVDPVLNMLVFGESILN 229

Query: 188 DATSVVLFNAIQSFDLSHINLSIA------LKFVGSFFYLFIASTMLGVIAGLLSAFIIK 241
           DA S+VL N  +   L+  N+S        L+ +  F  +F  S  LG + GL+SA ++K
Sbjct: 230 DAVSIVLTNTAEG--LTRKNMSDVSGWQTFLQALDYFLKMFFGSAALGTLTGLISALVLK 287

Query: 242 KLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVT 301
            + + R +   E  +MI+ AYL Y LAE   LSGI+ + F GIVMSHYT HN++  +++ 
Sbjct: 288 HIDL-RKTPSLEFGMMIIFAYLPYGLAEGISLSGIMAILFSGIVMSHYTHHNLSPVTQIL 346

Query: 302 TKHAFATLSFVAEIFIFLYVGM 323
            +    T++F+ E  +F ++G+
Sbjct: 347 MQQTLRTVAFLCETCVFAFLGL 368

Involved in pH regulation to eliminate acids generated by active metabolism or to counter adverse environmental conditions. Major proton extruding system driven by the inward sodium ion chemical gradient. Plays an important role in signal transduction.

Homo sapiens (taxid: 9606)

>sp|Q04121|NHX1_YEAST Endosomal/prevacuolar sodium/hydrogen exchanger OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NHX1 PE=1 SV=1

 Score =  167 bits (424), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 91/281 (32%), Positives = 168/281 (59%), Gaps = 5/281 (1%)

Query: 47  RWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQF 106
           R ++E++ ++  G+  G++I ++        + F+   FF  LLPPII N+G+++ +  F
Sbjct: 87  RAVHETVLSIFYGMVIGLIIRMSPGHYIQDTVTFNSSYFFNVLLPPIILNSGYELNQVNF 146

Query: 107 FRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKI--GDYLAIGAIFAATDSVCT 164
           F N ++I++F   GT IS V+I    ++ +  + + ++ I   D +++GA  +ATD V  
Sbjct: 147 FNNMLSILIFAIPGTFISAVVIGI-ILYIWTFLGLESIDISFADAMSVGATLSATDPVTI 205

Query: 165 LQVLNQDE-TPLLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFI 223
           L + N  +  P LY+++FGE ++NDA S+V+F   Q F       S   +  G F   F 
Sbjct: 206 LSIFNAYKVDPKLYTIIFGESLLNDAISIVMFETCQKFHGQPATFSSVFEGAGLFLMTFS 265

Query: 224 ASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCG 283
            S ++GV+ G+L A ++K  ++ R+    E  L++L+AY SY  +   ++SGI+++ FCG
Sbjct: 266 VSLLIGVLIGILVALLLKHTHIRRYP-QIESCLILLIAYESYFFSNGCHMSGIVSLLFCG 324

Query: 284 IVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMD 324
           I + HY ++N++  S++T K+ F  L+ ++E FIF+Y+G++
Sbjct: 325 ITLKHYAYYNMSRRSQITIKYIFQLLARLSENFIFIYLGLE 365

Endosomal/prevacuolar electroneutral Na(+)/H(+) exchanger which mediates intracellular sequestration of Na(+) cations, regulates vacuolar pH and contributes to osmotolerance following sudden exposure to hyperosmotic media. Contributes also to the postdiauxic/stationary phase resistance to osmotic stress and allows for the continued growth of cells until the acquired osmotolerance response can occur. Involved in hygromycin resistance probably through its influence on the electrochemical proton gradient affecting secondarily the entrance of hygromycin. Mediates pH-dependent vesicle trafficking out of the endosome. Contributes to K(+) sequestration and homeostasis.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q552S0|NHE1_DICDI Sodium/hydrogen exchanger 1 OS=Dictyostelium discoideum GN=nhe1 PE=2 SV=1

 Score =  160 bits (404), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 96/277 (34%), Positives = 163/277 (58%), Gaps = 13/277 (4%)

Query: 51  ESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNF 110
           ES+  +  G+  GIV     +   +HV+ F  + FF+++LP IIF  G+ + K  FF N 
Sbjct: 149 ESVAVVTYGIILGIVFRFFYSDIVNHVVSFEPENFFLFILPTIIFETGYSLHKTDFFNNI 208

Query: 111 MTIMLFGAVGTLISFVIISAGAVHFFKQMNIG-TLKIGDYLAIGAIFAATDSVCTL---Q 166
             I++F   GT+I+F+++  G ++      +   L + D  A G+I ++TD VCTL   Q
Sbjct: 209 GPILMFAVFGTIITFLVVGFG-IYIVGYFGVSIALSLKDSFAFGSIISSTDPVCTLAIFQ 267

Query: 167 VLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIAST 226
            LN D  P+LY LV GE ++NDATS++L++ ++      I +S A+     F  + I S 
Sbjct: 268 ALNVD--PMLYILVLGESILNDATSMMLYSVVEDTSTRDIIISCAM-----FTVVAIGSV 320

Query: 227 MLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVM 286
           +LGV+  LL + I+K + +G+     E   M++ +Y+SY+LA    +SG+L VFF GI +
Sbjct: 321 ILGVVMALLLSLILKWINIGKFPA-LETIFMVMFSYMSYVLAGALDISGVLAVFFFGITL 379

Query: 287 SHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGM 323
           + Y  ++++  +++T+   F T +F++E F+FLY G+
Sbjct: 380 NQYGAYSLSPYTKLTSGQLFRTAAFISETFLFLYFGL 416

Regulation of intracellular pH homeostasis in response to cAMP, which is essential for chemotaxis. Necessary for F-actin localization and the kinetics of actin polymerization during chemotaxis and cell polarity but not for directional sensing.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	351
225432394	541	PREDICTED: sodium/hydrogen exchanger 2 [	0.971	0.630	0.854	1e-166
224110480	526	sodium proton exchanger [Populus trichoc	0.920	0.614	0.876	1e-163
297833384	554	hypothetical protein ARALYDRAFT_896752 [	0.974	0.617	0.833	1e-163
356564575	533	PREDICTED: sodium/hydrogen exchanger 2-l	0.974	0.641	0.819	1e-163
380706787	554	vacuolar Na+/H+ antiporter (chloroplast)	0.960	0.608	0.846	1e-163
255317075	536	Na+/H+ exchanger 4 [Populus euphratica]	0.948	0.621	0.849	1e-163
290965740	541	Na/H antiporter [Bruguiera gymnorhiza]	0.948	0.615	0.861	1e-162
52546974	546	Na+/H+ antiporter [Iris lactea]	0.928	0.597	0.856	1e-162
150247009	556	vacuolar Na+/H+ antiporter [Mesembryanth	0.960	0.606	0.837	1e-162
33327263	554	Na/H antiporter Nhx1 [Tetragonia tetrago	0.960	0.608	0.837	1e-161

>gi|225432394|ref|XP_002277061.1| PREDICTED: sodium/hydrogen exchanger 2 [Vitis vinifera] gi|147792256|emb|CAN61480.1| hypothetical protein VITISV_010931 [Vitis vinifera] gi|297736919|emb|CBI26120.3| unnamed protein product [Vitis vinifera]

 Score =  591 bits (1523), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 294/344 (85%), Positives = 318/344 (92%), Gaps = 3/344 (0%)

Query: 1   MAIELSNLMERSLSMLS-SDHKSVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIG 59
           M  EL +++ + L M+S SDH SVVSMNLFVALLCACIV+GHLLEE RWMNESITAL +G
Sbjct: 1   MGFELGSVVMK-LGMVSTSDHSSVVSMNLFVALLCACIVVGHLLEEYRWMNESITALALG 59

Query: 60  LCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAV 119
           LCTGI+ILLTT G SSH+L+FSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGA+
Sbjct: 60  LCTGIIILLTTRGKSSHILVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAI 119

Query: 120 GTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSL 179
           GTLISF IIS GA+HFFK+M IG+L IGDYLA+GAIF+ATDSVCTLQVLNQDETPLLYSL
Sbjct: 120 GTLISFGIISLGAIHFFKKMKIGSLDIGDYLALGAIFSATDSVCTLQVLNQDETPLLYSL 179

Query: 180 VFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFI 239
           VFGEGVVNDATSVVLFNAIQSFDLSHI+ SIAL+F+G+F YLFI STMLGV AGLLSA+I
Sbjct: 180 VFGEGVVNDATSVVLFNAIQSFDLSHIDSSIALQFIGNFLYLFITSTMLGVFAGLLSAYI 239

Query: 240 IKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSR 299
           IKKLY GRHSTDREVA+MILMAYLSYMLAELFYLS ILTVFFCGIVMSHYTWHNVTESSR
Sbjct: 240 IKKLYFGRHSTDREVAIMILMAYLSYMLAELFYLSAILTVFFCGIVMSHYTWHNVTESSR 299

Query: 300 VTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSLPVQAI 343
           VTTKHAFATLSFVAEIFIFLYVGMDALDIEKWR V DS P ++I
Sbjct: 300 VTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRFVSDS-PGKSI 342

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110480|ref|XP_002315532.1| sodium proton exchanger [Populus trichocarpa] gi|222864572|gb|EEF01703.1| sodium proton exchanger [Populus trichocarpa]

 Score =  581 bits (1498), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 283/323 (87%), Positives = 303/323 (93%)

Query: 15  MLSSDHKSVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTS 74
           MLSSDH SVV +NLFVALLCACIVIGHLLEE RWMNESITAL +GLCTG+VILLTT G S
Sbjct: 1   MLSSDHSSVVPINLFVALLCACIVIGHLLEEQRWMNESITALAVGLCTGVVILLTTGGKS 60

Query: 75  SHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVH 134
           SH+L+FSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTI+LFGAVGTLIS  IIS GA H
Sbjct: 61  SHLLVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIILFGAVGTLISTAIISIGATH 120

Query: 135 FFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVL 194
           FFK+MNI +L+IGDYLAIGAIF+ATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVL
Sbjct: 121 FFKKMNISSLRIGDYLAIGAIFSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVL 180

Query: 195 FNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREV 254
           F+AIQS DLSHIN SIA +F+G+F YLFI+ST+LGV+ GLLSA+IIKKLY GRHSTDREV
Sbjct: 181 FHAIQSIDLSHINSSIAAEFLGNFLYLFISSTILGVLTGLLSAYIIKKLYFGRHSTDREV 240

Query: 255 ALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAE 314
           ALMILMAYLSYMLAELFYLS ILTVFFCGIVMSHYTWHNVTESSR+TTKHAFAT SFVAE
Sbjct: 241 ALMILMAYLSYMLAELFYLSAILTVFFCGIVMSHYTWHNVTESSRITTKHAFATWSFVAE 300

Query: 315 IFIFLYVGMDALDIEKWRVVRDS 337
           IFIFLYVGMDALDIEKW+VV DS
Sbjct: 301 IFIFLYVGMDALDIEKWKVVSDS 323

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297833384|ref|XP_002884574.1| hypothetical protein ARALYDRAFT_896752 [Arabidopsis lyrata subsp. lyrata] gi|297330414|gb|EFH60833.1| hypothetical protein ARALYDRAFT_896752 [Arabidopsis lyrata subsp. lyrata]

 Score =  581 bits (1498), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 286/343 (83%), Positives = 312/343 (90%), Gaps = 1/343 (0%)

Query: 1   MAIELSNLMERSLSMLSSDHKSVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGL 60
           M I L+ ++E+S ++ +SDH SVVSMNLFVALLCACIV+GHLLEE RWMNESITALIIG 
Sbjct: 1   MVIGLTTMLEKSEALFASDHASVVSMNLFVALLCACIVLGHLLEETRWMNESITALIIGS 60

Query: 61  CTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVG 120
           CTGIVILL + G SS +L+FSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVG
Sbjct: 61  CTGIVILLISGGKSSRILVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVG 120

Query: 121 TLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLV 180
           TLISFVIIS GA HFFK+MNIG L I DYLAIGAIF+ATDSVCTLQVLNQDETPLLYSLV
Sbjct: 121 TLISFVIISLGAKHFFKKMNIGDLTISDYLAIGAIFSATDSVCTLQVLNQDETPLLYSLV 180

Query: 181 FGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFII 240
           FGEGVVNDATSVVLFNAIQ FDL+HIN +IAL+F G+FFYLFI ST LGV AGLLSAF+I
Sbjct: 181 FGEGVVNDATSVVLFNAIQRFDLTHINSAIALEFAGNFFYLFILSTALGVAAGLLSAFVI 240

Query: 241 KKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRV 300
           KKLY+GRHSTDREVALM+L+AYLSYMLAELF+LS ILTVFFCGIVMSHYTWHNVT+ S+V
Sbjct: 241 KKLYIGRHSTDREVALMMLLAYLSYMLAELFHLSSILTVFFCGIVMSHYTWHNVTDKSKV 300

Query: 301 TTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSLPVQAI 343
           TTKH FA LSF+AEIFIFLYVGMDALDIEKW VVR S P Q+I
Sbjct: 301 TTKHTFAALSFLAEIFIFLYVGMDALDIEKWDVVRSS-PGQSI 342

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564575|ref|XP_003550527.1| PREDICTED: sodium/hydrogen exchanger 2-like [Glycine max]

 Score =  580 bits (1496), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 281/343 (81%), Positives = 317/343 (92%), Gaps = 1/343 (0%)

Query: 1   MAIELSNLMERSLSMLSSDHKSVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGL 60
           MA+E   L ++  ++++SDH SVVSMNLFVALLCACI+IGHLLEENRW+NESITAL+IGL
Sbjct: 1   MAVEALYLYDKLTTVMTSDHASVVSMNLFVALLCACIIIGHLLEENRWINESITALLIGL 60

Query: 61  CTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVG 120
           CTG+ IL TT G SSH+L+FSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVG
Sbjct: 61  CTGVFILFTTGGKSSHILVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVG 120

Query: 121 TLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLV 180
           TLISF IIS GA+HFF++++IG+LKIGD+LAIGAIF+ATDSVCTLQVLNQDETPLLYSLV
Sbjct: 121 TLISFCIISLGAIHFFQKLDIGSLKIGDFLAIGAIFSATDSVCTLQVLNQDETPLLYSLV 180

Query: 181 FGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFII 240
           FGEGVVNDATSVVLF AIQ+FDLSHI+L+ AL+ +G+F YLFIAST+LG+ AGLLSAFII
Sbjct: 181 FGEGVVNDATSVVLFKAIQNFDLSHIDLTTALQLLGNFLYLFIASTVLGIFAGLLSAFII 240

Query: 241 KKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRV 300
           KKLY G+HSTDREVALM+LMAYLSYML+ELF LS ILTVFFCGIVMSHYTWHNVTESSRV
Sbjct: 241 KKLYFGKHSTDREVALMVLMAYLSYMLSELFSLSAILTVFFCGIVMSHYTWHNVTESSRV 300

Query: 301 TTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSLPVQAI 343
           TTKH FATLSF+AEIFIFLYVGMDALDIEKWR+V  S P ++I
Sbjct: 301 TTKHVFATLSFIAEIFIFLYVGMDALDIEKWRIVSQS-PRKSI 342

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|380706787|gb|AFD97541.1| vacuolar Na+/H+ antiporter (chloroplast) [Sesuvium portulacastrum]

 Score =  580 bits (1496), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 286/338 (84%), Positives = 309/338 (91%), Gaps = 1/338 (0%)

Query: 1   MAIELSNLMERSLSMLS-SDHKSVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIG 59
           M  ELS+L+   L MLS SDH SVVSMNLFVALLCACIVIGHLLEENRWMNESITAL+IG
Sbjct: 1   MGFELSSLISNKLQMLSTSDHASVVSMNLFVALLCACIVIGHLLEENRWMNESITALMIG 60

Query: 60  LCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAV 119
           L TGIVILL + G SSH+L+FSEDLFFIYLLPPIIFNAGFQVKKKQFFRNF+TI+LFGA+
Sbjct: 61  LATGIVILLVSGGKSSHLLVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFITIILFGAL 120

Query: 120 GTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSL 179
           GTL+SF IIS GA+ FFK+++IG+L +GDYLAIGA FAATDSVCTLQVLNQDETPLLYSL
Sbjct: 121 GTLVSFTIISLGAMEFFKKLDIGSLDLGDYLAIGATFAATDSVCTLQVLNQDETPLLYSL 180

Query: 180 VFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFI 239
           VFGEGVVNDATSVVLFNAIQ+FDL+ I+  IALKF G+F YLF AST+LG I GLLSA+I
Sbjct: 181 VFGEGVVNDATSVVLFNAIQNFDLTRIDHRIALKFFGNFLYLFFASTLLGAITGLLSAYI 240

Query: 240 IKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSR 299
           IKKLY GRHSTDREVALM+LMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSR
Sbjct: 241 IKKLYFGRHSTDREVALMMLMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSR 300

Query: 300 VTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDS 337
           VTTKHAFATLSFVAE FIFLYVGMDALDIEKWR V DS
Sbjct: 301 VTTKHAFATLSFVAETFIFLYVGMDALDIEKWRFVSDS 338

Source: Sesuvium portulacastrum

Species: Sesuvium portulacastrum

Genus: Sesuvium

Family: Aizoaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255317075|gb|ACU01855.1| Na+/H+ exchanger 4 [Populus euphratica]

 Score =  580 bits (1494), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 283/333 (84%), Positives = 309/333 (92%)

Query: 5   LSNLMERSLSMLSSDHKSVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGI 64
           +++++ +  +MLSSDH SVV +NLFVALLCACIVIGHLLEE RWM+ESITAL +GLCTGI
Sbjct: 1   MADILWKMGAMLSSDHSSVVPINLFVALLCACIVIGHLLEEQRWMSESITALAVGLCTGI 60

Query: 65  VILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLIS 124
           VILLTT G SSH+L+FSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLIS
Sbjct: 61  VILLTTGGKSSHLLVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLIS 120

Query: 125 FVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEG 184
             IIS GA HF K+MNI +L+IGDYLAIGAIF+ATDSVCTLQVLNQDETPLLYSLVFGEG
Sbjct: 121 TAIISIGAAHFSKKMNISSLRIGDYLAIGAIFSATDSVCTLQVLNQDETPLLYSLVFGEG 180

Query: 185 VVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLY 244
           VVNDATSVVLF+AIQS DLSHIN SIA +F+G+F YLFI+ST+LGV+ GLLSA+IIKKLY
Sbjct: 181 VVNDATSVVLFHAIQSIDLSHINSSIAAEFLGNFLYLFISSTILGVLTGLLSAYIIKKLY 240

Query: 245 MGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKH 304
            GRHSTDREVALMILMAYLSYMLAELFYLS ILTVFFCGIVMSHYTWHNVTESSR+TTKH
Sbjct: 241 FGRHSTDREVALMILMAYLSYMLAELFYLSAILTVFFCGIVMSHYTWHNVTESSRITTKH 300

Query: 305 AFATLSFVAEIFIFLYVGMDALDIEKWRVVRDS 337
           AFAT SFVAEIFIFLYVGMDALDIEKW+VV DS
Sbjct: 301 AFATWSFVAEIFIFLYVGMDALDIEKWKVVSDS 333

Source: Populus euphratica

Species: Populus euphratica

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|290965740|gb|ADD70241.1| Na/H antiporter [Bruguiera gymnorhiza]

 Score =  578 bits (1489), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 287/333 (86%), Positives = 305/333 (91%)

Query: 5   LSNLMERSLSMLSSDHKSVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGI 64
           +S+++ R   + +SDH SVVSMNLFVALLCACIVI HLLEENRWMNESITALIIGLCTG+
Sbjct: 5   VSSVVSRLQMLYTSDHSSVVSMNLFVALLCACIVISHLLEENRWMNESITALIIGLCTGV 64

Query: 65  VILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLIS 124
           VILL + G SSH+L+FSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIML+GAVGTLIS
Sbjct: 65  VILLVSGGRSSHLLVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLYGAVGTLIS 124

Query: 125 FVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEG 184
             IIS GA   FK+M+IG+L +GDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEG
Sbjct: 125 CCIISVGATLAFKKMDIGSLDVGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEG 184

Query: 185 VVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLY 244
           VVNDATSVVLFNAIQSFDLSH + SIA +FVGSF YLF  ST+LGV  GLLSAFIIKKLY
Sbjct: 185 VVNDATSVVLFNAIQSFDLSHFSPSIAGQFVGSFLYLFFTSTVLGVFTGLLSAFIIKKLY 244

Query: 245 MGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKH 304
            GRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKH
Sbjct: 245 FGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKH 304

Query: 305 AFATLSFVAEIFIFLYVGMDALDIEKWRVVRDS 337
           AFATLSFVAEIFIFLYVGMDALDIEKWR V DS
Sbjct: 305 AFATLSFVAEIFIFLYVGMDALDIEKWRFVSDS 337

Source: Bruguiera gymnorhiza

Species: Bruguiera gymnorhiza

Genus: Bruguiera

Family: Rhizophoraceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|52546974|gb|AAU81619.1| Na+/H+ antiporter [Iris lactea]

 Score =  576 bits (1485), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 280/327 (85%), Positives = 305/327 (93%), Gaps = 1/327 (0%)

Query: 17  SSDHKSVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSH 76
           +SDH SVVS+NLFVALLCACIVIGHLLEENRWMNESITAL IGLCTG+VILLTTNG SSH
Sbjct: 18  TSDHASVVSINLFVALLCACIVIGHLLEENRWMNESITALAIGLCTGVVILLTTNGKSSH 77

Query: 77  VLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFF 136
           + +FSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIIS GA+  F
Sbjct: 78  IFVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISLGAIGLF 137

Query: 137 KQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFN 196
           ++MNIG L+IGD+LAIGAIF+ATDSVCTLQ+LNQDETPLLYSLVFGEGVVNDATSVVLFN
Sbjct: 138 RKMNIGPLEIGDFLAIGAIFSATDSVCTLQILNQDETPLLYSLVFGEGVVNDATSVVLFN 197

Query: 197 AIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVAL 256
           AIQ+FDL HI+  IA KF+G+FFYLF++ST LG  AGLLSA+IIKKLY GRHSTDREVAL
Sbjct: 198 AIQNFDLEHIDAGIAAKFIGNFFYLFVSSTFLGAFAGLLSAYIIKKLYYGRHSTDREVAL 257

Query: 257 MILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIF 316
           M+LMAYLSYMLAEL  LSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSF++EIF
Sbjct: 258 MMLMAYLSYMLAELLDLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFISEIF 317

Query: 317 IFLYVGMDALDIEKWRVVRDSLPVQAI 343
           +FLYVGMDALDIEKWR V DS P ++I
Sbjct: 318 LFLYVGMDALDIEKWRFVSDS-PGKSI 343

Source: Iris lactea

Species: Iris lactea

Genus: Iris

Family: Iridaceae

Order: Asparagales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|150247009|emb|CAN99589.1| vacuolar Na+/H+ antiporter [Mesembryanthemum crystallinum]

 Score =  576 bits (1485), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 283/338 (83%), Positives = 309/338 (91%), Gaps = 1/338 (0%)

Query: 1   MAIELSNLMERSLSMLS-SDHKSVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIG 59
           MA +LSNL+   L MLS SDH SVVSMNLFVALLC CIVIGHLLEENRWMNESITAL IG
Sbjct: 1   MAFDLSNLVSTKLQMLSTSDHASVVSMNLFVALLCGCIVIGHLLEENRWMNESITALAIG 60

Query: 60  LCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAV 119
           L TG+VILL + G SSH+L+FSEDLFFIYLLPPIIFNAGFQVKKKQFFRNF+TI++FGA+
Sbjct: 61  LATGVVILLFSGGKSSHLLVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFITIIVFGAL 120

Query: 120 GTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSL 179
           GTL+SF IIS GA+ FFK+++IG+L++GDYLAIGAIFAATDSVCTLQVL+QDETPLLYSL
Sbjct: 121 GTLVSFTIISLGAMEFFKKLDIGSLELGDYLAIGAIFAATDSVCTLQVLHQDETPLLYSL 180

Query: 180 VFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFI 239
           VFGEGVVNDATSVVLFNAIQ+FDL+HI+  IA KF G+F YLF  ST+LG I GLLSA+I
Sbjct: 181 VFGEGVVNDATSVVLFNAIQNFDLTHIDHRIAFKFAGNFLYLFFTSTLLGAITGLLSAYI 240

Query: 240 IKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSR 299
           IKKLY GRHSTDREVALM+LMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSR
Sbjct: 241 IKKLYFGRHSTDREVALMMLMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSR 300

Query: 300 VTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDS 337
           VTTKHAFATLSFVAE FIFLYVGMDALDIEKWR V DS
Sbjct: 301 VTTKHAFATLSFVAETFIFLYVGMDALDIEKWRFVSDS 338

Source: Mesembryanthemum crystallinum

Species: Mesembryanthemum crystallinum

Genus: Mesembryanthemum

Family: Aizoaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|33327263|gb|AAQ08988.1| Na/H antiporter Nhx1 [Tetragonia tetragonioides]

 Score =  575 bits (1482), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 283/338 (83%), Positives = 308/338 (91%), Gaps = 1/338 (0%)

Query: 1   MAIELSNLMERSLSML-SSDHKSVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIG 59
           MA +LS  +   L ML +SDH SVVSMNLFVALLC CIV+GHLLEENRWMNESITALIIG
Sbjct: 1   MAFDLSYFVSNKLGMLATSDHASVVSMNLFVALLCGCIVLGHLLEENRWMNESITALIIG 60

Query: 60  LCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAV 119
           L TG+VILL + G SSH+L+FSEDLFFIYLLPPIIFNAGFQVKKKQFFRNF+TI+LFGAV
Sbjct: 61  LGTGVVILLISGGKSSHLLVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFITIILFGAV 120

Query: 120 GTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSL 179
           GTLISF IIS GA+ FFK+++IG+L +GDYLAIGAIFAATDSVCTLQVLNQDETPLLYSL
Sbjct: 121 GTLISFTIISLGAMEFFKKLDIGSLDLGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSL 180

Query: 180 VFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFI 239
           VFGEGVVNDATSVVLFNAIQ+FDL+HI+  IAL+F G+F YLF  ST+LG + GLLSA+I
Sbjct: 181 VFGEGVVNDATSVVLFNAIQNFDLTHIDHRIALQFAGNFLYLFFTSTLLGAMTGLLSAYI 240

Query: 240 IKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSR 299
           IKKLY GRHSTDREVALM+LMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSR
Sbjct: 241 IKKLYFGRHSTDREVALMMLMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSR 300

Query: 300 VTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDS 337
           VTTKHAFATLSFVAE FIFLYVGMDALDIEKWR V DS
Sbjct: 301 VTTKHAFATLSFVAETFIFLYVGMDALDIEKWRFVSDS 338

Source: Tetragonia tetragonioides

Species: Tetragonia tetragonioides

Genus: Tetragonia

Family: Aizoaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	351
TAIR|locus:2081111	503	NHX4 "sodium hydrogen exchange	0.974	0.679	0.819	8.1e-147
TAIR|locus:2114810	546	NHX2 "sodium hydrogen exchange	0.945	0.608	0.810	2.6e-143
TAIR|locus:2181246	538	NHX1 "Na+/H+ exchanger 1" [Ara	0.948	0.618	0.789	4.9e-140
TAIR|locus:2173972	529	NHX3 "AT5G55470" [Arabidopsis	0.925	0.614	0.64	2.9e-112
UNIPROTKB|F1MWW1	585	LOC617800 "Sodium/hydrogen exc	0.843	0.505	0.353	1.3e-45
UNIPROTKB|E2R7C3	581	SLC9A8 "Sodium/hydrogen exchan	0.843	0.509	0.353	1.3e-45
MGI|MGI:1924281	576	Slc9a8 "solute carrier family	0.843	0.513	0.356	1.6e-45
RGD|1308193	575	Slc9a8 "solute carrier family	0.843	0.514	0.356	1.6e-45
UNIPROTKB|Q4L208	575	Slc9a8 "Sodium/hydrogen exchan	0.843	0.514	0.356	1.6e-45
UNIPROTKB|Q5ZJ75	574	Q5ZJ75 "Sodium/hydrogen exchan	0.843	0.515	0.353	2.1e-45

TAIR|locus:2081111 NHX4 "sodium hydrogen exchanger 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1434 (509.9 bits), Expect = 8.1e-147, P = 8.1e-147
 Identities = 281/343 (81%), Positives = 312/343 (90%)

Query:     1 MAIELSNLMERSLSMLSSDHKSVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGL 60
             M I LS ++E++ ++ +SDH SVVSMNLFVALLCACIV+GHLLEE RWMNESITALIIG 
Sbjct:     1 MVIGLSTMLEKTEALFASDHASVVSMNLFVALLCACIVLGHLLEETRWMNESITALIIGS 60

Query:    61 CTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVG 120
             CTGIVILL + G SS +L+FSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGA+G
Sbjct:    61 CTGIVILLISGGKSSRILVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAIG 120

Query:   121 TLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLV 180
             TLISFVIIS GA H F++MNIG L I DYLAIGAIF+ATDSVCTLQVLNQDETPLLYSLV
Sbjct:   121 TLISFVIISFGAKHLFEKMNIGDLTIADYLAIGAIFSATDSVCTLQVLNQDETPLLYSLV 180

Query:   181 FGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFII 240
             FGEGVVNDATSVVLFNAIQ FDL++IN +IAL+F G+FFYLFI ST LGV AGLLSAF+I
Sbjct:   181 FGEGVVNDATSVVLFNAIQRFDLTNINSAIALEFAGNFFYLFILSTALGVAAGLLSAFVI 240

Query:   241 KKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRV 300
             KKLY+GRHSTDREVALM+L+AYLSYMLAELF+LS ILTVFFCGIVMSHYTWHNVT+ S+V
Sbjct:   241 KKLYIGRHSTDREVALMMLLAYLSYMLAELFHLSSILTVFFCGIVMSHYTWHNVTDKSKV 300

Query:   301 TTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSLPVQAI 343
             TTKH FA +SF+AEIFIFLYVGMDALDIEKW VVR+S P Q+I
Sbjct:   301 TTKHTFAAMSFLAEIFIFLYVGMDALDIEKWDVVRNS-PGQSI 342

GO:0006812 "cation transport" evidence=IEA

GO:0006814 "sodium ion transport" evidence=IEA;ISS;RCA

GO:0006885 "regulation of pH" evidence=IEA

GO:0015081 "sodium ion transmembrane transporter activity" evidence=ISS

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IMP

GO:0010351 "lithium ion transport" evidence=RCA

TAIR|locus:2114810 NHX2 "sodium hydrogen exchanger 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1401 (498.2 bits), Expect = 2.6e-143, P = 2.6e-143
 Identities = 269/332 (81%), Positives = 303/332 (91%)

Query:     6 SNLMERSLSMLSSDHKSVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIV 65
             ++L  + LS+ +SDH SVVS+NLFVALLCACIVIGHLLEENRWMNESITAL+IGL TG+V
Sbjct:     5 ASLTSKMLSVSTSDHASVVSLNLFVALLCACIVIGHLLEENRWMNESITALLIGLGTGVV 64

Query:    66 ILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISF 125
             ILL + G +SH+L+FSEDLFFIYLLPPIIFNAGFQVKKKQFFRNF+TIM FGA+GT++S 
Sbjct:    65 ILLISRGKNSHLLVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFVTIMAFGAIGTVVSC 124

Query:   126 VIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGV 185
              IIS GA+ FFK+++IGT  +GD+LAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGV
Sbjct:   125 TIISLGAIQFFKKLDIGTFDLGDFLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGV 184

Query:   186 VNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYM 245
             VNDATSVVLFNAIQSFDL+H+N   A +F+G+FFYLF+ ST LGV  GL+SA++IKKLY 
Sbjct:   185 VNDATSVVLFNAIQSFDLTHLNHEAAFQFLGNFFYLFLLSTGLGVATGLISAYVIKKLYF 244

Query:   246 GRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHA 305
             GRHSTDREVALM+LMAYLSYMLAELF LSGILTVFFCGIVMSHYTWHNVTESSR+TTKHA
Sbjct:   245 GRHSTDREVALMMLMAYLSYMLAELFALSGILTVFFCGIVMSHYTWHNVTESSRITTKHA 304

Query:   306 FATLSFVAEIFIFLYVGMDALDIEKWRVVRDS 337
             FATLSF+AE FIFLYVGMDALDIEKWR V DS
Sbjct:   305 FATLSFLAETFIFLYVGMDALDIEKWRFVSDS 336

GO:0005576 "extracellular region" evidence=ISM

GO:0006814 "sodium ion transport" evidence=ISS;RCA

GO:0015081 "sodium ion transmembrane transporter activity" evidence=ISS

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS;IDA

GO:0010107 "potassium ion import" evidence=IDA

GO:0015386 "potassium:hydrogen antiporter activity" evidence=IDA

GO:0015992 "proton transport" evidence=IDA

GO:0055075 "potassium ion homeostasis" evidence=IGI

GO:0090333 "regulation of stomatal closure" evidence=IGI

GO:0010351 "lithium ion transport" evidence=RCA

TAIR|locus:2181246 NHX1 "Na+/H+ exchanger 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1370 (487.3 bits), Expect = 4.9e-140, P = 4.9e-140
 Identities = 263/333 (78%), Positives = 297/333 (89%)

Query:     5 LSNLMERSLSMLSSDHKSVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGI 64
             L +L+ +  S+ +SDH SVV++NLFVALLCACIV+GHLLEENRWMNESITAL+IGL TG+
Sbjct:     2 LDSLVSKLPSLSTSDHASVVALNLFVALLCACIVLGHLLEENRWMNESITALLIGLGTGV 61

Query:    65 VILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLIS 124
              ILL + G SSH+L+FSEDLFFIYLLPPIIFNAGFQVKKKQFFRNF+TIMLFGAVGT+IS
Sbjct:    62 TILLISKGKSSHLLVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFVTIMLFGAVGTIIS 121

Query:   125 FVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEG 184
               IIS G   FFK+++IGT  +GDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEG
Sbjct:   122 CTIISLGVTQFFKKLDIGTFDLGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEG 181

