Citrus Sinensis ID: 018759

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-
Protein Sequence
MEQRQRQRQHLQHPTSTSKAIDPENVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAASKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNKGTFNLRNRINRSWIDYIVRCTCSLCLLDTS
Secondary Structure (PSIPRED)
cHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHcccccccccccccccccEEcHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEccccccccccccccccccEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccEEccccccEEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEcccccccccc
Coil and Loop (DISEMBL)
meqrqrqrqhlqhptstskaidpenvkvieWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMIsqvsflypvkilvgpkqeqelesfpsgnrsgnsaaskpvnpgsltiLGLHLtilpftkmslftdkkeVQRSATALGYIAHVVSLIASYLevplryplrlggshtyindyapsieptsdlssnialstntkpaefplflegqdATRAAYAVFLLNKgtfnlrnriNRSWIDYIVRCTCslclldts
Flexible Loop (DISEMBL)
meqrqrqrqhlqhptstskaidpenvKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVkaeslkrsneleeMRERLEARRLLMekmsmrskvekedaknqeerLSMEVRSLLVAGTALSVARKRLQEsnrllagekgyGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAASKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLlnkgtfnlrnriNRSWIDYIVRCTCSLCLLDTS
Low Complexity Region (SEG)
MEqrqrqrqHLQHPTSTSKAIDPENVKVIEWEDYDQElarlwslssalsqaDDkkqtlqqklqsliqVKAESLKRSNeleemrerlearrllmeKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAASKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNKGTFNLRNRINRSWIDYIVRCTCSLCLLDTS
Disordered region (IsUnstruct)
*************************VKVIEWEDYDQELARLWSL****************************************************************************LLVAGTALSVARK******RLLAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVG****************************SLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSI*****************PAEFPLFLEGQDATRAAYAVFLLNKGTFNLRNRINRSWIDYIVRCTCSLCLL***
Disordered Region (DISOPRED)
***********************************QELARLWSLSSALS*************************************************************************************************GYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVG**************************PGSLTILGLHLTILPFTKM***TDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSI*********************PLFLEGQDATRAAYAVFLLNKGTFNLRNRINRSWIDYIVRCTCSLCLLD**
Disordered Region (DISEMBL)
*****************SKAIDPENVKVIEWEDYDQELARLWSLSSA************QKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSM**************RLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQ********************PVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNKGTFNLRNRINRSWIDYIVRCTCSLCLLDTS
Disordered Region (DISPRO)
************************NVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAASKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSI*****************PAEFPLFLEGQDATRAAYAVFLLNKGTFNLRNRINRSWIDYIVRCTCSLCL****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEQRQRQRQHLQHPTSTSKAIDPENVKVIEWEDYDQELARLWSLSSAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAASKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNKGTFNLRNRINRSWIDYIVRCTCSLCLLDTS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	351	2.2.26 [Sep-21-2011]
Q9P2Y5	699	UV radiation resistance-a	yes	no	0.663	0.333	0.260	7e-12

>sp|Q9P2Y5|UVRAG_HUMAN UV radiation resistance-associated gene protein OS=Homo sapiens GN=UVRAG PE=1 SV=1

 Score = 72.0 bits (175), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 130/299 (43%), Gaps = 66/299 (22%)

Query: 38  LARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMS 97
           L RL     A+ Q     Q   QK+   I+ K      SNEL++  E L+ + L+++   
Sbjct: 196 LLRLHRAQCAIKQT----QVTVQKIGKEIEEKLRLTSTSNELKKKSECLQLKILVLQNEL 251

Query: 98  MRSK--VEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQ-------ESNRLLAGEKGY 148
            R K  + +E A   +++++++ +     G+A S    +LQ       E  +    ++  
Sbjct: 252 ERQKKALGREVALLHKQQIALQDK-----GSAFSAEHLKLQLQKESLNELRKECTAKREL 306

Query: 149 GHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAASKPVNPG 208
                 Q  +R RQ  ++S++S++YP+ +       +  + F  G +  NS   +  + G
Sbjct: 307 FLKTNAQLTIRCRQ--LLSELSYIYPIDL------NEHKDYFVCGVKLPNSEDFQAKDDG 358

Query: 209 SLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGS 268
           S+                           A ALGY AH+VS+I+ +L+VPLRYP+   GS
Sbjct: 359 SI---------------------------AVALGYTAHLVSMISFFLQVPLRYPIIHKGS 391

Query: 269 HTYINDYAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNKGTFNLR 327
            + I D             NI      K  EFPL+ +G +  +  Y V+LLNK    LR
Sbjct: 392 RSTIKD-------------NINDKLTEKEREFPLYPKGGEKLQFDYGVYLLNKNIAQLR 437

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	351
449442479	359	PREDICTED: UV radiation resistance-assoc	0.883	0.863	0.720	1e-124
255554070	356	conserved hypothetical protein [Ricinus	0.931	0.918	0.680	1e-123
449505315	359	PREDICTED: LOW QUALITY PROTEIN: UV radia	0.883	0.863	0.713	1e-123
225433608	345	PREDICTED: UV radiation resistance-assoc	0.888	0.904	0.707	1e-120
224141253	333	predicted protein [Populus trichocarpa]	0.868	0.915	0.683	1e-111
356525229	354	PREDICTED: uncharacterized protein LOC10	0.880	0.872	0.661	1e-111
297823059	353	hypothetical protein ARALYDRAFT_482212 [	0.874	0.869	0.639	1e-108
30685426	352	uncharacterized protein [Arabidopsis tha	0.871	0.869	0.636	1e-107
357518775	355	UV radiation resistance-associated gene	0.883	0.873	0.636	1e-107
79324025	276	uncharacterized protein [Arabidopsis tha	0.700	0.891	0.633	1e-83

>gi|449442479|ref|XP_004139009.1| PREDICTED: UV radiation resistance-associated gene protein-like [Cucumis sativus]

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 224/311 (72%), Positives = 257/311 (82%), Gaps = 1/311 (0%)

Query: 22  DPENVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEE 81
           DPEN KVIEWED++QELARLWSLSSAL +A   K++L+QKL SLIQV +ES+ RSNEL E
Sbjct: 21  DPENAKVIEWEDFEQELARLWSLSSALQEAKQHKESLKQKLDSLIQVDSESVSRSNELAE 80

Query: 82  MRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRL 141
           MRE+LEAR+ ++E M MRSK+  ED K QEE LS+EVRSLLVAGTALS ARKRLQESNRL
Sbjct: 81  MREKLEARKCIVENMGMRSKLVSEDVKKQEESLSIEVRSLLVAGTALSKARKRLQESNRL 140

Query: 142 LAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAA 201
           L+GE+GY  L+ LQKMLR RQQFM+SQV+FLYPVKIL GP  +QELESFPS +R GNS+ 
Sbjct: 141 LSGEEGYDRLKSLQKMLRRRQQFMVSQVAFLYPVKILTGPANDQELESFPSTSRLGNSSG 200

Query: 202 SKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRY 261
           SKPVN GSLTILGL L +LPF KMS F+DKKE QRSA+ALGY+AH VSLI+SYL+VPLRY
Sbjct: 201 SKPVNHGSLTILGLSLNVLPFKKMSFFSDKKETQRSASALGYVAHAVSLISSYLKVPLRY 260

Query: 262 PLRLGGSHTYINDYAPSIEPTSDLS-SNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLN 320
           PLRLGGS +Y+ DYAPSIEPTS ++ S    STN K  EFPLFL+GQD TRAAYAVFLLN
Sbjct: 261 PLRLGGSRSYLCDYAPSIEPTSSVTLSTTQPSTNMKHVEFPLFLDGQDTTRAAYAVFLLN 320

Query: 321 KGTFNLRNRIN 331
           K    L N I 
Sbjct: 321 KDLEQLLNFIG 331

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554070|ref|XP_002518075.1| conserved hypothetical protein [Ricinus communis] gi|223542671|gb|EEF44208.1| conserved hypothetical protein [Ricinus communis]

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 226/332 (68%), Positives = 270/332 (81%), Gaps = 5/332 (1%)

Query: 1   MEQRQRQRQHLQHPTSTSKAIDPENVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQ 60
           ME+ ++    L+ P  TS++   E VK+I+WEDY+QE ARLWSLSSAL +A++KK  L+Q
Sbjct: 1   MEEEKKATLSLE-PRKTSES---EKVKLIQWEDYEQEAARLWSLSSALKEAEEKKLNLKQ 56

Query: 61  KLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRS 120
           KL S IQVKAESL R NELEEMR++LEA+ L +E +S R+KV  E+AK +E RLSMEVRS
Sbjct: 57  KLNSFIQVKAESLSRLNELEEMRQKLEAKELAIESISARTKVAAENAKKEENRLSMEVRS 116

Query: 121 LLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVG 180
           LLVAGTALSV+ K+LQES R ++GE+GYG L+ LQKMLR+RQQ+ ISQVS L+PVKI  G
Sbjct: 117 LLVAGTALSVSSKQLQESKRSVSGERGYGRLRNLQKMLRIRQQYTISQVSLLFPVKISAG 176

Query: 181 PKQEQELESFPSGNRSGNSAASKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATA 240
           P +EQELESFP+ ++SGN   SKPVN GSLTILGLHLT+LPFTK+S FTDKKE+Q+SATA
Sbjct: 177 PSEEQELESFPNTSKSGNYTGSKPVNQGSLTILGLHLTMLPFTKISFFTDKKEIQKSATA 236

Query: 241 LGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPT-SDLSSNIALSTNTKPAE 299
           LGY+AH VSLIASYLEVPLRYP+RLGGS +YINDYAPS EPT  +LS + + STN KP E
Sbjct: 237 LGYVAHAVSLIASYLEVPLRYPVRLGGSRSYINDYAPSAEPTLPELSLSASSSTNVKPVE 296

Query: 300 FPLFLEGQDATRAAYAVFLLNKGTFNLRNRIN 331
           FPLFLEGQD TRAAYAVFLLNK    L N I 
Sbjct: 297 FPLFLEGQDTTRAAYAVFLLNKDLEQLLNYIG 328

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449505315|ref|XP_004162433.1| PREDICTED: LOW QUALITY PROTEIN: UV radiation resistance-associated gene protein-like [Cucumis sativus]

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 222/311 (71%), Positives = 257/311 (82%), Gaps = 1/311 (0%)

Query: 22  DPENVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEE 81
           DPEN KVIEWED++QELARLWSLSSAL +A   K++L+QKL SLIQV +ES+ RSNEL E
Sbjct: 21  DPENAKVIEWEDFEQELARLWSLSSALQEAKQHKESLKQKLDSLIQVDSESVSRSNELAE 80

Query: 82  MRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRL 141
           MRE+LEAR+ ++E M MRSK+  ED K QEE LS+EVRSLLVAGTALS ARKRLQESNRL
Sbjct: 81  MREKLEARKCIVENMGMRSKLVSEDVKKQEESLSIEVRSLLVAGTALSKARKRLQESNRL 140

Query: 142 LAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAA 201
           L+GE+GY  L+ LQKMLR RQQFM+SQV+FLYPVKIL GP  +QELESFPS +R GNS+ 
Sbjct: 141 LSGEEGYDRLKSLQKMLRRRQQFMVSQVAFLYPVKILTGPANDQELESFPSTSRLGNSSG 200

Query: 202 SKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRY 261
           SKPVN GSLTILGL+L +LPF KMS F+DKKE QRSA+ALGY+AH VSLI+SYL+VPLRY
Sbjct: 201 SKPVNHGSLTILGLNLNVLPFXKMSFFSDKKETQRSASALGYVAHAVSLISSYLKVPLRY 260

Query: 262 PLRLGGSHTYINDYAPSIEPTSDLS-SNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLN 320
           PLRLGGS +Y+ DYAPSIEPTS ++ S    STN K  E PLFL+GQD TRAAYAVFLLN
Sbjct: 261 PLRLGGSRSYLCDYAPSIEPTSSVTLSTTQPSTNMKHVEXPLFLDGQDTTRAAYAVFLLN 320

Query: 321 KGTFNLRNRIN 331
           +    L N I 
Sbjct: 321 RDLEQLLNFIG 331

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433608|ref|XP_002273954.1| PREDICTED: UV radiation resistance-associated gene protein [Vitis vinifera] gi|298205154|emb|CBI17213.3| unnamed protein product [Vitis vinifera]

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 222/314 (70%), Positives = 260/314 (82%), Gaps = 2/314 (0%)

