Citrus Sinensis ID: 018827

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350
Protein Sequence
MVTGNNSHQEDGDRQQPAAKGGGATRSWGTTVSGQSVSTSGSVGSPSQSMATPASDSTFLRLNHLDIHGDDAGSQGAVVGGKKKKRGQRAGGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSSGNAPSGGVALPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFKLHDDNSVLKAMKFCERQQSDDMAQSFPADDGEGSSMAGVYQPPQLLPPPRANNSNRPPTSPPVPGILKARVKHEH
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEccccEEEEEEccccEEEEEEEccccEEEEccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccccHccHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEEccccEEEEEEEccccEEEEEEcccccEEEccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccc
Coil and Loop (DISEMBL)
mvtgnnshqedgdrqqpaakgggatrswgttvsgqsvstsgsvgspsqsmatpasdstflrlnhldihgddagsqgavvggkkkkrgqragggdksgrgLRQFSMKVCEKVESKGRTTYNEVADELVAefadpsnslatpdqqqydeknIRRRVYDALNVLMAMDIISKDKkeiqwkglprtslndIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRnerlyssgnapsggvalpfilvqtrphatveveisedmqlvhfdfnstpfklhddNSVLKAMKFCErqqsddmaqsfpaddgegssmagvyqppqllppprannsnrpptsppvpgiLKARVKHEH
Flexible Loop (DISEMBL)
mvtgnnshqedgdrqqpaakgggatrswgttvsgqsvstsgsvgspsqSMATPASDSTFLRLNHLDIHGddagsqgavvggkkkkrgqragggdksgrglrqfSMKVCEKVESKGRTTYNEVADELVAEfadpsnslatpdqqqydeknIRRRVYDALNVLMAMDIISKdkkeiqwkglprtslndieeLKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSSGNAPSGGVALPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFKLHDDNSVLKAMKFCERQQSDDMAQSFPADDGEGSSMAGVYQPPQLLPPPRannsnrpptsppvpgiLKARVKHEH
Low Complexity Region (SEG)
MVTGNNSHQEDGDRQQPAAKGGGATRswgttvsgqsvstsgsvgspsqsMATPASDSTFLRLNHLDIHGDDAGSqgavvggkkkkrgqragggDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSSGNAPSGGVALPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFKLHDDNSVLKAMKFCERQQSDDMAQSFPADDGEGSSMAGVYQPPQLLppprannsnrpptsppvpGILKARVKHEH
Disordered region (IsUnstruct)
****************************************************************************************************************************************************NIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSSGNAPSGGVALPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFKLHDDNSVLKAMKF**************************************************************
Disordered Region (DISOPRED)
*****************************************************************************************************QFSMKVCEKVESKGRTTYNEVADELVA**********************RRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSL*********************AYLQELEDQFVGLQNLI******************LPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFKLHDDNSVLKAMKFC***************************************************IL*AR*****
Disordered Region (DISEMBL)
******************************************************SDSTFLRLNHLDIHGDDA*************************RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSSGNAPSGGVALPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFKLHDDNSVLKAMKFCERQQSDDMAQSFPADDGEGSSMAGVYQPPQLLPPPRANNSNRPPTSPPVPGILKARVKHEH
Disordered Region (DISPRO)
*************************************************************************************************RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSSGNAPSGGVALPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFKLHDDNSVLKAMKFCE******************************************PTSPPVPGILKARVK***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVTGNNSHQEDGDRQQPAAKGGGATRSWGTTVSGQSVSTSGSVGSPSQSMATPASDSTFLRLNHLDIHGDDAGSQGAVVGGKKKKRGQRAGGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxYSSGNAPSGGVALPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFKLHDDNSVLKAMKFCERQQSDDMAQSFPADDGEGSSMAGVYQPPQLLPPPRANNSNRPPTSPPVPGILKARVKHEH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	350	2.2.26 [Sep-21-2011]
Q9FNY2	385	Transcription factor-like	yes	no	0.922	0.838	0.683	1e-129
Q9FNY3	292	Transcription factor-like	no	no	0.58	0.695	0.519	6e-61
Q14186	410	Transcription factor Dp-1	yes	no	0.565	0.482	0.517	3e-50
Q17QZ4	410	Transcription factor Dp-1	yes	no	0.565	0.482	0.507	7e-50
Q08639	410	Transcription factor Dp-1	yes	no	0.565	0.482	0.507	1e-49
Q14188	446	Transcription factor Dp-2	no	no	0.677	0.531	0.451	3e-47
Q24318	445	Transcription factor Dp O	yes	no	0.557	0.438	0.487	1e-44
Q5H9I0	405	Transcription factor Dp f	no	no	0.565	0.488	0.428	2e-38
Q22703	598	Transcription factor dpl-	yes	no	0.568	0.332	0.427	6e-38
Q64163	446	Transcription factor Dp-2	no	no	0.56	0.439	0.455	3e-37

>sp|Q9FNY2|DPB_ARATH Transcription factor-like protein DPB OS=Arabidopsis thaliana GN=DPB PE=1 SV=1

 Score =  459 bits (1182), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 251/367 (68%), Positives = 276/367 (75%), Gaps = 44/367 (11%)

Query: 24  ATRSWGTTVSGQSVSTSGSVGSPSQ------SMATPASDSTFLRLNHLDIHGDDAGSQGA 77
           +TRSWGT VSGQSVSTSGS+GSPS       ++ T  SD+TF RLN+LDI GDDAGSQGA
Sbjct: 23  STRSWGTAVSGQSVSTSGSMGSPSSRSEQTITVVTSTSDTTFQRLNNLDIQGDDAGSQGA 82

Query: 78  VVGGKKKKRGQRAGGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSL 137
             G KKKKRGQRA G DK+GRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFA P+N  
Sbjct: 83  -SGVKKKKRGQRAAGPDKTGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFALPNNDG 141

Query: 138 ATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGL 197
            +PDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQW+GLPRTSL+DIEELK ERL L
Sbjct: 142 TSPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWRGLPRTSLSDIEELKNERLSL 201

Query: 198 RNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSSGNAPSGGVALPFILVQTRPHATVEVE 257
           RNRIEKKTAY QELE+Q+VGLQNLIQRNE LYSSGNAPSGGVALPFILVQTRPHATVEVE
Sbjct: 202 RNRIEKKTAYSQELEEQYVGLQNLIQRNEHLYSSGNAPSGGVALPFILVQTRPHATVEVE 261

Query: 258 ISEDMQLVHFDFNSTPFKLHDDNSVLKAMKFCE--------RQQSDDMAQSF-PADDGEG 308
           ISEDMQLVHFDFNSTPF+LHDDN VLK MKFC+        R  S  +  +F P +  +G
Sbjct: 262 ISEDMQLVHFDFNSTPFELHDDNFVLKTMKFCDQPPQQPNGRNNSQLVCHNFTPENPNKG 321

Query: 309 SSMAGVYQPPQL--------------------LPPPRANN-----SNRPPTSPPVPGILK 343
            S       PQL                    +P P  NN        P  SP +PGI+ 
Sbjct: 322 PSTGPT---PQLDMYETHLQSQQHQQHSQLQIIPMPETNNVTSSADTAPVKSPSLPGIMN 378

Query: 344 ARVKHEH 350
           + +K E+
Sbjct: 379 SSMKPEN 385

Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNY3|DPA_ARATH Transcription factor-like protein DPA OS=Arabidopsis thaliana GN=DPA PE=1 SV=1

 Score =  234 bits (598), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 109/210 (51%), Positives = 154/210 (73%), Gaps = 7/210 (3%)

Query: 79  VGGKKKKRGQRAGGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLA 138
           +G +KK + + +GGG      LRQFS+ VC+K+E+K  TTY EVADE++++FA    +  
Sbjct: 39  IGSEKKGQSRTSGGG------LRQFSVMVCQKLEAKKITTYKEVADEIISDFATIKQNAE 92

Query: 139 TP-DQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGL 197
            P ++ +Y+EKNIRRRVYDALNV MA+DII++DKKEI+WKGLP T   D+EE+K +R  +
Sbjct: 93  KPLNENEYNEKNIRRRVYDALNVFMALDIIARDKKEIRWKGLPITCKKDVEEVKMDRNKV 152

Query: 198 RNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSSGNAPSGGVALPFILVQTRPHATVEVE 257
            + ++KK A+L+EL ++   L++L+ RN+ +      P+ G  LPFIL++T PHA VE+E
Sbjct: 153 MSSVQKKAAFLKELREKVSSLESLMSRNQEMVVKTQGPAEGFTLPFILLETNPHAVVEIE 212

Query: 258 ISEDMQLVHFDFNSTPFKLHDDNSVLKAMK 287
           ISEDMQLVH DFNSTPF +HDD  +LK M+
Sbjct: 213 ISEDMQLVHLDFNSTPFSVHDDAYILKLMQ 242

Involved in the regulation of the G1/S transition. Increases the DNA binding and the transactivation activities of E2F proteins after heterodimerization. The complex DPA/E2FA promotes cell division and acts as a regulator of the endocycle. Positively regulates the activity of S phase-specic genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q14186|TFDP1_HUMAN Transcription factor Dp-1 OS=Homo sapiens GN=TFDP1 PE=1 SV=1

 Score =  199 bits (506), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 105/203 (51%), Positives = 139/203 (68%), Gaps = 5/203 (2%)

Query: 87  GQRAGGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYD 146
           G+R   G+K+G+GLR FSMKVCEKV+ KG T+YNEVADELVAEF+   N +  P++  YD
Sbjct: 103 GKRNRKGEKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVAEFSAADNHI-LPNESAYD 161

Query: 147 EKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTA 206
           +KNIRRRVYDALNVLMAM+IISK+KKEI+W GLP  S  + + L+ ER     RI++K +
Sbjct: 162 QKNIRRRVYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQNLEVERQRRLERIKQKQS 221

Query: 207 YLQELEDQFVGLQNLIQRN---ERLYSSGNAPSGGVALPFILVQTRPHATVEVEISEDMQ 263
            LQEL  Q +  +NL+QRN   E+  S    P+  + LPFI+V T     ++  IS D  
Sbjct: 222 QLQELILQQIAFKNLVQRNRHAEQQASRPPPPNSVIHLPFIIVNTSKKTVIDCSISNDKF 281

Query: 264 LVHFDFNSTPFKLHDDNSVLKAM 286
              F+F++T F++HDD  VLK M
Sbjct: 282 EYLFNFDNT-FEIHDDIEVLKRM 303

Can stimulate E2F-dependent transcription. Binds DNA cooperatively with E2F family members through the E2 recognition site, 5'-TTTC[CG]CGC-3', found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The DP2/E2F complex functions in the control of cell-cycle progression from G1 to S phase. The E2F-1/DP complex appears to mediate both cell proliferation and apoptosis.

Homo sapiens (taxid: 9606)

>sp|Q17QZ4|TFDP1_BOVIN Transcription factor Dp-1 OS=Bos taurus GN=TFDP1 PE=2 SV=1

 Score =  197 bits (502), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 103/203 (50%), Positives = 139/203 (68%), Gaps = 5/203 (2%)

Query: 87  GQRAGGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYD 146
           G+R   G+K+G+GLR FSMKVCEKV+ KG T+YNEVADELVAEF+  ++S   P +  YD
Sbjct: 103 GKRNRKGEKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVAEFS-AADSHILPSESAYD 161

Query: 147 EKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTA 206
           +KNIRRRVYDALNVLMAM+IISK+KKEI+W GLP  S  + + L+ ER     RI++K +
Sbjct: 162 QKNIRRRVYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQSLEVERQRRLERIKQKQS 221

Query: 207 YLQELEDQFVGLQNLIQRNERLYSSGN---APSGGVALPFILVQTRPHATVEVEISEDMQ 263
            LQEL  Q +  +NL+QRN ++    +    P+  + LPFI+V T     ++  IS D  
Sbjct: 222 QLQELILQQIAFKNLVQRNRQVEQQASRPPPPNSVIHLPFIIVNTSKKTVIDCSISNDKF 281

Query: 264 LVHFDFNSTPFKLHDDNSVLKAM 286
              F+F++T F++HDD  VLK M
Sbjct: 282 EYLFNFDNT-FEIHDDIEVLKRM 303

Can stimulate E2F-dependent transcription. Binds DNA cooperatively with E2F family members through the E2 recognition site, 5'-TTTC[CG]CGC-3', found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The DP2/E2F complex functions in the control of cell-cycle progression from G1 to S phase. The E2F-1/DP complex appears to mediate both cell proliferation and apoptosis.

Bos taurus (taxid: 9913)

>sp|Q08639|TFDP1_MOUSE Transcription factor Dp-1 OS=Mus musculus GN=Tfdp1 PE=1 SV=1

 Score =  197 bits (501), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 103/203 (50%), Positives = 137/203 (67%), Gaps = 5/203 (2%)

Query: 87  GQRAGGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYD 146
           G+R   G+K+G+GLR FSMKVCEKV+ KG T+YNEVADELVAEF+   N +  P++  YD
Sbjct: 103 GKRNRKGEKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVAEFSAADNHI-LPNESAYD 161

Query: 147 EKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTA 206
           +KNIRRRVYDALNVLMAM+IISK+KKEI+W GLP  S  + + L+ ER     RI++K +
Sbjct: 162 QKNIRRRVYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQNLEVERQRRLERIKQKQS 221

Query: 207 YLQELEDQFVGLQNLIQRNERLYSSGN---APSGGVALPFILVQTRPHATVEVEISEDMQ 263
            LQEL  Q +  +NL+QRN +          P+  + LPFI+V T     ++  IS D  
Sbjct: 222 QLQELILQQIAFKNLVQRNRQAEQQARRPPPPNSVIHLPFIIVNTSRKTVIDCSISNDKF 281

Query: 264 LVHFDFNSTPFKLHDDNSVLKAM 286
              F+F++T F++HDD  VLK M
Sbjct: 282 EYLFNFDNT-FEIHDDIEVLKRM 303

Can stimulate E2F-dependent transcription. Binds DNA cooperatively with E2F family members through the E2 recognition site, 5'-TTTC[CG]CGC-3', found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The DP2/E2F complex functions in the control of cell-cycle progression from G1 to S phase. The E2F-1/DP complex appears to mediate both cell proliferation and apoptosis.