Query:   185 VVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLY 244
             VVNDATSVV+FNAIQSFDL+H+N   A   +G+F YLF+ ST+LG   GL+SA++IKKLY
Sbjct:   182 VVNDATSVVVFNAIQSFDLTHLNHEAAFHLLGNFLYLFLLSTLLGAATGLISAYVIKKLY 241

Query:   245 MGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKH 304
              GRHSTDREVALM+LMAYLSYMLAELF LSGILTVFFCGIVMSHYTWHNVTESSR+TTKH
Sbjct:   242 FGRHSTDREVALMMLMAYLSYMLAELFDLSGILTVFFCGIVMSHYTWHNVTESSRITTKH 301

Query:   305 AFATLSFVAEIFIFLYVGMDALDIEKWRVVRDS 337
              FATLSF+AE FIFLYVGMDALDI+KWR V D+
Sbjct:   302 TFATLSFLAETFIFLYVGMDALDIDKWRSVSDT 334

GO:0005576 "extracellular region" evidence=ISM

GO:0015081 "sodium ion transmembrane transporter activity" evidence=IGI;ISS

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=IEA;IGI;ISS;IDA;TAS

GO:0035725 "sodium ion transmembrane transport" evidence=IGI;ISS;IDA;TAS

GO:0000325 "plant-type vacuole" evidence=TAS

GO:0009651 "response to salt stress" evidence=IMP;TAS

GO:0005774 "vacuolar membrane" evidence=TAS

GO:0006814 "sodium ion transport" evidence=IGI;IC;RCA

GO:0005886 "plasma membrane" evidence=IDA

GO:0048366 "leaf development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0055075 "potassium ion homeostasis" evidence=IGI

GO:0090333 "regulation of stomatal closure" evidence=IGI

GO:0006869 "lipid transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=IGI;RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2173972 NHX3 "AT5G55470" [Arabidopsis thaliana (taxid:3702)]

 Score = 1108 (395.1 bits), Expect = 2.9e-112, P = 2.9e-112
 Identities = 208/325 (64%), Positives = 260/325 (80%)

Query:     8 LMERSLSMLSSDHKSVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVIL 67
             L E   + L+++H  V+ +++F+A+LC C+VIGHLLEENRW+NESITA+++G  +G VIL
Sbjct:     5 LTEFVTNKLAAEHPQVIPISVFIAILCLCLVIGHLLEENRWVNESITAILVGAASGTVIL 64

Query:    68 LTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVI 127
             L + G SSH+L+F E+LFFIYLLPPIIFNAGFQVKKK+FF NF+TIM FG +G  IS VI
Sbjct:    65 LISKGKSSHILVFDEELFFIYLLPPIIFNAGFQVKKKKFFHNFLTIMSFGVIGVFISTVI 124

Query:   128 ISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVN 187
             IS G    F ++    L   DYLAIG IF++TD+VCTLQ+L+QDETPLLYSLVFGEGVVN
Sbjct:   125 ISFGTWWLFPKLGFKGLSARDYLAIGTIFSSTDTVCTLQILHQDETPLLYSLVFGEGVVN 184

Query:   188 DATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGR 247
             DATSVVLFNA+Q      +    AL+  G+F YLF  ST+LG+  GL+++F++K LY GR
Sbjct:   185 DATSVVLFNAVQKIQFESLTGWTALQVFGNFLYLFSTSTLLGIGVGLITSFVLKTLYFGR 244

Query:   248 HSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFA 307
             HST RE+A+M+LMAYLSYMLAELF LSGILTVFFCG++MSHY  +NVTESSR+T++H FA
Sbjct:   245 HSTTRELAIMVLMAYLSYMLAELFSLSGILTVFFCGVLMSHYASYNVTESSRITSRHVFA 304

Query:   308 TLSFVAEIFIFLYVGMDALDIEKWR 332
              LSF+AE FIFLYVG DALD  KW+
Sbjct:   305 MLSFIAETFIFLYVGTDALDFTKWK 329

GO:0006814 "sodium ion transport" evidence=ISS;RCA

GO:0015081 "sodium ion transmembrane transporter activity" evidence=ISS

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=IEA;ISS;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0055075 "potassium ion homeostasis" evidence=IMP

GO:0010351 "lithium ion transport" evidence=RCA

UNIPROTKB|F1MWW1 LOC617800 "Sodium/hydrogen exchanger" [Bos taurus (taxid:9913)]

 Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
 Identities = 110/311 (35%), Positives = 179/311 (57%)

Query:    26 MNLFVALL--CACIVIGHLLEENR--WMNESITALIIGLCTGIVI-LLTTNGTSS--HVL 78
             M +F +LL    CI++ HLL   R  ++ ES+  + +G+  G VI ++     ++     
Sbjct:    63 MTIFFSLLVLAICIILVHLLIRYRLHFLPESVAVVSLGILMGAVIKIIEFKKLANWKEEE 122

Query:    79 MFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQ 138
             MF  ++FF+ LLPPIIF +G+ + K  FF+N  +I LF   GT IS  ++  G ++F  Q
Sbjct:   123 MFRPNMFFLLLLPPIIFESGYSLHKGNFFQNIGSITLFAVFGTAISAFVVGGG-IYFLGQ 181

Query:   139 MN-IGTLKIGDYLAIGAIFAATDSVCTLQVLNQDET-PLLYSLVFGEGVVNDATSVVLFN 196
              + I  L + D  A G++ +A D V T+ + N     P+L  LVFGE ++NDA S+VL N
Sbjct:   182 ADVISKLNMTDSFAFGSLISAVDPVATIAIFNALHVDPVLNMLVFGESILNDAVSIVLTN 241

Query:   197 AIQSF---DLSHIN-LSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDR 252
               +     ++S ++     L+ +G F  +F  S  LG + GL+SA ++K + + R +   
Sbjct:   242 TAEGLTRKNMSDVSGWQTFLQALGYFLKMFFGSAALGTLTGLISALVLKHIDL-RKTPSL 300

Query:   253 EVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFV 312
             E  +MI+ AYL Y LAE   LSGI+ + F GIVMSHYT HN++  +++  +    T++F+
Sbjct:   301 EFGMMIIFAYLPYGLAEGISLSGIMAILFSGIVMSHYTHHNLSPVTQILMQQTLRTVAFL 360

Query:   313 AEIFIFLYVGM 323
              E  +F ++G+
Sbjct:   361 CETCVFAFLGL 371

GO:0051453 "regulation of intracellular pH" evidence=IEA

GO:0015386 "potassium:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2R7C3 SLC9A8 "Sodium/hydrogen exchanger" [Canis lupus familiaris (taxid:9615)]

 Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
 Identities = 110/311 (35%), Positives = 179/311 (57%)

Query:    26 MNLFVALL--CACIVIGHLLEENR--WMNESITALIIGLCTGIVI-LLTTNGTSS--HVL 78
             M +F +LL    CI++ HLL   R  ++ ES+  + +G+  G VI ++     ++     
Sbjct:    60 MTIFFSLLVLAICIILVHLLIRYRLHFLPESVAVVSLGILMGAVIKIIEFKKLANWKEEE 119

Query:    79 MFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQ 138
             MF  ++FF+ LLPPIIF +G+ + K  FF+N  +I LF   GT IS  ++  G ++F  Q
Sbjct:   120 MFRPNMFFLLLLPPIIFESGYSLHKGNFFQNIGSITLFAVFGTAISAFVVGGG-IYFLGQ 178

Query:   139 MN-IGTLKIGDYLAIGAIFAATDSVCTLQVLNQDET-PLLYSLVFGEGVVNDATSVVLFN 196
              + I  L + D  A G++ +A D V T+ + N     P+L  LVFGE ++NDA S+VL N
Sbjct:   179 ADVISKLNMTDSFAFGSLISAVDPVATIAIFNALHVDPVLNMLVFGESILNDAVSIVLTN 238

Query:   197 AIQSF---DLSHIN-LSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDR 252
               +     ++S ++     L+ +G F  +F  S  LG + GL+SA ++K + + R +   
Sbjct:   239 TAEGLTRKNMSDVSGWQTFLQALGYFLKMFFGSAALGTLTGLISALVLKHIDL-RKTPSL 297

Query:   253 EVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFV 312
             E  +MI+ AYL Y LAE   LSGI+ + F GIVMSHYT HN++  +++  +    T++F+
Sbjct:   298 EFGMMIIFAYLPYGLAEGISLSGIMAILFSGIVMSHYTHHNLSPVTQILMQQTLRTVAFL 357

Query:   313 AEIFIFLYVGM 323
              E  +F ++G+
Sbjct:   358 CETCVFAFLGL 368

GO:0051453 "regulation of intracellular pH" evidence=IEA

GO:0015386 "potassium:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1924281 Slc9a8 "solute carrier family 9 (sodium/hydrogen exchanger), member 8" [Mus musculus (taxid:10090)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 111/311 (35%), Positives = 178/311 (57%)

Query:    26 MNLFVALL--CACIVIGHLLEENR--WMNESITALIIGLCTGIVI-LLTTNGTSS--HVL 78
             M +F +LL    CI++ HLL   R  ++ ES+  + +G+  G VI ++     ++     
Sbjct:    55 MTIFFSLLVLAICIILVHLLIRYRLHFLPESVAVVSLGILMGAVIKVIEFKKLANWKEEE 114

Query:    79 MFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQ 138
             MF  ++FF+ LLPPIIF +G+ + K  FF+N  +I LF   GT IS  ++  G ++F  Q
Sbjct:   115 MFRPNMFFLLLLPPIIFESGYSLHKGNFFQNIGSITLFAVFGTAISAFVVGGG-IYFLGQ 173

Query:   139 MN-IGTLKIGDYLAIGAIFAATDSVCTLQVLNQDET-PLLYSLVFGEGVVNDATSVVLFN 196
              + I  L + D  A G++ +A D V T+ + N     P+L  LVFGE ++NDA S+VL N
Sbjct:   174 ADVISKLNMTDSFAFGSLISAVDPVATIAIFNALHVDPVLNMLVFGESILNDAVSIVLTN 233

Query:   197 AIQSFDLSHIN-LSIALKF---VGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDR 252
               +     H++ +S    F   +G F  +F  S  LG + GL+SA ++K + + R +   
Sbjct:   234 TAEGLTRKHMSDVSGWQTFSQALGYFLKMFFGSAALGTLTGLISALVLKHIDL-RKTPSL 292

Query:   253 EVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFV 312
             E  +MI+ AYL Y LAE   LSGI+ + F GIVMSHYT HN++  +++  +    T++F+
Sbjct:   293 EFGMMIIFAYLPYGLAEGISLSGIMAILFSGIVMSHYTHHNLSPVTQILMQQTLRTVAFL 352

Query:   313 AEIFIFLYVGM 323
              E  +F ++G+
Sbjct:   353 CETCVFAFLGL 363

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006812 "cation transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IDA

GO:0006814 "sodium ion transport" evidence=IDA

GO:0006885 "regulation of pH" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=IDA

GO:0015386 "potassium:hydrogen antiporter activity" evidence=IDA

GO:0015992 "proton transport" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=IDA

GO:0051453 "regulation of intracellular pH" evidence=IDA

GO:0055085 "transmembrane transport" evidence=IEA

RGD|1308193 Slc9a8 "solute carrier family 9, subfamily A (NHE8, cation proton antiporter 8), member 8" [Rattus norvegicus (taxid:10116)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 111/311 (35%), Positives = 178/311 (57%)

Query:    26 MNLFVALL--CACIVIGHLLEENR--WMNESITALIIGLCTGIVI-LLTTNGTSS--HVL 78
             M +F +LL    CI++ HLL   R  ++ ES+  + +G+  G VI ++     ++     
Sbjct:    54 MTIFFSLLVLAICIILVHLLIRYRLHFLPESVAVVSLGILMGAVIKVIEFKKLANWKEEE 113

Query:    79 MFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQ 138
             MF  ++FF+ LLPPIIF +G+ + K  FF+N  +I LF   GT IS  ++  G ++F  Q
Sbjct:   114 MFRPNMFFLLLLPPIIFESGYSLHKGNFFQNIGSITLFAVFGTAISAFVVGGG-IYFLGQ 172

Query:   139 MN-IGTLKIGDYLAIGAIFAATDSVCTLQVLNQDET-PLLYSLVFGEGVVNDATSVVLFN 196
              + I  L + D  A G++ +A D V T+ + N     P+L  LVFGE ++NDA S+VL N
Sbjct:   173 ADVISKLNMTDSFAFGSLISAVDPVATIAIFNALHVDPVLNMLVFGESILNDAVSIVLTN 232

Query:   197 AIQSFDLSHIN-LSIALKF---VGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDR 252
               +     H++ +S    F   +G F  +F  S  LG + GL+SA ++K + + R +   
Sbjct:   233 TAEGLTRKHMSDVSGWQTFSQALGYFLKMFFGSAALGTLTGLISALVLKHIDL-RKTPSL 291

Query:   253 EVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFV 312
             E  +MI+ AYL Y LAE   LSGI+ + F GIVMSHYT HN++  +++  +    T++F+
Sbjct:   292 EFGMMIIFAYLPYGLAEGISLSGIMAILFSGIVMSHYTHHNLSPVTQILMQQTLRTVAFL 351

Query:   313 AEIFIFLYVGM 323
              E  +F ++G+
Sbjct:   352 CETCVFAFLGL 362

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA;ISO

GO:0006813 "potassium ion transport" evidence=ISO

GO:0006814 "sodium ion transport" evidence=ISO

GO:0006885 "regulation of pH" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=IEA;ISO

GO:0015386 "potassium:hydrogen antiporter activity" evidence=IEA;ISO

GO:0015992 "proton transport" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISO

GO:0051453 "regulation of intracellular pH" evidence=IEA;ISO

UNIPROTKB|Q4L208 Slc9a8 "Sodium/hydrogen exchanger 8" [Rattus norvegicus (taxid:10116)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 111/311 (35%), Positives = 178/311 (57%)

Query:    26 MNLFVALL--CACIVIGHLLEENR--WMNESITALIIGLCTGIVI-LLTTNGTSS--HVL 78
             M +F +LL    CI++ HLL   R  ++ ES+  + +G+  G VI ++     ++     
Sbjct:    54 MTIFFSLLVLAICIILVHLLIRYRLHFLPESVAVVSLGILMGAVIKVIEFKKLANWKEEE 113

Query:    79 MFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQ 138
             MF  ++FF+ LLPPIIF +G+ + K  FF+N  +I LF   GT IS  ++  G ++F  Q
Sbjct:   114 MFRPNMFFLLLLPPIIFESGYSLHKGNFFQNIGSITLFAVFGTAISAFVVGGG-IYFLGQ 172

Query:   139 MN-IGTLKIGDYLAIGAIFAATDSVCTLQVLNQDET-PLLYSLVFGEGVVNDATSVVLFN 196
              + I  L + D  A G++ +A D V T+ + N     P+L  LVFGE ++NDA S+VL N
Sbjct:   173 ADVISKLNMTDSFAFGSLISAVDPVATIAIFNALHVDPVLNMLVFGESILNDAVSIVLTN 232

Query:   197 AIQSFDLSHIN-LSIALKF---VGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDR 252
               +     H++ +S    F   +G F  +F  S  LG + GL+SA ++K + + R +   
Sbjct:   233 TAEGLTRKHMSDVSGWQTFSQALGYFLKMFFGSAALGTLTGLISALVLKHIDL-RKTPSL 291

Query:   253 EVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFV 312
             E  +MI+ AYL Y LAE   LSGI+ + F GIVMSHYT HN++  +++  +    T++F+
Sbjct:   292 EFGMMIIFAYLPYGLAEGISLSGIMAILFSGIVMSHYTHHNLSPVTQILMQQTLRTVAFL 351

Query:   313 AEIFIFLYVGM 323
              E  +F ++G+
Sbjct:   352 CETCVFAFLGL 362

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q5ZJ75 Q5ZJ75 "Sodium/hydrogen exchanger 8" [Gallus gallus (taxid:9031)]

 Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
 Identities = 110/311 (35%), Positives = 180/311 (57%)

Query:    26 MNLFVALL--CACIVIGHLLEENR--WMNESITALIIGLCTGIVI-LLTTNGTSS--HVL 78
             M +F +LL    CI++ HLL + R  ++ ES+  + +G+  G  I ++     ++     
Sbjct:    53 MTIFFSLLVLAICIILVHLLIKYRLHFLPESVAVVSLGIIMGAFIKIIEAQKLANWKEEE 112

Query:    79 MFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQ 138
             MF  ++FF+ LLPPIIF +G+ + K  FF+N  +I LF   GT IS  I+  G ++F  Q
Sbjct:   113 MFRPNMFFLLLLPPIIFESGYSLHKGNFFQNIGSITLFSVFGTAISAFIVGGG-IYFLGQ 171

Query:   139 MN-IGTLKIGDYLAIGAIFAATDSVCTLQVLNQ-DETPLLYSLVFGEGVVNDATSVVLFN 196
              + I  L + D  A G++ +A D V T+ + N  +  P+L  LVFGE ++NDA S+VL N
Sbjct:   172 ADVIYKLNMTDSFAFGSLISAVDPVATIAIFNALNVDPVLNMLVFGESILNDAVSIVLTN 231

Query:   197 AIQSF---DLSHIN-LSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDR 252
               +     ++S ++     L+ +G F  +F  S  LG + GL+SA ++K + + R +   
Sbjct:   232 TAEGLTRENMSDVSGWQTFLQALGYFLKMFFGSAALGTLTGLISALVLKHIDL-RKTPSL 290

Query:   253 EVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFV 312
             E  +MI+ AYL Y LAE   LSGI+ + F GIVMSHYT HN++  +++  +    T++F+
Sbjct:   291 EFGMMIIFAYLPYGLAEGISLSGIMAILFSGIVMSHYTHHNLSPVTQILMQQTLRTVAFM 350

Query:   313 AEIFIFLYVGM 323
              E  +F ++G+
Sbjct:   351 CETCVFAFLGL 361

GO:0006885 "regulation of pH" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q84WG1	NHX3_ARATH	No assigned EC number	0.8192	0.9743	0.6799	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	351
TIGR00840	559	TIGR00840, b_cpa1, sodium/hydrogen exchanger 3	3e-49
COG0025	429	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiport	1e-28
pfam00999	370	pfam00999, Na_H_Exchanger, Sodium/hydrogen exchang	7e-25
TIGR00831	525	TIGR00831, a_cpa1, Na+/H+ antiporter, bacterial fo	9e-16
COG3263	574	COG3263, COG3263, NhaP-type Na+/H+ and K+/H+ antip	9e-05
TIGR00932	273	TIGR00932, 2a37, transporter, monovalent cation:pr	8e-04
PRK05326	562	PRK05326, PRK05326, potassium/proton antiporter; R	0.001

>gnl|CDD|233147 TIGR00840, b_cpa1, sodium/hydrogen exchanger 3

 Score =  173 bits (439), Expect = 3e-49
 Identities = 89/287 (31%), Positives = 146/287 (50%), Gaps = 12/287 (4%)

Query: 47  RWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQF 106
           R + ES+  ++ GL  G +I  + +             FF+YLLPPI+ +AG+ + ++ F
Sbjct: 33  RAVPESVLLIVYGLLVGGIIKASPHIDP---PTLDSSYFFLYLLPPIVLDAGYFMPQRNF 89

Query: 107 FRNFMTIMLFGAVGTLISFVIISAG--AVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCT 164
           F N  +I++F  VGTLI+  +I      +          + + D L  G++ +A D V  
Sbjct: 90  FENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVAV 149

Query: 165 LQVLNQ-DETPLLYSLVFGEGVVNDATSVVLFNAIQSF---DLSHINLSIALKFVGSFFY 220
           L V  +      LY ++FGE ++NDA +VVL+N    F       + +    +   SFF 
Sbjct: 150 LAVFEEYHVNEKLYIIIFGESLLNDAVTVVLYNTFIKFHKTADEPVTIVDVFEGCASFFV 209

Query: 221 LFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVF 280
           +     ++GV+ G L AFI +      H    E   + L++YLSY+ AE  +LSGIL + 
Sbjct: 210 VTCGGLLVGVVFGFLVAFITRFT---HHIRQIEPLFVFLISYLSYLFAETLHLSGILALI 266

Query: 281 FCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALD 327
           FCGI M  Y   N++  S+ T K+    LS ++E  IF+++G+  + 
Sbjct: 267 FCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVT 313

The Monovalent Cation:Proton Antiporter-1 (CPA1) Family (TC 2.A.36)The CPA1 family is a large family of proteins derived from Gram-positive and Gram-negative bacteria, blue green bacteria, yeast, plants and animals.Transporters from eukaryotes have been functionally characterized, and all of these catalyze Na+:H+ exchange. Their primary physiological functions may be in(1) cytoplasmic pH regulation, extruding the H+ generated during metabolism, and (2) salt tolerance (in plants), due to Na+ uptake into vacuoles.This model is specific for the eukaryotic members members of this family [Transport and binding proteins, Cations and iron carrying compounds]. Length = 559

>gnl|CDD|223104 COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]

 Score =  114 bits (288), Expect = 1e-28
 Identities = 60/283 (21%), Positives = 121/283 (42%), Gaps = 9/283 (3%)

Query: 52  SITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFM 111
            +  + + L  G++         S  L    +LF +  L  ++F  G ++  ++  R + 
Sbjct: 29  LLPEIPLLLLLGLLGGPPGLNLISPDLELDPELFLVLFLAILLFAGGLELDLRELRRVWR 88

Query: 112 TIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQD 171
           +I++      LI+ + I     H+     +  + +     +GAI + TD V    +  + 
Sbjct: 89  SILVLALPLVLITALGI-GLLAHWL----LPGIPLAAAFLLGAILSPTDPVAVSPIFKRV 143

Query: 172 ETPL-LYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGV 230
             P  + +++ GE ++ND   +VLF    +  L     S+    +  F    +   +LG+
Sbjct: 144 RVPKRIRTILEGESLLNDGVGIVLFKVALAALLGTGAFSLGW-ALLLFLIEALGGILLGL 202

Query: 231 IAGLLSAFIIKKLY-MGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHY 289
           + G L   ++++L   G  S   E  L +L+A+ +Y+LAE   +SGIL V   G+V+   
Sbjct: 203 LLGYLLGRLLRRLDRRGWTSPLLETLLTLLLAFAAYLLAEALGVSGILAVVVAGLVLGEA 262

Query: 290 T-WHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKW 331
              +    S+R+     +  L F+    +F+ +G         
Sbjct: 263 VRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLL 305

Length = 429

>gnl|CDD|216235 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family

 Score =  103 bits (259), Expect = 7e-25
 Identities = 64/243 (26%), Positives = 109/243 (44%), Gaps = 17/243 (6%)

Query: 83  DLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIG 142
           ++     LP ++F AG ++  ++  +N  +I+L   +G LI F++     +     + I 
Sbjct: 48  EVLAELGLPLLLFLAGLELDLRELRKNGKSILLLALLGVLIPFLL--GLLLALLGGLGIP 105

Query: 143 TLKIGDYLAIGAIFAATDSVCTLQVL--NQDETPLLYSLVFGEGVVNDATSVVLFNAIQS 200
              + + L  GA  +AT  V  L +L         L +L+ GE V+NDA +VVL   + +
Sbjct: 106 ---LLEALLFGAALSATSPVVVLAILKERGRLNTRLGTLILGESVLNDAVAVVLLAVLLA 162

Query: 201 FDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILM 260
                  LS     +  F  + +   +LG++ G L   I +     R     EV L++ +
Sbjct: 163 L-AGVGGLSDLGLLLLIFLVVALGGLLLGLVFGWLLRLITRFTSGDREL---EVLLVLAL 218

Query: 261 AYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLY 320
           A L+ +LAEL  LSGIL  F  G+V+S+Y + N                  +     F+ 
Sbjct: 219 ALLAALLAELLGLSGILGAFLAGLVLSNYAFANELSEK------LEPFGYGLFLPLFFVS 272

Query: 321 VGM 323
           VG+
Sbjct: 273 VGL 275

Na/H antiporters are key transporters in maintaining the pH of actively metabolising cells. The molecular mechanisms of antiport are unclear. These antiporters contain 10-12 transmembrane regions (M) at the amino-terminus and a large cytoplasmic region at the carboxyl terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. Length = 370

>gnl|CDD|129911 TIGR00831, a_cpa1, Na+/H+ antiporter, bacterial form

 Score = 78.0 bits (192), Expect = 9e-16
 Identities = 58/250 (23%), Positives = 111/250 (44%), Gaps = 20/250 (8%)

Query: 80  FSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQM 139
              ++     LPP++F A      ++   NF  I L          V+++   V F    
Sbjct: 46  LDREIVLFLFLPPLLFEAAMNTDLRELRENFRPIALIA-----FLLVVVTTVVVGFSLNW 100

Query: 140 NIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPL-LYSLVFGEGVVNDATSVVLFNAI 198
            +G + +   L +GA+ + TD+V  L        P  L  L+ GE ++ND  ++V+F   
Sbjct: 101 ILG-IPLALALILGAVLSPTDAVAVLGTFKSIRAPKKLSILLEGESLLNDGAALVVF--- 156

Query: 199 QSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGR-HSTDREVALM 257
            +  ++ + L   +    +    F    + G+ AGL   ++  +L   +      E+AL 
Sbjct: 157 -AIAVA-VALGKGVFDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAKIDDPLVEIALT 214

Query: 258 ILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTK---HAF-ATLSFVA 313
           IL  +  ++LAE F+ SG++ V   G+++++Y       S   TT+     F + + F+ 
Sbjct: 215 ILAPFAGFLLAERFHFSGVIAVVAAGLILTNY---GRDFSMSPTTRLIALDFWSVIVFLV 271

Query: 314 EIFIFLYVGM 323
              IF+ +G+
Sbjct: 272 NGIIFILIGV 281

The Monovalent Cation:Proton Antiporter-1 (CPA1) Family (TC 2.A.36) The CPA1 family is a large family of proteins derived from Gram-positive and Gram-negative bacteria, blue green bacteria, yeast, plants and animals. Transporters from eukaryotes have been functionally characterized, and all of these catalyze Na+:H+ exchange. Their primary physiological functions may be in (1) cytoplasmic pH regulation, extruding the H+ generated during metabolism, and (2) salt tolerance (in plants), due to Na+ uptake into vacuoles. This model is specific for the bacterial members of this family [Transport and binding proteins, Cations and iron carrying compounds]. Length = 525

>gnl|CDD|225802 COG3263, COG3263, NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]

 Score = 43.9 bits (104), Expect = 9e-05
 Identities = 51/237 (21%), Positives = 98/237 (41%), Gaps = 26/237 (10%)

Query: 93  IIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAI 152
           I+F+ GF  +   F       +    +G LI+  +    A +         L   + L I
Sbjct: 71  ILFDGGFGTQLSSFRVAAGPALSLATLGVLITSGLTGVAAAYLLN------LDWLEGLLI 124

Query: 153 GAIFAATDSVCTLQVLN-QDETPLLYSLVFGEGVVNDATSVVL---FNAIQSFDLSHINL 208
           GAI  +TD+     +L  ++    + S +  E   ND  +V L      + +   ++++ 
Sbjct: 125 GAIVGSTDAAAVFSLLGGKNLNERVASTLEIESGSNDPMAVFLTITLIELIAGGETNLSW 184

Query: 209 SIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAY--LSYM 266
              L F+  F        +LG+  G L   +I ++     + D  +  ++ +A   L + 
Sbjct: 185 GFLLGFLQQFG----LGLLLGLGGGKLLLQLINRI-----NLDSGLYPILALAGGLLIFS 235

Query: 267 LAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGM 323
           L      SGIL V+  G+++      N    +R      F  L+++A+I +FL +G+
Sbjct: 236 LTGAIGGSGILAVYLAGLLLG-----NRPIRARHGILRFFDGLAWLAQILMFLVLGL 287

Length = 574

>gnl|CDD|233195 TIGR00932, 2a37, transporter, monovalent cation:proton antiporter-2 (CPA2) family

 Score = 40.3 bits (95), Expect = 8e-04
 Identities = 46/219 (21%), Positives = 76/219 (34%), Gaps = 22/219 (10%)

Query: 74  SSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAV 133
              V   +E    I L+    F  G ++  ++ ++        G +  L+  V++     
Sbjct: 40  VEGVNHLAE-FGVILLM----FLIGLELDLERLWKLRKAAFGVGVLQVLVPGVLLGLLLG 94

Query: 134 HFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLN--QDETPLLYSLVFGEGVVNDATS 191
           H         L +G  + IG I A + +   +QVL             V G  +  D   
Sbjct: 95  HLL------GLALGAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQDIAV 148

Query: 192 VVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHS-- 249
           V L   +     S     +AL  +    +L     +L      L   +++     R S  
Sbjct: 149 VPLLALLPLLATSASTEHVALALLLLKVFLAFLLLVLLGR--WLLRPVLRLTAELRPSEL 206

Query: 250 -TDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMS 287
            T   + LM   AY     A+L  LS  L  F  G+V+S
Sbjct: 207 FTAGSLLLMFGSAYF----ADLLGLSMALGAFLAGVVLS 241

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 273

>gnl|CDD|235410 PRK05326, PRK05326, potassium/proton antiporter; Reviewed

 Score = 40.2 bits (95), Expect = 0.001
 Identities = 22/107 (20%), Positives = 42/107 (39%), Gaps = 17/107 (15%)

Query: 187 NDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKK---- 242
           ND  +V L   +    ++     ++  F+  F   F    ++G++ G L   ++ +    
Sbjct: 161 NDPMAVFLTITLIEL-ITGGETGLSWGFLLLFLQQFGLGALIGLLGGWLLVQLLNRIALP 219

Query: 243 ---LYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVM 286
              LY           L++  A L + L      SG L V+  G+V+
Sbjct: 220 AEGLYP---------ILVLAGALLIFALTAALGGSGFLAVYLAGLVL 257

Length = 562

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	351
KOG1965	575	consensus Sodium/hydrogen exchanger protein [Inorg	100.0
TIGR00840	559	b_cpa1 sodium/hydrogen exchanger 3. This model is	100.0
TIGR00831	525	a_cpa1 Na+/H+ antiporter, bacterial form. This mod	100.0
COG0025	429	NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg	100.0
TIGR00844	810	c_cpa1 na(+)/h(+) antiporter. This model is specif	100.0
PRK05326	562	potassium/proton antiporter; Reviewed	100.0
KOG1966	670	consensus Sodium/hydrogen exchanger protein [Inorg	100.0
COG3263	574	NhaP-type Na+/H+ and K+/H+ antiporters with a uniq	100.0
TIGR00932	273	2a37 transporter, monovalent cation:proton antipor	99.97
PF00999	380	Na_H_Exchanger: Sodium/hydrogen exchanger family;	99.95
KOG4505	467	consensus Na+/H+ antiporter [Inorganic ion transpo	99.95
COG0475	397	KefB Kef-type K+ transport systems, membrane compo	99.94
PRK03562	621	glutathione-regulated potassium-efflux system prot	99.93
PRK03659	601	glutathione-regulated potassium-efflux system prot	99.92
PLN03159	832	cation/H(+) antiporter 15; Provisional	99.91
PRK10669	558	putative cation:proton antiport protein; Provision	99.91
COG4651	408	RosB Kef-type K+ transport system, predicted NAD-b	99.64
KOG1650	769	consensus Predicted K+/H+-antiporter [Inorganic io	99.21
PRK14853	423	nhaA pH-dependent sodium/proton antiporter; Provis	98.6
TIGR00773	373	NhaA Na+/H+ antiporter NhaA. These proteins are me	97.65
PF13593	313	DUF4137: SBF-like CPA transporter family (DUF4137)	97.15
PF03601	305	Cons_hypoth698: Conserved hypothetical protein 698	96.61
PF06965	378	Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IP	96.41
PRK09560	389	nhaA pH-dependent sodium/proton antiporter; Review	96.33
COG2855	334	Predicted membrane protein [Function unknown]	96.02
COG0786	404	GltS Na+/glutamate symporter [Amino acid transport	95.94
PF03616	368	Glt_symporter: Sodium/glutamate symporter; InterPr	95.94
PRK03659	601	glutathione-regulated potassium-efflux system prot	95.73
TIGR00698	335	conserved hypothetical integral membrane protein.	95.73
PF06826	169	Asp-Al_Ex: Predicted Permease Membrane Region; Int	95.72
PF01758	187	SBF: Sodium Bile acid symporter family; InterPro:	95.71
COG0385	319	Predicted Na+-dependent transporter [General funct	95.71
PRK03562	621	glutathione-regulated potassium-efflux system prot	95.49
PRK10669	558	putative cation:proton antiport protein; Provision	95.21
PRK14854	383	nhaA pH-dependent sodium/proton antiporter; Provis	95.09
PRK14856	438	nhaA pH-dependent sodium/proton antiporter; Provis	95.06
COG2431	297	Predicted membrane protein [Function unknown]	94.73
PLN03159	832	cation/H(+) antiporter 15; Provisional	94.59
PRK14855	423	nhaA pH-dependent sodium/proton antiporter; Provis	94.43
PF03956	191	DUF340: Membrane protein of unknown function (DUF3	94.32
COG0475	397	KefB Kef-type K+ transport systems, membrane compo	94.15
PRK09561	388	nhaA pH-dependent sodium/proton antiporter; Review	94.06
COG1346	230	LrgB Putative effector of murein hydrolase [Cell e	93.77
TIGR03082	156	Gneg_AbrB_dup membrane protein AbrB duplication. T	93.61
PF05145	318	AmoA: Putative ammonia monooxygenase; InterPro: IP	93.29
TIGR00210	398	gltS sodium--glutamate symport carrier (gltS).	92.99
TIGR00210	398	gltS sodium--glutamate symport carrier (gltS).	92.84
PF05982	327	DUF897: Domain of unknown function (DUF897) ; Inte	92.41
TIGR03802	562	Asp_Ala_antiprt aspartate-alanine antiporter. All	92.06
PRK04288	232	antiholin-like protein LrgB; Provisional	91.86
PRK04972	558	putative transporter; Provisional	91.61
TIGR00841	286	bass bile acid transporter. Functionally character	91.0
PRK03818	552	putative transporter; Validated	90.95
TIGR00808	254	malonate_madM malonate transporter, MadM subunit.	90.32
TIGR00832	328	acr3 arsenical-resistance protein. The first prote	88.92
PF03390	414	2HCT: 2-hydroxycarboxylate transporter family; Int	88.83
COG3180	352	AbrB Putative ammonia monooxygenase [General funct	88.43
TIGR03802	562	Asp_Ala_antiprt aspartate-alanine antiporter. All	88.03
TIGR00659	226	conserved hypothetical protein TIGR00659. Members	87.84
PF03812	314	KdgT: 2-keto-3-deoxygluconate permease; InterPro:	87.45
PF03616	368	Glt_symporter: Sodium/glutamate symporter; InterPr	86.99
PRK04125	141	murein hydrolase regulator LrgA; Provisional	86.98
COG3004	390	NhaA Na+/H+ antiporter [Inorganic ion transport an	86.41
TIGR01625	154	YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplicati	85.98
PRK04972	558	putative transporter; Provisional	85.77
KOG3826	252	consensus Na+/H+ antiporter [Inorganic ion transpo	84.92
PRK01658	122	holin-like protein; Validated	84.16
PRK12460	312	2-keto-3-deoxygluconate permease; Provisional	83.86
COG2985	544	Predicted permease [General function prediction on	83.6
PRK05326	562	potassium/proton antiporter; Reviewed	82.72
PF05684	378	DUF819: Protein of unknown function (DUF819); Inte	82.33
PF04172	215	LrgB: LrgB-like family ; InterPro: IPR007300 The t	81.5
PRK01821	133	hypothetical protein; Provisional	81.37
COG3493	438	CitS Na+/citrate symporter [Energy production and	81.2
COG0786	404	GltS Na+/glutamate symporter [Amino acid transport	81.1
PRK03818	552	putative transporter; Validated	80.24