Query: 18  SKAIDPENVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSN 77
           ++++  ENVKVIEWED++QELARLWSLSSAL +A +KK +LQ+KL SL+QVKAESL RSN
Sbjct: 4   NQSLSSENVKVIEWEDFEQELARLWSLSSALKEAKEKKDSLQEKLNSLLQVKAESLNRSN 63

Query: 78  ELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQE 137
           ELEEM++RL+ R+ +   MSM+SK+ +ED K +EERL +EVRSLLVAGTALSV+R RLQ+
Sbjct: 64  ELEEMQQRLDDRKFVTGDMSMQSKIVEEDIKKKEERLGLEVRSLLVAGTALSVSRNRLQD 123

Query: 138 SNRLLAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSG 197
           +NRLL+GE+GY HL+ L+KMLR+RQQ MISQVSFLYPVK  +G   EQELESFPS +R+G
Sbjct: 124 ANRLLSGERGYVHLKNLEKMLRVRQQHMISQVSFLYPVKPSIG-SLEQELESFPSSSRAG 182

Query: 198 NSAASKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEV 257
           N+  SKP+N GSLTI GL L +L   KMS FTDKKEVQRSATALGY+AH VSLIASYLEV
Sbjct: 183 NAVGSKPLNEGSLTISGLQLNMLAIKKMSFFTDKKEVQRSATALGYVAHAVSLIASYLEV 242

Query: 258 PLRYPLRLGGSHTYINDYAPSIEPT-SDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAV 316
           PLRYPLRLGGS +YINDYAPSIEPT +D  SN  L TN K  EFPLFLEGQD TRAAYAV
Sbjct: 243 PLRYPLRLGGSRSYINDYAPSIEPTPTDSVSNSLLLTNLKHIEFPLFLEGQDTTRAAYAV 302

Query: 317 FLLNKGTFNLRNRI 330
           FLLNK    L N I
Sbjct: 303 FLLNKDLEQLLNFI 316

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141253|ref|XP_002323989.1| predicted protein [Populus trichocarpa] gi|222866991|gb|EEF04122.1| predicted protein [Populus trichocarpa]

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 212/310 (68%), Positives = 250/310 (80%), Gaps = 5/310 (1%)

Query: 22  DPENVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEE 81
           + E  K IEWEDY+ E+ARLWSLSS+L+++  KKQ  +QKL+SLIQVK E+L R N+LEE
Sbjct: 2   ESEKEKFIEWEDYEHEVARLWSLSSSLNESKQKKQNFEQKLRSLIQVKEEALSRLNKLEE 61

Query: 82  MRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRL 141
           M+ER+EAR+L++E++  +SKV  E++  +EERLS EVRSLLVAGTALSVA K+LQ+S R 
Sbjct: 62  MKERVEARKLVIERIKGQSKVAAENSTKEEERLSSEVRSLLVAGTALSVASKQLQDSRRS 121

Query: 142 LAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAA 201
           LAGE+GY  L KLQK LR+RQQFMISQVS LYP+KI  GP +EQELESFPS N  G    
Sbjct: 122 LAGERGYVRLTKLQKKLRLRQQFMISQVSLLYPIKISAGPSEEQELESFPSRNYVG---- 177

Query: 202 SKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRY 261
           SKPVN GSLTILGLHLT+ PFTKMS FTDKKEVQRSA+ALG++AH VSLIASYLEVPLRY
Sbjct: 178 SKPVNQGSLTILGLHLTMAPFTKMSFFTDKKEVQRSASALGHVAHAVSLIASYLEVPLRY 237

Query: 262 PLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNK 321
            LRLGGS++YI D APS+E +  LSS +  + NTKP EFPLFLEGQD TRAAYAVFLLNK
Sbjct: 238 SLRLGGSNSYIIDCAPSVESSDLLSSTLLTA-NTKPVEFPLFLEGQDTTRAAYAVFLLNK 296

Query: 322 GTFNLRNRIN 331
               L N I 
Sbjct: 297 DLEQLLNYIG 306

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525229|ref|XP_003531229.1| PREDICTED: uncharacterized protein LOC100794161 [Glycine max]

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 205/310 (66%), Positives = 250/310 (80%), Gaps = 1/310 (0%)

Query: 22  DPENVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEE 81
           DP++VKVI+W+D+  +LARL SLSSAL +A++KK+ LQ KL+SLIQV AESL R NELEE
Sbjct: 16  DPDHVKVIQWDDFQHDLARLASLSSALHEANEKKRNLQHKLESLIQVNAESLGRLNELEE 75

Query: 82  MRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRL 141
           MR++LE++++LME MS+ S++ KE+A  QEE+LS  V+SLLV+G ALSV  + LQES+RL
Sbjct: 76  MRQKLESKKMLMENMSICSRLAKEEASKQEEQLSGAVQSLLVSGGALSVTSRNLQESSRL 135

Query: 142 LAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAA 201
           L+ E GY HL+KLQKMLR RQQ+M SQ+S LYPVKILVGP QEQELE++P G+ +G SA 
Sbjct: 136 LSEENGYVHLRKLQKMLRKRQQYMTSQISMLYPVKILVGPAQEQELEAYPLGSLAGTSAG 195

Query: 202 SKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRY 261
            KP+N GSLTI GLHL +L F KMS FTDKKE+Q SATALGY+AH VSLIASYL+VPLRY
Sbjct: 196 LKPINQGSLTIHGLHLNVLSFRKMSFFTDKKEIQNSATALGYVAHAVSLIASYLQVPLRY 255

Query: 262 PLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNK 321
           PLRLG SH+YI D APS E TS  +S+ A + N K  +FPLFLEGQD TRAAYAVFLLNK
Sbjct: 256 PLRLGASHSYIIDNAPSTELTSSEASSNA-NINAKHVKFPLFLEGQDTTRAAYAVFLLNK 314

Query: 322 GTFNLRNRIN 331
               L N I+
Sbjct: 315 DLEQLLNFID 324

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823059|ref|XP_002879412.1| hypothetical protein ARALYDRAFT_482212 [Arabidopsis lyrata subsp. lyrata] gi|297325251|gb|EFH55671.1| hypothetical protein ARALYDRAFT_482212 [Arabidopsis lyrata subsp. lyrata]

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 199/311 (63%), Positives = 241/311 (77%), Gaps = 4/311 (1%)

Query: 22  DPENVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEE 81
           D E+VK+IEWE++D EL RLWSLSSAL  A +KKQ LQ KL+SLIQV  ESL+R+NELEE
Sbjct: 17  DREDVKIIEWEEFDHELTRLWSLSSALKLATEKKQILQPKLESLIQVSTESLRRTNELEE 76

Query: 82  MRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRL 141
           MR+RLEAR+LL++K S+  KV ++D K +E+ LS EVRSLLV GT LS+A+ +LQESN  
Sbjct: 77  MRQRLEARKLLVDKTSIACKVIEQDVKKKEDNLSTEVRSLLVGGTTLSIAKSKLQESNCQ 136

Query: 142 LAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAA 201
           L GE GY HL+ +   LR RQQFMISQVSF+YP+KI  GP Q+QELESFP G+R      
Sbjct: 137 LEGESGYAHLKIVTNKLRKRQQFMISQVSFIYPLKIEAGPSQDQELESFPGGSR---LVG 193

Query: 202 SKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRY 261
           +KP++ GS+ ILGL  ++ PFT+MS FTDKKEVQ+SATALGY+AH VSLIA YL +P+RY
Sbjct: 194 TKPLSQGSVRILGLPFSMAPFTRMSFFTDKKEVQKSATALGYVAHAVSLIAPYLRMPIRY 253

Query: 262 PLRLGGSHTYINDYAPSIEPT-SDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLN 320
           PLRLGGS TYI DYAP IEP+ SD+S    LS N+   EFPLFL+GQD TRAAYAVFLLN
Sbjct: 254 PLRLGGSKTYIRDYAPYIEPSQSDMSPITTLSQNSNFVEFPLFLDGQDTTRAAYAVFLLN 313

Query: 321 KGTFNLRNRIN 331
           K    L N + 
Sbjct: 314 KNIEQLLNFVG 324

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30685426|ref|NP_850197.1| uncharacterized protein [Arabidopsis thaliana] gi|18700113|gb|AAL77668.1| At2g32760/F24L7.10 [Arabidopsis thaliana] gi|62320642|dbj|BAD95308.1| hypothetical protein [Arabidopsis thaliana] gi|94442409|gb|ABF18992.1| At2g32760 [Arabidopsis thaliana] gi|330253639|gb|AEC08733.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 198/311 (63%), Positives = 239/311 (76%), Gaps = 5/311 (1%)

Query: 22  DPENVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEE 81
           D E+ K+IEWE++D EL RLWSLSSA+  A ++KQ LQ KL+SLIQV  ESL+R+NELEE
Sbjct: 17  DREDGKIIEWEEFDHELTRLWSLSSAMKLATERKQILQPKLESLIQVSTESLRRTNELEE 76

Query: 82  MRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRL 141
           MR+RLEAR+LL++K S+  KV ++D K +EE LS EVRSLLV GT LS+A+ +LQESN  
Sbjct: 77  MRQRLEARKLLVDKTSVACKVTEQDVKKKEENLSTEVRSLLVGGTTLSIAKSKLQESNCQ 136

Query: 142 LAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAA 201
           L GE GY HL+ +   LR RQQFM+SQVSF+YP+KI  GP Q+QELESFP G+R G    
Sbjct: 137 LEGESGYAHLKIVTNKLRKRQQFMVSQVSFIYPLKIEAGPSQDQELESFPGGSRLG---- 192

Query: 202 SKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRY 261
           +KP++ GS+ ILGL  ++ PFTKMS FTDKKEVQ+SATALGY+AH VSLIA YL VP+RY
Sbjct: 193 TKPLSQGSVRILGLPFSMAPFTKMSFFTDKKEVQKSATALGYVAHAVSLIAPYLRVPIRY 252

Query: 262 PLRLGGSHTYINDYAPSIEPT-SDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLN 320
           PL LGGS TYI DYAP IEP+ SD+S    LS N    EFPLFL+GQD TRAAYAVFLLN
Sbjct: 253 PLCLGGSKTYIRDYAPYIEPSPSDMSPITTLSQNINFVEFPLFLDGQDTTRAAYAVFLLN 312

Query: 321 KGTFNLRNRIN 331
           K    L N + 
Sbjct: 313 KNIEQLLNFVG 323

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357518775|ref|XP_003629676.1| UV radiation resistance-associated gene protein [Medicago truncatula] gi|355523698|gb|AET04152.1| UV radiation resistance-associated gene protein [Medicago truncatula]

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 198/311 (63%), Positives = 247/311 (79%), Gaps = 1/311 (0%)

Query: 22  DPENVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEE 81
           DP++V++IEWED++ +LARL SLSSAL+QA +KK+ LQ KL+SLIQ   ESL R NELEE
Sbjct: 15  DPDDVRLIEWEDFEHDLARLSSLSSALNQAKEKKRNLQHKLESLIQFNGESLGRLNELEE 74

Query: 82  MRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRL 141
           MR++LE+++L+ME MS+RS++ KE A  QEE+LS  ++SLLVAG  LSV  + LQES+RL
Sbjct: 75  MRQKLESKKLMMENMSIRSRLAKEAAGKQEEQLSGALQSLLVAGGTLSVTSRNLQESSRL 134

Query: 142 LAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAA 201
           ++ E GY  L+ LQKMLRMRQQ+M SQ+S LYPVK+LV P QEQELE++P G+ +G    
Sbjct: 135 MSEENGYVRLRNLQKMLRMRQQYMASQISMLYPVKLLVEPAQEQELEAYPLGSPAGTPPE 194

Query: 202 SKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRY 261
            KPVN GSLTI GLHL++L F KMS FTDKKE+Q+SATALGY+AH VSL+ASYL+VPLRY
Sbjct: 195 LKPVNQGSLTIQGLHLSMLSFRKMSFFTDKKEIQKSATALGYVAHAVSLVASYLQVPLRY 254

Query: 262 PLRLGGSHTYINDYAPSIEPT-SDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLN 320
           P+RLG SH+YI D APSIE T S+ S++  + TN K  EFPLFLEGQD TRAAYAVFLL+
Sbjct: 255 PVRLGASHSYIIDNAPSIELTSSEASTSTKVFTNAKHVEFPLFLEGQDTTRAAYAVFLLS 314

