Citrus Sinensis ID: 018751


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-
MRKGAKRKGAAAAAAAAAKASSSSQENHKEEDEQQKTSKAHRAKRVKASKPETEPEYFEDQRNMEDLWKEVFPVGTEWDQLDSVYQFKWNFSNLEDAFEEGGVLYGKKVYLFGCTEPQLVPYENKNKIVCIPVVVAVVSPFPPSDKIGIKSVQREVEEIVPMKEMKMDWVPYIPLEKRDRQVERLKSQIFILSCTQRRSALRHLKVDRLKKFEYCLPYFYQPFKEDEFEQSTVVQIMFPVEPPVVCEFDWEFDEVDEFTDKLVEEEALAEDQKDAFKDFVKEKVREAKKANREAKEARRKAIEEMSEETKAAFESMRFYKFYPVKTPDTPDVSNVKAPFINRYYGKAHEVL
cccHHHHHHHHHHHHHHHHccccccccccHHHHHHcccccccccccccccccccccHHHHcccHHHHHHHHccccccccHHHHHHHcccccccHHHHHHHcccccccEEEEEcccccEEEEcccccEEEEEEEEEEEEcccccccccccccccccccEEEEcccccccccccccHHHHHHHHHHHcccEEEEEEccHHHHHHHccHHHHHHHHHccccccccccccccccccEEEEEEEccccEEcccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccEEEEEccccccccccccccccHHHHHcccccccc
ccccccHHHHHHHcccccccccccccccccHHHcccccccccccccccccccccccHHHHHccHHHHHHHHccccccHHHHHHHHHccccHHHHHHHHHccccEcccEEEEEEccccEEEEcccccEEEEEEEEEEEEccccccHHccHHHHcccccEEEEHHHccccccccccHHHHHccHHHccccEEEEEcHHHHHHHHHccHHHHHHHHHcccHEcccccccccccccEEEEEEcccccEEEcccHcHccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcEEEEEcccccccccccccccHHHHHHHHccccEcc
MRKGAKRKGAAAAAAAAAKassssqenhkeedeqQKTSKAHRakrvkaskpetepeyfedQRNMEDLWKEVfpvgtewdqldSVYQFKWNFSNLEDAFEEGGVLYGKKVylfgctepqlvpyenknkivCIPVVVAvvspfppsdkigikSVQREVEEIVpmkemkmdwvpyiplekrDRQVERLKSQIFILSCTQRRSALRHLKVDRLKkfeyclpyfyqpfkedefeqsTVVQImfpveppvvcefdwefdevdEFTDKLVEEEALAEDQKDAFKDFVKEKVREAKKANREAKEARRKAIEEMSEETKAAFESMrfykfypvktpdtpdvsnvkapfinryygkahevl
MRKGAKRKGAAAAAAAaakassssqenhkeedeqqktskahrakrvkaskpetepeyfedqrnMEDLWKEVFPVGTEWDQLDSVYQFKWNFSNLEDAFEEGGVLYGKKVYLFGCTEPQLVPYENKNKIVCIPVVVAVvspfppsdkigiksvqREVEeivpmkemkmdwvpyIPLEKRDRQVERLKSQIfilsctqrrsaLRHLKVDRLKKFEYCLPYFYQPFKEDEFEQSTVVQIMFPVEPPVVCEFDWEFDEVDEFTDKLVEEEAlaedqkdafKDFVKEKVReakkanreakeaRRKAIEEMSEETKAAFESMRFYkfypvktpdtpdvsnvkaPFINRYYGKAHEVL
MrkgakrkgaaaaaaaaakassssQENHKEEDEQQKTSKAHRAKRVKASKPETEPEYFEDQRNMEDLWKEVFPVGTEWDQLDSVYQFKWNFSNLEDAFEEGGVLYGKKVYLFGCTEPQLVPYENKNKIvcipvvvavvspfppSDKIGIKSVQREVEEIVPMKEMKMDWVPYIPLEKRDRQVERLKSQIFILSCTQRRSALRHLKVDRLKKFEYCLPYFYQPFKEDEFEQSTVVQIMFPVEPPvvcefdwefdevdefTDKLVEEEALAEDQKDAFKDFVkekvreakkanreakearrkaieeMSEETKAAFESMRFYKFYPVKTPDTPDVSNVKAPFINRYYGKAHEVL
****************************************************************EDLWKEVFPVGTEWDQLDSVYQFKWNFSNLEDAFEEGGVLYGKKVYLFGCTEPQLVPYENKNKIVCIPVVVAVVSPFPPSDKIGIKSVQREVEEIVPMKEMKMDWVPYIPLEKRDRQVERLKSQIFILSCTQRRSALRHLKVDRLKKFEYCLPYFYQPFKEDEFEQSTVVQIMFPVEPPVVCEFDWEFDEVDEFTDKLVE**************************************************SMRFYKFYPVKTPDTPDVSNVKAPFINRYYG******
