Citrus Sinensis ID: 018839

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350
MTDACIRGVVEAIHASPTQAVVYIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQLLGQIPNQFCSQQTAVNMALLAYNRALKLSRPGAPVLGVGFTGALASTHPKLGDHRFHLSTRTSDRLWVSTVTLSKGLRTREQEDKVSSHLLLKAMASACKVPATFNSELTDSETVDECEQQFSEDQELEQIINGEICFKVYPFLNETQVFNEERKIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVNADKPPLSVSQIKDRVKQFEKVGMTVIISNQPYFYKKAEFFPGSAFVIGADTAARLIDPKYYDGDPGKMVEVLSGCKRTGCTFIVAGRNIDGVFKVCT
ccHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHcccccccHHccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccccEEEEccccccccccccccccEEEEEEEccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHccccHHHHHHHHcccccEEEEcccccccccccccEEEEccccccccHHHHHHHHHHHHHccccccEEEEEEcccccccccHHHHHHHHHHHHccccEEEEEcccHHHHHHHHccccEEEEEHHHHHHHHccccccccccHHHHHHHHHHHcccEEEEEEEcccccccccc
ccHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHcccccccHHHEEEccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEEEHHccccccccccEEEEEEEEcccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHccccccccHHccccccHHHHHHHccccHHHHHHHcccEEEEEEcccccccccccccEEEEccccccHHHHHHHHHHHHHHHccccccEEEEEEEccccccccHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHccccEEEEEcHHHHHHccHHHccccHHHHHHHHHHHHHcccEEEEEEEccccEEEEEc
MTDACIRGVVEAIHASPTQAVVYIAGGASQALGMLmsipgatntVLEAVVPYSRMSMIQLLGqipnqfcsQQTAVNMALLAYNRALklsrpgapvlgvgftgalasthpklgdhrfhlstrtsdrlWVSTVTLskglrtreqEDKVSSHLLLKAMASAckvpatfnseltdsetvDECEQQFSEDQELEQIINGEicfkvypflnetqvfNEERKIIlsgsfnplhdgHLKLLEVATRicgngypcfelsavnadkpplsvsQIKDRVKQFEKVGMTVIIsnqpyfykkaeffpgsafvigadtaarlidpkyydgdpgkmvevlsgckrtgctfivagrnidgvfkvct
MTDACIRGVVEaihasptqAVVYIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQLLGQIPNQFCSQQTAVNMALLAYNRALKLSRPGAPVLGVGFTGALASTHPKLGDHRFHlstrtsdrlwvSTVTlskglrtreqeDKVSSHLLLKAMASACKVPATFNSELTDSETVDECEQQFSEDQELEQIINGEICFKVYPFLNETQVFNEERKIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVNADKPPLSVSQIKDRVKQFEKVGMTVIISNQPYFYKKAEFFPGSAFVIGADTAARLIDPKYYDGDPGKMVEVLSGCKRTGctfivagrnidgvfkvct
MTDACIRGVVEAIHASPTQAVVYIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQLLGQIPNQFCSQQTAVNMALLAYNRALKLSRPGAPVLGVGFTGALASTHPKLGDHRFHLSTRTSDRLWVSTVTLSKGLRTREQEDKVSSHLLLKAMASACKVPATFNSELTDSETVDECEQQFSEDQELEQIINGEICFKVYPFLNETQVFNEERKIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVNADKPPLSVSQIKDRVKQFEKVGMTVIISNQPYFYKKAEFFPGSAFVIGADTAARLIDPKYYDGDPGKMVEVLSGCKRTGCTFIVAGRNIDGVFKVCT
***ACIRGVVEAIHASPTQAVVYIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQLLGQIPNQFCSQQTAVNMALLAYNRALKLSRPGAPVLGVGFTGALASTHPKLGDHRFHLSTRTSDRLWVSTVTLSKG************HLLLKAMASACKVPATF**********************LEQIINGEICFKVYPFLNETQVFNEERKIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVNADKPPLSVSQIKDRVKQFEKVGMTVIISNQPYFYKKAEFFPGSAFVIGADTAARLIDPKYYDGDPGKMVEVLSGCKRTGCTFIVAGRNIDGVFKVC*
****CIRGVVEAIHASPTQAVVYIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQLLGQIPNQFCSQQTAVNMALLAYNRALKLSRPGAPVLGVGFTGALASTHPKLGDHRFHLSTRTSDRLWVSTVTLSKGLRTREQEDKVSSHLLLKAMASACKVPATFNSEL*************SEDQELEQIINGEICFKVYPFLN***VFNEERKIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVNADKPPLSVSQIKDRVKQFEKVGMTVIISNQPYFYKKAEFFPGSAFVIGADTAARLIDPKYYDGDPGKMVEVLSGCKRTGCTFIVAGRNIDG**KVC*
MTDACIRGVVEAIHASPTQAVVYIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQLLGQIPNQFCSQQTAVNMALLAYNRALKLSRPGAPVLGVGFTGALASTHPKLGDHRFHLSTRTSDRLWVSTVTLSKGLRTREQEDKVSSHLLLKAMASACKVPATFNSEL*****************ELEQIINGEICFKVYPFLNETQVFNEERKIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVNADKPPLSVSQIKDRVKQFEKVGMTVIISNQPYFYKKAEFFPGSAFVIGADTAARLIDPKYYDGDPGKMVEVLSGCKRTGCTFIVAGRNIDGVFKVCT
*TDACIRGVVEAIHASPTQAVVYIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQLLGQIPNQFCSQQTAVNMALLAYNRALKLSRPGAPVLGVGFTGALASTHPKLGDHRFHLSTRTSDRLWVSTVTLSKGLRTREQEDKVSSHLLLKAMASACKVPATFNSELTDSETVDECEQQFSEDQELEQIINGEICFKVYPFLNETQVFNEERKIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVNADKPPLSVSQIKDRVKQFEKVGMTVIISNQPYFYKKAEFFPGSAFVIGADTAARLIDPKYYDGDPGKMVEVLSGCKRTGCTFIVAGRNIDGVFKVCT
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTDACIRGVVEAIHASPTQAVVYIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQLLGQIPNQFCSQQTAVNMALLAYNRALKLSRPGAPVLGVGFTGALASTHPKLGDHRFHLSTRTSDRLWVSTVTLSKGLRTREQEDKVSSHLLLKAMASACKVPATFNSELTDSETVDECEQQFSEDQELEQIINGEICFKVYPFLNETQVFNEERKIILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVNADKPPLSVSQIKDRVKQFEKVGMTVIISNQPYFYKKAEFFPGSAFVIGADTAARLIDPKYYDGDPGKMVEVLSGCKRTGCTFIVAGRNIDGVFKVCT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query350
255570653385 conserved hypothetical protein [Ricinus 0.994 0.903 0.801 1e-167
224108409385 predicted protein [Populus trichocarpa] 0.994 0.903 0.801 1e-164
225424077391 PREDICTED: uncharacterized protein LOC10 0.994 0.890 0.790 1e-163
297737774390 unnamed protein product [Vitis vinifera] 0.988 0.887 0.792 1e-163
217072392382 unknown [Medicago truncatula] 0.985 0.903 0.767 1e-161
388515057382 unknown [Medicago truncatula] 0.985 0.903 0.767 1e-161
388512673382 unknown [Medicago truncatula] 0.985 0.903 0.764 1e-160
363814308382 uncharacterized protein LOC100783332 [Gl 0.985 0.903 0.735 1e-157
449458765385 PREDICTED: uncharacterized protein LOC10 0.994 0.903 0.741 1e-156
297814364388 nucleotidyltransferase [Arabidopsis lyra 0.994 0.896 0.706 1e-148
>gi|255570653|ref|XP_002526281.1| conserved hypothetical protein [Ricinus communis] gi|223534362|gb|EEF36070.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  595 bits (1534), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 279/348 (80%), Positives = 318/348 (91%)

Query: 1   MTDACIRGVVEAIHASPTQAVVYIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQL 60
           MT+A IRGVVEAIHASP QAV+Y++GGASQA+G L+S+PGA+NTVLE+VVPYSRMSMIQL
Sbjct: 1   MTEAWIRGVVEAIHASPIQAVIYLSGGASQAIGWLVSVPGASNTVLESVVPYSRMSMIQL 60

