Citrus Sinensis ID: 018742

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-
MITFEQDSDVLQWGLQLFESDPYLNCGYTNTVTPDDESYYYGQHFKEDHYETESCDVESDELIAHALQEELSQLAVSEASESPHETEENLQGPVFQHGWVNHSVGGYYSGQETGQEEADDTQPSSLCSSHEEVSYCGEEWSYPQELTDEYALDGEVGKRLNQMVPVPHVPRINGEIPSIDEATLDHQRLLERLQVYDLVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAADLYGVKIFVITSFKDTCYIEILPNVERSIRVIYLSFWAEVHYNSIYPAGDVPTFETKKKKRWRLFRNKQMESPDECQ
cccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHccccccccHHHHHHHHHHHcccEEEEEcccccEEEEEcccccccccEEEEEEccccccccEEcccccccHHHHHHHHHccccccccccccccc
cccEcccccEEEEcccccccccccccccccEEEEcccccccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHcccccccHHHHHHHHHccccccccEHHHHHHHHHcccEEEEEEcccccEEEEccccccccccEEEEEEccccEccEccccccccccccccccEEEccccccccccccc
mitfeqdsDVLQWGlqlfesdpylncgytntvtpddesyyygqhfkedhyetescdveSDELIAHALQEELSQLAVseasespheteenlqgpvfqhgwvnhsvggyysgqetgqeeaddtqpsslcssheevsycgeewsypqeltdeyaldgevgkrlnqmvpvphvpringeipsideaTLDHQRLLERLQVYDLVEhkvqgdgncqfrALSDQIYRTAEHHEFVRQQIVAQLksnpdiyegyvpmaYGDYLEKmsesgewgdhVTLQAAADLYGVKIFVITSfkdtcyieilPNVERSIRVIYLSFWAEVhynsiypagdvptfetkKKKRWRLFRnkqmespdecq
mitfeqdsdvLQWGLQLFESDPYLNCGYTNTVTPDDESYYYGQHFKEDHYETESCDVESDELIAHALQEELSQLAVSEASESPHETEENLQGPVFQHGWVNHSVGGYYSGQETGQEEADDTQPSSLCSSHEEVSYCGEEWSYPQELTDEYALDGEVGKRLNQMVPVPHVPRINGEIPSIDEATLDHQRLLERLQVYDLVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAADLYGVKIFVITSFKDTCYIEILPNVERSIRVIYLSFWAEVHYNsiypagdvptfetKKKKRWRLfrnkqmespdecq
MITFEQDSDVLQWGLQLFESDPYLNCGYTNTVTPDDESYYYGQHFKEDHYETESCDVESDELIAHALQEELSQLAVSEASESPHETEENLQGPVFQHGWVNHSVGGYYSGQETGQEEADDTQPSSLCSSHEEVSYCGEEWSYPQELTDEYALDGEVGKRLNQMVPVPHVPRINGEIPSIDEATLDHQRLLERLQVYDLVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAADLYGVKIFVITSFKDTCYIEILPNVERSIRVIYLSFWAEVHYNSIYPAGDVPTFETKKKKRWRLFRNKQMESPDECQ
********DVLQWGLQLFESDPYLNCGYTNTVTPDDESYYYGQHFKEDHYETESCDV****LIA*****************************VFQHGWVNHSVGGYY************************VSYCGEEWSYPQELTDEYALDGEVGKRLNQMVPVPHVPRINGEIPSIDEATLDHQRLLERLQVYDLVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAADLYGVKIFVITSFKDTCYIEILPNVERSIRVIYLSFWAEVHYNSIYPAGDVPTFETKKKKRWRL*************