Query: 321 KGTFNLRNRIN 331
           K    L N I 
Sbjct: 315 KDLEQLLNFIG 325

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79324025|ref|NP_001031467.1| uncharacterized protein [Arabidopsis thaliana] gi|330253640|gb|AEC08734.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  315 bits (808), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 159/251 (63%), Positives = 190/251 (75%), Gaps = 5/251 (1%)

Query: 82  MRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRL 141
           MR+RLEAR+LL++K S+  KV ++D K +EE LS EVRSLLV GT LS+A+ +LQESN  
Sbjct: 1   MRQRLEARKLLVDKTSVACKVTEQDVKKKEENLSTEVRSLLVGGTTLSIAKSKLQESNCQ 60

Query: 142 LAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAA 201
           L GE GY HL+ +   LR RQQFM+SQVSF+YP+KI  GP Q+QELESFP G+R G    
Sbjct: 61  LEGESGYAHLKIVTNKLRKRQQFMVSQVSFIYPLKIEAGPSQDQELESFPGGSRLG---- 116

Query: 202 SKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRY 261
           +KP++ GS+ ILGL  ++ PFTKMS FTDKKEVQ+SATALGY+AH VSLIA YL VP+RY
Sbjct: 117 TKPLSQGSVRILGLPFSMAPFTKMSFFTDKKEVQKSATALGYVAHAVSLIAPYLRVPIRY 176

Query: 262 PLRLGGSHTYINDYAPSIEPT-SDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLN 320
           PL LGGS TYI DYAP IEP+ SD+S    LS N    EFPLFL+GQD TRAAYAVFLLN
Sbjct: 177 PLCLGGSKTYIRDYAPYIEPSPSDMSPITTLSQNINFVEFPLFLDGQDTTRAAYAVFLLN 236

Query: 321 KGTFNLRNRIN 331
           K    L N + 
Sbjct: 237 KNIEQLLNFVG 247

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	351
TAIR|locus:2046362	352	AT2G32760 "AT2G32760" [Arabido	0.877	0.875	0.527	3.4e-77
UNIPROTKB|F1NDB2	659	UVRAG "Uncharacterized protein	0.219	0.116	0.411	3.7e-08
UNIPROTKB|F1NAL8	679	UVRAG "Uncharacterized protein	0.219	0.113	0.411	4e-08
RGD|1589754	698	Uvrag "UV radiation resistance	0.219	0.110	0.411	9e-08
UNIPROTKB|F1PYG4	699	UVRAG "Uncharacterized protein	0.219	0.110	0.411	1.1e-07
UNIPROTKB|E9PR71	598	UVRAG "UV radiation resistance	0.219	0.128	0.411	1.2e-07
UNIPROTKB|Q9P2Y5	699	UVRAG "UV radiation resistance	0.219	0.110	0.411	1.8e-07
UNIPROTKB|F1N3U6	699	UVRAG "Uncharacterized protein	0.219	0.110	0.411	2.4e-07
UNIPROTKB|I3L6L5	537	UVRAG "Uncharacterized protein	0.219	0.143	0.377	3.5e-07
DICTYBASE|DDB_G0288175	824	DDB_G0288175 "UV radiation res	0.601	0.256	0.256	2.9e-06

TAIR|locus:2046362 AT2G32760 "AT2G32760" [Arabidopsis thaliana (taxid:3702)]

 Score = 777 (278.6 bits), Expect = 3.4e-77, P = 3.4e-77
 Identities = 165/313 (52%), Positives = 200/313 (63%)

Query:    22 DPENVKVIEWEDYDQEXXXXXXXXXXXXXXDDXXXXXXXXXXXXXXVKAESLKRSNXXXX 81
             D E+ K+IEWE++D E               +              V  ESL+R+N    
Sbjct:    17 DREDGKIIEWEEFDHELTRLWSLSSAMKLATERKQILQPKLESLIQVSTESLRRTNELEE 76

Query:    82 XXXXXXXXXXXXXKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRL 141
                          K S+  KV ++D K +EE LS EVRSLLV GT LS+A+ +LQESN  
Sbjct:    77 MRQRLEARKLLVDKTSVACKVTEQDVKKKEENLSTEVRSLLVGGTTLSIAKSKLQESNCQ 136

Query:   142 LAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGNRSGNSAA 201
             L GE GY HL+ +   LR RQQFM+SQVSF+YP+KI  GP Q+QELESFP G+R G    
Sbjct:   137 LEGESGYAHLKIVTNKLRKRQQFMVSQVSFIYPLKIEAGPSQDQELESFPGGSRLG---- 192

Query:   202 SKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRY 261
             +KP++ GS+ ILGL  ++ PFTKMS FTDKKEVQ+SATALGY+AH VSLIA YL VP+RY
Sbjct:   193 TKPLSQGSVRILGLPFSMAPFTKMSFFTDKKEVQKSATALGYVAHAVSLIAPYLRVPIRY 252

Query:   262 PLRLGGSHTYINDYAPSIEPT-SDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLN 320
             PL LGGS TYI DYAP IEP+ SD+S    LS N    EFPLFL+GQD TRAAYAVFLLN
Sbjct:   253 PLCLGGSKTYIRDYAPYIEPSPSDMSPITTLSQNINFVEFPLFLDGQDTTRAAYAVFLLN 312

Query:   321 KGTFNLRNRINRS 333
             K    L N +  +
Sbjct:   313 KNIEQLLNFVGEN 325

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1NDB2 UVRAG "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 142 (55.0 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
 Identities = 37/90 (41%), Positives = 49/90 (54%)

Query:   238 ATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKP 297
             A ALGY AH+VS+I+ +L+VPLRYP+   GS + I D             NI      K 
Sbjct:   322 AVALGYTAHLVSMISYFLQVPLRYPIIHKGSRSTIKD-------------NINDKLTEKE 368

Query:   298 AEFPLFLEGQDATRAAYAVFLLNKGTFNLR 327
              EFPL+ +G +  +  Y V+LLNK    LR
Sbjct:   369 REFPLYPKGGEKLQFEYGVYLLNKNIAQLR 398

GO:0010508 "positive regulation of autophagy" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

UNIPROTKB|F1NAL8 UVRAG "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 142 (55.0 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
 Identities = 37/90 (41%), Positives = 49/90 (54%)

Query:   238 ATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKP 297
             A ALGY AH+VS+I+ +L+VPLRYP+   GS + I D             NI      K 
Sbjct:   342 AVALGYTAHLVSMISYFLQVPLRYPIIHKGSRSTIKD-------------NINDKLTEKE 388

Query:   298 AEFPLFLEGQDATRAAYAVFLLNKGTFNLR 327
              EFPL+ +G +  +  Y V+LLNK    LR
Sbjct:   389 REFPLYPKGGEKLQFEYGVYLLNKNIAQLR 418

GO:0010508 "positive regulation of autophagy" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

RGD|1589754 Uvrag "UV radiation resistance associated gene" [Rattus norvegicus (taxid:10116)]

 Score = 141 (54.7 bits), Expect = 9.0e-08, Sum P(2) = 9.0e-08
 Identities = 37/90 (41%), Positives = 49/90 (54%)

Query:   238 ATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKP 297
             A ALGY AH+VS+I+ +L+VPLRYP+   GS + I D             NI      K 
Sbjct:   360 AVALGYTAHLVSMISFFLQVPLRYPIIHKGSRSTIKD-------------NINDKLTEKE 406

Query:   298 AEFPLFLEGQDATRAAYAVFLLNKGTFNLR 327
              EFPL+ +G +  +  Y V+LLNK    LR
Sbjct:   407 REFPLYPKGGEKLQFDYGVYLLNKNIAQLR 436

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0010508 "positive regulation of autophagy" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

UNIPROTKB|F1PYG4 UVRAG "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 141 (54.7 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
 Identities = 37/90 (41%), Positives = 49/90 (54%)

Query:   238 ATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKP 297
             A ALGY AH+VS+I+ +L+VPLRYP+   GS + I D             NI      K 
Sbjct:   361 AVALGYTAHLVSMISFFLQVPLRYPIIHKGSRSTIKD-------------NINDKLTEKE 407

Query:   298 AEFPLFLEGQDATRAAYAVFLLNKGTFNLR 327
              EFPL+ +G +  +  Y V+LLNK    LR
Sbjct:   408 REFPLYPKGGEKLQFDYGVYLLNKNIAQLR 437

GO:0043234 "protein complex" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0010508 "positive regulation of autophagy" evidence=IEA

UNIPROTKB|E9PR71 UVRAG "UV radiation resistance-associated gene protein" [Homo sapiens (taxid:9606)]

 Score = 141 (54.7 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
 Identities = 37/90 (41%), Positives = 49/90 (54%)

Query:   238 ATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKP 297
             A ALGY AH+VS+I+ +L+VPLRYP+   GS + I D             NI      K 
Sbjct:   260 AVALGYTAHLVSMISFFLQVPLRYPIIHKGSRSTIKD-------------NINDKLTEKE 306

Query:   298 AEFPLFLEGQDATRAAYAVFLLNKGTFNLR 327
              EFPL+ +G +  +  Y V+LLNK    LR
Sbjct:   307 REFPLYPKGGEKLQFDYGVYLLNKNIAQLR 336

GO:0010508 "positive regulation of autophagy" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

UNIPROTKB|Q9P2Y5 UVRAG "UV radiation resistance-associated gene protein" [Homo sapiens (taxid:9606)]

 Score = 141 (54.7 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
 Identities = 37/90 (41%), Positives = 49/90 (54%)

Query:   238 ATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKP 297
             A ALGY AH+VS+I+ +L+VPLRYP+   GS + I D             NI      K 
Sbjct:   361 AVALGYTAHLVSMISFFLQVPLRYPIIHKGSRSTIKD-------------NINDKLTEKE 407

Query:   298 AEFPLFLEGQDATRAAYAVFLLNKGTFNLR 327
              EFPL+ +G +  +  Y V+LLNK    LR
Sbjct:   408 REFPLYPKGGEKLQFDYGVYLLNKNIAQLR 437

GO:0010508 "positive regulation of autophagy" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005770 "late endosome" evidence=IDA

GO:0005769 "early endosome" evidence=IDA

GO:0005764 "lysosome" evidence=IDA

GO:0006281 "DNA repair" evidence=TAS

GO:0005737 "cytoplasm" evidence=TAS

UNIPROTKB|F1N3U6 UVRAG "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 140 (54.3 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
 Identities = 37/90 (41%), Positives = 49/90 (54%)

Query:   238 ATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKP 297
             A ALGY AH+VS+I+ +L+VPLRYP+   GS + I D             NI      K 
Sbjct:   361 AVALGYTAHLVSMISFFLQVPLRYPVIHKGSRSTIKD-------------NINDKLTEKE 407

Query:   298 AEFPLFLEGQDATRAAYAVFLLNKGTFNLR 327
              EFPL+ +G +  +  Y V+LLNK    LR
Sbjct:   408 REFPLYPKGGEKLQFDYGVYLLNKNIAQLR 437

GO:0043234 "protein complex" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0010508 "positive regulation of autophagy" evidence=IEA

UNIPROTKB|I3L6L5 UVRAG "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 135 (52.6 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
 Identities = 34/90 (37%), Positives = 49/90 (54%)

Query:   238 ATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLSSNIALSTNTKP 297
             A ALGY AH+VS+++ +L+VPLRYP+   GS + I D             NI      K 
Sbjct:   199 AVALGYTAHLVSMVSFFLQVPLRYPIIHKGSRSTIKD-------------NINDKLTEKE 245

Query:   298 AEFPLFLEGQDATRAAYAVFLLNKGTFNLR 327
              EFPL+ +G +  +  Y V+LLNK    ++
Sbjct:   246 REFPLYPKGGEKLQFDYGVYLLNKNIAQIK 275

GO:0010508 "positive regulation of autophagy" evidence=IEA

DICTYBASE|DDB_G0288175 DDB_G0288175 "UV radiation resistance-associated gene protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 139 (54.0 bits), Expect = 2.9e-06, P = 2.9e-06
 Identities = 62/242 (25%), Positives = 112/242 (46%)

Query:    97 SMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKR-LQESNRLLAGEKGYGHLQK-- 153
             S R   E ED  ++E     + R L      +++ R+  L + N+L   +  + HL++  
Sbjct:   564 SKRLSKEIEDRLDRESEYLEKQRQLENQRNRINLLREEALTQQNQLQGDQDKFNHLKRGL 623