Query: 61  LGQIPNQFCSQQTAVNMALLAYNRALKLSRPGAPVLGVGFTGALASTHPKLGDHRFHLST 120
           LG+IP+ F S QTA +MALLAY+RALKLS PG+PVLGVGFTG+LAST PKLGDHRFHLST
Sbjct: 61  LGKIPSHFVSLQTAEDMALLAYSRALKLSTPGSPVLGVGFTGSLASTRPKLGDHRFHLST 120

Query: 121 RTSDRLWVSTVTLSKGLRTREQEDKVSSHLLLKAMASACKVPATFNSELTDSETVDECEQ 180
           RTSDRLW STVTLSKGLRTREQED +SS +LLKA+A+A KV ATF S+LT+S+  +ECE+
Sbjct: 121 RTSDRLWTSTVTLSKGLRTREQEDALSSQILLKAIANASKVQATFVSDLTESDASNECEK 180

Query: 181 QFSEDQELEQIINGEICFKVYPFLNETQVFNEERKIILSGSFNPLHDGHLKLLEVATRIC 240
           QFSEDQELEQ+ING+ICFKVYPF + +   +EERKIILSGSFNPLH+GHLKL+EVA  IC
Sbjct: 181 QFSEDQELEQLINGQICFKVYPFSSVSHTSSEERKIILSGSFNPLHEGHLKLMEVAASIC 240

Query: 241 GNGYPCFELSAVNADKPPLSVSQIKDRVKQFEKVGMTVIISNQPYFYKKAEFFPGSAFVI 300
           GNGYPCFELSAVNADKPPLSVSQIKDRVKQFE+VG TVI+SNQP+FYKKAE FPGSAFVI
Sbjct: 241 GNGYPCFELSAVNADKPPLSVSQIKDRVKQFEEVGKTVIVSNQPFFYKKAELFPGSAFVI 300

Query: 301 GADTAARLIDPKYYDGDPGKMVEVLSGCKRTGCTFIVAGRNIDGVFKV 348
           GADTAARLI+ KYYDGD GKM+E+L GCKRTGCTF+V GRN+DGVFKV
Sbjct: 301 GADTAARLINTKYYDGDYGKMIEILMGCKRTGCTFLVGGRNVDGVFKV 348

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224108409|ref|XP_002314838.1| predicted protein [Populus trichocarpa] gi|222863878|gb|EEF01009.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225424077|ref|XP_002283677.1| PREDICTED: uncharacterized protein LOC100264619 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297737774|emb|CBI26975.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|217072392|gb|ACJ84556.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|388515057|gb|AFK45590.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|388512673|gb|AFK44398.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|363814308|ref|NP_001242793.1| uncharacterized protein LOC100783332 [Glycine max] gi|255644499|gb|ACU22753.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|449458765|ref|XP_004147117.1| PREDICTED: uncharacterized protein LOC101217608 [Cucumis sativus] Back     alignment and taxonomy information
>gi|297814364|ref|XP_002875065.1| nucleotidyltransferase [Arabidopsis lyrata subsp. lyrata] gi|297320903|gb|EFH51324.1| nucleotidyltransferase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query350
TAIR|locus:2038711388 AT2G01220 [Arabidopsis thalian 0.994 0.896 0.698 4.4e-132
TAIR|locus:2038711 AT2G01220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1295 (460.9 bits), Expect = 4.4e-132, P = 4.4e-132
 Identities = 243/348 (69%), Positives = 293/348 (84%)

Query:     1 MTDACIRGVVEAIHASPTQAVVYIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQL 60
             M DA IR VVEAIH+SPTQAVVY+ GGAS ALG LMS+PGA+NT+LE+VVPYSR+SM+QL
Sbjct:     1 MGDAAIRTVVEAIHSSPTQAVVYLCGGASLALGWLMSVPGASNTLLESVVPYSRVSMVQL 60

Query:    61 LGQIPNQFCSQQTAVNMALLAYNRALKLSRPGAPVLGVGFTGALASTHPKLGDHRFHLST 120
             LG++P+Q CSQ  A  MALLAYNRALKLS+PG PVLGVGFTG+L ++ PK GDHRF LS 
Sbjct:    61 LGRVPSQHCSQALAKEMALLAYNRALKLSKPGYPVLGVGFTGSLVTSRPKRGDHRFFLSM 120

Query:   121 RTSDRLWVSTVTLSKGLRTREQEDKVSSHLLLKAMASACKVPATFNSELTDSETVDECEQ 180
             R SDR+  S+VTL+K LR+RE+EDKVSS  L++AMA AC+V  T +S LT+SE   E E 
Sbjct:   121 RASDRILESSVTLTKNLRSREEEDKVSSCALIQAMAKACQVSGTLDSGLTESEVPYESET 180

Query:   181 QFSEDQELEQIINGEICFKVYPFLNETQVFNEERKIILSGSFNPLHDGHLKLLEVATRIC 240
              F+E+QELEQ+ING +C K+YPF  E    +E+RKIIL GSFNPLH+GHLKLLEVA  +C
Sbjct:   181 HFTEEQELEQLINGHLCCKIYPFSGEAHGSDEDRKIILPGSFNPLHEGHLKLLEVAMSVC 240

Query:   241 GNGYPCFELSAVNADKPPLSVSQIKDRVKQFEKVGMTVIISNQPYFYKKAEFFPGSAFVI 300
             G GYPCFE+SA+NADKPPL+++QIKDRVKQFE VG T+I+SNQPYFYKKAE FPGS+FVI
Sbjct:   241 GGGYPCFEISAINADKPPLTIAQIKDRVKQFEVVGKTIIVSNQPYFYKKAELFPGSSFVI 300

Query:   301 GADTAARLIDPKYYDGDPGKMVEVLSGCKRTGCTFIVAGRNIDGVFKV 348
             GADTAARL++PKYY+G   +M+E+L  CKRTGCTF+V GRN+DGVFKV
Sbjct:   301 GADTAARLVNPKYYEGSIKRMLEILGDCKRTGCTFLVGGRNVDGVFKV 348


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.135   0.395    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      350       350    0.0010  116 3  11 22  0.38    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  607 (65 KB)
  Total size of DFA:  220 KB (2122 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  28.41u 0.18s 28.59t   Elapsed:  00:00:01
  Total cpu time:  28.41u 0.18s 28.59t   Elapsed:  00:00:01
  Start:  Fri May 10 06:55:50 2013   End:  Fri May 10 06:55:51 2013
GO:0009058 "biosynthetic process" evidence=IEA
GO:0016779 "nucleotidyltransferase activity" evidence=IEA
GO:0009941 "chloroplast envelope" evidence=IDA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_X001092
hypothetical protein (385 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query350
cd02165192 cd02165, NMNAT, Nicotinamide/nicotinate mononucleo 7e-10
pfam01467148 pfam01467, CTP_transf_2, Cytidylyltransferase 7e-07
TIGR00482193 TIGR00482, TIGR00482, nicotinate (nicotinamide) nu 2e-05
COG1057197 COG1057, NadD, Nicotinic acid mononucleotide adeny 7e-05
PRK00777153 PRK00777, PRK00777, phosphopantetheine adenylyltra 7e-05
PRK00071203 PRK00071, nadD, nicotinic acid mononucleotide aden 1e-04
PRK13964140 PRK13964, coaD, phosphopantetheine adenylyltransfe 2e-04
cd02164143 cd02164, PPAT_CoAS, phosphopantetheine adenylyltra 2e-04
COG1019158 COG1019, COG1019, Predicted nucleotidyltransferase 5e-04
PRK07152 342 PRK07152, nadD, putative nicotinate-nucleotide ade 0.002
cd02039143 cd02039, cytidylyltransferase_like, Cytidylyltrans 0.002
>gnl|CDD|185680 cd02165, NMNAT, Nicotinamide/nicotinate mononucleotide adenylyltransferase Back     alignment and domain information 
 Score = 57.6 bits (140), Expect = 7e-10
 Identities = 40/149 (26%), Positives = 56/149 (37%), Gaps = 47/149 (31%)