***FEQDSDVLQWGLQLFESDPYLNCGYTNTVTPDDESYYYGQHFKEDHYETESCDVESDELIAHA***********************************************************************************************************************HQRLLERLQVYDLVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAADLYGVKIFVITSFKDTCYIEIL*NVERSIRVIYLSFWAEVHYNSIYPA*****************************
MITFEQDSDVLQWGLQLFESDPYLNCGYTNTVTPDDESYYYGQHFKEDHYETESCDVESDELIAHALQEELSQL***************LQGPVFQHGWVNHSVGGYYSGQ**************************EEWSYPQELTDEYALDGEVGKRLNQMVPVPHVPRINGEIPSIDEATLDHQRLLERLQVYDLVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAADLYGVKIFVITSFKDTCYIEILPNVERSIRVIYLSFWAEVHYNSIYPAGDVPTFETKKKKRWRLFRNK*********
MITFEQDSDVLQWGLQLFESDPYLNCGYTNTVTPDDESYYYGQHFKEDHYETESCDVESDELIAHALQEELSQLAVSEASESPH***ENLQGPVFQHGWVNHSV*GY***********************************PQELTDEYALDGEVGKRLNQMVPVPHVPRINGEIPSIDEATLDHQRLLERLQVYDLVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAADLYGVKIFVITSFKDTCYIEILPNVERSIRVIYLSFWAEVHYNSIYPAGDVPTFETKKKKRWRLFRNK*********
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MITFEQDSDVLQWGLQLFESDPYLNCGYTNTVTPDDESYYYGQHFKEDHYETESCDVESDELIAHALQEELSQLAVSEASESPHETEENLQGPVFQHGWVNHSVGGYYSGQETGQEEADDTQPSSLCSSHEEVSYCGEEWSYPQELTDEYALDGEVGKRLNQMVPVPHVPRINGEIPSIDEATLDHQRLLERLQVYDLVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAADLYGVKIFVITSFKDTCYIEILPNVERSIRVIYLSFWAEVHYNSIYPAGDVPTFETKKKKRWRLFRNKQMESPDECQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query351 2.2.26 [Sep-21-2011]
Q54P70766 OTU domain-containing pro yes no 0.504 0.231 0.373 9e-23
Q08BW0 560 OTU domain-containing pro yes no 0.339 0.212 0.314 2e-10
Q2YDU3 566 OTU domain-containing pro no no 0.407 0.252 0.278 2e-10
Q3U2S4 566 OTU domain-containing pro yes no 0.407 0.252 0.278 2e-10
Q96G74 571 OTU domain-containing pro yes no 0.407 0.250 0.282 2e-10
Q7ZX21 513 OTU domain-containing pro N/A no 0.393 0.269 0.280 3e-10
Q640H3 518 OTU domain-containing pro N/A no 0.339 0.229 0.290 9e-10
Q6GL44 518 OTU domain-containing pro yes no 0.339 0.229 0.290 9e-10
Q9D8C3 1166 UDP-N-acetylglucosamine t no no 0.384 0.115 0.279 1e-08
P22856867 Putative ubiquitin thioes N/A no 0.367 0.148 0.266 5e-08
>sp|Q54P70|Y4757_DICDI OTU domain-containing protein DDB_G0284757 OS=Dictyostelium discoideum GN=DDB_G0284757 PE=4 SV=2 Back     alignment and function desciption
 Score =  108 bits (269), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 71/190 (37%), Positives = 103/190 (54%), Gaps = 13/190 (6%)