Query:   154 LQKMLRMRQQFMISQVSFLYPVKILVGPKQEQEL-----ESFPSG--NRSGNSAASKPVN 206
             + + + +    +    SF   +K     K + +L      S+     N      +  P+ 
Sbjct:   624 VPRSVALTNAGIQFYKSFRQLIKSTEVLKMDTQLLRNLKVSWEKKKWNLITQIRSIYPIG 683

Query:   207 PGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLG 266
              G+  +L ++   LP +  + F D++++   ATALGY+ H++ L + YL++PLRYP+   
Sbjct:   684 QGN-KMLTINSLPLPNSDYNGF-DEEQI---ATALGYVCHILHLASKYLDIPLRYPMTPM 738

Query:   267 GSHTYINDYAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNKGTFNL 326
             GS ++I D              I+  +++K   FPL+ +G +     YAVF LNK    L
Sbjct:   739 GSRSFIKD-------------EISHHSSSK---FPLYSKGVEKKIFDYAVFFLNKNLEPL 782

Query:   327 RN 328
              N
Sbjct:   783 FN 784

GO:0010508 "positive regulation of autophagy" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	351
PF10186	302	Atg14: UV radiation resistance protein and autopha	100.0
KOG2896	377	consensus UV radiation resistance associated prote	100.0
KOG4398	359	consensus Predicted coiled-coil protein [General f	99.35
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	99.06
KOG2751	447	consensus Beclin-like protein [Signal transduction	98.14
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	92.69
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	92.47
PF10186	302	Atg14: UV radiation resistance protein and autopha	91.69
PRK11637	428	AmiB activator; Provisional	91.36
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	91.21
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	90.11
PRK10869	553	recombination and repair protein; Provisional	89.43
PRK09039	343	hypothetical protein; Validated	88.7
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	88.66
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	88.0
PRK12704	520	phosphodiesterase; Provisional	87.34
COG0497	557	RecN ATPase involved in DNA repair [DNA replicatio	86.54
PLN03094	370	Substrate binding subunit of ER-derived-lipid tran	86.07
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	85.85
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	85.72
PF10267	395	Tmemb_cc2: Predicted transmembrane and coiled-coil	85.62
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	85.14
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	84.7
PF06248	593	Zw10: Centromere/kinetochore Zw10; InterPro: IPR00	84.23
COG4942	420	Membrane-bound metallopeptidase [Cell division and	84.12
PRK09343	121	prefoldin subunit beta; Provisional	83.78
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	83.75
PF10392	132	COG5: Golgi transport complex subunit 5; InterPro:	83.71
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	82.82
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	81.96
PF04100	383	Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007	81.89
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	81.39
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	80.92
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	80.92

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=100.00  E-value=9.2e-41  Score=318.07  Aligned_cols=261  Identities=29%  Similarity=0.404  Sum_probs=197.7

Q ss_pred             HHhcHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 018759           40 RLWSLSSALSQADDKKQTLQQKLQSLIQ-----VKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERL  114 (351)
Q Consensus        40 rL~~L~~~iqda~~~~~~L~~qI~~lLe-----~~~~~l~~~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~reeL  114 (351)
                      +|+++...|+++.+.++.|+.+|+.+|+     ..........++.+++.+++..+..++....+.+..++.+.+.++.|
T Consensus        21 ~L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l  100 (302)
T PF10186_consen   21 RLLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESL  100 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999     66666677888888888888888888887777777777777777777


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHhHHHhhcccccchHHHHHHHHHHHHHHHHHHhhhhccceeeCCCCcccccccCCCCC
Q 018759          115 SMEVRSLLVAGTALSVARKRLQESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQVSFLYPVKILVGPKQEQELESFPSGN  194 (351)
Q Consensus       115 ~~~ir~l~~~~~~l~~a~~~L~ea~~~L~~e~~~~~L~~l~~~L~~rR~~lv~qL~~IyPI~~~~~~~~~~~~~~~~~~~  194 (351)
                      ..+...+.............+.+....+..  .+..+..++.++..+|..++.+|..||||+++..++.           
T Consensus       101 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~l~~~l~~~r~~l~~~l~~ifpI~~~~~~~~-----------  167 (302)
T PF10186_consen  101 EQRRSRLSASQDLVESRQEQLEELQNELEE--RKQRLSQLQSQLARRRRQLIQELSEIFPIEQVSSPRR-----------  167 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeccccc-----------
Confidence            777766662222222222223333222222  2455677999999999999999999999998721100           


Q ss_pred             CCCCCCCCCCCCCCceEEeceecCCCcccccCCCCChhHHHHHHhHhhHHHHHHHHHHHHcCCCCCcceeecCCcceecc
Q 018759          195 RSGNSAASKPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYIND  274 (351)
Q Consensus       195 ~~g~~~~~~~~~~~~~tI~Gl~LP~~~~~~~~~f~~~~~~e~isaALGyvAhlV~Lls~YL~VpLpYPi~~~gSrSyI~D  274 (351)
                       .      .+..+..|+|+|++||+..     +|...+ .+.++||||||||+|.|||+||||||||||.+.||+|+|.|
T Consensus       168 -~------~~~~~~~~~I~~~~lp~~~-----~~~~~~-~~~isaALgyvahlv~lls~yL~v~Lpy~i~~~gs~s~i~d  234 (302)
T PF10186_consen  168 -P------SDSSSSEYTICGLPLPNSR-----DFNSLP-DEEISAALGYVAHLVSLLSRYLGVPLPYPITPSGSRSTIID  234 (302)
T ss_pred             -C------CCCCCCCeeecCcccCCCc-----ccccCC-HHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccCccccchhh
Confidence             0      0001469999999999963     333333 35899999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcccccccccCCCCCcccCCccCCCchhhHHHHHHHHHHHHHHHHHhcCCCCccccccc
Q 018759          275 YAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNKGTFNLRNRINRSWIDYIVRC  341 (351)
Q Consensus       275 ~i~~~~~ss~~~~~~~~~~~~~~r~fPLf~~~~~~~rF~yaV~LLNknI~qL~~~~Gl~~~D~~~~~  341 (351)
                       .+.              ....+..++.+.++.++++|+||||||||||+|||+++|+.+.++.+++
T Consensus       235 -~~~--------------~~~~~~~~~~~~~~~~~~~f~~~v~lLn~nI~~L~~~q~~~~~~l~~~~  286 (302)
T PF10186_consen  235 -FSP--------------SIDRPLPSLSYESGVDRQRFEYAVFLLNKNIAQLCFSQGIDVPLLDPRD  286 (302)
T ss_pred             -ccc--------------ccCCcchhhhccccccHHHHHHHHHHHHHHHHHHHHHcCCCCCcCCchh
Confidence             321              1223444455555778999999999999999999999999999555444

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>KOG2896 consensus UV radiation resistance associated protein [General function prediction only]

Probab=100.00  E-value=1e-31  Score=260.51  Aligned_cols=114  Identities=43%  Similarity=0.701  Sum_probs=101.1

Q ss_pred             CCceEEeceecCCCcccccCCCCChhHHHHHHhHhhHHHHHHHHHHHHcCCCCCcceeecCCcceeccCCCCCCCCCccc
Q 018759          207 PGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYINDYAPSIEPTSDLS  286 (351)
Q Consensus       207 ~~~~tI~Gl~LP~~~~~~~~~f~~~~~~e~isaALGyvAhlV~Lls~YL~VpLpYPi~~~gSrSyI~D~i~~~~~ss~~~  286 (351)
                      ...|||||++||+-.    +++ .+++ ..+||||||+||||++||.||.+||||||.+.||+|||.|+++...+     
T Consensus       208 ~~v~tIrGl~lp~~~----d~~-~~s~-~~~aaALGylaHLv~~Is~~L~~pLRYPIl~~~Sks~I~D~i~~~~~-----  276 (377)
T KOG2896|consen  208 HLVFTIRGLKLPFIE----DKQ-NKSE-QETAAALGYLAHLVSMISKYLEVPLRYPILLAGSKSYIRDYIPDIET-----  276 (377)
T ss_pred             hhhhhhhcccCCchh----hhh-ccch-HHHHHHHHHHHHHHHHHHHHhccccccccccccccceecccCCcccc-----
Confidence            357999999999953    222 3444 57999999999999999999999999999999999999999987532     


Q ss_pred             ccccccCCCCCcccCCccCCCchhhHHHHHHHHHHHHHHHHHhcCCCCcccccc
Q 018759          287 SNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNKGTFNLRNRINRSWIDYIVR  340 (351)
Q Consensus       287 ~~~~~~~~~~~r~fPLf~~~~~~~rF~yaV~LLNknI~qL~~~~Gl~~~D~~~~  340 (351)
                               ..|+||||.+++++.+|+||+|||||||+|||+.+|++..|++.|
T Consensus       277 ---------ttr~fply~k~~~~e~f~~glylL~qNiaqlr~~~gl~t~~ld~t  321 (377)
T KOG2896|consen  277 ---------TTREFPLYTKSQEIEQFEYGLYLLNQNIAQLRYDCGLPTPDLDQT  321 (377)
T ss_pred             ---------ccccccCccccchHHHHHHHHHHHhccHHHHHHHcCCCCccHHHh
Confidence                     278999999999999999999999999999999999999988765

>KOG4398 consensus Predicted coiled-coil protein [General function prediction only]

Probab=99.35  E-value=1.8e-11  Score=115.94  Aligned_cols=102  Identities=19%  Similarity=0.043  Sum_probs=80.2

Q ss_pred             CceEEece--ecCCCcc-c------------ccCCCCChhHHHHHHhHhhHHHHHHHHHHHHcCCCCCcceeecCCccee
Q 018759          208 GSLTILGL--HLTILPF-T------------KMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYPLRLGGSHTYI  272 (351)
Q Consensus       208 ~~~tI~Gl--~LP~~~~-~------------~~~~f~~~~~~e~isaALGyvAhlV~Lls~YL~VpLpYPi~~~gSrSyI  272 (351)
                      ..|.|.|.  .||+.+. .            .++.-....+...|.+||.|++|||+|||+||+|+||..|..+      
T Consensus       145 i~~~i~gp~~slp~ngdY~ay~~w~~~~k~tsn~~~~~~~~ay~i~aAltyt~QLv~lLS~ilnvrlP~kl~~~------  218 (359)
T KOG4398|consen  145 INFIIPGPTQSLPINGDYIAYKLWAKLAKQTSNGTISLPLDAYPIFAALTYTLQLVHLLSVILNVRLPEKLSHH------  218 (359)
T ss_pred             eeEEecCCcccccCCCchHHHHHHHhhhhhccCCCcCCCccccchHHHHHHHHHHHHHHHHHhccCCchhhcch------
Confidence            58999997  8888651 1            0111111234557999999999999999999999999999887      


Q ss_pred             ccCCCCCCCCCcccccccccCCCCCcccCCccCCCchhhHHHHHHHHHHHHHHHHHhcCCCCccccccccc
Q 018759          273 NDYAPSIEPTSDLSSNIALSTNTKPAEFPLFLEGQDATRAAYAVFLLNKGTFNLRNRINRSWIDYIVRCTC  343 (351)
Q Consensus       273 ~D~i~~~~~ss~~~~~~~~~~~~~~r~fPLf~~~~~~~rF~yaV~LLNknI~qL~~~~Gl~~~D~~~~~~~  343 (351)
                       |++-..                           =.+..|..+|.-||-||.+||..||+..--+.++||-
T Consensus       219 -dfC~e~---------------------------ltke~f~R~~s~Ln~nIiYLc~~q~v~l~~L~~~htl  261 (359)
T KOG4398|consen  219 -DFCIER---------------------------LTKESFNRDWSTLNDNIIYLCIFQGVSLTKLKYTHTL  261 (359)
T ss_pred             -hHHHHH---------------------------hhHHHHHHHHHHHhhhHHHHHHHhccchhhccccchH
Confidence             776421                           1468999999999999999999999999888888763

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=99.06  E-value=3e-08  Score=97.31  Aligned_cols=99  Identities=24%  Similarity=0.287  Sum_probs=66.9