Query: 217 ILSGSFNPLHDGHLKLLEVATRICGNGYPCFELSAVNADKPPLSVSQIKDRVKQFEKVGM 276
           +  GSF+P H GHL + E A    G        SA    KPP   S  + R++      +
Sbjct: 3   LFGGSFDPPHLGHLAIAEEALEELGLDRVLLLPSANPPHKPPKPAS-FEHRLEM-----L 56

Query: 277 TVIISNQPYF-------------------------YKKAEFFPGSAFVIGADTAARLIDP 311
            + I + P F                         Y  AE +    F+IG+D   RL  P
Sbjct: 57  KLAIEDNPKFEVSDIEIKRDGPSYTIDTLEELRERYPNAELY----FIIGSDNLIRL--P 110

Query: 312 KYYDGDPGKMVEVLSGCKRTGCTFIVAGR 340
           K+YD +     E+LS         +VA R
Sbjct: 111 KWYDWE-----ELLS-----LVHLVVAPR 129

Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis. Length = 192
>gnl|CDD|216517 pfam01467, CTP_transf_2, Cytidylyltransferase Back     alignment and domain information
>gnl|CDD|232994 TIGR00482, TIGR00482, nicotinate (nicotinamide) nucleotide adenylyltransferase Back     alignment and domain information
>gnl|CDD|223985 COG1057, NadD, Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|234834 PRK00777, PRK00777, phosphopantetheine adenylyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|234611 PRK00071, nadD, nicotinic acid mononucleotide adenylyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|184424 PRK13964, coaD, phosphopantetheine adenylyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|173915 cd02164, PPAT_CoAS, phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes Back     alignment and domain information
>gnl|CDD|223950 COG1019, COG1019, Predicted nucleotidyltransferase [General function prediction only] Back     alignment and domain information
>gnl|CDD|235947 PRK07152, nadD, putative nicotinate-nucleotide adenylyltransferase; Validated Back     alignment and domain information
>gnl|CDD|185678 cd02039, cytidylyltransferase_like, Cytidylyltransferase-like domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 350
COG1546162 CinA Uncharacterized protein (competence- and mito 100.0
PRK03661164 hypothetical protein; Validated 99.96
PRK03657170 hypothetical protein; Validated 99.96
PF02464154 CinA: Competence-damaged protein; InterPro: IPR008 99.96
TIGR00199146 cinA_cterm competence/damage-inducible protein Cin 99.95
COG1057197 NadD Nicotinic acid mononucleotide adenylyltransfe 99.94
PRK00549414 competence damage-inducible protein A; Provisional 99.92
TIGR00200413 cinA_nterm competence/damage-inducible protein Cin 99.92
PRK06973243 nicotinic acid mononucleotide adenylyltransferase; 99.91
PRK00071203 nadD nicotinic acid mononucleotide adenylyltransfe 99.9
TIGR00482193 nicotinate (nicotinamide) nucleotide adenylyltrans 99.9
PRK07152 342 nadD putative nicotinate-nucleotide adenylyltransf 99.89
cd02165192 NMNAT Nicotinamide/nicotinate mononucleotide adeny 99.88
PRK08887174 nicotinic acid mononucleotide adenylyltransferase; 99.85
PLN02945236 nicotinamide-nucleotide adenylyltransferase/nicoti 99.83
cd09286225 NMNAT_Eukarya Nicotinamide/nicotinate mononucleoti 99.81
PF01467157 CTP_transf_2: Cytidylyltransferase; InterPro: IPR0 99.73
TIGR01510155 coaD_prev_kdtB pantetheine-phosphate adenylyltrans 99.53
cd02163153 PPAT Phosphopantetheine adenylyltransferase. Phosp 99.51
PRK03673396 hypothetical protein; Provisional 99.51
cd02039143 cytidylyltransferase_like Cytidylyltransferase-lik 99.44
PRK00168159 coaD phosphopantetheine adenylyltransferase; Provi 99.44
PRK13964140 coaD phosphopantetheine adenylyltransferase; Provi 99.36
cd02167158 NMNAT_NadR Nicotinamide/nicotinate mononucleotide 99.25
PRK00962165 hypothetical protein; Provisional 99.2
TIGR0012566 cyt_tran_rel cytidyltransferase-related domain. Pr 99.15
COG0669159 CoaD Phosphopantetheine adenylyltransferase [Coenz 99.13
TIGR01526 325 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr 99.1
cd02166163 NMNAT_Archaea Nicotinamide/nicotinate mononucleoti 99.07
cd02168181 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide 99.02
PRK00777153 phosphopantetheine adenylyltransferase; Provisiona 99.02
PRK13671 298 hypothetical protein; Provisional 99.02
PRK01153174 nicotinamide-nucleotide adenylyltransferase; Provi 99.01
cd02170136 cytidylyltransferase cytidylyltransferase. The cyt 98.98
PRK05379 340 bifunctional nicotinamide mononucleotide adenylylt 98.95
TIGR01527165 arch_NMN_Atrans nicotinamide-nucleotide adenylyltr 98.93
cd02156105 nt_trans nucleotidyl transferase superfamily. nt_t 98.93
TIGR00124332 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP 98.82
smart00764182 Citrate_ly_lig Citrate lyase ligase C-terminal dom 98.74
cd02164143 PPAT_CoAS phosphopantetheine adenylyltransferase d 98.71
cd02171129 G3P_Cytidylyltransferase glycerol-3-phosphate cyti 98.66
KOG3199234 consensus Nicotinamide mononucleotide adenylyl tra 98.64
cd02169297 Citrate_lyase_ligase Citrate lyase ligase. Citrate 98.61
cd02174150 CCT CTP:phosphocholine cytidylyltransferase. CTP:p 98.53
cd02173152 ECT CTP:phosphoethanolamine cytidylyltransferase ( 98.52
PRK13793196 nicotinamide-nucleotide adenylyltransferase; Provi 98.45
PRK08099 399 bifunctional DNA-binding transcriptional repressor 98.44
cd02064180 FAD_synthetase_N FAD synthetase, N-terminal domain 98.4
TIGR00339383 sopT ATP sulphurylase. Members of this family also 98.3
cd02172144 RfaE_N N-terminal domain of RfaE. RfaE is a protei 98.1
PF05636 388 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPr 98.08
COG1056172 NadR Nicotinamide mononucleotide adenylyltransfera 98.05
PTZ00308353 ethanolamine-phosphate cytidylyltransferase; Provi 98.04
TIGR01518125 g3p_cytidyltrns glycerol-3-phosphate cytidylyltran 97.9
TIGR02199144 rfaE_dom_II rfaE bifunctional protein, domain II. 97.8
PLN02406 418 ethanolamine-phosphate cytidylyltransferase 97.6
COG1019158 Predicted nucleotidyltransferase [General function 97.42
PRK13670 388 hypothetical protein; Provisional 97.36
PLN02388177 phosphopantetheine adenylyltransferase 97.31
COG0615140 TagD Cytidylyltransferase [Cell envelope biogenesi 97.3
PTZ00308 353 ethanolamine-phosphate cytidylyltransferase; Provi 97.22
PF06574157 FAD_syn: FAD synthetase; InterPro: IPR015864 Ribof 97.06
PRK01170 322 phosphopantetheine adenylyltransferase/unknown dom 97.04
PRK05627 305 bifunctional riboflavin kinase/FMN adenylyltransfe 96.98
PF08218182 Citrate_ly_lig: Citrate lyase ligase C-terminal do 96.89
PRK07143 279 hypothetical protein; Provisional 96.76
TIGR00083 288 ribF riboflavin kinase/FMN adenylyltransferase. mu 96.66
COG1323 358 Predicted nucleotidyltransferase [General function 96.56
PLN02413 294 choline-phosphate cytidylyltransferase 96.32
PRK11316473 bifunctional heptose 7-phosphate kinase/heptose 1- 95.89
PLN02406418 ethanolamine-phosphate cytidylyltransferase 95.68
COG3053352 CitC Citrate lyase synthetase [Energy production a 95.62
COG0196 304 RibF FAD synthase [Coenzyme metabolism] 95.16
cd00517353 ATPS ATP-sulfurylase. ATP-sulfurylase (ATPS), also 94.84
PF01747215 ATP-sulfurylase: ATP-sulfurylase; InterPro: IPR002 94.71
PRK04149391 sat sulfate adenylyltransferase; Reviewed 94.26
KOG3351293 consensus Predicted nucleotidyltransferase [Genera 92.67
COG2046397 MET3 ATP sulfurylase (sulfate adenylyltransferase) 92.53
PRK05537 568 bifunctional sulfate adenylyltransferase subunit 1 92.29
cd00560 277 PanC Pantoate-beta-alanine ligase. PanC Pantoate-b 90.38
PRK00380 281 panC pantoate--beta-alanine ligase; Reviewed 89.59
KOG2803358 consensus Choline phosphate cytidylyltransferase/P 88.41
PLN02660 284 pantoate--beta-alanine ligase 85.82
PF06787160 UPF0254: Uncharacterised protein family (UPF0254); 85.65
TIGR00018 282 panC pantoate--beta-alanine ligase. This family is 85.35
COG4016165 Uncharacterized protein conserved in archaea [Func 81.94
KOG2803 358 consensus Choline phosphate cytidylyltransferase/P 80.2
>COG1546 CinA Uncharacterized protein (competence- and mitomycin-induced) [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=5.3e-32  Score=234.75  Aligned_cols=144  Identities=22%  Similarity=0.227  Sum_probs=130.2