Query: 145 ELTDEYALDGEVGKRLNQMVPV--PHVPRINGEIPSIDEATLDHQRLLERLQVYDLVEHK 202
           E+     L+G V K +N    +   +V      +P   E  +  QRL ERL++Y L   K
Sbjct: 575 EIKTNLLLEGLVLKNMNHDASLISSNVLLNLHPLPQSKEVQIAQQRLNERLELYMLKNSK 634

Query: 203 -VQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPD--------IYEGYVPMAYGD 253
            + GDGNCQ  ALSDQ+Y    H + VR+ IV  L+ N D        I +      + D
Sbjct: 635 EIPGDGNCQMHALSDQLYGDLSHSQEVRKTIVDWLRKNKDFQLPNGATICQFVNTNNWDD 694

Query: 254 YLEKMSESGEWGDHVTLQAAADLYGVKIFVITSF--KDTCYIEILPNVERSIRVIYLSFW 311
           Y   MS++G WGDH+TL AAA+ +G KI +I+S   +   +IEI+P+   + +V+ LS +
Sbjct: 695 YCNDMSKNGNWGDHLTLLAAAEHFGSKISIISSVESQSNFFIEIIPSKILNDKVLLLSHY 754

Query: 312 AEVHYNSIYP 321
           AE HY S+ P
Sbjct: 755 AEFHYGSLCP 764

Dictyostelium discoideum (taxid: 44689)
EC: 3EC: .EC: 1EC: .EC: 2EC: .EC: -
>sp|Q08BW0|OTU5A_DANRE OTU domain-containing protein 5-A OS=Danio rerio GN=otud5a PE=2 SV=1 Back     alignment and function description
>sp|Q2YDU3|OTUD5_RAT OTU domain-containing protein 5 OS=Rattus norvegicus GN=Otud5 PE=2 SV=2 Back     alignment and function description
>sp|Q3U2S4|OTUD5_MOUSE OTU domain-containing protein 5 OS=Mus musculus GN=Otud5 PE=1 SV=2 Back     alignment and function description
>sp|Q96G74|OTUD5_HUMAN OTU domain-containing protein 5 OS=Homo sapiens GN=OTUD5 PE=1 SV=1 Back     alignment and function description
>sp|Q7ZX21|OTU5A_XENLA OTU domain-containing protein 5-A OS=Xenopus laevis GN=otud5-a PE=2 SV=1 Back     alignment and function description
>sp|Q640H3|OTU5B_XENLA OTU domain-containing protein 5-B OS=Xenopus laevis GN=otud5-b PE=2 SV=1 Back     alignment and function description
>sp|Q6GL44|OTUD5_XENTR OTU domain-containing protein 5 OS=Xenopus tropicalis GN=otud5 PE=2 SV=1 Back     alignment and function description
>sp|Q9D8C3|ALG13_MOUSE UDP-N-acetylglucosamine transferase subunit ALG13 homolog OS=Mus musculus GN=Alg13 PE=2 SV=2 Back     alignment and function description
>sp|P22856|VL96_IRV1 Putative ubiquitin thioesterase L96 OS=Tipula iridescent virus GN=L96 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query351
225435383353 PREDICTED: uncharacterized protein LOC10 0.997 0.991 0.734 1e-148
297746292354 unnamed protein product [Vitis vinifera] 0.997 0.988 0.734 1e-148
297741626338 unnamed protein product [Vitis vinifera] 0.960 0.997 0.649 1e-120
359481389341 PREDICTED: OTU domain-containing protein 0.960 0.988 0.643 1e-119
449517642336 PREDICTED: uncharacterized LOC101218393 0.957 1.0 0.628 1e-117
449456030336 PREDICTED: uncharacterized protein LOC10 0.957 1.0 0.628 1e-117
296085991325 unnamed protein product [Vitis vinifera] 0.905 0.978 0.598 1e-111
224119436338 predicted protein [Populus trichocarpa] 0.960 0.997 0.607 1e-109
357440359338 Cysteine-type peptidase [Medicago trunca 0.957 0.994 0.561 1e-105
356548331337 PREDICTED: uncharacterized protein LOC10 0.937 0.976 0.592 1e-105
>gi|225435383|ref|XP_002282609.1| PREDICTED: uncharacterized protein LOC100243216 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 257/350 (73%), Positives = 294/350 (84%)

Query: 1   MITFEQDSDVLQWGLQLFESDPYLNCGYTNTVTPDDESYYYGQHFKEDHYETESCDVESD 60
           MIT+EQD DV++WGLQLF+ DP+ NCGY  T+  +D SYY G +FKEDHY+ E  +VE+D
Sbjct: 1   MITYEQDPDVVRWGLQLFDGDPFSNCGYGGTIVQNDVSYYDGPYFKEDHYDNECSNVEND 60

Query: 61  ELIAHALQEELSQLAVSEASESPHETEENLQGPVFQHGWVNHSVGGYYSGQETGQEEADD 120
           E+IAHALQEELSQLAV EA+   HE  E+LQ  +F   W + S+G Y  G E+GQE+ DD
Sbjct: 61  EIIAHALQEELSQLAVDEAAGLSHEVVEDLQVSIFPEEWPDQSMGNYGFGHESGQEDTDD 120

Query: 121 TQPSSLCSSHEEVSYCGEEWSYPQELTDEYALDGEVGKRLNQMVPVPHVPRINGEIPSID 180
              SS CSS +E SY GE+WSY  +LTDEYALD EVGK LNQMVPVPHVP+INGEIPS+D
Sbjct: 121 MGLSSSCSSPDEKSYNGEDWSYSLDLTDEYALDDEVGKILNQMVPVPHVPKINGEIPSLD 180

Query: 181 EATLDHQRLLERLQVYDLVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNP 240
           EATLDHQRLL+RLQ++DLVE KVQGDGNCQFR+LSDQ+Y T EHH+F+RQQ+V QLKS P
Sbjct: 181 EATLDHQRLLDRLQLFDLVELKVQGDGNCQFRSLSDQVYCTPEHHQFIRQQVVNQLKSYP 240

Query: 241 DIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAADLYGVKIFVITSFKDTCYIEILPNVE 300
           +IYEGYVPMAYGDYLEKMS++GEWGDHVTLQAAADLYGVKIFVITSFKDTCYIEILPNV+
Sbjct: 241 EIYEGYVPMAYGDYLEKMSKTGEWGDHVTLQAAADLYGVKIFVITSFKDTCYIEILPNVQ 300

Query: 301 RSIRVIYLSFWAEVHYNSIYPAGDVPTFETKKKKRWRLFRNKQMESPDEC 350
           RS RV+ LSFWAEVHYNSIY  GDVP FETKKKKRW  FRNKQ ES DEC
Sbjct: 301 RSERVMLLSFWAEVHYNSIYFKGDVPEFETKKKKRWWSFRNKQFESQDEC 350