***********************************************************DQRNMEDLWKEVFPVGTEWDQLDSVYQFKWNFSNLEDAFEEGGVLYGKKVYLFGCTEPQLVPYENKNKIVCIPVVVAVVSPFPPSDKIGIKSVQREVEEIVPMKEMKMDWVPYIP*************QIFILSCTQR*********DRLKKFEYCLPYFYQPFKEDEFEQSTVVQIMFPVEPPVVCEFDWEFDEVDEFTDKLVEEEALAEDQKDAFKDFV******************************AAFESMRFYKFYPVKTPDTPDVSNVKAPFINRYYGK***V*
**********************************************************EDQRNMEDLWKEVFPVGTEWDQLDSVYQFKWNFSNLEDAFEEGGVLYGKKVYLFGCTEPQLVPYENKNKIVCIPVVVAVVSPFPPSDKIGIKSVQREVEEIVPMKEMKMDWVPYIPLEKRDRQVERLKSQIFILSCTQRRSALRHLKVDRLKKFEYCLPYFYQPFKEDEFEQSTVVQIMFPVEPPVVCEFDWEFDEVDEFTDKLVEEEALAEDQKDAFKDFVKEKVRE***********************KAAFESMRFYKFYPVKTPDTPDVSNVKAPFINRYYGKAHEVL
******************************************************PEYFEDQRNMEDLWKEVFPVGTEWDQLDSVYQFKWNFSNLEDAFEEGGVLYGKKVYLFGCTEPQLVPYENKNKIVCIPVVVAVVSPFPPSDKIGIKSVQREVEEIVPMKEMKMDWVPYIPLEKRDRQVERLKSQIFILSCTQRRSALRHLKVDRLKKFEYCLPYFYQPFKEDEFEQSTVVQIMFPVEPPVVCEFDWEFDEVDEFTDKLVEEEALAEDQKDAFKDFVKEKVREAKKANREAKEARRKAIEEMSEETKAAFESMRFYKFYPVKTPDTPDVSNVKAPFINRYYGKAH***
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SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRKGAKRKGAAAAAAAAAKASSSSQENHKEEDEQQKTSKAHRAKRVKASKPETEPEYFEDQRNMEDLWKEVFPVGTEWDQLDSVYQFKWNFSNLEDAFEEGGVLYGKKVYLFGCTEPQLVPYENKNKIVCIPVVVAVVSPFPPSDKIGIKSVQREVEEIVPMKEMKMDWVPYIPLEKRDRQVERLKSQIFILSCTQRRSALRHLKVDRLKKFEYCLPYFYQPFKEDEFEQSTVVQIMFPVEPPVVCEFDWEFDExxxxxxxxxxxxxxxxxxxxxFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAFESMRFYKFYPVKTPDTPDVSNVKAPFINRYYGKAHEVL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query351
356525529340 PREDICTED: uncharacterized protein LOC10 0.965 0.997 0.772 1e-156
449462840338 PREDICTED: uncharacterized protein LOC10 0.951 0.988 0.774 1e-153
224096296344 predicted protein [Populus trichocarpa] 0.977 0.997 0.744 1e-152
224083797347 predicted protein [Populus trichocarpa] 0.985 0.997 0.738 1e-152
356512738340 PREDICTED: uncharacterized protein LOC10 0.965 0.997 0.778 1e-150
225438579333 PREDICTED: uncharacterized protein LOC10 0.908 0.957 0.809 1e-147
217426816433 AT5G10010-like protein [Arabidopsis aren 0.880 0.713 0.760 1e-141
297807031433 hypothetical protein ARALYDRAFT_487826 [ 0.951 0.771 0.691 1e-141
42567760434 uncharacterized protein [Arabidopsis tha 0.868 0.702 0.760 1e-139
72255605424 117M18_4 [Brassica rapa] 0.948 0.785 0.693 1e-138
>gi|356525529|ref|XP_003531377.1| PREDICTED: uncharacterized protein LOC100782686 [Glycine max] Back     alignment and taxonomy information
 Score =  558 bits (1439), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 272/352 (77%), Positives = 303/352 (86%), Gaps = 13/352 (3%)