Mus musculus (taxid: 10090)

>sp|Q14188|TFDP2_HUMAN Transcription factor Dp-2 OS=Homo sapiens GN=TFDP2 PE=1 SV=2

 Score =  189 bits (480), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 120/266 (45%), Positives = 162/266 (60%), Gaps = 29/266 (10%)

Query: 35  QSVSTSGSV--GSPSQSMATPASDSTFLRLNHLDIHGDDAGSQGAVVGGKKKKR------ 86
           Q +++SGSV  GSP     TPA     +   H+      A + G V G +K+ R      
Sbjct: 68  QRLTSSGSVLIGSP----YTPAP--AMVTQTHI------AEATGWVPGDRKRARKFIDSD 115

Query: 87  ---GQRAGGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQ 143
               +R+  GDK+G+GLR FSMKVCEKV+ KG T+YNEVADELV+EF + +N LA     
Sbjct: 116 FSESKRSKKGDKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHLAA--DS 173

Query: 144 QYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEK 203
            YD+KNIRRRVYDALNVLMAM+IISK+KKEI+W GLP  S  + + L+ E+     RI++
Sbjct: 174 AYDQKNIRRRVYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQNLEIEKQRRIERIKQ 233

Query: 204 KTAYLQELEDQFVGLQNLIQRNERLYSSGNAP---SGGVALPFILVQTRPHATVEVEISE 260
           K A LQEL  Q +  +NL+QRN +       P   +  + LPFI++ T     ++  IS 
Sbjct: 234 KRAQLQELLLQQIAFKNLVQRNRQNEQQNQGPPALNSTIQLPFIIINTSRKTVIDCSISS 293

Query: 261 DMQLVHFDFNSTPFKLHDDNSVLKAM 286
           D     F+F++T F++HDD  VLK M
Sbjct: 294 DKFEYLFNFDNT-FEIHDDIEVLKRM 318

Can stimulate E2F-dependent transcription. Binds DNA cooperatively with E2F family members through the E2 recognition site, 5'-TTTC[CG]CGC-3', found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The DP2/E2F complex functions in the control of cell-cycle progression from G1 to S phase. The E2F-1/DP complex appears to mediate both cell proliferation and apoptosis.

Homo sapiens (taxid: 9606)

>sp|Q24318|TFDP_DROME Transcription factor Dp OS=Drosophila melanogaster GN=Dp PE=1 SV=2

 Score =  180 bits (457), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 99/203 (48%), Positives = 128/203 (63%), Gaps = 8/203 (3%)

Query: 88  QRAGGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDE 147
           QR    DK+G+GLR FSMKVCEKVE KG+TTYNEVAD+LV+E  +  N+         D+
Sbjct: 158 QRKRKPDKAGKGLRHFSMKVCEKVEEKGKTTYNEVADDLVSE--EMKNNAY---DNNCDQ 212

Query: 148 KNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAY 207
           KNIRRRVYDALNVLMA+++ISKDKKEI+W GLP  S      L+ E    R RI++K   
Sbjct: 213 KNIRRRVYDALNVLMAINVISKDKKEIRWIGLPANSTETFLALEEENCQRRERIKQKNEM 272

Query: 208 LQELEDQFVGLQNLIQRNERLYSSGNAPS--GGVALPFILVQTRPHATVEVEISEDMQLV 265
           L+E+  Q V  + L++RN+R  S G  PS    + LPFI+V T     +   ++ D    
Sbjct: 273 LREMIMQHVAFKGLVERNKRNESQGVVPSPNASIQLPFIIVNTHKSTKINCSVTNDKSEY 332

Query: 266 HFDFNSTPFKLHDDNSVLKAMKF 288
            F F+ T F++HDD  VLK M F
Sbjct: 333 IFKFDKT-FEMHDDIEVLKRMGF 354

Component of the DREAM complex, a multiprotein complex that can both act as a transcription activator or repressor depending on the context. In follicle cells, the complex plays a central role in the site-specific DNA replication at the chorion loci. During development, the complex represses transcription of developmentally controlled E2F target genes. Can stimulate E2F-dependent transcription.

Drosophila melanogaster (taxid: 7227)

>sp|Q5H9I0|TFDP3_HUMAN Transcription factor Dp family member 3 OS=Homo sapiens GN=TFDP3 PE=1 SV=1

 Score =  159 bits (403), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 87/203 (42%), Positives = 125/203 (61%), Gaps = 5/203 (2%)

Query: 87  GQRAGGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYD 146
           GQ    G+K+G GL + SMKV E V+ KG T+  EV  ELVA+F   SN  A+P++  YD
Sbjct: 98  GQHNRKGEKNGMGLCRLSMKVWETVQRKGTTSCQEVVGELVAKFRAASNH-ASPNESAYD 156

Query: 147 EKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTA 206
            KNI+RR YDALNVLMAM+IIS++KK+I+W GL   S  + + L+ ER     RI++K +
Sbjct: 157 VKNIKRRTYDALNVLMAMNIISREKKKIKWIGLTTNSAQNCQNLRVERQKRLERIKQKQS 216

Query: 207 YLQELEDQFVGLQNLIQRNERL---YSSGNAPSGGVALPFILVQTRPHATVEVEISEDMQ 263
            LQ+L  Q +  +NL+ RN+ +    S    P+  + +PFI++ +     +   IS+D  
Sbjct: 217 ELQQLILQQIAFKNLVLRNQYVEEQVSQRPLPNSVIHVPFIIISSSKKTVINCSISDDKS 276

Query: 264 LVHFDFNSTPFKLHDDNSVLKAM 286
              F FNS+ F++HDD  VL  M
Sbjct: 277 EYLFKFNSS-FEIHDDTEVLMWM 298

Competitive inhibitor of E2F-mediated transactivation activity. Impairs E2F-mediated cell-cycle progression from G(1) to S phase.

Homo sapiens (taxid: 9606)

>sp|Q22703|TFDP1_CAEEL Transcription factor dpl-1 OS=Caenorhabditis elegans GN=dpl-1 PE=1 SV=2

 Score =  158 bits (399), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 88/206 (42%), Positives = 124/206 (60%), Gaps = 7/206 (3%)

Query: 99  GLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPD--QQQYDEKNIRRRVYD 156
           GLR FS KVCEKV+ KG T YNEVADELVA++   +N +   D  +Q+YD KNIRRRVYD
Sbjct: 72  GLRHFSTKVCEKVKEKGLTNYNEVADELVADYFQ-NNLIKQIDVVKQEYDMKNIRRRVYD 130

Query: 157 ALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELEDQFV 216
           ALNVL+AM+II+K KK+I+W GLP ++  +I  L+ E+      I  K   L+E+  Q V
Sbjct: 131 ALNVLLAMNIITKSKKDIRWIGLPASASQEISRLEEEKSRREASISSKKQALEEMVLQIV 190

Query: 217 GLQNLIQRNERLYSSGNAPSGGVA--LPFILVQTRPHATVEVEISEDMQLVHFDFNSTPF 274
             +NL++RN +       P       LPF+++ T   A VE  +S D     F F+   F
Sbjct: 191 SYKNLVERNRKNEHKNGRPENDTVLHLPFLIINTDKEANVECSVSSDKSEFLFSFDKK-F 249

Query: 275 KLHDDNSVLKAMKF-CERQQSDDMAQ 299
           ++HDD  +LK +   C  + ++  A+
Sbjct: 250 EIHDDFEILKKLNLACSLETTNPTAE 275

Synthetic multivulva class B (synMuvB) protein. SynMuvB proteins are required to repress the induction of vulval development by Ras signaling and probably act by forming the multiprotein DRM complex that repress transcription. Can stimulate E2F-dependent transcription.

Caenorhabditis elegans (taxid: 6239)

>sp|Q64163|TFDP2_MOUSE Transcription factor Dp-2 OS=Mus musculus GN=Tfdp2 PE=1 SV=2

 Score =  156 bits (394), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 92/202 (45%), Positives = 127/202 (62%), Gaps = 6/202 (2%)

Query: 88  QRAGGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDE 147
           +R+  GDK+G+GLR FSMKVCEKV+ KG T+YNEVADELV+EF + +N LA      YD+
Sbjct: 120 KRSKKGDKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHLAA--DSAYDQ 177

Query: 148 KNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAY 207
           +NIRRRVYDALNVLMAM+IIS      +   +   S  + + L+ E+     RI++K A 
Sbjct: 178 ENIRRRVYDALNVLMAMNIISSLPTGKKRNQVDCNSAQECQNLEIEKQRRIERIKQKRAQ 237

Query: 208 LQELEDQFVGLQNLIQRNERLYSSGNAP---SGGVALPFILVQTRPHATVEVEISEDMQL 264
           LQEL  Q +  +NL+QRN +       P   +  + LPFI++ T     ++  IS D   
Sbjct: 238 LQELLLQQIAFKNLVQRNRQNEQQNQGPPAVNSTIQLPFIIINTSRKTVIDCSISSDKFE 297

Query: 265 VHFDFNSTPFKLHDDNSVLKAM 286
             F+F++T F++HDD  VLK M
Sbjct: 298 YLFNFDNT-FEIHDDIEVLKRM 318

Can stimulate E2F-dependent transcription. Binds DNA cooperatively with E2F family members through the E2 recognition site, 5'-TTTC[CG]CGC-3', found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The DP2/E2F complex functions in the control of cell-cycle progression from G1 to S phase. The E2F-1/DP complex appears to mediate both cell proliferation and apoptosis.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	350
225440073	349	PREDICTED: transcription factor-like pro	0.982	0.985	0.833	1e-160
449438797	347	PREDICTED: transcription factor-like pro	0.954	0.962	0.791	1e-149
449476464	348	PREDICTED: transcription factor-like pro	0.954	0.959	0.789	1e-148
224138754	355	transcription factor DP, E2 dimerization	0.982	0.969	0.800	1e-145
33338106	353	transcription factor DP1 [Populus tremul	0.982	0.974	0.793	1e-143
224068777	299	transcription factor DP, E2 dimerization	0.854	1.0	0.840	1e-143
356538615	337	PREDICTED: transcription factor-like pro	0.894	0.928	0.815	1e-142
356497355	338	PREDICTED: transcription factor-like pro	0.897	0.928	0.806	1e-140
255556914	360	Transcription factor Dp-1, putative [Ric	0.988	0.961	0.771	1e-139
358248226	319	uncharacterized protein LOC100800599 [Gl	0.874	0.959	0.774	1e-137

>gi|225440073|ref|XP_002282450.1| PREDICTED: transcription factor-like protein DPB [Vitis vinifera] gi|297741646|emb|CBI32778.3| unnamed protein product [Vitis vinifera]

 Score =  569 bits (1467), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 296/355 (83%), Positives = 315/355 (88%), Gaps = 11/355 (3%)

Query: 1   MVTGNNSHQEDGDRQQPAAKGGGATRSWGTTVSGQSVSTSGSVGSPSQ----SMATPASD 56
           MVTG  SHQEDG++       GGATRSWGTTVSGQSVSTSGSVGSPS     ++ATPAS+
Sbjct: 1   MVTGG-SHQEDGEKNPATVSKGGATRSWGTTVSGQSVSTSGSVGSPSSRSEAALATPASE 59

Query: 57  STFLRLNHLDIHGDDAGSQGAVVGGKKKKRGQRAGGGDKSGRGLRQFSMKVCEKVESKGR 116
           +TFLRLNHLDIHGDDAGSQGA    +KKKRGQRA GGDKSGRGLRQFSMKVCEKVESKGR
Sbjct: 60  NTFLRLNHLDIHGDDAGSQGAA--NRKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGR 117

Query: 117 TTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQW 176
           TTYNEVADELVAEFADPSNSL +PDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQW
Sbjct: 118 TTYNEVADELVAEFADPSNSLTSPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQW 177

Query: 177 KGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSSGNAPS 236
           KGLPRTSLNDIEELK +R+GLR RIEKK AYLQELE+QFVGLQNLIQRNE+LYSSGNAPS
Sbjct: 178 KGLPRTSLNDIEELKTDRIGLRGRIEKKAAYLQELEEQFVGLQNLIQRNEQLYSSGNAPS 237

Query: 237 GGVALPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFKLHDDNSVLKAMKFCERQQSDD 296
           GGVALPFILVQTRPHATVEVEISEDMQLVHFDFNSTPF+LHDDN VLKAMKFCER Q DD
Sbjct: 238 GGVALPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERPQGDD 297

Query: 297 MAQSFPADDGEGSSMAGVYQPPQLLP-PPRANNSNRPPTSPPVPGILKARVKHEH 350
           +   FPA DGEGSSM G+YQ   L+P   R++   RPPTSPP+PGILKARVKHEH
Sbjct: 298 VTHDFPA-DGEGSSMPGMYQ--SLIPHSSRSSTLGRPPTSPPLPGILKARVKHEH 349

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438797|ref|XP_004137174.1| PREDICTED: transcription factor-like protein DPB-like [Cucumis sativus]

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 274/346 (79%), Positives = 300/346 (86%), Gaps = 12/346 (3%)

Query: 9   QEDGDRQQPAAKGGGATRSWGTTVSGQSVSTSGSVGSPS----QSMATPASDSTFLRLNH 64
           +ED D   P+  G        TT+SGQSVS SGSVGSPS    Q+MATPASD+TFLRLN+
Sbjct: 10  REDDDDDLPSGPGA-------TTISGQSVSMSGSVGSPSSRSEQTMATPASDNTFLRLNN 62

Query: 65  LDIHGDDAGSQGAVVGGKKKKRGQRAGGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVAD 124
           LDIHGD+AGSQG      KKKRGQRA GGDKSGRGLRQFSMKVCEKVESKGRTTYNEVAD
Sbjct: 63  LDIHGDEAGSQGPT-ANVKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVAD 121

Query: 125 ELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSL 184
           ELVAEFADP NS+A+PDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTS+
Sbjct: 122 ELVAEFADPGNSVASPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSV 181

Query: 185 NDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSSGNAPSGGVALPFI 244
           NDIEELKAERLGLRNRIEKK AYLQELE+Q+VGLQNLIQRNE+L++S NAPSGGV+LPFI
Sbjct: 182 NDIEELKAERLGLRNRIEKKAAYLQELEEQYVGLQNLIQRNEQLFNSENAPSGGVSLPFI 241

Query: 245 LVQTRPHATVEVEISEDMQLVHFDFNSTPFKLHDDNSVLKAMKFCERQQSDDMAQSFPAD 304
           LVQTRPHATVE+EISEDMQLVHFDFNSTPF+LHDDN VLKAMKFC R Q D+ AQ+F  D
Sbjct: 242 LVQTRPHATVEIEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCNRPQCDNTAQNFTPD 301

Query: 305 DGEGSSMAGVYQPPQLLPPPRANNSNRPPTSPPVPGILKARVKHEH 350
            GEGSSM+G+YQPP +  P  +N   R PTSPP+PGI+KARVKHEH
Sbjct: 302 GGEGSSMSGMYQPPHIPIPSLSNTPVRTPTSPPLPGIIKARVKHEH 347