Q ss_pred             hHHHHHHHHHHHcCCCcEeeeecccHHHHHHHhcCCCCccccccCceeecChHHHHHHhCCCCC-----CCCCHHHHHHH
Q 018839            3 DACIRGVVEAIHASPTQAVVYIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQLLGQIPN-----QFCSQQTAVNM   77 (350)
Q Consensus         3 ~~~~~~~~~~i~~~~~~~~~a~tGgg~~~a~~l~~vpGaS~t~~~~~v~Ys~~~k~~llgv~~~-----g~VS~e~a~~M   77 (350)
                      ++.++.+++.|.+.++++.+||+|.|++++++|+++||||.+|.+|+|+|||++|.++|||+|+     |+||+|||++|
T Consensus         7 ~~la~~v~~~L~~~g~tlatAEScTgGlla~~lt~i~GaS~~f~gg~VtYSneaK~~lLgV~~~tL~~~GaVSe~~a~eM   86 (162)
T COG1546           7 ESLAEAVGELLKERGLTLATAESCTGGLLAAALTDIPGASAVFEGGFVTYSNEAKAKLLGVSPETLEEHGAVSEEVAREM   86 (162)
T ss_pred             hHHHHHHHHHHHHcCCEEEEEecchhHHHHHHHHcCCCcHHHhCCceEEEcHHHHHHHhCCCHHHHHHcCCcCHHHHHHH
Confidence            4678899999999999999998888888999999999999999999999999999999999887     99999999999


Q ss_pred             HHHHHHHHhhhcCCCCCeEEEEecCcccCC---CCCCCCcEEEEEEEeCCeeEEEEEEeCCchhhHHHHHHH--HHHHHH
Q 018839           78 ALLAYNRALKLSRPGAPVLGVGFTGALAST---HPKLGDHRFHLSTRTSDRLWVSTVTLSKGLRTREQEDKV--SSHLLL  152 (350)
Q Consensus        78 A~~a~~~~~~l~~~~~~~~gia~Tg~ag~~---~~k~g~g~~~i~i~~~~~~~~~~~~l~~~~r~~~~~~~l--~~~l~v  152 (350)
                      |.++.+++       .+|+|||+||+|||+   +.|| +|+||+|+.......+++++|.++ |+.+|++++  +..+++
T Consensus        87 A~Ga~~~~-------~ad~aiaiTGiAGP~Gg~~~kp-vGtV~ig~~~~~~~~~~~~~~~g~-R~~vR~~a~~~Al~~l~  157 (162)
T COG1546          87 ARGAKERA-------GADIAIAITGIAGPDGGSEGKP-VGTVYIGLAIGGEAITIRVNFGGD-REQVRERAVRAALELLL  157 (162)
T ss_pred             HHHHHHhc-------CCCEEEEEEEeeCCCCCCCCCC-ceEEEEEEEcCCceEEEEEEcCCC-HHHHHHHHHHHHHHHHH
Confidence            99999986       689999999999995   5577 899999999966678999999998 999999887  555666


Q ss_pred             HHH
Q 018839          153 KAM  155 (350)
Q Consensus       153 ~~i  155 (350)
                      ++|
T Consensus       158 ~~L  160 (162)
T COG1546         158 RLL  160 (162)
T ss_pred             HHh
Confidence            655

>PRK03661 hypothetical protein; Validated Back     alignment and domain information
>PRK03657 hypothetical protein; Validated Back     alignment and domain information
>PF02464 CinA: Competence-damaged protein; InterPro: IPR008136 CinA is the first gene in the competence-inducible (cin) operon, and is thought to be specifically required at some stage in the process of transformation [] Back     alignment and domain information
>TIGR00199 cinA_cterm competence/damage-inducible protein CinA C-terminal domain Back     alignment and domain information
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism] Back     alignment and domain information
>PRK00549 competence damage-inducible protein A; Provisional Back     alignment and domain information
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain Back     alignment and domain information
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional Back     alignment and domain information
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional Back     alignment and domain information
>TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase Back     alignment and domain information
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated Back     alignment and domain information
>cd02165 NMNAT Nicotinamide/nicotinate mononucleotide adenylyltransferase Back     alignment and domain information
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional Back     alignment and domain information
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase Back     alignment and domain information
>cd09286 NMNAT_Eukarya Nicotinamide/nicotinate mononucleotide adenylyltransferase, Eukaryotic Back     alignment and domain information
>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT) Back     alignment and domain information
>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase, bacterial Back     alignment and domain information
>cd02163 PPAT Phosphopantetheine adenylyltransferase Back     alignment and domain information
>PRK03673 hypothetical protein; Provisional Back     alignment and domain information
>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain Back     alignment and domain information
>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional Back     alignment and domain information
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional Back     alignment and domain information
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins Back     alignment and domain information
>PRK00962 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain Back     alignment and domain information
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism] Back     alignment and domain information
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type Back     alignment and domain information
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal Back     alignment and domain information
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain Back     alignment and domain information
>PRK00777 phosphopantetheine adenylyltransferase; Provisional Back     alignment and domain information
>PRK13671 hypothetical protein; Provisional Back     alignment and domain information
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional Back     alignment and domain information
>cd02170 cytidylyltransferase cytidylyltransferase Back     alignment and domain information
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional Back     alignment and domain information
>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase Back     alignment and domain information
>cd02156 nt_trans nucleotidyl transferase superfamily Back     alignment and domain information
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase Back     alignment and domain information
>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain Back     alignment and domain information
>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes Back     alignment and domain information
>cd02171 G3P_Cytidylyltransferase glycerol-3-phosphate cytidylyltransferase Back     alignment and domain information
>KOG3199 consensus Nicotinamide mononucleotide adenylyl transferase [Coenzyme transport and metabolism] Back     alignment and domain information
>cd02169 Citrate_lyase_ligase Citrate lyase ligase Back     alignment and domain information
>cd02174 CCT CTP:phosphocholine cytidylyltransferase Back     alignment and domain information
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT) Back     alignment and domain information
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional Back     alignment and domain information
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional Back     alignment and domain information
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme Back     alignment and domain information
>TIGR00339 sopT ATP sulphurylase Back     alignment and domain information
>cd02172 RfaE_N N-terminal domain of RfaE Back     alignment and domain information
>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function Back     alignment and domain information
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism] Back     alignment and domain information
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional Back     alignment and domain information
>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase Back     alignment and domain information
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II Back     alignment and domain information
>PLN02406 ethanolamine-phosphate cytidylyltransferase Back     alignment and domain information
>COG1019 Predicted nucleotidyltransferase [General function prediction only] Back     alignment and domain information
>PRK13670 hypothetical protein; Provisional Back     alignment and domain information
>PLN02388 phosphopantetheine adenylyltransferase Back     alignment and domain information
>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism] Back     alignment and domain information
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional Back     alignment and domain information
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2 Back     alignment and domain information
>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional Back     alignment and domain information
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed Back     alignment and domain information
>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6 Back     alignment and domain information
>PRK07143 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase Back     alignment and domain information
>COG1323 Predicted nucleotidyltransferase [General function prediction only] Back     alignment and domain information
>PLN02413 choline-phosphate cytidylyltransferase Back     alignment and domain information
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional Back     alignment and domain information
>PLN02406 ethanolamine-phosphate cytidylyltransferase Back     alignment and domain information
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion] Back     alignment and domain information
>COG0196 RibF FAD synthase [Coenzyme metabolism] Back     alignment and domain information
>cd00517 ATPS ATP-sulfurylase Back     alignment and domain information
>PF01747 ATP-sulfurylase: ATP-sulfurylase; InterPro: IPR002650 This entry consists of sulphate adenylyltransferase or ATP-sulfurylase (2 Back     alignment and domain information
>PRK04149 sat sulfate adenylyltransferase; Reviewed Back     alignment and domain information
>KOG3351 consensus Predicted nucleotidyltransferase [General function prediction only] Back     alignment and domain information
>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated Back     alignment and domain information
>cd00560 PanC Pantoate-beta-alanine ligase Back     alignment and domain information
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed Back     alignment and domain information
>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism] Back     alignment and domain information
>PLN02660 pantoate--beta-alanine ligase Back     alignment and domain information
>PF06787 UPF0254: Uncharacterised protein family (UPF0254); InterPro: IPR009625 This is a group of proteins of unknown function Back     alignment and domain information
>TIGR00018 panC pantoate--beta-alanine ligase Back     alignment and domain information
>COG4016 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information
>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query350
2h29_A189 Probable nicotinate-nucleotide adenylyltransferase 3e-07
3h05_A177 Uncharacterized protein VPA0413; nucleotidylyl, tr 4e-07
1kam_A194 Deamido-NAD(+), nicotinate-nucleotide adenylyltran 4e-07
2qtr_A189 Nicotinate (nicotinamide) nucleotide adenylyltran; 7e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
1yum_A242 'probable nicotinate-nucleotide adenylyltransferas 4e-05
3do8_A148 Phosphopantetheine adenylyltransferase; protein wi 4e-05
1k4m_A213 NAMN adenylyltransferase; nucleotidyltransferase; 6e-05
1lw7_A 365 Transcriptional regulator NADR; NMN, NMN adenylyl 5e-04
>2h29_A Probable nicotinate-nucleotide adenylyltransferase; NADD, namnat, nmnat; HET: DND; 2.00A {Staphylococcus aureus} PDB: 2h2a_A* Length = 189 Back     alignment and structure
 Score = 49.1 bits (118), Expect = 3e-07
 Identities = 29/162 (17%), Positives = 50/162 (30%), Gaps = 65/162 (40%)