>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.3e-51  Score=397.61  Aligned_cols=326  Identities=52%  Similarity=0.843  Sum_probs=298.9

Q ss_pred             HHHhhhhcccCccchHHHHHHHHHHHHHHHHHHHHhhcc--cCChhHHHHHHHHHHHHHHHhhcCCCCc---cccccChh
Q 018715            9 MERSLSMLSSDHKSVVSMNLFVALLCACIVIGHLLEENR--WMNESITALIIGLCTGIVILLTTNGTSS---HVLMFSED   83 (351)
Q Consensus         9 ~~~~~~~~~~~~~~~~~l~~~i~lL~~~~~~~~~l~~~~--~lP~~~~~ll~GillG~~~~~~~~~~~~---~~~~~~~~   83 (351)
                      ++.+.+-.++||++.+.+++++.+++++++.+|++++++  ++||.+..+++|+++|.+......+...   +...++|+
T Consensus        20 ~~~~~~~~~~e~~~~~al~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~~~   99 (575)
T KOG1965|consen   20 ISSDSSASEQEHASSVALLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFSPD   99 (575)
T ss_pred             cccccchhhhhhcchhhHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEeccc
Confidence            344555667899999999999999999999999999765  8999999999999999998887777666   66789999


Q ss_pred             HHHHHhhHHHhhHhhhcCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhhccccHHH
Q 018715           84 LFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVC  163 (351)
Q Consensus        84 ~~~~i~L~~ilF~aGl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~~  163 (351)
                      .|+.+.+|||+|++|++++.+.++||..++..++++|+.+++.+++..++++.......+++|.+|+++||++|||||+.
T Consensus       100 ~ff~vLLPpiif~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~f~d~L~fGaliSATDPVt  179 (575)
T KOG1965|consen  100 LFFLVLLPPIIFNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLSFKDCLAFGALISATDPVT  179 (575)
T ss_pred             HHHHHhhchhhhcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcccccccccHHHHHHHhhHhcccCchH
Confidence            99999999999999999999999999999999999999999999999988874433334899999999999999999999


Q ss_pred             HHHHhcccCC-chhHHHHHHHhhhhhHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018715          164 TLQVLNQDET-PLLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKK  242 (351)
Q Consensus       164 v~~il~~~~~-~~l~~~l~gEs~lnD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~~~G~~~~~l~~~  242 (351)
                      +++++++.++ |+++.+++|||++||++++|+++.+..+..++.+..+..+.+..++..+.++..+|++.|++.++++|+
T Consensus       180 vLaIfnel~vd~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~ig~Fl~~F~gS~~lGv~~GlisA~~lK~  259 (575)
T KOG1965|consen  180 VLAIFNELGVDPKLYTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGLGVAIGLISALVLKF  259 (575)
T ss_pred             HHHHHHHhCCCcceeeeeecchhccchhHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999997 689999999999999999999999999877665554555788999999999999999999999999999


Q ss_pred             HhhccCCCchhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018715          243 LYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVG  322 (351)
Q Consensus       243 ~~~~~~~~~~~~~l~l~~~~~~~~~ae~lg~Sgilav~~~Gl~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Fv~iG  322 (351)
                      .+.+ |.+..|..+.+.++|.+|++||.+|+||+++++.||+++++|.++|.++++|...+++|+.+++++|+++|.|+|
T Consensus       260 ~~l~-~~~~lE~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~G  338 (575)
T KOG1965|consen  260 LYLR-RTPSLESALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLG  338 (575)
T ss_pred             HHhc-CCcHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9765 778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccccchhhhh
Q 018715          323 MDALDIEKWRVVR  335 (351)
Q Consensus       323 ~~i~~~~~~~~~~  335 (351)
                      +.+..+++|.+.+
T Consensus       339 l~~f~~~k~~~~~  351 (575)
T KOG1965|consen  339 LSAFDFQKHVYKS  351 (575)
T ss_pred             HHHhcccceeeec
Confidence            9998888887764

>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3

Probab=100.00  E-value=1.1e-44  Score=363.18  Aligned_cols=303  Identities=31%  Similarity=0.542  Sum_probs=253.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhc-ccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCCh
Q 018715           25 SMNLFVALLCACIVIGHLLEEN-RWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKK  103 (351)
Q Consensus        25 ~l~~~i~lL~~~~~~~~~l~~~-~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~~  103 (351)
                      .+.+++.+..++.+.-++..|+ +++|+++..+++|+++|+.......   .+...++|+.+..+++|+|+|++|+++|+
T Consensus        10 ~~~~~~l~~~~~~~~~~~~~~~~~~lP~s~llil~GlllG~i~~~~~~---~~~~~l~~~lf~~~~LPpIlFe~g~~l~~   86 (559)
T TIGR00840        10 EFILWILLASLAKIGFHLTHKVIRAVPESVLLIVYGLLVGGIIKASPH---IDPPTLDSSYFFLYLLPPIVLDAGYFMPQ   86 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHcCCC---CccCCcCHHHHHHHHHHHHHHHHHhcCCH
Confidence            3444555555565655666654 4699999999999999987643322   12357889999999999999999999999


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--cCCCCHHHHHHHhhhhccccHHHHHHHhcccCCc-hhHHHH
Q 018715          104 KQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMN--IGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETP-LLYSLV  180 (351)
Q Consensus       104 ~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~--~~~~~~~~alllgailsaTdp~~v~~il~~~~~~-~l~~~l  180 (351)
                      +++|||+++++.++++|++++++++|..+|++.+..+  ..+++|..|+++||++|||||+++.+++|+.+.| |+.+++
T Consensus        87 ~~f~~n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPVAVlai~~~~~v~~~L~~ll  166 (559)
T TIGR00840        87 RNFFENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVAVLAVFEEYHVNEKLYIII  166 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchHHHHHHHHhcCCCcchhhhe
Confidence            9999999999999999999999999999987654322  2367999999999999999999999999999987 799999


Q ss_pred             HHHhhhhhHHHHHHHHHHHHhhhh---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHH
Q 018715          181 FGEGVVNDATSVVLFNAIQSFDLS---HINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALM  257 (351)
Q Consensus       181 ~gEs~lnD~~aivlf~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~G~~~G~~~~~l~~~~~~~~~~~~~~~~l~  257 (351)
                      +|||++||++++++|..+.++...   +.+..++...+..++...++|+++|.++|++..++.|+..   +.+..+..++
T Consensus       167 ~gESllNDavaIVLf~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~GGiliG~v~G~l~~~l~r~~~---~~~~~e~~l~  243 (559)
T TIGR00840       167 FGESLLNDAVTVVLYNTFIKFHKTADEPVTIVDVFEGCASFFVVTCGGLLVGVVFGFLVAFITRFTH---HIRQIEPLFV  243 (559)
T ss_pred             ehhhhhhccHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccchhHHHHH
Confidence            999999999999999988887642   2222334445566677778899999999999999999873   3345788899


Q ss_pred             HHHHHHHHHHHHhhccchHHHHHHHHHhhhcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc-cchhh
Q 018715          258 ILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDI-EKWRV  333 (351)
Q Consensus       258 l~~~~~~~~~ae~lg~Sgilav~~~Gl~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Fv~iG~~i~~~-~~~~~  333 (351)
                      +.++|++|.+||.+|.||++|+++||++++++.++|.+++++...+++|+.+++++|+++|+++|+++... ..|++
T Consensus       244 l~~~yl~Y~lAE~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~~~~~~  320 (559)
T TIGR00840       244 FLISYLSYLFAETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTENHEWNW  320 (559)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHH
Confidence            99999999999999999999999999999999888888888889999999999999999999999988543 34554

This model is specific for the eukaryotic members members of this family.

>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form

Probab=100.00  E-value=2.8e-41  Score=338.35  Aligned_cols=276  Identities=20%  Similarity=0.370  Sum_probs=238.4

Q ss_pred             HHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCChHHHHHhhHHHH
Q 018715           35 ACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIM  114 (351)
Q Consensus        35 ~~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~~~~l~~~~~~i~  114 (351)
                      ++......+.+|.++|+++++++.|+++||...     ..  ..+++|+.+..+++|+++|++|+++|++++||+++++.
T Consensus         8 ~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~-----~~--~~~~~~~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i~   80 (525)
T TIGR00831         8 MLATAVAVTVKFIRLPYPIALILAGLLLGLAGL-----LP--EVPLDREIVLFLFLPPLLFEAAMNTDLRELRENFRPIA   80 (525)
T ss_pred             HHHHHHHHHhcccCCCHHHHHHHHHHHHHhccc-----cC--CCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            334444566677999999999999999997422     11  24578888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhhccccHHHHHHHhcccCCc-hhHHHHHHHhhhhhHHHHH
Q 018715          115 LFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETP-LLYSLVFGEGVVNDATSVV  193 (351)
Q Consensus       115 ~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~~v~~il~~~~~~-~l~~~l~gEs~lnD~~aiv  193 (351)
                      .+++++++++++.++..+|++.      ++||..|+++|++++||||+++.+++|+.+.| |+.++++|||++||+++++
T Consensus        81 ~la~~~vlit~~~v~~~~~~~~------~l~~~~alllGails~TDpvav~~il~~~~~p~rl~~il~gESllND~~alv  154 (525)
T TIGR00831        81 LIAFLLVVVTTVVVGFSLNWIL------GIPLALALILGAVLSPTDAVAVLGTFKSIRAPKKLSILLEGESLLNDGAALV  154 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh------cccHHHHHHHHHHhCCCCHHHHHHHHhcCCCCHHHHHHHhhhhhhcchHHHH
Confidence            9999999999999998888854      89999999999999999999999999999988 7999999999999999999


Q ss_pred             HHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHhhcc
Q 018715          194 LFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYL  273 (351)
Q Consensus       194 lf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~~~G~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~ae~lg~  273 (351)
                      +|.+...+..+..+ .+..+....+++..++|+++|.++|++..++.|+.   .+++..+..++++++|++|++||.+|.
T Consensus       155 lf~~~~~~~~~~~~-~~~~~~~~~f~~~~~~gi~vG~~~g~~~~~l~~~~---~~~~~~~~~l~l~~~~~~y~lAe~lg~  230 (525)
T TIGR00831       155 VFAIAVAVALGKGV-FDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAK---IDDPLVEIALTILAPFAGFLLAERFHF  230 (525)
T ss_pred             HHHHHHHHHhcCCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccccHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99988877653211 12344567788889999999999999998877653   244556788999999999999999999


Q ss_pred             chHHHHHHHHHhhhccccc-CCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 018715          274 SGILTVFFCGIVMSHYTWH-NVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALD  327 (351)
Q Consensus       274 Sgilav~~~Gl~l~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~Fv~iG~~i~~  327 (351)
                      ||++|++++|++++|++++ +.+++.+...+++|+.+++++|+++|+++|++++.
T Consensus       231 SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~  285 (525)
T TIGR00831       231 SGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPG  285 (525)
T ss_pred             CHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998766 66777888889999999999999999999999975

This model is specific for the bacterial members of this family.

>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]

Probab=100.00  E-value=8.1e-41  Score=326.58  Aligned_cols=294  Identities=22%  Similarity=0.335  Sum_probs=245.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCChH
Q 018715           25 SMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKK  104 (351)
Q Consensus        25 ~l~~~i~lL~~~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~~~  104 (351)
                      .+.....++..+...+...+ ++++|+...+++.|++.||......+    .....+++.+..+++|+++|++|+|+|++
T Consensus         7 ~~~~~~lil~l~~~~~~~~~-~l~~~~i~~~ll~g~i~g~~~l~~~~----~~~~~~~el~~~l~l~ilLf~~g~~l~~~   81 (429)
T COG0025           7 LLFLLLLILLLGLLVSVLAG-RLLLPEIPLLLLLGLLGGPPGLNLIS----PDLELDPELFLVLFLAILLFAGGLELDLR   81 (429)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHHHhhhhhcccc----ccccCChHHHHHHHHHHHHHHhHhcCCHH
Confidence            33334444455555555555 48899999999999999976543221    11456788899999999999999999999


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhhccccHHHHHHHhcccCCc-hhHHHHHHH
Q 018715          105 QFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETP-LLYSLVFGE  183 (351)
Q Consensus       105 ~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~~v~~il~~~~~~-~l~~~l~gE  183 (351)
                      ++||+++++..++++++++|+..++...|+++|     ++++..|+++||+++||||+++.+++|+.+.| |+.++++||
T Consensus        82 ~l~~~~~~I~~La~~~v~it~~~~g~~~~~l~~-----~i~~~~a~l~gAilspTDPv~v~~i~~~~~vp~ri~~iL~gE  156 (429)
T COG0025          82 ELRRVWRSILVLALPLVLITALGIGLLAHWLLP-----GIPLAAAFLLGAILSPTDPVAVSPIFKRVRVPKRIRTILEGE  156 (429)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----ChhHHHHHHHhHHhcCCCchhhHHHHhcCCCCHHHHHHHHHH
Confidence            999999999999999999999999999999874     89999999999999999999999999999988 799999999


Q ss_pred             hhhhhHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCchhHHHHHHHHH
Q 018715          184 GVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRH-STDREVALMILMAY  262 (351)
Q Consensus       184 s~lnD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~~~G~~~~~l~~~~~~~~~-~~~~~~~l~l~~~~  262 (351)
                      |++||+++++.|.+..+...++.+. +..+....+++...+|+.+|.+.|+...++.++...++. ++..+..+++..++
T Consensus       157 Sl~ND~~giv~f~~~l~~~~~~~~~-~~~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~~~~~~~~~~i~L~~~~  235 (429)
T COG0025         157 SLLNDGVGIVLFKVALAALLGTGAF-SLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTSPLLETLLTLLLAF  235 (429)
T ss_pred             HHhhhHHHHHHHHHHHHHHhccCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHH
Confidence            9999999999999888876643221 134577889999999999999999999999999853221 24467889999999


Q ss_pred             HHHHHHHhhccchHHHHHHHHHhhhcccccCCCh-hHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 018715          263 LSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTE-SSRVTTKHAFATLSFVAEIFIFLYVGMDALDIE  329 (351)
Q Consensus       263 ~~~~~ae~lg~Sgilav~~~Gl~l~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~Fv~iG~~i~~~~  329 (351)
                      .+|..||.+|.||++|++++|++.++....+.++ +.|.+.++|||.+++++|.++|+++|.+++...
T Consensus       236 ~~~~~a~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~  303 (429)
T COG0025         236 AAYLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSL  303 (429)
T ss_pred             HHHHHHHHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            9999999999999999999999998433334333 457788899999999999999999999996543

>TIGR00844 c_cpa1 na(+)/h(+) antiporter

Probab=100.00  E-value=2e-36  Score=306.30  Aligned_cols=287  Identities=17%  Similarity=0.209  Sum_probs=229.1

Q ss_pred             HHHHHHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhH---HHHHhhHHHhhHhhhcCChH
Q 018715           28 LFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDL---FFIYLLPPIIFNAGFQVKKK  104 (351)
Q Consensus        28 ~~i~lL~~~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~---~~~i~L~~ilF~aGl~l~~~  104 (351)
                      .+...+++..+++.++++|.++|+++.++++|+++||......+...   ...+...   +.++++++++|.+|+++|++
T Consensus        17 ~lG~~lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~---~g~~d~i~leIteIvL~I~LFa~Gl~L~~~   93 (810)
T TIGR00844        17 CVGIFSSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPLS---WGNTDSITLEISRILLCLQVFAVSVELPRK   93 (810)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChhh---cccchHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence            33345566668888888789999999999999999997643222110   1111111   77899999999999999999


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhhccccHHHHHHHhcc---cCCc-hhHHHH
Q 018715          105 QFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQ---DETP-LLYSLV  180 (351)
Q Consensus       105 ~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~~v~~il~~---~~~~-~l~~~l  180 (351)
                      ++|++|+.+..++++++.++++++++++|++++     +++|..|+++|||++||||+.+.++++.   .+.| |+++++
T Consensus        94 ~Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~-----GL~~~~ALLLGAILAPTDPVLAssV~kg~~~~rvP~rLR~lL  168 (810)
T TIGR00844        94 YMLKHWVSVTMLLVPVMTSGWLVIALFVWILVP-----GLNFPASLLMGACITATDPVLAQSVVSGTFAQKVPGHLRNLL  168 (810)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHhhhcCCcHHHHHHHHhccccccCChHHHhHH
Confidence            999999999999999999999999999888853     8999999999999999999999999983   3566 699999


Q ss_pred             HHHhhhhhHHHHHHHHHHHHhhhh-c-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCchhHHHH
Q 018715          181 FGEGVVNDATSVVLFNAIQSFDLS-H-INLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRH-STDREVALM  257 (351)
Q Consensus       181 ~gEs~lnD~~aivlf~~~~~~~~~-~-~~~~~~~~~~~~~l~~~~~~~~~G~~~G~~~~~l~~~~~~~~~-~~~~~~~l~  257 (351)
                      ++||++||++|++++.+.+.+... + .......+.+..+++++++|+++|+++|++..++.++...++. ..+....+.
T Consensus       169 ~~ESGlNDGlAfpfv~LaL~ll~~~~~g~~~~~~w~l~~~L~~i~~GiliG~vvG~l~~~Ll~~l~rr~~i~~esfla~~  248 (810)
T TIGR00844       169 SCESGCNDGLAFPFVFLSMDLLLYPGRGGEIVKDWICVTILWECIFGSILGCIIGYCGRKAIRFAEGKNIIDRESFLAFY  248 (810)
T ss_pred             hhhhhcccHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHH
Confidence            999999999999988866555431 1 1111112246788999999999999999999999998752211 223345567


Q ss_pred             HHHHHHHHHHHHhhccchHHHHHHHHHhhhcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 018715          258 ILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDAL  326 (351)
Q Consensus       258 l~~~~~~~~~ae~lg~Sgilav~~~Gl~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Fv~iG~~i~  326 (351)
                      +++++.+|..++.+|.||++|+|++|++++|..+.    ..+.+..++|+.++.+++..+|+++|+.++
T Consensus       249 LaLAli~~gla~lLggSGfLAVFVAGl~~gn~~~~----~~~~~~~~f~e~ie~LLn~~lFVlLGa~L~  313 (810)
T TIGR00844       249 LILALTCAGFGSMLGVDDLLVSFFAGTAFAWDGWF----AQKTHESNVSNVIDVLLNYAYFVYLGSILP  313 (810)
T ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHHHHhcccch----hhhHHHhhHHHHHHHHHHHHHHHHHHHhhC
Confidence            88899999999999999999999999999986542    112234569999999999999999999985

This model is specific for the fungal members of this family.

>PRK05326 potassium/proton antiporter; Reviewed

Probab=100.00  E-value=8.7e-37  Score=309.36  Aligned_cols=288  Identities=20%  Similarity=0.209  Sum_probs=231.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCC
Q 018715           23 VVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVK  102 (351)
Q Consensus        23 ~~~l~~~i~lL~~~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~  102 (351)
                      +..+++...++++...+...+.||.++|..++++++|+++||......+..+.   + ..+.+.++++++++|++|+++|
T Consensus         4 ~~~~ll~~~~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~---~-~~~~i~~l~L~~iLF~~Gl~~~   79 (562)
T PRK05326          4 INSLLLIGALLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNY---P-LAYLVGNLALAVILFDGGLRTR   79 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcH---H-HHHHHHHHHHHHHHHcCccCCC
Confidence            34445455444444444444555689999999999999999854321110100   1 1245889999999999999999


Q ss_pred             hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhhccccHHHHHHHhcccC--Cc-hhHHH
Q 018715          103 KKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDE--TP-LLYSL  179 (351)
Q Consensus       103 ~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~~v~~il~~~~--~~-~l~~~  179 (351)
                      ++.+||+++++..+++.++++++..++..+++++      +++|..|+++|+++++|||+++.+++++.+  .+ |++++
T Consensus        80 ~~~l~~~~~~~~~la~~gv~~t~~~~g~~~~~l~------g~~~~~alllgai~s~Td~a~v~~iL~~~~l~l~~~v~~~  153 (562)
T PRK05326         80 WSSFRPALGPALSLATLGVLITAGLTGLFAHWLL------GLDWLEGLLLGAIVGSTDAAAVFSLLRGKGLNLKERVAST  153 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCHHHHHHHhhhhccCchHHHHHHHhccCCCcchhHHhH
Confidence            9999999999999999999999988888888887      899999999999999999999999999988  66 79999


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHH
Q 018715          180 VFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMIL  259 (351)
Q Consensus       180 l~gEs~lnD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~~~G~~~~~l~~~~~~~~~~~~~~~~l~l~  259 (351)
                      +++||.+||+++++++..+.++..++.++.++ ..+..+++++.+++++|+++|+...++.++.+  ++.++....++++
T Consensus       154 l~~eS~~nD~~ai~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~G~~~g~l~~~l~~~~~--~~~~~~~~i~~l~  230 (562)
T PRK05326        154 LEIESGSNDPMAVFLTITLIELITGGETGLSW-GFLLLFLQQFGLGALIGLLGGWLLVQLLNRIA--LPAEGLYPILVLA  230 (562)
T ss_pred             hhhhhhcccHHHHHHHHHHHHHHhCCCCcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CchhhHHHHHHHH
Confidence            99999999999999999887776433222222 23567788899999999999999998888763  2234456788899


Q ss_pred             HHHHHHHHHHhhccchHHHHHHHHHhhhcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 018715          260 MAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDI  328 (351)
Q Consensus       260 ~~~~~~~~ae~lg~Sgilav~~~Gl~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Fv~iG~~i~~~  328 (351)
                      .++++|++||.+|.||++|++++|++++|.+.     +.++..+++++.+++++++++|+++|+.+++.
T Consensus       231 ~~l~~~~~a~~lg~Sg~la~~iaGl~l~n~~~-----~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~  294 (562)
T PRK05326        231 GALLIFALTAALGGSGFLAVYLAGLVLGNRPI-----RHRHSILRFFDGLAWLAQIGMFLVLGLLVTPS  294 (562)
T ss_pred             HHHHHHHHHHHHCCcHHHHHHHHHHHHhCCcc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            99999999999999999999999999997643     23345778999999999999999999999654

>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.6e-37  Score=298.51  Aligned_cols=301  Identities=31%  Similarity=0.554  Sum_probs=252.0

Q ss_pred             HHHHHHHHHHHHHHHHHhh-cccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCChHH
Q 018715           27 NLFVALLCACIVIGHLLEE-NRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQ  105 (351)
Q Consensus        27 ~~~i~lL~~~~~~~~~l~~-~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~~~~  105 (351)
                      .+++++..++.+.-|...+ +..+|+++.++++|+++|.+........   ...++|+.|+.+.||||++++|+-++.|.
T Consensus        45 ~lwil~asLaKi~fh~~~~l~~i~PES~lLI~~Gl~lG~ii~~~~~~~---~~~L~s~vFFlyLLPPIvlDAGYfMp~r~  121 (670)
T KOG1966|consen   45 TLWILVASLAKIVFHLMPKLRKIVPESCLLIILGLVLGGIIKALATIA---PFFLESDVFFLYLLPPIVLDAGYFMPNRA  121 (670)
T ss_pred             HHHHHHHHHHHhcccccccccccCchhHHHHHHHHHHHHHHHhhhccc---cccccccchhhhhcCHHHhcccccCccHH
Confidence            3344444445554455544 3459999999999999998876543222   24567889999999999999999999999


Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC--CCHHHHHHHhhhhccccHHHHHHHhcccCCch-hHHHHHH
Q 018715          106 FFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGT--LKIGDYLAIGAIFAATDSVCTLQVLNQDETPL-LYSLVFG  182 (351)
Q Consensus       106 l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~--~~~~~alllgailsaTdp~~v~~il~~~~~~~-l~~~l~g  182 (351)
                      |.+|...+++.|++|++..++.++..+|.+. ..++-+  .+...-+++|+++|+.||++|+++++|.+..+ +..++.|
T Consensus       122 Ff~NlgtILlfAVvGTi~Na~~~g~sL~~i~-~~glf~~~~glld~LlFgSLIsAVDPVAVLaVFEEihVNe~LfI~VFG  200 (670)
T KOG1966|consen  122 FFENLGTILLFAVVGTIWNAFTIGASLYAIS-LSGLFGMSIGLLDILLFGSLISAVDPVAVLAVFEEIHVNEVLFIIVFG  200 (670)
T ss_pred             HHhccchhhhHHHHHHHHHHHHHHHHHHHHH-HhhhcCCCchHHHHHHHHHHHHhcCchhhhhhhhhhccccEEEeeeeh
Confidence            9999999999999999999998887776543 333323  66889999999999999999999999999775 8999999


Q ss_pred             HhhhhhHHHHHHHHHHHHhhhh---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHH
Q 018715          183 EGVVNDATSVVLFNAIQSFDLS---HINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMIL  259 (351)
Q Consensus       183 Es~lnD~~aivlf~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~G~~~G~~~~~l~~~~~~~~~~~~~~~~l~l~  259 (351)
                      ||++||++.+++|+.+.++..-   +....+....+.+++...+||+++|+++|++.++..|+.   ++-+..|+.+.+.
T Consensus       201 ESLlNDaVTVVLY~~f~sf~~ig~~n~~~~d~~~G~~sFfVVslGG~lvGivfafl~sl~tkft---~~vrviePvfif~  277 (670)
T KOG1966|consen  201 ESLLNDAVTVVLYNMFISFVEIGSDNLTTIDYVLGVVSFFVVSLGGALVGIVFAFLASLVTKFT---KHVRVLEPVFIFL  277 (670)
T ss_pred             hhhhcCceEEehHHHHHHHHHhcccceeEeeeecceeEEEEEecCchhHHHHHHHHHHHHHHhh---cceeeecchhhhh
Confidence            9999999999999999888653   222223334566777778999999999999999999976   4666789999999


Q ss_pred             HHHHHHHHHHhhccchHHHHHHHHHhhhcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccc-chhhh
Q 018715          260 MAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIE-KWRVV  334 (351)
Q Consensus       260 ~~~~~~~~ae~lg~Sgilav~~~Gl~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Fv~iG~~i~~~~-~~~~~  334 (351)
                      ++|++|..||.+|+||++|..+||+.+++|-+.|+++++....+.+.++++...|+++|+++|.+..+-+ .|++.
T Consensus       278 ~pYlaYL~aEm~hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~~~h~wd~~  353 (670)
T KOG1966|consen  278 LPYLAYLTAEMFHLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVSSNHHWDFA  353 (670)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhcCCcceeehh
Confidence            9999999999999999999999999999999999999999999999999999999999999999997653 35554

>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.2e-33  Score=262.06  Aligned_cols=295  Identities=20%  Similarity=0.235  Sum_probs=244.5

Q ss_pred             HHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccCh----hHHHHHhhHHHhhHhhhcCChHHHH
Q 018715           32 LLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSE----DLFFIYLLPPIIFNAGFQVKKKQFF  107 (351)
Q Consensus        32 lL~~~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~----~~~~~i~L~~ilF~aGl~l~~~~l~  107 (351)
                      +...+++.+.+.. |.+.|-....+.+|++.|      .++...  +++|+    ....++++.+|+|++|++++++.+|
T Consensus        15 lvivsif~s~~ss-rfGvP~LllFl~iGm~aG------~dGlg~--I~fdNy~~Ay~vg~lALaiILfdgG~~T~lss~r   85 (574)
T COG3263          15 LVIVSIFSSLISS-RFGVPLLLLFLSIGMLAG------VDGLGG--IEFDNYPFAYMVGNLALAIILFDGGFGTQLSSFR   85 (574)
T ss_pred             HHHHHHHHHHHHH-HcCchHHHHHHHHHHHcC------CCcccc--cccCccHHHHHHHHHHHHHHhhcCccCCcHHHHH
Confidence            3444555555555 599999999999999998      344331  33333    3466899999999999999999999


Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhhccccHHHHHHHhcccCCc-hhHHHHHHHhhh
Q 018715          108 RNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETP-LLYSLVFGEGVV  186 (351)
Q Consensus       108 ~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~~v~~il~~~~~~-~l~~~l~gEs~l  186 (351)
                      ...++.+.++.+|+++|+.+++..++|++      +++|.+++++||++.+||.++|.+++++.+.+ |+++++|-||.-
T Consensus        86 ~a~~palsLATlGVl~Ts~Ltg~aA~~ll------~l~wle~~LiGAiVgSTDAAAVF~lL~~~nl~erv~stLEiESGt  159 (574)
T COG3263          86 VAAGPALSLATLGVLITSGLTGVAAAYLL------NLDWLEGLLIGAIVGSTDAAAVFSLLGGKNLNERVASTLEIESGS  159 (574)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHhhccccHHHHHHHHccCChhhhhhhhEEeecCC
Confidence            99999999999999999999999999999      99999999999999999999999999988865 899999999999


Q ss_pred             hhHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHH
Q 018715          187 NDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYM  266 (351)
Q Consensus       187 nD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~~~G~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~  266 (351)
                      ||++|+.+.-.++.+..++.++.++. .+..+++++..|+++|...|+...+..+|..   -++...+.+.++..++.|.
T Consensus       160 NDPmAvfLTitlieli~~get~l~~~-~ll~f~~q~glG~l~G~~gg~l~~~~Inr~n---Ld~GL~pil~la~~Ll~fs  235 (574)
T COG3263         160 NDPMAVFLTITLIELIAGGETNLSWG-FLLGFLQQFGLGLLLGLGGGKLLLQLINRIN---LDSGLYPILALAGGLLIFS  235 (574)
T ss_pred             CCceeeehhHHHHHHHhccccccCHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc---cccchhHHHHHHHHHHHHH
Confidence            99999999988888766553333443 4445899999999999999999999999873   3456778999999999999


Q ss_pred             HHHhhccchHHHHHHHHHhhhcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhhhcccceeeeeec
Q 018715          267 LAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRVVRDSLPVQAIPSC  346 (351)
Q Consensus       267 ~ae~lg~Sgilav~~~Gl~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Fv~iG~~i~~~~~~~~~~~~~~~~~i~~~  346 (351)
                      +++.+|.||++|+++||+..+|.+     -+.|+...+|.|-++++++..+|...|...+|.+.|..-.-+..+-.....
T Consensus       236 ~t~aiGGsG~LaVYl~Gll~GN~~-----i~~r~~I~~f~dG~twlaQI~MFlvLGLLvtPsql~~iavPailL~l~mif  310 (574)
T COG3263         236 LTGAIGGSGILAVYLAGLLLGNRP-----IRARHGILRFFDGLAWLAQILMFLVLGLLVTPSQLLPIAIPAILLSLWMIF  310 (574)
T ss_pred             HHHHhcCcccHHHHHHHHHhCCCc-----chhHHHHHHHhccHHHHHHHHHHHHHHHhcCHhhhhHhhHHHHHHHHHHHH
Confidence            999999999999999999999654     355677889999999999999999999999998888764333333333333


Q ss_pred             ccCC
Q 018715          347 MGTP  350 (351)
Q Consensus       347 ~~~~  350 (351)
                      +++|
T Consensus       311 vaRP  314 (574)
T COG3263         311 VARP  314 (574)
T ss_pred             HHhH
Confidence            4444

>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family

Probab=99.97  E-value=9.3e-29  Score=229.33  Aligned_cols=267  Identities=18%  Similarity=0.223  Sum_probs=206.6

Q ss_pred             HHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCChHHHHHhhHHHHH
Q 018715           36 CIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIML  115 (351)
Q Consensus        36 ~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~~~~l~~~~~~i~~  115 (351)
                      +.+.+... ||.++|+++++++.|+++||......+  +.+    .-+.+.++++.+++|.+|+|+|++++||++++...
T Consensus         4 a~~~~~l~-~~l~lP~~v~~il~GillGp~~lg~i~--~~~----~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~~   76 (273)
T TIGR00932         4 AVLAVPLS-RRLGIPSVLGYLLAGVLIGPSGLGLIS--NVE----GVNHLAEFGVILLMFLIGLELDLERLWKLRKAAFG   76 (273)
T ss_pred             HHHHHHHH-HHhCCCHHHHHHHHHHHhCcccccCCC--ChH----HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            34445554 459999999999999999986432211  111    12347899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhhccccHHHHHHHhcccCC-c-hhHHHHHHHhhhhhHHHHH
Q 018715          116 FGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDET-P-LLYSLVFGEGVVNDATSVV  193 (351)
Q Consensus       116 la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~~v~~il~~~~~-~-~l~~~l~gEs~lnD~~aiv  193 (351)
                      ++..+++++++.++...++.+      ++++..++++|+++++|||+++.++++|.+. + +.++++.+|+.+||..+++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~D~~~i~  150 (273)
T TIGR00932        77 VGVLQVLVPGVLLGLLLGHLL------GLALGAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQDIAVVP  150 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHHHHHHHH
Confidence            999999999777777666666      8999999999999999999999999999884 3 7999999999999999999