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297746292|emb|CBI16348.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297741626|emb|CBI32758.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359481389|ref|XP_002276656.2| PREDICTED: OTU domain-containing protein DDB_G0284757-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449517642|ref|XP_004165854.1| PREDICTED: uncharacterized LOC101218393 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449456030|ref|XP_004145753.1| PREDICTED: uncharacterized protein LOC101218393 [Cucumis sativus] Back     alignment and taxonomy information
>gi|296085991|emb|CBI31432.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224119436|ref|XP_002331229.1| predicted protein [Populus trichocarpa] gi|222873415|gb|EEF10546.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357440359|ref|XP_003590457.1| Cysteine-type peptidase [Medicago truncatula] gi|355479505|gb|AES60708.1| Cysteine-type peptidase [Medicago truncatula] Back     alignment and taxonomy information
>gi|356548331|ref|XP_003542556.1| PREDICTED: uncharacterized protein LOC100811851 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query351
TAIR|locus:2146673345 AT5G04250 [Arabidopsis thalian 0.923 0.939 0.484 6.8e-79
TAIR|locus:2142659356 AT5G03330 [Arabidopsis thalian 0.951 0.938 0.449 7.1e-77
TAIR|locus:2078648219 AT3G02070 [Arabidopsis thalian 0.549 0.881 0.584 5e-60
TAIR|locus:2091633245 AT3G22260 [Arabidopsis thalian 0.655 0.938 0.464 2.6e-54
DICTYBASE|DDB_G0284757766 DDB_G0284757 "OTU domain conta 0.581 0.266 0.35 1.4e-23
GENEDB_PFALCIPARUM|PF10_0308 938 PF10_0308 "OTU-like cysteine p 0.324 0.121 0.327 4.4e-13
UNIPROTKB|Q8IJ91 938 PF10_0308 "OTU-like cysteine p 0.324 0.121 0.327 4.4e-13
DICTYBASE|DDB_G0267906 438 DDB_G0267906 "OTU domain conta 0.435 0.349 0.303 9.4e-13
TAIR|locus:2056133189 AT2G39320 [Arabidopsis thalian 0.242 0.449 0.413 4.2e-11
MGI|MGI:1859615 566 Otud5 "OTU domain containing 5 0.401 0.249 0.281 1.8e-10
TAIR|locus:2146673 AT5G04250 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 793 (284.2 bits), Expect = 6.8e-79, P = 6.8e-79
 Identities = 172/355 (48%), Positives = 231/355 (65%)

Query:     4 FEQDSDVLQWGLQLFESDPYLNCGYTNTVTPDDESYYYGQHF-KEDHYETESCDVESDEL 62
             +E D D L+WGL   E     N G  ++VT  +      Q + +E + +  +  V++D +
Sbjct:     3 YEPDPDALRWGLHDLEVCTLTNAGSCSSVTRYESGGGGTQGYVREGYNQPVTGYVDNDAV 62

Query:    63 IAHALQEELSQLAVSEAS---------------ESPHETEENLQGP---VFQHGWVNHSV 104
             IA   Q+ELS++A +EAS                 PH+ +EN QG    + Q   + H+ 
Sbjct:    63 IAQFYQDELSRVARAEASGINSLSPTSVVAQDWPHPHQGQEN-QGEAIDITQESDILHNH 121

Query:   105 GGYYSGQETGQEEADDTQPSSLCSSHEEVSYCGEEWSYPQELTDEYALDGEVGKRLNQMV 164
              G    +   +   +  Q S    S ++ S C  E        +E +   EVGKRLNQM+
Sbjct:   122 NGNMEDKNVARIRFEGGQSSP---SRDDDSVCSVE-------IEEESWS-EVGKRLNQMI 170

Query:   165 PVPHVPRINGEIPSIDEATLDHQRLLERLQVYDLVEHKVQGDGNCQFRALSDQIYRTAEH 224
             P+ HVP+INGE+PS DE   DH+RL +RLQ+Y LVE+K++GDGNCQFR+LSDQ+YR+ EH
Sbjct:   171 PIAHVPKINGELPSEDEQISDHERLFQRLQLYGLVENKIEGDGNCQFRSLSDQLYRSPEH 230

Query:   225 HEFVRQQIVAQLKSNPDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAADLYGVKIFVI 284
             H FVR+Q+V QL  N +IYEGYVPMAY DYL+ M  +GEWGDHVTLQAAADL+GV++FVI
Sbjct:   231 HNFVREQVVNQLAYNREIYEGYVPMAYNDYLKAMKRNGEWGDHVTLQAAADLFGVRMFVI 290

Query:   285 TSFKDTCYIEILPNVERSIRVIYLSFWAEVHYNSIYPAGDVPTFETKKKKRWRLF 339
             TSFKDTCYIEILP+ ++S R+I LSFWAEVHYNSIYP G++P  E KKKK++ +F
Sbjct:   291 TSFKDTCYIEILPHFQKSNRLICLSFWAEVHYNSIYPEGELPIPEGKKKKKYWVF 345
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0008234 "cysteine-type peptidase activity" evidence=ISS
GO:0009611 "response to wounding" evidence=RCA
GO:0009620 "response to fungus" evidence=RCA
GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA
GO:0009753 "response to jasmonic acid stimulus" evidence=RCA
GO:0010286 "heat acclimation" evidence=RCA
TAIR|locus:2142659 AT5G03330 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078648 AT3G02070 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2091633 AT3G22260 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0284757 DDB_G0284757 "OTU domain containin protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PF10_0308 PF10_0308 "OTU-like cysteine protease, putative" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IJ91 PF10_0308 "OTU-like cysteine protease, putative" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0267906 DDB_G0267906 "OTU domain containin protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TAIR|locus:2056133 AT2G39320 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:1859615 Otud5 "OTU domain containing 5" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query351
pfam02338123 pfam02338, OTU, OTU-like cysteine protease 2e-25
>gnl|CDD|216981 pfam02338, OTU, OTU-like cysteine protease Back     alignment and domain information 
 Score = 98.8 bits (246), Expect = 2e-25
 Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 10/122 (8%)