Query: 214 RKI-ILSGSFNPLHDGHLKL-LEVATRICGNGYPCFEL-------SAVNADKPPLSVSQI 264
           +KI +  G FNP+H  H+ +  EV            +        S ++  K       +
Sbjct: 2   KKIVLYGGQFNPIHTAHMIVASEVFHE--------LQPDEFYFLPSFMSPLKKHHDFIDV 53

Query: 265 KDRVKQFEKVGMTVI-ISNQPYF-------------------------YKKAEFFPGSAF 298
           + R+       M  + I    +                          +K +E +    F
Sbjct: 54  QHRLT------MIQMIIDELGFGDICDDEIKRGGQSYTYDTIKAFKEQHKDSELY----F 103

Query: 299 VIGADTAARLIDPKYYDGDPGKMVEVLSGCKRTGCTFIVAGR 340
           VIG D   +L   K+Y  +      +         TF+V  R
Sbjct: 104 VIGTDQYNQL--EKWYQIE-----YLKE-----MVTFVVVNR 133
>3h05_A Uncharacterized protein VPA0413; nucleotidylyl, transferase, MCSG, midwest center for structu genomics, PSI; 1.65A {Vibrio parahaemolyticus} Length = 177 Back     alignment and structure
>1kam_A Deamido-NAD(+), nicotinate-nucleotide adenylyltransferase; rossman fold; 2.10A {Bacillus subtilis} SCOP: c.26.1.3 PDB: 1kaq_A* Length = 194 Back     alignment and structure
>2qtr_A Nicotinate (nicotinamide) nucleotide adenylyltran; NAD, nucleotidyltransferase, pyridine nucleotide biosynthesi transferase; HET: NXX; 1.70A {Bacillus anthracis} PDB: 3dv2_A 3mla_A* 3hfj_A* 3mlb_A* 3mmx_A* 3e27_A* 2qtn_A* 2qtm_A* Length = 189 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1yum_A 'probable nicotinate-nucleotide adenylyltransferase; alpha/beta domain; HET: CIT NCN; 1.70A {Pseudomonas aeruginosa} PDB: 1yul_A* 1yun_A* Length = 242 Back     alignment and structure
>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown function, structural genomics, MCSG, PSI-2, protein structure initiative; 1.60A {Archaeoglobus fulgidus} Length = 148 Back     alignment and structure
>1k4m_A NAMN adenylyltransferase; nucleotidyltransferase; HET: NAD CIT; 1.90A {Escherichia coli} SCOP: c.26.1.3 PDB: 1k4k_A* Length = 213 Back     alignment and structure
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 Length = 365 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query350
2a9s_A171 Competence/damage-inducible protein CINA; APC5759, 99.97
1yum_A242 'probable nicotinate-nucleotide adenylyltransferas 99.85
2h29_A189 Probable nicotinate-nucleotide adenylyltransferase 99.85
3h05_A177 Uncharacterized protein VPA0413; nucleotidylyl, tr 99.85
1kam_A194 Deamido-NAD(+), nicotinate-nucleotide adenylyltran 99.83
1k4m_A213 NAMN adenylyltransferase; nucleotidyltransferase; 99.81
2qtr_A189 Nicotinate (nicotinamide) nucleotide adenylyltran; 99.81
1nup_A252 FKSG76; NAD biosynthesis, mitochondria, pyridine a 99.78
1kqn_A279 Nmnat, nicotinamide mononucleotide adenylyl transf 99.77
3f3m_A168 Phosphopantetheine adenylyltransferase; PPAT, coen 99.49
3nbk_A177 Phosphopantetheine adenylyltransferase; PPAT, PHP; 99.48
3nd5_A171 Phosphopantetheine adenylyltransferase; PPAT, coen 99.45
1qjc_A158 Phosphopantetheine adenylyltransferase; coenzyme A 99.44
1od6_A160 PPAT, phosphopantetheine adenylyltransferase; coen 99.42
4f3r_A162 Phosphopantetheine adenylyltransferase; phosphopan 99.4
1o6b_A169 Phosphopantetheine adenylyltransferase; structural 99.39
1vlh_A173 Phosphopantetheine adenylyltransferase; TM0741, st 99.3
1coz_A129 Protein (glycerol-3-phosphate cytidylyltransferase 99.3
2qjt_B 352 Nicotinamide-nucleotide adenylyltransferase; two i 99.29
2qjo_A 341 Bifunctional NMN adenylyltransferase/nudix hydrol; 99.27
1ej2_A181 Nicotinamide mononucleotide adenylyltransferase; d 99.25
3nv7_A157 Phosphopantetheine adenylyltransferase; helicobact 99.19
3k9w_A187 Phosphopantetheine adenylyltransferase; niaid, ssg 99.18
1f9a_A168 Hypothetical protein MJ0541; alpha/beta, transfera 99.17
2b7l_A132 Glycerol-3-phosphate cytidylyltransferase; rossman 99.16
3do8_A148 Phosphopantetheine adenylyltransferase; protein wi 99.11
1jhd_A396 Sulfate adenylyltransferase; sulfurylase, APS, che 99.07
1lw7_A 365 Transcriptional regulator NADR; NMN, NMN adenylyl 98.97
3glv_A143 Lipopolysaccharide core biosynthesis protein; stru 98.95
1v47_A349 ATP sulfurylase; product binding complex, zinc, ri 98.88
3hl4_A236 Choline-phosphate cytidylyltransferase A; rossmann 98.55
3elb_A341 Ethanolamine-phosphate cytidylyltransferase; kenne 98.41
3elb_A 341 Ethanolamine-phosphate cytidylyltransferase; kenne 98.19
2x0k_A 338 Riboflavin biosynthesis protein RIBF; riboflavin k 97.93
1mrz_A 293 Riboflavin kinase/FMN adenylyltransferase; rossman 97.65
3gmi_A 357 UPF0348 protein MJ0951; protein with unknown funct 97.56
3op1_A 308 Macrolide-efflux protein; structural genomics, PSI 96.84
2ejc_A 280 Pantoate--beta-alanine ligase; X-RAY diffraction, 95.78
1r6x_A395 ATP:sulfate adenylyltransferase; APS kinase-like d 94.61
2gks_A 546 Bifunctional SAT/APS kinase; transferase, sulfuryl 94.46
1g8f_A 511 Sulfate adenylyltransferase; alpha-beta protein, b 93.85
1m8p_A 573 Sulfate adenylyltransferase; rossmann fold, phosph 93.42
1x6v_B630 Bifunctional 3'-phosphoadenosine 5'- phosphosulfat 89.9
3ag6_A 283 Pantothenate synthetase; ATP-dependent enzyme, ATP 89.89
1v8f_A 276 Pantoate-beta-alanine ligase; rossmann fold, dimer 87.57
3cr8_A 552 Sulfate adenylyltranferase, adenylylsulfate kinase 87.2
3cov_A 301 Pantothenate synthetase; pantothenate biosynthesis 85.86
>2a9s_A Competence/damage-inducible protein CINA; APC5759, ATC1417, MCSG, protei structure initiative; 1.75A {Agrobacterium tumefaciens} SCOP: c.51.5.1 Back     alignment and structure
Probab=99.97  E-value=5.1e-30  Score=225.62  Aligned_cols=142  Identities=21%  Similarity=0.208  Sum_probs=125.6