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449476464|ref|XP_004154744.1| PREDICTED: transcription factor-like protein DPB-like [Cucumis sativus]

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 274/347 (78%), Positives = 300/347 (86%), Gaps = 13/347 (3%)

Query: 9   QEDGDRQQPAAKGGGATRSWGTTVSGQSVSTSGSVGSPS----QSMATPASDSTFLRLNH 64
           +ED D   P+  G        TT+SGQSVS SGSVGSPS    Q+MATPASD+TFLRLN+
Sbjct: 10  REDDDDDLPSGPGA-------TTISGQSVSMSGSVGSPSSRSEQTMATPASDNTFLRLNN 62

Query: 65  LDIHGDDAGSQGAVVGGKKKKRGQRAGGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVAD 124
           LDIHGD+AGSQG      KKKRGQRA GGDKSGRGLRQFSMKVCEKVESKGRTTYNEVAD
Sbjct: 63  LDIHGDEAGSQGPT-ANVKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVAD 121

Query: 125 ELVAEFADPSNSLATPDQQQ-YDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTS 183
           ELVAEFADP NS+A+PDQQQ YDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTS
Sbjct: 122 ELVAEFADPGNSVASPDQQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTS 181

Query: 184 LNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSSGNAPSGGVALPF 243
           +NDIEELKAERLGLRNRIEKK AYLQELE+Q+VGLQNLIQRNE+L++S NAPSGGV+LPF
Sbjct: 182 VNDIEELKAERLGLRNRIEKKAAYLQELEEQYVGLQNLIQRNEQLFNSENAPSGGVSLPF 241

Query: 244 ILVQTRPHATVEVEISEDMQLVHFDFNSTPFKLHDDNSVLKAMKFCERQQSDDMAQSFPA 303
           ILVQTRPHATVE+EISEDMQLVHFDFNSTPF+LHDDN VLKAMKFC R Q D+ AQ+F  
Sbjct: 242 ILVQTRPHATVEIEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCNRPQCDNTAQNFTP 301

Query: 304 DDGEGSSMAGVYQPPQLLPPPRANNSNRPPTSPPVPGILKARVKHEH 350
           D GEGSSM+G+YQPP +  P  +N   R PTSPP+PGI+KARVKHEH
Sbjct: 302 DGGEGSSMSGMYQPPHIPIPSLSNTPVRTPTSPPLPGIIKARVKHEH 348

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138754|ref|XP_002322893.1| transcription factor DP, E2 dimerization partner protein [Populus trichocarpa] gi|222867523|gb|EEF04654.1| transcription factor DP, E2 dimerization partner protein [Populus trichocarpa]

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 289/361 (80%), Positives = 308/361 (85%), Gaps = 17/361 (4%)

Query: 1   MVTGNNSHQEDGDRQQPAAKGGGATR-----SWGTTVSGQSVSTSGSVGSPS----QSMA 51
           MVTG   H EDGDR   +A   G        SW   VSGQSVSTSGSVGSPS     +MA
Sbjct: 1   MVTGG-GHLEDGDRHPSSAATRGGGGGATTGSW---VSGQSVSTSGSVGSPSSRSEHAMA 56

Query: 52  TPASDSTFLRLNHLDIHGDDAGSQGAVVGGKKKKRGQRAGGG-DKSGRGLRQFSMKVCEK 110
           TPASD+TFLRLNHLDIH DDA +Q A    KKKKRGQRA GG DKSGRGLRQFSMKVCEK
Sbjct: 57  TPASDNTFLRLNHLDIHADDAATQDAAAN-KKKKRGQRAAGGADKSGRGLRQFSMKVCEK 115

Query: 111 VESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170
           VESKG TTYNEVADELVAEFADPSNS++TPDQQQYDEKNIRRRVYDALNVLMA+DIISKD
Sbjct: 116 VESKGTTTYNEVADELVAEFADPSNSVSTPDQQQYDEKNIRRRVYDALNVLMALDIISKD 175

Query: 171 KKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYS 230
           KKEIQWKGLPRTSL+DIEELKAERLGLRNRIEKK AYLQELE+QF+GLQNLIQRNE+LYS
Sbjct: 176 KKEIQWKGLPRTSLSDIEELKAERLGLRNRIEKKAAYLQELEEQFMGLQNLIQRNEQLYS 235

Query: 231 SGNAPSGGVALPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFKLHDDNSVLKAMKFCE 290
           SGNAPSGGV+LPFILVQTRPHATVEVEISEDMQLVHFDFNSTPF+LHDDN VLKAMKFCE
Sbjct: 236 SGNAPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCE 295

Query: 291 RQQSDDMAQSFP-ADDGEGSSMAGVYQPPQLLPPPRANNSNRPPTSPPVPGILKARVKHE 349
           R QSD+MA   P AD GEGSSM+ +YQ PQ+   PR NN  R PTSPP+PGI+KARVKHE
Sbjct: 296 RHQSDNMAAPNPAADGGEGSSMSIMYQ-PQIRTSPRTNNPVRLPTSPPLPGIIKARVKHE 354

Query: 350 H 350
           H
Sbjct: 355 H 355

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|33338106|gb|AAQ13675.1|AF181998_1 transcription factor DP1 [Populus tremula x Populus tremuloides] gi|32187097|gb|AAP73785.1| DP1 [Populus tremula x Populus tremuloides]

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 285/359 (79%), Positives = 305/359 (84%), Gaps = 15/359 (4%)

Query: 1   MVTGNNSHQEDGDRQ-----QPAAKGGGATRSWGTTVSGQSVSTSGSVGSPS----QSMA 51
           MV G  +H EDGDR      +    GG  T SW   VSGQSVSTSGSVGSPS     +MA
Sbjct: 1   MVAGG-AHLEDGDRHPSSASRRGGGGGATTGSW---VSGQSVSTSGSVGSPSSRSEHAMA 56

Query: 52  TPASDSTFLRLNHLDIHGDDAGSQGAVVGGKKKKRGQRAGGGDKSGRGLRQFSMKVCEKV 111
           TPASDSTFLRLNHLDIH DDA +Q A    KKKKRGQRA G DKSGRGLRQFS+KVCEKV
Sbjct: 57  TPASDSTFLRLNHLDIHADDAATQDAAAN-KKKKRGQRAVGADKSGRGLRQFSIKVCEKV 115

Query: 112 ESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDK 171
           ESKG TTYNEVADELVAEFADPSNS++TPDQQQYDEKNIRRRVYDALNVLMA+DIISKDK
Sbjct: 116 ESKGTTTYNEVADELVAEFADPSNSVSTPDQQQYDEKNIRRRVYDALNVLMALDIISKDK 175

Query: 172 KEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSS 231
           KEIQWKGLPRTSL+DIEELK ERLGLRNR EKK AYLQELE+QFVGLQNLIQRNE+LYSS
Sbjct: 176 KEIQWKGLPRTSLSDIEELKVERLGLRNRFEKKAAYLQELEEQFVGLQNLIQRNEQLYSS 235

Query: 232 GNAPSGGVALPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFKLHDDNSVLKAMKFCER 291
           GNAPSGGV+LPFILVQTRPHATVEVEISEDMQLVHFDFNSTPF+LHDDN VLKAMKFCER
Sbjct: 236 GNAPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCER 295

Query: 292 QQSDDMAQSFPADDGEGSSMAGVYQPPQLLPPPRANNSNRPPTSPPVPGILKARVKHEH 350
            QSD MA + PAD GEGSSM+ +YQ PQ+L  P  N   R PTSPP+PGI+KARVK+EH
Sbjct: 296 PQSDGMAPNPPADGGEGSSMSSMYQ-PQILASPSTNTPVRHPTSPPLPGIIKARVKNEH 353

Source: Populus tremula x Populus tremuloides

Species: Populus tremula x Populus tremuloides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068777|ref|XP_002326197.1| transcription factor DP, E2 dimerization partner protein [Populus trichocarpa] gi|222833390|gb|EEE71867.1| transcription factor DP, E2 dimerization partner protein [Populus trichocarpa]

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 253/301 (84%), Positives = 270/301 (89%), Gaps = 2/301 (0%)

Query: 50  MATPASDSTFLRLNHLDIHGDDAGSQGAVVGGKKKKRGQRAGGGDKSGRGLRQFSMKVCE 109
           MATPASDSTFLRLNHLDIH D   +       KKKKRGQRA G DKSGRGLRQFS+KVCE
Sbjct: 1   MATPASDSTFLRLNHLDIHAD-DAATQDAAANKKKKRGQRAVGADKSGRGLRQFSIKVCE 59

Query: 110 KVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169
           KVESKG TTYNEVADELVAEFADPSNS++TPDQQQYDEKNIRRRVYDALNVLMA+DIISK
Sbjct: 60  KVESKGTTTYNEVADELVAEFADPSNSVSTPDQQQYDEKNIRRRVYDALNVLMALDIISK 119

Query: 170 DKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLY 229
           DKKEIQWKGLPRTSL+DIEELK ERLGLRNRIEKK AYLQELE+QFVGLQNLIQRNE+LY
Sbjct: 120 DKKEIQWKGLPRTSLSDIEELKVERLGLRNRIEKKAAYLQELEEQFVGLQNLIQRNEQLY 179

Query: 230 SSGNAPSGGVALPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFKLHDDNSVLKAMKFC 289
           SSGNAPSGGV+LPFILVQTRPHATVEVEISEDMQLVHFDFNSTPF+LHDDN VLKAMKFC
Sbjct: 180 SSGNAPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFC 239

Query: 290 ERQQSDDMAQSFPADDGEGSSMAGVYQPPQLLPPPRANNSNRPPTSPPVPGILKARVKHE 349
           ER QSDDMA + PAD GEGSSM+ +YQ PQ+L  P  N   R PTSPP+PGI+KARVK+E
Sbjct: 240 ERPQSDDMAPNPPADGGEGSSMSSMYQ-PQILASPSTNTPVRHPTSPPLPGIIKARVKNE 298

Query: 350 H 350
           H
Sbjct: 299 H 299

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538615|ref|XP_003537797.1| PREDICTED: transcription factor-like protein DPB-like [Glycine max]

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 266/326 (81%), Positives = 289/326 (88%), Gaps = 13/326 (3%)

Query: 29  GTTVSGQSVSTSGSVGSPS----QSMATPASDSTFLRLNHLDIHGDDAGSQGAVVGGKKK 84
           GTT+SGQS+STS SVGSPS    Q+MATPASDSTFLRLNHLDIHGDDAGSQG V   KKK
Sbjct: 21  GTTMSGQSMSTSRSVGSPSSRSEQTMATPASDSTFLRLNHLDIHGDDAGSQGTV--AKKK 78

Query: 85  KRGQRAGGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQ 144
           KRGQRA GGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADP N ++TPDQQQ
Sbjct: 79  KRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPINGVSTPDQQQ 138

Query: 145 YDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKK 204
           YDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSL+DIEELK+ERLGLRNRIEKK
Sbjct: 139 YDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLSDIEELKSERLGLRNRIEKK 198

Query: 205 TAYLQELEDQFVGLQNLIQRNERLYSSGNAPSGGVALPFILVQTRPHATVEVEISEDMQL 264
            AYLQELE+Q++GLQ LIQRNE+LYSSGNAP+GGV+LPFILVQTRPHATVEVEISEDMQL
Sbjct: 199 AAYLQELEEQYIGLQKLIQRNEQLYSSGNAPNGGVSLPFILVQTRPHATVEVEISEDMQL 258

Query: 265 VHFDFNSTPFKLHDDNSVLKAMKFCERQQSDDMAQSFPADDGEGSSMAGVYQPPQLLPPP 324
           VHFDFNSTPF+LHDDN VLKAMKFCER Q+D+   +   D GEGSS+         +P  
Sbjct: 259 VHFDFNSTPFELHDDNYVLKAMKFCERSQNDNTTDN-STDGGEGSSIYA------QVPTS 311

Query: 325 RANNSNRPPTSPPVPGILKARVKHEH 350
            +N  NRPP+SPP+PGILKARVK+EH
Sbjct: 312 VSNPPNRPPSSPPLPGILKARVKNEH 337

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497355|ref|XP_003517526.1| PREDICTED: transcription factor-like protein DPB-like [Glycine max]

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 263/326 (80%), Positives = 288/326 (88%), Gaps = 12/326 (3%)

Query: 29  GTTVSGQSVSTSGSVGSPS----QSMATPASDSTFLRLNHLDIHGDDAGSQGAVVGGKKK 84
           GTT+SGQS+STS S+GSPS    Q+MATPASDSTFLRLNHLDIHGDDAGSQGAV   KKK
Sbjct: 21  GTTISGQSMSTSRSLGSPSSRSEQTMATPASDSTFLRLNHLDIHGDDAGSQGAV-ASKKK 79

Query: 85  KRGQRAGGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQ 144
           KRGQRA GGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADP N ++TPDQQQ
Sbjct: 80  KRGQRAIGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPINGVSTPDQQQ 139

Query: 145 YDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKK 204
           YDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSL+D+EELK+ERLGLRNRIEKK
Sbjct: 140 YDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLSDMEELKSERLGLRNRIEKK 199

Query: 205 TAYLQELEDQFVGLQNLIQRNERLYSSGNAPSGGVALPFILVQTRPHATVEVEISEDMQL 264
            AYLQELE+Q++GLQ LIQRNE+LYSSGNAP+GGV+LPFILVQTRPHATVEVEISEDMQL
Sbjct: 200 AAYLQELEEQYIGLQKLIQRNEQLYSSGNAPNGGVSLPFILVQTRPHATVEVEISEDMQL 259

Query: 265 VHFDFNSTPFKLHDDNSVLKAMKFCERQQSDDMAQSFPADDGEGSSMAGVYQPPQLLPPP 324
           VHFDFNSTPF+LHDDN VLKAMK CE   +D+   + P D GEGSS+         +P  
Sbjct: 260 VHFDFNSTPFELHDDNYVLKAMKLCEGSHNDNTTDN-PTDGGEGSSIYA------QVPTS 312

Query: 325 RANNSNRPPTSPPVPGILKARVKHEH 350
            +N  NRPP+SPP+PGILKARVK+EH
Sbjct: 313 VSNPPNRPPSSPPLPGILKARVKNEH 338

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556914|ref|XP_002519490.1| Transcription factor Dp-1, putative [Ricinus communis] gi|223541353|gb|EEF42904.1| Transcription factor Dp-1, putative [Ricinus communis]

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 281/364 (77%), Positives = 304/364 (83%), Gaps = 18/364 (4%)