Query: 205 GDGNCQFRALSDQIY--RTAEHHEFVRQQIVAQLKSNPDIYEGYVPMAYGDYLEKMSESG 262
           GDGNC F A+SDQ+      E H+ +R+ +V  L+ N + +E ++     +Y + +S+ G
Sbjct: 2   GDGNCLFHAVSDQLGDAGRQELHDELREAVVEYLRENREDFEKFLEEDENEYYKWISKDG 61

Query: 263 EWGDHVTLQAAADLYGVKIFV--ITSFKDTCYIEILP-----NVERSIRVIYLSFWA-EV 314
            WG ++ + A A +  V I V  +   + T YI+I       N +  IR+ YL       
Sbjct: 62  AWGGNIEIFALAHILRVPIIVYKLQGGRITVYIKIYGTYLPLNKKPVIRLSYLGLEYTGN 121

Query: 315 HY 316
           HY
Sbjct: 122 HY 123

This family is comprised of a group of predicted cysteine proteases, homologous to the Ovarian Tumour (OTU) gene in Drosophila. Members include proteins from eukaryotes, viruses and pathogenic bacterium. The conserved cysteine and histidine, and possibly the aspartate, represent the catalytic residues in this putative group of proteases. Length = 123

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 351
KOG2605371 consensus OTU (ovarian tumor)-like cysteine protea 100.0
PF02338121 OTU: OTU-like cysteine protease; InterPro: IPR0033 99.92
KOG2606302 consensus OTU (ovarian tumor)-like cysteine protea 99.89
KOG3288307 consensus OTU-like cysteine protease [Signal trans 99.63
PF10275244 Peptidase_C65: Peptidase C65 Otubain; InterPro: IP 99.44
KOG3991256 consensus Uncharacterized conserved protein [Funct 99.3
COG5539306 Predicted cysteine protease (OTU family) [Posttran 98.53
COG5539306 Predicted cysteine protease (OTU family) [Posttran 98.48
PF05415104 Peptidase_C36: Beet necrotic yellow vein furovirus 80.72
>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=1.2e-36  Score=301.30  Aligned_cols=332  Identities=30%  Similarity=0.365  Sum_probs=255.8

Q ss_pred             ccccCCCCceecccccccCCCCCC----CCCCCcccCCCC-CCcccccccccccccccccccchHHHHHHHHHHHHHHhh
Q 018742            2 ITFEQDSDVLQWGLQLFESDPYLN----CGYTNTVTPDDE-SYYYGQHFKEDHYETESCDVESDELIAHALQEELSQLAV   76 (351)
Q Consensus         2 ~~~e~~~~~~~w~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~d~~ia~~~q~e~~~~~~   76 (351)
                      +.++++|.+++|.|+.+..+....    .|-++.+.|.-. ++....+.+...+......|++|++||+++|++++.++.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~r~~~~~~~~~g~~~~~~~~~r~~~v~~~~~~~~~~~d~~~~~e~   80 (371)
T KOG2605|consen    1 TFREEVSGDFDWYLWDLGKTKTLGTILELGAMSHVYRRNVIDYEPFGMGTDGYNNKRYGEVDRDFMIARGHQDEVLTVED   80 (371)
T ss_pred             CCccccCchHHHHhhcCCCCcccccchhhhhccccccCCCCCcCCccceeccccCccccchhhhhhhhcccccccccccH
Confidence            357889999999999887555444    466767666555 777778888455566677899999999999999999999


Q ss_pred             hhhcCCCCcccccccCccccCC-CCcCCCC---CccCCCCCC-----ccccC--------------CCCCCCCCCCCccc
Q 018742           77 SEASESPHETEENLQGPVFQHG-WVNHSVG---GYYSGQETG-----QEEAD--------------DTQPSSLCSSHEEV  133 (351)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~g~~~~-----~~~~~--------------~~~~~~~~s~~~~~  133 (351)
                      +|.+...+.-..    ++..++ |..++-.   +||+-+...     .+..+              ...+.++.++++..
T Consensus        81 ~e~~~~~~~v~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~s~~~~~~~~~~~~~~~~~~~~~~sd~  156 (371)
T KOG2605|consen   81 AEMAAICQSVLF----KVLYQERFKLPSDTPCNGENSPMCSFHSRRGNESFQAASFGGLEIDLEVERNSPEWLGQSPSDP  156 (371)
T ss_pred             HHHhhHHhhhhh----hhhhhhcccCCCCCcccccCCCCCcccccccccccccccccccccchhhhccCchhcccccccc
Confidence            999988764433    444444 3332222   222111111     11100              01111112222211