Q ss_pred             ceEEeceecCCCcccccCCCCChhHHHHHHhHhhHHHHHHHHHHHHcCCCC-CcceeecCCcceeccCCCCCCCCCcccc
Q 018759          209 SLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPL-RYPLRLGGSHTYINDYAPSIEPTSDLSS  287 (351)
Q Consensus       209 ~~tI~Gl~LP~~~~~~~~~f~~~~~~e~isaALGyvAhlV~Lls~YL~VpL-pYPi~~~gSrSyI~D~i~~~~~ss~~~~  287 (351)
                      .=||.|+.|.-.+....       +-..|+||+|++|.|+..||..|++.+ .|.|.|+||.|+|.+....         
T Consensus       150 fGTINGlRLGrl~~~~V-------~W~EINAA~Gq~~LLL~~la~~l~~~f~~y~l~P~Gs~S~I~~~~~~---------  213 (314)
T PF04111_consen  150 FGTINGLRLGRLPNVPV-------EWNEINAAWGQTALLLQTLAKKLNFKFQRYRLVPMGSFSKIEKLEGD---------  213 (314)
T ss_dssp             EEEETTEEE--BTTB----------HHHHHHHHHHHHHHHHHHHHHCT---SSEEEE--GGG-EEEECS-----------
T ss_pred             eeeECCeeeccCCCCCC-------ChHHHHHHHHHHHHHHHHHHHHhCCCcccceeEecCCCCEEEEeccC---------
Confidence            33899999876542211       123699999999999999999999986 5999999999999988632         


Q ss_pred             cccccCCCCCcccCCccCCC-------chhhHHHHHHHHHHHHHHHHHhc
Q 018759          288 NIALSTNTKPAEFPLFLEGQ-------DATRAAYAVFLLNKGTFNLRNRI  330 (351)
Q Consensus       288 ~~~~~~~~~~r~fPLf~~~~-------~~~rF~yaV~LLNknI~qL~~~~  330 (351)
                             .....||||..+.       ...+|+-|+--+=.-+.|++...
T Consensus       214 -------~~~~~~~ly~~~~~~~~~~f~~~~Fd~am~~~L~~~~q~~~~~  256 (314)
T PF04111_consen  214 -------KDKTTYPLYSSGSFSLGRLFSSRKFDKAMVAFLDCLQQLAEFV  256 (314)
T ss_dssp             --------TCEEEESS--SS----GGG--SHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------CCCeEEecccCCCchhhhhhhhcchHHHHHHHHHHHHHHHHHH
Confidence                   1357899998874       23599999988888888887654

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]

Probab=98.14  E-value=0.0005  Score=69.46  Aligned_cols=94  Identities=24%  Similarity=0.305  Sum_probs=69.6

Q ss_pred             EEeceecCCCcccccCCCCChhHHHHHHhHhhHHHHHHHHHHHHcCCCCC-cceeecCCcceeccCCCCCCCCCcccccc
Q 018759          211 TILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLR-YPLRLGGSHTYINDYAPSIEPTSDLSSNI  289 (351)
Q Consensus       211 tI~Gl~LP~~~~~~~~~f~~~~~~e~isaALGyvAhlV~Lls~YL~VpLp-YPi~~~gSrSyI~D~i~~~~~ss~~~~~~  289 (351)
                      ||.|+.|.-.+-...+       -+.|+||+|=++.+++.++.=+|+.+- |.++|+||+|||.-.--            
T Consensus       285 tIN~FRLG~lp~~pVe-------w~EINAA~GQ~vLLL~~l~~kig~~~~~y~lvp~GshSyI~~~~~------------  345 (447)
T KOG2751|consen  285 TINNFRLGRLPSVPVE-------WDEINAAWGQTVLLLHTLANKIGLNFVRYRLVPMGSHSYIKKRMV------------  345 (447)
T ss_pred             ccccceeccccCCCcC-------HHHHHHHhhhHHHHHHHHHHhcCcccceeeeecccchhHHHHhcc------------
Confidence            5777777554321111       135999999999999999999999764 99999999999986632            


Q ss_pred             cccCCCCCcccCCccCCCc----hhhHHHHHHHHHHHHHHHHH
Q 018759          290 ALSTNTKPAEFPLFLEGQD----ATRAAYAVFLLNKGTFNLRN  328 (351)
Q Consensus       290 ~~~~~~~~r~fPLf~~~~~----~~rF~yaV~LLNknI~qL~~  328 (351)
                           ..++++|||.-|+-    .++|+-|+-.-=--+.|+..
T Consensus       346 -----~~~~el~l~~sgg~~~f~~tkfD~amvafLd~L~qf~~  383 (447)
T KOG2751|consen  346 -----NLPYELPLFQSGGLKFFWSTKFDKAMVAFLDCLKQFAD  383 (447)
T ss_pred             -----CCCccchhhcCCCceeeeccccCHHHHHHHHHHHHHHH
Confidence                 25789999998863    35888887665555555543

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=92.69  E-value=11  Score=37.18  Aligned_cols=122  Identities=20%  Similarity=0.296  Sum_probs=56.9

Q ss_pred             hcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 018759           42 WSLSSALSQADDKKQTLQQKLQSLIQVKAE-SLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRS  120 (351)
Q Consensus        42 ~~L~~~iqda~~~~~~L~~qI~~lLe~~~~-~l~~~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~reeL~~~ir~  120 (351)
                      ..++..+.++......|+.++..+=+...+ ......++..++.+|......++.    .++...+++.+.+++...+..
T Consensus       173 ~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~----~k~~l~el~~el~~l~~~i~~  248 (325)
T PF08317_consen  173 EQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEA----KKKELAELQEELEELEEKIEE  248 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence            334444555555555666665544443222 122334555555555443333332    444445555555555555555


Q ss_pred             HHHHhhHHHHHHHHHHHhHHHhhcccccc--hHHHHHHHHHHHHHHHHHHhhhhccceee
Q 018759          121 LLVAGTALSVARKRLQESNRLLAGEKGYG--HLQKLQKMLRMRQQFMISQVSFLYPVKIL  178 (351)
Q Consensus       121 l~~~~~~l~~a~~~L~ea~~~L~~e~~~~--~L~~l~~~L~~rR~~lv~qL~~IyPI~~~  178 (351)
                      +....   .+....+.++...+..-++..  .+..++        .-+..|..+.++..+
T Consensus       249 ~~~~k---~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk--------~~~~~Le~~~gw~~~  297 (325)
T PF08317_consen  249 LEEQK---QELLAEIAEAEKIREECRGWTRSEVKRLK--------AKVDALEKLTGWKIV  297 (325)
T ss_pred             HHHHH---HHHHHHHHHHHHHHHHhcCCCHHHHHHHH--------HHHHHHHHHHCcEEE
Confidence            44444   333334444444443222221  122332        235566667777765

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=92.47  E-value=12  Score=41.04  Aligned_cols=31  Identities=35%  Similarity=0.499  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018759           45 SSALSQADDKKQTLQQKLQSLIQVKAESLKR   75 (351)
Q Consensus        45 ~~~iqda~~~~~~L~~qI~~lLe~~~~~l~~   75 (351)
                      ..+|++++.+.+.|+.++..+...++...+.
T Consensus       459 k~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~  489 (697)
T PF09726_consen  459 KSELSQLRQENEQLQNKLQNLVQARQQDKQS  489 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3457778888888888888887777654443

; GO: 0016021 integral to membrane

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=91.69  E-value=12  Score=35.39  Aligned_cols=67  Identities=25%  Similarity=0.306  Sum_probs=40.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHh
Q 018759           76 SNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLL  142 (351)
Q Consensus        76 ~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~reeL~~~ir~l~~~~~~l~~a~~~L~ea~~~L  142 (351)
                      ...+...+.+++..+..++....+...+++.+..++..|.............+......+.+.+..+
T Consensus        69 ~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  135 (302)
T PF10186_consen   69 RERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRL  135 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666666666677777777777778888888888877333333333344444444555444443

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PRK11637 AmiB activator; Provisional

Probab=91.36  E-value=18  Score=36.84  Aligned_cols=41  Identities=15%  Similarity=0.215  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 018759           79 LEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVR  119 (351)
Q Consensus        79 l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~reeL~~~ir  119 (351)
                      +.+.+.+++.....++.....+..+.+++..+++.|..+++
T Consensus        91 i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlr  131 (428)
T PRK11637         91 LRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLD  131 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444455555555555555555555555555554

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=91.21  E-value=8.4  Score=36.50  Aligned_cols=74  Identities=12%  Similarity=0.131  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018759           45 SSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVA  124 (351)
Q Consensus        45 ~~~iqda~~~~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~reeL~~~ir~l~~~  124 (351)
                      .+..++........+.+|+.+-+........   +..+..+++    .++.+..+.++.....++..++|..++..+...
T Consensus        27 ~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e---~~~l~~e~e----~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~   99 (251)
T PF11932_consen   27 QQVQQQWVQAAQQSQKRIDQWDDEKQELLAE---YRQLEREIE----NLEVYNEQLERQVASQEQELASLEQQIEQIEET   99 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555666666666666655433332   222222222    222233334444445555555555555544444


Q ss_pred             h
Q 018759          125 G  125 (351)
Q Consensus       125 ~  125 (351)
                      .
T Consensus       100 ~  100 (251)
T PF11932_consen  100 R  100 (251)
T ss_pred             H
Confidence            3

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=90.11  E-value=10  Score=36.25  Aligned_cols=8  Identities=13%  Similarity=0.052  Sum_probs=4.6

Q ss_pred             eceecCCC
Q 018759          213 LGLHLTIL  220 (351)
Q Consensus       213 ~Gl~LP~~  220 (351)
                      |++.||..
T Consensus       203 C~m~l~~~  210 (239)
T COG1579         203 CHMKLPSQ  210 (239)
T ss_pred             CeeeecHH
Confidence            55666653

>PRK10869 recombination and repair protein; Provisional

Probab=89.43  E-value=10  Score=40.32  Aligned_cols=25  Identities=24%  Similarity=0.170  Sum_probs=13.3

Q ss_pred             CCCcceeehhhhHHHHHHHhcHHHH
Q 018759           23 PENVKVIEWEDYDQELARLWSLSSA   47 (351)
Q Consensus        23 ~~~~~~~~~~~~~~~L~rL~~L~~~   47 (351)
                      .-+++.-+|+++++...+|.|-..-
T Consensus       199 ~~~l~~gE~eeL~~e~~~L~n~e~i  223 (553)
T PRK10869        199 EFAPQPGEFEQIDEEYKRLANSGQL  223 (553)
T ss_pred             hCCCCCCcHHHHHHHHHHHHHHHHH
Confidence            3344455566666665555554443

>PRK09039 hypothetical protein; Validated

Probab=88.70  E-value=28  Score=34.85  Aligned_cols=17  Identities=6%  Similarity=0.034  Sum_probs=8.3

Q ss_pred             HHHHHHHHHHHHhhhhc
Q 018759          157 MLRMRQQFMISQVSFLY  173 (351)
Q Consensus       157 ~L~~rR~~lv~qL~~Iy  173 (351)
                      .|...|......|..+.
T Consensus       191 ~l~~~~~~~~~~l~~~~  207 (343)
T PRK09039        191 ELNRYRSEFFGRLREIL  207 (343)
T ss_pred             HHHHhHHHHHHHHHHHh
Confidence            44555555555554443

>TIGR00634 recN DNA repair protein RecN

Probab=88.66  E-value=14  Score=39.30  Aligned_cols=92  Identities=15%  Similarity=0.233  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 018759           44 LSSALSQADDKKQTLQQKLQSLIQVKAESLKR----SNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVR  119 (351)
Q Consensus        44 L~~~iqda~~~~~~L~~qI~~lLe~~~~~l~~----~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~reeL~~~ir  119 (351)
                      ++..+++.....+....+++++...-..+...    -.+++++++|+........++-    .-.+++.+.+++++.++.
T Consensus       264 ~d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg----~s~e~l~~~~~~l~~eL~  339 (563)
T TIGR00634       264 IDGSLRELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKRLKRKYG----ASVEEVLEYAEKIKEELD  339 (563)
T ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHHHH
Confidence            45555555555555555555444443333222    3456667777765555444433    344666677777777776


Q ss_pred             HHHHHhhHHHHHHHHHHHhH
Q 018759          120 SLLVAGTALSVARKRLQESN  139 (351)
Q Consensus       120 ~l~~~~~~l~~a~~~L~ea~  139 (351)
                      .+......+.....++.++.
T Consensus       340 ~l~~~~~~le~L~~el~~l~  359 (563)
T TIGR00634       340 QLDDSDESLEALEEEVDKLE  359 (563)
T ss_pred             HHhCCHHHHHHHHHHHHHHH
Confidence            65555544444444444433