Query: 1   MVTGNNSHQEDGDRQQPA--AKGGGATRSWG-TTVSG-QSVSTSGSVGSPS----QSMAT 52
           MVTG  SHQEDGD+   A  +KGGGA RSWG TTVSG QSVSTSGSVGSPS    Q+MAT
Sbjct: 1   MVTGG-SHQEDGDKNLAATVSKGGGAARSWGNTTVSGGQSVSTSGSVGSPSSRSEQAMAT 59

Query: 53  PASDSTFLRLNHLDIHGDDAGSQGAVVGGKKKKRGQRAGGGDKSGRGLRQFSMKVCEKVE 112
           PASDSTFLRLNHLDIH DDA +Q A    KKKKRGQRA G DKSGRGLRQFSMKVCEKVE
Sbjct: 60  PASDSTFLRLNHLDIHADDAATQDAAAN-KKKKRGQRAVGADKSGRGLRQFSMKVCEKVE 118

Query: 113 SKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKK 172
           SKG TTYNEVADELVAEFADP NS+++PDQQQYDEKNIRRRVYDALNVLMA+DIISKDKK
Sbjct: 119 SKGTTTYNEVADELVAEFADPGNSVSSPDQQQYDEKNIRRRVYDALNVLMALDIISKDKK 178

Query: 173 EIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELED-----QFVGLQNLIQRNER 227
           EIQWKGLPRTSL+DIEELKAERLGLR+RI  K      + D     +++GLQNLI RNE+
Sbjct: 179 EIQWKGLPRTSLSDIEELKAERLGLRSRIXXKNWRNNWIVDFLSLMKYIGLQNLINRNEQ 238

Query: 228 LYSSGNAPSGGVALPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFKLHDDNSVLKAMK 287
           LY+SGNAPSGGV+LPFILVQTRPHATVEVEISEDMQLVHFDFNSTPF+LHDDN VLKAMK
Sbjct: 239 LYNSGNAPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMK 298

Query: 288 FCERQQSDDMAQSFPADDGEGSSMAGVYQPPQLLPPPRANNSNRP-PTSPPVPGILKARV 346
           FCER QSD +A +   D GEGSSM+ VYQ  Q +  P  N   RP PTSPP+PGILKARV
Sbjct: 299 FCERPQSDSVAPNLANDGGEGSSMSHVYQ--QQILSPGTNTPVRPSPTSPPIPGILKARV 356

Query: 347 KHEH 350
           KHEH
Sbjct: 357 KHEH 360

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248226|ref|NP_001240098.1| uncharacterized protein LOC100800599 [Glycine max] gi|255646235|gb|ACU23602.1| unknown [Glycine max]

 Score =  493 bits (1269), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 247/319 (77%), Positives = 269/319 (84%), Gaps = 13/319 (4%)

Query: 33  SGQSVSTSGSVGSPSQSMATPASDSTFLRLNHLDIHGDDAGSQGAVVGGKKKKRG-QRAG 91
           SGQS ST+ S+         P  D T L+LNHLD+H DDAGS  ++  GKKKKRG QRA 
Sbjct: 13  SGQSASTNNSL--------PPPVDKTILKLNHLDVHADDAGSHASLASGKKKKRGGQRAV 64

Query: 92  GGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIR 151
           G DKSGRGLRQFSMKVCEKVES+GRTTYNEVADELVAEF++PSNS   PDQQQYDEKNIR
Sbjct: 65  GPDKSGRGLRQFSMKVCEKVESRGRTTYNEVADELVAEFSEPSNSELPPDQQQYDEKNIR 124

Query: 152 RRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQEL 211
           RRVYDALNVLMAMDIISKDKKEIQW+GLPRT++NDIEELK ERLGLRNRIEKKTAYLQEL
Sbjct: 125 RRVYDALNVLMAMDIISKDKKEIQWRGLPRTTVNDIEELKTERLGLRNRIEKKTAYLQEL 184

Query: 212 EDQFVGLQNLIQRNERLYSSGNAPSGGVALPFILVQTRPHATVEVEISEDMQLVHFDFNS 271
           E+QF+GLQNLIQRNE+LYSSGN PSGGV+LPFILVQTRPHATVEVEISEDMQLVHFDFNS
Sbjct: 185 EEQFIGLQNLIQRNEQLYSSGNPPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNS 244

Query: 272 TPFKLHDDNSVLKAMKFCERQQSDDMAQSFPADDGEGSSMAGVYQPPQLLPPPRANNSNR 331
           TPF+LHDDN VLKAMKF ER Q D+M  +   D GE SSM+G+ QP     P   N SNR
Sbjct: 245 TPFELHDDNYVLKAMKFGERPQDDNMTHNL-TDGGEVSSMSGLCQPQT---PTNLNVSNR 300

Query: 332 PPTSPPVPGILKARVKHEH 350
           PPTSPP+PGILKARVK EH
Sbjct: 301 PPTSPPLPGILKARVKQEH 319

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	350
TAIR|locus:1005716177	385	DPB [Arabidopsis thaliana (tax	0.822	0.748	0.688	1.3e-100
TAIR|locus:2181788	292	DPA [Arabidopsis thaliana (tax	0.58	0.695	0.529	1.4e-55
UNIPROTKB|F1P3E8	411	TFDP1 "Uncharacterized protein	0.545	0.464	0.525	3.8e-46
UNIPROTKB|F1Q0Q6	447	TFDP2 "Uncharacterized protein	0.545	0.427	0.520	3.8e-46
UNIPROTKB|F8W6Z7	370	TFDP2 "Transcription factor Dp	0.545	0.516	0.520	3.8e-46
UNIPROTKB|F1Q0W2	415	TFDP1 "Uncharacterized protein	0.545	0.460	0.520	1.6e-45
UNIPROTKB|B4DLQ9	311	TFDP1 "Transcription factor Dp	0.545	0.614	0.520	1.6e-45
UNIPROTKB|F5H452	381	TFDP1 "Transcription factor Dp	0.545	0.501	0.520	1.6e-45
UNIPROTKB|Q14186	410	TFDP1 "Transcription factor Dp	0.545	0.465	0.520	1.6e-45
UNIPROTKB|F1RN38	448	F1RN38 "Uncharacterized protei	0.545	0.426	0.520	1.6e-45

TAIR|locus:1005716177 DPB [Arabidopsis thaliana (taxid:3702)]

 Score = 998 (356.4 bits), Expect = 1.3e-100, P = 1.3e-100
 Identities = 199/289 (68%), Positives = 219/289 (75%)

Query:     3 TGNNSHQEDGDRQQPAAKGGGATRXXXXXXXXXXXXXXXXXXXXXXXMATPASDSTFLRL 62
             + +N H+ + +   P+ +  G                          + T  SD+TF RL
Sbjct:     8 SNHNHHESNNNNNNPSTRSWGTAVSGQSVSTSGSMGSPSSRSEQTITVVTSTSDTTFQRL 67

Query:    63 NHLDIHGDDAGSXXXXXXXXXXXXXXXXXXXDKSGRGLRQFSMKVCEKVESKGRTTYNEV 122
             N+LDI GDDAGS                   DK+GRGLRQFSMKVCEKVESKGRTTYNEV
Sbjct:    68 NNLDIQGDDAGSQGASGVKKKKRGQRAAGP-DKTGRGLRQFSMKVCEKVESKGRTTYNEV 126

Query:   123 ADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRT 182
             ADELVAEFA P+N   +PDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQW+GLPRT
Sbjct:   127 ADELVAEFALPNNDGTSPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWRGLPRT 186

Query:   183 SLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSSGNAPSGGVALP 242
             SL+DIEELK ERL LRNRIEKKTAY QELE+Q+VGLQNLIQRNE LYSSGNAPSGGVALP
Sbjct:   187 SLSDIEELKNERLSLRNRIEKKTAYSQELEEQYVGLQNLIQRNEHLYSSGNAPSGGVALP 246

Query:   243 FILVQTRPHATVEVEISEDMQLVHFDFNSTPFKLHDDNSVLKAMKFCER 291
             FILVQTRPHATVEVEISEDMQLVHFDFNSTPF+LHDDN VLK MKFC++
Sbjct:   247 FILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNFVLKTMKFCDQ 295

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0042023 "DNA endoreduplication" evidence=RCA;IMP

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0051302 "regulation of cell division" evidence=RCA

TAIR|locus:2181788 DPA [Arabidopsis thaliana (taxid:3702)]

 Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
 Identities = 109/206 (52%), Positives = 152/206 (73%)

Query:    96 SGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATP-DQQQYDEKNIRRRV 154
             SG GLRQFS+ VC+K+E+K  TTY EVADE++++FA    +   P ++ +Y+EKNIRRRV
Sbjct:    50 SGGGLRQFSVMVCQKLEAKKITTYKEVADEIISDFATIKQNAEKPLNENEYNEKNIRRRV 109

Query:   155 YDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELEDQ 214
             YDALNV MA+DII++DKKEI+WKGLP T   D+EE+K +R  + + ++KK A+L+EL ++
Sbjct:   110 YDALNVFMALDIIARDKKEIRWKGLPITCKKDVEEVKMDRNKVMSSVQKKAAFLKELREK 169

Query:   215 FVGLQNLIQRNERLYSSGNAPSGGVALPFILVQTRPHATVEVEISEDMQLVHFDFNSTPF 274
                L++L+ RN+ +      P+ G  LPFIL++T PHA VE+EISEDMQLVH DFNSTPF
Sbjct:   170 VSSLESLMSRNQEMVVKTQGPAEGFTLPFILLETNPHAVVEIEISEDMQLVHLDFNSTPF 229

Query:   275 KLHDDNSVLKAMKFCERQQSDDMAQS 300
              +HDD  +LK M+  E++Q  +   S
Sbjct:   230 SVHDDAYILKLMQ--EQKQEQNRVSS 253

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005667 "transcription factor complex" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0051302 "regulation of cell division" evidence=RCA

UNIPROTKB|F1P3E8 TFDP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 103/196 (52%), Positives = 134/196 (68%)

Query:    94 DKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRR 153
             +KSG GLR FSMKVCEKV+ KG T+YNEVADELVAEF  P + ++ P++  YD+KNIRRR
Sbjct:   110 EKSGTGLRHFSMKVCEKVQRKGTTSYNEVADELVAEFTTPDDHIS-PNESAYDQKNIRRR 168

Query:   154 VYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELED 213
             VYDALNVLMAM+IISK+KKEI+W GLP  S  + + L+ E+     RI++K + LQEL  
Sbjct:   169 VYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQNLEVEKQRRLERIKQKQSQLQELIL 228

Query:   214 QFVGLQNLIQRNERLYSSGNAP--SGGVA-LPFILVQTRPHATVEVEISEDMQLVHFDFN 270
             Q +  +NL+QRN +     N P  S  V  LPFI+V T     ++  IS D     F+F+
Sbjct:   229 QQIAFKNLVQRNRQAEQQANRPPPSNSVIHLPFIIVNTSKKTVIDCSISNDKFEYLFNFD 288

Query:   271 STPFKLHDDNSVLKAM 286
             +T F++HDD  VLK M
Sbjct:   289 NT-FEIHDDIEVLKRM 303

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0000084 "S phase of mitotic cell cycle" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0008544 "epidermis development" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|F1Q0Q6 TFDP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 102/196 (52%), Positives = 134/196 (68%)

Query:    94 DKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRR 153
             DK+G+GLR FSMKVCEKV+ KG T+YNEVADELV+EF + +N LA  D Q YD+KNIRRR
Sbjct:   126 DKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHLAA-DSQAYDQKNIRRR 184

Query:   154 VYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELED 213
             VYDALNVLMAM+IISK+KKEI+W GLP  S  + + L+ E+     RI++K A LQEL  
Sbjct:   185 VYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQNLEIEKQRRIERIKQKRAQLQELLL 244

Query:   214 QFVGLQNLIQRNERLYSSGNAP---SGGVALPFILVQTRPHATVEVEISEDMQLVHFDFN 270
             Q +  +NL+QRN +       P   +  + LPFI++ T     ++  IS D     F+F+
Sbjct:   245 QQIAFKNLVQRNRQNEQQNQGPPALNSTIQLPFIIINTSRKTVIDCSISSDKFEYLFNFD 304

Query:   271 STPFKLHDDNSVLKAM 286
             +T F++HDD  VLK M
Sbjct:   305 NT-FEIHDDIEVLKRM 319

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

UNIPROTKB|F8W6Z7 TFDP2 "Transcription factor Dp-2" [Homo sapiens (taxid:9606)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 102/196 (52%), Positives = 134/196 (68%)

Query:    94 DKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRR 153
             DK+G+GLR FSMKVCEKV+ KG T+YNEVADELV+EF + +N LA  D Q YD+KNIRRR
Sbjct:    49 DKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHLAA-DSQAYDQKNIRRR 107

Query:   154 VYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELED 213
             VYDALNVLMAM+IISK+KKEI+W GLP  S  + + L+ E+     RI++K A LQEL  
Sbjct:   108 VYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQNLEIEKQRRIERIKQKRAQLQELLL 167

Query:   214 QFVGLQNLIQRNERLYSSGNAP---SGGVALPFILVQTRPHATVEVEISEDMQLVHFDFN 270
             Q +  +NL+QRN +       P   +  + LPFI++ T     ++  IS D     F+F+
Sbjct:   168 QQIAFKNLVQRNRQNEQQNQGPPALNSTIQLPFIIINTSRKTVIDCSISSDKFEYLFNFD 227

Query:   271 STPFKLHDDNSVLKAM 286
             +T F++HDD  VLK M
Sbjct:   228 NT-FEIHDDIEVLKRM 242

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|F1Q0W2 TFDP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 102/196 (52%), Positives = 135/196 (68%)

Query:    94 DKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRR 153
             +K+G+GLR FSMKVCEKV+ KG T+YNEVADELVAEF+   N +  P++  YD+KNIRRR
Sbjct:   115 EKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVAEFSAADNHIL-PNESAYDQKNIRRR 173

Query:   154 VYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELED 213
             VYDALNVLMAM+IISK+KKEI+W GLP  S  + + L+ ER     RI++K + LQEL  
Sbjct:   174 VYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQNLEVERQRRLERIKQKQSQLQELIL 233

Query:   214 QFVGLQNLIQRN---ERLYSSGNAPSGGVALPFILVQTRPHATVEVEISEDMQLVHFDFN 270
             Q +  +NL+QRN   E+  S    P+  + LPFI+V T     ++  IS D     F+F+
Sbjct:   234 QQIAFKNLVQRNRQAEQQASRPPPPNSVIHLPFIIVNTSKKTVIDCSISNDKFEYLFNFD 293