Q ss_pred             ccCCCCCccccccchh-hhhhhHHhhhhccCCCCCCCCCCCCCCCCCchhhHHHHHHHHHhhcCCeEEEEecCCCChHHH
Q 018742          134 SYCGEEWSYPQELTDE-YALDGEVGKRLNQMVPVPHVPRINGEIPSIDEATLDHQRLLERLQVYDLVEHKVQGDGNCQFR  212 (351)
Q Consensus       134 ~~~~~~~~~~~~~~d~-~~~d~~vgkrl~~~~p~p~~p~~ng~iP~~dea~~d~~rL~~~L~~~GL~i~~VpGDGNCLFR  212 (351)
                          .....+.+.... ...+.++|.++|++.|++++|.+++.+|+..+..++++++.+++..+|+.+++|.+||||+||
T Consensus       157 ----~~~~~~~~~~~~~~~~~~~~g~~in~y~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~g~e~~Kv~edGsC~fr  232 (371)
T KOG2605|consen  157 ----LRSVPSMEAIHARHPEAKEVGVRINDYNPKVLVPFINGLPPSEEEPQSAHERSAKRKKHFGFEYKKVVEDGSCLFR  232 (371)
T ss_pred             ----ccccccccchhhccccchhhcccccCCCccccccccccCCCchHHHHHHHHHHHHHHHHhhhhhhhcccCCchhhh
Confidence                122233322221 256788999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCchhHHHHHHHHHHHHhhCcccccCcCCCcHHHHHHhhccCCCCCchHHHHHHHH--HhCCcEEEEEccCCc
Q 018742          213 ALSDQIYRTAEHHEFVRQQIVAQLKSNPDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAAD--LYGVKIFVITSFKDT  290 (351)
Q Consensus       213 AlS~qL~g~q~~H~~LRk~vV~yL~~npd~y~~fv~~~~~eYl~~M~k~g~WGg~iELqAlA~--~y~v~I~V~ss~~~~  290 (351)
                      |+|+|+|++.+.|.++|+++++++++++++|+.|+++++.+|+++|++++.||+|+|+||+|.  -+..++.++++.+.+
T Consensus       233 a~aDQvy~d~e~~~~~~~~~~dq~~~e~~~~~~~vt~~~~~y~k~kr~~~~~gnhie~Qa~a~~~~~~~~~~~~~~~~~t  312 (371)
T KOG2605|consen  233 ALADQVYGDDEQHDHNRRECVDQLKKERDFYEDYVTEDFTSYIKRKRADGEPGNHIEQQAAADIYEEIEKPLNITSFKDT  312 (371)
T ss_pred             ccHHHhhcCHHHHHHHHHHHHHHHhhcccccccccccchhhcccccccCCCCcchHHHhhhhhhhhhccccceeeccccc
Confidence            999999999999999999999999999999999999999999999999999999999999998  667788888889999


Q ss_pred             eEEEEcCCCCCCCCeEEEEecCCCcceeeecC--CCCC-Cchhhhhhhhhhhcc
Q 018742          291 CYIEILPNVERSIRVIYLSFWAEVHYNSIYPA--GDVP-TFETKKKKRWRLFRN  341 (351)
Q Consensus       291 ~~iei~P~~~~~~~~I~Lsy~~~~HYdSV~~~--~d~p-~~~~~~~~~w~~~~~  341 (351)
                      +++.+.|....+...+++.||...||+.++.-  ...+ ....++++.||+|++
T Consensus       313 ~~~~~~~~~~~~~~~~~~n~~~~~h~~~~~~~~~~~~s~~~~~~~~r~~~~~~~  366 (371)
T KOG2605|consen  313 CYIQTPPAIEESVKMEKYNFWVEVHYNTARHSGKSADSATLEEKTKRKSLRRGT  366 (371)
T ss_pred             ceeccCcccccchhhhhhcccchhhhhhcccccccccccchhhccCCCchhhcc
Confidence            99988887778888899999999999999984  3333 444566777777765

>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae Back     alignment and domain information
>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG3991 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05415 Peptidase_C36: Beet necrotic yellow vein furovirus-type papain-like endopeptidase; InterPro: IPR008746 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query351
3tmp_A184 The Catalytic Domain Of Human Deubiquitinase Duba I 2e-11
3pfy_A185 The Catalytic Domain Of Human Otud5 Length = 185 2e-10
3tmo_A184 The Catalytic Domain Of Human Deubiquitinase Duba L 5e-10
>pdb|3TMP|A Chain A, The Catalytic Domain Of Human Deubiquitinase Duba In Complex With Ubiquitin Aldehyde Length = 184 Back     alignment and structure 
Iteration: 1