Query: 1   MRKGAKRKGAAAAAAAAAKASSSSQENHKEEDEQQKTSKAHRAKRVKASKPETEPEYFED 60
           MR+GAKRK            +   QE      E  KT    RAKR K SKP++EPEYFED
Sbjct: 1   MRRGAKRK------------TKQDQEAKHVAAEDNKTEAQPRAKRAKTSKPQSEPEYFED 48

Query: 61  QRNMEDLWKEVFPVGTEWDQLDSVYQFKWNFSNLEDAFEEGGVLYGKKVYLFGCTEPQLV 120
           +RN+EDLWKE FPVGTEWDQLD+VYQ+KW+FSNLE+AFEE GVLYGKKVYLFGCTEPQLV
Sbjct: 49  KRNLEDLWKETFPVGTEWDQLDTVYQYKWDFSNLENAFEEDGVLYGKKVYLFGCTEPQLV 108

Query: 121 PYENKNKIVCIPVVVAVVSPFPPSDKIGIKSVQREVEEIVPMKEMKMDWVPYIPLEKRDR 180
            ++ ++K+V IP VVAVVSPFPPSDKIGI SVQRE EEIVPMK+MKMDWVPYIPLE RD 
Sbjct: 109 MFKGESKVVLIPAVVAVVSPFPPSDKIGINSVQREAEEIVPMKQMKMDWVPYIPLEGRDS 168

Query: 181 QVERLKSQIFILSCTQRRSALRHLKVDRLKKFEYCLPYFYQPFKEDEFEQSTVVQIMFPV 240
           QV+RLKSQIFILSCTQRRSAL+HLK+DRLKK+EYCLPYFYQPFKEDE EQST VQI++P 
Sbjct: 169 QVDRLKSQIFILSCTQRRSALKHLKLDRLKKYEYCLPYFYQPFKEDELEQSTEVQIIYPA 228

Query: 241 EP-PVVCEFDWEFDEVDEFTDKLVEEEALAEDQKDAFKDFVKEKVREAKKANREAKEARR 299
           EP PV CEFDWE DE++EFTDKL EEE L+EDQKDAFK+FVK KVREAKKANREA+EAR+
Sbjct: 229 EPKPVFCEFDWELDELEEFTDKLTEEEELSEDQKDAFKEFVKGKVREAKKANREAREARK 288

Query: 300 KAIEEMSEETKAAFESMRFYKFYPVKTPDTPDVSNVKAPFINRYYGKAHEVL 351
           KAIEEMSEETKAAFESMRFYKFYPV++PD PDVSNVK+PFINRYYGKAHEVL
Sbjct: 289 KAIEEMSEETKAAFESMRFYKFYPVQSPDAPDVSNVKSPFINRYYGKAHEVL 340




Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462840|ref|XP_004149148.1| PREDICTED: uncharacterized protein LOC101209148 [Cucumis sativus] gi|449529880|ref|XP_004171926.1| PREDICTED: uncharacterized protein LOC101225957 [Cucumis sativus] Back     alignment and taxonomy information
>gi|224096296|ref|XP_002310600.1| predicted protein [Populus trichocarpa] gi|222853503|gb|EEE91050.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224083797|ref|XP_002307126.1| predicted protein [Populus trichocarpa] gi|222856575|gb|EEE94122.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356512738|ref|XP_003525073.1| PREDICTED: uncharacterized protein LOC100805080 [Glycine max] Back     alignment and taxonomy information
>gi|225438579|ref|XP_002280295.1| PREDICTED: uncharacterized protein LOC100247396 [Vitis vinifera] gi|296082493|emb|CBI21498.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|217426816|gb|ACK44524.1| AT5G10010-like protein [Arabidopsis arenosa] Back     alignment and taxonomy information
>gi|297807031|ref|XP_002871399.1| hypothetical protein ARALYDRAFT_487826 [Arabidopsis lyrata subsp. lyrata] gi|297317236|gb|EFH47658.1| hypothetical protein ARALYDRAFT_487826 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|42567760|ref|NP_196563.2| uncharacterized protein [Arabidopsis thaliana] gi|124300950|gb|ABN04727.1| At5g10010 [Arabidopsis thaliana] gi|332004098|gb|AED91481.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|72255605|gb|AAZ66923.1| 117M18_4 [Brassica rapa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query351
TAIR|locus:2184053434 HIT4 "AT5G10010" [Arabidopsis 0.920 0.744 0.597 2.4e-106
TAIR|locus:2177669487 AT5G64910 "AT5G64910" [Arabido 0.868 0.626 0.493 5.8e-80
DICTYBASE|DDB_G0294611 611 DDB_G0294611 "unknown" [Dictyo 0.467 0.268 0.247 1.4e-07
TAIR|locus:2184053 HIT4 "AT5G10010" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1029 (367.3 bits), Expect = 2.4e-106, Sum P(2) = 2.4e-106
 Identities = 193/323 (59%), Positives = 231/323 (71%)