Query:   271 STPFKLHDDNSVLKAM 286
             +T F++HDD  VLK M
Sbjct:   294 NT-FEIHDDIEVLKRM 308

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

UNIPROTKB|B4DLQ9 TFDP1 "Transcription factor Dp-1" [Homo sapiens (taxid:9606)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 102/196 (52%), Positives = 135/196 (68%)

Query:    94 DKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRR 153
             +K+G+GLR FSMKVCEKV+ KG T+YNEVADELVAEF+   N +  P++  YD+KNIRRR
Sbjct:    15 EKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVAEFSAADNHIL-PNESAYDQKNIRRR 73

Query:   154 VYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELED 213
             VYDALNVLMAM+IISK+KKEI+W GLP  S  + + L+ ER     RI++K + LQEL  
Sbjct:    74 VYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQNLEVERQRRLERIKQKQSQLQELIL 133

Query:   214 QFVGLQNLIQRN---ERLYSSGNAPSGGVALPFILVQTRPHATVEVEISEDMQLVHFDFN 270
             Q +  +NL+QRN   E+  S    P+  + LPFI+V T     ++  IS D     F+F+
Sbjct:   134 QQIAFKNLVQRNRHAEQQASRPPPPNSVIHLPFIIVNTSKKTVIDCSISNDKFEYLFNFD 193

Query:   271 STPFKLHDDNSVLKAM 286
             +T F++HDD  VLK M
Sbjct:   194 NT-FEIHDDIEVLKRM 208

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|F5H452 TFDP1 "Transcription factor Dp-1" [Homo sapiens (taxid:9606)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 102/196 (52%), Positives = 135/196 (68%)

Query:    94 DKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRR 153
             +K+G+GLR FSMKVCEKV+ KG T+YNEVADELVAEF+   N +  P++  YD+KNIRRR
Sbjct:    15 EKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVAEFSAADNHIL-PNESAYDQKNIRRR 73

Query:   154 VYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELED 213
             VYDALNVLMAM+IISK+KKEI+W GLP  S  + + L+ ER     RI++K + LQEL  
Sbjct:    74 VYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQNLEVERQRRLERIKQKQSQLQELIL 133

Query:   214 QFVGLQNLIQRN---ERLYSSGNAPSGGVALPFILVQTRPHATVEVEISEDMQLVHFDFN 270
             Q +  +NL+QRN   E+  S    P+  + LPFI+V T     ++  IS D     F+F+
Sbjct:   134 QQIAFKNLVQRNRHAEQQASRPPPPNSVIHLPFIIVNTSKKTVIDCSISNDKFEYLFNFD 193

Query:   271 STPFKLHDDNSVLKAM 286
             +T F++HDD  VLK M
Sbjct:   194 NT-FEIHDDIEVLKRM 208

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|Q14186 TFDP1 "Transcription factor Dp-1" [Homo sapiens (taxid:9606)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 102/196 (52%), Positives = 135/196 (68%)

Query:    94 DKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRR 153
             +K+G+GLR FSMKVCEKV+ KG T+YNEVADELVAEF+   N +  P++  YD+KNIRRR
Sbjct:   110 EKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVAEFSAADNHIL-PNESAYDQKNIRRR 168

Query:   154 VYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELED 213
             VYDALNVLMAM+IISK+KKEI+W GLP  S  + + L+ ER     RI++K + LQEL  
Sbjct:   169 VYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQNLEVERQRRLERIKQKQSQLQELIL 228

Query:   214 QFVGLQNLIQRN---ERLYSSGNAPSGGVALPFILVQTRPHATVEVEISEDMQLVHFDFN 270
             Q +  +NL+QRN   E+  S    P+  + LPFI+V T     ++  IS D     F+F+
Sbjct:   229 QQIAFKNLVQRNRHAEQQASRPPPPNSVIHLPFIIVNTSKKTVIDCSISNDKFEYLFNFD 288

Query:   271 STPFKLHDDNSVLKAM 286
             +T F++HDD  VLK M
Sbjct:   289 NT-FEIHDDIEVLKRM 303

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IPI

GO:0019904 "protein domain specific binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0003713 "transcription coactivator activity" evidence=TAS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=TAS

GO:0008283 "cell proliferation" evidence=TAS

GO:0000080 "G1 phase of mitotic cell cycle" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006351 "transcription, DNA-dependent" evidence=TAS

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=TAS

GO:0007179 "transforming growth factor beta receptor signaling pathway" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=TAS

UNIPROTKB|F1RN38 F1RN38 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 102/196 (52%), Positives = 134/196 (68%)

Query:    94 DKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRR 153
             +K+G+GLR FSMKVCEKV+ KG T+YNEVADELVAEF+   N +  P +  YD+KNIRRR
Sbjct:   128 EKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVAEFSAADNHIL-PSESAYDQKNIRRR 186

Query:   154 VYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELED 213
             VYDALNVLMAM+IISK+KKEI+W GLP  S  + + L+ ER     RI++K + LQEL  
Sbjct:   187 VYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQNLEVERQRRLERIKQKQSQLQELIL 246

Query:   214 QFVGLQNLIQRN---ERLYSSGNAPSGGVALPFILVQTRPHATVEVEISEDMQLVHFDFN 270
             Q +  +NL+QRN   E+  S    P+  + LPFI+V T     ++  IS D     F+F+
Sbjct:   247 QQIAFKNLVQRNRQAEQQASRPPPPNSVIHLPFIIVNTSKRTVIDCSISNDKFEYLFNFD 306

Query:   271 STPFKLHDDNSVLKAM 286
             +T F++HDD  VLK M
Sbjct:   307 NT-FEIHDDIEVLKRM 321

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0008544 "epidermis development" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000084 "S phase of mitotic cell cycle" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FNY2	DPB_ARATH	No assigned EC number	0.6839	0.9228	0.8389	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	DPb	transcription factor DP, E2 dimerization partner protein (300 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	E2Fc	transcription factor E2F (476 aa)					•	•	•		0.745
	CDKD	hypothetical protein (416 aa)							•		0.510
	CKS2	SubName- Full=Putative uncharacterized protein; (83 aa)							•		0.510
	CYCD7	SubName- Full=D7-type cyclin; (356 aa)							•		0.508
	KRP-7	SubName- Full=Putative uncharacterized protein; (206 aa)							•		0.502
	E2Fa2-2	transcription factor E2F (455 aa)					•	•	•		0.490
	E2Fa1-2	transcription factor E2F (432 aa)					•	•	•		0.485
	E2Fa1-1	transcription factor E2F (441 aa)					•	•	•		0.482
	RBL901	SubName- Full=Putative uncharacterized protein;; Regulator of biological processes that recruit [...] (965 aa)					•		•		0.405

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	350
pfam08781	141	pfam08781, DP, Transcription factor DP	2e-57
pfam02319	67	pfam02319, E2F_TDP, E2F/DP family winged-helix DNA	3e-20

>gnl|CDD|192151 pfam08781, DP, Transcription factor DP

 Score =  182 bits (464), Expect = 2e-57
 Identities = 63/163 (38%), Positives = 77/163 (47%), Gaps = 22/163 (13%)

Query: 185 NDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSSGNAPSGGVALPFI 244
            +IE+L+ ER     RIE+K A LQEL  Q V L+NL+QRN+ L SSGN PS G+ LPFI
Sbjct: 1   QEIEKLEEERQKRIERIEQKQAQLQELILQQVALKNLVQRNQELESSGNVPSSGIQLPFI 60

Query: 245 LVQTRPHATVEVEISEDMQLVHFDFNSTPFKLHDDNSVLKAMKFCERQQSDDMAQSFPAD 304
           LV T   A ++ EISED    HFDFNST F++HDD  VLK M      +S   +      
Sbjct: 61  LVNTSKKAVIDCEISEDKSEYHFDFNST-FEIHDDIEVLKRMGLALGLESGPCSAENLKT 119

Query: 305 DGEGSSMAGVYQPPQLLPPPRANNSNRPPTSPPVPGILKARVK 347
                                          P V  I K    
Sbjct: 120 AKSLVP---------------------KALEPYVTEIAKGTSG 141

DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer and negatively regulates the G1-S transition. Length = 141

>gnl|CDD|202203 pfam02319, E2F_TDP, E2F/DP family winged-helix DNA-binding domain

 Score = 83.0 bits (206), Expect = 3e-20
 Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 25/88 (28%)

Query: 95  KSGRGLRQFSMK---VCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIR 151
           +  + L   + K   +CEK    G T  NE A EL                   D K  +
Sbjct: 1   RKEKSLGLLTQKFLKLCEKSP-DGITDLNEAAKEL-------------------DVK-QK 39

Query: 152 RRVYDALNVLMAMDIISK-DKKEIQWKG 178
           RR+YD  NVL  + +I K  K EI+W G
Sbjct: 40  RRIYDITNVLEGIGLIEKKSKNEIRWIG 67

This family contains the transcription factor E2F and its dimerisation partners TDP1 and TDP2, which stimulate E2F-dependent transcription. E2F binds to DNA as a homodimer or as a heterodimer in association with TDP1/2, the heterodimer having increased binding efficiency. The crystal structure of an E2F4-DP2-DNA complex shows that the DNA-binding domains of the E2F and DP proteins both have a fold related to the winged-helix DNA-binding motif. Recognition of the central c/gGCGCg/c sequence of the consensus DNA-binding site is symmetric, and amino acids that contact these bases are conserved among all known E2F and DP proteins. Length = 67

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	350
KOG2829	326	consensus E2F-like protein [Transcription]	100.0
KOG2577	354	consensus Transcription factor E2F/dimerization pa	100.0
PF08781	142	DP: Transcription factor DP; InterPro: IPR014889 D	99.97
PF02319	71	E2F_TDP: E2F/DP family winged-helix DNA-binding do	99.74
KOG2578	388	consensus Transcription factor E2F/dimerization pa	98.79
KOG2578	388	consensus Transcription factor E2F/dimerization pa	96.75
PF01978	68	TrmB: Sugar-specific transcriptional regulator Trm	91.5
PF05402	68	PqqD: Coenzyme PQQ synthesis protein D (PqqD); Int	85.38
COG1378	247	Predicted transcriptional regulators [Transcriptio	84.22

>KOG2829 consensus E2F-like protein [Transcription]

Probab=100.00  E-value=5.2e-66  Score=491.21  Aligned_cols=203  Identities=58%  Similarity=0.845  Sum_probs=193.9

Q ss_pred             ccccCccchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCC-CCCCCChhhhhccccchhhhhhhhhhhhccchhcCC
Q 018827           93 GDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSN-SLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDK  171 (350)
Q Consensus        93 ~~k~~~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~-~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeKsK  171 (350)
                      ++++++||||||++|||||++||.|||||||||||++|..+++ ....++++.||+|||||||||||||||||+||.|+|
T Consensus        39 s~k~g~gLRhfs~kVCeKve~Kg~TtYneVADelVaef~~~n~~~~i~~n~~~yd~KNIRRRVYDALNVlmAmnIIsKdK  118 (326)
T KOG2829|consen   39 SDKAGGGLRHFSMKVCEKVERKGTTTYNEVADELVAEFAGANNYSHICPNEQEYDQKNIRRRVYDALNVLMAMNIISKDK  118 (326)
T ss_pred             CCCCCcchhhhhHHHHHHHHhcCCccHHHHHHHHHHHHhccccccccCccccccchHHHHHHHHHHHHHHHHHHHHhccc
Confidence            5889999999999999999999999999999999999998876 245678999999999999999999999999999999


Q ss_pred             CceeecCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccceEEEEcCCC
Q 018827          172 KEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSSGNAPSGGVALPFILVQTRPH  251 (350)
Q Consensus       172 k~IqW~G~~~~s~~~~~~Lk~El~~L~e~I~~K~~~LqEL~~q~~aLknLierNk~ly~s~~~~~e~i~LPfIaVkAP~~  251 (350)
                      |+|+|+|+|.++.+++++|++|..+++++|++|+++|+||+.|+.+|++|++||+.++..+..|.+.++||||+|.|.++
T Consensus       119 KEIrW~GLP~~ss~dv~~le~Er~k~~erI~kK~a~lqEl~~q~~~fknLV~RN~~~e~~~~~P~~~i~LPFiiinT~k~  198 (326)
T KOG2829|consen  119 KEIRWIGLPATSSQDVSELEEERKKRMERIKKKAAQLQELIEQVSAFKNLVQRNRHAESQGQPPSENIHLPFIIINTSKK  198 (326)
T ss_pred             ceeeeeccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCcccccceEEEecCCC
Confidence            99999999999999999999999999999999999999999999999999999999998778888889999999999999


Q ss_pred             cEEEeccCCCcEEEEEEeCCCCeEEecChhhhhhhccc-cccCCCC
Q 018827          252 ATVEVEISEDMQLVHFDFNSTPFKLHDDNSVLKAMKFC-ERQQSDD  296 (350)
Q Consensus       252 T~LEVp~peD~~qv~fks~~gPieV~DD~~iLK~m~~~-~~~~~~~  296 (350)
                      |+|+|++++|+++|||+|++ +|+||||++|||+|+++ +.+++.|
T Consensus       199 a~IeceiseDks~~~F~Fnk-tFevHDD~eILK~m~~~~~le~~~~  243 (326)
T KOG2829|consen  199 AVIECEISEDKSEYLFKFNK-TFEVHDDIEILKRMGENCGLEQGNC  243 (326)
T ss_pred             ceEEEEecccceeeeeecCC-ceeeccHHHHHHHHHhhcccccCCC
Confidence            99999999999999999998 59999999999999994 8888888

>KOG2577 consensus Transcription factor E2F/dimerization partner (TDP) [Transcription]

Probab=100.00  E-value=6.1e-33  Score=271.55  Aligned_cols=157  Identities=26%  Similarity=0.352  Sum_probs=126.3

Q ss_pred             cccCccchhhHHHHHHHHHh--cCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc-C
Q 018827           94 DKSGRGLRQFSMKVCEKVES--KGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK-D  170 (350)
Q Consensus        94 ~k~~~GLR~fS~KVcekVk~--kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK-s  170 (350)
                      -+..++|-.+++||.++|++  -|+..+|++|+.|-                     ++|||||||||||||||||+| +
T Consensus        67 ~R~d~SLglLTkKFv~Llq~s~dGvldLn~aA~~L~---------------------VqKRRIYDITNVLEGI~LIeKks  125 (354)
T KOG2577|consen   67 TRSDTSLGLLTKKFVDLLQESPDGVLDLNKAAEVLN---------------------VQKRRIYDITNVLEGIGLIEKKS  125 (354)
T ss_pred             ccchhhHHHHHHHHHHHHHhCCCceeeHHHHHHHhc---------------------cccceeeehhhhhhcccceeecc
Confidence            34557899999999999999  47999999999984                     899999999999999999999 9


