Citrus Sinensis ID: 018751
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 351 | ||||||
| 356525529 | 340 | PREDICTED: uncharacterized protein LOC10 | 0.965 | 0.997 | 0.772 | 1e-156 | |
| 449462840 | 338 | PREDICTED: uncharacterized protein LOC10 | 0.951 | 0.988 | 0.774 | 1e-153 | |
| 224096296 | 344 | predicted protein [Populus trichocarpa] | 0.977 | 0.997 | 0.744 | 1e-152 | |
| 224083797 | 347 | predicted protein [Populus trichocarpa] | 0.985 | 0.997 | 0.738 | 1e-152 | |
| 356512738 | 340 | PREDICTED: uncharacterized protein LOC10 | 0.965 | 0.997 | 0.778 | 1e-150 | |
| 225438579 | 333 | PREDICTED: uncharacterized protein LOC10 | 0.908 | 0.957 | 0.809 | 1e-147 | |
| 217426816 | 433 | AT5G10010-like protein [Arabidopsis aren | 0.880 | 0.713 | 0.760 | 1e-141 | |
| 297807031 | 433 | hypothetical protein ARALYDRAFT_487826 [ | 0.951 | 0.771 | 0.691 | 1e-141 | |
| 42567760 | 434 | uncharacterized protein [Arabidopsis tha | 0.868 | 0.702 | 0.760 | 1e-139 | |
| 72255605 | 424 | 117M18_4 [Brassica rapa] | 0.948 | 0.785 | 0.693 | 1e-138 |
| >gi|356525529|ref|XP_003531377.1| PREDICTED: uncharacterized protein LOC100782686 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 558 bits (1439), Expect = e-156, Method: Compositional matrix adjust.
Identities = 272/352 (77%), Positives = 303/352 (86%), Gaps = 13/352 (3%)
Query: 1 MRKGAKRKGAAAAAAAAAKASSSSQENHKEEDEQQKTSKAHRAKRVKASKPETEPEYFED 60
MR+GAKRK + QE E KT RAKR K SKP++EPEYFED
Sbjct: 1 MRRGAKRK------------TKQDQEAKHVAAEDNKTEAQPRAKRAKTSKPQSEPEYFED 48
Query: 61 QRNMEDLWKEVFPVGTEWDQLDSVYQFKWNFSNLEDAFEEGGVLYGKKVYLFGCTEPQLV 120
+RN+EDLWKE FPVGTEWDQLD+VYQ+KW+FSNLE+AFEE GVLYGKKVYLFGCTEPQLV
Sbjct: 49 KRNLEDLWKETFPVGTEWDQLDTVYQYKWDFSNLENAFEEDGVLYGKKVYLFGCTEPQLV 108
Query: 121 PYENKNKIVCIPVVVAVVSPFPPSDKIGIKSVQREVEEIVPMKEMKMDWVPYIPLEKRDR 180
++ ++K+V IP VVAVVSPFPPSDKIGI SVQRE EEIVPMK+MKMDWVPYIPLE RD
Sbjct: 109 MFKGESKVVLIPAVVAVVSPFPPSDKIGINSVQREAEEIVPMKQMKMDWVPYIPLEGRDS 168
Query: 181 QVERLKSQIFILSCTQRRSALRHLKVDRLKKFEYCLPYFYQPFKEDEFEQSTVVQIMFPV 240
QV+RLKSQIFILSCTQRRSAL+HLK+DRLKK+EYCLPYFYQPFKEDE EQST VQI++P
Sbjct: 169 QVDRLKSQIFILSCTQRRSALKHLKLDRLKKYEYCLPYFYQPFKEDELEQSTEVQIIYPA 228
Query: 241 EP-PVVCEFDWEFDEVDEFTDKLVEEEALAEDQKDAFKDFVKEKVREAKKANREAKEARR 299
EP PV CEFDWE DE++EFTDKL EEE L+EDQKDAFK+FVK KVREAKKANREA+EAR+
Sbjct: 229 EPKPVFCEFDWELDELEEFTDKLTEEEELSEDQKDAFKEFVKGKVREAKKANREAREARK 288
Query: 300 KAIEEMSEETKAAFESMRFYKFYPVKTPDTPDVSNVKAPFINRYYGKAHEVL 351
KAIEEMSEETKAAFESMRFYKFYPV++PD PDVSNVK+PFINRYYGKAHEVL
Sbjct: 289 KAIEEMSEETKAAFESMRFYKFYPVQSPDAPDVSNVKSPFINRYYGKAHEVL 340
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449462840|ref|XP_004149148.1| PREDICTED: uncharacterized protein LOC101209148 [Cucumis sativus] gi|449529880|ref|XP_004171926.1| PREDICTED: uncharacterized protein LOC101225957 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|224096296|ref|XP_002310600.1| predicted protein [Populus trichocarpa] gi|222853503|gb|EEE91050.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|224083797|ref|XP_002307126.1| predicted protein [Populus trichocarpa] gi|222856575|gb|EEE94122.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|356512738|ref|XP_003525073.1| PREDICTED: uncharacterized protein LOC100805080 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|225438579|ref|XP_002280295.1| PREDICTED: uncharacterized protein LOC100247396 [Vitis vinifera] gi|296082493|emb|CBI21498.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|217426816|gb|ACK44524.1| AT5G10010-like protein [Arabidopsis arenosa] | Back alignment and taxonomy information |
|---|