Q ss_pred             HHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHhhcc
Q 018715          194 LFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYL  273 (351)
Q Consensus       194 lf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~~~G~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~ae~lg~  273 (351)
                      .+.+......+...  +...............++.+.+.++...+..|+... +++++.+...++..++..+.++|.+|.
T Consensus       151 ~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~la~~~g~  227 (273)
T TIGR00932       151 LLALLPLLATSAST--EHVALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAE-LRPSELFTAGSLLLMFGSAYFADLLGL  227 (273)
T ss_pred             HHHHHHHHhcCCCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCchHHHHHHHHHHHHHHHHHHHhCC
Confidence            99988766543211  111122233344445556666777777777777643 233456677888999999999999999


Q ss_pred             chHHHHHHHHHhhhcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 018715          274 SGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDA  325 (351)
Q Consensus       274 Sgilav~~~Gl~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Fv~iG~~i  325 (351)
                      |+++|++++|++++|..+       +++.++..+.+..++.+++|+++|+++
T Consensus       228 s~~lgaf~aGl~~~~~~~-------~~~l~~~l~~~~~~f~plFF~~~G~~~  272 (273)
T TIGR00932       228 SMALGAFLAGVVLSESEY-------RHKLESDLEPIGGVLLPLFFISVGMSV  272 (273)
T ss_pred             cHHHHHHHHHHHHcCCch-------HHHHHHHHHhHHHHHHHHHHHHhCccC
Confidence            999999999999997432       123445556666899999999999876

>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]

Probab=99.95  E-value=3.3e-30  Score=249.76  Aligned_cols=272  Identities=24%  Similarity=0.354  Sum_probs=57.1

Q ss_pred             HHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCChHHHHHhhHHHHH
Q 018715           36 CIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIML  115 (351)
Q Consensus        36 ~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~~~~l~~~~~~i~~  115 (351)
                      +.+.+. +.||.++|+.+++++.|+++||......++.     ....+.+.++++++++|++|+|+|.+++||++++...
T Consensus         8 ~~~~~~-l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~~~-----~~~~~~l~~i~l~~llF~~G~~~d~~~l~~~~~~~~~   81 (380)
T PF00999_consen    8 AFVAGI-LFRRLGIPSIIGYILVGIVLGPSGLGLLEPD-----NPSFELLAEIGLAFLLFEAGLELDIKELRRNWRRALA   81 (380)
T ss_dssp             ----------------------------------------------S-SSHHHHS--SSHHHHTTGGGG-----------
T ss_pred             HHHHHH-HHHHhCCCHHHHHHHheeehhhhhhhhccch-----hhHHHHHHHHHHHHHHHHHHHhhcccccccccccccc
Confidence            333444 4667999999999999999999765422111     1233558999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhhccccHHHHHHHhccc-CCc-hhHHHHHHHhhhhhHHHHH
Q 018715          116 FGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQD-ETP-LLYSLVFGEGVVNDATSVV  193 (351)
Q Consensus       116 la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~~v~~il~~~-~~~-~l~~~l~gEs~lnD~~aiv  193 (351)
                      .++.++.+++..++...++.+   ...++++..++++|+++++|||+.+.++++|. +.+ +.++++.+|+.+||..+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~~i~d~~~i~  158 (380)
T PF00999_consen   82 LGLVGFLLPFILVGFLLSFFL---FILGLSWAEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSESVINDIIAII  158 (380)
T ss_dssp             -----------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTTTTTTTTTTT
T ss_pred             cccceeeehhhHHHHHHHHhh---ccchhhhHHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhhchhhccchhh
Confidence            999999999877677766421   00189999999999999999999999999765 445 7999999999999999999


Q ss_pred             HHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHhhcc
Q 018715          194 LFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYL  273 (351)
Q Consensus       194 lf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~~~G~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~ae~lg~  273 (351)
                      ++.+..+..+.+ ...+..+....++.....+.+.|...+++..+..|+.   +++++.+...+++.++..|+.+|.+|.
T Consensus       159 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~a~~~g~  234 (380)
T PF00999_consen  159 LLSILISLAQAS-GQSSLGQLLLSFLWIILIGIVIGLLFGWLLRRLIRRA---SPSSEIFILLVLALILLLYGLAEILGL  234 (380)
T ss_dssp             TT------------------------------------------------------------------------------
T ss_pred             hhhhhhhhhccc-ccccccchhcchhhhhhhheeeecccchHHHHhhhhc---cccchhhHHHHHHHHhhhccccccccc
Confidence            999888776221 1223333444455555555555555554444444432   245567788999999999999999999


Q ss_pred             chHHHHHHHHHhhhcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 018715          274 SGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDAL  326 (351)
Q Consensus       274 Sgilav~~~Gl~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Fv~iG~~i~  326 (351)
                      |++++++++|+.+++.+.++   +.+++.+++++   .++++++|+++|++++
T Consensus       235 s~~l~af~~Gl~~~~~~~~~---~~~~~l~~~~~---~~~~~lfF~~iG~~~~  281 (380)
T PF00999_consen  235 SGILGAFIAGLILSNSPFAE---RLEEKLESFWY---GFFIPLFFVFIGMSLD  281 (380)
T ss_dssp             -----------------------------------------------------
T ss_pred             cccceeeeeehccccccccc---hhhhcccchhh---HHHhhHHhhhhccccc
Confidence            99999999999999544322   23334444554   7999999999999996

These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.

>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]

Probab=99.95  E-value=2.6e-26  Score=208.24  Aligned_cols=299  Identities=17%  Similarity=0.204  Sum_probs=232.3

Q ss_pred             HHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCChHHHHHhhHHHHHHH
Q 018715           38 VIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFG  117 (351)
Q Consensus        38 ~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~~~~l~~~~~~i~~la  117 (351)
                      +.+...++|..+.+.....+.|+++||...+..+......-+.-...+.++.|.+..|.++.|++..++.++|+.++.+-
T Consensus        27 l~S~yikekLllgEa~va~itGlI~Gphvlnlfdp~~wgn~d~it~ei~RvvLcvqvfava~eLPr~Y~l~~w~Si~vll  106 (467)
T KOG4505|consen   27 LASLYIKEKLLLGEATVAVITGLIFGPHVLNLFDPNSWGNKDYITYEISRVVLCVQVFAVAMELPRAYMLEHWRSIFVLL  106 (467)
T ss_pred             HHHHHHHHhHhccchHHhhhhheeechhhhhhcCCccccCcchhhhhhhhhhHhHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            56778888899999999999999999988765443321111111233789999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhhccccHHHHHHHhccc----CCc-hhHHHHHHHhhhhhHHHH
Q 018715          118 AVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQD----ETP-LLYSLVFGEGVVNDATSV  192 (351)
Q Consensus       118 ~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~~v~~il~~~----~~~-~l~~~l~gEs~lnD~~ai  192 (351)
                      .+-++..+.+.+..+|.+.|     ++++..+++++++++||||+...++..+.    ++| |+++++.+||..||++|+
T Consensus       107 lpVmi~gwlvs~~fvy~l~p-----~lnf~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeriR~lL~AESGcNDGMai  181 (467)
T KOG4505|consen  107 LPVMIIGWLVSFGFVYALIP-----NLNFLTSLLIAACITATDPILSSSIVGGGKFAKRVPERIRNLLAAESGCNDGMAI  181 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhc-----cccHHHHHHHHHHccCCchhHHHHHhcCchHhhhChHHHHHHHHHhcCCCCCcch
Confidence            99898888888888887764     89999999999999999999999999864    367 799999999999999999


Q ss_pred             HHHHHHHHhhhhccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchh--HHHHHHHHHHHHHH
Q 018715          193 VLFNAIQSFDLSHIN---LSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDRE--VALMILMAYLSYML  267 (351)
Q Consensus       193 vlf~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~G~~~G~~~~~l~~~~~~~~~~~~~~--~~l~l~~~~~~~~~  267 (351)
                      .++...+.+......   ..+|  .....+++...|.++|.+.|++....+|+...+ +..+.|  ..+-+.+++++.++
T Consensus       182 pflflai~Ll~h~~~r~~~rdw--v~~~iLyec~fg~llG~vIG~l~r~~lk~aekk-rlid~eSfl~~~vvl~lfc~gi  258 (467)
T KOG4505|consen  182 PFLFLAIDLLRHKPRRKAGRDW--VCDNILYECFFGCLLGCVIGYLSRQGLKFAEKK-RLIDRESFLIFYVVLALFCMGI  258 (467)
T ss_pred             hHHHHHHHHHhcCchhccCCce--ehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHhhh
Confidence            988766665432211   1223  667789999999999999999999999988643 333444  45567788899999


Q ss_pred             HHhhccchHHHHHHHHHhhhcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc--c--cchhhhhcccceeee
Q 018715          268 AELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALD--I--EKWRVVRDSLPVQAI  343 (351)
Q Consensus       268 ae~lg~Sgilav~~~Gl~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Fv~iG~~i~~--~--~~~~~~~~~~~~~~i  343 (351)
                      .+.+|.+.++-.|++|.+.+++++..  +++  +..+..+.++.+++..+|+|.|..++-  +  ..-+.=.|+..++.|
T Consensus       259 gtiiGvddLl~sFfAGi~Fswd~wFs--k~t--~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s~~gl~vwrlvilsi  334 (467)
T KOG4505|consen  259 GTIIGVDDLLVSFFAGIVFSWDEWFS--KKT--KESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSVEGLPVWRLVILSI  334 (467)
T ss_pred             hheechhHHHHHHHhhhhcchhHHhh--hhh--hhccHHHHHHHHHHHHHHHHhccccchhhcCCcccCchHHHHHHHHH
Confidence            99999999999999999999876542  222  223456777889999999999998842  1  111222344556666


Q ss_pred             eeccc
Q 018715          344 PSCMG  348 (351)
Q Consensus       344 ~~~~~  348 (351)
                      ..+..
T Consensus       335 ~iif~  339 (467)
T KOG4505|consen  335 TIIFI  339 (467)
T ss_pred             HHHHh
Confidence            55544

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]

Probab=99.94  E-value=2.9e-24  Score=208.50  Aligned_cols=281  Identities=18%  Similarity=0.217  Sum_probs=202.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCChH
Q 018715           25 SMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKK  104 (351)
Q Consensus        25 ~l~~~i~lL~~~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~~~  104 (351)
                      .+.....++..+.+.+++.+ |.++|.++++++.|+++||....... ..++    .-+.+.++++..++|.+|+|.|.+
T Consensus         7 ~l~~~~iiL~~a~i~~~l~~-rl~lp~vlg~llaGiilGp~~~~~~~-~~~~----~i~~laelGvi~LlF~~GLE~~~~   80 (397)
T COG0475           7 ILLQLLILLLVAVILGPLFK-RLGLPPVLGYLLAGIILGPWGLLLII-ESSE----IIELLAELGVVFLLFLIGLEFDLE   80 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HcCCchHHHHHHHHHhcCcccccccC-CchH----HHHHHHHHhHHHHHHHHHHCcCHH
Confidence            33344456666777775554 59999999999999999982221111 1111    113478999999999999999999


Q ss_pred             HHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhhccccHHHHHHHhcccCC-c-hhHHHHH
Q 018715          105 QFFRNFMT-IMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDET-P-LLYSLVF  181 (351)
Q Consensus       105 ~l~~~~~~-i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~~v~~il~~~~~-~-~l~~~l~  181 (351)
                      ++||++++ ....+..+...+........+..+      ++++..++++|++++.||.+.+.++++|.|. + |.+++..
T Consensus        81 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------g~~~~~al~lg~~l~~sS~~i~~~iL~e~~~~~~~~g~~~l  154 (397)
T COG0475          81 RLKKVGRSVGLGVAQVGLTAPFLLGLLLLLGIL------GLSLIAALFLGAALALSSTAIVLKILMELGLLKTREGQLIL  154 (397)
T ss_pred             HHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHh------ccChHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence            99999999 666665665555333322221124      8999999999999999999999999999873 3 7999999


Q ss_pred             HHhhhhhHHHHHHHHHHHHhhhhccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHH
Q 018715          182 GEGVVNDATSVVLFNAIQSFDLSHINL-SIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILM  260 (351)
Q Consensus       182 gEs~lnD~~aivlf~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~G~~~G~~~~~l~~~~~~~~~~~~~~~~l~l~~  260 (351)
                      +..++||..++++..++..+..++... ..+.................|   -++..+..|+... .+.++.....++..
T Consensus       155 ~~~i~~Di~~i~lLai~~~l~~~g~~~~~~~~~~~~~~~~f~~~~l~~g---~~l~~~~~r~~~~-~~~~e~~~~~~l~i  230 (397)
T COG0475         155 GALVFDDIAAILLLAIVPALAGGGSGSVGFILGLLLAILAFLALLLLLG---RYLLPPLFRRVAK-TESSELFILFVLLL  230 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCCccHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHh-ccchHHHHHHHHHH
Confidence            999999999999999988876543222 112222222222222222222   2566666666642 24556677889999


Q ss_pred             HHHHHHHHHhhccchHHHHHHHHHhhhcccccCCChhHHHHHHHHHHHHHH-HHHHHHHHHhhhhhcc
Q 018715          261 AYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSF-VAEIFIFLYVGMDALD  327 (351)
Q Consensus       261 ~~~~~~~ae~lg~Sgilav~~~Gl~l~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~Fv~iG~~i~~  327 (351)
                      ++...+++|..|.|.++++|.+|+.++...+++      ++.++-.+.+.+ ++-++||+.+|++++.
T Consensus       231 ~l~~a~l~e~~gls~ilGAFlaGl~ls~~~~~~------~~l~~~i~~~~~~~fiplFFi~vG~~~dl  292 (397)
T COG0475         231 VLGAAYLAELLGLSMILGAFLAGLLLSESEYRK------HELEEKIEPFGDGLFIPLFFISVGMSLDL  292 (397)
T ss_pred             HHHHHHHHHHhChhHHHHHHHHHHHhcccccch------HHHHHHHHhHHhHHHHHHHHHHhhHHcCH
Confidence            999999999999999999999999999654321      345556677777 9999999999999964

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=99.93  E-value=5.8e-24  Score=217.24  Aligned_cols=277  Identities=15%  Similarity=0.130  Sum_probs=197.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCChHH
Q 018715           26 MNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQ  105 (351)
Q Consensus        26 l~~~i~lL~~~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~~~~  105 (351)
                      .+..+.+++.+..+...+.||.++|.+++++++|+++||......+  ..+    +-+.+.++++.+++|..|+|+|+++
T Consensus         6 ~l~~~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~--~~~----~i~~laelGvv~LlF~iGLEl~~~~   79 (621)
T PRK03562          6 TLIQALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVT--DVE----SILHFAEFGVVLMLFVIGLELDPQR   79 (621)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCC--CHH----HHHHHHHHHHHHHHHHHHhCcCHHH
Confidence            3333443444444444455569999999999999999986432211  110    1134789999999999999999999


Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhhccccHHHHHHHhcccCC--chhHHHHHHH
Q 018715          106 FFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDET--PLLYSLVFGE  183 (351)
Q Consensus       106 l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~~v~~il~~~~~--~~l~~~l~gE  183 (351)
                      +|+.+++++.++..++.+++.+.+...+ .+      +++|..++++|.+++.|+++.+.++++|.+.  ++.++...+.
T Consensus        80 l~~~~~~~~~~g~~qv~~~~~~~~~~~~-~~------g~~~~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G~~~l~~  152 (621)
T PRK03562         80 LWKLRRSIFGGGALQMVACGGLLGLFCM-LL------GLRWQVALLIGLGLALSSTAIAMQAMNERNLMVTQMGRSAFAI  152 (621)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHH
Confidence            9999999999999999998776655444 44      8999999999999999999999999999883  3689999999


Q ss_pred             hhhhhHHHHHHHHHHHHhhhhccc--hHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhccCCCchhHHHHHHH
Q 018715          184 GVVNDATSVVLFNAIQSFDLSHIN--LSIALKFVGSFFYLFIASTMLGVIAG-LLSAFIIKKLYMGRHSTDREVALMILM  260 (351)
Q Consensus       184 s~lnD~~aivlf~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~G~~~G-~~~~~l~~~~~~~~~~~~~~~~l~l~~  260 (351)
                      .++||..+++++.++..+...+.+  ....+...    ...++.++..++.| ++..+++++... ++.++.....++.+
T Consensus       153 ll~~Dl~~i~ll~l~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~l~~~l~~~~~~-~~~~e~~~~~~l~l  227 (621)
T PRK03562        153 LLFQDIAAIPLVAMIPLLAASGASTTLGAFALSA----LKVAGALALVVLGGRYVTRPALRFVAR-SGLREVFTAVALFL  227 (621)
T ss_pred             HHHHHHHHHHHHHHHHHHccCCCccchhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchHHHHHHHHH
Confidence            999999999888876544332111  11111111    12222222233333 344555555532 23445556667788


Q ss_pred             HHHHHHHHHhhccchHHHHHHHHHhhhcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 018715          261 AYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALD  327 (351)
Q Consensus       261 ~~~~~~~ae~lg~Sgilav~~~Gl~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Fv~iG~~i~~  327 (351)
                      ++++.+++|.+|+|..+|+|++|+++++.+.       +++.++..+.+..++.++||+.+|++++.
T Consensus       228 v~~~a~la~~~Gls~~lGAFlAGl~l~~~~~-------~~~le~~i~pf~~lll~lFFi~vG~~id~  287 (621)
T PRK03562        228 VFGFGLLMEEVGLSMALGAFLAGVLLASSEY-------RHALESDIEPFKGLLLGLFFIAVGMSIDF  287 (621)
T ss_pred             HHHHHHHHHHhCccHHHHHHHHHHHhcCCcc-------HHHHHHHHHHHHHHHHHHHHHHhhhhccH
Confidence            8999999999999999999999999995322       23344455555668889999999999954

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=99.92  E-value=7.2e-23  Score=208.78  Aligned_cols=271  Identities=15%  Similarity=0.100  Sum_probs=191.8

Q ss_pred             HHHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCChHHHHHhh
Q 018715           31 ALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNF  110 (351)
Q Consensus        31 ~lL~~~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~~~~l~~~~  110 (351)
                      .+++.+..+...+.||.++|.+++++++|+++||......+  +.+    .-+.+.++++.+++|..|+|+|++++|+.+
T Consensus        11 ~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~--~~~----~i~~laelGvv~LLF~iGLel~~~~l~~~~   84 (601)
T PRK03659         11 VLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFIS--DVD----EILHFSELGVVFLMFIIGLELNPSKLWQLR   84 (601)
T ss_pred             HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCC--cHH----HHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            33334444444455569999999999999999996432211  110    113478999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhhccccHHHHHHHhcccCCc--hhHHHHHHHhhhhh
Q 018715          111 MTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETP--LLYSLVFGEGVVND  188 (351)
Q Consensus       111 ~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~~v~~il~~~~~~--~l~~~l~gEs~lnD  188 (351)
                      +.++.++..++++++.+.+...++ +      +++|..++++|..++.||++.+.++++|.+..  +.+++..+..++||
T Consensus        85 ~~~~~~g~~~v~~t~~~~~~~~~~-~------g~~~~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G~~~l~vll~~D  157 (601)
T PRK03659         85 RSIFGVGAAQVLLSAAVLAGLLML-T------DFSWQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQLGFSVLLFQD  157 (601)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-H------ccCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHHHHHHHHHHHH
Confidence            999999999999998776655443 4      88999999999999999999999999998843  58899999999999


Q ss_pred             HHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHH
Q 018715          189 ATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAG-LLSAFIIKKLYMGRHSTDREVALMILMAYLSYML  267 (351)
Q Consensus       189 ~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~~~G-~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~  267 (351)
                      ..+++++.++..+.....+...+..... .    +..++..+..| ++..++.++... .+.++.....++.+++++.++
T Consensus       158 i~~i~ll~l~~~l~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~l~~vl~~a~l  231 (601)
T PRK03659        158 LAVIPALALVPLLAGSADEHFDWMKIGM-K----VLAFAGMLIGGRYLLRPLFRFIAA-SGVREVFTAAALLLVLGSALF  231 (601)
T ss_pred             HHHHHHHHHHHHHhcCCCcchHHHHHHH-H----HHHHHHHHHHHHHHHHHHHHHHHH-cCCchHHHHHHHHHHHHHHHH
Confidence            9888887766544332211111211111 1    11111122223 334445555432 233455556667778888889


Q ss_pred             HHhhccchHHHHHHHHHhhhcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 018715          268 AELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALD  327 (351)
Q Consensus       268 ae~lg~Sgilav~~~Gl~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Fv~iG~~i~~  327 (351)
                      +|.+|+|+.+++|++|+++++.+       .+++.++..+.+..++.++||+.+|++++.
T Consensus       232 ~~~~Gls~~LGAFlaGl~l~~s~-------~~~~l~~~i~pf~~lll~lFFi~vGm~id~  284 (601)
T PRK03659        232 MDALGLSMALGTFIAGVLLAESE-------YRHELEIAIEPFKGLLLGLFFISVGMALNL  284 (601)
T ss_pred             HHHhCccHHHHHHHHHHHhcCCc-------hHHHHHHHHHHHHHHHHHHHHHHHhhhccH
Confidence            99999999999999999999632       222333344445568889999999999954

>PLN03159 cation/H(+) antiporter 15; Provisional

Probab=99.91  E-value=1.9e-22  Score=211.46  Aligned_cols=285  Identities=12%  Similarity=0.096  Sum_probs=188.3

Q ss_pred             HHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCcccccc----ChhHHHHHhhHHHhhHhhhcCChHHHH
Q 018715           32 LLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMF----SEDLFFIYLLPPIIFNAGFQVKKKQFF  107 (351)
Q Consensus        32 lL~~~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~----~~~~~~~i~L~~ilF~aGl~l~~~~l~  107 (351)
                      +++++.+++.++ ||.++|.+++++++|+++||......+......+..    .-+.+.++++.+++|.+|+|+|.+.+|
T Consensus        51 il~~a~l~~~ll-~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp~~~~~~l~~la~lGlillmFliGLE~Dl~~lr  129 (832)
T PLN03159         51 VVVTTRLLVFIL-KPFRQPRVISEILGGVILGPSVLGQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDISVIR  129 (832)
T ss_pred             HHHHHHHHHHHH-HhcCCChhHHHHHHHHhcCHhhhCcChhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence            344444554444 568999999999999999997653322111111111    124588999999999999999999999


Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhhccccHHHHHHHhcccCC--chhHHHHHHHhh
Q 018715          108 RNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDET--PLLYSLVFGEGV  185 (351)
Q Consensus       108 ~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~~v~~il~~~~~--~~l~~~l~gEs~  185 (351)
                      |++++.+..+..++++++.+.....++ +............++++|.++|.|+..++.++++|.|.  ++.+++..+.++
T Consensus       130 ~~~k~a~~ia~~~~ilpf~lg~~~~~~-l~~~~~~~~~~~~~l~~g~alS~Ts~pVv~riL~Elkll~s~~GrlaLsaav  208 (832)
T PLN03159        130 RTGKKALAIAIAGMALPFCIGLAFSFI-FHQVSRNVHQGTFILFLGVALSVTAFPVLARILAEIKLINTELGRIAMSAAL  208 (832)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHH-HhhcccccchhHHHHHHHHHHHHhhHHHHHHHHHHcCcccCcHHHHHHHHHH
Confidence            999999999999999987555444333 32211001123446889999999999999999999984  479999999999


Q ss_pred             hhhHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHH
Q 018715          186 VNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSY  265 (351)
Q Consensus       186 lnD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~~~G~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~  265 (351)
                      +||..+++++.++..+...+......   +...+..++..++..++.-....|+.|+....++.++....+++..++++.
T Consensus       209 v~Dl~~~ilLav~~~l~~~~~~~~~~---l~~~l~~~~f~~~~~~v~r~~~~~~~r~~~~~~~~~e~~v~~il~~vl~~a  285 (832)
T PLN03159        209 VNDMCAWILLALAIALAENDSTSLAS---LWVLLSSVAFVLFCFYVVRPGIWWIIRRTPEGETFSEFYICLILTGVMISG  285 (832)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcchhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCcccchhHHHHHHHHHHH
Confidence            99999999988776664432211111   111111111111222222233344444432111223344567777788899


Q ss_pred             HHHHhhccchHHHHHHHHHhhhcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 018715          266 MLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALD  327 (351)
Q Consensus       266 ~~ae~lg~Sgilav~~~Gl~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Fv~iG~~i~~  327 (351)
                      +++|.+|.|.++|+|++|+++.+.+      ..+...+++-.....++.+++|+.+|++++.
T Consensus       286 ~lae~~Gl~~ilGAFlaGl~lp~~~------~~~~l~ekle~~~~~lflPlFFv~vGl~idl  341 (832)
T PLN03159        286 FITDAIGTHSVFGAFVFGLVIPNGP------LGVTLIEKLEDFVSGLLLPLFFAISGLKTNV  341 (832)
T ss_pred             HHHHHhCccHHHHHHHHhhccCCcc------hHHHHHHHHHHHHHHHHHHHHHHHhhheeeH
Confidence            9999999999999999999998421      1112222333334568999999999999853

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=99.91  E-value=4.4e-22  Score=202.11  Aligned_cols=276  Identities=13%  Similarity=0.131  Sum_probs=182.6

Q ss_pred             HHHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCChHHHHHhh
Q 018715           31 ALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNF  110 (351)
Q Consensus        31 ~lL~~~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~~~~l~~~~  110 (351)
                      .++..+.+.++ +.||.++|.+++++++|+++||......+  ..    ...+.+.++++.+++|.+|+|+|++++||.+
T Consensus        13 ~~l~~a~~~~~-l~~rl~~P~ivg~IlaGillGp~~lg~~~--~~----~~~~~la~lGli~llF~~Gle~d~~~l~~~~   85 (558)
T PRK10669         13 GGLVLAFILGM-LANRLRISPLVGYLLAGVLAGPFTPGFVA--DT----KLAPELAELGVILLMFGVGLHFSLKDLMAVK   85 (558)
T ss_pred             HHHHHHHHHHH-HHHHcCCCHHHHHHHHHHhhCcccccccc--ch----HHHHHHHHHHHHHHHHHhHhcCCHHHHHHHh
Confidence            34444545544 44558999999999999999985432211  11    1124588999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhhccccHHHHHHHhcccCC--chhHHHHHHHhhhhh
Q 018715          111 MTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDET--PLLYSLVFGEGVVND  188 (351)
Q Consensus       111 ~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~~v~~il~~~~~--~~l~~~l~gEs~lnD  188 (351)
                      +.....+..+++.++. .+...++.+      ++++..++++|++++.|+++++.++++|.+.  ++.+++..+.+.+||
T Consensus        86 ~~~~~~~~~~~~~~~~-~~~~~~~~~------~~~~~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~~l~~~~~~D  158 (558)
T PRK10669         86 SIAIPGAIAQIAVATL-LGMALSAVL------GWSLMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIAIGWLIVED  158 (558)
T ss_pred             hHHHHHHHHHHHHHHH-HHHHHHHHh------CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHHHHHHHHHHH
Confidence            7776666667666654 444445555      8999999999999999999999999999883  369999999999999


Q ss_pred             HHHHHHHHHHHHhhh----hccchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHH
Q 018715          189 ATSVVLFNAIQSFDL----SHINLSIA-LKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYL  263 (351)
Q Consensus       189 ~~aivlf~~~~~~~~----~~~~~~~~-~~~~~~~l~~~~~~~~~G~~~G~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~  263 (351)
                      ..+++.+.++..+..    +..+.... ..............+...++..+...++.++... ++.++......+..+++
T Consensus       159 l~~i~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~e~~~l~~l~~~l~  237 (558)
T PRK10669        159 LVMVLTLVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAA-TGSRELFTLSVLALALG  237 (558)
T ss_pred             HHHHHHHHHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchHHHHHHHHHHHH
Confidence            999888876654432    11111111 1111111111122222333334455555555432 22333334444555555


Q ss_pred             HH-HHHHhhccchHHHHHHHHHhhhcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 018715          264 SY-MLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDI  328 (351)
Q Consensus       264 ~~-~~ae~lg~Sgilav~~~Gl~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Fv~iG~~i~~~  328 (351)
                      .. ..+|.+|+|..+|+|++|+++++.+.       +++.++....+..++.++||+.+|++++..
T Consensus       238 ~a~~~~~~lGls~~lGAflaGl~l~~~~~-------~~~~~~~~~~~~~~f~plFFv~~G~~~d~~  296 (558)
T PRK10669        238 IAFGAVELFDVSFALGAFFAGMVLNESEL-------SHRAAHDTLPLRDAFAVLFFVSVGMLFDPM  296 (558)
T ss_pred             HHHHHHHHcCccHHHHHHHHHHHHhCChh-------HHHHHHHHhhHHHHHHHHHHHHhhhhcCHH
Confidence            44 45699999999999999999985321       111222222345678999999999999654

>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]

Probab=99.64  E-value=1.8e-14  Score=129.96  Aligned_cols=282  Identities=16%  Similarity=0.210  Sum_probs=177.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcC
Q 018715           22 SVVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQV  101 (351)
Q Consensus        22 ~~~~l~~~i~lL~~~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l  101 (351)
                      +..-+...+..+..+.++|.+..| .|+|+.++|++.|++.||..    ++...+ .+.. +.+.++++..+||..|++.
T Consensus         4 ~tpli~tiv~gl~lAFl~G~lA~r-lrlsPLVGyL~AGv~~gpft----pGFvad-~~La-~~LAelGViLLmFgvGLhf   76 (408)
T COG4651           4 DTPLITTIVGGLVLAFLLGALANR-LRLSPLVGYLLAGVLAGPFT----PGFVAD-QTLA-PELAELGVILLMFGVGLHF   76 (408)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHh-cCCCchHHHHHHHHhcCCCC----CCcccc-hhHH-HHHHHhhHHHHHHhcchhe
Confidence            344444555667777777777665 89999999999999999853    332211 1222 2478999999999999999


Q ss_pred             ChHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHhhcccCCCCHHHHHHHhhhhccccHHHHHHHhcccCC--chh
Q 018715          102 KKKQFFRNFMTIMLFGAVGTLISFV---IISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDET--PLL  176 (351)
Q Consensus       102 ~~~~l~~~~~~i~~la~~g~~~~~~---~~~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~~v~~il~~~~~--~~l  176 (351)
                      +.+++...+.    ++++|.+....   ..+...-+.+      +|++...+.+|-++|-.|.++..+-++|++.  ++-
T Consensus        77 slkdLLavk~----iAipgAl~qia~at~lg~gL~~~l------gws~~~glvfGlaLS~aSTVvllraLqEr~lidt~r  146 (408)
T COG4651          77 SLKDLLAVKA----IAIPGALAQIALATLLGMGLSSLL------GWSFGTGIVFGLALSVASTVVLLRALEERQLIDTQR  146 (408)
T ss_pred             eHHHHhhHHH----HhcchHHHHHHHHHHHHhHHHHHc------CCCcccceeeeehhhhHHHHHHHHHHHHhccccccC
Confidence            9999876554    33444443322   2233333444      9999999999999999999999999998872  245


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHH---HHhhh-hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhccCCCc
Q 018715          177 YSLVFGEGVVNDATSVVLFNAI---QSFDL-SHINLSIALKFVGSFFYLFIASTMLGVIAGLLS-AFIIKKLYMGRHSTD  251 (351)
Q Consensus       177 ~~~l~gEs~lnD~~aivlf~~~---~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~G~~~G~~~-~~l~~~~~~~~~~~~  251 (351)
                      +++-.|=-+..|...++.....   .+... ++....+....+...+.+...-+.++.++|.-. .|...+...+ -.++
T Consensus       147 G~iAiGwLiveDl~mVl~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~t-GsrE  225 (408)
T COG4651         147 GRIAIGWLIVEDLAMVLALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAAT-GSRE  225 (408)
T ss_pred             ceEEEeehhHHHHHHHHHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHH
Confidence            6666677777885555433322   22221 111111122223333444455556666666544 4445554321 1122


Q ss_pred             hhHHHHHHHHHH-HHHHHHhhccchHHHHHHHHHhhhcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 018715          252 REVALMILMAYL-SYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDI  328 (351)
Q Consensus       252 ~~~~l~l~~~~~-~~~~ae~lg~Sgilav~~~Gl~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Fv~iG~~i~~~  328 (351)
                      .....++.+++. +|+.+|.+|.|.-+++|++|++++..+   .+++..+.    .-.+...+..+||+-+||..+|+
T Consensus       226 lf~L~vla~ALgVa~Ga~~LfgvsfaLGAffaGMvL~ese---lshraa~~----slpLrdaFaVlFFvsVGmlf~P~  296 (408)
T COG4651         226 LFTLAVLAIALGVAFGAAELFGVSFALGAFFAGMVLAESE---LSHRAAED----SLPLRDAFAVLFFVSVGMLFDPM  296 (408)
T ss_pred             HHHHHHHHHHHHHhhccceeeccchhHHHHHHHHHhcchh---hhHHHHHh----ccCHHHHHHHHHHHHhhhhcCcH
Confidence            223344555544 455667899999999999999999322   22221111    12345588899999999999875

>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]