Q ss_pred             CCceeecCCCCCC----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-hhh------cCCCCCC
Q 018827          171 KKEIQWKGLPRTS----LNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQR--NER-LYS------SGNAPSG  237 (350)
Q Consensus       171 Kk~IqW~G~~~~s----~~~~~~Lk~El~~L~e~I~~K~~~LqEL~~q~~aLknLier--Nk~-ly~------s~~~~~e  237 (350)
                      ||+|||+|.+.+.    ..+++.|++|+++|....+...+.+..+   +..|++|.++  |.. .|+      .+..|.+
T Consensus       126 KN~IqW~G~~~~~~~~~~e~~~~l~~e~~~L~~~E~~LD~~i~~~---q~~L~~lted~~n~~laYVT~eDI~~i~~f~~  202 (354)
T KOG2577|consen  126 KNNIQWIGGDFNSTGGVPERLNGLEAEVEDLSQEEDDLDQLIRDC---QQNLRLLTEDVENRRLAYVTYEDIRSIPGFDE  202 (354)
T ss_pred             ccceeeecCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhcchhcccceeeeHHHHhhccccCC
Confidence            9999999998764    3556667777777655443333332222   3356666664  443 365      2456899


Q ss_pred             CcccceEEEEcCCCcEEEeccC-CCcEEEEEEeCCCCeEEe
Q 018827          238 GVALPFILVQTRPHATVEVEIS-EDMQLVHFDFNSTPFKLH  277 (350)
Q Consensus       238 ~i~LPfIaVkAP~~T~LEVp~p-eD~~qv~fks~~gPieV~  277 (350)
                      +|   +|+||||++|+||||++ +++++|+|++++|||+||
T Consensus       203 q~---vi~vkap~et~levp~~~~~~~~i~L~s~~GpI~v~  240 (354)
T KOG2577|consen  203 QT---VIAVKAPPETRLEVPDPDEDRYQIRLKSNQGPIDVY  240 (354)
T ss_pred             ce---EEEEecCCcceEecccCCCCceEEEeccCCCceeEE
Confidence            99   99999999999999999 778999999999999998

>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression

Probab=99.97  E-value=7.7e-32  Score=236.13  Aligned_cols=125  Identities=48%  Similarity=0.625  Sum_probs=103.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccceEEEEcCCCcEEEeccCCCcEE
Q 018827          185 NDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSSGNAPSGGVALPFILVQTRPHATVEVEISEDMQL  264 (350)
Q Consensus       185 ~~~~~Lk~El~~L~e~I~~K~~~LqEL~~q~~aLknLierNk~ly~s~~~~~e~i~LPfIaVkAP~~T~LEVp~peD~~q  264 (350)
                      ++|++|++|+.+++++|++|+++|+||+.|+++|+||++||+.++..+..|.+.|+||||+|+|.++|+|+|++++|+.+
T Consensus         1 q~~~~Le~ek~~~~~rI~~K~~~LqEL~~Q~va~knLv~RN~~~~~~~~~p~~~i~LPFIlV~T~~~a~I~ceiS~D~~~   80 (142)
T PF08781_consen    1 QECEELEEEKQRRRERIKKKKEQLQELILQQVAFKNLVQRNRQLEQSGNAPSSGIQLPFILVNTSKKAVIECEISEDKSE   80 (142)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSS--GEEESS-EEEEEESS--EEEEE-TTSSE
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeeecCEEEEEecCCcEEEEEEcCCccE
Confidence            47899999999999999999999999999999999999999999988777789999999999999999999999999999


Q ss_pred             EEEEeCCCCeEEecChhhhhhhccccccCCCCCccCCCCCCCCCC
Q 018827          265 VHFDFNSTPFKLHDDNSVLKAMKFCERQQSDDMAQSFPADDGEGS  309 (350)
Q Consensus       265 v~fks~~gPieV~DD~~iLK~m~~~~~~~~~~~~~~~~~~~~~~s  309 (350)
                      |||+|++.||+||||++|||+|||+...+.+..+.++...+...+
T Consensus        81 ~~F~Fn~~pFeIhDD~eVLK~m~~~~~~~~~~~~~~~~~~~~s~~  125 (142)
T PF08781_consen   81 YHFDFNSTPFEIHDDIEVLKRMGLAFGLESGSCTPEDLAKAKSLV  125 (142)
T ss_dssp             EEEEESS--EEEEEHHHHHHHTTTTTTGGGT---HHHHHHHHHTS
T ss_pred             EEEEcCCCceeeechHHHHHHHHhhcCCCCCCCCccchhcccccC
Confidence            999999988999999999999999766554433777766555443

The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.

>PF02319 E2F_TDP: E2F/DP family winged-helix DNA-binding domain; InterPro: IPR003316 The mammalian transcription factor E2F plays an important role in regulating the expression of genes that are required for passage through the cell cycle

Probab=99.74  E-value=9.1e-19  Score=136.70  Aligned_cols=67  Identities=36%  Similarity=0.644  Sum_probs=58.1

Q ss_pred             cCccchhhHHHHHHHHHh--cCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc-CCC
Q 018827           96 SGRGLRQFSMKVCEKVES--KGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK-DKK  172 (350)
Q Consensus        96 ~~~GLR~fS~KVcekVk~--kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK-sKk  172 (350)
                      ..+||..++.+|.+.+..  .+.+++++||++|+.+                +.|++|||||||+|||+|+|||+| +|+
T Consensus         2 ~~~sL~~lt~~fi~~~~~~~~~~i~l~~ia~~l~~~----------------~~k~~~RRlYDI~NVLealgli~K~~k~   65 (71)
T PF02319_consen    2 KEKSLKLLTQRFIQLFESSPDKSISLNEIADKLISE----------------NVKTQRRRLYDIINVLEALGLIEKQSKN   65 (71)
T ss_dssp             TTTHHHHHHHHHHHHHHHCCCTEEEHHHHHHHCHHH----------------CCHHHCHHHHHHHHHHHHCTSEEEEETT
T ss_pred             CcCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHccc----------------ccccccchhhHHHHHHHHhCceeecCCC
Confidence            568999999997776664  4899999999999976                346899999999999999999999 999


Q ss_pred             ceeecC
Q 018827          173 EIQWKG  178 (350)
Q Consensus       173 ~IqW~G  178 (350)
                      .|+|.|
T Consensus        66 ~~~W~G   71 (71)
T PF02319_consen   66 SYKWIG   71 (71)
T ss_dssp             EEEE--
T ss_pred             ceEecC
Confidence            999998

Multiple E2F family members have been identified that bind to DNA as heterodimers, interacting with proteins known as DP - the dimerisation partners [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005667 transcription factor complex; PDB: 1CF7_B.

>KOG2578 consensus Transcription factor E2F/dimerization partner (TDP)-like proteins [Transcription]

Probab=98.79  E-value=5.7e-09  Score=102.11  Aligned_cols=69  Identities=25%  Similarity=0.431  Sum_probs=51.7

Q ss_pred             HHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc-CCCceeecCCCCCChhhHHHHHHH
Q 018827          124 DELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKGLPRTSLNDIEELKAE  193 (350)
Q Consensus       124 deLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK-sKk~IqW~G~~~~s~~~~~~Lk~E  193 (350)
                      ..++-.|......+..+++.+....+-|||||||.||||+||++.| -||.++|+|+... -.-+.+|++|
T Consensus        31 ~nfl~lynr~dvdlvgLddaA~KlgVErRRIYDiVNvlEsig~var~~KnqYsWkGf~ai-Pral~eLqeE  100 (388)
T KOG2578|consen   31 QNFLILYNRSDVDLVGLDDAARKLGVERRRIYDIVNVLESIGAVARRGKNQYSWKGFGAI-PRALFELQEE  100 (388)
T ss_pred             HHHHHHhcCCCcceechhhHHHhcCchHHHHHHHHHHHHHHHHHHhcccCcccccchhhh-hHHHHHHHHH
Confidence            3334445555555566778888899999999999999999999999 8999999999642 1223455554

>KOG2578 consensus Transcription factor E2F/dimerization partner (TDP)-like proteins [Transcription]

Probab=96.75  E-value=0.00054  Score=67.88  Aligned_cols=74  Identities=23%  Similarity=0.366  Sum_probs=50.5

Q ss_pred             cCccchhhHHHHHHHHHh--cC-CCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc---
Q 018827           96 SGRGLRQFSMKVCEKVES--KG-RTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK---  169 (350)
Q Consensus        96 ~~~GLR~fS~KVcekVk~--kg-~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK---  169 (350)
                      ..++|-.++..|....-.  +- ..|+-..|.-|+.+-.+.           .-...-=||+|||-|||-+|+||+|   
T Consensus       157 kekSL~lL~qnFvklflcs~~~~lvslD~Aak~Ll~ds~~~-----------~~mRtkvRRLYDIANVlssm~LIeKtH~  225 (388)
T KOG2578|consen  157 KEKSLWLLAQNFVKLFLCSDDDILVSLDSAAKALLKDSEDE-----------PPMRTKVRRLYDIANVLSSMNLIEKTHY  225 (388)
T ss_pred             hhhHHHHHHHHHHHheeccccceEEeecHHHHHHhcCCCCC-----------ccHHHHHHHHHHHHHHHHHhhhhhhhcc
Confidence            347888888877665544  22 567766666666432221           1122344999999999999999999   


Q ss_pred             ---CCCceeecCCC
Q 018827          170 ---DKKEIQWKGLP  180 (350)
Q Consensus       170 ---sKk~IqW~G~~  180 (350)
                         -|--++|.|.-
T Consensus       226 l~trkPafrwlG~~  239 (388)
T KOG2578|consen  226 LFTRKPAFRWLGSK  239 (388)
T ss_pred             cccccchhheeCCC
Confidence               26788999874

>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis

Probab=91.50  E-value=0.17  Score=38.26  Aligned_cols=57  Identities=28%  Similarity=0.384  Sum_probs=45.8

Q ss_pred             cchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc-CCCceee
Q 018827           99 GLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK-DKKEIQW  176 (350)
Q Consensus        99 GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK-sKk~IqW  176 (350)
                      ||...=.+|...+-..|..|-.|||+++-                     .-|..||++++-|+.-|+|++ ..+...|
T Consensus         5 gLs~~E~~vy~~Ll~~~~~t~~eIa~~l~---------------------i~~~~v~~~L~~L~~~GlV~~~~~~~~~Y   62 (68)
T PF01978_consen    5 GLSENEAKVYLALLKNGPATAEEIAEELG---------------------ISRSTVYRALKSLEEKGLVEREEGRPKVY   62 (68)
T ss_dssp             CHHHHHHHHHHHHHHHCHEEHHHHHHHHT---------------------SSHHHHHHHHHHHHHTTSEEEEEECCEEE
T ss_pred             CcCHHHHHHHHHHHHcCCCCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCEEEEcCceEEE
Confidence            56666678888887889899999998874                     567899999999999999999 4444444

TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.

>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences

Probab=85.38  E-value=1.4  Score=33.05  Aligned_cols=55  Identities=24%  Similarity=0.323  Sum_probs=39.1

Q ss_pred             cchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchh
Q 018827           99 GLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIIS  168 (350)
Q Consensus        99 GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIe  168 (350)
                      .|-..+..|++.+  .|..|..|+++.|..+|..             +.+..++.|...++-|...|||+
T Consensus        14 ~Ln~~a~~Iw~~~--~g~~t~~ei~~~l~~~y~~-------------~~~~~~~dv~~fl~~L~~~glIe   68 (68)
T PF05402_consen   14 TLNETAAFIWELL--DGPRTVEEIVDALAEEYDV-------------DPEEAEEDVEEFLEQLREKGLIE   68 (68)
T ss_dssp             ---THHHHHHHH----SSS-HHHHHHHHHHHTT---------------HHHHHHHHHHHHHHHHHTT---
T ss_pred             cccHHHHHHHHHc--cCCCCHHHHHHHHHHHcCC-------------CHHHHHHHHHHHHHHHHHCcCcC
Confidence            7888889999999  3678899999999998844             23467999999999999999985

This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.

>COG1378 Predicted transcriptional regulators [Transcription]

Probab=84.22  E-value=3.3  Score=39.76  Aligned_cols=36  Identities=19%  Similarity=0.404  Sum_probs=28.3

Q ss_pred             hccccchhhhhhhhhhhhccchhc-CCCceeecCCCC
Q 018827          146 DEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKGLPR  181 (350)
Q Consensus       146 DeKniKRRVYDItNVLegIgLIeK-sKk~IqW~G~~~  181 (350)
                      ...+=+=||||+|+.|++-|+++. .++--.++..+.
T Consensus        39 ~sgvP~~kvY~vl~sLe~kG~v~~~~g~P~~y~av~p   75 (247)
T COG1378          39 ASGVPRPKVYDVLRSLEKKGLVEVIEGRPKKYRAVPP   75 (247)
T ss_pred             HcCCCchhHHHHHHHHHHCCCEEeeCCCCceEEeCCH
Confidence            344667899999999999999999 666666665554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	350
1cf7_B	95	Structural Basis Of Dna Recognition By The Heterodi		4e-32
2aze_A	155	Structure Of The Rb C-Terminal Domain Bound To An E		4e-10

>pdb|1CF7|B Chain B, Structural Basis Of Dna Recognition By The Heterodimeric Cell Cycle Transcription Factor E2f-Dp Length = 95

Iteration: 1
 Score =  135 bits (339), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 64/90 (71%), Positives = 75/90 (83%), Gaps = 2/90 (2%)
Query: 94  DKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRR 153
           DK+G+GLR FSMKVCEKV+ KG T+YNEVADELV+EF + +N LA      YD+KNIRRR
Sbjct: 6   DKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHLAAD--SAYDQKNIRRR 63
Query: 154 VYDALNVLMAMDIISKDKKEIQWKGLPRTS 183
           VYDALNVLMAM+IISK+KKEI+W GLP  S
Sbjct: 64  VYDALNVLMAMNIISKEKKEIKWIGLPTNS 93

>pdb|2AZE|A Chain A, Structure Of The Rb C-Terminal Domain Bound To An E2f1-Dp1 Heterodimer Length = 155