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=88.00  E-value=21  Score=38.61  Aligned_cols=33  Identities=18%  Similarity=0.171  Sum_probs=16.4

Q ss_pred             HhHHHhhcccccchHHHHHHHHHHHHHHHHHHh
Q 018759          137 ESNRLLAGEKGYGHLQKLQKMLRMRQQFMISQV  169 (351)
Q Consensus       137 ea~~~L~~e~~~~~L~~l~~~L~~rR~~lv~qL  169 (351)
                      ..+..+..|+...+-......|..+-..+|..+
T Consensus       304 ~~~~q~~~e~~~~~~~~~~~~l~~~~~~i~~~~  336 (650)
T TIGR03185       304 STKAQLQKEEQSQQNQLTQEELEERDKELLESL  336 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444322222335555666666777655

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PRK12704 phosphodiesterase; Provisional

Probab=87.34  E-value=43  Score=35.49  Aligned_cols=12  Identities=17%  Similarity=0.141  Sum_probs=6.8

Q ss_pred             hhHHHHHHHHHH
Q 018759          310 TRAAYAVFLLNK  321 (351)
Q Consensus       310 ~rF~yaV~LLNk  321 (351)
                      .....|..+|.+
T Consensus       381 ~H~~iGa~il~~  392 (520)
T PRK12704        381 SHVEIGAELAKK  392 (520)
T ss_pred             CHHHHHHHHHHH
Confidence            355566666654

>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=86.54  E-value=19  Score=38.48  Aligned_cols=79  Identities=24%  Similarity=0.260  Sum_probs=48.6

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 018759           43 SLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLL  122 (351)
Q Consensus        43 ~L~~~iqda~~~~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~reeL~~~ir~l~  122 (351)
                      .+.+.|.+|.........+|+.+++... +  .-+++++.++|+...+....+|-...    +++-...++++.++..|.
T Consensus       266 ~~~~~l~ea~~~l~ea~~el~~~~~~le-~--Dp~~L~~ve~Rl~~L~~l~RKY~~~~----~~l~~~~~~~~~el~~L~  338 (557)
T COG0497         266 ELAELLEEALYELEEASEELRAYLDELE-F--DPNRLEEVEERLFALKSLARKYGVTI----EDLLEYLDKIKEELAQLD  338 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCC-C--CHHHHHHHHHHHHHHHHHHHHhCCCH----HHHHHHHHHHHHHHHHhh
Confidence            3445566677777777777777776642 1  23568888888887777776655555    455555566666665554


Q ss_pred             HHhhHH
Q 018759          123 VAGTAL  128 (351)
Q Consensus       123 ~~~~~l  128 (351)
                      ..-..+
T Consensus       339 ~~~~~~  344 (557)
T COG0497         339 NSEESL  344 (557)
T ss_pred             hhhhHH
Confidence            444333

>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional

Probab=86.07  E-value=29  Score=35.32  Aligned_cols=16  Identities=13%  Similarity=0.046  Sum_probs=13.8

Q ss_pred             eeehhhhHHHHHHHhc
Q 018759           28 VIEWEDYDQELARLWS   43 (351)
Q Consensus        28 ~~~~~~~~~~L~rL~~   43 (351)
                      -++|+++-.++.||.+
T Consensus       226 ~vsld~L~~~ltrL~~  241 (370)
T PLN03094        226 GVSLDELVGICTRLAR  241 (370)
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            3889999999999876

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=85.85  E-value=48  Score=35.79  Aligned_cols=36  Identities=17%  Similarity=0.169  Sum_probs=17.6

Q ss_pred             hhHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018759           33 DYDQELARLW-SLSSALSQADDKKQTLQQKLQSLIQV   68 (351)
Q Consensus        33 ~~~~~L~rL~-~L~~~iqda~~~~~~L~~qI~~lLe~   68 (351)
                      .+.+.+..+. +....+.+...+...++.+|+.+=+.
T Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~  413 (650)
T TIGR03185       377 QLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKK  413 (650)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3443333333 23444555555566666666554443

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=85.72  E-value=52  Score=34.84  Aligned_cols=10  Identities=10%  Similarity=0.012  Sum_probs=4.9

Q ss_pred             hHHHHHHHHH
Q 018759          311 RAAYAVFLLN  320 (351)
Q Consensus       311 rF~yaV~LLN  320 (351)
                      ...+|..+|.
T Consensus       376 H~~~Ga~ll~  385 (514)
T TIGR03319       376 HVEIGAELAK  385 (514)
T ss_pred             HHHHHHHHHH
Confidence            4445555553

>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans

Probab=85.62  E-value=11  Score=38.70  Aligned_cols=24  Identities=13%  Similarity=0.270  Sum_probs=11.6

Q ss_pred             HHhHhhHHHHHHHHHHHHcCCCCC
Q 018759          237 SATALGYIAHVVSLIASYLEVPLR  260 (351)
Q Consensus       237 isaALGyvAhlV~Lls~YL~VpLp  260 (351)
                      |+..|..++-++.++|..+++|+|
T Consensus       344 inllL~l~~vlLv~vSt~~~~~~P  367 (395)
T PF10267_consen  344 INLLLTLLTVLLVFVSTVANCPLP  367 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCcH
Confidence            344444445555555555554443

Its function is unknown.

>TIGR01069 mutS2 MutS2 family protein

Probab=85.14  E-value=33  Score=38.08  Aligned_cols=75  Identities=24%  Similarity=0.283  Sum_probs=41.4

Q ss_pred             HHHHHHHhcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 018759           35 DQELARLWSLSSA-LSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEE  112 (351)
Q Consensus        35 ~~~L~rL~~L~~~-iqda~~~~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~re  112 (351)
                      =-.+++...|... |..|..-......+++.+|+...+.   ..++++..+.++..+..+++...+.+...++++++++
T Consensus       485 a~~iA~~~Glp~~ii~~A~~~~~~~~~~~~~li~~L~~~---~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~  560 (771)
T TIGR01069       485 AFEIAQRYGIPHFIIEQAKTFYGEFKEEINVLIEKLSAL---EKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERER  560 (771)
T ss_pred             HHHHHHHhCcCHHHHHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3346777777554 6788888888888899888875432   2234444444443334433333333333333333333

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.70  E-value=41  Score=32.73  Aligned_cols=82  Identities=21%  Similarity=0.342  Sum_probs=56.6

Q ss_pred             HhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 018759           41 LWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRS  120 (351)
Q Consensus        41 L~~L~~~iqda~~~~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~reeL~~~ir~  120 (351)
                      +.+=++.|.++...+..++.+|+++...-.+   ..+.+.+..+++...+..+..+...++.+.+.+..|.+-|..+.|+
T Consensus        33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~---~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRA  109 (265)
T COG3883          33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEE---IQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARA  109 (265)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555666666666666666666555322   2234566666677777777888888888999999999999999987


Q ss_pred             HHHHh
Q 018759          121 LLVAG  125 (351)
Q Consensus       121 l~~~~  125 (351)
                      +-..|
T Consensus       110 mq~nG  114 (265)
T COG3883         110 MQVNG  114 (265)
T ss_pred             HHHcC
Confidence            66655

>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells

Probab=84.23  E-value=56  Score=34.88  Aligned_cols=47  Identities=19%  Similarity=0.070  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHhHHHhhcc--cc---cchHHHHHHHHHHHHHHHHHHhhhhc
Q 018759          127 ALSVARKRLQESNRLLAGE--KG---YGHLQKLQKMLRMRQQFMISQVSFLY  173 (351)
Q Consensus       127 ~l~~a~~~L~ea~~~L~~e--~~---~~~L~~l~~~L~~rR~~lv~qL~~Iy  173 (351)
                      .+-+|-..|.+++..+..-  ..   ..-++.+...+...|..+...|...|
T Consensus       123 ~~~~Aa~~L~~~~~~L~~l~~~~~~~~~i~~~Lk~e~~~lr~~L~~~L~~~w  174 (593)
T PF06248_consen  123 NYLDAADLLEELKSLLDDLKSSKFEELKILKLLKDEYSELRENLQYQLSEEW  174 (593)
T ss_pred             CHHHHHHHHHHHHHHHHhcCcCcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445666677777777642  11   12367888899999999999996555

These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=84.12  E-value=21  Score=36.91  Aligned_cols=29  Identities=17%  Similarity=0.072  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhccceeeC
Q 018759          151 LQKLQKMLRMRQQFMISQVSFLYPVKILV  179 (351)
Q Consensus       151 L~~l~~~L~~rR~~lv~qL~~IyPI~~~~  179 (351)
                      |..++.+-+.+|.++..+|..+|--...+
T Consensus       103 l~~l~~q~r~qr~~La~~L~A~~r~g~~p  131 (420)
T COG4942         103 LNALEVQEREQRRRLAEQLAALQRSGRNP  131 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence            44455566888888999998888764443

>PRK09343 prefoldin subunit beta; Provisional

Probab=83.78  E-value=26  Score=29.77  Aligned_cols=92  Identities=17%  Similarity=0.242  Sum_probs=44.0

Q ss_pred             hhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHH
Q 018759           33 DYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMS--MRSKVEKEDAKNQ  110 (351)
Q Consensus        33 ~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl~~~~~~~~~~~--~~~~~~~~~~~k~  110 (351)
                      .+++.+..+-.+..-|+.....+..|+.+++..--...+       ++.+.+.-. .=+.++.+.  .-...++.+++++
T Consensus         8 ~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~E-------L~~L~~d~~-VYk~VG~vlv~qd~~e~~~~l~~r   79 (121)
T PRK09343          8 EVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEE-------LEKLPDDTP-IYKIVGNLLVKVDKTKVEKELKER   79 (121)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHcCCCcch-hHHHhhHHHhhccHHHHHHHHHHH
Confidence            455666666666666666666666666665554443322       111110000 001111111  1133455666677


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHH
Q 018759          111 EERLSMEVRSLLVAGTALSVAR  132 (351)
Q Consensus       111 reeL~~~ir~l~~~~~~l~~a~  132 (351)
                      .+-+..+|.++......+.+.-
T Consensus        80 ~E~ie~~ik~lekq~~~l~~~l  101 (121)
T PRK09343         80 KELLELRSRTLEKQEKKLREKL  101 (121)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777766666655444333

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=83.75  E-value=84  Score=37.23  Aligned_cols=35  Identities=11%  Similarity=0.142  Sum_probs=18.2

Q ss_pred             hhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Q 018759           31 WEDYDQELARLWSLSSALSQADDKKQTLQQKLQSL   65 (351)
Q Consensus        31 ~~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~l   65 (351)
                      +++|+..|..|+..-..+..+.......+.+++.+
T Consensus       853 L~~y~~~l~~l~~~~~~L~~A~~~~~~a~~~le~a  887 (1353)
T TIGR02680       853 LKRFGDHLHTLEVAVRELRHAATRAAEQRARAARA  887 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556666555554455555555555555554443

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking

Probab=83.71  E-value=27  Score=29.91  Aligned_cols=81  Identities=19%  Similarity=0.268  Sum_probs=54.2

Q ss_pred             HhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 018759           41 LWSLSSALSQADDKKQTLQQKLQSLIQVKAES-LKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVR  119 (351)
Q Consensus        41 L~~L~~~iqda~~~~~~L~~qI~~lLe~~~~~-l~~~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~reeL~~~ir  119 (351)
                      =..++..|+......+.+.++|..++..+.+. +++...+.+++.-++..+..++.+....++++.++...-++++....
T Consensus        28 ~ld~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~~  107 (132)
T PF10392_consen   28 ELDISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYERLRSEVIEPYEKIQKLTS  107 (132)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            44567777788888888999999999987765 45666666666666665666666666666666666555555555444


Q ss_pred             HH
Q 018759          120 SL  121 (351)
Q Consensus       120 ~l  121 (351)
                      .|
T Consensus       108 ~L  109 (132)
T PF10392_consen  108 QL  109 (132)
T ss_pred             HH
Confidence            43

Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=82.82  E-value=92  Score=35.79  Aligned_cols=134  Identities=20%  Similarity=0.237  Sum_probs=64.9