Q ss_pred             HHHHHHHHHHHcCCCcEeeeecccHHHHHHHhcCCCCccccccCceeecChHHHHHHhCCCCC-----CCCCHHHHHHHH
Q 018839            4 ACIRGVVEAIHASPTQAVVYIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQLLGQIPN-----QFCSQQTAVNMA   78 (350)
Q Consensus         4 ~~~~~~~~~i~~~~~~~~~a~tGgg~~~a~~l~~vpGaS~t~~~~~v~Ys~~~k~~llgv~~~-----g~VS~e~a~~MA   78 (350)
                      .+.+.+++.|.+++++|.+||++.|++++++|+++||||.+|.+|+|+|+|++|.++|||+++     |+||+|+|++||
T Consensus        12 ~l~~~v~~~L~~~~~tla~AEScTGGlla~~lt~vpGaS~~f~gG~VtYsn~~K~~lLgV~~~~L~~~GaVS~evA~~MA   91 (171)
T 2a9s_A           12 ELARRIITDFTPLGLMVSTAESCTGGLIAGALTEIAGSSAVVDRGFVTYTNDAKRDMLGVGTETLTTFGAVSRQTALQMA   91 (171)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEESTTTTHHHHHHTTSTTGGGTEEEEEEECSHHHHHHHHCCCHHHHHHHCSSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCeEEEeHHhhHHHHHHHHHhCCCchhhcCCeEEecCHHHHHHHcCCCHHHHHhcCCCCHHHHHHHH
Confidence            356788999999999999998777777999999999999999999999999999999999876     999999999999


Q ss_pred             HHHHHHHhhhcCCCCCeEEEEecCcccCC---CCCCCCcEEEEEEEeCCe-eEEEEEEe-CCchhhHHHHHHHHHHHHHH
Q 018839           79 LLAYNRALKLSRPGAPVLGVGFTGALAST---HPKLGDHRFHLSTRTSDR-LWVSTVTL-SKGLRTREQEDKVSSHLLLK  153 (350)
Q Consensus        79 ~~a~~~~~~l~~~~~~~~gia~Tg~ag~~---~~k~g~g~~~i~i~~~~~-~~~~~~~l-~~~~r~~~~~~~l~~~l~v~  153 (350)
                      +++++++       .+|+|||+||++||+   .+|| +|+||+|+..+++ .++.+++| .++ |+.++++++  ...++
T Consensus        92 ~ga~~~~-------~ad~avavTGiAGP~g~~~~kp-vGtV~ia~a~~~~~~~~~~~~f~~g~-R~~ir~~a~--~~AL~  160 (171)
T 2a9s_A           92 HGALYRS-------RANFAVAVTGIAGPGGGSAEKP-VGLVHLATKARNGNVLHHEMRYGDIG-RTEIRLATV--RTALE  160 (171)
T ss_dssp             HHHHHTS-------SCSEEEEEEECCSSSCCCSSSC-TTEEEEEEEETTSCEEEEEEECCSCC-HHHHHHHHH--HHHHH
T ss_pred             HhHHHHh-------CCCEEEEEeecCCCCCCCCCCC-CcEEEEEEEeCCCCEEEEEEECCCCC-HHHHHHHHH--HHHHH
Confidence            9999974       689999999999994   4577 8999999999877 78999999 776 999999887  44444