 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 76/154 (49%), Gaps = 13/154 (8%)
Query: 176 IPSIDEATLDHQRLLERLQVYD---LVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQI 232
           I ++D AT++ Q       + D    +  +++ DG C FRA++DQ+Y   + HE VR+  
Sbjct: 21  IEAMDPATVEQQEHWFEKALRDKKGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHC 80
Query: 233 VAQLKSNPDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAADLYGVKIFVITSFKDTCY 292
           +  L  N D +  YV   +  Y+ +  ++   G+H+ +QA A++Y   + V      T  
Sbjct: 81  MDYLMKNADYFSNYVTEDFTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTGTSA 140
Query: 293 IE-------ILPNVERSIRVIYLSFWAEVHYNSI 319
           +E       I  N +  IRV   S+   +HYNS+
Sbjct: 141 VEPINTFHGIHQNEDEPIRV---SYHRNIHYNSV 171
>pdb|3PFY|A Chain A, The Catalytic Domain Of Human Otud5 Length = 185 Back     alignment and structure
>pdb|3TMO|A Chain A, The Catalytic Domain Of Human Deubiquitinase Duba Length = 184 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query351
3pfy_A185 OTU domain-containing protein 5; structural genomi 2e-35
3phx_A185 RNA-directed RNA polymerase L; OTU domain, DE-ubiq 5e-31
3phu_A219 RNA-directed RNA polymerase L; OTU domain, DE-ubiq 2e-29
3by4_A212 OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro 2e-27
1tff_A234 Ubiquitin thiolesterase protein OTUB2; hydrolase; 2e-07
2zfy_A234 Ubiquitin thioesterase OTUB1; otubain, structural 7e-05
>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A* Length = 185 Back     alignment and structure
 Score =  126 bits (318), Expect = 2e-35
 Identities = 37/155 (23%), Positives = 69/155 (44%), Gaps = 4/155 (2%)

Query: 173 NGEIPSIDEATLDHQR---LLERLQVYDLVEHKVQGDGNCQFRALSDQIYRTAEHHEFVR 229
              I ++D AT++ Q              +  +++ DG C FRA++DQ+Y   + HE VR
Sbjct: 31  AARIEAMDPATVEQQEHWFEKALRDKKGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVR 90

Query: 230 QQIVAQLKSNPDIYEGYVPMAYGDYLEKMSESGEWGDHVTLQAAADLYGVKIFVITSFKD 289
           +  +  L  N D +  YV   +  Y+ +  ++   G+H+ +QA A++Y   + V   +  
Sbjct: 91  KHCMDYLMKNADYFSNYVTEDFTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVY-QYST 149

Query: 290 TCYIEILPNVERSIRVIYLSFWAEVHYNSIYPAGD 324
                     +     I +S+   +HYNS+     
Sbjct: 150 EPINTFHGIHQNEDEPIRVSYHRNIHYNSVVNPNK 184
>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A Length = 185 Back     alignment and structure
>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200} Length = 219 Back     alignment and structure
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A Length = 212 Back     alignment and structure
>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11 Length = 234 Back     alignment and structure
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A Length = 234 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query351
3pfy_A185 OTU domain-containing protein 5; structural genomi 100.0
3by4_A212 OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro 99.98
3phx_A185 RNA-directed RNA polymerase L; OTU domain, DE-ubiq 99.97
3phu_A219 RNA-directed RNA polymerase L; OTU domain, DE-ubiq 99.96
1tff_A234 Ubiquitin thiolesterase protein OTUB2; hydrolase; 99.85
2zfy_A234 Ubiquitin thioesterase OTUB1; otubain, structural 99.8
4dhi_B284 Ubiquitin thioesterase otubain-like; ubiquitin E2 99.76
4ddg_A399 Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI 99.72
3dkb_A390 Tumor necrosis factor, alpha-induced protein 3; OT 98.73
3zrh_A454 Ubiquitin thioesterase zranb1; hydrolase, deubiqui 98.52
>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A* Back     alignment and structure
Probab=100.00  E-value=1.8e-36  Score=274.43  Aligned_cols=134  Identities=25%  Similarity=0.485  Sum_probs=102.2