Q ss_pred             HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------hhhhhhHHHHHHHHHHHHHHHHHHHHhhhH-
Q 018759           36 QELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAE-------------SLKRSNELEEMRERLEARRLLMEKMSMRSK-  101 (351)
Q Consensus        36 ~~L~rL~~L~~~iqda~~~~~~L~~qI~~lLe~~~~-------------~l~~~~~l~~~~~rl~~~~~~~~~~~~~~~-  101 (351)
                      +.||+    +.+|+|.-.+.++|.+.+.+.=+.+-.             .......+++++.+++..+..+.......- 
T Consensus       398 Qkl~K----~~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~  473 (1041)
T KOG0243|consen  398 QKLMK----KTLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMN  473 (1041)
T ss_pred             hHHHH----HHHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34566    677888888888888888765433221             112223345555555555444433322222 


Q ss_pred             --HHHHHHHHHHHHHH----HHHHHHHHHhhHHHHHHHHHHHhHHHhh-cccccchHHHHHHHHHHHHHHHHHHhhhhc
Q 018759          102 --VEKEDAKNQEERLS----MEVRSLLVAGTALSVARKRLQESNRLLA-GEKGYGHLQKLQKMLRMRQQFMISQVSFLY  173 (351)
Q Consensus       102 --~~~~~~~k~reeL~----~~ir~l~~~~~~l~~a~~~L~ea~~~L~-~e~~~~~L~~l~~~L~~rR~~lv~qL~~Iy  173 (351)
                        ...+.+.++.+.++    .+...+....+.+..+...|.+...... .+.....+.+....+++.-..+..+++.+|
T Consensus       474 ~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~  552 (1041)
T KOG0243|consen  474 QLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLF  552 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              22223334444444    4444555555555555555544322222 111112233334445555555556666665

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.96  E-value=28  Score=33.82  Aligned_cols=80  Identities=9%  Similarity=0.178  Sum_probs=52.8

Q ss_pred             hHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 018759           34 YDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEER  113 (351)
Q Consensus        34 ~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~ree  113 (351)
                      +.+.=..|.++....+++..+.+.|..+|+++.....+   ...++++....+...+..++.....++...+-+.+|-..
T Consensus        33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~---~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRA  109 (265)
T COG3883          33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDE---LQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARA  109 (265)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55566677888889999999999999999888876543   234455555555555555555555555555555555554


Q ss_pred             HHH
Q 018759          114 LSM  116 (351)
Q Consensus       114 L~~  116 (351)
                      ++.
T Consensus       110 mq~  112 (265)
T COG3883         110 MQV  112 (265)
T ss_pred             HHH
Confidence            443

>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events []

Probab=81.89  E-value=62  Score=32.89  Aligned_cols=130  Identities=17%  Similarity=0.235  Sum_probs=71.8

Q ss_pred             HHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 018759           40 RLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLK-RSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEV  118 (351)
Q Consensus        40 rL~~L~~~iqda~~~~~~L~~qI~~lLe~~~~~l~-~~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~reeL~~~i  118 (351)
                      .|.+|+.-|.........|..+|...++.....-. ....+++++..+...-..+..+.    ...++.+.-..+++..|
T Consensus        19 SL~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik----~kA~~sE~~V~~it~dI   94 (383)
T PF04100_consen   19 SLSNLDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIK----SKAEESEQMVQEITRDI   94 (383)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence            46788999999999999999999999987653221 12344555444444334443322    22233333344455555


Q ss_pred             HHHHHHhhHHH-----------------------------HHHHHHHHhHHHhhc---ccccchHHHHHHHHHHHHHHHH
Q 018759          119 RSLLVAGTALS-----------------------------VARKRLQESNRLLAG---EKGYGHLQKLQKMLRMRQQFMI  166 (351)
Q Consensus       119 r~l~~~~~~l~-----------------------------~a~~~L~ea~~~L~~---e~~~~~L~~l~~~L~~rR~~lv  166 (351)
                      +.|-.+.+.|.                             ++..-|+..++++..   -++..++..+...+...+..+.
T Consensus        95 k~LD~AKrNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~~L~av~~L~~~F~~yksi~~I~~L~~~i~~l~~~L~  174 (383)
T PF04100_consen   95 KQLDNAKRNLTQSITTLKRLQMLVTAVEQLKELAKKRQYKEIASLLQAVKELLEHFKPYKSIPQIAELSKRIDQLQNELK  174 (383)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHH
Confidence            44333333221                             111112222222221   1222346688888899999999


Q ss_pred             HHhhhhc
Q 018759          167 SQVSFLY  173 (351)
Q Consensus       167 ~qL~~Iy  173 (351)
                      .++..=|
T Consensus       175 ~qI~~df  181 (383)
T PF04100_consen  175 EQIFEDF  181 (383)
T ss_pred             HHHHHHH
Confidence            9998744

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=81.39  E-value=33  Score=29.34  Aligned_cols=26  Identities=27%  Similarity=0.368  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018759           44 LSSALSQADDKKQTLQQKLQSLIQVK   69 (351)
Q Consensus        44 L~~~iqda~~~~~~L~~qI~~lLe~~   69 (351)
                      |++.|.....+...++.+|..+-..+
T Consensus        21 L~s~lr~~E~E~~~l~~el~~l~~~r   46 (120)
T PF12325_consen   21 LQSQLRRLEGELASLQEELARLEAER   46 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555555555555555555544

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=80.92  E-value=1.1e+02  Score=35.15  Aligned_cols=47  Identities=17%  Similarity=0.222  Sum_probs=40.3

Q ss_pred             ceeehhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018759           27 KVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESL   73 (351)
Q Consensus        27 ~~~~~~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~lLe~~~~~l   73 (351)
                      +-+.|-.+-..-+.|.++..-|+..++....++.+|+.......+..
T Consensus       269 ~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r  315 (1074)
T KOG0250|consen  269 AKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEAR  315 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34679888888889999999999999999999999999888776654

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=80.92  E-value=68  Score=37.39  Aligned_cols=27  Identities=19%  Similarity=0.100  Sum_probs=16.4

Q ss_pred             chhhHHHH--HHHHHHHHHHHHHhcCCCC
Q 018759          308 DATRAAYA--VFLLNKGTFNLRNRINRSW  334 (351)
Q Consensus       308 ~~~rF~ya--V~LLNknI~qL~~~~Gl~~  334 (351)
                      +++.-.|+  +.=|||-++.++.++..+|
T Consensus      1723 ~~~L~~~~aeL~~Le~r~~~vl~~I~~rv 1751 (1758)
T KOG0994|consen 1723 EQALEDKAAELAGLEKRVESVLDHINERV 1751 (1758)
T ss_pred             hHHHHHHHHHhhhHHHHHHHHHHHHhhhh
Confidence            34433333  3447888888887776655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	351
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 56/397 (14%), Positives = 111/397 (27%), Gaps = 132/397 (33%)

Query: 29  IEW------EDYDQELARLWSLSSAL-----SQAD------DKKQTLQQKLQSLIQVK-- 69
           I W         +  L  L  L   +     S++D       +  ++Q +L+ L++ K  
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243

Query: 70  AESL------KRSNELEEM----------RERLEARRLLMEKMSMRSKVEKEDAKNQEER 113
              L      + +                R +     L     +  S          +E 
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303

Query: 114 -------LSMEVRSL--LVAGT---ALSVARKRLQE-SNRLLAGEKGYGHLQ--KLQKML 158
                  L    + L   V  T    LS+  + +++           + H+   KL  ++
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW----DNWKHVNCDKLTTII 359

Query: 159 R----------MRQQFM---ISQVSFLYPVKILV---GPKQEQELESFPSGNRSGNSAAS 202
                       R+ F    +   S   P  +L        + ++    +      S   
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK-YSLVE 418

Query: 203 KPVNPGSLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPLRYP 262
           K     +++I  ++L            + K    +  AL    H  S++  Y  +P  + 
Sbjct: 419 KQPKESTISIPSIYL------------ELKVKLENEYAL----H-RSIVDHY-NIPKTFD 460

Query: 263 LRLGGSHTYINDYAPSIEPTSD--LSSNIA--LSTNTKPAEFPLFLEGQDATRAAYAVFL 318
                     +D  P   P  D    S+I   L     P    LF       R  +    
Sbjct: 461 S---------DDLIP---PYLDQYFYSHIGHHLKNIEHPERMTLF-------RMVF---- 497

Query: 319 LNKGTFNLRNRINRSWIDYIVRCTCSLC-----LLDT 350
                 + R      +++  +R   +       +L+T
Sbjct: 498 -----LDFR------FLEQKIRHDSTAWNASGSILNT 523

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 51/329 (15%), Positives = 99/329 (30%), Gaps = 98/329 (29%)

Query: 19  KAIDPENVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNE 78
              +P  + +I  E     LA  W         D+ K     KL ++I+     L    E
Sbjct: 323 LTTNPRRLSII-AESIRDGLAT-W---------DNWKHVNCDKLTTIIESSLNVL----E 367

Query: 79  LEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSM--------EVRSLLVAGTALSV 130
             E R+  +   +               A      LS+        +V  ++      S+
Sbjct: 368 PAEYRKMFDRLSVFP-----------PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416

Query: 131 ARKRLQESNRLLAGEKGYG-HLQKLQKMLRMRQ--QFMISQVSFLYPVKILVGPKQEQEL 187
             K+ +ES   +        +L+   K+       + ++      Y              
Sbjct: 417 VEKQPKESTISI-----PSIYLELKVKLENEYALHRSIVDH----Y-----------NIP 456

Query: 188 ESFPSGNRSGNSAASKPVNPG-SLTILGLHL-TILPFTKMSLFTD--------KKEVQRS 237
           ++F S +         P       + +G HL  I    +M+LF          +++++  
Sbjct: 457 KTFDSDDL------IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD 510

Query: 238 ATALGYIAHVVSLIASYLEVPLR-YPLRLGGSHTYINDYAPSIEP-TSDL-------SSN 288
           +TA      +++ +       L+ Y         YI D  P  E   + +         N
Sbjct: 511 STAWNASGSILNTLQQ-----LKFY-------KPYICDNDPKYERLVNAILDFLPKIEEN 558

Query: 289 IALSTNTKPAEFPLFLEG----QDATRAA 313
           +  S  T      L  E     ++A +  
Sbjct: 559 LICSKYTDLLRIALMAEDEAIFEEAHKQV 587

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 21/136 (15%), Positives = 49/136 (36%), Gaps = 2/136 (1%)

Query: 36   QELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEK 95
             E   +          ++K   LQ+K+    +     L++ N LE        +     +
Sbjct: 911  IEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVE 970

Query: 96   MSMRSKVEKEDAKNQEERLSMEVRSLLVAGTALSVARKRLQESNRLLAG--EKGYGHLQK 153
                S+ E ++A N+   L  E+  L          +K ++E         E+    L++
Sbjct: 971  RLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKE 1030

Query: 154  LQKMLRMRQQFMISQV 169
               +L+  ++ +  ++
Sbjct: 1031 QNTLLKTEKEELNRRI 1046

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	351
4ddp_A	210	Beclin-1; ECD, autophagy, membrane binding, membra	98.84
3vp7_A	220	Vacuolar protein sorting-associated protein 30; ta	98.64
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	86.04
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	83.64
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	83.61
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	83.49
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	82.34
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	82.0
2w83_C	77	C-JUN-amino-terminal kinase-interacting protein 4;	81.62
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	80.75

>4ddp_A Beclin-1; ECD, autophagy, membrane binding, membrane protein; 1.55A {Homo sapiens}

Probab=98.84  E-value=1e-08  Score=93.61  Aligned_cols=97  Identities=21%  Similarity=0.311  Sum_probs=78.9

Q ss_pred             ceEEeceecCCCcccccCCCCChhHHHHHHhHhhHHHHHHHHHHHHcCCCC-CcceeecCCcceeccCCCCCCCCCcccc
Q 018759          209 SLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPL-RYPLRLGGSHTYINDYAPSIEPTSDLSS  287 (351)
Q Consensus       209 ~~tI~Gl~LP~~~~~~~~~f~~~~~~e~isaALGyvAhlV~Lls~YL~VpL-pYPi~~~gSrSyI~D~i~~~~~ss~~~~  287 (351)
                      .=||.|+.|.-.+....+|       .+|+||+|++|.|+..||.+|++.+ +|.+.|+||.|+|.+...          
T Consensus        42 fgtINglRLGrlp~~~V~W-------~EINAAwGq~~LLL~tla~~l~~~f~~y~L~P~GS~S~I~~~~~----------  104 (210)
T 4ddp_A           42 FGTINNFRLGRLPSVPVEW-------NEINAAWGQTVLLLHALANKMGLKFQRYRLVPYGNHSYLESLTD----------  104 (210)
T ss_dssp             EEEETTEECCCBTTBCCCH-------HHHHHHHHHHHHHHHHHHHHHTCCCSSEEEECCGGGCEEEESSC----------
T ss_pred             ceeEcccccCCCCCCCCCH-------HHHHHHHHHHHHHHHHHHHHcCCCccceeEEecCCcceeeEecC----------
Confidence            4489999998765322221       3599999999999999999999999 799999999999987632          