Probab=99.21  E-value=1.7e-10  Score=120.32  Aligned_cols=293  Identities=16%  Similarity=0.122  Sum_probs=183.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccCh----hHHHHHhhHHHhhHhhhcCC
Q 018715           27 NLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSE----DLFFIYLLPPIIFNAGFQVK  102 (351)
Q Consensus        27 ~~~i~lL~~~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~----~~~~~i~L~~ilF~aGl~l~  102 (351)
                      .+.+.++....-+.+++.|+.++|..+..++.|+++||..+.-.+......+..+.    +.+..++....+|..|+++|
T Consensus        25 ~lq~~~i~~~~~~~~~~l~pl~qp~~~s~il~Gi~lgps~~g~~~~~~~~~f~~~s~~~l~~~~~lg~~~f~Fl~gl~~d  104 (769)
T KOG1650|consen   25 LLQIILIIVLSRLLHILLKPLGQPRVISEILAGIILGPSLLGRIPSYMNTIFPKSSMIVLELLANLGFLFFLFLMGLEID  104 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhcchHhhccChhhhhcccccchHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            33344444444455666677999999999999999999876433222111122111    44678888999999999999


Q ss_pred             hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCC----HHHHHHHhhhhccccHHHHHHHhcccCC--chh
Q 018715          103 KKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLK----IGDYLAIGAIFAATDSVCTLQVLNQDET--PLL  176 (351)
Q Consensus       103 ~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~----~~~alllgailsaTdp~~v~~il~~~~~--~~l  176 (351)
                      .+.+||+.++...++..++++++...................+    ...=.......+.|+=.++..++.|.+.  +++
T Consensus       105 ~~~i~~~~kka~~I~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~tsfpv~~~iL~eLkll~se~  184 (769)
T KOG1650|consen  105 LRVIRRTGKKAIVIAIASVVLPFGLGFGLAFLLSDTKADKEDGALFLPFEILFILSAQSITSFPVLARILAELKLLNSEL  184 (769)
T ss_pred             HHHhhccCceeEEEEEEEeehhhHhhhhhhhhccccccccccccccccHHHHHHHHHhhcchhHHHHHHHHHhhchhchh
Confidence            9999999999998888888888644333322221111111111    1133556688899999999999999883  479


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHH
Q 018715          177 YSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKLYMGRHSTDREVAL  256 (351)
Q Consensus       177 ~~~l~gEs~lnD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~~~G~~~~~l~~~~~~~~~~~~~~~~l  256 (351)
                      +++...++.+||..++.++.....+.......  ............+..+..=.++=....|+.|+...+++..+.....
T Consensus       185 Grla~saa~v~dv~~~~ll~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~v~~p~~~wi~kr~pe~~~~~~~~~~~  262 (769)
T KOG1650|consen  185 GRLALSAAVVNDVAGWILLALALAFSSELKLS--PLRSVWDLVLVIGFVLFLFFVVRPLMKWIIKRTPEGKPVSDAYICV  262 (769)
T ss_pred             hhhhhhhhhhhhHHHHHHHHHHHHHhccCCCc--chHHHHHHHHHHHHHHheeeehhhhHHHHhhcCCCCCccccceehh
Confidence            99999999999999998888776665433210  0001111111111111111112223333334321111123344566


Q ss_pred             HHHHHHHHHHHHHhhc-cchHHHHHHHHHhhhcccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 018715          257 MILMAYLSYMLAELFY-LSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDAL  326 (351)
Q Consensus       257 ~l~~~~~~~~~ae~lg-~Sgilav~~~Gl~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Fv~iG~~i~  326 (351)
                      .+...+.+....+.++ .+++.++++.|+.+-+..+-     .+...+++-+....++-++.|...|...+
T Consensus       263 ~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~p~-----g~~L~ekle~~~~~~llPl~~~~~G~k~d  328 (769)
T KOG1650|consen  263 TLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGPPL-----GSALIEKLEDLVSGLLLPLYFAISGLKTD  328 (769)
T ss_pred             hHHHHHHHHHHHHHhccccccchhheEEEecCCCCch-----hHHHHHHHHHHHHHHHHHHHHHhhcccee
Confidence            7777888888888876 88899999999999865431     11222223333445888999999998874

>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional

Probab=98.60  E-value=1e-05  Score=78.54  Aligned_cols=208  Identities=17%  Similarity=0.135  Sum_probs=125.9

Q ss_pred             HHHHHhhHHHhhHhhhcCC-------hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhh
Q 018715           84 LFFIYLLPPIIFNAGFQVK-------KKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIF  156 (351)
Q Consensus        84 ~~~~i~L~~ilF~aGl~l~-------~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgail  156 (351)
                      ++-+....+..|..|+|++       ++..||...+ ..-++.|++.++     ..|+.+      +..-....-=-++-
T Consensus        65 wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP-~~aAlGGm~vPa-----liy~~~------n~~~~~~~~GW~Ip  132 (423)
T PRK14853         65 WAADGLLAIFFFVVGLELKREFVAGDLRDPSRAALP-VAAALGGMIVPA-----LIYVAV------NLAGGGALRGWAIP  132 (423)
T ss_pred             HHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHH-HHHHHHhHHHHH-----HHHHHH------hCCchhhhhhhhhh
Confidence            4556666667788999995       4454555444 344667777765     234444      22212212222677


Q ss_pred             ccccHHHHHHHhcccC--Cc-hhHHHHHHHhhhhhHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018715          157 AATDSVCTLQVLNQDE--TP-LLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAG  233 (351)
Q Consensus       157 saTdp~~v~~il~~~~--~~-~l~~~l~gEs~lnD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~~~G  233 (351)
                      ++||.+.++.++...+  .| +++..+.+-+++||..++++..++.   .++.+   +....       ...   +   .
T Consensus       133 ~ATDIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfY---t~~i~---~~~L~-------~a~---~---~  193 (423)
T PRK14853        133 TATDIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFY---TSELN---LEALL-------LAL---V---P  193 (423)
T ss_pred             hhhHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhhecc---CCCCC---HHHHH-------HHH---H---H
Confidence            8999999999998765  46 6999999999999999998877765   22222   11110       000   0   1


Q ss_pred             HHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhcccccCC-C----hhHHHHHHHHHHH
Q 018715          234 LLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNV-T----ESSRVTTKHAFAT  308 (351)
Q Consensus       234 ~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~ae~lg~Sgilav~~~Gl~l~~~~~~~~-~----~~~~~~~~~~~~~  308 (351)
                      ....+.+++.    +.++  ....+......++..+..|.++.+|.++.|+++-..++.+. +    ++-.++.++..+.
T Consensus       194 ~~~l~~l~~~----~V~~--~~~Y~ilg~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~L~p  267 (423)
T PRK14853        194 LALFWLLVQK----RVRK--WWLLLPLGVATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHRLRP  267 (423)
T ss_pred             HHHHHHHHHc----CCch--hhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHHHHHHH
Confidence            1112223322    2222  22223335577888899999999999999999953221110 0    1112344444544


Q ss_pred             -HHHHHHHHH-HHHhhhhhccc
Q 018715          309 -LSFVAEIFI-FLYVGMDALDI  328 (351)
Q Consensus       309 -~~~l~~~~~-Fv~iG~~i~~~  328 (351)
                       ..++.-++| |.-.|.+++..
T Consensus       268 ~V~~~ILPLFAFANaGV~l~~~  289 (423)
T PRK14853        268 LSAGVAVPVFAFFSAGVAIGGL  289 (423)
T ss_pred             HHHHHHHHHHHHHHhhheecCc
Confidence             457888999 99999999653

>TIGR00773 NhaA Na+/H+ antiporter NhaA

Probab=97.65  E-value=0.0018  Score=62.04  Aligned_cols=201  Identities=13%  Similarity=0.159  Sum_probs=119.5

Q ss_pred             HHHHHhhHHHhhHhhhcCChHHHH-------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc----CCCCHHHHHHH
Q 018715           84 LFFIYLLPPIIFNAGFQVKKKQFF-------RNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNI----GTLKIGDYLAI  152 (351)
Q Consensus        84 ~~~~i~L~~ilF~aGl~l~~~~l~-------~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~----~~~~~~~alll  152 (351)
                      +.-+....+..|..|+|++++...       |..-+ ..-++.|++.++     ..|..++. +.    +||        
T Consensus        55 wiNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP-~~aA~GGm~vPa-----~iy~~~n~-~~~~~~~GW--------  119 (373)
T TIGR00773        55 WINDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFP-VIAAIGGMIAPA-----LIYLAFNA-NDPITREGW--------  119 (373)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHH-HHHHHhchHHHH-----HHHhheec-CCCcccCcc--------
Confidence            344566666678889998866542       22222 233555666654     23444421 11    122        


Q ss_pred             hhhhccccHHHHHHHhccc--CCc-hhHHHHHHHhhhhhHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHH
Q 018715          153 GAIFAATDSVCTLQVLNQD--ETP-LLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLG  229 (351)
Q Consensus       153 gailsaTdp~~v~~il~~~--~~~-~l~~~l~gEs~lnD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G  229 (351)
                       ++=.+||.+-...++.-.  |.| .++..+..-++.||..+++.-.++.   .++.+   +...       .      .
T Consensus       120 -~IP~ATDiAFalgvlallG~~vP~~lr~FLl~LAIvDDlgaI~vIA~FY---t~~i~---~~~L-------~------~  179 (373)
T TIGR00773       120 -AIPAATDIAFALGVMALLGKRVPLALKIFLLALAIIDDLGAIVIIALFY---TNDLS---MAAL-------L------V  179 (373)
T ss_pred             -ccccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHhheeeec---CCCCC---HHHH-------H------H
Confidence             456789999999987744  466 5899999999999999987766553   22322   1111       1      1


Q ss_pred             HHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhcccccCCChhHHHHHHHHHHHH
Q 018715          230 VIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATL  309 (351)
Q Consensus       230 ~~~G~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~ae~lg~Sgilav~~~Gl~l~~~~~~~~~~~~~~~~~~~~~~~  309 (351)
                      ...+....+.++|.    +.++  ....+......++..+..|.++.+|.++.|+++-++.+.+  ++-.++.++..+..
T Consensus       180 a~~~~~~l~~~~~~----~v~~--~~~y~~lgvllW~~~~~sGVHatiaGvllGl~iP~~~~~~--~~pl~rleh~L~p~  251 (373)
T TIGR00773       180 AAVAIAVLAVLNRC----GVRR--LGPYMLVGVILWFAVLKSGVHATLAGVIIGFFIPLKGKKG--ESPLKRLEHVLHPW  251 (373)
T ss_pred             HHHHHHHHHHHHHc----CCch--hhHHHHHHHHHHHHHHHcCCcHHHHHHHHeeeecccccCC--CCHHHHHHHHHHHH
Confidence            11112233444443    1222  2222223334444447899999999999999998643222  22234566666555


Q ss_pred             H-HHHHHHH-HHHhhhhhcc
Q 018715          310 S-FVAEIFI-FLYVGMDALD  327 (351)
Q Consensus       310 ~-~l~~~~~-Fv~iG~~i~~  327 (351)
                      . ++.-++| |.-.|.+++.
T Consensus       252 v~~lilPlFAFanAGv~l~~  271 (373)
T TIGR00773       252 VAYLILPLFAFANAGVSLQG  271 (373)
T ss_pred             HHHHHHHHHHHHhcCeeeec
Confidence            5 6777999 9999999954

These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.

>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)

Probab=97.15  E-value=0.2  Score=47.35  Aligned_cols=150  Identities=12%  Similarity=0.100  Sum_probs=70.3

Q ss_pred             ccChhHHHHHhhHHHhhHhhhcCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhhcc
Q 018715           79 MFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAA  158 (351)
Q Consensus        79 ~~~~~~~~~i~L~~ilF~aGl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgailsa  158 (351)
                      ..++|....+++..+.|..|++++.+++++..+..-... .+...++.+.....+.+....   +......+..|-.+.+
T Consensus        26 ~~~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l-~~~~~~fvl~Pll~~~~~~l~---~~~~~~~l~~Gl~~~~  101 (313)
T PF13593_consen   26 VIKPEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHL-FVQAFNFVLFPLLGFGLSRLF---PAFLPPELALGLLILA  101 (313)
T ss_pred             ccchhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHH-HHHHHHHHHHHHHHHHHHHHh---hccCCHHHHHHHHHHh
Confidence            344456778888899999999999999988765532211 122233333332222221111   1111222444433333


Q ss_pred             ccHHH---HHHHhccc-CCchhHHHHHHHhhhhhHHHHHHHHHHHHhhh-hccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018715          159 TDSVC---TLQVLNQD-ETPLLYSLVFGEGVVNDATSVVLFNAIQSFDL-SHINLSIALKFVGSFFYLFIASTMLGVIAG  233 (351)
Q Consensus       159 Tdp~~---v~~il~~~-~~~~l~~~l~gEs~lnD~~aivlf~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~G~~~G  233 (351)
                      .=|..   .+..-+.. |+..   .-..++.++...++++.=....... ++..+.+..+.+.+....++.-.++|-..-
T Consensus       102 ~lPtTv~S~v~~T~~AgGN~a---~Al~~~~~snllgv~ltP~ll~l~l~~~~~~~~~~~~~~~L~~~vllP~~~Gq~~r  178 (313)
T PF13593_consen  102 CLPTTVSSSVVLTRLAGGNVA---LALFNAVLSNLLGVFLTPLLLLLLLGGSSVSIDYASVLIKLVLTVLLPLVLGQLLR  178 (313)
T ss_pred             hCCchhhHHHHHHHHcCCCHH---HHHHHHHHHhhhhHhHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33322   22222322 2321   1223566677788877665555443 222222333444444444444444444433


Q ss_pred             HH
Q 018715          234 LL  235 (351)
Q Consensus       234 ~~  235 (351)
                      ..
T Consensus       179 ~~  180 (313)
T PF13593_consen  179 RW  180 (313)
T ss_pred             HH
Confidence            33

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins

Probab=96.61  E-value=0.65  Score=43.74  Aligned_cols=140  Identities=14%  Similarity=0.142  Sum_probs=80.8

Q ss_pred             ccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCChHHHHHhhHHHHHHHHHHHHHHHH
Q 018715           47 RWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFV  126 (351)
Q Consensus        47 ~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~~~~l~~~~~~i~~la~~g~~~~~~  126 (351)
                      ..+++....+++|+++|......+ .....-.++..+.+.++++    -.-|.+++.+++.+.+.+.+......+..+..
T Consensus        24 ~~l~~~~~AillG~~i~n~~~~~~-~~~~~Gi~~~~k~~Lr~gI----VLlG~~l~~~~i~~~G~~~~~~~~~~v~~~~~   98 (305)
T PF03601_consen   24 PGLGALLIAILLGMLIGNLFFGLP-ARFKPGIKFSSKKLLRLGI----VLLGFRLSFSDILALGWKGLLIIIIVVILTFL   98 (305)
T ss_pred             cCccHHHHHHHHHHHHhhhccCCc-HHHHhHHHHHHHHHHHHHH----HHHCccccHHHHHHhCccHHHHHHHHHHHHHH
Confidence            567777777888888874111111 1111112333345666655    44588999999999999877777777666654


Q ss_pred             HHHHHHHHHHhhcccCCCCHHHHHHHh---hhhccccHHHHHHHhcccCCchhHHHHHHHhhhhhHHHHHHHHHHH
Q 018715          127 IISAGAVHFFKQMNIGTLKIGDYLAIG---AIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQ  199 (351)
Q Consensus       127 ~~~~~~~~~l~~~~~~~~~~~~alllg---ailsaTdp~~v~~il~~~~~~~l~~~l~gEs~lnD~~aivlf~~~~  199 (351)
                      ...+...-.+      +++...+.++|   +|..++..+++.++.|..+. +....+-.-.++| .+++.+|-.+.
T Consensus        99 ~~~~lg~r~~------~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a~~~-~~a~ava~V~lfg-~vam~~~P~l~  166 (305)
T PF03601_consen   99 LTYWLGRRLF------GLDRKLAILIAAGTSICGASAIAATAPVIKAKEE-DVAYAVATVFLFG-TVAMFLYPLLG  166 (305)
T ss_pred             HHHHHHHHHh------CCCHHHHHHHHhhcccchHHHHHHHcccccCCCC-ceeeeehHHHHHH-HHHHHHHHHHH
Confidence            4443431233      78888888888   55566666666666664332 2222233333444 35555554443

; GO: 0016021 integral to membrane

>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH

Probab=96.41  E-value=0.095  Score=50.39  Aligned_cols=208  Identities=18%  Similarity=0.202  Sum_probs=105.5

Q ss_pred             hHHHHHhhHHHhhHhhhcCChHHHH----HhhHH--HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHh-hh
Q 018715           83 DLFFIYLLPPIIFNAGFQVKKKQFF----RNFMT--IMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIG-AI  155 (351)
Q Consensus        83 ~~~~~i~L~~ilF~aGl~l~~~~l~----~~~~~--i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllg-ai  155 (351)
                      +++-+....+..|..|+|++++...    +.++.  -..-++.|++.++     ..|..++      .+-.. -.=| ++
T Consensus        57 ~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPa-----lIyl~~n------~~~~~-~~~GW~I  124 (378)
T PF06965_consen   57 HWINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPA-----LIYLAFN------AGGPE-AAHGWAI  124 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTH-----HHHGGG--------SSTT-HHHHTSS
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHH-----HHHheee------cCCCC-cCceEEe
Confidence            3455677777788899998866442    11111  2233555666553     2344442      21111 1122 67


Q ss_pred             hccccHHHHHHHhccc--CCc-hhHHHHHHHhhhhhHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 018715          156 FAATDSVCTLQVLNQD--ETP-LLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIA  232 (351)
Q Consensus       156 lsaTdp~~v~~il~~~--~~~-~l~~~l~gEs~lnD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~~~  232 (351)
                      =++||.+-...++.-.  +.| .++..+..-++.||..+++.-.++.+   ++.+   +.       +.......     
T Consensus       125 P~ATDIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt---~~i~---~~-------~L~~a~~~-----  186 (378)
T PF06965_consen  125 PMATDIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFYT---DGIS---LL-------WLLLAAAA-----  186 (378)
T ss_dssp             SS---HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS-----------HH-------HHHHHHHH-----
T ss_pred             cccccHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeeeC---CCCC---HH-------HHHHHHHH-----
Confidence            7999999999998744  466 58999999999999999987776642   2222   11       11111111     


Q ss_pred             HHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhcccccCC--ChhHHHHHHHHHHHHH
Q 018715          233 GLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNV--TESSRVTTKHAFATLS  310 (351)
Q Consensus       233 G~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~ae~lg~Sgilav~~~Gl~l~~~~~~~~--~~~~~~~~~~~~~~~~  310 (351)
                       ....+.++|.+    .+..  ..........++.-..-|.++-+|.+..|+.+-.+++.+.  .++.-++.++..+...
T Consensus       187 -~~~l~~l~r~~----v~~~--~~Y~~~G~~lW~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p~v  259 (378)
T PF06965_consen  187 -LLLLFVLNRLG----VRSL--WPYLLLGILLWYAVLKSGVHATIAGVLLALFIPARPRAGEREAESPLERLEHALHPWV  259 (378)
T ss_dssp             -HHHHHHHHHTT-------T--HHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHS---GGGS----S-HHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHCC----Ccee--hHHHHHHHHHHHHHHHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHHhhhhh
Confidence             22223344432    1111  2223334455665566788999999999999987665421  1122345555665554


Q ss_pred             HHHHHHHHHH--hhhhhcc
Q 018715          311 FVAEIFIFLY--VGMDALD  327 (351)
Q Consensus       311 ~l~~~~~Fv~--iG~~i~~  327 (351)
                      ...-.-+|.+  .|..+..
T Consensus       260 ~~~IlPlFAlaNAGV~l~~  278 (378)
T PF06965_consen  260 AFVILPLFALANAGVSLSG  278 (378)
T ss_dssp             HHTHHHHHHHHHS----SS
T ss_pred             hhhhHHhHhheeCceEEec
Confidence            4444444444  4555544

NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.

>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed

Probab=96.33  E-value=0.11  Score=50.14  Aligned_cols=202  Identities=15%  Similarity=0.189  Sum_probs=114.7

Q ss_pred             hHHHHHhhHHHhhHhhhcCChHHH-------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc----CCCCHHHHHH
Q 018715           83 DLFFIYLLPPIIFNAGFQVKKKQF-------FRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNI----GTLKIGDYLA  151 (351)
Q Consensus        83 ~~~~~i~L~~ilF~aGl~l~~~~l-------~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~----~~~~~~~all  151 (351)
                      ++.-+....+..|..|+|++++..       ||..-++ .-++.|++.++     ..|+.++. +.    .||       
T Consensus        61 ~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi-~AAlGGmivPA-----lIy~~~n~-g~~~~~~GW-------  126 (389)
T PRK09560         61 HWINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPA-IAAVGGMVVPA-----LIYAAFNY-NNPETLRGW-------  126 (389)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHH-HHHHhchHHHH-----HHHheeec-CCCcccCcc-------
Confidence            345566666777889999886544       3322222 33556666664     23444421 11    122       


Q ss_pred             HhhhhccccHHHHHHHhccc--CCc-hhHHHHHHHhhhhhHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHH
Q 018715          152 IGAIFAATDSVCTLQVLNQD--ETP-LLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTML  228 (351)
Q Consensus       152 lgailsaTdp~~v~~il~~~--~~~-~l~~~l~gEs~lnD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  228 (351)
                        ++=.+||.+-...++.-.  +.| .++.-+..-++.||..+++.-.++.   .++.+   +...       ....   
T Consensus       127 --gIPmATDIAFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FY---t~~i~---~~~L-------~~a~---  188 (389)
T PRK09560        127 --AIPAATDIAFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALFY---TSDLS---LPAL-------ALAA---  188 (389)
T ss_pred             --ccccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeec---CCCCC---HHHH-------HHHH---
Confidence              455789999999998754  466 5899999999999999987766553   22222   1111       1111   


Q ss_pred             HHHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhcccccCCChhHHHHHHHHHHH
Q 018715          229 GVIAGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFAT  308 (351)
Q Consensus       229 G~~~G~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~ae~lg~Sgilav~~~Gl~l~~~~~~~~~~~~~~~~~~~~~~  308 (351)
                         .+....+.++|..    .  .....-+......++.-..-|.++-+|.++.|+.+-.+.+.+..++--++.+|..+.
T Consensus       189 ---~~~~~l~~ln~~~----v--~~~~~Y~~~G~~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~L~p  259 (389)
T PRK09560        189 ---IAIAVLFLLNRLG----V--TKLTPYLIVGAILWFAVLKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHALHP  259 (389)
T ss_pred             ---HHHHHHHHHHHcC----C--ccchHHHHHHHHHHHHHHHccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHHhhh
Confidence               1122233344432    1  112223334556666666779999999999999997633222111112455566665


Q ss_pred             HHHHHHHHHHHHh--hhhh
Q 018715          309 LSFVAEIFIFLYV--GMDA  325 (351)
Q Consensus       309 ~~~l~~~~~Fv~i--G~~i  325 (351)
                      .....-.-+|.+.  |..+
T Consensus       260 ~v~~~IlPlFAlaNAGV~l  278 (389)
T PRK09560        260 WVAFAILPLFAFANAGVSL  278 (389)
T ss_pred             hhhhhhHHHHHhhcCCeee
Confidence            5555555555554  4444

>COG2855 Predicted membrane protein [Function unknown]

Probab=96.02  E-value=0.13  Score=48.47  Aligned_cols=140  Identities=14%  Similarity=0.115  Sum_probs=86.4

Q ss_pred             cccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCChHHHHHhhHHHHHHHHHHHHHHH
Q 018715           46 NRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISF  125 (351)
Q Consensus        46 ~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~~~~l~~~~~~i~~la~~g~~~~~  125 (351)
                      +.++|..+..++.|+++|....  .+.....-.++..+.+.++++..    -|++++++++.+.+.+.+......+..+ 
T Consensus        34 ~~~l~al~lAIllGi~l~~l~~--~~~~~~~GI~fs~k~LLr~gIvL----lG~~ltl~~i~~~G~~~v~~~~~~l~~t-  106 (334)
T COG2855          34 HLGLSALTLAILLGILLGILPQ--IPAQTSAGITFSSKKLLRLGIVL----LGFRLTLSDIADVGGSGVLIIAITLSST-  106 (334)
T ss_pred             hcCchHHHHHHHHHHHHhcccc--chhhhccchhhhHHHHHHHHHHH----HcceeeHHHHHHcCccHHHHHHHHHHHH-
Confidence            4568888889999999983211  11111222566667777877643    4899999999999888776555444444 


Q ss_pred             HHHHHHHHHHHhhcccCCCCHHHHHHHh---hhhccccHHHHHHHhcccCCchhHHHHHHHhhhhhHHHHHHHHHHHH
Q 018715          126 VIISAGAVHFFKQMNIGTLKIGDYLAIG---AIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQS  200 (351)
Q Consensus       126 ~~~~~~~~~~l~~~~~~~~~~~~alllg---ailsaTdp~~v~~il~~~~~~~l~~~l~gEs~lnD~~aivlf~~~~~  200 (351)
                      +..+..+.-++      ++++..+++.|   +|..+...+++.|+.|... ++...-+..-.+++. ++..+|-.+..
T Consensus       107 ~~~~~~lg~~l------gld~~~a~Lia~GssICGasAiaA~~pvika~~-~eva~aIa~V~lfgt-ia~llyP~l~~  176 (334)
T COG2855         107 FLFAYFLGKLL------GLDKKLALLIAAGSSICGASAIAATAPVIKAEE-EEVAVAIAVVVLFGT-LAMLLYPLLYP  176 (334)
T ss_pred             HHHHHHHHHHh------CCCHHHHHHHHccchhhHHHHHHHhCCcCCCCc-cccceehhhHHHHHH-HHHHHHHHHHH
Confidence            33333333344      89999999998   5666666666666666322 234444444555554 45555544433

>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]

Probab=95.94  E-value=1.7  Score=41.90  Aligned_cols=78  Identities=15%  Similarity=0.168  Sum_probs=43.4

Q ss_pred             HHHHHHHhh------cccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhH-hhhcCChHHHHHh
Q 018715           37 IVIGHLLEE------NRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFN-AGFQVKKKQFFRN  109 (351)
Q Consensus        37 ~~~~~~l~~------~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~-aGl~l~~~~l~~~  109 (351)
                      .++|+.++|      |..+|+++.-=++..++++....... .   ..++|.+ +-+. +..+.|. .|+..|.+.+||-
T Consensus        18 lllG~~l~kki~fl~k~~IPepVvgG~i~ail~~~~~~~~~-~---~~~fd~~-l~~~-fmliFFttiglsa~~~~lkkg   91 (404)
T COG0786          18 LLLGRFLVKKIKFLKKYCIPEPVVGGLIFAILLLLLHGFGG-V---SLNFDTS-LQDV-FMLIFFATIGLSASFKLLKKG   91 (404)
T ss_pred             HHHHHHHHHHhHHHHHccCCcchHHHHHHHHHHHHHHhcce-E---EEeCCcc-cccH-HHHHHHHHhccccchhHHHhc
Confidence            356666664      45699887655555566655442211 1   1222220 1111 2233344 5999999999999


Q ss_pred             hHHHHHHHHHH
Q 018715          110 FMTIMLFGAVG  120 (351)
Q Consensus       110 ~~~i~~la~~g  120 (351)
                      +|+....-...
T Consensus        92 Gk~l~if~~~a  102 (404)
T COG0786          92 GKKLAIFLATA  102 (404)
T ss_pred             ChhHHHHHHHH
Confidence            99866554333

>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate

Probab=95.94  E-value=1.8  Score=42.02  Aligned_cols=78  Identities=13%  Similarity=0.178  Sum_probs=39.6

Q ss_pred             HHHHHHHHhh------cccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCChHHHHHh
Q 018715           36 CIVIGHLLEE------NRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRN  109 (351)
Q Consensus        36 ~~~~~~~l~~------~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~~~~l~~~  109 (351)
                      ..++|+++++      |..+|+++.-=+++.++.+.....    .....++|.+ +.+....+..=..|++.+.+.+||-
T Consensus        15 lLliG~~Lr~ki~~lqk~~IPasvIgGli~~il~~~l~~~----~~~~~~f~~~-l~~~lm~~fF~~igL~~~~~~lkkg   89 (368)
T PF03616_consen   15 LLLIGKFLRAKIPFLQKLFIPASVIGGLIFAILPLILGGF----GGISISFDTS-LQDFLMIIFFTTIGLGASLKLLKKG   89 (368)
T ss_pred             HHHHHHHHHHHhHHHHHccCCchHHHHHHHHHHHHHHHhc----CceEEEechh-HHHHHHHHHHHHHhhccchhhHHhh
Confidence            3355666653      466887653323333343332221    1112344432 2333222222235888899999998


Q ss_pred             hHHHHHHHH
Q 018715          110 FMTIMLFGA  118 (351)
Q Consensus       110 ~~~i~~la~  118 (351)
                      ++++.....
T Consensus        90 g~~~~~~~~   98 (368)
T PF03616_consen   90 GKAVLIFLL   98 (368)
T ss_pred             HHHHHHHHH
Confidence            887665443

The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=95.73  E-value=0.48  Score=49.00  Aligned_cols=103  Identities=10%  Similarity=0.149  Sum_probs=65.8

Q ss_pred             HHHHhhHHHhhHhhhcCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhhccccHHHH
Q 018715           85 FFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCT  164 (351)
Q Consensus        85 ~~~i~L~~ilF~aGl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~~v  164 (351)
                      +..+++|+.....|.++|.+.+.+++..++.+.....+.-...+...+. ..      ++++..++.+|..+++......
T Consensus       266 f~~lll~lFFi~vGm~id~~~l~~~~~~il~~~~~~l~~K~~~~~~~~~-~~------g~~~~~al~~g~~L~~~Gef~~  338 (601)
T PRK03659        266 FKGLLLGLFFISVGMALNLGVLYTHLLWVLISVVVLVAVKGLVLYLLAR-LY------GLRSSERMQFAGVLSQGGEFAF  338 (601)
T ss_pred             HHHHHHHHHHHHHhhhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-Hh------CCCHHHHHHHHHHHhccccHHH
Confidence            6788888888888999999999988877665554444444444333333 33      8999999999999888876553


Q ss_pred             H--HHhcccC-Cc-hhHHHHHHHhhhhhHHHHHH
Q 018715          165 L--QVLNQDE-TP-LLYSLVFGEGVVNDATSVVL  194 (351)
Q Consensus       165 ~--~il~~~~-~~-~l~~~l~gEs~lnD~~aivl  194 (351)
                      +  ..-.+.+ .+ +..+.+.....+.-.++-++
T Consensus       339 vl~~~a~~~g~i~~~~~~~lv~~v~ls~~~tP~l  372 (601)
T PRK03659        339 VLFSAASSQRLLQGDQMALLLVVVTLSMMTTPLL  372 (601)
T ss_pred             HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            3  2223344 23 45555544444444333333

>TIGR00698 conserved hypothetical integral membrane protein

Probab=95.73  E-value=2  Score=41.03  Aligned_cols=115  Identities=11%  Similarity=0.136  Sum_probs=66.4

Q ss_pred             ccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCChHHHHHhhHHHHHHHHHHHHHHHH
Q 018715           47 RWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFV  126 (351)
Q Consensus        47 ~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~~~~l~~~~~~i~~la~~g~~~~~~  126 (351)
                      ..++..+..++.|+++|.......+.....-.++..+.+.++++.    .-|.+++++++.+.+.+.+......+..+..
T Consensus        29 ~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~gIV----LlG~~l~~~~i~~~G~~~l~~~~~~v~~~~~  104 (335)
T TIGR00698        29 PALSALFLAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIGIT----LYGFRLTFPYIADVGPNEIVADTLILTSTFF  104 (335)
T ss_pred             CCCcHHHHHHHHHHHHhccccccchhhccchHHHHHHHHHHHHHH----HHCccccHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            346666555666666654210000111011122333456666653    4588999999999998887766655555443


Q ss_pred             HHHHHHHHHHhhcccCCCCHHHHHHHh---hhhccccHHHHHHHhccc
Q 018715          127 IISAGAVHFFKQMNIGTLKIGDYLAIG---AIFAATDSVCTLQVLNQD  171 (351)
Q Consensus       127 ~~~~~~~~~l~~~~~~~~~~~~alllg---ailsaTdp~~v~~il~~~  171 (351)
                      ...+...-.+      +.+...+.++|   +|..++..+++.++.|..
T Consensus       105 ~~~~~g~k~l------~l~~~~~~Lia~GtsICGaSAi~A~a~~i~A~  146 (335)
T TIGR00698       105 LTVFLGSSRL------KLDKQMSILLGAGSSICGAAAVAAIEPVIKAE  146 (335)
T ss_pred             HHHHHHHHHh------CCChhHHHHHHcchhHHHHHHHHHhccccCCC
Confidence            3333332223      77888888887   666777777777777643

Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.

>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters

Probab=95.72  E-value=0.18  Score=43.30  Aligned_cols=121  Identities=17%  Similarity=0.177  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHh-hcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCC---hHHHHHh
Q 018715           34 CACIVIGHLLE-ENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVK---KKQFFRN  109 (351)
Q Consensus        34 ~~~~~~~~~l~-~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~---~~~l~~~  109 (351)
                      .++..+|++-- +..++-...+.+++|+++|......+..    ...-.++.+.++++...++..|++.-   .+.+||+
T Consensus         7 ~lG~llG~i~i~~~~~LG~a~G~L~vgL~~G~~~~~~~~~----~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~   82 (169)
T PF06826_consen    7 ALGYLLGRIKIPGGFSLGAAGGVLFVGLILGALGRTGPIF----LPISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRG   82 (169)
T ss_pred             HHHHHhcceeeccceeccccHHHHHHHHHHHHhhhccCCC----CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555444 4456667779999999999764322211    11112356889999999999999877   4566777


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhh-ccccHHHHHH
Q 018715          110 FMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIF-AATDSVCTLQ  166 (351)
Q Consensus       110 ~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgail-saTdp~~v~~  166 (351)
                      ..+...++...+..+........++++      +++..  ...|.+. +-|+|.+...
T Consensus        83 G~~~~~~~~~i~~~~~~~~~~~~~~~~------~l~~~--~~~G~~aGa~T~tp~L~~  132 (169)
T PF06826_consen   83 GLKLLLLGVIITLVPLLIALVIGRYLF------KLNPG--IAAGILAGALTSTPALAA  132 (169)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHH--HHHHHHHccccCcHHHHH
Confidence            777778787777777666555555555      56644  4555555 3345444333

Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.