Q ss_pred             HHHHHHh-hcCCeEEEEecCCCChHHHHHHHHHhcCchhHHHHHHHHHHHHhhCcccccCcCCCcHHHHHHhhccCCCCC
Q 018742          187 QRLLERL-QVYDLVEHKVQGDGNCQFRALSDQIYRTAEHHEFVRQQIVAQLKSNPDIYEGYVPMAYGDYLEKMSESGEWG  265 (351)
Q Consensus       187 ~rL~~~L-~~~GL~i~~VpGDGNCLFRAlS~qL~g~q~~H~~LRk~vV~yL~~npd~y~~fv~~~~~eYl~~M~k~g~WG  265 (351)
                      ..+.++| +.+||++++|+|||||||||||+||+++++.|..||+.|++||++|++.|.+|++++|++||++|+++++||
T Consensus        47 ~~~~~~l~~~~gL~~~~I~~DGnCLFrAia~qL~g~~~~h~~LR~~vv~yi~~n~d~f~~Fv~~~~e~Y~~~m~~~~~WG  126 (185)
T 3pfy_A           47 HWFEKALRDKKGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYINRKRKNNCHG  126 (185)
T ss_dssp             HHHHHHHHHHHCCEEECCCCSTTHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHTHHHHTTCC-----------------C
T ss_pred             HHHHHHHHHHCCcEEEeeCCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhCCCccc
Confidence            3455555 799999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHhCCcEEEEEccCCceEEEEcC-CCCCCCCeEEEEecCCCcceeeecC
Q 018742          266 DHVTLQAAADLYGVKIFVITSFKDTCYIEILP-NVERSIRVIYLSFWAEVHYNSIYPA  322 (351)
Q Consensus       266 g~iELqAlA~~y~v~I~V~ss~~~~~~iei~P-~~~~~~~~I~Lsy~~~~HYdSV~~~  322 (351)
                      |++||+|||++|+++|+|++.....  +.+++ ......++|+|+|++++|||||+..
T Consensus       127 g~iEL~AlS~~~~v~I~V~~~~~~~--i~i~~g~~~~~~~~I~L~Y~~~~HYnSv~~p  182 (185)
T 3pfy_A          127 NHIEMQAMAEMYNRPVEVYQYSTEP--INTFHGIHQNEDEPIRVSYHRNIHYNSVVNP  182 (185)
T ss_dssp             CHHHHHHHHHHHTSCEEEESSCSSC--SEEECTTSCCTTSCEEEEEETTTEEEEEECC
T ss_pred             hHHHHHHHHHhhCCcEEEEECCCCC--eEEecCccCCCCCEEEEEECCCCCcccccCC
Confidence            9999999999999999999875432  33333 2345678999999999999999854
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A Back     alignment and structure
>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A Back     alignment and structure
>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200} Back     alignment and structure
>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11 Back     alignment and structure
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A Back     alignment and structure
>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A Back     alignment and structure
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A Back     alignment and structure
>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A Back     alignment and structure
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 351
d1tffa_228 d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB 8e-12
>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 228 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.9 bits (150), Expect = 8e-12
 Identities = 16/99 (16%), Positives = 36/99 (36%), Gaps = 4/99 (4%)

Query: 227 FVRQQIVAQLKSNPDIYEGYVP---MAYGDYLEKMSESGEWGDHVTLQAAADLYGVKIFV 283
           F+R    A +++  D +  ++            ++       DH+ + A +    + + V
Sbjct: 128 FLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQV 187

Query: 284 ITSFKDTCYIEILPNVERSIRVIYLSFWAEVHYNSIYPA 322
               +    +      E +   +YL +    HYN +Y A
Sbjct: 188 EYVDEMDTALNHHVFPEAATPSVYLLY-KTSHYNILYAA 225

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query351
d1tffa_228 Ubiquitin thiolesterase protein OTUB2 (Otubain-2) 99.83
>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=7.7e-21  Score=173.39  Aligned_cols=96  Identities=19%  Similarity=0.309  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHhhCcccccCcCC--CcHHHHHHh-hccCCCCCchHHHHHHHHHhCCcEEEEEccCCceEEEEcCCCCCCC
Q 018742          227 FVRQQIVAQLKSNPDIYEGYVP--MAYGDYLEK-MSESGEWGDHVTLQAAADLYGVKIFVITSFKDTCYIEILPNVERSI  303 (351)
Q Consensus       227 ~LRk~vV~yL~~npd~y~~fv~--~~~~eYl~~-M~k~g~WGg~iELqAlA~~y~v~I~V~ss~~~~~~iei~P~~~~~~  303 (351)
                      .+|..+..||++|++.|.+|++  +++++||.+ |.+.++|||++||+|+|++|+++|.|+..++....+..........
T Consensus       128 ~lR~l~s~~i~~~~~~y~~Fi~~~~~~~~yc~~~v~~~~~e~d~ieI~aLa~al~v~I~V~~~d~~~~~~~~~~~~~~~~  207 (228)
T d1tffa_         128 FLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFPEAAT  207 (228)
T ss_dssp             HHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-------CCCCCCCSS
T ss_pred             HHHHHHHHHHHHCHHHHHhHhcCCccHHHHHHHHHccccccCCcHHHHHHHHHhCCCEEEEEecCCCCccccccCCCCCC
Confidence            4799999999999999999995  479999985 8999999999999999999999999998876544333222224556


Q ss_pred             CeEEEEecCCCcceeeecCC
Q 018742          304 RVIYLSFWAEVHYNSIYPAG  323 (351)
Q Consensus       304 ~~I~Lsy~~~~HYdSV~~~~  323 (351)
                      +.|+|.| .++|||.|+|.+
T Consensus       208 ~~I~Lly-~pgHYdiLY~~~  226 (228)
T d1tffa_         208 PSVYLLY-KTSHYNILYAAD  226 (228)
T ss_dssp             CSEEEEE-ETTEEEEEEECC
T ss_pred             CEEEEEe-CCCCcccCccCC
Confidence            7899999 578999999875