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 59/104 (56%), Gaps = 4/104 (3%)
Query: 186 DIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRN---ERLYSSGNAPSGGVALP 242
           + + L+ ER     RI++K + LQEL  Q +  +NL+QRN   E+  S    P+  + LP
Sbjct: 6   ECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRHAEQQASRPPPPNSVIHLP 65
Query: 243 FILVQTRPHATVEVEISEDMQLVHFDFNSTPFKLHDDNSVLKAM 286
           FI+V T     ++  IS D     F+F++T F++HDD  VLK M
Sbjct: 66  FIIVNTSKKTVIDCSISNDKFEYLFNFDNT-FEIHDDIEVLKRM 108

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	350
2aze_A	155	Transcription factor DP-1; coiled coil, beta sandw	3e-44
1cf7_B	95	Protein (transcription factor DP-2); E2F, winged-h	2e-43
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-09
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	7e-06
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	4e-05

>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1 Length = 155

 Score =  148 bits (375), Expect = 3e-44
 Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 21/161 (13%)

Query: 186 DIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRN---ERLYSSGNAPSGGVALP 242
           + + L+ ER     RI++K + LQEL  Q +  +NL+QRN   E+  S    P+  + LP
Sbjct: 6   ECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRHAEQQASRPPPPNSVIHLP 65

Query: 243 FILVQTRPHATVEVEISEDMQLVHFDFNSTPFKLHDDNSVLKAMKFCERQQSDDMAQSFP 302
           FI+V T     ++  IS D     F+F++  F++HDD  VLK M      +S        
Sbjct: 66  FIIVNTSKKTVIDCSISNDKFEYLFNFDN-TFEIHDDIEVLKRMGMACGLESGS------ 118

Query: 303 ADDGEGSSMAGVYQPPQLLPPPRANNSNRPPTSPPVPGILK 343
                  S   +     L+P      +  P  +    G + 
Sbjct: 119 ------CSAEDLKMARSLVPK-----ALEPYVTEMAQGTVG 148

>1cf7_B Protein (transcription factor DP-2); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17 Length = 95

 Score =  144 bits (364), Expect = 2e-43
 Identities = 65/95 (68%), Positives = 77/95 (81%), Gaps = 2/95 (2%)

Query: 89  RAGGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEK 148
           R+  GDK+G+GLR FSMKVCEKV+ KG T+YNEVADELV+EF + +N L       YD+K
Sbjct: 1   RSKKGDKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHL--AADSAYDQK 58

Query: 149 NIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTS 183
           NIRRRVYDALNVLMAM+IISK+KKEI+W GLP  S
Sbjct: 59  NIRRRVYDALNVLMAMNIISKEKKEIKWIGLPTNS 93

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 9e-09
 Identities = 43/293 (14%), Positives = 96/293 (32%), Gaps = 62/293 (21%)

Query: 94  DKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPS----------NSLATPDQQ 143
            K    +++F       VE   R  Y  +   +  E   PS          + L   D Q
Sbjct: 73  SKQEEMVQKF-------VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN-DNQ 124

Query: 144 QYDEKNI-RRRVYDAL-NVLMAMDIISKDKKEIQWKGLP---RTSLNDIEELKAERLGLR 198
            + + N+ R + Y  L   L+ +    +  K +   G+    +T +  ++   + +  ++
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLEL----RPAKNVLIDGVLGSGKTWVA-LDVCLSYK--VQ 177

Query: 199 NRIEKKTAYL-----QELEDQFVGLQNLIQRNERLYSSGNAPSGGVALPF--------IL 245
            +++ K  +L        E     LQ L+ + +  ++S +  S  + L           L
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237

Query: 246 VQTRPHATV-----EVEISEDMQLVHFDFNSTPFKLHDDNSVLKAMKFCERQQ--SDDMA 298
           ++++P+         V+ ++      F+ +           V   +          D  +
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWN--AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295

Query: 299 QSFPADDGEG--SSMAGVYQPPQLLPPPRANNSNRPPTSPPVPGILKARVKHE 349
            +   D+ +            PQ L P          T+P    I+   ++  
Sbjct: 296 MTLTPDEVKSLLLKYLDC--RPQDL-PREVLT-----TNPRRLSIIAESIRDG 340

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 45.1 bits (106), Expect = 7e-06
 Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 16/94 (17%)

Query: 137 LATPDQQQYDEKNIR--RRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAER 194
           +A  D+   + ++IR  R        L  +D  SK  ++ +W+   +    D+EE    +
Sbjct: 74  IAQADRLTQEPESIRKWREEQRKR--LQELDAASKVMEQ-EWREKAK---KDLEEWNQRQ 127

Query: 195 LGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERL 228
                ++EK     +  +  F       Q +  +
Sbjct: 128 ---SEQVEKNKINNRIADKAFYQ-----QPDADI 153

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 42.6 bits (99), Expect = 4e-05
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 24/54 (44%)

Query: 202 EKKTAYLQELEDQFVGLQNLIQRNERLYSSGNAPSGGVALPFILVQTRPHATVE 255
           EK+   L++L+              +LY+  +AP+  +A+          AT+E
Sbjct: 18  EKQA--LKKLQASL-----------KLYADDSAPA--LAI---------KATME 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	350
1cf7_B	95	Protein (transcription factor DP-2); E2F, winged-h	100.0
2aze_A	155	Transcription factor DP-1; coiled coil, beta sandw	99.97
1cf7_A	76	Protein (transcription factor E2F-4); E2F, winged-	99.75
2aze_B	106	Transcription factor E2F1; coiled coil, beta sandw	99.57
1sfx_A	109	Conserved hypothetical protein AF2008; structural	84.53

>1cf7_B Protein (transcription factor DP-2); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17

Probab=100.00  E-value=4.4e-36  Score=246.20  Aligned_cols=92  Identities=70%  Similarity=1.108  Sum_probs=78.1

Q ss_pred             CCccccCccchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhcC
Q 018827           91 GGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD  170 (350)
Q Consensus        91 ~~~~k~~~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeKs  170 (350)
                      ..++|+++||||||++|||||++++.|||+||||+||+||..++++.  +.+++||++|+|||||||||||+|||||+|+
T Consensus         3 ~~~~k~~~GLr~fS~kVcekVk~k~~Tty~eVAdeLV~e~~~~~~~~--~~~~~~d~~~~rRRvYD~~NVl~a~gii~K~   80 (95)
T 1cf7_B            3 KKGDKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHL--AADSAYDQKNIRRRVYDALNVLMAMNIISKE   80 (95)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHSEECHHHHHHHHHHHHHTCTTCC--GGGSHHHHHHHHHHHHHHHHHHHHTTSBCCC
T ss_pred             ccccccCccHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcccccC--ccchhcccccchhhHHHHHHHHHHhcceecC
Confidence            35799999999999999999999999999999999999999876654  4578999999999999999999999999999


Q ss_pred             CCceeecCCCCCCh
Q 018827          171 KKEIQWKGLPRTSL  184 (350)
Q Consensus       171 Kk~IqW~G~~~~s~  184 (350)
                      ||.|+|+|++.++.
T Consensus        81 k~~i~W~g~~~~~~   94 (95)
T 1cf7_B           81 KKEIKWIGLPTNSA   94 (95)
T ss_dssp             SSCEEBCCCC----
T ss_pred             CCEEEEecCCcccc
Confidence            99999999997654

>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1

Probab=99.97  E-value=3.5e-31  Score=233.26  Aligned_cols=119  Identities=31%  Similarity=0.464  Sum_probs=109.1

Q ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---CCCCCCcccceEEEEcCCCcEEEecc
Q 018827          182 TSLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSSG---NAPSGGVALPFILVQTRPHATVEVEI  258 (350)
Q Consensus       182 ~s~~~~~~Lk~El~~L~e~I~~K~~~LqEL~~q~~aLknLierNk~ly~s~---~~~~e~i~LPfIaVkAP~~T~LEVp~  258 (350)
                      ++.++|+.|++|+.+++++|++|+++|+||+.|+++|+||++||+.++...   ..+...|+||||+|+|.++|+|+|++
T Consensus         2 ~s~qe~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vafknLv~RN~~~e~~~~~~~~~~~~I~LPFIlV~T~k~t~I~ceI   81 (155)
T 2aze_A            2 EFAQECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRHAEQQASRPPPPNSVIHLPFIIVNTSKKTVIDCSI   81 (155)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCCCGGGEEESSCEEEEEESSCCEEEEE
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCEeecCEEEEEcCCCCEEEEEE
Confidence            568899999999999999999999999999999999999999999998642   34567899999999999999999999


Q ss_pred             CCCcEEEEEEeCCCCeEEecChhhhhhhcc-ccccCCCCCccCCC
Q 018827          259 SEDMQLVHFDFNSTPFKLHDDNSVLKAMKF-CERQQSDDMAQSFP  302 (350)
Q Consensus       259 peD~~qv~fks~~gPieV~DD~~iLK~m~~-~~~~~~~~~~~~~~  302 (350)
                      ++|+++|||+|++ ||+||||++|||+||| |+.+.+.| +.++.
T Consensus        82 SeD~~~~~F~F~~-pFEIHDD~eVLK~mgl~~gle~g~c-s~e~l  124 (155)
T 2aze_A           82 SNDKFEYLFNFDN-TFEIHDDIEVLKRMGMACGLESGSC-SAEDL  124 (155)
T ss_dssp             CTTSSEEEEEESS-CEEEEEHHHHHHHTTTTTTGGGTCC-CHHHH
T ss_pred             ecCccEEEEeCCC-CeeccChHHHHHHHHHHhCCCCCCC-CHHHH
Confidence            9999999999987 9999999999999999 89999999 65544

>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17

Probab=99.75  E-value=2.6e-19  Score=141.24  Aligned_cols=66  Identities=32%  Similarity=0.553  Sum_probs=57.2

Q ss_pred             ccCccchhhHHHHHHHHHh--cCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc-CC
Q 018827           95 KSGRGLRQFSMKVCEKVES--KGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK-DK  171 (350)
Q Consensus        95 k~~~GLR~fS~KVcekVk~--kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK-sK  171 (350)
                      +..++|..++.+|++.+++  .+.++++++|++|..                    ++|||||||+|||||||||+| +|
T Consensus         7 R~~~SL~~lt~kFi~l~~~~~~~~i~l~~aa~~L~v--------------------~~kRRiYDI~NVLe~igli~K~~k   66 (76)
T 1cf7_A            7 RHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAV--------------------RQKRRIYDITNVLEGIGLIEKKSK   66 (76)
T ss_dssp             TTTTCHHHHHHHHHHHHHHSSTTEEEHHHHHHHTTT--------------------CCTHHHHHHHHHHHHHTSEEEEET
T ss_pred             CccCcHHHHHHHHHHHHHhCCCCcCcHHHHHHHhCC--------------------ccceehhhHHHHHhHhcceeecCC
Confidence            4457999999999999998  578999999999851                    389999999999999999999 89


Q ss_pred             CceeecCCC
Q 018827          172 KEIQWKGLP  180 (350)
Q Consensus       172 k~IqW~G~~  180 (350)
                      |.|+|+|.+
T Consensus        67 ~~~~W~G~~   75 (76)
T 1cf7_A           67 NSIQWKGVG   75 (76)
T ss_dssp             TEEEEC---
T ss_pred             CcEEEeCCC
Confidence            999999985

>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2

Probab=99.57  E-value=1.8e-14  Score=120.04  Aligned_cols=87  Identities=16%  Similarity=0.238  Sum_probs=66.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH--HHH-hhh------cCCCCCCCcccceEEEEcCCCcE
Q 018827          184 LNDIEELKAERLGLRNRIEKKTAYLQELED-QFVGLQNLIQR--NER-LYS------SGNAPSGGVALPFILVQTRPHAT  253 (350)
Q Consensus       184 ~~~~~~Lk~El~~L~e~I~~K~~~LqEL~~-q~~aLknLier--Nk~-ly~------s~~~~~e~i~LPfIaVkAP~~T~  253 (350)
                      ..++..|++|+..|.+..+    .|++++. ....|++|.++  |.. .|+      .+.+|.+++   +||||||+||+
T Consensus         5 ~~~~~~Lk~El~~L~~~E~----~LD~~i~~~~~~l~~lted~~n~~~aYVT~~Di~~i~~f~~qt---viaIkAP~gT~   77 (106)
T 2aze_B            5 GGRLEGLTQDLRQLQESEQ----QLDHLMNICTTQLRLLSEDTDSQRLAYVTCQDLRSIADPAEQM---VMVIKAPPETQ   77 (106)
T ss_dssp             -CHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHCHHHHHHCEEEHHHHHTTSCTTTEE---EEEEECCTTCE
T ss_pred             HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhcccccccceecHHHHhcCcCCCcCe---EEEEECCCCCe
Confidence            3457788888887766553    3444442 23457777764  444 354      346899998   99999999999


Q ss_pred             EEeccCCCcEEEEEEeCCCCeEEe
Q 018827          254 VEVEISEDMQLVHFDFNSTPFKLH  277 (350)
Q Consensus       254 LEVp~peD~~qv~fks~~gPieV~  277 (350)
                      ||||+|++.++|||+|++|||+||
T Consensus        78 LeVpdp~~~yqi~LkS~~GPIdV~  101 (106)
T 2aze_B           78 LQAVDSSENFQISLKSKQGPIDVF  101 (106)
T ss_dssp             EEEEECSSCEEEEEECSSSCCEEE
T ss_pred             eeeCCCCcceEEEEECCCCCEEEE
Confidence            999999999999999999999998

>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50

Probab=84.53  E-value=2.1  Score=32.08  Aligned_cols=52  Identities=21%  Similarity=0.319  Sum_probs=41.8

Q ss_pred             ccchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhcC
Q 018827           98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD  170 (350)
Q Consensus        98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeKs  170 (350)
                      -||-..-..|+..+...+..|..|+|+.+-                     .-+--||.+++.|+.-|+|++.
T Consensus        16 ~~l~~~~~~il~~l~~~~~~s~~ela~~l~---------------------is~~tv~~~l~~L~~~glv~~~   67 (109)
T 1sfx_A           16 LSFKPSDVRIYSLLLERGGMRVSEIARELD---------------------LSARFVRDRLKVLLKRGFVRRE   67 (109)
T ss_dssp             TCCCHHHHHHHHHHHHHCCBCHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEEE
T ss_pred             cCCCHHHHHHHHHHHHcCCCCHHHHHHHHC---------------------CCHHHHHHHHHHHHHCCCEEEE
Confidence            355555577888888778889999998873                     3467899999999999999993

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	350
d1cf7b_	82	a.4.5.17 (B:) Cell cycle transcription factor DP-2	4e-48
d2azea1	148	e.63.1.1 (A:199-346) Transcription factor DP-1 {Hu	1e-46
d1cf7a_	67	a.4.5.17 (A:) Cell cycle transcription factor E2F-	3e-04