>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes

Probab=95.71  E-value=0.52  Score=40.98  Aligned_cols=145  Identities=14%  Similarity=0.099  Sum_probs=60.7

Q ss_pred             HhhHHHhhHhhhcCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhhccccHHHHHHH
Q 018715           88 YLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQV  167 (351)
Q Consensus        88 i~L~~ilF~aGl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~~v~~i  167 (351)
                      +.+...+|..|.++|.+++++..|+.-.+ ..+.+..+...-..++.+...    -++.......|.++.+..|....+-
T Consensus         2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l-~~~l~~~~~i~Plla~~l~~~----~~~~~~~~~~Gl~l~~~~P~~~~s~   76 (187)
T PF01758_consen    2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLL-LIGLLAQFLIMPLLAFGLAWL----LLPLSPALALGLLLVAACPGGPASN   76 (187)
T ss_dssp             -HHHHHHHHHHHC--GGGGHHHHHSHHHH-HHHHHHHHHHHHHHHHHHH-H----HTT--HHHHHHHHHHHHS-B-THHH
T ss_pred             hhhhHHHHHhhhcccHHHHHHHHhChHHH-HHHHHHHHHHHHHHHHHHHHH----HhcCCHHHHHHHHHHhcCCcHHHHH
Confidence            35677899999999999998776552221 123333333333333222101    1233334555555544444433332


Q ss_pred             hc---ccCCchhHHHHHHHhhhhhHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018715          168 LN---QDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIK  241 (351)
Q Consensus       168 l~---~~~~~~l~~~l~gEs~lnD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~~~G~~~~~l~~  241 (351)
                      .-   ..|+..+.   .+-..+|...+.+..-....+..+.....+ .........+....+++=.+.|....+..+
T Consensus        77 ~~t~l~~Gd~~ls---~~lt~istll~~~~~P~~~~l~~~~~~~~~-~~~~~~~~~~~l~~v~lPl~lG~l~r~~~p  149 (187)
T PF01758_consen   77 VFTYLAGGDVALS---VSLTLISTLLAPFLMPLLLYLLSGGSVDVD-SISPWDIIKSLLLIVILPLLLGMLLRKYLP  149 (187)
T ss_dssp             HHHHHTT--HHHH---HHHHHHHHHHHHHHHHHHHHHHH-GGGHHH----HHHHHHHHHHHTHHHHHHHHHHHHHHG
T ss_pred             HHHHHhCCCcccc---cceeeHHHHHHHHHHHHHHHHHhccccCCc-hhhHHHHHHHHHheehHHHhHHHHHHHHhh
Confidence            22   12222222   233455555555554444444333322222 111223333444444444455555555444

They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.

>COG0385 Predicted Na+-dependent transporter [General function prediction only]

Probab=95.71  E-value=1.8  Score=40.77  Aligned_cols=152  Identities=14%  Similarity=0.089  Sum_probs=85.2

Q ss_pred             HHHHhhHHHhhHhhhcCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhhccccHHHH
Q 018715           85 FFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCT  164 (351)
Q Consensus        85 ~~~i~L~~ilF~aGl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~~v  164 (351)
                      ....++..++|.-|++++.+++++..+.-.. -..+...++.+.-...+.+..     -++...-+..|-++..+-|..+
T Consensus        39 ~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~-vligl~~qfvlmPlla~~~~~-----~~~l~~~l~~Gl~ll~~~Pggv  112 (319)
T COG0385          39 AIPIALALIMFGMGLTLSREDFLAGLKHPRL-VLIGLAAQFVLMPLLALLLAK-----LFPLPPELAVGLLLLGCCPGGV  112 (319)
T ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHhhcchHH-HHHHHHHHHHHHHHHHHHHHH-----HcCCCHHHHHhHHheeeCCCch
Confidence            4588899999999999999999877655332 223444444444333333221     2235555777777777777666


Q ss_pred             HHHhcccCCc-hhHHHHHHHhhhhhHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018715          165 LQVLNQDETP-LLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFIIKKL  243 (351)
Q Consensus       165 ~~il~~~~~~-~l~~~l~gEs~lnD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~~~G~~~~~l~~~~  243 (351)
                      .+..-..-.+ +.. .-..++..+..++....=....+..++..+.+.++.+.+.+.+.+.=..+|.++=.....+.++.
T Consensus       113 ~S~~~t~lAkGnVa-lsV~~tsvStll~~f~tPllv~l~~~~~v~~~~~~m~~~i~~~vllP~~LG~~~r~~~~~~~~~~  191 (319)
T COG0385         113 ASNAMTYLAKGNVA-LSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFLSILLQVLLPFVLGQLLRPLLPKWVERL  191 (319)
T ss_pred             hHHHHHHHhcCcHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6643221111 111 11123344555665554444444333322334556677777777777777776666665555544

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=95.49  E-value=0.64  Score=48.28  Aligned_cols=96  Identities=9%  Similarity=0.008  Sum_probs=61.5

Q ss_pred             HHHHhhHHHhhHhhhcCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhhccccHHHH
Q 018715           85 FFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCT  164 (351)
Q Consensus        85 ~~~i~L~~ilF~aGl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~~v  164 (351)
                      |..+++|+.....|.++|++.+.++++.++.+....++.-.+.+...+. .+      ++++..++.+|..+++-.....
T Consensus       269 f~~lll~lFFi~vG~~id~~~l~~~~~~il~~~~~~~~~K~~~~~~~~~-~~------g~~~~~a~~~gl~L~~~Gef~~  341 (621)
T PRK03562        269 FKGLLLGLFFIAVGMSIDFGTLLENPLRILILLLGFLAIKIAMLWLLAR-PL------GVPRKQRRWFAVLLGQGGEFAF  341 (621)
T ss_pred             HHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh------CCCHhHHHHHHHHHhccccHHH
Confidence            6678888777788999999999888777665554444444444433333 33      8999999999998887655432


Q ss_pred             --HHHhcccC-Cc-hhHHHHHHHhhhh
Q 018715          165 --LQVLNQDE-TP-LLYSLVFGEGVVN  187 (351)
Q Consensus       165 --~~il~~~~-~~-~l~~~l~gEs~ln  187 (351)
                        ..+-.+.+ .+ +..+.+.....++
T Consensus       342 vl~~~a~~~~~i~~~~~~~lv~~v~lS  368 (621)
T PRK03562        342 VVFGAAQMANVLEPEWAKLLTLAVALS  368 (621)
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence              23333444 23 4555544444333

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=95.21  E-value=1.1  Score=45.77  Aligned_cols=107  Identities=12%  Similarity=0.048  Sum_probs=65.1

Q ss_pred             HHHHhhHHHhhHhhhcCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhhccccHHHH
Q 018715           85 FFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCT  164 (351)
Q Consensus        85 ~~~i~L~~ilF~aGl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~~v  164 (351)
                      +..+++|+.....|+++|.+.+.+++..+..+.....+.-.......+. .+      +.++.+++..|..+++......
T Consensus       277 ~~~~f~plFFv~~G~~~d~~~l~~~~~~~~~~~~~~~v~K~~~~~~~~~-~~------g~~~~~a~~~gl~l~~~Gef~l  349 (558)
T PRK10669        277 LRDAFAVLFFVSVGMLFDPMILIQQPLAVLATLAIIVFGKSLAAFFLVR-LF------GHSRRTALTIAASLAQIGEFAF  349 (558)
T ss_pred             HHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh------CCChhhHHHHHHHHhcccchHH
Confidence            4577777777778999999998877655444333333333322222222 33      7899999999999987666443


Q ss_pred             H--HHhcccC-Cc-hhHHHHHHHhhhhhHHHHHHHHHH
Q 018715          165 L--QVLNQDE-TP-LLYSLVFGEGVVNDATSVVLFNAI  198 (351)
Q Consensus       165 ~--~il~~~~-~~-~l~~~l~gEs~lnD~~aivlf~~~  198 (351)
                      +  .+-.+.+ .+ +.+..+...+++.-.++-.++...
T Consensus       350 ii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~~~~  387 (558)
T PRK10669        350 ILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFTLL  387 (558)
T ss_pred             HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3  2233444 33 466666666666655555555443

>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional

Probab=95.09  E-value=0.79  Score=44.15  Aligned_cols=203  Identities=12%  Similarity=0.148  Sum_probs=110.8

Q ss_pred             hHHHHHhhHHHhhHhhhcCChHHH-------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHh-h
Q 018715           83 DLFFIYLLPPIIFNAGFQVKKKQF-------FRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIG-A  154 (351)
Q Consensus        83 ~~~~~i~L~~ilF~aGl~l~~~~l-------~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllg-a  154 (351)
                      ++.-+....+..|..|+|++++..       ||..-+ ..-++.|++.++     ..|..++      .+  ....=| +
T Consensus        58 ~WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP-~~AAlGGmivPA-----lIy~~~n------~~--~~~~~GW~  123 (383)
T PRK14854         58 HWINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITP-AIAAFAGLAMPS-----LIYLSIN------HD--IKVINGWA  123 (383)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHH-HHHHHhchHHHH-----HHHHhhc------cC--CcccCccc
Confidence            344555666667888998876543       222222 233556666664     2344442      11  111111 5


Q ss_pred             hhccccHHHHHHHhccc--CCc-hhHHHHHHHhhhhhHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Q 018715          155 IFAATDSVCTLQVLNQD--ETP-LLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVI  231 (351)
Q Consensus       155 ilsaTdp~~v~~il~~~--~~~-~l~~~l~gEs~lnD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~~  231 (351)
                      +=.+||.+-...++.-.  +.| .++..+..-++.||..+++.-.++.   .++.+   +.       +.......++  
T Consensus       124 IP~ATDIAFAlgvLallG~rvP~~lrvFLlaLAIvDDlgAI~VIAlFY---t~~i~---~~-------~L~~A~~~~~--  188 (383)
T PRK14854        124 IPSATDIAFTLGILALLGTRVPAKLKLLVITIAIFDDIAAIAIIAIFY---TKSLS---LL-------SLSLGTLFIL--  188 (383)
T ss_pred             cccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeec---CCCcc---HH-------HHHHHHHHHH--
Confidence            66899999999987744  466 5899999999999999987766553   22222   11       0111111111  


Q ss_pred             HHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhcccccCCChhHHHHHHHHHHHHHH
Q 018715          232 AGLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSF  311 (351)
Q Consensus       232 ~G~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~ae~lg~Sgilav~~~Gl~l~~~~~~~~~~~~~~~~~~~~~~~~~  311 (351)
                          .-+.++|.   ++.+.  ...-+......++.-..-|.++-+|.++.|+.+-.+..+..+  --++.++..+....
T Consensus       189 ----~l~~~nr~---~~v~~--~~~Y~~~G~~lW~~~l~SGvHaTiAGV~~a~~iP~~~~~~~~--pl~rleh~L~p~v~  257 (383)
T PRK14854        189 ----AMIICNRI---FKINR--SSVYVVLGFFAWFCTIKSGVHATLAGFTTALCIPFRENDKDS--PANFMEDSLHPWII  257 (383)
T ss_pred             ----HHHHHHHh---cCCce--ehHHHHHHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCC--HHHHHHHHhhchHH
Confidence                11223332   11111  222233555666666678999999999999999764322211  12344444444444


Q ss_pred             HHHHHHHHHh--hhhh
Q 018715          312 VAEIFIFLYV--GMDA  325 (351)
Q Consensus       312 l~~~~~Fv~i--G~~i  325 (351)
                      ..-.-+|.+.  |..+
T Consensus       258 ~~IlPlFA~aNAGV~l  273 (383)
T PRK14854        258 YFILPVFAFANAGISF  273 (383)
T ss_pred             HhhHHHHHhhcCCeee
Confidence            4444455554  4444

>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional

Probab=95.06  E-value=0.67  Score=45.52  Aligned_cols=166  Identities=13%  Similarity=0.178  Sum_probs=97.1

Q ss_pred             HHHHHhhHHHhhHhhhcCChHHH-------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHh-hh
Q 018715           84 LFFIYLLPPIIFNAGFQVKKKQF-------FRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIG-AI  155 (351)
Q Consensus        84 ~~~~i~L~~ilF~aGl~l~~~~l-------~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllg-ai  155 (351)
                      ++-+....+..|..|+|++.+..       ||..-++ .-++.|++.++     ..|+.++. +.+   -    .=| ++
T Consensus        71 wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi-~AAlGGmivPA-----lIY~~~n~-~~~---~----~~GWgI  136 (438)
T PRK14856         71 WIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPV-IAALGGMIAPG-----LIYFFLNA-DTP---S----QHGFGI  136 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHH-HHHHhccHHHH-----HHHhheec-CCC---c----cCcccc
Confidence            34566666677888999886544       2222222 33556666654     33554422 110   0    111 56


Q ss_pred             hccccHHHHHHHhccc--CCc-hhHHHHHHHhhhhhHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 018715          156 FAATDSVCTLQVLNQD--ETP-LLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIA  232 (351)
Q Consensus       156 lsaTdp~~v~~il~~~--~~~-~l~~~l~gEs~lnD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~~~  232 (351)
                      -.+||.+-...++.-.  +.| .++..+..-++.||..+++.-.++.+   ++.+   +...       ...      +.
T Consensus       137 PmATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt---~~i~---~~~L-------~~a------~~  197 (438)
T PRK14856        137 PMATDIAFALGVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFYT---TNLK---FAWL-------LGA------LG  197 (438)
T ss_pred             ccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC---CCCc---HHHH-------HHH------HH
Confidence            6899999999988644  467 69999999999999999877665532   2222   1111       111      11


Q ss_pred             HHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhc
Q 018715          233 GLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSH  288 (351)
Q Consensus       233 G~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~ae~lg~Sgilav~~~Gl~l~~  288 (351)
                      +....+.+++..    .+  ....-+......++.-..-|.++-+|.++.|+.+-.
T Consensus       198 ~~~~l~~ln~~~----v~--~~~~Y~~~G~~lW~~~l~SGVHaTiAGV~lal~iP~  247 (438)
T PRK14856        198 VVLVLAVLNRLN----VR--SLIPYLLLGVLLWFCVHQSGIHATIAAVVLAFMIPV  247 (438)
T ss_pred             HHHHHHHHHHcC----Cc--cccHHHHHHHHHHHHHHHccCcHHHHHHHHHheeec
Confidence            122233344432    11  122223345566666667799999999999999854

>COG2431 Predicted membrane protein [Function unknown]

Probab=94.73  E-value=0.74  Score=42.15  Aligned_cols=89  Identities=24%  Similarity=0.255  Sum_probs=57.2

Q ss_pred             hhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCC---hH--HHHHhhHHHHHHHHHHHHHHH
Q 018715           51 ESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVK---KK--QFFRNFMTIMLFGAVGTLISF  125 (351)
Q Consensus        51 ~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~---~~--~l~~~~~~i~~la~~g~~~~~  125 (351)
                      +.+...+.|..+|......        .+ +++.-.++.+..++|..|.++.   ..  +.+-| |+.+.++ +-++++.
T Consensus       108 k~~~~vl~g~~~G~l~~~~--------~~-~~~~a~~~~L~~LlF~iGi~l~n~g~~~~~~~Ln-k~gl~l~-~i~ilss  176 (297)
T COG2431         108 KLLGVVLLGLALGLLTGSF--------LN-FPENASEYLLYLLLFLIGIQLGNSGISLRQVLLN-KRGLILA-FITLLSS  176 (297)
T ss_pred             HHHHHHHHHHHHHHHhccc--------cc-CchhHHHHHHHHHHHHHHHHhccccchhhhHHhc-cchHHHH-HHHHHHH
Confidence            4566778888888654321        11 2445678889999999999887   22  22223 2333434 3445566


Q ss_pred             HHHHHHHHHHHhhcccCCCCHHHHHHHhhhh
Q 018715          126 VIISAGAVHFFKQMNIGTLKIGDYLAIGAIF  156 (351)
Q Consensus       126 ~~~~~~~~~~l~~~~~~~~~~~~alllgail  156 (351)
                      ...|.++.+++      ++|+.+++.+++=.
T Consensus       177 liGG~iaa~~l------~lpl~~~lAmasG~  201 (297)
T COG2431         177 LIGGLIAAFLL------DLPLTTGLAMASGF  201 (297)
T ss_pred             HHHHHHHHHHH------hccHHHHHHHHhcc
Confidence            77777777777      88999888776543

>PLN03159 cation/H(+) antiporter 15; Provisional

Probab=94.59  E-value=0.71  Score=49.64  Aligned_cols=72  Identities=14%  Similarity=0.129  Sum_probs=44.6

Q ss_pred             HHHHhhHHHhhHhhhcCChHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhhccccHH
Q 018715           85 FFIYLLPPIIFNAGFQVKKKQFFRNF--MTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSV  162 (351)
Q Consensus        85 ~~~i~L~~ilF~aGl~l~~~~l~~~~--~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~  162 (351)
                      ...+++|+.....|+++|.+.+....  .....+.+.+.+.-.......+ .+.      ++++.+++.+|.++++-.-.
T Consensus       323 ~~~lflPlFFv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a-~~~------g~~~~eal~lG~lm~~kG~~  395 (832)
T PLN03159        323 VSGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIA-FFY------TMPFREGITLGFLMNTKGLV  395 (832)
T ss_pred             HHHHHHHHHHHHhhheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHH-HHh------CCCHHHHHHHHHHHhcccHH
Confidence            34678888888899999998885432  2222222222222222222222 233      89999999999999887644


Q ss_pred             H
Q 018715          163 C  163 (351)
Q Consensus       163 ~  163 (351)
                      .
T Consensus       396 ~  396 (832)
T PLN03159        396 E  396 (832)
T ss_pred             H
Confidence            4

>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional

Probab=94.43  E-value=0.85  Score=44.58  Aligned_cols=166  Identities=16%  Similarity=0.175  Sum_probs=97.4

Q ss_pred             HHHHHhhHHHhhHhhhcCChHHH-------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHh-hh
Q 018715           84 LFFIYLLPPIIFNAGFQVKKKQF-------FRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIG-AI  155 (351)
Q Consensus        84 ~~~~i~L~~ilF~aGl~l~~~~l-------~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllg-ai  155 (351)
                      ++-+....+..|..|+|++.+.+       ||..-++ .-++.|++.++     ..|+.++. +-+     .  .=| ++
T Consensus        66 wINDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPi-iAAlGGmivPA-----lIy~~~n~-~~~-----~--~~GWgI  131 (423)
T PRK14855         66 WVNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAV-VAALGGMLVPA-----ALYTALNA-GGP-----G--ASGWGV  131 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHH-HHHHhchHHHH-----HHHheeec-CCC-----c--cCcccc
Confidence            34456666667888999886644       2222222 33556666654     33444421 111     0  112 56


Q ss_pred             hccccHHHHHHHhccc--CCc-hhHHHHHHHhhhhhHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 018715          156 FAATDSVCTLQVLNQD--ETP-LLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIA  232 (351)
Q Consensus       156 lsaTdp~~v~~il~~~--~~~-~l~~~l~gEs~lnD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~~~  232 (351)
                      =.+||.+-...++.-.  +.| .++..+..-++.||..+++.-.++.   .++.+   +...       .....      
T Consensus       132 PmATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFY---t~~i~---~~~L-------~~a~~------  192 (423)
T PRK14855        132 PMATDIAFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFY---TSGLN---LLAL-------LLAAL------  192 (423)
T ss_pred             ccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeec---CCCCC---HHHH-------HHHHH------
Confidence            6899999999998754  467 5999999999999999987666543   22222   1111       11111      


Q ss_pred             HHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhc
Q 018715          233 GLLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSH  288 (351)
Q Consensus       233 G~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~ae~lg~Sgilav~~~Gl~l~~  288 (351)
                      +....+.+++..    .  .....-+......++.-..-|.++-+|.++.|+.+-.
T Consensus       193 ~~~~l~~ln~~~----v--~~~~~Y~~~G~~lW~~~l~SGVHaTiAGV~lal~iP~  242 (423)
T PRK14855        193 TWALALLAGRLG----V--TSLKIYAVLGALLWFFVLKSGLHPTVAGVLLALAVPI  242 (423)
T ss_pred             HHHHHHHHHHcC----C--ccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHhccc
Confidence            122233344431    1  1122223355566666667899999999999999955

>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments

Probab=94.32  E-value=0.25  Score=43.22  Aligned_cols=129  Identities=18%  Similarity=0.196  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCC-----hHHHHHhhHHHHHHHHHHHHHHHHHH
Q 018715           54 TALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVK-----KKQFFRNFMTIMLFGAVGTLISFVII  128 (351)
Q Consensus        54 ~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~-----~~~l~~~~~~i~~la~~g~~~~~~~~  128 (351)
                      ..+..|+++|....  . .     .+.. +...++.+..++|..|.++-     +|++|+..++.+.+.+...+- ....
T Consensus         3 ~~li~Gi~lG~~~~--~-~-----~~~~-~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlG-Sllg   72 (191)
T PF03956_consen    3 IALILGILLGYFLR--P-P-----FSLI-DKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILG-SLLG   72 (191)
T ss_pred             eeHHHHHHHHHHhc--c-c-----cccc-ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHH-HHHH
Confidence            45678889986432  1 1     1111 34778889999999999874     445666667888777655544 4566


Q ss_pred             HHHHHHHHhhcccCCCCHHHHHHHhhhhccccHHHHHHHhcccCCchhHHHHHHHhhhhhHHHHHHHHHHHH
Q 018715          129 SAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQS  200 (351)
Q Consensus       129 ~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~~v~~il~~~~~~~l~~~l~gEs~lnD~~aivlf~~~~~  200 (351)
                      +..+..++      ++|+.+++..|+=..==+-..  ..+.|.+.|+.+++-.-.-++-+.++++..-.+..
T Consensus        73 g~l~~~ll------~~~~~~~lav~sG~GwYSlsg--~~i~~~~~~~~G~iafl~n~~RE~~a~~~~P~~~r  136 (191)
T PF03956_consen   73 GLLASLLL------GLSLKESLAVASGFGWYSLSG--VLITQLYGPELGTIAFLSNLFREILAIILIPLLAR  136 (191)
T ss_pred             HHHHHHHh------cCCHHHHHHHHccCcHHHhHH--HHHHhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66777776      889999988876543222211  22344455566666555555666666666665555

Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]

Probab=94.15  E-value=0.93  Score=44.42  Aligned_cols=99  Identities=17%  Similarity=0.188  Sum_probs=61.0

Q ss_pred             ccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHH-HhhHHHhhHhhhcCChHHHHHhhHHHHHHHHHHHHHHH
Q 018715           47 RWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFI-YLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISF  125 (351)
Q Consensus        47 ~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~-i~L~~ilF~aGl~l~~~~l~~~~~~i~~la~~g~~~~~  125 (351)
                      .+++...+..++|+++.-.      ....+...-+-+.+.+ +++|+.....|.++|.+.+.+++..+..+....+..-.
T Consensus       241 ~gls~ilGAFlaGl~ls~~------~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~~~~~~l~~~~~~i~~K~  314 (397)
T COG0475         241 LGLSMILGAFLAGLLLSES------EYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLENLLLILLLVALAILGKI  314 (397)
T ss_pred             hChhHHHHHHHHHHHhccc------ccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhccHHHHHHHHHHHHHHHH
Confidence            6777888888888877521      1110111112234778 88888888899999999999999885555544444443


Q ss_pred             HHHHHHHHHHHhhcccCCCCHHHHHHHhhhhcc
Q 018715          126 VIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAA  158 (351)
Q Consensus       126 ~~~~~~~~~~l~~~~~~~~~~~~alllgailsa  158 (351)
                      ......++ ..      +++...+...|....+
T Consensus       315 ~~~~~~~~-~~------g~~~~~~~~~g~~~~~  340 (397)
T COG0475         315 LGAYLAAR-LL------GFSKRLALGIGLLLRQ  340 (397)
T ss_pred             HHHHHHHH-HH------cCcHHHHHHHHhhhhh
Confidence            33332222 33      5666666666655544

>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed

Probab=94.06  E-value=2.2  Score=41.32  Aligned_cols=203  Identities=15%  Similarity=0.169  Sum_probs=112.3

Q ss_pred             HHHHHhhHHHhhHhhhcCChHHH-------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhh
Q 018715           84 LFFIYLLPPIIFNAGFQVKKKQF-------FRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIF  156 (351)
Q Consensus        84 ~~~~i~L~~ilF~aGl~l~~~~l-------~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgail  156 (351)
                      ++-+....+..|..|+|++++..       ||..-+ ..-++.|++.++     ..|+.++. +.+..  ..+.   ++=
T Consensus        62 wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP-i~AAlGGmivPA-----liy~~~n~-~~~~~--~~GW---aIP  129 (388)
T PRK09561         62 WINDGLMAVFFLLIGLEVKRELLEGSLASRRQAALP-VIAAIGGMLVPA-----LIYLLFNY-ADPVT--REGW---AIP  129 (388)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHH-HHHHHhchHHHH-----HHHhheec-CCCcc--cCcc---ccc
Confidence            34456666667889999986654       222222 233556666654     33444422 11100  0011   456


Q ss_pred             ccccHHHHHHHhccc--CCc-hhHHHHHHHhhhhhHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018715          157 AATDSVCTLQVLNQD--ETP-LLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAG  233 (351)
Q Consensus       157 saTdp~~v~~il~~~--~~~-~l~~~l~gEs~lnD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~~~G  233 (351)
                      .+||.+-...++.-.  +.| .++..+..-++.||..+++.-.++.   .++.+   +.       +.......      
T Consensus       130 ~ATDIAFalgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFY---t~~i~---~~-------~L~~a~~~------  190 (388)
T PRK09561        130 AATDIAFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALFY---TSDLS---MV-------SLGVAAVA------  190 (388)
T ss_pred             cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeec---CCCcc---HH-------HHHHHHHH------
Confidence            799999999998644  466 5899999999999999997766553   22222   11       11111111      


Q ss_pred             HHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhcccccCCChhHHHHHHHHHHHHHHHH
Q 018715          234 LLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVA  313 (351)
Q Consensus       234 ~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~ae~lg~Sgilav~~~Gl~l~~~~~~~~~~~~~~~~~~~~~~~~~l~  313 (351)
                      ....+.+++..    .+  ....-+......++.-..-|.++-+|.+..|+.+-.+.+++.+  --++.+|..+......
T Consensus       191 ~~~l~~ln~~~----v~--~~~~Y~~~G~~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~--pl~rleh~L~p~v~~~  262 (388)
T PRK09561        191 IAVLAVLNLCG----VR--RTSVYILVGVVLWVAVLKSGVHATLAGVIVGFFIPLKEKHGRS--PAERLEHGLHPWVAFL  262 (388)
T ss_pred             HHHHHHHHHcC----Cc--cchHHHHHHHHHHHHHHHccccHHHHHHHHHhhccccCCCCCC--HHHHHHHHhhhhhhhe
Confidence            22233334432    11  1222233555667766778999999999999999764322211  1234455555544444


Q ss_pred             HHHHHHHh--hhhh
Q 018715          314 EIFIFLYV--GMDA  325 (351)
Q Consensus       314 ~~~~Fv~i--G~~i  325 (351)
                      -.-+|.+.  |..+
T Consensus       263 IlPlFAfaNAGV~l  276 (388)
T PRK09561        263 ILPLFAFANAGVSL  276 (388)
T ss_pred             eHHHHHhhcCCeee
Confidence            44455544  5444

>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]

Probab=93.77  E-value=4.8  Score=36.00  Aligned_cols=134  Identities=14%  Similarity=0.054  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHH-HhhHHHhhHhhhcCChHHHHHh
Q 018715           31 ALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFI-YLLPPIIFNAGFQVKKKQFFRN  109 (351)
Q Consensus        31 ~lL~~~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~-i~L~~ilF~aGl~l~~~~l~~~  109 (351)
                      .+-+....+++.+.||.|-|..-+.++.=+++-.++... +. +.+....+.+++.. +.-..+-|..-+.=+++.+||+
T Consensus        12 ~lTl~~y~~a~~l~~r~~~~~l~PlLv~~~~li~~L~~~-~i-~Y~~Y~~g~~~i~~lLgPAtVAlAvPLYkq~~~ik~~   89 (230)
T COG1346          12 LLTLLAYFAAKRLYKRTKSPFLNPLLVATVLLIAFLLLF-GI-SYEDYMKGGQWINFLLGPATVALAVPLYKQRHLIKRH   89 (230)
T ss_pred             HHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHc-CC-CHHHHhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            344455667777777677555544433323333333222 22 11112223333332 2233344555566689999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhh--ccccHHHHHHHhcccC-CchhH
Q 018715          110 FMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIF--AATDSVCTLQVLNQDE-TPLLY  177 (351)
Q Consensus       110 ~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgail--saTdp~~v~~il~~~~-~~~l~  177 (351)
                      |++++.-...|...........+.+ +      +.+-.   +.-+++  |.|.|.+ ..+-++.| .|.+.
T Consensus        90 w~~I~~g~~vGs~~ai~s~~llak~-~------g~~~~---~~~Sl~PkSvTTpiA-m~vs~~iGGip~lt  149 (230)
T COG1346          90 WKPILAGVLVGSVVAIISGVLLAKL-F------GLSPE---LILSLLPKSVTTPIA-MEVSESIGGIPALT  149 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-h------CCCHH---HHHHhcccccccHHH-HHHHHhcCCchHHH
Confidence            9999887777777654444333333 3      44433   222333  5666666 35556654 55543

>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication

Probab=93.61  E-value=3.2  Score=34.97  Aligned_cols=104  Identities=11%  Similarity=-0.060  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCChHHHHHhhHHH
Q 018715           34 CACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTI  113 (351)
Q Consensus        34 ~~~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~~~~l~~~~~~i  113 (351)
                      .++...+.+. ++.++|.  +.++..++.+..........    .+ -|+.+...+...+-...|.+.+.+.+++..+..
T Consensus         5 ~~~~~~g~l~-~~l~~Pa--~~llG~mi~~~~~~~~~~~~----~~-~P~~~~~~~qviiG~~iG~~f~~~~l~~~~~~~   76 (156)
T TIGR03082         5 LVGLAGGLLA-SLLGLPA--AWLLGPLLAGAVLSLAGGLE----IT-LPPWLLALAQVVIGILIGSRFTREVLAELKRLW   76 (156)
T ss_pred             HHHHHHHHHH-HHHCCCc--HHHHHHHHHHHHHHhcCCcc----CC-CCHHHHHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence            3444444544 4578885  34445555554433221111    12 345678888888889999999987776665543


Q ss_pred             HH--HHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHH
Q 018715          114 ML--FGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLA  151 (351)
Q Consensus       114 ~~--la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~all  151 (351)
                      ..  .....++..+...+...+...      ++++.++++
T Consensus        77 ~~~l~~~~~~l~~~~~~~~~l~~~~------~~~~~ta~L  110 (156)
T TIGR03082        77 PAALLSTVLLLALSALLAWLLARLT------GVDPLTAFL  110 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH------CCCHHHHHH
Confidence            32  222222223334444444444      788888764

The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra

>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase

Probab=93.29  E-value=2.8  Score=39.76  Aligned_cols=104  Identities=9%  Similarity=-0.019  Sum_probs=59.0

Q ss_pred             HHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCChHHHHHhhHHHH
Q 018715           35 ACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIM  114 (351)
Q Consensus        35 ~~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~~~~l~~~~~~i~  114 (351)
                      .+...+..+.|+.|+|..  .++..++.+..........    .+. |+.+...+-..+=-..|.+.|.+.+|+..+...
T Consensus       162 ~~~~~g~~l~~~l~iPa~--~llGpml~~a~~~~~~~~~----~~~-P~~l~~~aqv~iG~~iG~~f~~~~l~~~~~~~~  234 (318)
T PF05145_consen  162 LAALAGGLLARRLRIPAP--WLLGPMLVSAILNLFGGPS----FSL-PPWLVNAAQVLIGASIGSRFTRETLRELRRLLP  234 (318)
T ss_pred             HHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHHHHhCCC----CCC-CHHHHHHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence            334455555566888853  4444444444333221111    222 456788888888889999999888777665433


Q ss_pred             H--HHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHH
Q 018715          115 L--FGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLA  151 (351)
Q Consensus       115 ~--la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~all  151 (351)
                      .  ......+..+...++..+.+.      ++++.++++
T Consensus       235 ~~l~~~~~~l~~~~~~a~~l~~~~------~~~~~t~~L  267 (318)
T PF05145_consen  235 PALLSTLLLLALCALFAWLLSRLT------GIDFLTALL  267 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH------CCCHHHHHH
Confidence            2  222233333344555555554      788887665

The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.