Q ss_pred             HHH
Q 018839          154 AMA  156 (350)
Q Consensus       154 ~i~  156 (350)
                      +|.
T Consensus       161 ~L~  163 (171)
T 2a9s_A          161 MLI  163 (171)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443
>1yum_A 'probable nicotinate-nucleotide adenylyltransferase; alpha/beta domain; HET: CIT NCN; 1.70A {Pseudomonas aeruginosa} PDB: 1yul_A* 1yun_A* Back     alignment and structure
>2h29_A Probable nicotinate-nucleotide adenylyltransferase; NADD, namnat, nmnat; HET: DND; 2.00A {Staphylococcus aureus} PDB: 2h2a_A* Back     alignment and structure
>3h05_A Uncharacterized protein VPA0413; nucleotidylyl, transferase, MCSG, midwest center for structu genomics, PSI; 1.65A {Vibrio parahaemolyticus} Back     alignment and structure
>1kam_A Deamido-NAD(+), nicotinate-nucleotide adenylyltransferase; rossman fold; 2.10A {Bacillus subtilis} SCOP: c.26.1.3 PDB: 1kaq_A* Back     alignment and structure
>1k4m_A NAMN adenylyltransferase; nucleotidyltransferase; HET: NAD CIT; 1.90A {Escherichia coli} SCOP: c.26.1.3 PDB: 1k4k_A* Back     alignment and structure
>2qtr_A Nicotinate (nicotinamide) nucleotide adenylyltran; NAD, nucleotidyltransferase, pyridine nucleotide biosynthesi transferase; HET: NXX; 1.70A {Bacillus anthracis} PDB: 3dv2_A 3mla_A* 3hfj_A* 3mlb_A* 3mmx_A* 3e27_A* 2qtn_A* 2qtm_A* Back     alignment and structure
>1nup_A FKSG76; NAD biosynthesis, mitochondria, pyridine adenylyltransferase catalysis, transferase; HET: NMN; 1.90A {Homo sapiens} SCOP: c.26.1.3 PDB: 1nuq_A* 1nur_A 1nus_A* 1nut_A* 1nuu_A* Back     alignment and structure
>1kqn_A Nmnat, nicotinamide mononucleotide adenylyl transferase; nucleotidyltransferase superfamily; HET: NAD; 2.20A {Homo sapiens} SCOP: c.26.1.3 PDB: 1kqo_A* 1kr2_A* 1kku_A 1gzu_A* Back     alignment and structure
>3f3m_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway, coenzyme A biosynthesis, nucleotidyltransferase; HET: PPS; 2.40A {Staphylococcus aureus} SCOP: c.26.1.0 Back     alignment and structure
>3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A {Mycobacterium tuberculosis} PDB: 3nba_A* 3pnb_A* 4e1a_A 3lcj_A 3rba_A* 1tfu_A* 3rff_A 3rhs_A* 3uc5_A* Back     alignment and structure
>3nd5_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway; 2.30A {Enterococcus faecalis} SCOP: c.26.1.0 PDB: 3nd6_A* 3nd7_A* Back     alignment and structure
>1qjc_A Phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.64A {Escherichia coli} SCOP: c.26.1.3 PDB: 1h1t_A* 1gn8_A* 1b6t_A* 3l92_A* 3l93_A Back     alignment and structure
>1od6_A PPAT, phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.5A {Thermus thermophilus} SCOP: c.26.1.3 Back     alignment and structure
>4f3r_A Phosphopantetheine adenylyltransferase; phosphopantetheine adenylyltranferase; 2.25A {Coxiella burnetii} Back     alignment and structure
>1o6b_A Phosphopantetheine adenylyltransferase; structural genomics; HET: ADP; 2.20A {Bacillus subtilis} SCOP: c.26.1.3 Back     alignment and structure
>1vlh_A Phosphopantetheine adenylyltransferase; TM0741, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: PNS; 2.20A {Thermotoga maritima} SCOP: c.26.1.3 Back     alignment and structure
>1coz_A Protein (glycerol-3-phosphate cytidylyltransferase); HET: CTP; 2.00A {Bacillus subtilis} SCOP: c.26.1.2 PDB: 1n1d_A* Back     alignment and structure
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B Back     alignment and structure
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP} Back     alignment and structure
>1ej2_A Nicotinamide mononucleotide adenylyltransferase; dinucleotide binding fold, structural genomics, PSI; HET: NAD; 1.90A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.26.1.3 PDB: 1m8g_A* 1hyb_A* 1m8j_A* 1m8f_A* 1m8k_A* Back     alignment and structure
>3nv7_A Phosphopantetheine adenylyltransferase; helicobacter pylori 26695 strain, mutant I4V/N76Y, phosphopa adenylyltransferase; 1.75A {Helicobacter pylori} PDB: 3otw_A* Back     alignment and structure
>3k9w_A Phosphopantetheine adenylyltransferase; niaid, ssgcid, seattle structural genomics center for infect disease, coenzyme A, COA; HET: 4PS ADE PG4; 1.60A {Burkholderia pseudomallei} PDB: 3ikz_A* 3pxu_A* Back     alignment and structure
>1f9a_A Hypothetical protein MJ0541; alpha/beta, transferase, structural genomics; HET: ATP; 2.00A {Methanocaldococcus jannaschii} SCOP: c.26.1.3 Back     alignment and structure
>2b7l_A Glycerol-3-phosphate cytidylyltransferase; rossmann fold; 3.00A {Staphylococcus aureus} Back     alignment and structure
>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown function, structural genomics, MCSG, PSI-2, protein structure initiative; 1.60A {Archaeoglobus fulgidus} Back     alignment and structure
>1jhd_A Sulfate adenylyltransferase; sulfurylase, APS, chemoautotroph, bromide; 1.70A {Sulfur-oxidizing endosymbiont ofriftia pachyptila} SCOP: b.122.1.3 c.26.1.5 Back     alignment and structure
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 Back     alignment and structure
>3glv_A Lipopolysaccharide core biosynthesis protein; structural GEN PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1} Back     alignment and structure
>1v47_A ATP sulfurylase; product binding complex, zinc, riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; HET: ADX; 2.49A {Thermus thermophilus} SCOP: b.122.1.3 c.26.1.5 Back     alignment and structure
>3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold, phospholipid synthesis, phosphatidylcholine, phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A {Rattus norvegicus} Back     alignment and structure
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens} Back     alignment and structure
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens} Back     alignment and structure
>2x0k_A Riboflavin biosynthesis protein RIBF; riboflavin kinase, nucleotide-binding, transferase, ATP-BIND multifunctional enzyme; 1.95A {Corynebacterium ammoniagenes} Back     alignment and structure
>1mrz_A Riboflavin kinase/FMN adenylyltransferase; rossmann fold, flavin binding domain, 6-stranded beta barrel nucleotide binding domain; HET: CIT; 1.90A {Thermotoga maritima} SCOP: b.43.5.1 c.26.1.3 PDB: 1s4m_A* 1t6x_A* 1t6y_A* 1t6z_A* 2i1l_A Back     alignment and structure
>3gmi_A UPF0348 protein MJ0951; protein with unknown function, structural genomics, PSI, MCS protein structure initiative; 1.91A {Methanocaldococcus jannaschii} Back     alignment and structure
>3op1_A Macrolide-efflux protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PEG; 2.49A {Streptococcus pneumoniae} Back     alignment and structure
>2ejc_A Pantoate--beta-alanine ligase; X-RAY diffraction, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Thermotoga maritima} Back     alignment and structure
>1r6x_A ATP:sulfate adenylyltransferase; APS kinase-like domain; 1.40A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 Back     alignment and structure
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus} Back     alignment and structure
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A* Back     alignment and structure
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A* Back     alignment and structure
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A* Back     alignment and structure
>3ag6_A Pantothenate synthetase; ATP-dependent enzyme, ATP-binding, nucleotide-binding, pantothenate biosynthesis; HET: PAJ PG4; 1.85A {Staphylococcus aureus} PDB: 3ag5_A* 2x3f_A* Back     alignment and structure
>1v8f_A Pantoate-beta-alanine ligase; rossmann fold, dimer, structural genomics, riken STR genomics/proteomics initiative, RSGI; HET: P6G; 1.90A {Thermus thermophilus} SCOP: c.26.1.4 PDB: 1ufv_A Back     alignment and structure
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} Back     alignment and structure
>3cov_A Pantothenate synthetase; pantothenate biosynthesis, enzym ligase, drug design, ATP-binding, magnesium, metal-binding; 1.50A {Mycobacterium tuberculosis} SCOP: c.26.1.4 PDB: 3cow_A* 3coy_A* 3coz_A* 3imc_A* 3ime_A* 3img_A* 3iob_A* 3ioc_A* 3iod_A* 3ioe_A* 3iub_A* 3iue_A* 3ivc_A* 3ivg_A* 3ivx_A* 2a84_A* 1n2b_A* 1n2e_A* 1n2g_A* 1n2h_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 350
d1lw7a1163 c.26.1.3 (A:57-219) Transcriptional regulator NadR 6e-06
d1kama_189 c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) ad 7e-05
d1k4ma_213 c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) ad 1e-04
d1coza_126 c.26.1.2 (A:) CTP:glycerol-3-phosphate cytidylyltr 2e-04
d1od6a_160 c.26.1.3 (A:) Phosphopantetheine adenylyltransfera 2e-04
d1ej2a_167 c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) ad 2e-04
d1f9aa_164 c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) ad 3e-04
d1vlha_157 c.26.1.3 (A:) Phosphopantetheine adenylyltransfera 5e-04
d1qjca_157 c.26.1.3 (A:) Phosphopantetheine adenylyltransfera 0.001
d1nuua_233 c.26.1.3 (A:) Cytosolic NMN/NAMN adenylyltransfera 0.001
d1kr2a_ 271 c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) ad 0.003
d1o6ba_163 c.26.1.3 (A:) Phosphopantetheine adenylyltransfera 0.003
d1tfua_157 c.26.1.3 (A:) Phosphopantetheine adenylyltransfera 0.003
>d1lw7a1 c.26.1.3 (A:57-219) Transcriptional regulator NadR, NMN-adenylyltransferase domain {Haemophilus influenzae [TaxId: 727]} Length = 163 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Adenylyltransferase
domain: Transcriptional regulator NadR, NMN-adenylyltransferase domain
species: Haemophilus influenzae [TaxId: 727]

 Score = 43.6 bits (102), Expect = 6e-06
 Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 8/77 (10%)

Query: 212 EERKIILSGSFNPLHDGHLKLLEVATRIC--------GNGYPCFELSAVNADKPPLSVSQ 263
           E++  ++ G F P+H GH+ ++  A             +     +L   +  K   +V  
Sbjct: 1   EKKVGVIFGKFYPVHTGHINMIYEAFSKVDELHVIVCSDTVRDLKLFYDSKMKRMPTVQD 60