| >gi|297807031|ref|XP_002871399.1| hypothetical protein ARALYDRAFT_487826 [Arabidopsis lyrata subsp. lyrata] gi|297317236|gb|EFH47658.1| hypothetical protein ARALYDRAFT_487826 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|42567760|ref|NP_196563.2| uncharacterized protein [Arabidopsis thaliana] gi|124300950|gb|ABN04727.1| At5g10010 [Arabidopsis thaliana] gi|332004098|gb|AED91481.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|72255605|gb|AAZ66923.1| 117M18_4 [Brassica rapa] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 351 | ||||||
| TAIR|locus:2184053 | 434 | HIT4 "AT5G10010" [Arabidopsis | 0.920 | 0.744 | 0.597 | 2.4e-106 | |
| TAIR|locus:2177669 | 487 | AT5G64910 "AT5G64910" [Arabido | 0.868 | 0.626 | 0.493 | 5.8e-80 | |
| DICTYBASE|DDB_G0294611 | 611 | DDB_G0294611 "unknown" [Dictyo | 0.467 | 0.268 | 0.247 | 1.4e-07 |
| TAIR|locus:2184053 HIT4 "AT5G10010" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1029 (367.3 bits), Expect = 2.4e-106, Sum P(2) = 2.4e-106
Identities = 193/323 (59%), Positives = 231/323 (71%)
Query: 29 KEEDEQQKTSKAHRAKRVKASKPETEPEYFEDQRNMEDLWKEVFPVGTEWDQLDSVYQFK 88
K+ + + + +AK+ +A+K + EP YFE++R++EDLWK FPVGTEWDQLD++Y+F
Sbjct: 112 KDTEIKDEKKPVPKAKKPRAAKVKEEPVYFEEKRSLEDLWKVAFPVGTEWDQLDALYEFN 171
Query: 89 WNFSNLEDAFEEGGVLYGKKVYLFGCTEPQLVPYENKNKIXXXXXXXXXXXXXXXSDKIG 148
W+F NLE+A EEGG LYGKKVY+FGCTEPQLVPY+ NKI SDKIG
Sbjct: 172 WDFQNLEEALEEGGKLYGKKVYVFGCTEPQLVPYKGANKIVHVPAVVVIESPFPPSDKIG 231
Query: 149 IKSVQREVEEIVPMKEMKMDWVPYIPLEKRDRQVERLKSQIFILSCTQRRSALRHLKVDR 208
I SVQREVEEI+PMK+MKMDW+PYIP+EKRDRQV+++ SQIF L CTQRRSALRH+K D+
Sbjct: 232 ITSVQREVEEIIPMKKMKMDWLPYIPIEKRDRQVDKMNSQIFTLGCTQRRSALRHMKEDQ 291
Query: 209 LKKFEYCLPYFYQPFKEDEFEQSTVVQIMFPVEPPXXXXXXXXXXXXXXXTDKLVEEEAL 268
LKKFEYCLPYFYQPFKEDE EQST VQIMFP EPP DKLVEEEAL
Sbjct: 292 LKKFEYCLPYFYQPFKEDELEQSTEVQIMFPSEPPVVCEFDWEFDELQEFVDKLVEEEAL 351
Query: 269 AEDQKDAFKDFVXXXXXXXXXXXXXXXXXXXXXXXXMSEETKAAFESMRFYKFYPVKTPD 328
+Q D FK++V MSE+TK AF+ M+FYKFYP +PD
Sbjct: 352 PAEQADEFKEYVKEQVRAAKKANREAKDARKKAIEEMSEDTKQAFQKMKFYKFYPQPSPD 411
Query: 329 TPDVSNVKAPFINRYYGKAHEVL 351
TPDVS V++PFINRYYGKAHEVL
Sbjct: 412 TPDVSGVQSPFINRYYGKAHEVL 434
|
|
| TAIR|locus:2177669 AT5G64910 "AT5G64910" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0294611 DDB_G0294611 "unknown" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
No hit with probability above 80.00
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 351 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-04 | |
| 3lvg_D | 190 | LCB, clathrin light chain B; SELF assembly, coated | 9e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 7e-09
Identities = 38/292 (13%), Positives = 76/292 (26%), Gaps = 96/292 (32%)
Query: 81 LDSVYQFKWNFSNLEDAFEEGGVLYGKKVYLFGC-----TEPQLVPYENKNKIVCIPVVV 135
L +V N + +AF C T + V +
Sbjct: 250 LLNV----QN-AKAWNAFN------------LSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 136 AVVSPFPPSD---------KIGIKSVQREVEEIVP---------MKEMKMDWVPYIPLEK 177
P + + + REV P +++ W +
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW----- 347
Query: 178 RDRQVERLKSQIFILSCTQRRSALRHLKVDRLKKFEYCLPYFYQP--FKEDEFEQSTVVQ 235
+ ++L + I S+L L+ +K F + F
Sbjct: 348 KHVNCDKLTTII--------ESSLNVLEPAEYRK------MFDRLSVFPPS-------AH 386
Query: 236 IMFPVEPPVVCEFDW---EFDEVDEFTDKLVEEEALAEDQKDAFKDFVKEKVREAKKANR 292
I P ++ W +V +KL + + + K+ + E K
Sbjct: 387 I-----PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE-STISIPSIYLELKVKLE 440
Query: 293 EAKEARRKAIEEMSEETKAAFESMRFYKFYPVKTPDTPDVSNVKAPFINRYY 344
R ++ Y P T D ++ P++++Y+
Sbjct: 441 NEYALHRSIVDH--------------YNI-----PKTFDSDDLIPPYLDQYF 473
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00