>TIGR00210 gltS sodium--glutamate symport carrier (gltS)

Probab=92.99  E-value=9.8  Score=37.28  Aligned_cols=31  Identities=19%  Similarity=0.405  Sum_probs=22.3

Q ss_pred             HHHHHHHHHhh-----ccchHHHHHHHHHhhhcccc
Q 018715          261 AYLSYMLAELF-----YLSGILTVFFCGIVMSHYTW  291 (351)
Q Consensus       261 ~~~~~~~ae~l-----g~Sgilav~~~Gl~l~~~~~  291 (351)
                      ....|.+.+.+     .+.....+++.|++++|..+
T Consensus       228 i~iG~~i~~~l~~~~~~lP~fv~am~~giiirni~~  263 (398)
T TIGR00210       228 LLVGYELNDLVAKTALMLPTFVWCLFVGVILRNPLS  263 (398)
T ss_pred             HHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHH
Confidence            34455555543     57889999999999998554

>TIGR00210 gltS sodium--glutamate symport carrier (gltS)

Probab=92.84  E-value=7.3  Score=38.15  Aligned_cols=143  Identities=9%  Similarity=-0.027  Sum_probs=89.9

Q ss_pred             ccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCChHHHHHhhHHHHHHHHHHHHHHHH
Q 018715           47 RWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFV  126 (351)
Q Consensus        47 ~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~~~~l~~~~~~i~~la~~g~~~~~~  126 (351)
                      ..+|.-+..++.|+++-.+........   ..+-.-+.+.++.+-+.+-.+=.++|+.++.+++.+.+.+...+++++..
T Consensus       243 ~~lP~fv~am~~giiirni~~~~~~~~---~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~~~a~Plliil~~q~i~~~l  319 (398)
T TIGR00210       243 LMLPTFVWCLFVGVILRNPLSFKKFPW---VAERAVSVIGNVSLSLFLAIALMSLQLWELADLAGPIALILLVQVMFMAL  319 (398)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHhCccc---cchHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            568988888888888877654332111   11112244677888888888888999999999999999999999988765


Q ss_pred             HHHHHHHHHHhhcccCCCCHHHHH----HHhhhhccccHHHH--HHHhcccCCc-hhHHH-HHHHhhhhhHHHHHHHHHH
Q 018715          127 IISAGAVHFFKQMNIGTLKIGDYL----AIGAIFAATDSVCT--LQVLNQDETP-LLYSL-VFGEGVVNDATSVVLFNAI  198 (351)
Q Consensus       127 ~~~~~~~~~l~~~~~~~~~~~~al----llgailsaTdp~~v--~~il~~~~~~-~l~~~-l~gEs~lnD~~aivlf~~~  198 (351)
                      ..-+..+..+      +-++..+.    ..|--+.+|..+..  .++-++++.+ |-.-+ =.--+.+-|.........+
T Consensus       320 ~~~fv~fr~m------g~~ydaaV~~ag~~G~~lGatptaianm~av~~~yg~s~~af~ivPlvgaf~id~~n~~~i~~f  393 (398)
T TIGR00210       320 YAIFVTFRLM------GKDYDAAVLCAGHCGFGLGATPTAIANMQAVTERFGPSHQAFIVVPLVGAFFIDIINALVIKQF  393 (398)
T ss_pred             HHHHHhHHhc------cchHHHHHHhcccccccccchHHHHHHHHHHHhccCCCCcceehhhhHHHHHHHHhhHHHHHHH
Confidence            5544444444      22344333    35555555554443  3566777754 52222 1345566676665554444

>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function

Probab=92.41  E-value=4.5  Score=38.21  Aligned_cols=138  Identities=20%  Similarity=0.283  Sum_probs=83.3

Q ss_pred             hhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcC--ChHHHHHhhHHHHHHHHHHHHHHHHHH
Q 018715           51 ESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQV--KKKQFFRNFMTIMLFGAVGTLISFVII  128 (351)
Q Consensus        51 ~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l--~~~~l~~~~~~i~~la~~g~~~~~~~~  128 (351)
                      ..+..++.|+++|....  +.+. ...-.+-.+ .+.-.|++.+.|-|+.-  +.+++||..+.....++..-++...+.
T Consensus       178 ~sv~LLlGgliIG~~~g--~~g~-~~i~pf~~~-lF~G~L~lFLLeMGl~A~~rL~~l~~~g~~li~Fgi~~Pli~a~ig  253 (327)
T PF05982_consen  178 KSVVLLLGGLIIGFLAG--PEGV-ESIKPFFVD-LFKGVLCLFLLEMGLVAARRLRDLRKVGWFLIAFGILMPLINALIG  253 (327)
T ss_pred             chHHHHHHHHHHhheeC--ccch-hhccchhhc-cHHHHHHHHHHHhhHHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            35667777888886432  1111 111111112 45556778888888854  467888888888888877777665444


Q ss_pred             HHHHHHHHhhcccCCCCHHHHHHHhhhhccccHHHHHHHhccc--C-CchhHHHH-HHHh-hhhhHHHHHHHHHHH
Q 018715          129 SAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQVLNQD--E-TPLLYSLV-FGEG-VVNDATSVVLFNAIQ  199 (351)
Q Consensus       129 ~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~~v~~il~~~--~-~~~l~~~l-~gEs-~lnD~~aivlf~~~~  199 (351)
                      .... ++.      +++...+.+++.+.++-|=.++-+.+|..  + +|.++-.. .|-. -+|=.+++.+|..+.
T Consensus       254 ~~lg-~~~------gls~Gg~~llavLaASASYIAvPAAmR~AiPeAnpslyl~~SLgiTFPfNi~iGIPLY~~la  322 (327)
T PF05982_consen  254 IGLG-WLL------GLSPGGAVLLAVLAASASYIAVPAAMRAAIPEANPSLYLTASLGITFPFNILIGIPLYYALA  322 (327)
T ss_pred             HHHH-HHh------CCCCccHHHHHHHHhhHhhhhhhHHHHhhCcccCchHHHHHHHhcccchhHhhccHHHHHHH
Confidence            3333 444      89999999999888777766666666643  1 23222211 1111 467777777776544

>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter

Probab=92.06  E-value=1.3  Score=45.56  Aligned_cols=122  Identities=14%  Similarity=0.151  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCChH---HHHH
Q 018715           32 LLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKK---QFFR  108 (351)
Q Consensus        32 lL~~~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~~~---~l~~  108 (351)
                      .+.++..+|++=-+..++-.+.+.+++|+++|...           .+.+ +.+.++++.+.+|..|++.-.+   .+||
T Consensus        18 ~i~lG~~lG~iki~~~~LG~~~gvLfvgl~~G~~g-----------~~i~-~~v~~~gl~lFvy~vG~~~Gp~Ff~~l~~   85 (562)
T TIGR03802        18 SLALGYLIGKIKFGSFQLGGVAGSLIVAVLIGQLG-----------IQID-PGVKAVFFALFIFAIGYEVGPQFFASLKK   85 (562)
T ss_pred             HHHHhHhhcceEEeeeecchHHHHHHHHHHHHhcC-----------CCCC-hHHHHHHHHHHHHHhhhccCHHHHHHHHh
Confidence            34444444444333455666788999999999521           1122 3477899999999999999855   5556


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCH--HHHHHHhhhhccccHHHHHHHhcccC
Q 018715          109 NFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKI--GDYLAIGAIFAATDSVCTLQVLNQDE  172 (351)
Q Consensus       109 ~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~--~~alllgailsaTdp~~v~~il~~~~  172 (351)
                      +..+...+++..++.. ..+++.+++++      +++.  ...++=||.-+...-++....+++.+
T Consensus        86 ~g~~~~~~a~~~~~~~-~~~~~~~~~~~------g~~~~~~~Gl~aGalT~tp~l~aA~~a~~~~~  144 (562)
T TIGR03802        86 DGLREIILALVFAVSG-LITVYALAKIF------GLDKGTAAGLAAGGLTQSAVIGTAGDAIEKLG  144 (562)
T ss_pred             ccHHHHHHHHHHHHHH-HHHHHHHHHHh------CCCHHHHHHHHhchhhccHHHHHHHHHHHhcC
Confidence            5556666665555544 44455555555      5543  44555566555444455455554443

All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).

>PRK04288 antiholin-like protein LrgB; Provisional

Probab=91.86  E-value=3.9  Score=36.87  Aligned_cols=107  Identities=16%  Similarity=0.094  Sum_probs=54.5

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHhhcc-cCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHH-hhHHHhhHh
Q 018715           20 HKSVVSMNLFVALLCACIVIGHLLEENR-WMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIY-LLPPIIFNA   97 (351)
Q Consensus        20 ~~~~~~l~~~i~lL~~~~~~~~~l~~~~-~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i-~L~~ilF~a   97 (351)
                      |.+.++-+..+.+-+....+++.+.||. +-|-.-+.++.=+++-..+. ..+. +.+......+++..+ +-...-+..
T Consensus         3 ~~~~~~p~~~l~lTl~~y~~~~~l~~r~~~~~~lnPll~s~~~ii~~L~-~~~i-~Y~~Y~~g~~~l~~lLgPAtVALAv   80 (232)
T PRK04288          3 HLSTMTPYFGILVSLIAFGIGTILFKKSKGFFLFTPLFVAMVLGIAFLK-LTGI-SYEEYNIGGDIISFFLEPATIAFAI   80 (232)
T ss_pred             hhhhccHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHH-HhCC-CHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            3333333344555556667778887766 65544444333222222222 2221 111122233333322 222233444


Q ss_pred             hhcCChHHHHHhhHHHHHHHHHHHHHHHHHH
Q 018715           98 GFQVKKKQFFRNFMTIMLFGAVGTLISFVII  128 (351)
Q Consensus        98 Gl~l~~~~l~~~~~~i~~la~~g~~~~~~~~  128 (351)
                      -+.-+++.+||++++++.-...|...+.+..
T Consensus        81 PLY~q~~~lk~~~~~Il~~~~vG~~~~i~s~  111 (232)
T PRK04288         81 PLYKKRDVLKKYWWQILGGIVVGSVCSVLII  111 (232)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566789999999999887777777664433

>PRK04972 putative transporter; Provisional

Probab=91.61  E-value=3.2  Score=42.60  Aligned_cols=127  Identities=13%  Similarity=0.135  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHhh----cccCChhHHHHHHHHHHHHHHHhhcCCCCccccccCh---hHHHHHhhHHHhhHhhhcCC---
Q 018715           33 LCACIVIGHLLEE----NRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSE---DLFFIYLLPPIIFNAGFQVK---  102 (351)
Q Consensus        33 L~~~~~~~~~l~~----~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~---~~~~~i~L~~ilF~aGl~l~---  102 (351)
                      ++++.++|.+--+    ..++-...+.++.|+++|..-...     +...++++   ..+.+++|...+...|++--   
T Consensus       390 i~lG~llG~i~i~~~g~~~~LG~agG~L~~gl~~g~~~~~~-----~~~~~~p~~a~~~l~~~GL~lFla~vGl~aG~~f  464 (558)
T PRK04972        390 FIIGLMIGMITFQFSNFSFGIGNAAGLLFAGIMLGFLRANH-----PTFGYIPQGALNMVKEFGLMVFMAGVGLSAGSGI  464 (558)
T ss_pred             HHHHHHHcceeEeeCCeeeeccccHHHHHHHHHHHhccccC-----CCceeeCHHHHHHHHHHhHHHHHHHHHHhhhHHH
Confidence            3445555554332    233444678899999999643211     11122222   35778888888888887665   


Q ss_pred             hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhh-ccccHHHHHHHhcccC
Q 018715          103 KKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIF-AATDSVCTLQVLNQDE  172 (351)
Q Consensus       103 ~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgail-saTdp~~v~~il~~~~  172 (351)
                      .+.+++++++.+..+...++++.++..++.++++      ++++.  .+.|++. +-|+|.+.....+..+
T Consensus       465 ~~~~~~~g~~~~~~g~~~t~~~~~~~~~~~~~~~------k~~~~--~~~G~~aG~~t~~~~l~~~~~~~~  527 (558)
T PRK04972        465 NNGLGAVGGQMLIAGLIVSLVPVVICFLFGAYVL------RMNRA--LLFGAIMGARTCAPAMEIISDTAR  527 (558)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCHH--HHHHHHhCCCCCcHHHHHHHhhcC
Confidence            4566777778888777777777777777777777      67776  5677776 5677776655555444

>TIGR00841 bass bile acid transporter

Probab=91.00  E-value=13  Score=34.54  Aligned_cols=22  Identities=23%  Similarity=0.356  Sum_probs=19.9

Q ss_pred             hHHHhhHhhhcCChHHHHHhhH
Q 018715           90 LPPIIFNAGFQVKKKQFFRNFM  111 (351)
Q Consensus        90 L~~ilF~aGl~l~~~~l~~~~~  111 (351)
                      +..++|..|.+++.+++++..+
T Consensus        14 l~~~m~~~G~~l~~~~~~~~~~   35 (286)
T TIGR00841        14 LFLIMFSMGCTLEFEDFKGHLR   35 (286)
T ss_pred             HHHHHHHccCCCcHHHHHHHHh
Confidence            8888999999999999988765

Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.

>PRK03818 putative transporter; Validated

Probab=90.95  E-value=2  Score=44.05  Aligned_cols=105  Identities=12%  Similarity=0.136  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCCh--
Q 018715           26 MNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKK--  103 (351)
Q Consensus        26 l~~~i~lL~~~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~~--  103 (351)
                      ++.+...+.++.++|++=-+..++- ..+.+++|+++|....    .......+...+.+.++++...+|..|++.-.  
T Consensus         8 ~~~l~l~i~lG~~lG~i~i~g~~LG-~~g~L~~gl~~G~~~~----~~~~~~~~~~~~~~~~~gl~lFv~~vGl~~Gp~f   82 (552)
T PRK03818          8 VSILALVAVVGLWIGNIKIRGVGLG-IGGVLFGGIIVGHFVS----QFGLTLDSDMLHFIQEFGLILFVYTIGIQVGPGF   82 (552)
T ss_pred             HHHHHHHHHHHHhhcceEECCCccc-cHHHHHHHHHHhcccc----ccCcccChHHHHHHHHHHHHHHHHHHhhcccHHH
Confidence            3333344445555555222223343 4678888898885321    11111111111346789999999999998885  


Q ss_pred             -HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018715          104 -KQFFRNFMTIMLFGAVGTLISFVIISAGAVHFF  136 (351)
Q Consensus       104 -~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l  136 (351)
                       +.+|++..+...++++.++.+.+ +++..++++
T Consensus        83 ~~~l~~~G~~~~~~~~~~~~~~~~-~~~~~~~~~  115 (552)
T PRK03818         83 FSSLRKSGLRLNLFAVLIVILGGL-VTAILHKLF  115 (552)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence             45666666666777666666544 355556666

>TIGR00808 malonate_madM malonate transporter, MadM subunit

Probab=90.32  E-value=12  Score=32.93  Aligned_cols=83  Identities=20%  Similarity=0.159  Sum_probs=53.9

Q ss_pred             ccCChhHHHHHHHHHHHHHHHhhcCCCCccccc---------cChhHHHHHhhHHHhhHhhhcCChHHHHHhhHHHHHHH
Q 018715           47 RWMNESITALIIGLCTGIVILLTTNGTSSHVLM---------FSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFG  117 (351)
Q Consensus        47 ~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~---------~~~~~~~~i~L~~ilF~aGl~l~~~~l~~~~~~i~~la  117 (351)
                      -|+|.+...++.|+++.+.......++- ...+         +....+.+++.    -..+++.|.++.||....-..--
T Consensus        38 Gr~hgSAIAI~lGL~lAy~gG~~TgG~k-GlaDi~lfsGiglmGGaMlRDfAI----vaTAf~v~~~e~kkaG~~G~vsL  112 (254)
T TIGR00808        38 GKLHGSAIAITMGLVLAYVGGVYTGGEK-GLADIAIFGGFGLMGGAMLRDLAI----VATAFEVDVKEVKKAGKVGMVAL  112 (254)
T ss_pred             CCcchhHHHHHHHHHHHHHcccccCCcc-ccchhhhhcchhhhhhHHHHHHHH----HHHhhcCcHHHHHHcchHHHHHH
Confidence            4688899999999999876554332221 1111         11123445444    56789999999999988766656


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 018715          118 AVGTLISFVIISAGAVH  134 (351)
Q Consensus       118 ~~g~~~~~~~~~~~~~~  134 (351)
                      +.|++++++.....++.
T Consensus       113 ~~G~v~~F~~Ga~vA~a  129 (254)
T TIGR00808       113 LLGCVIPFVIGAMVAWA  129 (254)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            67888887655554443

The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.

>TIGR00832 acr3 arsenical-resistance protein

Probab=88.92  E-value=22  Score=33.89  Aligned_cols=138  Identities=11%  Similarity=0.014  Sum_probs=63.9

Q ss_pred             HhhHHHhhHhhhcCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhhccccHHHHHHH
Q 018715           88 YLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCTLQV  167 (351)
Q Consensus        88 i~L~~ilF~aGl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~~v~~i  167 (351)
                      +++.+++|.-|.+++.+++||..++--. -..+....+...-..++.+-..+    ++....+..|-++.+.-|..+.+.
T Consensus        47 ~~l~~mmf~mgl~L~~~df~~~~~~pk~-~~~~~~~qfvi~Plla~~l~~l~----~~~~p~l~~GliLv~~~Pgg~~S~  121 (328)
T TIGR00832        47 IGLILMMYPPLAKVDYSALGDVFKDPKG-LILSLFINWIIGPFLMFLLAWLF----LRDLFEYIAGLILLGLARCIAMVF  121 (328)
T ss_pred             HHHHHHHHHhhhcCCHHHHHHHHcCchH-HHHHHHHHHHHHHHHHHHHHHHH----cCCCHHHHHHHHHHHhcchHHHHH
Confidence            4555789999999999999887655222 12233333333333333221111    122223555555554444444433


Q ss_pred             h----cccCCchhHHHHHHHhhhhhHHHHHHHHHHHHhhhh--------ccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018715          168 L----NQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLS--------HINLSIALKFVGSFFYLFIASTMLGVIAGL  234 (351)
Q Consensus       168 l----~~~~~~~l~~~l~gEs~lnD~~aivlf~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~G~~~G~  234 (351)
                      .    .+.+.+ +...   -..+|...+.++.-.......+        ...+.+......+.+...+.=+++|...-.
T Consensus       122 v~T~lAkGnva-lsv~---lt~~stLl~~~~~P~l~~ll~~~~~~~~~~~~v~v~~~~~~~~l~~~v~lPlvlG~~lr~  196 (328)
T TIGR00832       122 VWNQLAKGDPE-YTLV---LVAVNSLFQVFLYAPLAWLLLGVSPIWLGLTVITVPWETIAKSVLIYLGIPLIAGILTRY  196 (328)
T ss_pred             HHHHHcCCCHH-HHHH---HHHHHHHHHHHHHHHHHHHHHhcCccccccceeeeCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3    222222 2222   2256666666655433322111        001123444455555555555555554433

The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.

>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom

Probab=88.83  E-value=9.1  Score=37.50  Aligned_cols=153  Identities=16%  Similarity=0.134  Sum_probs=89.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhc-C
Q 018715           23 VVSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQ-V  101 (351)
Q Consensus        23 ~~~l~~~i~lL~~~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~-l  101 (351)
                      ...+..-..+-+....+|.++++..++|.....++.-.++=. ....|+...+. ...-.+.+..-..+++++-.|.. +
T Consensus       245 ~~~~g~Gllla~~~y~~G~ll~~~i~ih~~a~mIi~~~i~K~-~~lvP~~~e~~-a~~~~~f~~~~lt~~lLvgiGv~~~  322 (414)
T PF03390_consen  245 FSDMGAGLLLACSFYILGVLLSKLIGIHAYAWMIILVAIVKA-FGLVPESLEEG-AKQWYKFFSKNLTWPLLVGIGVAYT  322 (414)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH-hCcCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhC
Confidence            344444444555566778888887789988776655444432 11111111111 11112446778899999999998 9


Q ss_pred             ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhh-hhc---cccHHHHHHHhcccC-Cc--
Q 018715          102 KKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGA-IFA---ATDSVCTLQVLNQDE-TP--  174 (351)
Q Consensus       102 ~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllga-ils---aTdp~~v~~il~~~~-~~--  174 (351)
                      |++++.+.......+-...+++.....+.....++      ++-..++-+-+. |.+   -|.=+++++--++.+ -|  
T Consensus       323 ~l~~l~~a~t~~~vv~~~~~Vl~~~~~a~~vG~l~------g~YPvEsAItaGLC~an~GGtGDvAVLsAa~RM~LmpFA  396 (414)
T PF03390_consen  323 DLNDLIAAFTPQYVVIVLATVLGAVIGAFLVGKLV------GFYPVESAITAGLCMANMGGTGDVAVLSAANRMELMPFA  396 (414)
T ss_pred             cHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHh------CCChHHHHHHhhhcccCCCCCCcchheehhhhcccccHH
Confidence            99999998877666666666666666665555555      565555554444 332   243444455555555 24  


Q ss_pred             hhHHHHHHH
Q 018715          175 LLYSLVFGE  183 (351)
Q Consensus       175 ~l~~~l~gE  183 (351)
                      ++.+.+=|.
T Consensus       397 QIstRiGGA  405 (414)
T PF03390_consen  397 QISTRIGGA  405 (414)
T ss_pred             HHHHhhhhH
Confidence            455555444

They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane

>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]

Probab=88.43  E-value=13  Score=35.62  Aligned_cols=107  Identities=10%  Similarity=0.049  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCChHHHHHhhH
Q 018715           32 LLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFM  111 (351)
Q Consensus        32 lL~~~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~~~~l~~~~~  111 (351)
                      ++....+.+..+.|+.|+|.  +.++..+++|.......    ....+ -|+....++-..+--..|.++|...+++..+
T Consensus       192 ~l~~~~~~~g~l~~~lr~Pa--~~ll~~l~l~a~v~~~~----~~~~~-lP~wl~~va~~~iG~~IG~~f~~~~l~~~~r  264 (352)
T COG3180         192 LLILAALLGGLLGKLLRFPA--PTLLGPLLLGAIVHFGG----GITIQ-LPAWLLAVAQALIGALIGSRFDRSILREAKR  264 (352)
T ss_pred             HHHHHHHHHHHHHHHHcCCc--HHHHHHHHHHHHhhccc----ceeee-CCHHHHHHHHHHHHHHHcccccHHHHHHhHh
Confidence            34444555666666688885  46667777776544222    11122 2456666666677777899999888877666


Q ss_pred             HHH--HHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHH
Q 018715          112 TIM--LFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLA  151 (351)
Q Consensus       112 ~i~--~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~all  151 (351)
                      ...  .+..++..+-+...+...+++.      +.|+.++++
T Consensus       265 ~~~~~~v~ii~l~~~~~~~a~ll~~~~------~i~~~ta~L  300 (352)
T COG3180         265 LLPAILVSIIALMAIAAGMAGLLSWLT------GIDLNTAYL  300 (352)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHhc------CCCHHHHHH
Confidence            532  3333444333344444444443      788887765

>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter

Probab=88.03  E-value=9.8  Score=39.10  Aligned_cols=106  Identities=22%  Similarity=0.148  Sum_probs=67.6

Q ss_pred             hhHHHHHHHHHHHHHHHhhcCCCCccccccCh---hHHHHHhhHHHhhHhhhcCCh---HHHHHhhHHHHHHHHHHHHHH
Q 018715           51 ESITALIIGLCTGIVILLTTNGTSSHVLMFSE---DLFFIYLLPPIIFNAGFQVKK---KQFFRNFMTIMLFGAVGTLIS  124 (351)
Q Consensus        51 ~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~---~~~~~i~L~~ilF~aGl~l~~---~~l~~~~~~i~~la~~g~~~~  124 (351)
                      ...+.+++|+++|......+     ...++++   ..+.++++...++..|++--.   +.+|+++.+...++..-++.+
T Consensus       417 ~~~g~l~~gl~~g~~~~~~~-----~~~~~p~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~~~~~~~  491 (562)
T TIGR03802       417 TGGGALISGLVFGWLRSKHP-----TFGNIPSSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGIVVTILP  491 (562)
T ss_pred             hhHHHHHHHHHHHHhcccCC-----cceecCHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            44577888888886432111     1112333   247789999888988888774   456777777777777777777


Q ss_pred             HHHHHHHHHHHHhhcccCCCCHHHHHHHhhhh-ccccHHHHHHHhc
Q 018715          125 FVIISAGAVHFFKQMNIGTLKIGDYLAIGAIF-AATDSVCTLQVLN  169 (351)
Q Consensus       125 ~~~~~~~~~~~l~~~~~~~~~~~~alllgail-saTdp~~v~~il~  169 (351)
                      .++..+..++++      ++++.  ...|++. +-|+|.+.....+
T Consensus       492 ~~~~~~~~~~~~------~~~~~--~~~G~~aG~~t~t~~l~~a~~  529 (562)
T TIGR03802       492 LIITMLIGKYVL------KYDPA--LLLGALAGARTATPALGAVLE  529 (562)
T ss_pred             HHHHHHHHHHHh------CCCHH--HHHHHhhccCCCcHHHHHHHH
Confidence            666666665666      66655  5667665 4566666544443

All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).

>TIGR00659 conserved hypothetical protein TIGR00659

Probab=87.84  E-value=14  Score=33.29  Aligned_cols=103  Identities=17%  Similarity=0.094  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHH--HhhHhhhcCCh
Q 018715           26 MNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPP--IIFNAGFQVKK  103 (351)
Q Consensus        26 l~~~i~lL~~~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~--ilF~aGl~l~~  103 (351)
                      ++..+.+-+.....++.+.||.+-|-.-+.++.=+++-..+... + .+.+......+.+. ..|.|  .-+..-+.-++
T Consensus         4 ~~~~l~lTl~~y~~~~~l~~r~~~~~lnPvl~~~~~ii~~L~~~-~-i~Y~~Y~~g~~~l~-~lLgPAtVALAvPLY~~~   80 (226)
T TIGR00659         4 IIVSLFLTLLVFFGAKKLYQRFKRPYLNPLLLTPLVLVGILLLV-G-IPYESYMLGGGVIN-DLLGPAVVALAIPLYKQL   80 (226)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHh-C-CCHHHHHHhhHHHH-HhhHHHHHHHHHHHHHhH
Confidence            33444455566677788777666654444433322222222221 1 11111112223322 22222  23334445678


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 018715          104 KQFFRNFMTIMLFGAVGTLISFVIISAG  131 (351)
Q Consensus       104 ~~l~~~~~~i~~la~~g~~~~~~~~~~~  131 (351)
                      +.+||++++++.-...|.+.+.......
T Consensus        81 ~~lk~~~~~Il~~~~~G~~~~~~s~~~l  108 (226)
T TIGR00659        81 PQIKKYWKEIILNVAVGSVIAIISGTLL  108 (226)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998887677776654433333

Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.

>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi

Probab=87.45  E-value=9.3  Score=35.90  Aligned_cols=129  Identities=16%  Similarity=0.090  Sum_probs=79.4

Q ss_pred             HhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHH--HHhhHHHhhHhhhcCChHHHHHhhHHHHHHHHHH
Q 018715           43 LEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFF--IYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVG  120 (351)
Q Consensus        43 l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~--~i~L~~ilF~aGl~l~~~~l~~~~~~i~~la~~g  120 (351)
                      .++..|+|.  +.+++=+++|....-+.|+..+..=.+....+.  .-.+...+|-.|-++|.|...+..|+-..+...=
T Consensus         4 ~~~i~kiPG--G~mvVPLllgalinTf~P~~l~~iG~fT~al~~G~~~iig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K   81 (314)
T PF03812_consen    4 KKTIEKIPG--GMMVVPLLLGALINTFFPNALEIIGGFTTALFTGANPIIGVFLFCMGAQIDLKSAGKVLKKGGVLLLVK   81 (314)
T ss_pred             hHhhccCCC--ceeHHHHHHHHHHHhcCCChhhccCcHHHHHHcchHHHHHHHHHHhccccchhhhhHHHHhhhHHHHHH
Confidence            334456774  455566666665554433321111122222221  3456677899999999999988888877766666


Q ss_pred             HHHHHHHHHHHHHHHHhhcccC-C-CCHHHHHHHhhhhccccHHHHHHHhcccCCc
Q 018715          121 TLISFVIISAGAVHFFKQMNIG-T-LKIGDYLAIGAIFAATDSVCTLQVLNQDETP  174 (351)
Q Consensus       121 ~~~~~~~~~~~~~~~l~~~~~~-~-~~~~~alllgailsaTdp~~v~~il~~~~~~  174 (351)
                      +.+. .++++....+++.-|++ + +--..++.+=+.++.+++..-.++.+|++.+
T Consensus        82 ~~~~-~~lgl~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~~~yGd~  136 (314)
T PF03812_consen   82 FIIG-ALLGLLVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALMGQYGDE  136 (314)
T ss_pred             HHHH-HHHHHHHHHHcCccccccccccchHHHHHHHHHhcCCHHHHHHHHHHhCCH
Confidence            6655 45556655566432220 1 1223456677889999999999999999976

There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane

>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate

Probab=86.99  E-value=22  Score=34.53  Aligned_cols=97  Identities=14%  Similarity=0.083  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHhh-cccCChhHHHHHHHHHHHHHHHhhcCCCCccccccCh---hHHHHHhhHHHhhHhhhcCChHHHHHh
Q 018715           34 CACIVIGHLLEE-NRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSE---DLFFIYLLPPIIFNAGFQVKKKQFFRN  109 (351)
Q Consensus        34 ~~~~~~~~~l~~-~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~---~~~~~i~L~~ilF~aGl~l~~~~l~~~  109 (351)
                      .++..+.+.+++ ...+|.-+..++.|+++-.........      +.|.   +.+.++.+-+.+..+=..+|...+.+.
T Consensus       231 ~~G~~i~~~l~~~~~~lP~f~~ami~g~ivrn~~~~~~~~------~id~~~i~~I~~~sL~~fl~~almsl~l~~l~~~  304 (368)
T PF03616_consen  231 GLGYIISALLKKIGLTLPLFVGAMIVGIIVRNILDKTGKY------KIDRKTIDRISGISLDLFLAMALMSLKLWVLADY  304 (368)
T ss_pred             HHHHHHHHHHHHcCcCCchHHHHHHHHHHHHHHHHHhCcc------cCCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            334444444443 456888777887777776554322211      1232   346778888888888889999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018715          110 FMTIMLFGAVGTLISFVIISAGAVHFF  136 (351)
Q Consensus       110 ~~~i~~la~~g~~~~~~~~~~~~~~~l  136 (351)
                      ..|.+.+-..+++++....-++.+-.+
T Consensus       305 a~Plliil~~q~i~~~~f~~fv~fr~~  331 (368)
T PF03616_consen  305 ALPLLIILAVQTILMVLFAYFVTFRVM  331 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            999988777887776544433333333

The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane

>PRK04125 murein hydrolase regulator LrgA; Provisional

Probab=86.98  E-value=12  Score=31.10  Aligned_cols=110  Identities=11%  Similarity=-0.023  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHH-HHhhHHHhhHhhhcCC
Q 018715           24 VSMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFF-IYLLPPIIFNAGFQVK  102 (351)
Q Consensus        24 ~~l~~~i~lL~~~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~-~i~L~~ilF~aGl~l~  102 (351)
                      ..+...+.+++.+...|+.+.+-.++|-+-.  ++|+++=...+...... .+..+-..+.+. +..+-++=-..|.=..
T Consensus         7 ~~~l~ql~ill~~~~lGe~i~~ll~lPiPGs--ViGMlLL~l~L~~~~vk-~~~v~~~a~~LL~~m~LfFVPagVGim~~   83 (141)
T PRK04125          7 YSFLHQAFIFAAIMLISNIIASFLPIPMPAS--VIGLVLLFVLLCTKVVK-LEQVESLGTALTNNIGFLFVPSGISVINS   83 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH--HHHHHHHHHHHHhCCcC-HHHHHHHHHHHHHHHHHHHhhhHhHHHHh
Confidence            3444556677778888888887666553322  23433322222111111 111111112222 2222222223466667


Q ss_pred             hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018715          103 KKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFF  136 (351)
Q Consensus       103 ~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l  136 (351)
                      ++.+++++.+++...+++++++..+++....++.
T Consensus        84 ~~ll~~~~~~Il~~ivvSTllvl~vtg~v~~~l~  117 (141)
T PRK04125         84 LGVMSQYPVQIIGVIIVATILLLACTGLFSQFIL  117 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8899999999988888888888777776666543

>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]

Probab=86.41  E-value=30  Score=32.79  Aligned_cols=97  Identities=18%  Similarity=0.170  Sum_probs=59.6

Q ss_pred             HHHhhHhhhcCChHHHHHh---hHHHH---HHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHh-hhhccccHHH
Q 018715           91 PPIIFNAGFQVKKKQFFRN---FMTIM---LFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIG-AIFAATDSVC  163 (351)
Q Consensus        91 ~~ilF~aGl~l~~~~l~~~---~~~i~---~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllg-ailsaTdp~~  163 (351)
                      .+..+..|+|++++.+.-+   +++..   .-+..|++.++     ..|+.++      .+-+.. .=| ++-++||.+-
T Consensus        72 AvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PA-----liy~~~n------~~~p~~-~~GWaIP~ATDiAF  139 (390)
T COG3004          72 AVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPA-----LIYLALN------AGDPAT-LEGWAIPMATDIAF  139 (390)
T ss_pred             HHHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhh-----hHhheee------cCChhh-hcCcCcccHHHHHH
Confidence            3344567898887766433   33322   22344555443     2344442      111111 111 6678999999


Q ss_pred             HHHHhccc--CCc-hhHHHHHHHhhhhhHHHHHHHHHHH
Q 018715          164 TLQVLNQD--ETP-LLYSLVFGEGVVNDATSVVLFNAIQ  199 (351)
Q Consensus       164 v~~il~~~--~~~-~l~~~l~gEs~lnD~~aivlf~~~~  199 (351)
                      ...++.-.  ++| .++.-+..-+++||.-+++.-..+.
T Consensus       140 AlGvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFY  178 (390)
T COG3004         140 ALGVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFY  178 (390)
T ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhh
Confidence            99998754  467 5899999999999988887766653

>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain

Probab=85.98  E-value=13  Score=31.35  Aligned_cols=111  Identities=12%  Similarity=0.143  Sum_probs=62.0

Q ss_pred             CChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCChH---HHHHhh-HHHHHHHHHHHHHH
Q 018715           49 MNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKK---QFFRNF-MTIMLFGAVGTLIS  124 (351)
Q Consensus        49 lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~~~---~l~~~~-~~i~~la~~g~~~~  124 (351)
                      +-...+.+++|+++|......+  .......-.++.+.++++.+.++..|++.-.+   .+||+. ...+.+....++++
T Consensus        21 LG~~~G~L~vgL~~G~~~~~~p--~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~   98 (154)
T TIGR01625        21 LGNAGGVLFVGLLLGHFGATGP--LTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVP   98 (154)
T ss_pred             ecccHHHHHHHHHHHhccccCC--cceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            3346788999999996421110  00011111234577899999999999988754   455543 22333334444444


Q ss_pred             HHHHHHHHHHHHhhcccCCCCHHHHHHHhhhh-ccccHHHHHHHhc
Q 018715          125 FVIISAGAVHFFKQMNIGTLKIGDYLAIGAIF-AATDSVCTLQVLN  169 (351)
Q Consensus       125 ~~~~~~~~~~~l~~~~~~~~~~~~alllgail-saTdp~~v~~il~  169 (351)
                      ..+..+..++++      ++++.  ...|.+. +-|+|.+.....+
T Consensus        99 ~~~~~~~~~~~~------~~~~~--~~~G~~aGa~T~tpaL~aa~~  136 (154)
T TIGR01625        99 TLLVAVALIKLL------RINYA--LTAGMLAGATTNTPALDAAND  136 (154)
T ss_pred             HHHHHHHHHHHh------CCCHH--HHHHHHhccccChHHHHHHHH
Confidence            455555666666      66654  5666665 4455555444443

This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.

>PRK04972 putative transporter; Provisional

Probab=85.77  E-value=7.7  Score=39.83  Aligned_cols=97  Identities=22%  Similarity=0.282  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCCh---HHHHH
Q 018715           32 LLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKK---KQFFR  108 (351)
Q Consensus        32 lL~~~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~~---~~l~~  108 (351)
                      .+.++..+|++=-+..++-...+.+++|+++|...           .+. |+...++++.+.+|..|++.-.   +.+||
T Consensus        20 ~i~lG~~lG~i~~~~~~LG~~~g~L~vgl~~g~~~-----------~~~-~~~~~~~gl~lF~~~vG~~~Gp~F~~~l~~   87 (558)
T PRK04972         20 VLALGLCLGKLRLGSIQLGNSIGVLVVSLLLGQQH-----------FSI-NTDALNLGFMLFIFCVGVEAGPNFFSIFFR   87 (558)
T ss_pred             HHHHHHhhhceEEeeEecCcchHHHHHHHHHHhCC-----------CCC-ChHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            34445555554434456767779999999999531           112 2335688898899999998874   45566


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHH
Q 018715          109 NFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIG  147 (351)
Q Consensus       109 ~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~  147 (351)
                      +..+...+++..++.+.++ ++...+++      ++++.
T Consensus        88 ~g~~~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~  119 (558)
T PRK04972         88 DGKNYLMLALVMVGSALVI-ALGLGKLF------GWDIG  119 (558)
T ss_pred             hhHHHHHHHHHHHHHHHHH-HHHHHHHh------CCCHH
Confidence            6666666676666655433 33444445      56654

>KOG3826 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]

Probab=84.92  E-value=1.5  Score=39.14  Aligned_cols=78  Identities=9%  Similarity=-0.027  Sum_probs=63.8

Q ss_pred             HHHHhhHHHhhHhhhcCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhhccccHHHH
Q 018715           85 FFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIFAATDSVCT  164 (351)
Q Consensus        85 ~~~i~L~~ilF~aGl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgailsaTdp~~v  164 (351)
                      ...+.+-++.-++|++++.|.+++.......+.+......+-.-+...++.+      +.+|.++++.|.+..+..+...
T Consensus       159 l~t~a~~I~~ik~gLgt~~r~~~nv~~vc~~~~v~~~~~~a~a~~~~S~~~l------~~~ii~~~l~g~v~~~i~~~~~  232 (252)
T KOG3826|consen  159 LRTVALTIIKIKAGLGTLPRAPENVLAVCCVLMVLPSIIEASAPAVTSHFLL------AGPIIWAFLLGIVIGSILWRFP  232 (252)
T ss_pred             hhhccchHHHHHhhhcccccchhhhhHHHhhhhhhhhhhccccHHHHHHHHh------ccchHHHhccccceeeeecCCc
Confidence            5677788888999999999999999998888887777777666666677776      8999999999999998887665


Q ss_pred             HHHh
Q 018715          165 LQVL  168 (351)
Q Consensus       165 ~~il  168 (351)
                      .+=.
T Consensus       233 r~~~  236 (252)
T KOG3826|consen  233 RPDY  236 (252)
T ss_pred             cccc
Confidence            4433

>PRK01658 holin-like protein; Validated

Probab=84.16  E-value=20  Score=28.92  Aligned_cols=109  Identities=13%  Similarity=0.121  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHH-HHhhHHHhhHhhhcCCh
Q 018715           25 SMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFF-IYLLPPIIFNAGFQVKK  103 (351)
Q Consensus        25 ~l~~~i~lL~~~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~-~i~L~~ilF~aGl~l~~  103 (351)
                      .+...+.+++.+...|+.+.+..++|-+-.  ++|+++=.......... .+..+...+.+. +..+-++=-..|.=-..
T Consensus         5 ~~l~~l~il~~~~~~G~~i~~~l~lpiPGs--ViGmlLL~~~L~~~~ik-~~~v~~~a~~Ll~~m~llFVPa~VGi~~~~   81 (122)
T PRK01658          5 KLLVQIALLYVFALVGTWIQEQLHLPIPGS--IIGIFLLLLLLSFKILK-LKWIELGAETLLAELPLFFIPSAVGVMNYG   81 (122)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHHhCCcC-HHHHHHHHHHHHHHHHHHHHHhhhHHHHhH
Confidence            344456677777888888887666553322  24443322222111111 111221122222 22222222234666667


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018715          104 KQFFRNFMTIMLFGAVGTLISFVIISAGAVHFF  136 (351)
Q Consensus       104 ~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l  136 (351)
                      +.+++++.++....+.+++++..+++....++.
T Consensus        82 ~ll~~~~~~il~~ivvsT~l~l~vtg~~~~~l~  114 (122)
T PRK01658         82 DFLSSKGISLFLVVVISTFVVMIVTGYLTQLLA  114 (122)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999888999888877777766554

>PRK12460 2-keto-3-deoxygluconate permease; Provisional

Probab=83.86  E-value=25  Score=33.13  Aligned_cols=58  Identities=14%  Similarity=0.100  Sum_probs=42.0

Q ss_pred             hhHHHhhHhhhcCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHh
Q 018715           89 LLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIG  153 (351)
Q Consensus        89 ~L~~ilF~aGl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllg  153 (351)
                      .+|+..|.-|.++|++++.+.+.+.+.+++..+..+....-+.- -++      +.+-..+.+.|
T Consensus       197 ~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~~i~-rll------g~~~~~g~li~  254 (312)
T PRK12460        197 LIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNIFAD-RLV------GGTGIAGAAAS  254 (312)
T ss_pred             eHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHHHHH-HHh------CCChhHHHHHH
Confidence            67777888999999999999999988888777766544333222 233      56666677776

>COG2985 Predicted permease [General function prediction only]

Probab=83.60  E-value=11  Score=37.66  Aligned_cols=137  Identities=18%  Similarity=0.166  Sum_probs=77.7

Q ss_pred             cCccchHHHHHHHHHHHHHHHHHHHHhh-----cccCChhHHHHHHHHHHHHHHHhhcCCCCccccccCh---hHHHHHh
Q 018715           18 SDHKSVVSMNLFVALLCACIVIGHLLEE-----NRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSE---DLFFIYL   89 (351)
Q Consensus        18 ~~~~~~~~l~~~i~lL~~~~~~~~~l~~-----~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~---~~~~~i~   89 (351)
                      +.|.+..+++-+.+-+.++.++|.+---     ..++-..-+.+++++++|.+-...     ...+.+++   ..+.+++
T Consensus       359 ~~~lq~~~lLp~~ig~~LGvllGsIp~~~pg~~s~~LG~aGGpLivaLiLG~ig~iG-----pl~w~mP~~An~~lrelG  433 (544)
T COG2985         359 QIKLQQVDLLPFAIGLGLGVLLGSIPFPLPGPGSFKLGNAGGPLIVALILGFIGAIG-----PLTWFMPPGALLALRELG  433 (544)
T ss_pred             cceeeeeccHHHHHHHHHHHhheeeEeccCCCceEeecccccHHHHHHHHHHhcccC-----ceEEEcChhHHHHHHHHH
Confidence            3444555555555555555555543210     122224557788888888653211     11233333   2245655


Q ss_pred             hHHHhhHhhhcCC-----hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhh-ccccHHH
Q 018715           90 LPPIIFNAGFQVK-----KKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIF-AATDSVC  163 (351)
Q Consensus        90 L~~ilF~aGl~l~-----~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgail-saTdp~~  163 (351)
                      +.  +|.+|..+|     .+.+-...-++...+.+-++++.+.++...++++      +.+|.  .+.|++. +-|||.+
T Consensus       434 l~--lFLA~VGl~aG~~f~~tL~~~Gl~~ig~g~lit~vp~i~~~llg~~v~------kmn~~--~l~G~laGs~T~ppa  503 (544)
T COG2985         434 LA--LFLAGVGLSAGSGFVNTLTGSGLQIIGYGALVTLVPVIIVFLLGRYVL------KMNWL--LLCGALAGSMTDPPA  503 (544)
T ss_pred             HH--HHHHhhccccccchHhhhcccchhhhhHHHHHHHHHHHHHHHHHHHHH------hccHH--HHhhHHhcCCCChHH
Confidence            54  455655555     2333445556666777777777777777888887      67776  5778777 6688877


Q ss_pred             HHHHhcc
Q 018715          164 TLQVLNQ  170 (351)
Q Consensus       164 v~~il~~  170 (351)
                      . +...+
T Consensus       504 L-a~and  509 (544)
T COG2985         504 L-AFAND  509 (544)
T ss_pred             H-HHHhh
Confidence            4 44433

>PRK05326 potassium/proton antiporter; Reviewed

Probab=82.72  E-value=8  Score=39.68  Aligned_cols=32  Identities=9%  Similarity=0.148  Sum_probs=21.1

Q ss_pred             HHHHhhHHHhhHhhhcCChHHHHHhhHHHHHH
Q 018715           85 FFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLF  116 (351)
Q Consensus        85 ~~~i~L~~ilF~aGl~l~~~~l~~~~~~i~~l  116 (351)
                      +..++.++..+..|+.+|++.+.+.....+.+
T Consensus       275 l~~l~~~~~Fv~lGl~~~~~~l~~~~~~~l~i  306 (562)
T PRK05326        275 LAWLAQIGMFLVLGLLVTPSRLLDIALPALLL  306 (562)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            45566666666778888888877655444433

>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species

Probab=82.33  E-value=51  Score=32.09  Aligned_cols=86  Identities=17%  Similarity=0.211  Sum_probs=52.5

Q ss_pred             ccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhcCChHHHHHhhHHHHHHHHHHHHHHHH
Q 018715           47 RWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAVGTLISFV  126 (351)
Q Consensus        47 ~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~l~~~~l~~~~~~i~~la~~g~~~~~~  126 (351)
                      +++|..+...+.++++..... +.++....    --+...++.+|.-++.-=++.|+|+++|..++.+. ++....++.+
T Consensus        23 ~~l~~~vl~~~~~~~lsnlgl-i~~p~~s~----~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~-~F~~~~~g~v   96 (378)
T PF05684_consen   23 KYLPGAVLCYLLGMLLSNLGL-IDSPASSP----VYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLL-AFLIGAVGTV   96 (378)
T ss_pred             hhcCHHHHHHHHHHHHHHCCC-cCCCCcch----HHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHH-HHHHHHHHHH
Confidence            467777777777777764321 11111111    11446777888888888889999999999887654 3333334445


Q ss_pred             HHHHHHHHHHhh
Q 018715          127 IISAGAVHFFKQ  138 (351)
Q Consensus       127 ~~~~~~~~~l~~  138 (351)
                      +.+.+.+++++.
T Consensus        97 iG~~va~~l~~~  108 (378)
T PF05684_consen   97 IGAVVAFLLFGG  108 (378)
T ss_pred             HHHHHHHHHHhh
Confidence            555566666654

>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance []

Probab=81.50  E-value=25  Score=31.41  Aligned_cols=95  Identities=20%  Similarity=0.172  Sum_probs=49.1

Q ss_pred             HHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHH--hhHhhhcCChHHHHHhhHHH
Q 018715           36 CIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPI--IFNAGFQVKKKQFFRNFMTI  113 (351)
Q Consensus        36 ~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~i--lF~aGl~l~~~~l~~~~~~i  113 (351)
                      +...++.+.||.+-|-.-+.++.-+++-..+....  .+.+...-..|++ ...|.|-  -+.--+.=+++.+||+++++
T Consensus         4 ~y~~~~~l~~r~~~~~l~P~l~a~~~ii~~L~~~~--i~y~~Y~~gg~~l-~~lLgPatVALAvPLY~~~~~l~~~~~~i   80 (215)
T PF04172_consen    4 AYLIAKWLYKRFKSPFLNPLLIAIVLIIAFLLLTG--IPYEDYMQGGDIL-SFLLGPATVALAVPLYRQRRLLKKNWIPI   80 (215)
T ss_pred             HHHHHHHHHHHcCCCcccHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566777776666655455444444333332222  1111122223333 2223332  23333444688999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 018715          114 MLFGAVGTLISFVIISAGAV  133 (351)
Q Consensus       114 ~~la~~g~~~~~~~~~~~~~  133 (351)
                      +.-...|.+.+.......++
T Consensus        81 l~~~~~g~~~~~~~~~~l~~  100 (215)
T PF04172_consen   81 LVGVLVGSLVSIFSAVLLAR  100 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            88777787766544443333

>PRK01821 hypothetical protein; Provisional

Probab=81.37  E-value=28  Score=28.54  Aligned_cols=109  Identities=16%  Similarity=0.128  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHH-HHhhHHHhhHhhhcCCh
Q 018715           25 SMNLFVALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFF-IYLLPPIIFNAGFQVKK  103 (351)
Q Consensus        25 ~l~~~i~lL~~~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~-~i~L~~ilF~aGl~l~~  103 (351)
                      .+...+.+++.+...|+.+.+..++|-+-.  ++|+++=.......... .+..+-..+.+. +..+-++=-..|.=-..
T Consensus        10 ~~l~~l~ill~~~~~Ge~i~~~l~lpiPGs--ViGmlLLf~~L~~~~vk-~~~v~~~a~~LL~~m~LfFVPa~VGim~~~   86 (133)
T PRK01821         10 QYLRAFVLIYACLYAGIFIASLLPITIPGS--IIGMLILFVLLALQILP-AKWVKPGCSLLIRYMALLFVPIGVGVMQYY   86 (133)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCCcHH--HHHHHHHHHHHHhCCcC-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            444455667777788888887666553322  23433322222111111 111111122222 22222222234555667


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018715          104 KQFFRNFMTIMLFGAVGTLISFVIISAGAVHFF  136 (351)
Q Consensus       104 ~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l  136 (351)
                      +.+++++.++....+++++++..+++....++.
T Consensus        87 ~ll~~~~~~il~~ivvST~lvl~vtg~~~~~l~  119 (133)
T PRK01821         87 DLLRAQFGPIVVSCIVSTLVVLLVVGWSSHYVH  119 (133)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999988888888888777776665543

>COG3493 CitS Na+/citrate symporter [Energy production and conversion]

Probab=81.20  E-value=55  Score=31.73  Aligned_cols=135  Identities=14%  Similarity=0.151  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhhc-CChHHHHHh
Q 018715           31 ALLCACIVIGHLLEENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGFQ-VKKKQFFRN  109 (351)
Q Consensus        31 ~lL~~~~~~~~~l~~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl~-l~~~~l~~~  109 (351)
                      .+-+.....++++++...+|.....+++=..+=-.....++...+...++ .+.+..=..=++|+..|.. +|++++-+.
T Consensus       271 llA~~lf~~g~il~kf~~~P~~va~MIil~a~lk~~nlvp~~i~~GA~~l-~~F~sk~~t~~Lm~giGv~ytdl~ev~~a  349 (438)
T COG3493         271 LLACTLFMAGGILGKFIGLPGPVAFMIILVAILKAANLVPKEIEEGAKQL-SQFFSKNLTWPLMAGIGVAYTDLNEVAAA  349 (438)
T ss_pred             HHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhCcCCHHHHHHHHHH-HHHHHHhhHHHHHHhhhhccccHHHHHHH
Confidence            34445567788888766688666333221111111111111111111111 1335555567888999996 999999887


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC-CHHHHHHHhhhhc---cccHHHHHHHhcccC
Q 018715          110 FMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTL-KIGDYLAIGAIFA---ATDSVCTLQVLNQDE  172 (351)
Q Consensus       110 ~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~-~~~~alllgails---aTdp~~v~~il~~~~  172 (351)
                      ......+....+++.+...++...+++      ++ |...|..=|.|.+   -|.-+++++--++.+
T Consensus       350 lt~~~vii~~~vVl~~i~~~~f~grl~------~~YPVEaAI~aglC~a~~GGtGDvaVLsAa~RM~  410 (438)
T COG3493         350 LTWQNVIIALSVVLGAILGGAFVGRLM------GFYPVEAAITAGLCMANMGGTGDVAVLSAADRME  410 (438)
T ss_pred             hchhHHHHHHHHHHHHHHHHHHHHHHh------cCCchHHHHHHhHHhcCCCCCCchHHhhhcchhc
Confidence            665555555566666666665555555      44 4455555556664   355555555555554

>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]

Probab=81.10  E-value=57  Score=31.79  Aligned_cols=161  Identities=13%  Similarity=0.126  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHHHHHHH----Hh-hcccCChhHHHHHHHHHHHHHHHhhcCCCCccccccChhHHHHHhhHHHhhHhhh
Q 018715           25 SMNLFVALLCACIVIGHL----LE-ENRWMNESITALIIGLCTGIVILLTTNGTSSHVLMFSEDLFFIYLLPPIIFNAGF   99 (351)
Q Consensus        25 ~l~~~i~lL~~~~~~~~~----l~-~~~~lP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~aGl   99 (351)
                      .+...+.+++++...|+.    ++ ....+|.-...+.+|+++=.+......   ++..+-.-+.+.++.+...+=.+=.
T Consensus       219 ~l~~~~~~i~i~~~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~---~~v~~~~v~~ig~vsL~lflamALm  295 (404)
T COG0786         219 PLIETLAIIAICLAVGKIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKK---YRVFRRAVDVIGNVSLSLFLAMALM  295 (404)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhcc---ccccHHHHHHHhhhHHHHHHHHHHH
Confidence            333334444444444444    44 345699998999898888765543221   1111111245778888877777777


Q ss_pred             cCChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHH----Hhhhhccc--cHHHHHHHhcccCC
Q 018715          100 QVKKKQFFRNFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLA----IGAIFAAT--DSVCTLQVLNQDET  173 (351)
Q Consensus       100 ~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~all----lgailsaT--dp~~v~~il~~~~~  173 (351)
                      ++++-++-+.+-+.+.+-.++++.......++.+-.+      +-++..+.+    .|--+.+|  .-+-..++-++.|.
T Consensus       296 SlkLweL~~l~lpl~viL~vQ~i~m~lfa~fvtfr~m------G~~YdAaV~~~G~~G~gLGATPtAianM~av~~k~g~  369 (404)
T COG0786         296 SLKLWELADLALPLLVILAVQTIVMALFAIFVTFRLM------GKNYDAAVLAAGHCGFGLGATPTAIANMQAVTEKFGP  369 (404)
T ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHh------CcchhHHHHhcccccCccCCcHHHHHhhhcchhhcCC
Confidence            8888888888888777666676654333322222222      445555544    23334444  33333344455564


Q ss_pred             c-h--hHHHHHHHhhhhhHHHHHHH
Q 018715          174 P-L--LYSLVFGEGVVNDATSVVLF  195 (351)
Q Consensus       174 ~-~--l~~~l~gEs~lnD~~aivlf  195 (351)
                      + +  +..=+.| +.+-|.+....-
T Consensus       370 S~kAf~ivPiVG-Affid~ina~ii  393 (404)
T COG0786         370 SHKAFIVVPIVG-AFFIDIINALII  393 (404)
T ss_pred             CceeeEEeehHH-HHHHHHHHHHHH
Confidence            4 3  2222456 778887774433

>PRK03818 putative transporter; Validated

Probab=80.24  E-value=19  Score=36.91  Aligned_cols=104  Identities=12%  Similarity=0.050  Sum_probs=63.7

Q ss_pred             hHHHHHHHHHHHHHHHhhcCCCCccccccC---hhHHHHHhhHHHhhHhhhcCChHHH---HH-hhHHHHHHHHHHHHHH
Q 018715           52 SITALIIGLCTGIVILLTTNGTSSHVLMFS---EDLFFIYLLPPIIFNAGFQVKKKQF---FR-NFMTIMLFGAVGTLIS  124 (351)
Q Consensus        52 ~~~~ll~GillG~~~~~~~~~~~~~~~~~~---~~~~~~i~L~~ilF~aGl~l~~~~l---~~-~~~~i~~la~~g~~~~  124 (351)
                      ..+.+++|+++|..-...     .....++   +..+.+++|.+.+...|++--.+-+   ++ .+.....++...++++
T Consensus       403 ~~G~L~~gl~~g~~~~~~-----~~~~~~p~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~~G~~~~~~g~~v~~~~  477 (552)
T PRK03818        403 AGGPLIVALILGRIGSIG-----KLYWFMPPSANLALRELGIVLFLAVVGLKSGGDFVDTLVNGEGLSWIGYGFLITAVP  477 (552)
T ss_pred             chHHHHHHHHHHhccCCC-----CceeecCHHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            467889999999642211     1111122   2346789998888888887765443   33 3566666666666666


Q ss_pred             HHHHHHHHHHHHhhcccCCCCHHHHHHHhhhh-ccccHHHHHHHh
Q 018715          125 FVIISAGAVHFFKQMNIGTLKIGDYLAIGAIF-AATDSVCTLQVL  168 (351)
Q Consensus       125 ~~~~~~~~~~~l~~~~~~~~~~~~alllgail-saTdp~~v~~il  168 (351)
                      .++..+..++++      ++++.  ...|++. +-|+|.+....-
T Consensus       478 ~~~~~~~~~~~~------~~~~~--~~~G~~aG~~t~tp~l~~a~  514 (552)
T PRK03818        478 LLIVGILARMLA------KMNYL--TLCGMLAGSMTDPPALAFAN  514 (552)
T ss_pred             HHHHHHHHHHHH------cCCHH--HHHHHHhccCCCcHHHHHHh
Confidence            655555556776      67766  5677766 446666554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	351
2k3c_A	33	TMIX peptide; membrane peptide, dodecylphosphochol	3e-04

>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic} Length = 33

 Score = 37.0 bits (85), Expect = 3e-04
 Identities = 13/26 (50%), Positives = 21/26 (80%)

Query: 261 AYLSYMLAELFYLSGILTVFFCGIVM 286
           +Y++Y+ AELF+LSGI+ +   G+VM
Sbjct: 3   SYMAYLSAELFHLSGIMALIASGVVM 28

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	351
1zcd_A	388	Na(+)/H(+) antiporter 1; membrane protein; 3.45A {	99.06
2l0e_A	33	Sodium/hydrogen exchanger 1; transmembrane helix,	98.27
2htg_A	28	NHE-1, NHE1 isoform of Na+/H+ exchanger 1, solute;	97.72
2k3c_A	33	TMIX peptide; membrane peptide, dodecylphosphochol	97.26
3zux_A	332	Transporter, ASBTNM; transport protein, membrane p	95.43
1y4e_A	27	Sodium/hydrogen exchanger 1; NHE1 isoform, transme	93.85

>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A

Probab=99.06  E-value=2.3e-09  Score=101.95  Aligned_cols=207  Identities=12%  Similarity=0.106  Sum_probs=141.4

Q ss_pred             hHHHHHhhHHHhhHhhhcCChHHH----HHhhH--HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHhhhh
Q 018715           83 DLFFIYLLPPIIFNAGFQVKKKQF----FRNFM--TIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLKIGDYLAIGAIF  156 (351)
Q Consensus        83 ~~~~~i~L~~ilF~aGl~l~~~~l----~~~~~--~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~alllgail  156 (351)
                      ++.-+-.+.+.+|..|+|+|++.+    |+.++  .....+..|++.++.+     |+.+      +.+...+.--+++.
T Consensus        61 ~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~i-----y~~~------~~~~~~~~~gw~ip  129 (388)
T 1zcd_A           61 LWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALL-----YLAF------NYADPITREGWAIP  129 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHH-----HGGG------CCSSTTHHHHTSSS
T ss_pred             HHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHH-----HHHH------hcCChhhhhhhHHH
Confidence            456788899999999999998876    44444  3467788888888644     4444      56666677888999


Q ss_pred             ccccHHHHHHHhcccC--Cc-hhHHHHHHHhhhhhHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018715          157 AATDSVCTLQVLNQDE--TP-LLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAG  233 (351)
Q Consensus       157 saTdp~~v~~il~~~~--~~-~l~~~l~gEs~lnD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~~~G  233 (351)
                      ++||.+..+.++...+  .| ..+..+.+.+.+||..++++..++.+   ++.+   ......         . ..   .
T Consensus       130 ~ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt---~~~~---~~~l~~---------~-~~---~  190 (388)
T 1zcd_A          130 AATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT---NDLS---MASLGV---------A-AV---A  190 (388)
T ss_dssp             SCCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC---CCCC---HHHHHH---------H-HH---H
T ss_pred             HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc---CCcc---HHHHHH---------H-HH---H
Confidence            9999999999998765  45 48899999999999999999888743   2222   111110         0 01   1


Q ss_pred             HHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhhhcccccCCChhHHHHHHHHHHHHH-HH
Q 018715          234 LLSAFIIKKLYMGRHSTDREVALMILMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLS-FV  312 (351)
Q Consensus       234 ~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~ae~lg~Sgilav~~~Gl~l~~~~~~~~~~~~~~~~~~~~~~~~-~l  312 (351)
                      ....+..+|.    +.+.......+  ....++.++..|.++.+|.+++|+++...++++.+  ..++.++..+... ++
T Consensus       191 ~~~~~~l~r~----~v~~~~~y~~l--gl~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~--~~~~le~~l~p~v~~~  262 (388)
T 1zcd_A          191 IAVLAVLNLC----GARRTGVYILV--GVVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRS--PAKRLEHVLHPWVAYL  262 (388)
T ss_dssp             HHHHHHHHHT----TCCCTHHHHHH--HHHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSC--HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHh----cchhHHHHHHH--HHHHHHHHHHhCccHHHHHHHHHHhccCCCccCCC--HHHHHHHHHHHHHHHH
Confidence            1112333333    11222222322  34667777999999999999999999975432222  2345556666655 58


Q ss_pred             HHHHH-HHHhhhhhcc
Q 018715          313 AEIFI-FLYVGMDALD  327 (351)
Q Consensus       313 ~~~~~-Fv~iG~~i~~  327 (351)
                      +-++| |...|.+++.
T Consensus       263 ilPlFaFanaGv~l~~  278 (388)
T 1zcd_A          263 ILPLFAFANAGVSLQG  278 (388)
T ss_dssp             HHHHHHHHHCCCCCSS
T ss_pred             HHHHHHHHhcCeeecc
Confidence            89999 9999999954

>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}

Probab=98.27  E-value=6e-08  Score=58.39  Aligned_cols=31  Identities=32%  Similarity=0.411  Sum_probs=27.8

Q ss_pred             CHHHHHHHhhhhccccHHHHHHHhcccCCch
Q 018715          145 KIGDYLAIGAIFAATDSVCTLQVLNQDETPL  175 (351)
Q Consensus       145 ~~~~alllgailsaTdp~~v~~il~~~~~~~  175 (351)
                      +|..++++||++|+|||+++.+++|+.+.|+
T Consensus         2 ~~~~~llfGAiis~TDpVavlaif~~~~vp~   32 (33)
T 2l0e_A            2 KKKDNLLFGSIISAVDPVAVLAVFEEIHKKK   32 (33)
T ss_dssp             CCCCCCTTHHHHTTCCHHHHHHHHHHHTTTC
T ss_pred             cHHHHHHHHHHccCCChHHHHHHHHHcCCCC
Confidence            4567899999999999999999999998775

>2htg_A NHE-1, NHE1 isoform of Na+/H+ exchanger 1, solute; membrane protein, transmembrane segment, helix-KINK-helix; NMR {Synthetic}

Probab=97.72  E-value=1.5e-06  Score=49.77  Aligned_cols=22  Identities=59%  Similarity=0.934  Sum_probs=20.5

Q ss_pred             hhHHHHHHHhhhhhHHHHHHHH
Q 018715          175 LLYSLVFGEGVVNDATSVVLFN  196 (351)
Q Consensus       175 ~l~~~l~gEs~lnD~~aivlf~  196 (351)
                      +++.+++|||++||++++++|.
T Consensus         5 ~L~~lvfGESllNDavaiVlf~   26 (28)
T 2htg_A            5 LLHILVFGESLLNDAVTVVLYK   26 (28)
T ss_dssp             TTHHHHTTTTTTTTTTTTTTTT
T ss_pred             eEEEEEEeeeeecccEEEEEEe
Confidence            6999999999999999999875

>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic}

Probab=97.26  E-value=1.7e-06  Score=52.13  Aligned_cols=31  Identities=42%  Similarity=0.748  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHhhccchHHHHHHHHHhhhccc
Q 018715          260 MAYLSYMLAELFYLSGILTVFFCGIVMSHYT  290 (351)
Q Consensus       260 ~~~~~~~~ae~lg~Sgilav~~~Gl~l~~~~  290 (351)
                      .+|.+|..||.+|+||++|+++||+.++++.
T Consensus         2 ~~y~~Yl~AE~~~lSGIlavv~~Gi~~~~y~   32 (33)
T 2k3c_A            2 KSYMAYLSAELFHLSGIMALIASGVVMRPKK   32 (33)
T ss_dssp             CCSTTTGGGSSSTTTTTTTTTTTTSCCCCCC
T ss_pred             hhHHHHHHHHHhCcChHHHHHHHHHHHhhcc
Confidence            3678899999999999999999999999764

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*

Probab=95.43  E-value=1.6  Score=40.26  Aligned_cols=141  Identities=19%  Similarity=0.226  Sum_probs=65.4

Q ss_pred             HHHHhhHHHhhHhhhcCChHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCC--HHHHHHHhhhhccc
Q 018715           85 FFIYLLPPIIFNAGFQVKKKQFFR---NFMTIMLFGAVGTLISFVIISAGAVHFFKQMNIGTLK--IGDYLAIGAIFAAT  159 (351)
Q Consensus        85 ~~~i~L~~ilF~aGl~l~~~~l~~---~~~~i~~la~~g~~~~~~~~~~~~~~~l~~~~~~~~~--~~~alllgailsaT  159 (351)
                      .....+..++|..|.++|.+++++   +++....    +......+.-..++.+...+   +.+  ...++++-++.-++
T Consensus        44 ~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~----~l~~~~vi~Pll~~~l~~~~---~l~~~~~~Glil~~~~P~~  116 (332)
T 3zux_A           44 YIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVII----GVIAQFAIMPATAWCLSKLL---NLPAEIAVGVILVGCCPGG  116 (332)
T ss_dssp             GHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHH----HHHHHHHHHHHHHHHHHHHT---TCCHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHH----HHHHHHHHHHHHHHHHHHHh---CCChHHHHHHHHHhcCCch
Confidence            456788999999999999999984   4444332    22222222222222221111   233  23333333333333


Q ss_pred             cHHHHHHHhcccCCchhHHHHHHHhhhhhHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018715          160 DSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLSHINLSIALKFVGSFFYLFIASTMLGVIAGLLSAFI  239 (351)
Q Consensus       160 dp~~v~~il~~~~~~~l~~~l~gEs~lnD~~aivlf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~~~G~~~~~l  239 (351)
                      +...+..-+-+ +...   .-.....+|+..+++..-....+..++..+.+..+...+.+..++.    =.+.|.+..++
T Consensus       117 ~~s~v~t~~a~-Gd~~---la~~~~~~stll~~~~~Pl~~~l~~g~~~~v~~~~~~~~l~~~vll----P~~lG~l~r~~  188 (332)
T 3zux_A          117 TASNVMTYLAR-GNVA---LSVAVTSVSTLTSPLLTPAIFLMLAGEMLEIQAAGMLMSIVKMVLL----PIVLGLIVHKV  188 (332)
T ss_dssp             THHHHHHHHTT-CCHH---HHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTHH----HHHHHHHHHHH
T ss_pred             hHHHHHHHHhC-CCHH---HHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence            33332222212 2222   2233556677777776665554443332233333344443333333    34444555444


Q ss_pred             H
Q 018715          240 I  240 (351)
Q Consensus       240 ~  240 (351)
                      .
T Consensus       189 ~  189 (332)
T 3zux_A          189 L  189 (332)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1y4e_A Sodium/hydrogen exchanger 1; NHE1 isoform, transmembrane, membrane protein; HET: HSL; NMR {Homo sapiens}

Probab=93.85  E-value=0.0059  Score=34.47  Aligned_cols=25  Identities=44%  Similarity=1.059  Sum_probs=21.5

Q ss_pred             cChhHHHHHhhHHHhhHhhhcCChH
Q 018715           80 FSEDLFFIYLLPPIIFNAGFQVKKK  104 (351)
Q Consensus        80 ~~~~~~~~i~L~~ilF~aGl~l~~~  104 (351)
                      ++++.|+...||+|+|++|+.++.|
T Consensus         2 ~~~~~FF~~LLPPII~~aGy~l~~r   26 (27)
T 1y4e_A            2 LQSDVFFLFLLPPIILDAGYFLPLR   26 (27)
T ss_dssp             CCSCSSHHHHSCCSSHHHHTTGGGG
T ss_pred             CccceeeeeccCccEeeccccccCC
Confidence            4677899999999999999998654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00