>d1cf7b_ a.4.5.17 (B:) Cell cycle transcription factor DP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Cell cycle transcription factor e2f-dp
domain: Cell cycle transcription factor DP-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  154 bits (392), Expect = 4e-48
 Identities = 59/84 (70%), Positives = 69/84 (82%), Gaps = 2/84 (2%)

Query: 97  GRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYD 156
           G+GLR FSMKVCEKV+ KG T+YNEVADELV+EF + +N         YD+KNIRRRVYD
Sbjct: 1   GKGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNH--LAADSAYDQKNIRRRVYD 58

Query: 157 ALNVLMAMDIISKDKKEIQWKGLP 180
           ALNVLMAM+IISK+KKEI+W GLP
Sbjct: 59  ALNVLMAMNIISKEKKEIKWIGLP 82

>d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 148

class: Multi-domain proteins (alpha and beta)
fold: E2F-DP heterodimerization region
superfamily: E2F-DP heterodimerization region
family: DP dimerization segment
domain: Transcription factor DP-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  153 bits (388), Expect = 1e-46
 Identities = 46/140 (32%), Positives = 68/140 (48%), Gaps = 11/140 (7%)

Query: 186 DIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRN---ERLYSSGNAPSGGVALP 242
           + + L+ ER     RI++K + LQEL  Q +  +NL+QRN   E+  S    P+  + LP
Sbjct: 3   ECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRHAEQQASRPPPPNSVIHLP 62

Query: 243 FILVQTRPHATVEVEISEDMQLVHFDFNSTPFKLHDDNSVLKAMKFCERQQSDDMAQSFP 302
           FI+V T     ++  IS D     F+F++T F++HDD  VLK M      +S   +    
Sbjct: 63  FIIVNTSKKTVIDCSISNDKFEYLFNFDNT-FEIHDDIEVLKRMGMACGLESGSCSA--- 118

Query: 303 ADDGEGSSMAGVYQPPQLLP 322
               E   MA    P  L P
Sbjct: 119 ----EDLKMARSLVPKALEP 134

>d1cf7a_ a.4.5.17 (A:) Cell cycle transcription factor E2F-4 {Human (Homo sapiens) [TaxId: 9606]} Length = 67

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Cell cycle transcription factor e2f-dp
domain: Cell cycle transcription factor E2F-4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (84), Expect = 3e-04
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)

Query: 151 RRRVYDALNVLMAMDIISK-DKKEIQWK 177
           +RR+YD  NVL  + +I K  K  IQWK
Sbjct: 40  KRRIYDITNVLEGIGLIEKKSKNSIQWK 67

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	350
d1cf7b_	82	Cell cycle transcription factor DP-2 {Human (Homo	100.0
d2azea1	148	Transcription factor DP-1 {Human (Homo sapiens) [T	99.96
d1cf7a_	67	Cell cycle transcription factor E2F-4 {Human (Homo	99.67
d2azeb1	101	Transcription factor E2F1 {Human (Homo sapiens) [T	99.62
d2a61a1	139	Transcriptional regulator TM0710 {Thermotoga marit	92.62
d1sfxa_	109	Hypothetical protein AF2008 {Archaeoglobus fulgidu	91.3

>d1cf7b_ a.4.5.17 (B:) Cell cycle transcription factor DP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Cell cycle transcription factor e2f-dp
domain: Cell cycle transcription factor DP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.6e-39  Score=254.51  Aligned_cols=82  Identities=73%  Similarity=1.184  Sum_probs=76.6

Q ss_pred             CccchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhcCCCceee
Q 018827           97 GRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQW  176 (350)
Q Consensus        97 ~~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeKsKk~IqW  176 (350)
                      |+||||||++|||||+++++|||+||||+||+||..+....  ..+++||+||||||||||||||||||||+|+||.|+|
T Consensus         1 gkgLr~~S~kVcekV~~k~~TtY~eVAdeLv~e~~~~~~~~--~~~~~~d~KNIRRRVYDALNVLmA~~II~K~kK~I~W   78 (82)
T d1cf7b_           1 GKGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHL--AADSAYDQKNIRRRVYDALNVLMAMNIISKEKKEIKW   78 (82)
T ss_dssp             CCHHHHHHHHHHHHHHHHSEECHHHHHHHHHHHHHTCTTCC--GGGSHHHHHHHHHHHHHHHHHHHHTTSBCCCSSCEEB
T ss_pred             CccHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhccCC--CcchhhcchhhhHHHHHHHHHHHHHhhhhhcCceeEe
Confidence            58999999999999999999999999999999999876542  3468999999999999999999999999999999999


Q ss_pred             cCCC
Q 018827          177 KGLP  180 (350)
Q Consensus       177 ~G~~  180 (350)
                      +|+|
T Consensus        79 ~Glp   82 (82)
T d1cf7b_          79 IGLP   82 (82)
T ss_dssp             CCCC
T ss_pred             ecCC
Confidence            9997

>d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Multi-domain proteins (alpha and beta)
fold: E2F-DP heterodimerization region
superfamily: E2F-DP heterodimerization region
family: DP dimerization segment
domain: Transcription factor DP-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.1e-30  Score=222.67  Aligned_cols=116  Identities=32%  Similarity=0.482  Sum_probs=106.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---CCCCCCCcccceEEEEcCCCcEEEeccCCC
Q 018827          185 NDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSS---GNAPSGGVALPFILVQTRPHATVEVEISED  261 (350)
Q Consensus       185 ~~~~~Lk~El~~L~e~I~~K~~~LqEL~~q~~aLknLierNk~ly~s---~~~~~e~i~LPfIaVkAP~~T~LEVp~peD  261 (350)
                      ++|+.|++|+.+++++|++|+++|+||+.|+++|+||++||+.++..   .+.+++.|+||||+|+|.++|+|+|++++|
T Consensus         2 Qe~~~Le~E~~~~~erI~~K~~~LqeLi~Q~iafknLV~RN~~~e~~~~~~~~~~~~I~LPFIiV~T~~~t~IdceISeD   81 (148)
T d2azea1           2 QECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRHAEQQASRPPPPNSVIHLPFIIVNTSKKTVIDCSISND   81 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCCCGGGEEESSCEEEEEESSCCEEEEECTT
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCCCCCCCeeecCEEEEecCCCCEEEEEEccc
Confidence            68999999999999999999999999999999999999999887643   345668899999999999999999999999


Q ss_pred             cEEEEEEeCCCCeEEecChhhhhhhcc-ccccCCCCCccCCC
Q 018827          262 MQLVHFDFNSTPFKLHDDNSVLKAMKF-CERQQSDDMAQSFP  302 (350)
Q Consensus       262 ~~qv~fks~~gPieV~DD~~iLK~m~~-~~~~~~~~~~~~~~  302 (350)
                      +.+|||+|++ ||+||||++|||+||| ++.+.+.| +.++.
T Consensus        82 k~~y~F~Fn~-tFeIhDD~~VLK~Mgl~~gl~~g~~-s~e~~  121 (148)
T d2azea1          82 KFEYLFNFDN-TFEIHDDIEVLKRMGMACGLESGSC-SAEDL  121 (148)
T ss_dssp             SSEEEEEESS-CEEEEEHHHHHHHTTTTTTGGGTCC-CHHHH
T ss_pred             ceeEEecCCC-CeEEechHHHHHHHHHHhCCCCCCC-CHHHH
Confidence            9999999987 7999999999999999 78888999 65543

>d1cf7a_ a.4.5.17 (A:) Cell cycle transcription factor E2F-4 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Cell cycle transcription factor e2f-dp
domain: Cell cycle transcription factor E2F-4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=9.8e-18  Score=127.94  Aligned_cols=62  Identities=32%  Similarity=0.538  Sum_probs=55.6

Q ss_pred             cCccchhhHHHHHHHHHh--cCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc-CCC
Q 018827           96 SGRGLRQFSMKVCEKVES--KGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK-DKK  172 (350)
Q Consensus        96 ~~~GLR~fS~KVcekVk~--kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK-sKk  172 (350)
                      ..++|..++.+|...+.+  .+..+.+++|+.|..                    .+|||||||+|||||||||+| +||
T Consensus         3 ~ekSLglLt~kFl~l~~~~~~~~~~L~~aa~~L~v--------------------~~kRRiYDI~NVLe~igli~K~~Kn   62 (67)
T d1cf7a_           3 HEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAV--------------------RQKRRIYDITNVLEGIGLIEKKSKN   62 (67)
T ss_dssp             TTTCHHHHHHHHHHHHHHSSTTEEEHHHHHHHTTT--------------------CCTHHHHHHHHHHHHHTSEEEEETT
T ss_pred             hhhhHHHHHHHHHHHHhhCCCCeeeHHHHHHHhcC--------------------cchhhHHHHHHHHhhhhhhhcccCC
Confidence            457899999999999997  688899999999851                    278999999999999999999 999


Q ss_pred             ceeec
Q 018827          173 EIQWK  177 (350)
Q Consensus       173 ~IqW~  177 (350)
                      .|+|+
T Consensus        63 ~~~W~   67 (67)
T d1cf7a_          63 SIQWK   67 (67)
T ss_dssp             EEEEC
T ss_pred             ccccC
Confidence            99996

>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}

class: Multi-domain proteins (alpha and beta)
fold: E2F-DP heterodimerization region
superfamily: E2F-DP heterodimerization region
family: E2F dimerization segment
domain: Transcription factor E2F1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.5e-15  Score=123.76  Aligned_cols=85  Identities=16%  Similarity=0.259  Sum_probs=63.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH--HHH-hhh------cCCCCCCCcccceEEEEcCCCcEEE
Q 018827          186 DIEELKAERLGLRNRIEKKTAYLQELED-QFVGLQNLIQR--NER-LYS------SGNAPSGGVALPFILVQTRPHATVE  255 (350)
Q Consensus       186 ~~~~Lk~El~~L~e~I~~K~~~LqEL~~-q~~aLknLier--Nk~-ly~------s~~~~~e~i~LPfIaVkAP~~T~LE  255 (350)
                      +++.|++|+++|.+..+    .|++++. -...|++|.+.  |.. .|+      +..+|++++   +||||||+||+||
T Consensus         2 r~~~L~~El~~L~~~E~----~LD~li~~~~~~L~~lted~~n~k~ayVT~~Di~~i~~f~~~t---viaIkAP~gT~Le   74 (101)
T d2azeb1           2 RLEGLTQDLRQLQESEQ----QLDHLMNICTTQLRLLSEDTDSQRLAYVTCQDLRSIADPAEQM---VMVIKAPPETQLQ   74 (101)
T ss_dssp             HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHCHHHHHHCEEEHHHHHTTSCTTTEE---EEEEECCTTCEEE
T ss_pred             hhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhchhhccCCccCHHHHhhCCCcccce---EEEEECCCCCEEe
Confidence            35677788777765543    3334332 23346666643  544 354      357899999   9999999999999


Q ss_pred             eccCCCcEEEEEEeCCCCeEEe
Q 018827          256 VEISEDMQLVHFDFNSTPFKLH  277 (350)
Q Consensus       256 Vp~peD~~qv~fks~~gPieV~  277 (350)
                      ||+|++.++||++|++|||+||
T Consensus        75 VPdp~~~yqi~lkS~~GpI~V~   96 (101)
T d2azeb1          75 AVDSSENFQISLKSKQGPIDVF   96 (101)
T ss_dssp             EEECSSCEEEEEECSSSCCEEE
T ss_pred             ecCCCccEEEEEecCCCCEEEE
Confidence            9999999999999999999998

>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator TM0710
species: Thermotoga maritima [TaxId: 2336]

Probab=92.62  E-value=0.29  Score=38.10  Aligned_cols=72  Identities=15%  Similarity=0.172  Sum_probs=52.6

Q ss_pred             ccchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhcC----CCc
Q 018827           98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD----KKE  173 (350)
Q Consensus        98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeKs----Kk~  173 (350)
                      -||-.--..|...+...+.+|..|+|+.+.                     .-+--|.-++|.|+..|+|+|.    .+.
T Consensus        26 ~glt~~q~~iL~~i~~~~~~t~~~la~~l~---------------------i~~~tvs~~l~~L~~~gli~r~~~~~D~R   84 (139)
T d2a61a1          26 FGITPAQFDILQKIYFEGPKRPGELSVLLG---------------------VAKSTVTGLVKRLEADGYLTRTPDPADRR   84 (139)
T ss_dssp             HTCCHHHHHHHHHHHHHCCBCHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred             cCCCHHHHHHHHHHHHcCCCCHHHHHHHhC---------------------CCcccchHHHHHHHhcCeeeeeeccCCCC
Confidence            366666677888888888889999999886                     3345688999999999999982    356


Q ss_pred             eeecCCCCCChhhHHHH
Q 018827          174 IQWKGLPRTSLNDIEEL  190 (350)
Q Consensus       174 IqW~G~~~~s~~~~~~L  190 (350)
                      ..|..+......-++++
T Consensus        85 ~~~i~LT~~G~~~~~~~  101 (139)
T d2a61a1          85 AYFLVITRKGEEVIEKV  101 (139)
T ss_dssp             EEEEEECHHHHHHHHHH
T ss_pred             eEEEEECHHHHHHHHHH
Confidence            77777754433333333

>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: TrmB-like
domain: Hypothetical protein AF2008
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.30  E-value=0.034  Score=42.81  Aligned_cols=51  Identities=22%  Similarity=0.307  Sum_probs=42.7

Q ss_pred             ccchhhHHHHHHHHHhcCCCCHHHHHHHHHHhhcCCCCCCCCCChhhhhccccchhhhhhhhhhhhccchhc
Q 018827           98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK  169 (350)
Q Consensus        98 ~GLR~fS~KVcekVk~kg~TTYnEVAdeLV~E~~~~~~~~~~~~~~~~DeKniKRRVYDItNVLegIgLIeK  169 (350)
                      -||..--.+|+..+-+.|..|-.|||+.+-                     .-+..||++++-|+.-|+|+|
T Consensus        16 lGlt~~e~~v~~~L~~~g~~t~~eia~~~~---------------------i~~~~v~~~l~~L~~~GlV~r   66 (109)
T d1sfxa_          16 LSFKPSDVRIYSLLLERGGMRVSEIARELD---------------------LSARFVRDRLKVLLKRGFVRR   66 (109)
T ss_dssp             TCCCHHHHHHHHHHHHHCCBCHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred             cCCCHHHHHHHHHHHhcCCCCHHHHHHHhC---------------------CCcchHHHHHHHHHhCCCEEE
Confidence            466666678888888888888888888864                     567899999999999999987