Query:    29 KEEDEQQKTSKAHRAKRVKASKPETEPEYFEDQRNMEDLWKEVFPVGTEWDQLDSVYQFK 88
             K+ + + +     +AK+ +A+K + EP YFE++R++EDLWK  FPVGTEWDQLD++Y+F 
Sbjct:   112 KDTEIKDEKKPVPKAKKPRAAKVKEEPVYFEEKRSLEDLWKVAFPVGTEWDQLDALYEFN 171

Query:    89 WNFSNLEDAFEEGGVLYGKKVYLFGCTEPQLVPYENKNKIXXXXXXXXXXXXXXXSDKIG 148
             W+F NLE+A EEGG LYGKKVY+FGCTEPQLVPY+  NKI               SDKIG
Sbjct:   172 WDFQNLEEALEEGGKLYGKKVYVFGCTEPQLVPYKGANKIVHVPAVVVIESPFPPSDKIG 231

Query:   149 IKSVQREVEEIVPMKEMKMDWVPYIPLEKRDRQVERLKSQIFILSCTQRRSALRHLKVDR 208
             I SVQREVEEI+PMK+MKMDW+PYIP+EKRDRQV+++ SQIF L CTQRRSALRH+K D+
Sbjct:   232 ITSVQREVEEIIPMKKMKMDWLPYIPIEKRDRQVDKMNSQIFTLGCTQRRSALRHMKEDQ 291

Query:   209 LKKFEYCLPYFYQPFKEDEFEQSTVVQIMFPVEPPXXXXXXXXXXXXXXXTDKLVEEEAL 268
             LKKFEYCLPYFYQPFKEDE EQST VQIMFP EPP                DKLVEEEAL
Sbjct:   292 LKKFEYCLPYFYQPFKEDELEQSTEVQIMFPSEPPVVCEFDWEFDELQEFVDKLVEEEAL 351

Query:   269 AEDQKDAFKDFVXXXXXXXXXXXXXXXXXXXXXXXXMSEETKAAFESMRFYKFYPVKTPD 328
               +Q D FK++V                        MSE+TK AF+ M+FYKFYP  +PD
Sbjct:   352 PAEQADEFKEYVKEQVRAAKKANREAKDARKKAIEEMSEDTKQAFQKMKFYKFYPQPSPD 411

Query:   329 TPDVSNVKAPFINRYYGKAHEVL 351
             TPDVS V++PFINRYYGKAHEVL
Sbjct:   412 TPDVSGVQSPFINRYYGKAHEVL 434


GO:0003674 "molecular_function" evidence=ND
GO:0005737 "cytoplasm" evidence=ISM
GO:0005730 "nucleolus" evidence=IDA
GO:0010286 "heat acclimation" evidence=IMP
GO:0010369 "chromocenter" evidence=IDA
TAIR|locus:2177669 AT5G64910 "AT5G64910" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0294611 DDB_G0294611 "unknown" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query351
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 9e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 56.4 bits (135), Expect = 7e-09
 Identities = 38/292 (13%), Positives = 76/292 (26%), Gaps = 96/292 (32%)

Query: 81  LDSVYQFKWNFSNLEDAFEEGGVLYGKKVYLFGC-----TEPQLVPYENKNKIVCIPVVV 135
           L +V     N +   +AF               C     T  + V             + 
Sbjct: 250 LLNV----QN-AKAWNAFN------------LSCKILLTTRFKQVTDFLSAATTTHISLD 292

Query: 136 AVVSPFPPSD---------KIGIKSVQREVEEIVP---------MKEMKMDWVPYIPLEK 177
                  P +             + + REV    P         +++    W  +     
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW----- 347

Query: 178 RDRQVERLKSQIFILSCTQRRSALRHLKVDRLKKFEYCLPYFYQP--FKEDEFEQSTVVQ 235
           +    ++L + I         S+L  L+    +K       F +   F            
Sbjct: 348 KHVNCDKLTTII--------ESSLNVLEPAEYRK------MFDRLSVFPPS-------AH 386

Query: 236 IMFPVEPPVVCEFDW---EFDEVDEFTDKLVEEEALAEDQKDAFKDFVKEKVREAKKANR 292
           I     P ++    W      +V    +KL +   + +  K+     +     E K    
Sbjct: 387 I-----PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE-STISIPSIYLELKVKLE 440

Query: 293 EAKEARRKAIEEMSEETKAAFESMRFYKFYPVKTPDTPDVSNVKAPFINRYY 344
                 R  ++               Y       P T D  ++  P++++Y+
Sbjct: 441 NEYALHRSIVDH--------------YNI-----PKTFDSDDLIPPYLDQYF 473


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00