Q ss_pred             cccccCCCCCcccCCccCCCc----hhhHHHHHHHHHHHHHHHHHhc
Q 018759          288 NIALSTNTKPAEFPLFLEGQD----ATRAAYAVFLLNKGTFNLRNRI  330 (351)
Q Consensus       288 ~~~~~~~~~~r~fPLf~~~~~----~~rF~yaV~LLNknI~qL~~~~  330 (351)
                              ....||||..|.-    ..+|+-|+--+-.-+.|++...
T Consensus       105 --------~~~~l~Ly~sg~~~~f~~~kFD~Am~afL~cl~q~~~~~  143 (210)
T 4ddp_A          105 --------KSKELPLYCSGGLRFFWDNKFDHAMVAFLDCVQQFKEEV  143 (210)
T ss_dssp             --------TTCCEESCCCSSCGGGCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------CCeEEeceeCCCccccccccccHHHHHHHHHHHHHHHHH
Confidence                    2358999987653    3599999999999999998766

>3vp7_A Vacuolar protein sorting-associated protein 30; targeting, PI3-kinase complex I, PRE-autophagosomal structur protein transport; 2.30A {Saccharomyces cerevisiae}

Probab=98.64  E-value=5.4e-08  Score=89.35  Aligned_cols=109  Identities=19%  Similarity=0.237  Sum_probs=76.1

Q ss_pred             ceEEeceecCCCcccccCCCCChhHHHHHHhHhhHHHHHHHHHHHHcCCCC-CcceeecCCcceeccCCC-CCCCCCccc
Q 018759          209 SLTILGLHLTILPFTKMSLFTDKKEVQRSATALGYIAHVVSLIASYLEVPL-RYPLRLGGSHTYINDYAP-SIEPTSDLS  286 (351)
Q Consensus       209 ~~tI~Gl~LP~~~~~~~~~f~~~~~~e~isaALGyvAhlV~Lls~YL~VpL-pYPi~~~gSrSyI~D~i~-~~~~ss~~~  286 (351)
                      .=||.|+.|.-.+....+|       .+|+||+|++|.|++.||..|++.+ .|.|.|+||.|+|.+..- ..+-..+  
T Consensus        16 fgTINglRLGrl~~~~V~W-------~EINAAwGq~~LLL~tla~kl~~~f~~Y~L~PmGS~S~I~~~~~~~~~~~~~--   86 (220)
T 3vp7_A           16 FATINGLRLGSIPESVVPW-------KEINAALGQLILLLATINKNLKINLVDYELQPMGSFSKIKKRMVNSVEYNNS--   86 (220)
T ss_dssp             EEEETTEEECCBTTBCCCH-------HHHHHHHHHHHHHHHHHHHHTTCCCSSEEEECCGGGCEEEEEC-----------
T ss_pred             ceeEcccccCCCCCCCCCH-------HHHHHHHHHHHHHHHHHHHHhCCCcccceEEeCCCcceEeeccccccccccc--
Confidence            4489999998765222222       3599999999999999999999999 599999999999998431 1000000  


Q ss_pred             ccccccCCCCCcccCCccCCC--------chhhHHHHHHHHHHHHHHHHHh
Q 018759          287 SNIALSTNTKPAEFPLFLEGQ--------DATRAAYAVFLLNKGTFNLRNR  329 (351)
Q Consensus       287 ~~~~~~~~~~~r~fPLf~~~~--------~~~rF~yaV~LLNknI~qL~~~  329 (351)
                      +.   ........||||..+.        -+.+|+-|+--+=.-+.|+...
T Consensus        87 ~~---~~~~~~~~l~Ly~s~~~~lg~~f~~~~kFD~aMvafL~cl~ql~~~  134 (220)
T 3vp7_A           87 TT---NAPGDWLILPVYYDENFNLGRIFRKETKFDKSLETTLEIISEITRQ  134 (220)
T ss_dssp             ---------CEEEEESSCCC-----------CHHHHHHHHHHHHHHHHHHH
T ss_pred             cc---ccCCCCeEEecccCCCcccccccccccchhHHHHHHHHHHHHHHHH
Confidence            00   0011346899999874        1359999999998888888874

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=86.04  E-value=13  Score=30.34  Aligned_cols=99  Identities=13%  Similarity=0.163  Sum_probs=52.8

Q ss_pred             CCCCCcccCCCCCcceeehhhhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 018759           13 HPTSTSKAIDPENVKVIEWEDYDQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLL   92 (351)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~L~rL~~L~~~iqda~~~~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl~~~~~~   92 (351)
                      |..|..-..-++.+.-++..+|...   |.....+|.+-....+.|+.+|..    ..+.   ...++.++.+++.-+.-
T Consensus         8 ~~~~~~~~~~~~~~~~~ei~~L~~~---L~~AEeaL~~Kq~~idelk~ei~q----~~~~---lE~I~vLkaQv~IY~~D   77 (110)
T 2v4h_A            8 HHHSSGLVPRGSHMASMQLEDLRQQ---LQQAEEALVAKQELIDKLKEEAEQ----HKIV---METVPVLKAQADIYKAD   77 (110)
T ss_dssp             -----CCCCTTCCSSCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH----HHHH---HTHHHHHHHHHHHHHHH
T ss_pred             cccccCCCcchhHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH----HHHH---HHHHHHHHHHHHHHHHH
Confidence            3334444444555555666666555   455566666666666666665544    2222   23456666655533333


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018759           93 MEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAG  125 (351)
Q Consensus        93 ~~~~~~~~~~~~~~~~k~reeL~~~ir~l~~~~  125 (351)
                      -.    ..+..++.+...+++|..+++.|....
T Consensus        78 F~----aERadREkl~~eKe~L~~ql~~Lq~q~  106 (110)
T 2v4h_A           78 FQ----AERHAREKLVEKKEYLQEQLEQLQREF  106 (110)
T ss_dssp             HH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Hc----cchhhHHHHHhHHHHHHHHHHHHHHHH
Confidence            22    255566667777777877777665543

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=83.64  E-value=15  Score=45.19  Aligned_cols=44  Identities=16%  Similarity=0.234  Sum_probs=24.3

Q ss_pred             hHHHHHHHHHHHhHHHhhcccc-cchHHHHHHHHHHHHHHHHHHh
Q 018759          126 TALSVARKRLQESNRLLAGEKG-YGHLQKLQKMLRMRQQFMISQV  169 (351)
Q Consensus       126 ~~l~~a~~~L~ea~~~L~~e~~-~~~L~~l~~~L~~rR~~lv~qL  169 (351)
                      ..+..++.+|.-|..++.+-.+ +.|=......+......++++.
T Consensus      2063 ~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~GD~ 2107 (3245)
T 3vkg_A         2063 TESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGDV 2107 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhccHHH
Confidence            4455677777777776553221 2333333455666666666664

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=83.61  E-value=21  Score=30.76  Aligned_cols=87  Identities=13%  Similarity=0.179  Sum_probs=50.1

Q ss_pred             HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 018759           35 DQELARLWSLSSALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERL  114 (351)
Q Consensus        35 ~~~L~rL~~L~~~iqda~~~~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~reeL  114 (351)
                      =+++-+-.+|++.|..+.........+|..+-..+...-....++......+.    .+.......+..+..+++.+..+
T Consensus         9 I~Ain~qs~LeD~L~~~R~el~~~~~ri~~lE~~r~~~~~l~~~~~~~~~e~~----~L~~~l~~E~~~R~~aE~~~~~i   84 (154)
T 2ocy_A            9 IESVDKQSHLEEQLNKSLKTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVK----RLREDIAKENELRTKAEEEADKL   84 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHTHHHHHHHHHH----HHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            35666777788888888888776666666544433222111122223223332    22233344666677788888888


Q ss_pred             HHHHHHHHHHh
Q 018759          115 SMEVRSLLVAG  125 (351)
Q Consensus       115 ~~~ir~l~~~~  125 (351)
                      ...+..|....
T Consensus        85 e~ElEeLTasL   95 (154)
T 2ocy_A           85 NKEVEDLTASL   95 (154)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88887766554

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=83.49  E-value=26  Score=31.87  Aligned_cols=14  Identities=0%  Similarity=0.268  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHHHHh
Q 018759          156 KMLRMRQQFMISQV  169 (351)
Q Consensus       156 ~~L~~rR~~lv~qL  169 (351)
                      ..+...|..+...+
T Consensus       160 ~~l~~~r~~l~~~i  173 (256)
T 3na7_A          160 QIIFKKKEDLVEKT  173 (256)
T ss_dssp             HHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHhcC
Confidence            34455565555543

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=82.34  E-value=25  Score=43.41  Aligned_cols=12  Identities=17%  Similarity=0.553  Sum_probs=9.3

Q ss_pred             CCcccCCccCCC
Q 018759          296 KPAEFPLFLEGQ  307 (351)
Q Consensus       296 ~~r~fPLf~~~~  307 (351)
                      ..+.|||..|.+
T Consensus      2182 ~~~R~PLlIDPq 2193 (3245)
T 3vkg_A         2182 RFNRYPLVIDPS 2193 (3245)
T ss_dssp             SCSSCEEEECTT
T ss_pred             cCCCceEEEChH
Confidence            457899999865

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=82.00  E-value=6  Score=44.05  Aligned_cols=8  Identities=13%  Similarity=0.127  Sum_probs=2.9

Q ss_pred             HHHHHHHH
Q 018759           55 KQTLQQKL   62 (351)
Q Consensus        55 ~~~L~~qI   62 (351)
                      ...|+.++
T Consensus       887 l~~Le~e~  894 (1184)
T 1i84_S          887 HTQLCEEK  894 (1184)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            33333333

>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}

Probab=81.62  E-value=14  Score=28.22  Aligned_cols=30  Identities=20%  Similarity=0.359  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 018759           57 TLQQKLQSLIQVKAESLKRSNELEEMRERL   86 (351)
Q Consensus        57 ~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl   86 (351)
                      ...++++.+|..+.+.+.++|++...+..|
T Consensus         6 gmgkevEnLi~EN~eLl~TKNaLnvvk~DL   35 (77)
T 2w83_C            6 FMGREVENLILENTQLLETKNALNIVKNDL   35 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456788999999988888888887765554

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=80.75  E-value=20  Score=29.54  Aligned_cols=83  Identities=12%  Similarity=0.137  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018759           46 SALSQADDKKQTLQQKLQSLIQVKAESLKRSNELEEMRERLEARRLLMEKMSMRSKVEKEDAKNQEERLSMEVRSLLVAG  125 (351)
Q Consensus        46 ~~iqda~~~~~~L~~qI~~lLe~~~~~l~~~~~l~~~~~rl~~~~~~~~~~~~~~~~~~~~~~k~reeL~~~ir~l~~~~  125 (351)
                      ..|-.+..+.+.|..+++.+....+.      .+.+++.++......++.    .+..+..+.--.+.|+.....+....
T Consensus        15 ~~Ie~Lkreie~lk~ele~l~~E~q~------~v~ql~~~i~~Le~eL~e----~r~~~q~a~~e~e~Lr~e~~~l~~~~   84 (120)
T 3i00_A           15 HLIERLYREISGLKAQLENMKTESQR------VVLQLKGHVSELEADLAE----QQHLRQQAADDCEFLRAELDELRRQR   84 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44666677777788888877665432      345555555443333333    44455555566677777777665555


Q ss_pred             hHHHHHHHHHHHh
Q 018759          126 TALSVARKRLQES  138 (351)
Q Consensus       126 ~~l~~a~~~L~ea  138 (351)
                      ..-..++..+.++
T Consensus        85 ~~~~~~q~~~~e~   97 (120)
T 3i00_A           85 EDTEKAQRSLSEI   97 (120)
T ss_dssp             C------------
T ss_pred             hhhHHHHHHHHHH
Confidence            5445566566554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00