Query: 264 IKDRVKQFEKVGMTVII 280
               ++Q  K     I 
Sbjct: 61  RLRWMQQIFKYQKNQIF 77
>d1kama_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Bacillus subtilis [TaxId: 1423]} Length = 189 Back     information, alignment and structure
>d1k4ma_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Escherichia coli [TaxId: 562]} Length = 213 Back     information, alignment and structure
>d1coza_ c.26.1.2 (A:) CTP:glycerol-3-phosphate cytidylyltransferase {Bacillus subtilis [TaxId: 1423]} Length = 126 Back     information, alignment and structure
>d1od6a_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Thermus thermophilus [TaxId: 274]} Length = 160 Back     information, alignment and structure
>d1ej2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 167 Back     information, alignment and structure
>d1f9aa_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 164 Back     information, alignment and structure
>d1vlha_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Thermotoga maritima [TaxId: 2336]} Length = 157 Back     information, alignment and structure
>d1qjca_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Escherichia coli [TaxId: 562]} Length = 157 Back     information, alignment and structure
>d1nuua_ c.26.1.3 (A:) Cytosolic NMN/NAMN adenylyltransferase {Human (Homo sapiens), FKSG76 [TaxId: 9606]} Length = 233 Back     information, alignment and structure
>d1kr2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 271 Back     information, alignment and structure
>d1o6ba_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Bacillus subtilis [TaxId: 1423]} Length = 163 Back     information, alignment and structure
>d1tfua_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 157 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query350
d2a9sa1167 Competence/damage-inducible protein CinA {Agrobact 99.96
d1nuua_233 Cytosolic NMN/NAMN adenylyltransferase {Human (Hom 99.81
d1kr2a_271 Nicotinamide mononucleotide (NMN) adenylyltransfer 99.8
d1k4ma_213 Nicotinamide mononucleotide (NMN) adenylyltransfer 99.77
d1kama_189 Nicotinamide mononucleotide (NMN) adenylyltransfer 99.66
d1jhda2223 ATP sulfurylase catalytic domain {Sulfur-oxidizing 99.56
d1qjca_157 Phosphopantetheine adenylyltransferase {Escherichi 99.22
d1o6ba_163 Phosphopantetheine adenylyltransferase {Bacillus s 99.22
d1ej2a_167 Nicotinamide mononucleotide (NMN) adenylyltransfer 99.17
d1tfua_157 Phosphopantetheine adenylyltransferase {Mycobacter 99.17
d1od6a_160 Phosphopantetheine adenylyltransferase {Thermus th 99.14
d1f9aa_164 Nicotinamide mononucleotide (NMN) adenylyltransfer 99.13
d1lw7a1163 Transcriptional regulator NadR, NMN-adenylyltransf 99.11
d1vlha_157 Phosphopantetheine adenylyltransferase {Thermotoga 99.1
d1coza_126 CTP:glycerol-3-phosphate cytidylyltransferase {Bac 98.66
d1mrza2157 FMN adenylyltransferase domain of bifunctional FAD 96.75
d1g8fa2221 ATP sulfurylase catalytic domain {Baker's yeast (S 95.81
d1x6va2235 ATP sulfurylase catalytic domain {Human (Homo sapi 95.2
d1v47a2214 ATP sulfurylase catalytic domain {Thermus thermoph 94.99
>d2a9sa1 c.51.5.1 (A:1-167) Competence/damage-inducible protein CinA {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: CinA-like
family: CinA-like
domain: Competence/damage-inducible protein CinA
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.96  E-value=1.2e-29  Score=220.82  Aligned_cols=145  Identities=20%  Similarity=0.165  Sum_probs=124.3

Q ss_pred             hHHHHHHHHHHHcCCCcEeeeecccHHHHHHHhcCCCCccccccCceeecChHHHHHHhCCCCC-----CCCCHHHHHHH
Q 018839            3 DACIRGVVEAIHASPTQAVVYIAGGASQALGMLMSIPGATNTVLEAVVPYSRMSMIQLLGQIPN-----QFCSQQTAVNM   77 (350)
Q Consensus         3 ~~~~~~~~~~i~~~~~~~~~a~tGgg~~~a~~l~~vpGaS~t~~~~~v~Ys~~~k~~llgv~~~-----g~VS~e~a~~M   77 (350)
                      ++.++.+++.|.+++++|++||++.|++++++|+++||||++|.+|+|+|++++|.++||++++     |+||+|+|.+|
T Consensus         9 ~~l~~~v~~~L~~~~~tia~aES~TGGlia~~lt~vpGaS~~f~gg~V~Ys~~~K~~~Lgv~~~~i~~~g~vS~evA~~M   88 (167)
T d2a9sa1           9 EELARRIITDFTPLGLMVSTAESCTGGLIAGALTEIAGSSAVVDRGFVTYTNDAKRDMLGVGTETLTTFGAVSRQTALQM   88 (167)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEESTTTTHHHHHHTTSTTGGGTEEEEEEECSHHHHHHHHCCCHHHHHHHCSSSHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCEEEEeecccchHHHHHHHccccchhhhcCeecchhhhHHHhHhcCcHhhhccCCCccHHHHHHH
Confidence            5778899999999999999998877778999999999999999999999999999999999876     99999999999


Q ss_pred             HHHHHHHHhhhcCCCCCeEEEEecCcccCC---CCCCCCcEEEEEEEeCCeeEEEEEE-eCCchhhHHHHHHH--HHHHH
Q 018839           78 ALLAYNRALKLSRPGAPVLGVGFTGALAST---HPKLGDHRFHLSTRTSDRLWVSTVT-LSKGLRTREQEDKV--SSHLL  151 (350)
Q Consensus        78 A~~a~~~~~~l~~~~~~~~gia~Tg~ag~~---~~k~g~g~~~i~i~~~~~~~~~~~~-l~~~~r~~~~~~~l--~~~l~  151 (350)
                      |++++++.       .+|++||+||.|||+   ..|| +|+||||+.++++..+.+.. +.++.|+.++++++  +..++
T Consensus        89 A~g~~~~~-------~adiaia~TG~AGP~~~~~~kp-vG~V~iai~~~~~~~~~~~~~~~~~~R~~ir~~av~~aL~~L  160 (167)
T d2a9sa1          89 AHGALYRS-------RANFAVAVTGIAGPGGGSAEKP-VGLVHLATKARNGNVLHHEMRYGDIGRTEIRLATVRTALEML  160 (167)
T ss_dssp             HHHHHHTS-------SCSEEEEEEECCSSSCCCSSSC-TTEEEEEEEETTSCEEEEEEECCSCCHHHHHHHHHHHHHHHH
T ss_pred             HcCchhhc-------ccceeeeecccccCCCCCCCCC-CcEEEEEEEeCCCeEEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence            99999974       689999999999994   3355 79999999998886655544 43333888888887  44556


Q ss_pred             HHHH
Q 018839          152 LKAM  155 (350)
Q Consensus       152 v~~i  155 (350)
                      ++++
T Consensus       161 l~l~  164 (167)
T d2a9sa1         161 IALN  164 (167)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6554
>d1nuua_ c.26.1.3 (A:) Cytosolic NMN/NAMN adenylyltransferase {Human (Homo sapiens), FKSG76 [TaxId: 9606]} Back     information, alignment and structure
>d1kr2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k4ma_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kama_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1jhda2 c.26.1.5 (A:174-396) ATP sulfurylase catalytic domain {Sulfur-oxidizing endosymbiont of Riftia pachyptila [TaxId: 35843]} Back     information, alignment and structure
>d1qjca_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1o6ba_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1ej2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1tfua_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1od6a_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1f9aa_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1lw7a1 c.26.1.3 (A:57-219) Transcriptional regulator NadR, NMN-adenylyltransferase domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1vlha_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1coza_ c.26.1.2 (A:) CTP:glycerol-3-phosphate cytidylyltransferase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1mrza2 c.26.1.3 (A:2-158) FMN adenylyltransferase domain of bifunctional FAD synthetase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1g8fa2 c.26.1.5 (A:169-389) ATP sulfurylase catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1x6va2 c.26.1.5 (A:390-624) ATP sulfurylase catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v47a2 c.26.1.5 (A:136-349) ATP sulfurylase catalytic domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure