Citrus Sinensis ID: 018858
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 349 | 2.2.26 [Sep-21-2011] | |||||||
| Q9DB94 | 358 | WD repeat-containing prot | yes | no | 0.813 | 0.793 | 0.235 | 3e-15 | |
| Q32KQ2 | 358 | WD repeat-containing prot | yes | no | 0.799 | 0.779 | 0.239 | 1e-13 | |
| Q7Z5U6 | 358 | WD repeat-containing prot | yes | no | 0.813 | 0.793 | 0.236 | 2e-13 | |
| Q54BI5 | 368 | WD repeat-containing prot | yes | no | 0.412 | 0.391 | 0.331 | 3e-13 | |
| Q8JZX3 | 405 | POC1 centriolar protein h | no | no | 0.693 | 0.597 | 0.239 | 0.0002 | |
| Q8NBT0 | 407 | POC1 centriolar protein h | no | no | 0.684 | 0.587 | 0.234 | 0.0004 | |
| Q7ZVF0 | 416 | POC1 centriolar protein h | no | no | 0.679 | 0.569 | 0.219 | 0.0007 |
| >sp|Q9DB94|WDR53_MOUSE WD repeat-containing protein 53 OS=Mus musculus GN=Wdr53 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 94/400 (23%), Positives = 149/400 (37%), Gaps = 116/400 (29%)
Query: 13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNED 72
GH ++ C A++D G VAS GE G + + + + G VTS+ F +
Sbjct: 8 GHSSSILCLNANKD--GLVASGGEGGDLVAWGEDGTPLGHMQLEGADDVTSVLFSASCPT 65
Query: 73 IIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDI 132
+Y S G+ + DV L+ ++ N+EEIN + N S LA ADD G +KI+D+
Sbjct: 66 KLYASHGETISVLDVRSLKG--SLDHFHVNEEEINCLSLNETESLLASADDSGAIKILDL 123
Query: 133 RQHCLYKSLRAGHSSICSSVQFIPWKPWE----GL------------------------- 163
+ + +SL+ HS+ICSSV F P +P GL
Sbjct: 124 EKKKVTRSLKR-HSNICSSVAFRPQRPQSLVSCGLDMQVMLWSLQKARPVWITNLQEDET 182
Query: 164 --PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK 221
E G+ NPA H++++ I DG V + +
Sbjct: 183 EETEGPQTPGRLLNPALAHSVSVASC------GNIFSCGAEDGKVRIFRVM--------- 227
Query: 222 STTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKY 281
G + + GHT S V F
Sbjct: 228 -----------------------------GVKCERELGFKGHTLGVSQVCFL---PESSL 255
Query: 282 LISGGNDKLVKVWDC-------------------------------SRFQGVQTSINNDL 310
L++GGND +++WD SR G + + +
Sbjct: 256 LLTGGNDGRIRLWDVSGKMEKLQKSPARHIHRKKAKRAACPTQGGNSRAPGAEDEGHAKI 315
Query: 311 LIK-NINLNKKVNWLCTTPTE-SENLVVCDTSKVVKVYSI 348
L K +I +KVNWL +T + +++++V D + V VY +
Sbjct: 316 LPKLDIEHGEKVNWLLSTKIKGNKSILVADQTSCVSVYPL 355
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Mus musculus (taxid: 10090) |
| >sp|Q32KQ2|WDR53_BOVIN WD repeat-containing protein 53 OS=Bos taurus GN=WDR53 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 97/405 (23%), Positives = 153/405 (37%), Gaps = 126/405 (31%)
Query: 13 GHKATATCCIASRDRPGFVASSGEDG-CICWFDLRSKDVQLVTDV---GNGPVTSLCFKS 68
GH + C AS++ G VAS E G + W +D L+ G VT++ F
Sbjct: 8 GHSSPILCLNASQE--GLVASGAEGGDLVVW----GEDGTLLGHTCFQGAEDVTNVLFSP 61
Query: 69 GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVK 128
+Y S G+ + DV + PL+ ++ N+EEIN + N + LA ADD G +K
Sbjct: 62 SCPTKLYASHGETISILDVR--SLKEPLDDFHVNEEEINCLSLNETENLLASADDSGTIK 119
Query: 129 IIDIRQHCLYKSLRAGHSSICSSVQFIPWKP--------------W---EGLP------- 164
I+D+ + +SL+ HS+ICSSV F P +P W + P
Sbjct: 120 ILDLENKKISRSLKR-HSNICSSVAFRPQRPQSLVSCGLDMQVMLWNLRKARPLWITNLQ 178
Query: 165 -------ENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI 217
E+ + GQ NPA H++++ + DG V + +
Sbjct: 179 EDETEEMESPQSPGQLLNPALAHSVSVASC------GNVFSCGAEDGKVRIFRVM----- 227
Query: 218 SRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGE 277
G + + GH+ S V F
Sbjct: 228 ---------------------------------GVKCEQELGFKGHSLGVSQVCFL---- 250
Query: 278 RGKY-LISGGNDKLVKVWDCS--------------------------RFQGVQTSINND- 309
R Y L++GGND +K+WD S + G S+ +
Sbjct: 251 RESYLLLTGGNDGKIKLWDVSSEIEKKHKSPTKHTHRKKTKRAAYTKQGGGTHASVTGED 310
Query: 310 ----LLIK-NINLNKKVNWLCTTPTES-ENLVVCDTSKVVKVYSI 348
+L K +I +KVNWL +T + N++V D + + VY +
Sbjct: 311 EHGKILPKLSIEHGEKVNWLLSTKIKGYRNILVADQTSCISVYPL 355
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Bos taurus (taxid: 9913) |
| >sp|Q7Z5U6|WDR53_HUMAN WD repeat-containing protein 53 OS=Homo sapiens GN=WDR53 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 95/402 (23%), Positives = 147/402 (36%), Gaps = 118/402 (29%)
Query: 13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNED 72
GH + C AS++ G +AS E G + + + G VTS+ F
Sbjct: 8 GHSSPVLCLNASKE--GLLASGAEGGDLTAWGEDGTPLGHTRFQGADDVTSVLFSPSCPT 65
Query: 73 IIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDI 132
+Y S G+ + DV L+ ++ N+EEIN + N + LA ADD G +KI+D+
Sbjct: 66 KLYASHGETISVLDVRSLKD--SLDHFHVNEEEINCLSLNQTENLLASADDSGAIKILDL 123
Query: 133 RQHCLYKSLRAGHSSICSSVQFIPWKP--------------W---EGLP----------- 164
+ +SL+ HS+ICSSV F P +P W + P
Sbjct: 124 ENKKVIRSLKR-HSNICSSVAFRPQRPQSLVSCGLDMQVMLWSLQKARPLWITNLQEDET 182
Query: 165 ---ENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK 221
E + GQ NPA H+I++ I DG V + +
Sbjct: 183 EEMEGPQSPGQLLNPALAHSISVASC------GNIFSCGAEDGKVRIFRVM--------- 227
Query: 222 STTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKY 281
G + + GHT+ S V F
Sbjct: 228 -----------------------------GVKCEQELGFKGHTSGVSQVCFL---PESYL 255
Query: 282 LISGGNDKLVKVWD-------------------------CSRFQGVQTSIN--------N 308
L++GGND + +WD C++ QG T+ + N
Sbjct: 256 LLTGGNDGKITLWDANSEVEKKQKSPTKRTHRKKPKRGTCTK-QGGNTNASVTDEEEHGN 314
Query: 309 DLLIKNINLNKKVNWLCTTPTES-ENLVVCDTSKVVKVYSIS 349
L NI +KVNWL T + +N++V D + + VY ++
Sbjct: 315 ILPKLNIEHGEKVNWLLGTKIKGHQNILVADQTSCISVYPLN 356
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Homo sapiens (taxid: 9606) |
| >sp|Q54BI5|WDR53_DICDI WD repeat-containing protein 53 homolog OS=Dictyostelium discoideum GN=wdr53 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 81/151 (53%), Gaps = 7/151 (4%)
Query: 10 RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRS-KDVQLVTDVGNG-PVTSLCFK 67
+L GHK T CI+S ++ +AS +D + +DL + K +Q + + G PV ++CF
Sbjct: 24 KLIGHKDTV-LCISSHNKKEIIASGSDDCTVRIWDLNTNKSIQSIVEGFQGNPVNNVCF- 81
Query: 68 SGNEDIIYVSSGKEVKSFDVHMP-ASWRPLES-YNYNKEEINQIVCNPKSSFLACADDGG 125
+ +Y S + SFD+ P + + Y +N EEINQ+ + K +LA DD G
Sbjct: 82 -DQDFTLYCSYDNIIVSFDLRQPNVILKEFNTQYKFNTEEINQLSFDSKYQYLAACDDSG 140
Query: 126 DVKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156
KIID+ ++ L +SL H++I + F P
Sbjct: 141 QTKIIDVTKNKLVESLNKKHTNIATGCVFRP 171
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Dictyostelium discoideum (taxid: 44689) |
| >sp|Q8JZX3|POC1A_MOUSE POC1 centriolar protein homolog A OS=Mus musculus GN=Poc1a PE=2 SV=2 | Back alignment and function description |
|---|
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 71/296 (23%), Positives = 115/296 (38%), Gaps = 54/296 (18%)
Query: 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSL 64
+++ R GHK TC S +AS D + + K V V S+
Sbjct: 51 QSRAYRFTGHKDAVTCVNFS-PSGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSV 109
Query: 65 CFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVC---NPKSSFLACA 121
F S + ++ S K VK + H R L S + IN + C +P + A
Sbjct: 110 HFCSDGQSLVTASDDKTVKVWSTHRQ---RFLFSLT---QHINWVRCAKFSPDGRLIVSA 163
Query: 122 DDGGDVKIID-IRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFV- 179
D VK+ D + C++ H + V F P +G C A +
Sbjct: 164 SDDKTVKLWDKTSRECIHSYCE--HGGFVTYVDFHP-------------SGTCIAAAGMD 208
Query: 180 HAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNI 238
+ + + DA +T+++ + V+ ++ N + S+
Sbjct: 209 NTVKVWDA----RTHRLLQHYQLHSAAVNALSFHPSGNYLITASS--------------- 249
Query: 239 RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 294
D+ ++ILD G+ L Y++ GH A+ VAFS GE Y SGG+D+ V VW
Sbjct: 250 -DSTLKILDLMEGRLL---YTLHGHQGPATTVAFSRTGE---YFASGGSDEQVMVW 298
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Mus musculus (taxid: 10090) |
| >sp|Q8NBT0|POC1A_HUMAN POC1 centriolar protein homolog A OS=Homo sapiens GN=POC1A PE=1 SV=2 | Back alignment and function description |
|---|
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 70/299 (23%), Positives = 107/299 (35%), Gaps = 60/299 (20%)
Query: 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSL 64
+++ R GHK TC S +AS D + + K V V S+
Sbjct: 51 QSRAYRFTGHKDAVTCVNFSPSG-HLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSV 109
Query: 65 CFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVC---NPKSSFLACA 121
F S + + S K VK + H L + IN + C +P + A
Sbjct: 110 HFCSDGQSFVTASDDKTVKVWATHRQKFLFSLS------QHINWVRCAKFSPDGRLIVSA 163
Query: 122 DDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHA 181
D VK+ D KS R S C F+ + ++P+
Sbjct: 164 SDDKTVKLWD-------KSSRECVHSYCEHGGFVTYVD--------------FHPS---- 198
Query: 182 IAIPDADMLDKTNKICVVAKG-DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNI-- 238
C+ A G D V V ++ + + + + + G N
Sbjct: 199 -------------GTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNGLSFHPSGNYLI 245
Query: 239 ---RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 294
D+ ++ILD G+ L Y++ GH A+ VAFS GE Y SGG+D+ V VW
Sbjct: 246 TASSDSTLKILDLMEGRLL---YTLHGHQGPATTVAFSRTGE---YFASGGSDEQVMVW 298
|
Homo sapiens (taxid: 9606) |
| >sp|Q7ZVF0|POC1A_DANRE POC1 centriolar protein homolog A OS=Danio rerio GN=poc1a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 66/301 (21%), Positives = 109/301 (36%), Gaps = 64/301 (21%)
Query: 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSL 64
+++ R GHK TC S +ASS D + + K ++ G V S+
Sbjct: 50 QSRAYRFTGHKDAVTCVQFS-PSAHLLASSSRDKTVRLWVPSVKGESVLFRAHTGSVRSV 108
Query: 65 CFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVC---NPKSSFLACA 121
CF + + ++ S + +K + VH L +N N + C +P +
Sbjct: 109 CFSADGQSLLTASDDQSIKLWSVHRQKIICTLREHN------NWVRCARFSPDGQLMVSV 162
Query: 122 DDGGDVKIIDIRQHCLYKSL--RAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFV 179
D VK+ D L + G+SS V F P
Sbjct: 163 SDDRTVKLWDASSRQLIHTFCEPGGYSSY---VDFHP----------------------- 196
Query: 180 HAIAIPDADMLDKTNKICV-VAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVN- 237
+ C+ A D V V +I + + + + + N
Sbjct: 197 --------------SSTCIATASSDNTVRVWDIRTHTLLQHYQVHSAAVNALSFHPSGNH 242
Query: 238 ----IRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKV 293
D+ ++ILD G+ L Y++ GH +ASCV+FS G++ S G+D+ V V
Sbjct: 243 LLTASSDSTLKILDLLEGRLL---YTLHGHQGSASCVSFSRSGDQ---FASAGSDQQVMV 296
Query: 294 W 294
W
Sbjct: 297 W 297
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Danio rerio (taxid: 7955) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 349 | ||||||
| 359483534 | 1360 | PREDICTED: cellulose synthase A catalyti | 0.971 | 0.249 | 0.669 | 1e-136 | |
| 255562464 | 1458 | wd40 protein, putative [Ricinus communis | 0.957 | 0.229 | 0.663 | 1e-135 | |
| 297740531 | 355 | unnamed protein product [Vitis vinifera] | 0.931 | 0.915 | 0.643 | 1e-134 | |
| 188509977 | 355 | putative G-protein B [Gossypium arboreum | 0.968 | 0.952 | 0.644 | 1e-130 | |
| 49333374 | 355 | putative G-protein beta [Gossypium hirsu | 0.968 | 0.952 | 0.647 | 1e-130 | |
| 49333388 | 355 | putative G-protein beta [Gossypium hirsu | 0.968 | 0.952 | 0.638 | 1e-129 | |
| 188509946 | 355 | putative G-protein B [Gossypium raimondi | 0.968 | 0.952 | 0.633 | 1e-128 | |
| 188509961 | 355 | putative G-protein beta [Gossypioides ki | 0.968 | 0.952 | 0.636 | 1e-127 | |
| 410942751 | 371 | WD40-containing protein [Malus x domesti | 0.974 | 0.916 | 0.603 | 1e-126 | |
| 42573592 | 334 | transducin/WD40 domain-containing protei | 0.948 | 0.991 | 0.650 | 1e-126 |
| >gi|359483534|ref|XP_002269610.2| PREDICTED: cellulose synthase A catalytic subunit 8 [UDP-forming] [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 247/369 (66%), Positives = 294/369 (79%), Gaps = 30/369 (8%)
Query: 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLC 65
A+ RRLRGHKATATCCIASRDRPG VA+SGEDGCICWFD+R KDV L D+G P++SLC
Sbjct: 2 AEARRLRGHKATATCCIASRDRPGLVATSGEDGCICWFDMRCKDVVLTMDLGVNPISSLC 61
Query: 66 FKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGG 125
FK GNEDIIYVSSG EVK FDVH+ +W+PLESYNYNKEEINQI CN KSSFLA ADD G
Sbjct: 62 FKPGNEDIIYVSSGSEVKCFDVHLADAWKPLESYNYNKEEINQIACNSKSSFLASADDDG 121
Query: 126 DVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE------------------------ 161
DVKIIDIRQ CL+K+LR+GH+SICSSV+F+PW+PWE
Sbjct: 122 DVKIIDIRQKCLFKTLRSGHTSICSSVKFLPWRPWEVITGGLDSKLVMWDFSKGRPYKIV 181
Query: 162 --GLP--ENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI 217
G+P EN+ +AGQC NPAFVHAIA+P+ DML+K+ KICVVA+GDGVVDVINIESEL
Sbjct: 182 DFGMPDMENSSSAGQCLNPAFVHAIAVPEVDMLEKSGKICVVARGDGVVDVINIESELAA 241
Query: 218 SRSKSTTKPLKGSQSTSKVNIRDAEM-EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFG 276
++SK+++KP +GS+S SK + + E L+Q+G +RLHLDYS+GGHTA+ SCVAF++FG
Sbjct: 242 AQSKTSSKPQRGSKSRSKSKGSVSTVAETLNQNGRRRLHLDYSLGGHTASVSCVAFALFG 301
Query: 277 ERGKYLISGGNDKLVKVWDCSRFQGV-QTSINNDLLIKNINLNKKVNWLCTTPTESENLV 335
ERGK +ISGGNDK VKVWDCSR+ Q S +ND+L NINL+KKVNWLCTTP +SENLV
Sbjct: 302 ERGKSIISGGNDKTVKVWDCSRYLDAGQPSSSNDVLHLNINLSKKVNWLCTTPADSENLV 361
Query: 336 VCDTSKVVK 344
VCDT+KVVK
Sbjct: 362 VCDTTKVVK 370
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: N/A Phylum: Streptophyta Superkingdom: |
| >gi|255562464|ref|XP_002522238.1| wd40 protein, putative [Ricinus communis] gi|223538491|gb|EEF40096.1| wd40 protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust.
Identities = 244/368 (66%), Positives = 285/368 (77%), Gaps = 34/368 (9%)
Query: 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLC 65
++PRRLRGHKATATCCIASRDRPG VA++GEDG +CWFD+R KD QL+ +VG+ P++SLC
Sbjct: 2 SEPRRLRGHKATATCCIASRDRPGVVATAGEDGRVCWFDMRCKDAQLMMEVGDQPISSLC 61
Query: 66 FKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGG 125
FK GNE+I YVSSG EVK FD+HM S + L+SYN+NKEEINQI CN K++FLA DDGG
Sbjct: 62 FKPGNENIFYVSSGSEVKCFDMHMATSGKLLQSYNHNKEEINQIACNSKAAFLASTDDGG 121
Query: 126 DVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE------------------------ 161
+VKIIDIRQHCL+K+LRAGH+SICSSVQFIPW+PW
Sbjct: 122 NVKIIDIRQHCLFKTLRAGHTSICSSVQFIPWRPWGVITGGLDSKLVMWDFSKGRPTKIV 181
Query: 162 --GLPE-NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS 218
GLPE + N QC NPAFVHAIA+PDADMLDK+ KICVVA+GDG+VDVINIESEL
Sbjct: 182 DFGLPEMKDSNTTQCVNPAFVHAIAVPDADMLDKSGKICVVARGDGIVDVINIESELAAV 241
Query: 219 RSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGER 278
R+K TTK KGSQSTSK D+ QS LH DYS+GGH AAASCVAFS+FGER
Sbjct: 242 RTKITTKARKGSQSTSK----DSNTTAGTQSS--MLHFDYSLGGHVAAASCVAFSLFGER 295
Query: 279 GKYLISGGNDKLVKVWDCSRFQGVQTS-INNDLLIKNINLNKKVNWLCTTPTESENLVVC 337
GK++ISGGNDK VKVWDCSR+ V S NND+L NIN++KKVNWLCTTP+ESENLVVC
Sbjct: 296 GKFIISGGNDKSVKVWDCSRYPDVGPSNSNNDILHLNINMSKKVNWLCTTPSESENLVVC 355
Query: 338 DTSKVVKV 345
DT+KVVK+
Sbjct: 356 DTTKVVKI 363
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297740531|emb|CBI30713.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 240/373 (64%), Positives = 283/373 (75%), Gaps = 48/373 (12%)
Query: 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLC 65
A+ RRLRGHKATATCCIASRDRPG VA+SGEDGCICWFD+R KDV L D+G P++SLC
Sbjct: 2 AEARRLRGHKATATCCIASRDRPGLVATSGEDGCICWFDMRCKDVVLTMDLGVNPISSLC 61
Query: 66 FKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGG 125
FK GNEDIIYVSSG EVK FDVH+ +W+PLESYNYNKEEINQI CN KSSFLA ADD G
Sbjct: 62 FKPGNEDIIYVSSGSEVKCFDVHLADAWKPLESYNYNKEEINQIACNSKSSFLASADDDG 121
Query: 126 DVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE------------------------ 161
DVKIIDIRQ CL+K+LR+GH+SICSSV+F+PW+PWE
Sbjct: 122 DVKIIDIRQKCLFKTLRSGHTSICSSVKFLPWRPWEVITGGLDSKLVMWDFSKGRPYKIV 181
Query: 162 --GLP--ENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI 217
G+P EN+ +AGQC NPAFVHAIA+P+ DML+K+ KICVVA+GDGVVDVINIESEL
Sbjct: 182 DFGMPDMENSSSAGQCLNPAFVHAIAVPEVDMLEKSGKICVVARGDGVVDVINIESELAA 241
Query: 218 SRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGE 277
+ + E L+Q+G +RLHLDYS+GGHTA+ SCVAF++FGE
Sbjct: 242 AHVSTVA-------------------ETLNQNGRRRLHLDYSLGGHTASVSCVAFALFGE 282
Query: 278 RGKYLISGGNDKLVKVWDCSRFQGV-QTSINNDLLIKNINLNKKVNWLCTTPTESENLVV 336
RGK +ISGGNDK VKVWDCSR+ Q S +ND+L NINL+KKVNWLCTTP +SENLVV
Sbjct: 283 RGKSIISGGNDKTVKVWDCSRYLDAGQPSSSNDVLHLNINLSKKVNWLCTTPADSENLVV 342
Query: 337 CDTSKVVKVYSIS 349
CDT+KVVKV+++S
Sbjct: 343 CDTTKVVKVHTVS 355
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|188509977|gb|ACD56659.1| putative G-protein B [Gossypium arboreum] | Back alignment and taxonomy information |
|---|
Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust.
Identities = 232/360 (64%), Positives = 280/360 (77%), Gaps = 22/360 (6%)
Query: 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLC 65
+PRRLRGHKATATCCIASRD+PG VA+SGEDGCICWFD+R KDV+ V DV N P++SLC
Sbjct: 2 TEPRRLRGHKATATCCIASRDKPGLVATSGEDGCICWFDMRCKDVKFVMDVSNEPISSLC 61
Query: 66 FKSGNEDIIYVSSGKEVKSFDVHMPA--SWRPLESYNYNKEEINQIVCNPKSSFLACADD 123
F SGNE+IIYVS+G EVKSFDVHM A SW+PLESYNYNKEEINQ+ CN +SSFLA ADD
Sbjct: 62 FNSGNENIIYVSTGNEVKSFDVHMLADNSWKPLESYNYNKEEINQVTCNSRSSFLASADD 121
Query: 124 GGDVKIIDIRQHCLYKSLRAGHSSICSSV--QFIPWKPWEGLP-----------ENNGNA 170
GG++KIIDI Q ++K+LRAGH+ + + +FI W +G P + NA
Sbjct: 122 GGEIKIIDIHQKRIFKTLRAGHTIVTGGLDSKFIIWDFSKGRPSKIVDFGLPDMRSGSNA 181
Query: 171 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGS 230
GQC NPAFVH++ +PD DMLDK KICVVA+GDGV+DVIN ESEL ++ KS+TK KG+
Sbjct: 182 GQCLNPAFVHSVKVPDVDMLDKIGKICVVARGDGVIDVINTESELTATKPKSSTKSRKGT 241
Query: 231 QSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKL 290
QS + ++ + D++G K LHLDYS+GGHTAA SCV FS+FGE+GK+L+SGGNDKL
Sbjct: 242 QS------KGSDGGVPDENGRKWLHLDYSLGGHTAAVSCVTFSLFGEKGKFLVSGGNDKL 295
Query: 291 VKVWDCSR-FQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349
VKVWDCSR QT N+LL NINL KKVNWLCTTP ES+NLVVCDT+K+VKVYS+S
Sbjct: 296 VKVWDCSRCLDSWQTGDTNELLHLNINLTKKVNWLCTTPAESDNLVVCDTTKLVKVYSVS 355
|
Source: Gossypium arboreum Species: Gossypium arboreum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|49333374|gb|AAT64014.1| putative G-protein beta [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 469 bits (1207), Expect = e-130, Method: Compositional matrix adjust.
Identities = 233/360 (64%), Positives = 282/360 (78%), Gaps = 22/360 (6%)
Query: 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLC 65
+PRRLRGHKATATCCIASRD+PG VA+SGEDGCICWFD+R KDV+ V DV N P++SLC
Sbjct: 2 TEPRRLRGHKATATCCIASRDKPGLVATSGEDGCICWFDMRCKDVKFVMDVSNEPISSLC 61
Query: 66 FKSGNEDIIYVSSGKEVKSFDVHMPA--SWRPLESYNYNKEEINQIVCNPKSSFLACADD 123
F SGNE+IIYVS+G EVKSFDVHM A SW+PLESYNYNKEEINQ+ CN +SSFLA ADD
Sbjct: 62 FNSGNENIIYVSTGNEVKSFDVHMLADNSWKPLESYNYNKEEINQVTCNSRSSFLASADD 121
Query: 124 GGDVKIIDIRQHCLYKSLRAGHSSICSSV--QFIPWKPWE---------GLPE--NNGNA 170
GG++KIIDI Q ++K+LRAGH+ + + +FI W + GLP+ + NA
Sbjct: 122 GGEIKIIDIHQKRIFKTLRAGHTIVTGGLDSKFIIWDFSKGRSSKIVDFGLPDMRSGSNA 181
Query: 171 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGS 230
GQC NPAFVH++ +PD DMLDK KICVVA+GDGV+DVIN ESEL ++ KS+TK KG+
Sbjct: 182 GQCLNPAFVHSVKVPDVDMLDKIGKICVVARGDGVIDVINTESELTATKPKSSTKSRKGT 241
Query: 231 QSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKL 290
QS + ++ + D++G K LHLDYS+GGHTAA SCV FS+FGE+GK+L+SGGNDKL
Sbjct: 242 QS------KGSDGGVPDENGRKWLHLDYSLGGHTAAMSCVTFSLFGEKGKFLVSGGNDKL 295
Query: 291 VKVWDCSR-FQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349
VKVWDCSR QT N+LL NINL KKVNWLCTTP ES+NLVVCDT+K+VKVYS+S
Sbjct: 296 VKVWDCSRCLDSWQTGDTNELLHLNINLTKKVNWLCTTPAESDNLVVCDTTKLVKVYSVS 355
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|49333388|gb|AAT64027.1| putative G-protein beta [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 466 bits (1199), Expect = e-129, Method: Compositional matrix adjust.
Identities = 230/360 (63%), Positives = 280/360 (77%), Gaps = 22/360 (6%)
Query: 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLC 65
+PRRLRGHKATATCCIASRD+PG VA+SGEDGCICWFD+R KDV+ V DV N P++SLC
Sbjct: 2 TEPRRLRGHKATATCCIASRDKPGLVATSGEDGCICWFDMRCKDVKFVMDVSNEPISSLC 61
Query: 66 FKSGNEDIIYVSSGKEVKSFDVHMPA--SWRPLESYNYNKEEINQIVCNPKSSFLACADD 123
F SGNE+IIYVS+G EVK FDVH A SW+PLESYNYNKEEINQ+ CN +SSFLA ADD
Sbjct: 62 FNSGNENIIYVSTGNEVKCFDVHTLADNSWKPLESYNYNKEEINQVTCNSRSSFLASADD 121
Query: 124 GGDVKIIDIRQHCLYKSLRAGHSSICSSV--QFIPWKPWEGLP-----------ENNGNA 170
GG++KIIDIRQ ++K+LRAGH+ + + +FI W +G P + NA
Sbjct: 122 GGEIKIIDIRQKRIFKTLRAGHTIVTGGLDSKFIIWDFSKGCPSKIVDFGLPDMHSGSNA 181
Query: 171 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGS 230
GQC NPAFVH++ +PD DMLDK KICVVA+GDGV+DVIN ESEL ++ KS+TK KG+
Sbjct: 182 GQCLNPAFVHSVKVPDVDMLDKIGKICVVARGDGVIDVINTESELTATKPKSSTKSRKGT 241
Query: 231 QSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKL 290
QS + ++ + D++G K LHLDYS+GGHTAA SC+ FS+FGE+GK+L+SGGNDKL
Sbjct: 242 QS------KGSDGGVPDENGRKWLHLDYSLGGHTAAVSCMTFSLFGEKGKFLVSGGNDKL 295
Query: 291 VKVWDCSRFQGV-QTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349
VKVWDCSR G QT N+LL NINL KKVNWLCTTP ES+NLVVCDT+K+VKVY++S
Sbjct: 296 VKVWDCSRCLGSWQTGDTNELLHLNINLTKKVNWLCTTPAESDNLVVCDTTKLVKVYTVS 355
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|188509946|gb|ACD56632.1| putative G-protein B [Gossypium raimondii] | Back alignment and taxonomy information |
|---|
Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust.
Identities = 228/360 (63%), Positives = 278/360 (77%), Gaps = 22/360 (6%)
Query: 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLC 65
+PRRLRGHKATATCC ASRD+PG VA+SGEDGCICWFD+R KDV+ V DV N P++SLC
Sbjct: 2 TEPRRLRGHKATATCCTASRDKPGLVATSGEDGCICWFDMRCKDVKFVMDVSNEPISSLC 61
Query: 66 FKSGNEDIIYVSSGKEVKSFDVHMPA--SWRPLESYNYNKEEINQIVCNPKSSFLACADD 123
F SGNE+IIYVS+G EVK FDVH A SW+PLESYNYNKEEINQ+ CN +SSFLA ADD
Sbjct: 62 FNSGNENIIYVSTGNEVKCFDVHTLADNSWKPLESYNYNKEEINQVTCNSRSSFLASADD 121
Query: 124 GGDVKIIDIRQHCLYKSLRAGHSSICSSV--QFIPWKPWEGLP-----------ENNGNA 170
GG++KIIDIRQ ++K+LRAGH+ + + +FI W +G P + NA
Sbjct: 122 GGEIKIIDIRQKRIFKTLRAGHTIVTGGLDSKFIIWDFSKGCPSKIVDFGLPDMHSGSNA 181
Query: 171 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGS 230
GQC NPAFVH++ +PD DMLDK KICVVA+GDGV+DVIN ESEL ++ KS+TK KG+
Sbjct: 182 GQCLNPAFVHSVKVPDVDMLDKIGKICVVARGDGVIDVINTESELTATKPKSSTKSRKGT 241
Query: 231 QSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKL 290
QS + ++ + D++G K LHLDYS+GGHTAA SC+ FS+FGE+GK+L+SGGNDKL
Sbjct: 242 QS------KGSDGGVPDENGRKWLHLDYSLGGHTAAVSCMTFSLFGEKGKFLVSGGNDKL 295
Query: 291 VKVWDCSR-FQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349
VKVWDCSR QT N+LL NINL KKVNWLCTTP ES+NLVVCDT+K+VKVY++S
Sbjct: 296 VKVWDCSRCLDSWQTGDTNELLHLNINLTKKVNWLCTTPAESDNLVVCDTTKLVKVYTVS 355
|
Source: Gossypium raimondii Species: Gossypium raimondii Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|188509961|gb|ACD56645.1| putative G-protein beta [Gossypioides kirkii] | Back alignment and taxonomy information |
|---|
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 229/360 (63%), Positives = 276/360 (76%), Gaps = 22/360 (6%)
Query: 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLC 65
+PRRLRGHKATATCCIASRD+PG VA+SGEDGCICWFD+R KDV+ V V N P++SLC
Sbjct: 2 TEPRRLRGHKATATCCIASRDKPGLVATSGEDGCICWFDMRCKDVKFVMAVSNEPISSLC 61
Query: 66 FKSGNEDIIYVSSGKEVKSFDVHMPA--SWRPLESYNYNKEEINQIVCNPKSSFLACADD 123
F SGNE+IIYVS+G EVK FDVHM A SW+PLESYNYNKEEINQ+ CN +SSFLA ADD
Sbjct: 62 FNSGNENIIYVSTGNEVKCFDVHMLADNSWKPLESYNYNKEEINQVTCNSRSSFLASADD 121
Query: 124 GGDVKIIDIRQHCLYKSLRAGHSSICSSV--QFIPWKPWEGLP-----------ENNGNA 170
G ++KIIDIRQ ++K+LRAGH+ + + +FI W +G P + N
Sbjct: 122 GTEIKIIDIRQKRIFKTLRAGHTIVTGGLDSKFIIWDFSKGRPSKIVDFGLPDMRSGSNT 181
Query: 171 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGS 230
GQC NPAFVH++ +PD DMLDK KICVVA+GDGV+DVIN ESEL + KS+TK KG+
Sbjct: 182 GQCLNPAFVHSVKVPDVDMLDKIGKICVVARGDGVIDVINTESELTATTPKSSTKSRKGT 241
Query: 231 QSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKL 290
QS + ++ + D++G K LHLDYS+GGHTAA SCV FS+FGE+GK+L+SGGNDKL
Sbjct: 242 QS------KGSDGGVPDENGRKWLHLDYSLGGHTAAVSCVTFSLFGEKGKFLVSGGNDKL 295
Query: 291 VKVWDCSR-FQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349
VKVWDCSR QT N+LL NINL KKVNWLCTTP ES+NLVVCDT+KVVKVY++S
Sbjct: 296 VKVWDCSRCLDSWQTGDTNELLHLNINLTKKVNWLCTTPAESDNLVVCDTTKVVKVYTVS 355
|
Source: Gossypioides kirkii Species: Gossypioides kirkii Genus: Gossypioides Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|410942751|gb|AFV94635.1| WD40-containing protein [Malus x domestica] | Back alignment and taxonomy information |
|---|
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 227/376 (60%), Positives = 286/376 (76%), Gaps = 36/376 (9%)
Query: 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTS 63
A+ KPRRL+GHKATATCCIAS PG VA+SGEDGC+CWFD+R KD + +VG P++S
Sbjct: 2 ADPKPRRLKGHKATATCCIASAATPGLVATSGEDGCVCWFDMRCKDAIDIMEVGEEPISS 61
Query: 64 LCFKSGNEDIIYVSSGKEVKSFDVHMPA--SWRPLESYNYNKEEINQIVCNPKSSFLACA 121
LCF+ GNE++IYV+SGK+VKSFDV + + SW+PLES++YNKEEINQI C+PKSS LA
Sbjct: 62 LCFRPGNENMIYVASGKQVKSFDVRLGSSCSWKPLESFDYNKEEINQIACSPKSSLLAAP 121
Query: 122 DDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE-------------------- 161
DDGG++KIIDIRQ +YK+LR GH+SICS+ QF+PWKPWE
Sbjct: 122 DDGGEIKIIDIRQKRIYKTLRDGHTSICSTAQFLPWKPWEVITGGLDSKLVMWDFSKGRP 181
Query: 162 ------GLPE-NNGNAG-QCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 213
LP+ NNG A QC+NPAFVH+IA+P+ DMLDK++K+C+VA+GDG VDVINIE+
Sbjct: 182 NKIMNVDLPDANNGKAKEQCFNPAFVHSIAVPEMDMLDKSDKVCIVARGDGAVDVINIEA 241
Query: 214 ELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFS 273
EL RS+ + KP KGSQS SK ++E D+ G KRLHLDY GGHTAA SCVAFS
Sbjct: 242 ELAPLRSQGSKKPQKGSQSRSK----GTDLENPDREGRKRLHLDYLSGGHTAAVSCVAFS 297
Query: 274 MFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESEN 333
+FG+RG+++ISGGNDKLVKVWD ++ + ++DLL NIN +KKVNWLCTTP ++EN
Sbjct: 298 LFGDRGRFIISGGNDKLVKVWDWTKC--LDEGSSSDLLQLNINHSKKVNWLCTTPADTEN 355
Query: 334 LVVCDTSKVVKVYSIS 349
LVVCDT+KVVKVYS++
Sbjct: 356 LVVCDTTKVVKVYSVA 371
|
Source: Malus x domestica Species: Malus x domestica Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42573592|ref|NP_974892.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|332007911|gb|AED95294.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust.
Identities = 229/352 (65%), Positives = 276/352 (78%), Gaps = 21/352 (5%)
Query: 1 MTDAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGP 60
M A +PR+LRGHK+TATCCIASRDRPG V +SGEDGCICWFDLR KDVQ + DVG P
Sbjct: 1 MATAMEEPRKLRGHKSTATCCIASRDRPGIVLTSGEDGCICWFDLRCKDVQFIIDVGTEP 60
Query: 61 VTSLCFKSGNEDIIYVSSGKEVKSFDVHM--PASWRPLESYNYNKEEINQIVCNPKSSFL 118
V+SLCFK+GNE+I+Y S G E+KSFDVH SW+PLESYNYNK+E+NQ+VCN +SSFL
Sbjct: 61 VSSLCFKTGNENILYASCGNEIKSFDVHTLSATSWKPLESYNYNKDEVNQVVCNGRSSFL 120
Query: 119 ACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAF 178
A ADD GDVKIID+ Q CLYK+LRAGH+SICSSVQFIPW+PWEG NN N+GQC NPAF
Sbjct: 121 ASADDSGDVKIIDLGQKCLYKTLRAGHTSICSSVQFIPWRPWEGSDTNN-NSGQCLNPAF 179
Query: 179 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNI 238
VH+IAIP+ DM+DK +KIC VA+GDG+V++INIESEL SR +++K S S + V
Sbjct: 180 VHSIAIPEMDMVDKLDKICAVARGDGIVNLINIESEL--SRKGTSSKGSSSSSSNNVV-- 235
Query: 239 RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR 298
KR+ LDYSVGGH +A SCVAFS+F E+G++LISGGNDK VK+WDC +
Sbjct: 236 -------------KRVCLDYSVGGHNSAVSCVAFSLFQEKGRFLISGGNDKTVKIWDCFK 282
Query: 299 -FQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349
+ N+DLL NINL+KKVNWLCT ++SENLVVCDT++VVKVYSIS
Sbjct: 283 CLDPNNNNNNSDLLHLNINLSKKVNWLCTNQSDSENLVVCDTTRVVKVYSIS 334
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 349 | ||||||
| TAIR|locus:2171953 | 360 | AT5G45760 "AT5G45760" [Arabido | 0.994 | 0.963 | 0.516 | 4.5e-91 | |
| MGI|MGI:1916230 | 358 | Wdr53 "WD repeat domain 53" [M | 0.404 | 0.393 | 0.351 | 7.5e-19 | |
| UNIPROTKB|F1NUJ8 | 320 | POC1A "Uncharacterized protein | 0.392 | 0.428 | 0.26 | 1.2e-08 | |
| ZFIN|ZDB-GENE-040426-1993 | 416 | poc1a "POC1 centriolar protein | 0.169 | 0.141 | 0.378 | 1.8e-06 | |
| RGD|1565004 | 324 | Poc1a "POC1 centriolar protein | 0.160 | 0.172 | 0.428 | 6.2e-06 | |
| MGI|MGI:1917485 | 405 | Poc1a "POC1 centriolar protein | 0.140 | 0.120 | 0.436 | 6.4e-06 | |
| UNIPROTKB|E2RGD1 | 406 | POC1A "Uncharacterized protein | 0.160 | 0.137 | 0.428 | 8e-06 | |
| UNIPROTKB|E9PFC6 | 369 | POC1A "POC1 centriolar protein | 0.263 | 0.249 | 0.307 | 1.9e-05 | |
| UNIPROTKB|H3BPK1 | 210 | KATNB1 "Katanin p80 WD40 repea | 0.444 | 0.738 | 0.192 | 4.9e-05 | |
| ASPGD|ASPL0000032162 | 1364 | AN8468 [Emericella nidulans (t | 0.773 | 0.197 | 0.245 | 5.3e-05 |
| TAIR|locus:2171953 AT5G45760 "AT5G45760" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 908 (324.7 bits), Expect = 4.5e-91, P = 4.5e-91
Identities = 187/362 (51%), Positives = 227/362 (62%)
Query: 1 MTDAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGP 60
M A +PR+LRGHK+TATCCIASRDRPG V +SGEDGCICWFDLR KDVQ + DVG P
Sbjct: 1 MATAMEEPRKLRGHKSTATCCIASRDRPGIVLTSGEDGCICWFDLRCKDVQFIIDVGTEP 60
Query: 61 VTSLCFKSGNEDIIYVSSGKEVKSFDVHM--PASWRPLESYNYNKEEINQIVCNPKSSFL 118
V+SLCFK+GNE+I+Y S G E+KSFDVH SW+PLESYNYNK+E+NQ+VCN +SSFL
Sbjct: 61 VSSLCFKTGNENILYASCGNEIKSFDVHTLSATSWKPLESYNYNKDEVNQVVCNGRSSFL 120
Query: 119 ACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAF 178
A ADD GDVKIID+ Q CLYK+LRAGH+SICSSVQFIPW+PWE + G + F
Sbjct: 121 ASADDSGDVKIIDLGQKCLYKTLRAGHTSICSSVQFIPWRPWEVI--TGGLDSKLVLWDF 178
Query: 179 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNI 238
+ D TN V I I + + +G + +NI
Sbjct: 179 SKGRSQKIIDFGSDTNNNSGQCLNPAFVHSIAIPEMDMVDKLDKICAVARGDGIVNLINI 238
Query: 239 RDAEMEILDQSGG----------KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND 288
S G KR+ LDYSVGGH +A SCVAFS+F E+G++LISGGND
Sbjct: 239 ESELSRKGTSSKGSSSSSSNNVVKRVCLDYSVGGHNSAVSCVAFSLFQEKGRFLISGGND 298
Query: 289 KLVKVWDCSR-FQGVQTSXXXXXXXXXXXXXXXXXWLCTTPTESENLVVCDTSKVVKVYS 347
K VK+WDC + + WLCT ++SENLVVCDT++VVKVYS
Sbjct: 299 KTVKIWDCFKCLDPNNNNNNSDLLHLNINLSKKVNWLCTNQSDSENLVVCDTTRVVKVYS 358
Query: 348 IS 349
IS
Sbjct: 359 IS 360
|
|
| MGI|MGI:1916230 Wdr53 "WD repeat domain 53" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 203 (76.5 bits), Expect = 7.5e-19, Sum P(3) = 7.5e-19
Identities = 52/148 (35%), Positives = 80/148 (54%)
Query: 13 GHKATATCCIASRDRPGFVASSGEDG-CICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNE 71
GH ++ C A++D G VAS GE G + W + + + + G VTS+ F +
Sbjct: 8 GHSSSILCLNANKD--GLVASGGEGGDLVAWGEDGTPLGHMQLE-GADDVTSVLFSASCP 64
Query: 72 DIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIID 131
+Y S G+ + DV L+ ++ N+EEIN + N S LA ADD G +KI+D
Sbjct: 65 TKLYASHGETISVLDVRSLKG--SLDHFHVNEEEINCLSLNETESLLASADDSGAIKILD 122
Query: 132 IRQHCLYKSLRAGHSSICSSVQFIPWKP 159
+ + + +SL+ HS+ICSSV F P +P
Sbjct: 123 LEKKKVTRSLKR-HSNICSSVAFRPQRP 149
|
|
| UNIPROTKB|F1NUJ8 POC1A "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 100 (40.3 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 39/150 (26%), Positives = 60/150 (40%)
Query: 11 LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGN 70
L GHK A C+ VAS D +C + K V V S+ F S
Sbjct: 58 LVGHK-DAVMCVQFSPSGHLVASGSRDKTVCLWVPSVKGESTVFKAHTATVRSVHFSSDG 116
Query: 71 EDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVC---NPKSSFLACADDGGDV 127
+ ++ S K +K + VH + L S + + IN + C +P +A A D V
Sbjct: 117 QSLVTASDDKTIKVWTVHRQ---KFLFSLS---QHINWVRCARFSPDGRLIASASDDKTV 170
Query: 128 KIID-IRQHCLYKSLRAGHSSICSSVQFIP 156
K+ D + C++ H + V+F P
Sbjct: 171 KLWDKTSRECIHSFCE--HGGFANHVEFHP 198
|
|
| ZFIN|ZDB-GENE-040426-1993 poc1a "POC1 centriolar protein homolog A (Chlamydomonas)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 95 (38.5 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 25/66 (37%), Positives = 38/66 (57%)
Query: 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299
D+ ++ILD G+ L Y++ GH +ASCV+FS G++ S G+D+ V VW + F
Sbjct: 249 DSTLKILDLLEGRLL---YTLHGHQGSASCVSFSRSGDQ---FASAGSDQQVMVWR-TNF 301
Query: 300 QGVQTS 305
V S
Sbjct: 302 DSVDYS 307
|
|
| RGD|1565004 Poc1a "POC1 centriolar protein homolog A (Chlamydomonas)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 99 (39.9 bits), Expect = 6.2e-06, Sum P(2) = 6.2e-06
Identities = 27/63 (42%), Positives = 36/63 (57%)
Query: 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299
D+ ++ILD G+ L Y++ GH A+ VAFS GE Y SGG+D+ V VW S F
Sbjct: 250 DSTLKILDLMEGRLL---YTLHGHQGPATTVAFSRTGE---YFASGGSDEQVMVWK-SNF 302
Query: 300 QGV 302
V
Sbjct: 303 DTV 305
|
|
| MGI|MGI:1917485 Poc1a "POC1 centriolar protein homolog A (Chlamydomonas)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 97 (39.2 bits), Expect = 6.4e-06, Sum P(2) = 6.4e-06
Identities = 24/55 (43%), Positives = 33/55 (60%)
Query: 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 294
D+ ++ILD G+ L Y++ GH A+ VAFS GE Y SGG+D+ V VW
Sbjct: 250 DSTLKILDLMEGRLL---YTLHGHQGPATTVAFSRTGE---YFASGGSDEQVMVW 298
|
|
| UNIPROTKB|E2RGD1 POC1A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 98 (39.6 bits), Expect = 8.0e-06, Sum P(2) = 8.0e-06
Identities = 27/63 (42%), Positives = 36/63 (57%)
Query: 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299
D+ ++ILD G+ L Y++ GH A+ VAFS GE Y SGG+D+ V VW S F
Sbjct: 250 DSTLKILDLMEGRLL---YTLHGHQGPATTVAFSRTGE---YFASGGSDEQVMVWK-SNF 302
Query: 300 QGV 302
V
Sbjct: 303 DVV 305
|
|
| UNIPROTKB|E9PFC6 POC1A "POC1 centriolar protein homolog A" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 99 (39.9 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 32/104 (30%), Positives = 49/104 (47%)
Query: 197 CVVAKG-DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNI-----RDAEMEILDQSG 250
C+ A G D V V ++ + + + + + G N D+ ++ILD
Sbjct: 163 CIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNGLSFHPSGNYLITASSDSTLKILDLME 222
Query: 251 GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 294
G+ L Y++ GH A+ VAFS GE Y SGG+D+ V VW
Sbjct: 223 GRLL---YTLHGHQGPATTVAFSRTGE---YFASGGSDEQVMVW 260
|
|
| UNIPROTKB|H3BPK1 KATNB1 "Katanin p80 WD40 repeat-containing subunit B1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 87 (35.7 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 31/161 (19%), Positives = 66/161 (40%)
Query: 1 MTDAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGP 60
+T K + + H + + + + +A+ G+D + + + + + P
Sbjct: 6 VTKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSP 65
Query: 61 VTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLAC 120
V S+ + E I+ S ++ +D+ R L + N I + +P F+A
Sbjct: 66 VESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKAN---ICSLDFHPYGEFVAS 122
Query: 121 ADDGGDVKIIDIRQH-CLYKSLRAGHSSICSSVQFIPWKPW 160
++K+ DIR+ C+++ GHS ++F P W
Sbjct: 123 GSQDTNIKLWDIRRKGCVFRY--RGHSQAVRCLRFSPDGKW 161
|
|
| ASPGD|ASPL0000032162 AN8468 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 131 (51.2 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 76/310 (24%), Positives = 125/310 (40%)
Query: 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLC 65
A+ + L H + S D V+ S +D W D + ++ D +G V SL
Sbjct: 741 AEQQTLENHLGPVESVVFSPDGKQLVSGSYDDTVKIW-DPATGELLQTLDGHSGTVESLA 799
Query: 66 FKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGG 125
F + ++SG + D+ A+ L+++ + I + P LA A D
Sbjct: 800 FSPDGK---LLASGSYDNTIDLWDSATGELLQTFEGHPHSIWSVAFAPDGKELASASDDS 856
Query: 126 DVKIIDIRQHCLYKSLRAGHSSICSSVQFIP----------------WKPWEG-LPEN-N 167
+KI D+ L ++L + HS SV F P W P G L ++
Sbjct: 857 TIKIWDLATGELQQTLDS-HSQSVRSVAFSPDGKLLASSSLDSTIKVWNPATGELQQSLE 915
Query: 168 GNAGQCYNPAFVHAIAIPDADMLDK-TNKICVVAKGDGVVDVIN-IESELNISRSKSTTK 225
G +G + AF PD L + K V +++ +E RS + +
Sbjct: 916 GRSGWVKSVAFS-----PDGKKLASGSEKNTVKLWNPATGELLQTLEGHSQSVRSVAFS- 969
Query: 226 PLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISG 285
P G Q S + D +++ + + G+ L + GH VAFS GK+L+SG
Sbjct: 970 P-DGKQLASSSS--DTTIKLWNSTTGE---LQQTFKGHDLWIRAVAFS---PDGKHLVSG 1020
Query: 286 GNDKLVKVWD 295
+D +K+WD
Sbjct: 1021 SDDNTIKLWD 1030
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00035839001 | SubName- Full=Chromosome chr10 scaffold_81, whole genome shotgun sequence; (375 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 349 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-11 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-10 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-10 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-06 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 4e-05 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-04 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 1e-04 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 0.001 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 0.002 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 2e-11
Identities = 35/161 (21%), Positives = 65/161 (40%), Gaps = 9/161 (5%)
Query: 2 TDAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPV 61
+ R L GH + + S D ++SS D I +D+ + V
Sbjct: 80 LETGECVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWV 138
Query: 62 TSLCFKSGNEDIIYVSSG-KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK-SSFLA 119
S+ F S + + SS +K +D+ + + + + + E+N + +P L+
Sbjct: 139 NSVAF-SPDGTFVASSSQDGTIKLWDL---RTGKCVATLTGHTGEVNSVAFSPDGEKLLS 194
Query: 120 CADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPW 160
+ D G +K+ D+ +LR GH + +SV F P
Sbjct: 195 SSSD-GTIKLWDLSTGKCLGTLR-GHENGVNSVAFSPDGYL 233
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 3e-10
Identities = 63/310 (20%), Positives = 113/310 (36%), Gaps = 88/310 (28%)
Query: 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVG-NGPVTSLCFK 67
R L+GH AS D ++AS D I +DL + + + T G V+S+ F
Sbjct: 45 RTLKGHTGPVRDVAASADGT-YLASGSSDKTIRLWDLETGEC-VRTLTGHTSYVSSVAF- 101
Query: 68 SGNEDIIYVSSG-KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGD 126
S + I+ SS K +K +DV + + L + + + +N + +P +F+A + G
Sbjct: 102 SPDGRILSSSSRDKTIKVWDV---ETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGT 158
Query: 127 VKIIDIRQHCLYKSLRAGHSSICSSVQFIP----------------WKPWEGLPENNGNA 170
+K+ D+R +L GH+ +SV F P W +
Sbjct: 159 IKLWDLRTGKCVATLT-GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDL---------ST 208
Query: 171 GQC-----YNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK 225
G+C + V+++A + DG + V ++ +
Sbjct: 209 GKCLGTLRGHENGVNSVAF------SPDGYLLASGSEDGTIRVWDLRTG----------- 251
Query: 226 PLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISG 285
++ GHT + + +A+S GK L SG
Sbjct: 252 -----------------------------ECVQTLSGHTNSVTSLAWS---PDGKRLASG 279
Query: 286 GNDKLVKVWD 295
D +++WD
Sbjct: 280 SADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.9 bits (146), Expect = 3e-10
Identities = 59/313 (18%), Positives = 103/313 (32%), Gaps = 41/313 (13%)
Query: 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKS 68
L GH + S D +AS DG I +DL + + T G+ F
Sbjct: 192 STLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSP 251
Query: 69 GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVK 128
+ SS ++ +D+ +S L + + + + + +P LA G V+
Sbjct: 252 DGSLLASGSSDGTIRLWDLRSSSS--LLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVR 309
Query: 129 IIDIRQHCLYKSLRA-GHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDA 187
+ D+ L SL GH SS+ F P +
Sbjct: 310 LWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSL-----------------------LVSG 346
Query: 188 DMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD 247
D T ++ + G + + + L++S S GS + V + D L
Sbjct: 347 GSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGT-VRLWDLSTGSLL 405
Query: 248 QSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF-QGVQTSI 306
++ S+ F GK L SG +D +++WD + V S
Sbjct: 406 RNLDGHTSRVTSLD-------------FSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSP 452
Query: 307 NNDLLIKNINLNK 319
+ +L +
Sbjct: 453 DGKVLASKSSDLS 465
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 2e-06
Identities = 63/316 (19%), Positives = 103/316 (32%), Gaps = 70/316 (22%)
Query: 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKS 68
R L+GH TC S D +A+ DG I +DL + ++ GPV + +
Sbjct: 3 RTLKGHTGGVTCVAFSPD-GKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA 61
Query: 69 GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVK 128
+ SS K ++ +D+ R L + ++ + +P L+ + +K
Sbjct: 62 DGTYLASGSSDKTIRLWDLETGECVRTLTGH---TSYVSSVAFSPDGRILSSSSRDKTIK 118
Query: 129 IIDIRQHCLYKSLRA--GHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPD 186
+ D+ K L GH+ +SV F P
Sbjct: 119 VWDVET---GKCLTTLRGHTDWVNSVAFSP------------------------------ 145
Query: 187 ADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQST-SKVNIRDAEMEI 245
+ DG + + ++ R+ L G + V ++
Sbjct: 146 ------DGTFVASSSQDGTIKLWDL-------RTGKCVATLTGHTGEVNSVAFSPDGEKL 192
Query: 246 LDQSGGKRLHL-DYSVG-------GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD-- 295
L S + L D S G GH + VAFS G L SG D ++VWD
Sbjct: 193 LSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFS---PDGYLLASGSEDGTIRVWDLR 249
Query: 296 ----CSRFQGVQTSIN 307
G S+
Sbjct: 250 TGECVQTLSGHTNSVT 265
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 15/93 (16%)
Query: 258 YSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL 317
++ GHT + VAFS G ++ S D +K+WD + + +
Sbjct: 129 TTLRGHTDWVNSVAFS---PDGTFVASSSQDGTIKLWD----------LRTGKCVATLTG 175
Query: 318 NKK-VNWLCTTPTESENLVVCDTSKVVKVYSIS 349
+ VN + +P E L+ + +K++ +S
Sbjct: 176 HTGEVNSVAFSPDG-EKLLSSSSDGTIKLWDLS 207
|
Length = 289 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 4e-05
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 258 YSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD 295
++ GHT + VAFS G L SG +D V+VWD
Sbjct: 5 RTLKGHTGPVTSVAFS---PDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 53/307 (17%), Positives = 100/307 (32%), Gaps = 83/307 (27%)
Query: 58 NGPVTSLCFKSGNEDIIYVSSG-KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSS 116
G VT + F S + ++ SG +K +D+ R L+ + + + + +
Sbjct: 9 TGGVTCVAF-SPDGKLLATGSGDGTIKVWDLETGELLRTLKG---HTGPVRDVAASADGT 64
Query: 117 FLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP-------------WKPWEGL 163
+LA +++ D+ ++L GH+S SSV F P K W+
Sbjct: 65 YLASGSSDKTIRLWDLETGECVRTLT-GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV- 122
Query: 164 PENNGNAGQCYN--PAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK 221
G +V+++A + DG + + ++ +
Sbjct: 123 --ETGKCLTTLRGHTDWVNSVAF------SPDGTFVASSSQDGTIKLWDLRTG------- 167
Query: 222 STTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKY 281
L GHT + VAFS G+
Sbjct: 168 ---------------------------KCVATLT------GHTGEVNSVAFS---PDGEK 191
Query: 282 LISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSK 341
L+S +D +K+WD S + + T L + VN + +P L
Sbjct: 192 LLSSSSDGTIKLWDLSTGKCLGT------LRGH---ENGVNSVAFSPD-GYLLASGSEDG 241
Query: 342 VVKVYSI 348
++V+ +
Sbjct: 242 TIRVWDL 248
|
Length = 289 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 1e-04
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 262 GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD 295
GHT + VAFS GKYL SG +D +K+WD
Sbjct: 10 GHTGPVTSVAFS---PDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.1 bits (92), Expect = 0.001
Identities = 52/311 (16%), Positives = 109/311 (35%), Gaps = 26/311 (8%)
Query: 58 NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP----ASWRPLESYNYNKEEINQIVCNP 113
+TS+ F E ++ SS +K +D+ S L + +K ++ +
Sbjct: 65 EDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS--SPDG 122
Query: 114 KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP---WKPWEGLPEN---- 166
S LA + G VK+ D+ GHS +S+ F P +
Sbjct: 123 NSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKL 182
Query: 167 -NGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES--ELNISRSKST 223
+ G+ + H + + DG + + ++ + L + S +
Sbjct: 183 WDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHS 242
Query: 224 TKPLKGSQSTSKVNI---RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK 280
+ + D + + D L S GH+++ VAFS GK
Sbjct: 243 DSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLS--GHSSSVLSVAFS---PDGK 297
Query: 281 YLISGGNDKLVKVWDCS--RFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD 338
L SG +D V++WD + T ++ + +++ + + L + ++ + + D
Sbjct: 298 LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357
Query: 339 TSKVVKVYSIS 349
+ ++
Sbjct: 358 LRTGKPLKTLE 368
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.002
Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 13/88 (14%)
Query: 262 GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKV 321
GHT +CVAFS GK L +G D +KVWD +LL V
Sbjct: 7 GHTGGVTCVAFS---PDGKLLATGSGDGTIKVWDLE---------TGELLRTLKGHTGPV 54
Query: 322 NWLCTTPTESENLVVCDTSKVVKVYSIS 349
+ L + K ++++ +
Sbjct: 55 RD-VAASADGTYLASGSSDKTIRLWDLE 81
|
Length = 289 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 349 | |||
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 100.0 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 100.0 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 100.0 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 100.0 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 100.0 | |
| PTZ00421 | 493 | coronin; Provisional | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 100.0 | |
| PTZ00421 | 493 | coronin; Provisional | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 100.0 | |
| PTZ00420 | 568 | coronin; Provisional | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 100.0 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 100.0 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 100.0 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 100.0 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| PTZ00420 | 568 | coronin; Provisional | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 100.0 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 100.0 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.98 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.98 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.98 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.98 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.97 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.97 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.97 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.97 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.97 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.97 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.97 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.96 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.96 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.96 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.96 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.96 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.96 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.96 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.96 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.96 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.96 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.95 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.95 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.95 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.95 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.95 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.95 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.95 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.95 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.95 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.95 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.95 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.94 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.94 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.94 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.94 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.94 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.94 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.94 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.94 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.93 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.93 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.93 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.93 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.93 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.93 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.92 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.92 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.91 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.91 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.91 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.91 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.9 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.9 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.9 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.9 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.9 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.9 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.9 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.9 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.89 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.89 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.88 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.88 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.88 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.86 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.86 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.86 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.86 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.85 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.84 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.84 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.84 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.84 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.83 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.83 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.83 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.83 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.82 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.82 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.81 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.81 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.81 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.81 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.81 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.8 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.8 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.8 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.79 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.78 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.77 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.76 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.76 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.75 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.75 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.74 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.74 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.74 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.74 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.74 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.73 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.72 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.71 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.7 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.7 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.69 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.68 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.68 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.68 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.67 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.67 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.67 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.67 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.66 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.66 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.66 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.64 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.63 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.63 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.63 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.61 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.6 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.6 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.6 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.6 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.59 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.58 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.58 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.57 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.56 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.56 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.56 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.54 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.53 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.53 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.53 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.53 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.51 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.49 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.48 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.48 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.45 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.45 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.44 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.44 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.42 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.41 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 99.41 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.4 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.39 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.38 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.38 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.37 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.35 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 99.34 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.34 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.32 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 99.3 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.28 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 99.27 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.27 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.25 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.25 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 99.25 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.24 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.24 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.21 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.19 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.19 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 99.17 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.14 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 99.12 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.12 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 99.11 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.09 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 99.08 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 99.08 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 99.07 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 99.07 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 99.07 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.05 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.05 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 99.04 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 99.03 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 99.02 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.02 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.99 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.99 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.98 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.98 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.97 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.96 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.95 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.94 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.9 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.88 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.85 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.8 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.79 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.74 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.74 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.7 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.67 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.65 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.65 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.65 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.63 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.62 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.62 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.62 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.61 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.61 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.59 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.56 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.56 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 98.49 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.49 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.42 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.41 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.41 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 98.37 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.27 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.26 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 98.24 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 98.23 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.22 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.22 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.21 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 98.16 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.14 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.14 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.13 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.13 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 98.13 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 98.05 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.04 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.04 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.99 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.96 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.96 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.9 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.89 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.87 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.84 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.81 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 97.76 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.75 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.73 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.73 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.69 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.69 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.69 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 97.67 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.57 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.57 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.57 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.57 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.55 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 97.51 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 97.5 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.47 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.46 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 97.43 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 97.41 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 97.39 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.27 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 97.25 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 97.24 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 97.24 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.23 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.16 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 97.14 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 97.14 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.92 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 96.72 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 96.7 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.7 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.34 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 96.33 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 96.29 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 96.28 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 96.24 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 96.23 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 96.19 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 96.18 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 96.11 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 96.06 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 96.0 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 95.98 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 95.96 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 95.86 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 95.77 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 95.74 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.71 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 95.61 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 95.56 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 95.53 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 95.31 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 95.27 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 95.19 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 95.1 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 95.0 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 94.97 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 94.79 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 94.78 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 94.72 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 94.63 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 94.53 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 94.5 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 94.49 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 94.47 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 94.47 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 94.15 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 94.15 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 94.11 | |
| PRK10115 | 686 | protease 2; Provisional | 94.09 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 94.06 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 94.0 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 93.91 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 93.8 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 93.76 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 93.57 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 93.45 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 93.45 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 93.37 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 93.27 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 92.88 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 92.48 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 92.47 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 92.44 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 92.43 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 92.38 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 92.21 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 91.51 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 91.41 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 91.09 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 91.07 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 90.97 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 90.76 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 90.76 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 90.22 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 90.01 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 89.66 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 89.51 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 88.98 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 88.74 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 88.49 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 88.45 | |
| PRK10115 | 686 | protease 2; Provisional | 88.32 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 88.05 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 87.99 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 87.91 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 87.8 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 87.73 | |
| smart00564 | 33 | PQQ beta-propeller repeat. Beta-propeller repeat o | 87.56 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 86.73 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 86.07 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 86.01 | |
| PRK05560 | 805 | DNA gyrase subunit A; Validated | 85.94 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 85.48 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 85.29 | |
| PF01011 | 38 | PQQ: PQQ enzyme repeat family.; InterPro: IPR00237 | 85.09 | |
| COG5308 | 1263 | NUP170 Nuclear pore complex subunit [Intracellular | 85.06 | |
| PF14269 | 299 | Arylsulfotran_2: Arylsulfotransferase (ASST) | 84.92 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 84.79 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 84.33 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 84.21 | |
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 83.87 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 83.73 | |
| PF01011 | 38 | PQQ: PQQ enzyme repeat family.; InterPro: IPR00237 | 82.97 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 82.15 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 82.11 | |
| PLN02193 | 470 | nitrile-specifier protein | 81.69 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 81.63 | |
| PF14269 | 299 | Arylsulfotran_2: Arylsulfotransferase (ASST) | 81.42 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 81.38 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 80.9 | |
| PF12341 | 27 | DUF3639: Protein of unknown function (DUF3639) ; I | 80.68 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 80.44 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 80.04 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 80.01 |
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-52 Score=319.03 Aligned_cols=324 Identities=18% Similarity=0.203 Sum_probs=273.7
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 85 (349)
.+-..+.||.++|.|+.|+|+ +..|++|+.|.++++||+.+..+.++.++|..-|.+++|+|||+.||+|+.||+|++|
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~-g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPT-GSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLW 184 (480)
T ss_pred eeccccCCCCCcEEEEEecCC-CceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEe
Confidence 345567899999999999998 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCcccceeeccCcccceEEEEEcc-----CCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCC-
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNP-----KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKP- 159 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~- 159 (349)
|.++++ .....+.+|...|++++|.| ..++||+++.||.|+|||+..+.++..+. +|..+|+|+.|--++.
T Consensus 185 dpktg~--~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ls-gHT~~VTCvrwGG~gli 261 (480)
T KOG0271|consen 185 DPKTGQ--QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLS-GHTASVTCVRWGGEGLI 261 (480)
T ss_pred cCCCCC--cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEec-cCccceEEEEEcCCceE
Confidence 999875 44567888999999999976 46899999999999999999999999999 9999999999986653
Q ss_pred CCCCCCCC-----CCCcccc-----CCceeEEeecCcccc------------------------------cCCCCcEEEE
Q 018858 160 WEGLPENN-----GNAGQCY-----NPAFVHAIAIPDADM------------------------------LDKTNKICVV 199 (349)
Q Consensus 160 ~~~~~~~~-----~~~~~~~-----~~~~~~~~~~~~~~~------------------------------~~~~~~~l~~ 199 (349)
|.++.|.+ ...+.+. +...++.++.+.... ....+..|++
T Consensus 262 ySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVS 341 (480)
T KOG0271|consen 262 YSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVS 341 (480)
T ss_pred EecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEE
Confidence 44555555 2222222 224566666552110 0113446999
Q ss_pred EcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeee----cCceeeeeeeeecCCCcceEEEEEeee
Q 018858 200 AKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----SGGKRLHLDYSVGGHTAAASCVAFSMF 275 (349)
Q Consensus 200 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~h~~~i~~i~~~~~ 275 (349)
|+.|.++.+|+....+.+......++..+..+.||||++++|+ ++.|. +.....+.+.++++|-+.|+.++|+
T Consensus 342 gsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IAS-aSFDkSVkLW~g~tGk~lasfRGHv~~VYqvaws-- 418 (480)
T KOG0271|consen 342 GSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIAS-ASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWS-- 418 (480)
T ss_pred ecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEE-eecccceeeeeCCCcchhhhhhhccceeEEEEec--
Confidence 9999999999998777666666667788999999999999995 33333 3455778889999999999999999
Q ss_pred cCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 276 GERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 276 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
.|.++|++|+.|.+++|||+++. ++...+.+|.+.|.++.|+| ||+.+++++.|..+++|.
T Consensus 419 -aDsRLlVS~SkDsTLKvw~V~tk---------Kl~~DLpGh~DEVf~vDwsp-DG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 419 -ADSRLLVSGSKDSTLKVWDVRTK---------KLKQDLPGHADEVFAVDWSP-DGQRVASGGKDKVLRLWR 479 (480)
T ss_pred -cCccEEEEcCCCceEEEEEeeee---------eecccCCCCCceEEEEEecC-CCceeecCCCceEEEeec
Confidence 89999999999999999999997 67778889999999999988 899999999999999995
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=297.95 Aligned_cols=280 Identities=18% Similarity=0.224 Sum_probs=254.6
Q ss_pred CCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecC--CCEEEEEeCCCeEEEEEccCC
Q 018858 13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSG--NEDIIYVSSGKEVKSFDVHMP 90 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~ 90 (349)
+-+.+|..+.|+++ ++.|+||+.+|.+++|+..+...++++.+|...|.++.|+|. +..+|+|+.||++++|++.+.
T Consensus 173 gd~rPis~~~fS~d-s~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 173 GDTRPISGCSFSRD-SKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred cCCCcceeeEeecC-CCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 56789999999998 899999999999999999999999999999999999999996 568999999999999999864
Q ss_pred CcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCC
Q 018858 91 ASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNA 170 (349)
Q Consensus 91 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 170 (349)
.++..+.+|...|..++|+|+|++|++++.|.+-++||++++..+.... +|...|.+++|+|
T Consensus 252 ---~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QE-GHs~~v~~iaf~~-------------- 313 (459)
T KOG0272|consen 252 ---TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQE-GHSKGVFSIAFQP-------------- 313 (459)
T ss_pred ---cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhc-ccccccceeEecC--------------
Confidence 5677788899999999999999999999999999999999998887777 9999999999999
Q ss_pred ccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeee--
Q 018858 171 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ-- 248 (349)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 248 (349)
+|.++++|+.|..-+|||++++.++..+.. +..+|..++|+|+|-.+|+ ++.|.
T Consensus 314 ----------------------DGSL~~tGGlD~~~RvWDlRtgr~im~L~g-H~k~I~~V~fsPNGy~lAT-gs~Dnt~ 369 (459)
T KOG0272|consen 314 ----------------------DGSLAATGGLDSLGRVWDLRTGRCIMFLAG-HIKEILSVAFSPNGYHLAT-GSSDNTC 369 (459)
T ss_pred ----------------------CCceeeccCccchhheeecccCcEEEEecc-cccceeeEeECCCceEEee-cCCCCcE
Confidence 899999999999999999999999988887 6678999999999999996 33333
Q ss_pred --cCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEe
Q 018858 249 --SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCT 326 (349)
Q Consensus 249 --~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 326 (349)
+..+.-..++++.+|..-|+.+.|+| ..|.+|+|++.|++++||...+. .+++.+.+|.+.|.++++
T Consensus 370 kVWDLR~r~~ly~ipAH~nlVS~Vk~~p--~~g~fL~TasyD~t~kiWs~~~~---------~~~ksLaGHe~kV~s~Di 438 (459)
T KOG0272|consen 370 KVWDLRMRSELYTIPAHSNLVSQVKYSP--QEGYFLVTASYDNTVKIWSTRTW---------SPLKSLAGHEGKVISLDI 438 (459)
T ss_pred EEeeecccccceecccccchhhheEecc--cCCeEEEEcccCcceeeecCCCc---------ccchhhcCCccceEEEEe
Confidence 23334455788999999999999994 37899999999999999999998 788899999999999999
Q ss_pred ecCCCCcEEEeeCCCeEEEee
Q 018858 327 TPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 327 ~~~~~~~l~~~~~dg~i~iw~ 347 (349)
++ +++++++++.|.++++|.
T Consensus 439 s~-d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 439 SP-DSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cc-CCceEEEeccCceeeecc
Confidence 88 899999999999999995
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-45 Score=264.71 Aligned_cols=270 Identities=16% Similarity=0.218 Sum_probs=238.8
Q ss_pred CceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceE
Q 018858 28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEIN 107 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~ 107 (349)
.-+|++++.|-+|++|...+|.+..+++...+.|..+.+.|+++.||+++. ..|++||++++.. .++..+.+|...|+
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np-~Pv~t~e~h~kNVt 87 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNP-NPVATFEGHTKNVT 87 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCC-CceeEEeccCCceE
Confidence 468999999999999999999999999988999999999999999999885 5699999998754 47788899999999
Q ss_pred EEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcc
Q 018858 108 QIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDA 187 (349)
Q Consensus 108 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (349)
.+.|..+|+++++|++||+++|||++...+.+.++ +..+|+++..+|
T Consensus 88 aVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~--~~spVn~vvlhp------------------------------- 134 (311)
T KOG0315|consen 88 AVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ--HNSPVNTVVLHP------------------------------- 134 (311)
T ss_pred EEEEeecCeEEEecCCCceEEEEeccCcccchhcc--CCCCcceEEecC-------------------------------
Confidence 99999999999999999999999999988877777 789999999999
Q ss_pred cccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeee------eeec---Cceeeeeee
Q 018858 188 DMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI------LDQS---GGKRLHLDY 258 (349)
Q Consensus 188 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~---~~~~~~~~~ 258 (349)
+...|++|..+|.|++||+....+...+.......+.+++..|||+++++..+ |+.. ....+.++.
T Consensus 135 -----nQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~ 209 (311)
T KOG0315|consen 135 -----NQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVH 209 (311)
T ss_pred -----CcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhh
Confidence 67889999999999999999988777777777889999999999999986321 2211 122557778
Q ss_pred eecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEee
Q 018858 259 SVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD 338 (349)
Q Consensus 259 ~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 338 (349)
.++.|.+.+..+.+| |++++|+++|.|.+++||+.+... +....+.+|..-+...+|+. ||+||+|++
T Consensus 210 k~~ah~~~il~C~lS---Pd~k~lat~ssdktv~iwn~~~~~--------kle~~l~gh~rWvWdc~FS~-dg~YlvTas 277 (311)
T KOG0315|consen 210 KFQAHNGHILRCLLS---PDVKYLATCSSDKTVKIWNTDDFF--------KLELVLTGHQRWVWDCAFSA-DGEYLVTAS 277 (311)
T ss_pred heecccceEEEEEEC---CCCcEEEeecCCceEEEEecCCce--------eeEEEeecCCceEEeeeecc-CccEEEecC
Confidence 899999999999999 999999999999999999999862 44556778999999999976 999999999
Q ss_pred CCCeEEEeeCC
Q 018858 339 TSKVVKVYSIS 349 (349)
Q Consensus 339 ~dg~i~iw~~~ 349 (349)
.|+.+++|+++
T Consensus 278 sd~~~rlW~~~ 288 (311)
T KOG0315|consen 278 SDHTARLWDLS 288 (311)
T ss_pred CCCceeecccc
Confidence 99999999985
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-43 Score=260.37 Aligned_cols=290 Identities=13% Similarity=0.108 Sum_probs=250.5
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
++..++|+||.+.|.++.|+++ .+++++++.||.+.|||.-+....+.++....-|..++|+|+|+++|.|+-|+...|
T Consensus 45 ~~~rr~LkGH~~Ki~~~~ws~D-sr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 45 MRTRRTLKGHLNKIYAMDWSTD-SRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSI 123 (343)
T ss_pred eeeEEEecccccceeeeEecCC-cCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEE
Confidence 3456899999999999999999 899999999999999999988888888888999999999999999999999999999
Q ss_pred EEccCCC---cccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCC
Q 018858 85 FDVHMPA---SWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE 161 (349)
Q Consensus 85 wd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 161 (349)
|++.+.. ..+....+.+|.+.+.|..|-+ ..+|++++.|.++.+||+++++.+..|. +|.+.|.++++.|.
T Consensus 124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~-GH~gDV~slsl~p~---- 197 (343)
T KOG0286|consen 124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFH-GHTGDVMSLSLSPS---- 197 (343)
T ss_pred EecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEec-CCcccEEEEecCCC----
Confidence 9998541 2244556889999999999987 5679999999999999999999999999 99999999999994
Q ss_pred CCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEE
Q 018858 162 GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA 241 (349)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (349)
+++.+++|+-|+..++||++.+...+.+.. ++..|..+.|.|+|.-++
T Consensus 198 -------------------------------~~ntFvSg~cD~~aklWD~R~~~c~qtF~g-hesDINsv~ffP~G~afa 245 (343)
T KOG0286|consen 198 -------------------------------DGNTFVSGGCDKSAKLWDVRSGQCVQTFEG-HESDINSVRFFPSGDAFA 245 (343)
T ss_pred -------------------------------CCCeEEecccccceeeeeccCcceeEeecc-cccccceEEEccCCCeee
Confidence 789999999999999999999977776654 467899999999999998
Q ss_pred EeeeeeecCc----eeeeeeeeec--CCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecc
Q 018858 242 EMEILDQSGG----KRLHLDYSVG--GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI 315 (349)
Q Consensus 242 ~~~~~~~~~~----~~~~~~~~~~--~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 315 (349)
.|+.|.+.+ +.-+.+..+. .-..+|++++|+ ..|++|.+|..|.++.+||.-.+ +....+.
T Consensus 246 -tGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS---~SGRlLfagy~d~~c~vWDtlk~---------e~vg~L~ 312 (343)
T KOG0286|consen 246 -TGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFS---KSGRLLFAGYDDFTCNVWDTLKG---------ERVGVLA 312 (343)
T ss_pred -ecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEc---ccccEEEeeecCCceeEeecccc---------ceEEEee
Confidence 454444322 1111222222 234589999999 89999999999999999999887 6677888
Q ss_pred ccccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 316 NLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 316 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
+|.+.|.++..+| ||--+++++.|..++||.
T Consensus 313 GHeNRvScl~~s~-DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 313 GHENRVSCLGVSP-DGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ccCCeeEEEEECC-CCcEEEecchhHheeecC
Confidence 9999999999988 898999999999999995
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-45 Score=289.08 Aligned_cols=289 Identities=16% Similarity=0.205 Sum_probs=251.1
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCC-CcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRS-KDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
+.++.+.||++.|+++.|.|..+.+|++++.|+.|+||++.. +++++++.+|..+|..++|+++|..+++++.|+.|++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 457789999999999999995489999999999999999876 8889999999999999999999999999999999999
Q ss_pred EEccCCCcccceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCC
Q 018858 85 FDVHMPASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
||+++|+....+.. ...++|+.|+|++ +.|++|+.|+.|+.||+++++.++++. .|-+.|..+.|-+
T Consensus 285 wDtETG~~~~~f~~----~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd-~hLg~i~~i~F~~------- 352 (503)
T KOG0282|consen 285 WDTETGQVLSRFHL----DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD-RHLGAILDITFVD------- 352 (503)
T ss_pred eccccceEEEEEec----CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH-hhhhheeeeEEcc-------
Confidence 99999865544443 3578999999998 889999999999999999999999999 8999999999999
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEE-
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE- 242 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 242 (349)
+++.+++.+.|+.++||+.+.+-.+........-...++..+|+++++++
T Consensus 353 -----------------------------~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQ 403 (503)
T KOG0282|consen 353 -----------------------------EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQ 403 (503)
T ss_pred -----------------------------CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhh
Confidence 89999999999999999999876666666666667788999999999985
Q ss_pred -----eeeeeecCceeeeeeeeecCCC--cceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecc
Q 018858 243 -----MEILDQSGGKRLHLDYSVGGHT--AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI 315 (349)
Q Consensus 243 -----~~~~~~~~~~~~~~~~~~~~h~--~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 315 (349)
.+.............+.+.+|. +.-..+.|| |||.+|++|+.||.+.+||.++. +++..+.
T Consensus 404 s~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fS---pDG~~l~SGdsdG~v~~wdwkt~---------kl~~~lk 471 (503)
T KOG0282|consen 404 SMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFS---PDGRTLCSGDSDGKVNFWDWKTT---------KLVSKLK 471 (503)
T ss_pred ccCceEEEEecccccccCHhhhhcceeccCceeeEEEc---CCCCeEEeecCCccEEEeechhh---------hhhhccc
Confidence 1112222222344456677875 445677888 99999999999999999999997 7888899
Q ss_pred ccccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 316 NLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 316 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
.|...++.+.|+|.....+|+|+.||.|++|+
T Consensus 472 ah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 472 AHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 99999999999998888999999999999996
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-43 Score=257.34 Aligned_cols=257 Identities=19% Similarity=0.258 Sum_probs=223.4
Q ss_pred CCccCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCC-----CcEEEEeecCCCCeEEEEEecCCCEEEE
Q 018858 1 MTDAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRS-----KDVQLVTDVGNGPVTSLCFKSGNEDIIY 75 (349)
Q Consensus 1 m~~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 75 (349)
|+++..+..+|++|++.|+.++..+.+.+.+++++.|..+.+|++.. |..++.+.+|...|..+..+++|++.++
T Consensus 1 ~~e~l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS 80 (315)
T KOG0279|consen 1 MQEQLVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALS 80 (315)
T ss_pred CchhheeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEe
Confidence 67778888999999999999999998889999999999999999753 5668899999999999999999999999
Q ss_pred EeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEc
Q 018858 76 VSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFI 155 (349)
Q Consensus 76 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 155 (349)
++.|+.+++||+.++ +....+.+|...|.+++|+++.+++++|+.|.+|++|++............+.+.|.|+.|+
T Consensus 81 ~swD~~lrlWDl~~g---~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfs 157 (315)
T KOG0279|consen 81 ASWDGTLRLWDLATG---ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFS 157 (315)
T ss_pred ccccceEEEEEecCC---cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEc
Confidence 999999999999986 45567788999999999999999999999999999999887665554442337889999999
Q ss_pred cCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeec
Q 018858 156 PWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSK 235 (349)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (349)
|+ ++..++++++.|++|++||+++.
T Consensus 158 P~----------------------------------~~~p~Ivs~s~DktvKvWnl~~~--------------------- 182 (315)
T KOG0279|consen 158 PN----------------------------------ESNPIIVSASWDKTVKVWNLRNC--------------------- 182 (315)
T ss_pred CC----------------------------------CCCcEEEEccCCceEEEEccCCc---------------------
Confidence 93 13778999999999999999974
Q ss_pred cccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecc
Q 018858 236 VNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI 315 (349)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 315 (349)
+....+.+|.+.++.++++ |||..+++|+.||.+.+||++.++ .+ ...
T Consensus 183 -------------------~l~~~~~gh~~~v~t~~vS---pDGslcasGgkdg~~~LwdL~~~k---------~l-ysl 230 (315)
T KOG0279|consen 183 -------------------QLRTTFIGHSGYVNTVTVS---PDGSLCASGGKDGEAMLWDLNEGK---------NL-YSL 230 (315)
T ss_pred -------------------chhhccccccccEEEEEEC---CCCCEEecCCCCceEEEEEccCCc---------ee-Eec
Confidence 5667888999999999999 999999999999999999999973 33 445
Q ss_pred ccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 316 NLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 316 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.|...|++++|+|+. +.+.+..+..|+|||+.
T Consensus 231 ~a~~~v~sl~fspnr--ywL~~at~~sIkIwdl~ 262 (315)
T KOG0279|consen 231 EAFDIVNSLCFSPNR--YWLCAATATSIKIWDLE 262 (315)
T ss_pred cCCCeEeeEEecCCc--eeEeeccCCceEEEecc
Confidence 788899999999843 55555566679999974
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-42 Score=253.79 Aligned_cols=260 Identities=19% Similarity=0.262 Sum_probs=213.9
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK 83 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 83 (349)
.+..++.|+||...|..+..+++ +++.++++.|+++++||+.+++..+.|.+|...|.+++|+++...|++|+.|++|+
T Consensus 52 ~G~~~r~~~GHsH~v~dv~~s~d-g~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTik 130 (315)
T KOG0279|consen 52 YGVPVRRLTGHSHFVSDVVLSSD-GNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIK 130 (315)
T ss_pred cCceeeeeeccceEecceEEccC-CceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceee
Confidence 46789999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCcccceeeccCcccceEEEEEccC--CCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCC
Q 018858 84 SFDVHMPASWRPLESYNYNKEEINQIVCNPK--SSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE 161 (349)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 161 (349)
+|+.... +...+.. ..+.+.|.|+.|+|+ ..+|++++.|++|++||+++.+....+. +|.+.++.++++|
T Consensus 131 lwnt~g~-ck~t~~~-~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~-gh~~~v~t~~vSp----- 202 (315)
T KOG0279|consen 131 LWNTLGV-CKYTIHE-DSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFI-GHSGYVNTVTVSP----- 202 (315)
T ss_pred eeeeccc-EEEEEec-CCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccc-cccccEEEEEECC-----
Confidence 9998753 2222222 122688999999998 6899999999999999999999989998 9999999999999
Q ss_pred CCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEE
Q 018858 162 GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA 241 (349)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (349)
||.++++|+.||.+.+||++.+
T Consensus 203 -------------------------------DGslcasGgkdg~~~LwdL~~~--------------------------- 224 (315)
T KOG0279|consen 203 -------------------------------DGSLCASGGKDGEAMLWDLNEG--------------------------- 224 (315)
T ss_pred -------------------------------CCCEEecCCCCceEEEEEccCC---------------------------
Confidence 8999999999999999999975
Q ss_pred EeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccce
Q 018858 242 EMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKV 321 (349)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v 321 (349)
+.++.+ +|...|++++|+ |+...|+ +..+..|+|||+.+...+........-.....-....
T Consensus 225 -------------k~lysl-~a~~~v~sl~fs---pnrywL~-~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~c 286 (315)
T KOG0279|consen 225 -------------KNLYSL-EAFDIVNSLCFS---PNRYWLC-AATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPIC 286 (315)
T ss_pred -------------ceeEec-cCCCeEeeEEec---CCceeEe-eccCCceEEEeccchhhhhhccccccccccccCCcEE
Confidence 333444 477899999999 7755554 4456679999999985443211100000111123345
Q ss_pred EEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 322 NWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 322 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.+++|++ +|..|+++-.|+.|++|.+.
T Consensus 287 lslaws~-dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 287 LSLAWSA-DGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEEEcC-CCcEEEeeecCCcEEEEEee
Confidence 6788977 99999999999999999863
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=275.04 Aligned_cols=247 Identities=15% Similarity=0.156 Sum_probs=220.6
Q ss_pred cCCCCeeeeCCceeeeEEEEecC-CCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeE
Q 018858 4 AEAKPRRLRGHKATATCCIASRD-RPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEV 82 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~-~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 82 (349)
+...+++|.+|...|.++.|+|. ++..++||+.||++++|++.+..++..+.+|...|..++|+|+|++|++++.|.+-
T Consensus 206 ~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tW 285 (459)
T KOG0272|consen 206 QCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTW 285 (459)
T ss_pred CcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccch
Confidence 45788999999999999999998 46789999999999999999989999999999999999999999999999999999
Q ss_pred EEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCC
Q 018858 83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEG 162 (349)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 162 (349)
++||++++.. +-...+|...|.+++|+|||.++++|+.|..-+|||++++.++..+. +|..+|.+++|+|
T Consensus 286 RlWD~~tk~E---lL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~-gH~k~I~~V~fsP------ 355 (459)
T KOG0272|consen 286 RLWDLETKSE---LLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLA-GHIKEILSVAFSP------ 355 (459)
T ss_pred hhcccccchh---hHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEec-ccccceeeEeECC------
Confidence 9999998643 34456789999999999999999999999999999999999999999 9999999999999
Q ss_pred CCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeecc-ccEEE
Q 018858 163 LPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKV-NIRDA 241 (349)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 241 (349)
+|..|++|+.|++++|||++...... ....+.+.+..+.|+|+ |.+|+
T Consensus 356 ------------------------------NGy~lATgs~Dnt~kVWDLR~r~~ly-~ipAH~nlVS~Vk~~p~~g~fL~ 404 (459)
T KOG0272|consen 356 ------------------------------NGYHLATGSSDNTCKVWDLRMRSELY-TIPAHSNLVSQVKYSPQEGYFLV 404 (459)
T ss_pred ------------------------------CceEEeecCCCCcEEEeeecccccce-ecccccchhhheEecccCCeEEE
Confidence 89999999999999999999866633 33445678899999994 55555
Q ss_pred Eeeeeeec----CceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEe
Q 018858 242 EMEILDQS----GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD 295 (349)
Q Consensus 242 ~~~~~~~~----~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd 295 (349)
+++.|.. ....+.+++.+.||.+.|.++.++ +++.+++|++.|+++++|.
T Consensus 405 -TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis---~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 405 -TASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDIS---PDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred -EcccCcceeeecCCCcccchhhcCCccceEEEEec---cCCceEEEeccCceeeecc
Confidence 5555544 344778899999999999999999 8999999999999999995
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-42 Score=286.25 Aligned_cols=245 Identities=19% Similarity=0.292 Sum_probs=222.4
Q ss_pred eeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc-------------------------------EEEEeecCC
Q 018858 10 RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD-------------------------------VQLVTDVGN 58 (349)
Q Consensus 10 ~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~-------------------------------~~~~~~~~~ 58 (349)
++..-...++|..|+++ +.+||.|-.|..|++|.+...+ ...++.+|.
T Consensus 373 T~~nt~~~v~ca~fSdd-ssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~ 451 (707)
T KOG0263|consen 373 TFHNTYQGVTCAEFSDD-SSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS 451 (707)
T ss_pred EEEEcCCcceeEeecCC-cchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCC
Confidence 33334467999999998 8899999999999999987311 123567899
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEe
Q 018858 59 GPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLY 138 (349)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 138 (349)
++|....|+|+.++|+++++|+++++|.+.+. ..+-.+.+|..+|+++.|+|.|-+||+++.|++-++|......++
T Consensus 452 GPVyg~sFsPd~rfLlScSED~svRLWsl~t~---s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~Pl 528 (707)
T KOG0263|consen 452 GPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW---SCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPL 528 (707)
T ss_pred CceeeeeecccccceeeccCCcceeeeecccc---eeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCch
Confidence 99999999999999999999999999999974 455667789999999999999999999999999999999999999
Q ss_pred ceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeee
Q 018858 139 KSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS 218 (349)
Q Consensus 139 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 218 (349)
+.+. +|.+.|.|+.|+| +.+++++|+.|.++++||..++
T Consensus 529 Rifa-ghlsDV~cv~FHP------------------------------------Ns~Y~aTGSsD~tVRlWDv~~G---- 567 (707)
T KOG0263|consen 529 RIFA-GHLSDVDCVSFHP------------------------------------NSNYVATGSSDRTVRLWDVSTG---- 567 (707)
T ss_pred hhhc-ccccccceEEECC------------------------------------cccccccCCCCceEEEEEcCCC----
Confidence 9999 9999999999999 8999999999999999999986
Q ss_pred ecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCC
Q 018858 219 RSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR 298 (349)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 298 (349)
..++.+.||.++|.+++|+ |+|++|++|++||.|.+||+.+
T Consensus 568 ------------------------------------~~VRiF~GH~~~V~al~~S---p~Gr~LaSg~ed~~I~iWDl~~ 608 (707)
T KOG0263|consen 568 ------------------------------------NSVRIFTGHKGPVTALAFS---PCGRYLASGDEDGLIKIWDLAN 608 (707)
T ss_pred ------------------------------------cEEEEecCCCCceEEEEEc---CCCceEeecccCCcEEEEEcCC
Confidence 5677889999999999999 8999999999999999999999
Q ss_pred CcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 299 FQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
+ .++..+.+|.+.|.++.|+. +|..|++++.|.+|++||+
T Consensus 609 ~---------~~v~~l~~Ht~ti~SlsFS~-dg~vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 609 G---------SLVKQLKGHTGTIYSLSFSR-DGNVLASGGADNSVRLWDL 648 (707)
T ss_pred C---------cchhhhhcccCceeEEEEec-CCCEEEecCCCCeEEEEEc
Confidence 8 78889999999999999977 8999999999999999997
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=259.36 Aligned_cols=320 Identities=17% Similarity=0.170 Sum_probs=246.9
Q ss_pred CeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEee---cCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD---VGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 8 ~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
..+++.|..-|.|+.|+|| |.+++|++.||.+.+||=.+++.+..+. +|.+.|.+++|+||+..+++++.|.+++|
T Consensus 183 k~s~r~HskFV~~VRysPD-G~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KI 261 (603)
T KOG0318|consen 183 KSSFREHSKFVNCVRYSPD-GSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKI 261 (603)
T ss_pred eecccccccceeeEEECCC-CCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEE
Confidence 3456789999999999999 8999999999999999999999999888 89999999999999999999999999999
Q ss_pred EEccCCC----------------------------------------cccceeeccCcccceEEEEEccCCCEEEEEcCC
Q 018858 85 FDVHMPA----------------------------------------SWRPLESYNYNKEEINQIVCNPKSSFLACADDG 124 (349)
Q Consensus 85 wd~~~~~----------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 124 (349)
||+.+.+ ...++..+.+|...|++++.+|++++|++|+.|
T Consensus 262 WdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyD 341 (603)
T KOG0318|consen 262 WDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYD 341 (603)
T ss_pred EEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccC
Confidence 9997653 112334456888999999999999999999999
Q ss_pred CcEEEEEcCCceEeceeccccccceeEEEEccCCCCC-CCCC---------------------CCCCCccc---------
Q 018858 125 GDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE-GLPE---------------------NNGNAGQC--------- 173 (349)
Q Consensus 125 g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~---------------------~~~~~~~~--------- 173 (349)
|.|.-|+..++..-+.....|...|.+++-+..+... ...| ...+.+..
T Consensus 342 G~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~av 421 (603)
T KOG0318|consen 342 GHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAV 421 (603)
T ss_pred ceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEE
Confidence 9999999988766444322677777777666522111 0000 00000000
Q ss_pred ---------cC----------CceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeee-ecCCCCCCccceeee
Q 018858 174 ---------YN----------PAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS-RSKSTTKPLKGSQST 233 (349)
Q Consensus 174 ---------~~----------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~ 233 (349)
++ .....+++++| ++..+++|+.||.|++|.+....... .....+...+..+++
T Consensus 422 v~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~------~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vay 495 (603)
T KOG0318|consen 422 VACISDIVLLQDQTKVSSIPIGYESSAVAVSP------DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAY 495 (603)
T ss_pred EEecCcEEEEecCCcceeeccccccceEEEcC------CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEE
Confidence 00 01234566666 89999999999999999999865433 355567789999999
Q ss_pred eccccEEEEeee------eeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccc
Q 018858 234 SKVNIRDAEMEI------LDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSIN 307 (349)
Q Consensus 234 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~ 307 (349)
|||+.+|++... ++...... ......-|.+.|++++|+ |+...+|||+.|..|.||+++...
T Consensus 496 Spd~~yla~~Da~rkvv~yd~~s~~~--~~~~w~FHtakI~~~aWs---P~n~~vATGSlDt~Viiysv~kP~------- 563 (603)
T KOG0318|consen 496 SPDGAYLAAGDASRKVVLYDVASREV--KTNRWAFHTAKINCVAWS---PNNKLVATGSLDTNVIIYSVKKPA------- 563 (603)
T ss_pred CCCCcEEEEeccCCcEEEEEcccCce--ecceeeeeeeeEEEEEeC---CCceEEEeccccceEEEEEccChh-------
Confidence 999999996221 22221111 122333489999999999 899999999999999999999864
Q ss_pred cceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 308 NDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 308 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
+.+.....|...|+.+.|- +...|++.+.|..|++|++.
T Consensus 564 -~~i~iknAH~~gVn~v~wl--de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 564 -KHIIIKNAHLGGVNSVAWL--DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred -hheEeccccccCceeEEEe--cCceEEeccCcceeEEeccc
Confidence 4455667799999999995 45589999999999999874
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-41 Score=255.58 Aligned_cols=247 Identities=16% Similarity=0.247 Sum_probs=227.5
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 85 (349)
++-+.+++|.+.|.|+++.|. ...|+||+.|++|+|||+.++++..++.+|-..|..+++++-..|+++++.|+.|+-|
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~-n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCw 220 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPG-NEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCW 220 (460)
T ss_pred eehhhhhhccceEEEEeeCCC-ceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEE
Confidence 566788999999999999998 7999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCC
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPE 165 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 165 (349)
|++.+ +.+..+.+|-..|.|++.+|.-+.|++|+.|..+++||+++...+..+. +|..+|..+.+.|
T Consensus 221 DLe~n---kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~-GH~~~V~~V~~~~--------- 287 (460)
T KOG0285|consen 221 DLEYN---KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLS-GHTNPVASVMCQP--------- 287 (460)
T ss_pred echhh---hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEec-CCCCcceeEEeec---------
Confidence 99964 5667788899999999999999999999999999999999999999999 9999999999998
Q ss_pred CCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeee
Q 018858 166 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI 245 (349)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (349)
.+..+++|+.|++|++||++.+
T Consensus 288 ---------------------------~dpqvit~S~D~tvrlWDl~ag------------------------------- 309 (460)
T KOG0285|consen 288 ---------------------------TDPQVITGSHDSTVRLWDLRAG------------------------------- 309 (460)
T ss_pred ---------------------------CCCceEEecCCceEEEeeeccC-------------------------------
Confidence 5667899999999999999986
Q ss_pred eeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEE
Q 018858 246 LDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLC 325 (349)
Q Consensus 246 ~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 325 (349)
+...++..|...+.+++.+ |....+|+++.| .|+-|++..+ ..+..+.+|...|++++
T Consensus 310 ---------kt~~tlt~hkksvral~lh---P~e~~fASas~d-nik~w~~p~g---------~f~~nlsgh~~iintl~ 367 (460)
T KOG0285|consen 310 ---------KTMITLTHHKKSVRALCLH---PKENLFASASPD-NIKQWKLPEG---------EFLQNLSGHNAIINTLS 367 (460)
T ss_pred ---------ceeEeeecccceeeEEecC---CchhhhhccCCc-cceeccCCcc---------chhhccccccceeeeee
Confidence 5556788899999999999 888899999987 4999999998 67777889999999999
Q ss_pred eecCCCCcEEEeeCCCeEEEeeC
Q 018858 326 TTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 326 ~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.++ |+ ++++|++.|.+.+||.
T Consensus 368 ~ns-D~-v~~~G~dng~~~fwdw 388 (460)
T KOG0285|consen 368 VNS-DG-VLVSGGDNGSIMFWDW 388 (460)
T ss_pred ecc-Cc-eEEEcCCceEEEEEec
Confidence 977 54 8999999999999985
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=239.51 Aligned_cols=297 Identities=17% Similarity=0.160 Sum_probs=227.5
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc---EEEEe-ecCCCCeEEEEEecCCCEEEEEeCCC
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD---VQLVT-DVGNGPVTSLCFKSGNEDIIYVSSGK 80 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~---~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg 80 (349)
....+.+++|++.|..++|+|-.|.+||+++.|..|++|+...+. +...+ .+|+..|.+++|+|.|++|++++.|.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 456789999999999999999646699999999999999988532 23333 36999999999999999999999999
Q ss_pred eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCC---ceEeceeccccccceeEEEEccC
Q 018858 81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ---HCLYKSLRAGHSSICSSVQFIPW 157 (349)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~v~~~~~~~~ 157 (349)
++.||.-..+ ..+.+..+.+|+.+|.+++|+++|++||++++|+.|.||.+.. -++...+. .|...|..+.|+|
T Consensus 84 t~~Iw~k~~~-efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~-~HtqDVK~V~WHP- 160 (312)
T KOG0645|consen 84 TVVIWKKEDG-EFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQ-EHTQDVKHVIWHP- 160 (312)
T ss_pred eEEEeecCCC-ceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeec-cccccccEEEEcC-
Confidence 9999986644 4577888999999999999999999999999999999999874 35677888 8999999999999
Q ss_pred CCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC-c--eeeeecCCCCCCccceeeee
Q 018858 158 KPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES-E--LNISRSKSTTKPLKGSQSTS 234 (349)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~--~~~~~~~~~~~~~~~~~~~~ 234 (349)
...+|++++.|.+|++|+-.. . .+...+. ....-+.+++|+
T Consensus 161 -----------------------------------t~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~-g~~~TVW~~~F~ 204 (312)
T KOG0645|consen 161 -----------------------------------TEDLLFSCSYDNTIKVYRDEDDDDWECVQTLD-GHENTVWSLAFD 204 (312)
T ss_pred -----------------------------------CcceeEEeccCCeEEEEeecCCCCeeEEEEec-CccceEEEEEec
Confidence 788999999999999998772 2 1222222 223467778888
Q ss_pred ccccEEEEeeeeeecCceeeeeeeeec-CCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeee
Q 018858 235 KVNIRDAEMEILDQSGGKRLHLDYSVG-GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIK 313 (349)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 313 (349)
+.|..++ ....|.+...- .....+. .|...++.+.|. ...|++++.|+.|++|.-......... ..+...
T Consensus 205 ~~G~rl~-s~sdD~tv~Iw-~~~~~~~~~~sr~~Y~v~W~-----~~~IaS~ggD~~i~lf~~s~~~d~p~~--~l~~~~ 275 (312)
T KOG0645|consen 205 NIGSRLV-SCSDDGTVSIW-RLYTDLSGMHSRALYDVPWD-----NGVIASGGGDDAIRLFKESDSPDEPSW--NLLAKK 275 (312)
T ss_pred CCCceEE-EecCCcceEee-eeccCcchhcccceEeeeec-----ccceEeccCCCEEEEEEecCCCCCchH--HHHHhh
Confidence 8887776 33333332221 1112232 366778888774 347888888888888876643111100 012224
Q ss_pred ccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 314 NINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 314 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
...|...|++++|.|...+.|+++++||.|++|.+.
T Consensus 276 ~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 276 EGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred hcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 456999999999999556799999999999999863
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=257.49 Aligned_cols=294 Identities=13% Similarity=0.104 Sum_probs=235.5
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC---cEEEEeecCCCCeEEEEEecCCCEEEEEeCCC
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK---DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGK 80 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 80 (349)
..+..+.|..|++.|+-+.|+++ |++||+++.|.+..+|++... +..+++.+|..+|..+.||||.+++++|+.+.
T Consensus 213 p~qt~qil~~htdEVWfl~FS~n-GkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e 291 (519)
T KOG0293|consen 213 PSQTWQILQDHTDEVWFLQFSHN-GKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDE 291 (519)
T ss_pred CchhhhhHhhCCCcEEEEEEcCC-CeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchH
Confidence 34567889999999999999998 999999999999999987543 34788899999999999999999999999999
Q ss_pred eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCC
Q 018858 81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPW 160 (349)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 160 (349)
.+.+||+.++........- +...+.+.+|.||+..+++|+.|+.+..||+... .+...+......|.+++..+
T Consensus 292 ~~~lwDv~tgd~~~~y~~~--~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~---- 364 (519)
T KOG0293|consen 292 VLSLWDVDTGDLRHLYPSG--LGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITY---- 364 (519)
T ss_pred heeeccCCcchhhhhcccC--cCCCcceeEEccCCceeEecCCCCcEEEecCCcc-hhhcccccccceeEEEEEcC----
Confidence 9999999998654443332 4567899999999999999999999999998643 34444412234577888877
Q ss_pred CCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEE
Q 018858 161 EGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRD 240 (349)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (349)
||+++++.+.|..|++|+.++..... ......++.+.+.|.|++++
T Consensus 365 --------------------------------Dgk~vl~v~~d~~i~l~~~e~~~dr~--lise~~~its~~iS~d~k~~ 410 (519)
T KOG0293|consen 365 --------------------------------DGKYVLLVTVDKKIRLYNREARVDRG--LISEEQPITSFSISKDGKLA 410 (519)
T ss_pred --------------------------------CCcEEEEEecccceeeechhhhhhhc--cccccCceeEEEEcCCCcEE
Confidence 89999999999999999998653332 22345678999999999999
Q ss_pred EEeee---eeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecccc
Q 018858 241 AEMEI---LDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL 317 (349)
Q Consensus 241 ~~~~~---~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 317 (349)
++.-. ...+.......+..+.||...-.-|.-.--+.+..++++||+|+.|+||+..++ +++..+.+|
T Consensus 411 LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg---------kll~~LsGH 481 (519)
T KOG0293|consen 411 LVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG---------KLLAVLSGH 481 (519)
T ss_pred EEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC---------ceeEeecCC
Confidence 86321 122233344666778888764333321111145689999999999999999998 888999999
Q ss_pred ccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 318 NKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 318 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
...|++++|+|.+...+|++|+||+|+||..
T Consensus 482 s~~vNcVswNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 482 SKTVNCVSWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred cceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence 9999999999999999999999999999975
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=252.67 Aligned_cols=267 Identities=17% Similarity=0.253 Sum_probs=235.0
Q ss_pred ccCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCC-CcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCe
Q 018858 3 DAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRS-KDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKE 81 (349)
Q Consensus 3 ~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 81 (349)
.+++..+.|+||++.|..++|+.. |+++++++.|-.+++||.++ .+++..+.+|...|.+++|-|.|++|++++.|.+
T Consensus 138 ~tg~~e~~LrGHt~sv~di~~~a~-Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~t 216 (406)
T KOG0295|consen 138 ETGELERSLRGHTDSVFDISFDAS-GKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNT 216 (406)
T ss_pred cchhhhhhhhccccceeEEEEecC-ccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccc
Confidence 467788999999999999999998 89999999999999999986 4567788899999999999999999999999999
Q ss_pred EEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCC
Q 018858 82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE 161 (349)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 161 (349)
|+.|++.++ ..+.++++|...|..++.+.||..+++++.|.+|++|-+.++++...++ .|.-+|.+++|.|...+-
T Consensus 217 ik~We~~tg---~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR-~hEh~vEci~wap~~~~~ 292 (406)
T KOG0295|consen 217 IKAWECDTG---YCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELR-EHEHPVECIAWAPESSYP 292 (406)
T ss_pred eeEEecccc---eeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhh-ccccceEEEEecccccCc
Confidence 999999986 5667888899999999999999999999999999999999999999999 999999999999953221
Q ss_pred CCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEE
Q 018858 162 GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA 241 (349)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (349)
...+.... +..+.++++++.|++|++||+.++
T Consensus 293 ~i~~at~~---------------------~~~~~~l~s~SrDktIk~wdv~tg--------------------------- 324 (406)
T KOG0295|consen 293 SISEATGS---------------------TNGGQVLGSGSRDKTIKIWDVSTG--------------------------- 324 (406)
T ss_pred chhhccCC---------------------CCCccEEEeecccceEEEEeccCC---------------------------
Confidence 11110000 113578999999999999999986
Q ss_pred EeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccce
Q 018858 242 EMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKV 321 (349)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v 321 (349)
.++.++.+|...|..++|+ |.|+||+++.+|+++++||+++. ..+.....|...+
T Consensus 325 -------------~cL~tL~ghdnwVr~~af~---p~Gkyi~ScaDDktlrvwdl~~~---------~cmk~~~ah~hfv 379 (406)
T KOG0295|consen 325 -------------MCLFTLVGHDNWVRGVAFS---PGGKYILSCADDKTLRVWDLKNL---------QCMKTLEAHEHFV 379 (406)
T ss_pred -------------eEEEEEecccceeeeeEEc---CCCeEEEEEecCCcEEEEEeccc---------eeeeccCCCccee
Confidence 7888999999999999999 89999999999999999999998 6777788999999
Q ss_pred EEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 322 NWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 322 ~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
++++|+. +.-++++|+-|..+++|.-
T Consensus 380 t~lDfh~-~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 380 TSLDFHK-TAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEEecCC-CCceEEeccccceeeeeec
Confidence 9999966 5559999999999999964
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=253.55 Aligned_cols=275 Identities=16% Similarity=0.193 Sum_probs=227.2
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcE-EEEeecCCCCeEEEEEec-----CCCEEEEEe
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV-QLVTDVGNGPVTSLCFKS-----GNEDIIYVS 77 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~-----~~~~l~~~~ 77 (349)
+..+.++.++|...|.|++|+|| ++.||+|+.||+|++||.+++++ ...+.+|...|++++|.| ..++||+++
T Consensus 146 TeTp~~t~KgH~~WVlcvawsPD-gk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~s 224 (480)
T KOG0271|consen 146 TETPLFTCKGHKNWVLCVAWSPD-GKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSS 224 (480)
T ss_pred CCCcceeecCCccEEEEEEECCC-cchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceeccc
Confidence 45678999999999999999999 99999999999999999998876 578899999999999965 567899999
Q ss_pred CCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccC
Q 018858 78 SGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPW 157 (349)
Q Consensus 78 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 157 (349)
.||.|+|||+..+ ..+..+.+|..+|+|+.|-.+ .++++|+.|++|++|+...|++.+.++ +|...|+.++.+-+
T Consensus 225 kDg~vrIWd~~~~---~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lk-GHahwvN~lalsTd 299 (480)
T KOG0271|consen 225 KDGSVRIWDTKLG---TCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELK-GHAHWVNHLALSTD 299 (480)
T ss_pred CCCCEEEEEccCc---eEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhc-ccchheeeeeccch
Confidence 9999999999865 455667789999999999754 589999999999999999999999999 99999999988843
Q ss_pred -----CCCC---------------------------------CCCCCC----C------CCcc-ccCCceeEEeecCccc
Q 018858 158 -----KPWE---------------------------------GLPENN----G------NAGQ-CYNPAFVHAIAIPDAD 188 (349)
Q Consensus 158 -----~~~~---------------------------------~~~~~~----~------~~~~-~~~~~~~~~~~~~~~~ 188 (349)
|.+. ++.+.+ . +... .-+..-++.+.|+|
T Consensus 300 y~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP-- 377 (480)
T KOG0271|consen 300 YVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP-- 377 (480)
T ss_pred hhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECC--
Confidence 1111 111111 0 0000 01234578889999
Q ss_pred ccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecC----ceeeeeeeeecCCC
Q 018858 189 MLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG----GKRLHLDYSVGGHT 264 (349)
Q Consensus 189 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~h~ 264 (349)
|++++|+++.|..|++||.++++.+..+.++ -..+..++|+.|.+.++ +++.|.++ ....++...+.+|.
T Consensus 378 ----d~r~IASaSFDkSVkLW~g~tGk~lasfRGH-v~~VYqvawsaDsRLlV-S~SkDsTLKvw~V~tkKl~~DLpGh~ 451 (480)
T KOG0271|consen 378 ----DGRYIASASFDKSVKLWDGRTGKFLASFRGH-VAAVYQVAWSADSRLLV-SGSKDSTLKVWDVRTKKLKQDLPGHA 451 (480)
T ss_pred ----CccEEEEeecccceeeeeCCCcchhhhhhhc-cceeEEEEeccCccEEE-EcCCCceEEEEEeeeeeecccCCCCC
Confidence 9999999999999999999999888777654 35678899999999988 45544433 33556677889999
Q ss_pred cceEEEEEeeecCCccEEEEeeCCCeEEEEe
Q 018858 265 AAASCVAFSMFGERGKYLISGGNDKLVKVWD 295 (349)
Q Consensus 265 ~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd 295 (349)
..|.++.|+ |||..+++|+.|..+++|.
T Consensus 452 DEVf~vDws---pDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 452 DEVFAVDWS---PDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ceEEEEEec---CCCceeecCCCceEEEeec
Confidence 999999999 9999999999999999995
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=252.49 Aligned_cols=254 Identities=19% Similarity=0.303 Sum_probs=231.4
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 85 (349)
.+.+.+.+|..+|+.+-|+|+ -.++++++.|++|++||..+++....+++|...|..++|+..|+++++++.|-.+++|
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~-~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LW 177 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPS-EALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLW 177 (406)
T ss_pred CchhhhhccccceeeeeeccC-ceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhhe
Confidence 456778899999999999998 7889999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCC
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPE 165 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 165 (349)
|..+ ....++...+|+..|.+++|-|.|.++++++.|.+|+.|++.++-++.++. +|...|.-++.+.
T Consensus 178 d~~~--~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~-~h~ewvr~v~v~~--------- 245 (406)
T KOG0295|consen 178 DFDT--FFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFP-GHSEWVRMVRVNQ--------- 245 (406)
T ss_pred eHHH--HHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEecc-CchHhEEEEEecC---------
Confidence 9985 256667777888999999999999999999999999999999999999999 9999999999888
Q ss_pred CCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeee
Q 018858 166 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI 245 (349)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (349)
||.++++++.|.+|++|-..+.
T Consensus 246 ---------------------------DGti~As~s~dqtl~vW~~~t~------------------------------- 267 (406)
T KOG0295|consen 246 ---------------------------DGTIIASCSNDQTLRVWVVATK------------------------------- 267 (406)
T ss_pred ---------------------------CeeEEEecCCCceEEEEEeccc-------------------------------
Confidence 8999999999999999999874
Q ss_pred eeecCceeeeeeeeecCCCcceEEEEEeeec--C----------CccEEEEeeCCCeEEEEecCCCcceecccccceeee
Q 018858 246 LDQSGGKRLHLDYSVGGHTAAASCVAFSMFG--E----------RGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIK 313 (349)
Q Consensus 246 ~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~--~----------~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 313 (349)
.+...++.|+.+|.+++|.|.. | .+.++.+++.|++|++||+.++ .++..
T Consensus 268 ---------~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg---------~cL~t 329 (406)
T KOG0295|consen 268 ---------QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG---------MCLFT 329 (406)
T ss_pred ---------hhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC---------eEEEE
Confidence 4556778888888899887621 1 2369999999999999999999 78889
Q ss_pred ccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 314 NINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 314 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
+.+|.+.|..++|+| .|+||+++.+|+++++||+.
T Consensus 330 L~ghdnwVr~~af~p-~Gkyi~ScaDDktlrvwdl~ 364 (406)
T KOG0295|consen 330 LVGHDNWVRGVAFSP-GGKYILSCADDKTLRVWDLK 364 (406)
T ss_pred EecccceeeeeEEcC-CCeEEEEEecCCcEEEEEec
Confidence 999999999999998 89999999999999999974
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=254.79 Aligned_cols=250 Identities=23% Similarity=0.306 Sum_probs=219.7
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCC----
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA---- 91 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---- 91 (349)
..|++++|+.+ |..||+|+.||.+++|+.. +.++.++..|.+||.++.|+..|.||++++.|+++.+||..++.
T Consensus 236 kdVT~L~Wn~~-G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~ 313 (524)
T KOG0273|consen 236 KDVTSLDWNND-GTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQ 313 (524)
T ss_pred CCcceEEecCC-CCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEe
Confidence 57999999998 9999999999999999965 67788899999999999999999999999999999999986542
Q ss_pred ----------------------------------cccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceE
Q 018858 92 ----------------------------------SWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL 137 (349)
Q Consensus 92 ----------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 137 (349)
...+..++.+|.++|.++.|+|.+.+|++++.|++++||.......
T Consensus 314 f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~ 393 (524)
T KOG0273|consen 314 FEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNS 393 (524)
T ss_pred eeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcc
Confidence 2245566778999999999999999999999999999999998888
Q ss_pred eceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceee
Q 018858 138 YKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI 217 (349)
Q Consensus 138 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 217 (349)
...+. .|...|+.+.|+|.+.-.. .| ..+..+++++.|++|++||+..+
T Consensus 394 ~~~l~-~Hskei~t~~wsp~g~v~~----------------------n~-----~~~~~l~sas~dstV~lwdv~~g--- 442 (524)
T KOG0273|consen 394 VHDLQ-AHSKEIYTIKWSPTGPVTS----------------------NP-----NMNLMLASASFDSTVKLWDVESG--- 442 (524)
T ss_pred hhhhh-hhccceeeEeecCCCCccC----------------------CC-----cCCceEEEeecCCeEEEEEccCC---
Confidence 89999 9999999999999654322 11 16788999999999999999975
Q ss_pred eecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecC
Q 018858 218 SRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS 297 (349)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~ 297 (349)
.+++.+..|..+|++++|+ |+|+|+|+|+.||.|.+|+.+
T Consensus 443 -------------------------------------v~i~~f~kH~~pVysvafS---~~g~ylAsGs~dg~V~iws~~ 482 (524)
T KOG0273|consen 443 -------------------------------------VPIHTLMKHQEPVYSVAFS---PNGRYLASGSLDGCVHIWSTK 482 (524)
T ss_pred -------------------------------------ceeEeeccCCCceEEEEec---CCCcEEEecCCCCeeEecccc
Confidence 6778898999999999999 999999999999999999999
Q ss_pred CCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 298 RFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
++ ++.+...+ .+.|..++|+. +|.+|..+-.|+.+++-|++
T Consensus 483 ~~---------~l~~s~~~-~~~Ifel~Wn~-~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 483 TG---------KLVKSYQG-TGGIFELCWNA-AGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred ch---------heeEeecC-CCeEEEEEEcC-CCCEEEEEecCCCceEEEec
Confidence 97 55555544 55699999987 77889999999999998874
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-40 Score=272.78 Aligned_cols=240 Identities=21% Similarity=0.339 Sum_probs=214.1
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
....++|.||+++|..+.|+|+ .++|++++.|+++++|.+.+...+..+++|..||..+.|+|.|-|+|+++.|++-++
T Consensus 441 ~~~~~~L~GH~GPVyg~sFsPd-~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArL 519 (707)
T KOG0263|consen 441 SGTSRTLYGHSGPVYGCSFSPD-RRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARL 519 (707)
T ss_pred CceeEEeecCCCceeeeeeccc-ccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeee
Confidence 3456779999999999999999 899999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCC
Q 018858 85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLP 164 (349)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 164 (349)
|.... ..++..+.+|-..|.|+.|+|++.++++|+.|.+|++||+.+|..++.|. +|.++|.+++|+|
T Consensus 520 Ws~d~---~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~-GH~~~V~al~~Sp-------- 587 (707)
T KOG0263|consen 520 WSTDH---NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT-GHKGPVTALAFSP-------- 587 (707)
T ss_pred eeccc---CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEec-CCCCceEEEEEcC--------
Confidence 99885 46777888899999999999999999999999999999999999999999 9999999999999
Q ss_pred CCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEee
Q 018858 165 ENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME 244 (349)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (349)
+|++|++|+.||.|.+||+.++
T Consensus 588 ----------------------------~Gr~LaSg~ed~~I~iWDl~~~------------------------------ 609 (707)
T KOG0263|consen 588 ----------------------------CGRYLASGDEDGLIKIWDLANG------------------------------ 609 (707)
T ss_pred ----------------------------CCceEeecccCCcEEEEEcCCC------------------------------
Confidence 8999999999999999999985
Q ss_pred eeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCccee---------------cccccc
Q 018858 245 ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ---------------TSINND 309 (349)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~---------------~~~~~~ 309 (349)
.++..+.+|.+.|+++.|+ .+|..||+|+.|+.|++||+....... ......
T Consensus 610 ----------~~v~~l~~Ht~ti~SlsFS---~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (707)
T KOG0263|consen 610 ----------SLVKQLKGHTGTIYSLSFS---RDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSL 676 (707)
T ss_pred ----------cchhhhhcccCceeEEEEe---cCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcc
Confidence 6778889999999999999 999999999999999999987643320 001123
Q ss_pred eeeeccccccceEEEEeec
Q 018858 310 LLIKNINLNKKVNWLCTTP 328 (349)
Q Consensus 310 ~~~~~~~~~~~v~~~~~~~ 328 (349)
.+..+.....+|..+.|.-
T Consensus 677 llgs~~tK~tpv~~l~Ftr 695 (707)
T KOG0263|consen 677 LLGSFYTKNTPVVGLHFTR 695 (707)
T ss_pred eeeeeeecCceEEEEEEec
Confidence 4455555666888888855
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=242.34 Aligned_cols=289 Identities=16% Similarity=0.202 Sum_probs=237.0
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 85 (349)
..+..|..|+++|++++.+|+ .++++||+.|..-.+|++.++.....+.+|+..|+++.|+.+|.+||+|..+|.|+||
T Consensus 55 dS~~tF~~H~~svFavsl~P~-~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPN-NNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVF 133 (399)
T ss_pred cceeehhhcCCceEEEEeCCC-CceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEE
Confidence 457789999999999999996 8999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCC
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPE 165 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 165 (349)
...++.....+. ..-..+.-+.|+|.+..|+.|+.||.+..|.+.++...+.+. +|..++++=.|.|
T Consensus 134 ~~stg~~~~~~~---~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~-Gh~~~ct~G~f~p--------- 200 (399)
T KOG0296|consen 134 KVSTGGEQWKLD---QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMS-GHNSPCTCGEFIP--------- 200 (399)
T ss_pred EcccCceEEEee---cccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEec-CCCCCcccccccC---------
Confidence 999876544443 123678889999999999999999999999999888888898 9999999999999
Q ss_pred CCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEE---
Q 018858 166 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE--- 242 (349)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 242 (349)
+|+.++++..||+|++|++.+++...............+.++..+..+..
T Consensus 201 ---------------------------dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~ 253 (399)
T KOG0296|consen 201 ---------------------------DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNS 253 (399)
T ss_pred ---------------------------CCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccC
Confidence 89999999999999999999988776655333222233322222222211
Q ss_pred -------------------------------------------------eeeeeecCce---eeeeeeeecCCCcceEEE
Q 018858 243 -------------------------------------------------MEILDQSGGK---RLHLDYSVGGHTAAASCV 270 (349)
Q Consensus 243 -------------------------------------------------~~~~~~~~~~---~~~~~~~~~~h~~~i~~i 270 (349)
.|..|+.+.. ....++....|...|..+
T Consensus 254 e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l 333 (399)
T KOG0296|consen 254 EGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKL 333 (399)
T ss_pred CccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEE
Confidence 1111111110 001112233588899999
Q ss_pred EEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 271 AFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 271 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.|. + ..+|++++.||.|+.||.+++ .++..+.+|...|..+++.| +.++++|+|.|++.+||+++
T Consensus 334 ~w~---~-t~~l~t~c~~g~v~~wDaRtG---------~l~~~y~GH~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 334 KWL---N-TDYLLTACANGKVRQWDARTG---------QLKFTYTGHQMGILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEc---C-cchheeeccCceEEeeecccc---------ceEEEEecCchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 998 5 689999999999999999999 88999999999999999988 88899999999999999874
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=236.57 Aligned_cols=286 Identities=18% Similarity=0.195 Sum_probs=234.6
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECC-CCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLR-SKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
.+.-.+.+|++.|..+.|+|+ +..|++|+.|..|.+|++. ..+....+++|.+.|..+.|.++++.|++++.|.+|+.
T Consensus 38 ap~m~l~gh~geI~~~~F~P~-gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPD-GSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRG 116 (338)
T ss_pred chhhhcCCCcceEEEEEECCC-CCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEE
Confidence 345567899999999999997 8999999999999999954 44557888999999999999999999999999999999
Q ss_pred EEccCCCcccceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCC
Q 018858 85 FDVHMPASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
||.++++. +..++.|..-|..+.-+.-| .++.+++.|+++++||+|+...++++. ....++++.|..
T Consensus 117 wD~~tG~~---~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~--~kyqltAv~f~d------- 184 (338)
T KOG0265|consen 117 WDAETGKR---IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE--NKYQLTAVGFKD------- 184 (338)
T ss_pred Eeccccee---eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc--cceeEEEEEecc-------
Confidence 99998754 45566677888888754445 456788899999999999999988886 567899999998
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
.+..+.+|+-|+.|++||++.+.......+. ...|..++.+++|.++.+.
T Consensus 185 -----------------------------~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh-~DtIt~lsls~~gs~llsn 234 (338)
T KOG0265|consen 185 -----------------------------TSDQVISGGIDNDIKVWDLRKNDGLYTLSGH-ADTITGLSLSRYGSFLLSN 234 (338)
T ss_pred -----------------------------cccceeeccccCceeeeccccCcceEEeecc-cCceeeEEeccCCCccccc
Confidence 7888999999999999999987666655443 5678899999999999851
Q ss_pred ------eeeeecCce-eeeeeeeecCCCc----ceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceee
Q 018858 244 ------EILDQSGGK-RLHLDYSVGGHTA----AASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLI 312 (349)
Q Consensus 244 ------~~~~~~~~~-~~~~~~~~~~h~~----~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 312 (349)
-.++..... ...++..+.+|.. ....++|+ |++.++.+|+.|..+++||..+. .++.
T Consensus 235 sMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~csws---p~~~~i~ags~dr~vyvwd~~~r---------~~ly 302 (338)
T KOG0265|consen 235 SMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWS---PNGTKITAGSADRFVYVWDTTSR---------RILY 302 (338)
T ss_pred cccceEEEEEecccCCCCceEEEeecchhhhhhhcceeecc---CCCCccccccccceEEEeecccc---------cEEE
Confidence 122222211 2234556666532 34566777 89999999999999999999987 7888
Q ss_pred eccccccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 313 KNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 313 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
.+.+|.+.|+.++|+| ...+|.+++.|.+|++=.
T Consensus 303 klpGh~gsvn~~~Fhp-~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 303 KLPGHYGSVNEVDFHP-TEPIILSCSSDKTIYLGE 336 (338)
T ss_pred EcCCcceeEEEeeecC-CCcEEEEeccCceeEeec
Confidence 9999999999999999 556999999999998744
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=256.92 Aligned_cols=246 Identities=17% Similarity=0.251 Sum_probs=217.8
Q ss_pred eeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeec-CCCCeEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 018858 10 RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDV-GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVH 88 (349)
Q Consensus 10 ~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 88 (349)
.+++|..+|+++.|+++ +.++++|+.+|.|++|+..-. .++.++. |...|++++|+|+...+++++.||+|+|||..
T Consensus 133 ilQaHDs~Vr~m~ws~~-g~wmiSgD~gG~iKyWqpnmn-nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~ 210 (464)
T KOG0284|consen 133 ILQAHDSPVRTMKWSHN-GTWMISGDKGGMIKYWQPNMN-NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFR 210 (464)
T ss_pred HhhhhcccceeEEEccC-CCEEEEcCCCceEEecccchh-hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEecc
Confidence 35789999999999998 899999999999999997643 3455555 45999999999999999999999999999998
Q ss_pred CCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCC
Q 018858 89 MPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNG 168 (349)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 168 (349)
..+.. ..+.+|.-.|.+++|+|...++++|+.|..|++||.+++.++.++. .|...|..+.|+|
T Consensus 211 ~~kee---~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh-~HKntVl~~~f~~------------ 274 (464)
T KOG0284|consen 211 MPKEE---RVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLH-GHKNTVLAVKFNP------------ 274 (464)
T ss_pred CCchh---heeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhh-hccceEEEEEEcC------------
Confidence 65433 3457788899999999999999999999999999999999999999 9999999999999
Q ss_pred CCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeee
Q 018858 169 NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ 248 (349)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (349)
++++|++++.|..+++||+++-
T Consensus 275 ------------------------n~N~Llt~skD~~~kv~DiR~m---------------------------------- 296 (464)
T KOG0284|consen 275 ------------------------NGNWLLTGSKDQSCKVFDIRTM---------------------------------- 296 (464)
T ss_pred ------------------------CCCeeEEccCCceEEEEehhHh----------------------------------
Confidence 7899999999999999999952
Q ss_pred cCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeec
Q 018858 249 SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP 328 (349)
Q Consensus 249 ~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 328 (349)
+.+..+++|+..++++.|+| -...+|.+|+.||.|..|.+...+ ++.....+|...|++++|+|
T Consensus 297 ------kEl~~~r~Hkkdv~~~~WhP--~~~~lftsgg~Dgsvvh~~v~~~~--------p~~~i~~AHd~~iwsl~~hP 360 (464)
T KOG0284|consen 297 ------KELFTYRGHKKDVTSLTWHP--LNESLFTSGGSDGSVVHWVVGLEE--------PLGEIPPAHDGEIWSLAYHP 360 (464)
T ss_pred ------HHHHHhhcchhhheeecccc--ccccceeeccCCCceEEEeccccc--------cccCCCcccccceeeeeccc
Confidence 55678899999999999998 456799999999999999998432 55556678999999999999
Q ss_pred CCCCcEEEeeCCCeEEEeeC
Q 018858 329 TESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 329 ~~~~~l~~~~~dg~i~iw~~ 348 (349)
-|.+|++|+.|.++++|.-
T Consensus 361 -lGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 361 -LGHILATGSNDRTVRFWTR 379 (464)
T ss_pred -cceeEeecCCCcceeeecc
Confidence 7889999999999999963
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-38 Score=249.44 Aligned_cols=330 Identities=15% Similarity=0.122 Sum_probs=247.9
Q ss_pred CCccCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCC
Q 018858 1 MTDAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGK 80 (349)
Q Consensus 1 m~~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 80 (349)
|.+++..+..+.||...|.+++|-|...-.++||+.|+++.+|+=..-+-..++..|...|.++.|+|||+++++++.||
T Consensus 133 ~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDg 212 (603)
T KOG0318|consen 133 LWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDG 212 (603)
T ss_pred EecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCc
Confidence 45778889999999999999999998666799999999999998666666677888999999999999999999999999
Q ss_pred eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccc--cceeEEEEccCC
Q 018858 81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHS--SICSSVQFIPWK 158 (349)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~v~~~~~~~~~ 158 (349)
.+.+||-.+++....+..-.+|++.|.+++|+||+..|++++.|.+++|||+.+.++++++..+.. .....+-|..+.
T Consensus 213 ki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~ 292 (603)
T KOG0318|consen 213 KIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDH 292 (603)
T ss_pred cEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCe
Confidence 999999999887777776678999999999999999999999999999999999999888762222 233334454332
Q ss_pred CCCCCCCC----------CCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCC-----
Q 018858 159 PWEGLPEN----------NGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKST----- 223 (349)
Q Consensus 159 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----- 223 (349)
....+..+ .......-+...|.++++++ ++.+|++|+.||.|.-|+..++..-......
T Consensus 293 lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~------d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI 366 (603)
T KOG0318|consen 293 LITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP------DGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQI 366 (603)
T ss_pred EEEEEcCcEEEEecccCCChhheecccccceeEEEEcC------CCCEEEeeccCceEEEEecCCccccccccccccceE
Confidence 11111111 11222222446788999998 8999999999999999998764321110000
Q ss_pred -------------------------------------CCCccc-------------------------------------
Q 018858 224 -------------------------------------TKPLKG------------------------------------- 229 (349)
Q Consensus 224 -------------------------------------~~~~~~------------------------------------- 229 (349)
...+..
T Consensus 367 ~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~ 446 (603)
T KOG0318|consen 367 KGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYES 446 (603)
T ss_pred EEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeecccccc
Confidence 011111
Q ss_pred -eeeeeccccEEEEeeeeeecCce------eeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcce
Q 018858 230 -SQSTSKVNIRDAEMEILDQSGGK------RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGV 302 (349)
Q Consensus 230 -~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 302 (349)
+++++|++..++ .|..|+.+.. .......+..|.++|++++|+ ||+.|||++...+.+.+||+.+.+
T Consensus 447 s~vAv~~~~~~va-VGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vayS---pd~~yla~~Da~rkvv~yd~~s~~-- 520 (603)
T KOG0318|consen 447 SAVAVSPDGSEVA-VGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYS---PDGAYLAAGDASRKVVLYDVASRE-- 520 (603)
T ss_pred ceEEEcCCCCEEE-EecccceEEEEEecCCcccceeeeecccCCceEEEEC---CCCcEEEEeccCCcEEEEEcccCc--
Confidence 234444444444 2333322111 111222445689999999999 999999999999999999999974
Q ss_pred ecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 303 QTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.......-|...|++++|+| +...+|||+-|..|.||++.
T Consensus 521 ------~~~~~w~FHtakI~~~aWsP-~n~~vATGSlDt~Viiysv~ 560 (603)
T KOG0318|consen 521 ------VKTNRWAFHTAKINCVAWSP-NNKLVATGSLDTNVIIYSVK 560 (603)
T ss_pred ------eecceeeeeeeeEEEEEeCC-CceEEEeccccceEEEEEcc
Confidence 23334556999999999998 78899999999999999974
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=257.07 Aligned_cols=240 Identities=20% Similarity=0.280 Sum_probs=214.7
Q ss_pred ceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCccc
Q 018858 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWR 94 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 94 (349)
+.+|..+.|.|+ |+.|++|+..|...+|+...-.-...++.|..+|.++.|++++.++++|..+|.|++|+....
T Consensus 96 kc~V~~v~WtPe-GRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn---- 170 (464)
T KOG0284|consen 96 KCPVNVVRWTPE-GRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN---- 170 (464)
T ss_pred ccceeeEEEcCC-CceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh----
Confidence 357999999999 899999999999999997433333456789999999999999999999999999999998742
Q ss_pred ceeeccCc-ccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccc
Q 018858 95 PLESYNYN-KEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQC 173 (349)
Q Consensus 95 ~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 173 (349)
.++.++.| ...|++++|+|+...|+++++||.|+|||....+.-..+. +|.-.|.+++|+|
T Consensus 171 nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~-GHgwdVksvdWHP----------------- 232 (464)
T KOG0284|consen 171 NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLR-GHGWDVKSVDWHP----------------- 232 (464)
T ss_pred hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheec-cCCCCcceeccCC-----------------
Confidence 22333334 4889999999999999999999999999999888888888 9999999999999
Q ss_pred cCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCcee
Q 018858 174 YNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKR 253 (349)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (349)
...++++|+.|..|++||.+++
T Consensus 233 -------------------~kgLiasgskDnlVKlWDprSg--------------------------------------- 254 (464)
T KOG0284|consen 233 -------------------TKGLIASGSKDNLVKLWDPRSG--------------------------------------- 254 (464)
T ss_pred -------------------ccceeEEccCCceeEeecCCCc---------------------------------------
Confidence 6788999999999999999986
Q ss_pred eeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCc
Q 018858 254 LHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESEN 333 (349)
Q Consensus 254 ~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 333 (349)
.++.++.+|+..|..+.|+ +++++|+|+|.|..++++|+++. +.+..+.+|+..+++++|+|....+
T Consensus 255 -~cl~tlh~HKntVl~~~f~---~n~N~Llt~skD~~~kv~DiR~m---------kEl~~~r~Hkkdv~~~~WhP~~~~l 321 (464)
T KOG0284|consen 255 -SCLATLHGHKNTVLAVKFN---PNGNWLLTGSKDQSCKVFDIRTM---------KELFTYRGHKKDVTSLTWHPLNESL 321 (464)
T ss_pred -chhhhhhhccceEEEEEEc---CCCCeeEEccCCceEEEEehhHh---------HHHHHhhcchhhheeeccccccccc
Confidence 6778899999999999999 89999999999999999999976 6677899999999999999988889
Q ss_pred EEEeeCCCeEEEeeC
Q 018858 334 LVVCDTSKVVKVYSI 348 (349)
Q Consensus 334 l~~~~~dg~i~iw~~ 348 (349)
|.+++.||.|..|.+
T Consensus 322 ftsgg~Dgsvvh~~v 336 (464)
T KOG0284|consen 322 FTSGGSDGSVVHWVV 336 (464)
T ss_pred eeeccCCCceEEEec
Confidence 999999999999986
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=252.02 Aligned_cols=251 Identities=16% Similarity=0.272 Sum_probs=221.2
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK 83 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 83 (349)
+.+.++.|.||++.|.|+.|. .+.+++|+.|.+|++||+++++++.++-+|...|..+.|+ +.++++++.|.++.
T Consensus 226 ~~~c~~~L~GHtGSVLCLqyd---~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsia 300 (499)
T KOG0281|consen 226 SLECLKILTGHTGSVLCLQYD---ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIA 300 (499)
T ss_pred cHHHHHhhhcCCCcEEeeecc---ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeE
Confidence 346778899999999999996 4699999999999999999999999999999999999998 56999999999999
Q ss_pred EEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCC
Q 018858 84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
+||+...........+.+|...|..+.|+ .+++++++.|.+|++|++.+++.++++. +|...|-|+.+
T Consensus 301 VWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~-gHkRGIAClQY--------- 368 (499)
T KOG0281|consen 301 VWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLN-GHKRGIACLQY--------- 368 (499)
T ss_pred EEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhh-cccccceehhc---------
Confidence 99999876656666788999999999995 5699999999999999999999999999 99999999887
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
.++++++|+.|.+|++||+..+
T Consensus 369 -----------------------------r~rlvVSGSSDntIRlwdi~~G----------------------------- 390 (499)
T KOG0281|consen 369 -----------------------------RDRLVVSGSSDNTIRLWDIECG----------------------------- 390 (499)
T ss_pred -----------------------------cCeEEEecCCCceEEEEecccc-----------------------------
Confidence 5799999999999999999986
Q ss_pred eeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEE
Q 018858 244 EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNW 323 (349)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 323 (349)
.++..++||+.-|.++.|. .+.+++|+.||+|+|||+..+.+.......-.+.....|.+.|..
T Consensus 391 -----------~cLRvLeGHEeLvRciRFd-----~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFr 454 (499)
T KOG0281|consen 391 -----------ACLRVLEGHEELVRCIRFD-----NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFR 454 (499)
T ss_pred -----------HHHHHHhchHHhhhheeec-----CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEE
Confidence 7788899999999999985 578999999999999999987643222222355566789999999
Q ss_pred EEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 324 LCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 324 ~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
+.| |...+++++-|.+|-|||+
T Consensus 455 LQF---D~fqIvsssHddtILiWdF 476 (499)
T KOG0281|consen 455 LQF---DEFQIISSSHDDTILIWDF 476 (499)
T ss_pred Eee---cceEEEeccCCCeEEEEEc
Confidence 999 5557999999999999996
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=252.94 Aligned_cols=284 Identities=20% Similarity=0.296 Sum_probs=240.2
Q ss_pred CeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEc
Q 018858 8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDV 87 (349)
Q Consensus 8 ~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 87 (349)
+++|++|.++|++++|+|+ +++|++++.||.+++|++.+++....+..|...+..+.|+|+++++++++.+|.|++|++
T Consensus 2 ~~~~~~h~~~i~~~~~~~~-~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~ 80 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPD-GKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL 80 (289)
T ss_pred chHhcccCCCEEEEEEcCC-CCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEc
Confidence 5678899999999999998 899999999999999999988888888889999999999999999999999999999999
Q ss_pred cCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCC
Q 018858 88 HMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENN 167 (349)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 167 (349)
++++ .+..+..|...+.++.|+|+++++++++.++.|++||+++++....+. .|...+.+++|+|
T Consensus 81 ~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~i~~~~~~~----------- 145 (289)
T cd00200 81 ETGE---CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR-GHTDWVNSVAFSP----------- 145 (289)
T ss_pred Cccc---ceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec-cCCCcEEEEEEcC-----------
Confidence 8653 334445567789999999998889988889999999999888888888 8888999999999
Q ss_pred CCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeee
Q 018858 168 GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD 247 (349)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (349)
++.++++++.+|.|++||++..+...... .....+..+.|+|+++.+++.+. +
T Consensus 146 -------------------------~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~-~ 198 (289)
T cd00200 146 -------------------------DGTFVASSSQDGTIKLWDLRTGKCVATLT-GHTGEVNSVAFSPDGEKLLSSSS-D 198 (289)
T ss_pred -------------------------cCCEEEEEcCCCcEEEEEccccccceeEe-cCccccceEEECCCcCEEEEecC-C
Confidence 67888888889999999998766555444 33457899999999988876443 2
Q ss_pred ecC----ceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEE
Q 018858 248 QSG----GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNW 323 (349)
Q Consensus 248 ~~~----~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 323 (349)
+.+ .........+..|...+.++.|+ +++.++++++.|+.|++||+.++ .....+..|...+.+
T Consensus 199 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~i~i~~~~~~---------~~~~~~~~~~~~i~~ 266 (289)
T cd00200 199 GTIKLWDLSTGKCLGTLRGHENGVNSVAFS---PDGYLLASGSEDGTIRVWDLRTG---------ECVQTLSGHTNSVTS 266 (289)
T ss_pred CcEEEEECCCCceecchhhcCCceEEEEEc---CCCcEEEEEcCCCcEEEEEcCCc---------eeEEEccccCCcEEE
Confidence 221 12234555666788899999999 78889998888999999999976 555566688899999
Q ss_pred EEeecCCCCcEEEeeCCCeEEEee
Q 018858 324 LCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 324 ~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
++|++ ++++|++++.||.+++|+
T Consensus 267 ~~~~~-~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 267 LAWSP-DGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEECC-CCCEEEEecCCCeEEecC
Confidence 99988 678999999999999996
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-38 Score=266.96 Aligned_cols=287 Identities=21% Similarity=0.263 Sum_probs=241.9
Q ss_pred eeeeCC-ceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc--EEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 018858 9 RRLRGH-KATATCCIASRDRPGFVASSGEDGCICWFDLRSKD--VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 9 ~~l~~h-~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 85 (349)
+.+..| ...|.|+.|+++ ++.+++++.++.+++|+....+ ....+.+|...|..++|+|+++++++++.|++|+||
T Consensus 152 ~~~~~~~~~sv~~~~fs~~-g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 152 QTLAGHECPSVTCVDFSPD-GRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred eeecccccCceEEEEEcCC-CCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence 444444 788999999999 8889999999999999997777 677778899999999999999999999999999999
Q ss_pred EccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCC
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPE 165 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 165 (349)
|++.. ...+..+.+|...|++++|+|+++++++|+.|++|++||++++++...+. +|...|++++|++
T Consensus 231 d~~~~--~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~-~hs~~is~~~f~~--------- 298 (456)
T KOG0266|consen 231 DLKDD--GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK-GHSDGISGLAFSP--------- 298 (456)
T ss_pred eccCC--CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee-ccCCceEEEEECC---------
Confidence 99432 35677788999999999999999999999999999999999999999999 9999999999999
Q ss_pred CCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCce--eeeecCCCCCC-ccceeeeeccccEEEE
Q 018858 166 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL--NISRSKSTTKP-LKGSQSTSKVNIRDAE 242 (349)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 242 (349)
++++|++++.|+.|++||+.++. +.......... .+..+.|+|+++++++
T Consensus 299 ---------------------------d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~ 351 (456)
T KOG0266|consen 299 ---------------------------DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLS 351 (456)
T ss_pred ---------------------------CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEE
Confidence 89999999999999999999988 34555555444 7899999999999995
Q ss_pred eeee---eecCceeeeeeeeecCCCcceE---EEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccc
Q 018858 243 MEIL---DQSGGKRLHLDYSVGGHTAAAS---CVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNIN 316 (349)
Q Consensus 243 ~~~~---~~~~~~~~~~~~~~~~h~~~i~---~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 316 (349)
.... ..+..........+.+|...+. +...+ +.++++++|+.|+.|++||+.+. ..+....+
T Consensus 352 ~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~sg~~d~~v~~~~~~s~---------~~~~~l~~ 419 (456)
T KOG0266|consen 352 ASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLS---TGGKLIYSGSEDGSVYVWDSSSG---------GILQRLEG 419 (456)
T ss_pred ecCCCeEEEEEccCCcceeeecccCCcceeEeccccc---CCCCeEEEEeCCceEEEEeCCcc---------chhhhhcC
Confidence 3221 1122333455566777766433 33334 78999999999999999999987 67778888
Q ss_pred c-ccceEEEEeecCCCCcEEEee--CCCeEEEeeC
Q 018858 317 L-NKKVNWLCTTPTESENLVVCD--TSKVVKVYSI 348 (349)
Q Consensus 317 ~-~~~v~~~~~~~~~~~~l~~~~--~dg~i~iw~~ 348 (349)
| ...+..+.+++ ..+++++++ .|+.+++|..
T Consensus 420 h~~~~~~~~~~~~-~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 420 HSKAAVSDLSSHP-TENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred CCCCceeccccCC-CcCeeeecCcCCCceEEEecC
Confidence 9 88899999988 666888887 7999999974
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=255.98 Aligned_cols=280 Identities=16% Similarity=0.234 Sum_probs=248.6
Q ss_pred CceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCC-CeEEEEEccCCCc
Q 018858 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG-KEVKSFDVHMPAS 92 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~ 92 (349)
....|+|.+|++. .+.|++|-..|...+|.+..-.+++.+.-...+|..++|+..|+.||.|+.. |.+-||++++.
T Consensus 264 ~~~kvtaa~fH~~-t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE-- 340 (893)
T KOG0291|consen 264 NSSKVTAAAFHKG-TNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE-- 340 (893)
T ss_pred cccceeeeeccCC-ceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecc--
Confidence 3478999999997 8999999999999999999999999999888999999999999999998765 89999999864
Q ss_pred ccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCcc
Q 018858 93 WRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQ 172 (349)
Q Consensus 93 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 172 (349)
..+-..++|...+++++++|||+++|+|++||.|+|||..++-|..+|. .|.+.|+.+.|+.
T Consensus 341 -sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFt-eHts~Vt~v~f~~---------------- 402 (893)
T KOG0291|consen 341 -SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFT-EHTSGVTAVQFTA---------------- 402 (893)
T ss_pred -ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEec-cCCCceEEEEEEe----------------
Confidence 2333456788999999999999999999999999999999999999999 9999999999999
Q ss_pred ccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeec---
Q 018858 173 CYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS--- 249 (349)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 249 (349)
.++.+++++.||+|+.||+...+.-+++..+.+.+..+++..|.|..++ +|..|..
T Consensus 403 --------------------~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~-AG~~d~F~If 461 (893)
T KOG0291|consen 403 --------------------RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVC-AGAQDSFEIF 461 (893)
T ss_pred --------------------cCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEE-eeccceEEEE
Confidence 8999999999999999999998888899999889999999999999888 4444433
Q ss_pred --CceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEee
Q 018858 250 --GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTT 327 (349)
Q Consensus 250 --~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 327 (349)
...+++++..+.||+++|.++.|+ |.+..|+++|.|.+||+||+-.. .-......+...+..++|.
T Consensus 462 vWS~qTGqllDiLsGHEgPVs~l~f~---~~~~~LaS~SWDkTVRiW~if~s---------~~~vEtl~i~sdvl~vsfr 529 (893)
T KOG0291|consen 462 VWSVQTGQLLDILSGHEGPVSGLSFS---PDGSLLASGSWDKTVRIWDIFSS---------SGTVETLEIRSDVLAVSFR 529 (893)
T ss_pred EEEeecCeeeehhcCCCCcceeeEEc---cccCeEEeccccceEEEEEeecc---------CceeeeEeeccceeEEEEc
Confidence 234667888899999999999999 89999999999999999998775 2223445677889999998
Q ss_pred cCCCCcEEEeeCCCeEEEeeC
Q 018858 328 PTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 328 ~~~~~~l~~~~~dg~i~iw~~ 348 (349)
| +|+-|++++.||.|.+||.
T Consensus 530 P-dG~elaVaTldgqItf~d~ 549 (893)
T KOG0291|consen 530 P-DGKELAVATLDGQITFFDI 549 (893)
T ss_pred C-CCCeEEEEEecceEEEEEh
Confidence 8 8999999999999999996
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=224.09 Aligned_cols=246 Identities=16% Similarity=0.156 Sum_probs=216.0
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 85 (349)
+.++.|..|+++|.++.|+-+ |+|.++++.|.+|++|+...+.+++++.+|...|..++.+.++..+++|+.|+.+.+|
T Consensus 8 kr~~~l~~~qgaV~avryN~d-GnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVD-GNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVW 86 (307)
T ss_pred hhceeecccccceEEEEEccC-CCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEE
Confidence 467788999999999999998 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCC--ceEeceeccccccceeEEEEccCCCCCCC
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ--HCLYKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
|++++ +.+..+.+|...|+.++|+.+...+++|+-|..+++||.++ .++++.+. .....|.++...
T Consensus 87 DV~TG---kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQild-ea~D~V~Si~v~-------- 154 (307)
T KOG0316|consen 87 DVNTG---KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILD-EAKDGVSSIDVA-------- 154 (307)
T ss_pred EcccC---eeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhh-hhcCceeEEEec--------
Confidence 99987 55667788999999999999999999999999999999985 46777777 677788888774
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
+..++.|+.||+++.||++.+
T Consensus 155 ------------------------------~heIvaGS~DGtvRtydiR~G----------------------------- 175 (307)
T KOG0316|consen 155 ------------------------------EHEIVAGSVDGTVRTYDIRKG----------------------------- 175 (307)
T ss_pred ------------------------------ccEEEeeccCCcEEEEEeecc-----------------------------
Confidence 477999999999999999975
Q ss_pred eeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEE
Q 018858 244 EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNW 323 (349)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 323 (349)
.....+.+ .+|+++.|+ ++++..+.++.|+++++.|-.++ +++..+.+|.+.-..
T Consensus 176 -----------~l~sDy~g--~pit~vs~s---~d~nc~La~~l~stlrLlDk~tG---------klL~sYkGhkn~eyk 230 (307)
T KOG0316|consen 176 -----------TLSSDYFG--HPITSVSFS---KDGNCSLASSLDSTLRLLDKETG---------KLLKSYKGHKNMEYK 230 (307)
T ss_pred -----------eeehhhcC--CcceeEEec---CCCCEEEEeeccceeeecccchh---------HHHHHhcccccceee
Confidence 33333443 479999999 89999999999999999999998 888899999887665
Q ss_pred EEeec-CCCCcEEEeeCCCeEEEeeC
Q 018858 324 LCTTP-TESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 324 ~~~~~-~~~~~l~~~~~dg~i~iw~~ 348 (349)
+..+- .....+++|++||.|++||+
T Consensus 231 ldc~l~qsdthV~sgSEDG~Vy~wdL 256 (307)
T KOG0316|consen 231 LDCCLNQSDTHVFSGSEDGKVYFWDL 256 (307)
T ss_pred eeeeecccceeEEeccCCceEEEEEe
Confidence 54332 23457999999999999997
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-38 Score=256.18 Aligned_cols=252 Identities=17% Similarity=0.300 Sum_probs=229.0
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
++..+.+..|+..|.++.++|. ...++++-.+|.+.|||.+++..+..+.....||.+..|-+..+.+++|+.|..|+|
T Consensus 3 l~~krk~~~rSdRVKsVd~HPt-ePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrV 81 (794)
T KOG0276|consen 3 LDFKRKFQSRSDRVKSVDFHPT-EPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRV 81 (794)
T ss_pred chhhhHhhccCCceeeeecCCC-CceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEE
Confidence 3455677789999999999999 788999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcC-CceEeceeccccccceeEEEEccCCCCCCC
Q 018858 85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIR-QHCLYKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
|+..++ ..+..+.+|.+.+.+++.+|...+++++++|-.|++||.+ ...+.+++. +|..-|.+++|+|.
T Consensus 82 fnynt~---ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfe-GH~HyVMqv~fnPk------ 151 (794)
T KOG0276|consen 82 FNYNTG---EKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFE-GHEHYVMQVAFNPK------ 151 (794)
T ss_pred Eecccc---eeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEc-CcceEEEEEEecCC------
Confidence 999986 5567788899999999999999999999999999999998 457788899 99999999999996
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
|.+.+++++-|++|++|.+.+.
T Consensus 152 -----------------------------D~ntFaS~sLDrTVKVWslgs~----------------------------- 173 (794)
T KOG0276|consen 152 -----------------------------DPNTFASASLDRTVKVWSLGSP----------------------------- 173 (794)
T ss_pred -----------------------------CccceeeeeccccEEEEEcCCC-----------------------------
Confidence 8899999999999999999874
Q ss_pred eeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEE
Q 018858 244 EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNW 323 (349)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 323 (349)
.+..++.+|...|+++.+-+- +|..||++|+.|.+|+|||.++. .+++++.+|...|..
T Consensus 174 -----------~~nfTl~gHekGVN~Vdyy~~-gdkpylIsgaDD~tiKvWDyQtk---------~CV~TLeGHt~Nvs~ 232 (794)
T KOG0276|consen 174 -----------HPNFTLEGHEKGVNCVDYYTG-GDKPYLISGADDLTIKVWDYQTK---------SCVQTLEGHTNNVSF 232 (794)
T ss_pred -----------CCceeeeccccCcceEEeccC-CCcceEEecCCCceEEEeecchH---------HHHHHhhcccccceE
Confidence 667889999999999999842 34569999999999999999998 778889999999999
Q ss_pred EEeecCCCCcEEEeeCCCeEEEee
Q 018858 324 LCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 324 ~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
+.|+| .-.++++|+.||+++||+
T Consensus 233 v~fhp-~lpiiisgsEDGTvriWh 255 (794)
T KOG0276|consen 233 VFFHP-ELPIIISGSEDGTVRIWN 255 (794)
T ss_pred EEecC-CCcEEEEecCCccEEEec
Confidence 99998 444899999999999997
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=242.28 Aligned_cols=287 Identities=17% Similarity=0.176 Sum_probs=240.2
Q ss_pred CeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC--c--EEEEee----------cCCCCeEEEEEecCCCEE
Q 018858 8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK--D--VQLVTD----------VGNGPVTSLCFKSGNEDI 73 (349)
Q Consensus 8 ~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~--~--~~~~~~----------~~~~~v~~~~~~~~~~~l 73 (349)
++.+. |+.+|.+++|+|-....+++|+.|-..++|++... . ....++ ..+..|++++|+.+|..|
T Consensus 172 ~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~L 250 (524)
T KOG0273|consen 172 AKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLL 250 (524)
T ss_pred eeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeE
Confidence 34455 99999999999984448999999999999998741 1 111111 134689999999999999
Q ss_pred EEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEE
Q 018858 74 IYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQ 153 (349)
Q Consensus 74 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~ 153 (349)
|+|+.||.+++|+... ..+..+..|+++|.++.|+.+|.+|++++.|+++.+||..++...+.+. .|..+-..+.
T Consensus 251 atG~~~G~~riw~~~G----~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~-~~s~~~lDVd 325 (524)
T KOG0273|consen 251 ATGSEDGEARIWNKDG----NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFE-FHSAPALDVD 325 (524)
T ss_pred EEeecCcEEEEEecCc----hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeee-eccCCccceE
Confidence 9999999999999863 4556677789999999999999999999999999999999999999988 7777767788
Q ss_pred EccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeee
Q 018858 154 FIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQST 233 (349)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 233 (349)
|.. ...|++.+.||.|+++.+.......++.+ +...+..+.|
T Consensus 326 W~~-------------------------------------~~~F~ts~td~~i~V~kv~~~~P~~t~~G-H~g~V~alk~ 367 (524)
T KOG0273|consen 326 WQS-------------------------------------NDEFATSSTDGCIHVCKVGEDRPVKTFIG-HHGEVNALKW 367 (524)
T ss_pred Eec-------------------------------------CceEeecCCCceEEEEEecCCCcceeeec-ccCceEEEEE
Confidence 865 56799999999999999998777777777 7899999999
Q ss_pred eccccEEEEeeeeeec----CceeeeeeeeecCCCcceEEEEEeeecC------CccEEEEeeCCCeEEEEecCCCccee
Q 018858 234 SKVNIRDAEMEILDQS----GGKRLHLDYSVGGHTAAASCVAFSMFGE------RGKYLISGGNDKLVKVWDCSRFQGVQ 303 (349)
Q Consensus 234 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~h~~~i~~i~~~~~~~------~~~~l~s~~~d~~i~vwd~~~~~~~~ 303 (349)
+|.|..|++ .+.|.+ ..........+.+|...|+.+.|+|.+| .+..+++++.|++|++||+..+
T Consensus 368 n~tg~LLaS-~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g---- 442 (524)
T KOG0273|consen 368 NPTGSLLAS-CSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG---- 442 (524)
T ss_pred CCCCceEEE-ecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC----
Confidence 999999995 333332 2334456778899999999999995322 2447999999999999999998
Q ss_pred cccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 304 TSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 304 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.++..+..|..+|.+++|+| +++++++|+.||.|++|+.+
T Consensus 443 -----v~i~~f~kH~~pVysvafS~-~g~ylAsGs~dg~V~iws~~ 482 (524)
T KOG0273|consen 443 -----VPIHTLMKHQEPVYSVAFSP-NGRYLASGSLDGCVHIWSTK 482 (524)
T ss_pred -----ceeEeeccCCCceEEEEecC-CCcEEEecCCCCeeEecccc
Confidence 78888999999999999988 89999999999999999863
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=219.08 Aligned_cols=269 Identities=17% Similarity=0.190 Sum_probs=220.8
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc--EEEEeecCCCCeEEEEEecCCCEEEEEeCCCe
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD--VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKE 81 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 81 (349)
++.+.++++.....|+.+...|+ ++.||+++. ..|++||+.+++ ++.++.+|...|+++.|..+|+.+++|++||+
T Consensus 29 tG~C~rTiqh~dsqVNrLeiTpd-k~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt 106 (311)
T KOG0315|consen 29 TGICSRTIQHPDSQVNRLEITPD-KKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGT 106 (311)
T ss_pred cCeEEEEEecCccceeeEEEcCC-cchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCce
Confidence 67888999977888999999999 788888875 589999998765 58999999999999999999999999999999
Q ss_pred EEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCC
Q 018858 82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE 161 (349)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 161 (349)
++|||++.....+ .+ .+..+|+++..+|+...|++|..+|.|++||+....+...+.+.....|.++...|
T Consensus 107 ~kIWdlR~~~~qR---~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~----- 177 (311)
T KOG0315|consen 107 VKIWDLRSLSCQR---NY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMP----- 177 (311)
T ss_pred EEEEeccCcccch---hc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcC-----
Confidence 9999999743322 22 24589999999999999999999999999999988776666535556788888888
Q ss_pred CCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeec-----CCCCCCccceeeeecc
Q 018858 162 GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS-----KSTTKPLKGSQSTSKV 236 (349)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 236 (349)
+|.+++.+...|..++|++-..+....+ .......+....+|||
T Consensus 178 -------------------------------dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd 226 (311)
T KOG0315|consen 178 -------------------------------DGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPD 226 (311)
T ss_pred -------------------------------CCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCC
Confidence 8999999999999999999874332222 2223456778899999
Q ss_pred ccEEEEeeeeee-cC--c-eeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceee
Q 018858 237 NIRDAEMEILDQ-SG--G-KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLI 312 (349)
Q Consensus 237 ~~~~~~~~~~~~-~~--~-~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 312 (349)
+++|+++++... .+ . ..++....+.+|...+..++|| .||+||++|+.|+.+++||+..+ +.+.
T Consensus 227 ~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS---~dg~YlvTassd~~~rlW~~~~~---------k~v~ 294 (311)
T KOG0315|consen 227 VKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFS---ADGEYLVTASSDHTARLWDLSAG---------KEVR 294 (311)
T ss_pred CcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeec---cCccEEEecCCCCceeecccccC---------ceee
Confidence 999997543221 11 1 1246667889999999999999 99999999999999999999998 6677
Q ss_pred eccccccceEEEEe
Q 018858 313 KNINLNKKVNWLCT 326 (349)
Q Consensus 313 ~~~~~~~~v~~~~~ 326 (349)
...+|.....+++.
T Consensus 295 qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 295 QYQGHHKAAVCVAL 308 (311)
T ss_pred ecCCcccccEEEEe
Confidence 88888887777765
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=225.89 Aligned_cols=247 Identities=16% Similarity=0.200 Sum_probs=214.1
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC------cEEEEeecCCCCeEEEEEecCCCEEEEEe
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK------DVQLVTDVGNGPVTSLCFKSGNEDIIYVS 77 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 77 (349)
+...++.++-....|..++|+|. ++++|.|+.|....||++.+. +..+.+.+|.+.+.++.|.++ ..|++++
T Consensus 86 TtnK~haipl~s~WVMtCA~sPS-g~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~S 163 (343)
T KOG0286|consen 86 TTNKVHAIPLPSSWVMTCAYSPS-GNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGS 163 (343)
T ss_pred cccceeEEecCceeEEEEEECCC-CCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecC
Confidence 34566777777888999999999 999999999999999999855 335678899999999999874 5699999
Q ss_pred CCCeEEEEEccCCCcccceeeccCcccceEEEEEcc-CCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEcc
Q 018858 78 SGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNP-KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 78 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
.|.+..+||++++ +.+..+.+|.+.|.+++++| +++.|++|+-|+..++||+|.+.+.+.|. +|+..|.++.|.|
T Consensus 164 GD~TCalWDie~g---~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~-ghesDINsv~ffP 239 (343)
T KOG0286|consen 164 GDMTCALWDIETG---QQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFE-GHESDINSVRFFP 239 (343)
T ss_pred CCceEEEEEcccc---eEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeec-ccccccceEEEcc
Confidence 9999999999987 45567788999999999999 89999999999999999999999999999 9999999999999
Q ss_pred CCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCC-CCCccceeeeec
Q 018858 157 WKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKST-TKPLKGSQSTSK 235 (349)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~ 235 (349)
+|.-|++|+.|++.++||++..+.+.....+ ....+.+++||.
T Consensus 240 ------------------------------------~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~ 283 (343)
T KOG0286|consen 240 ------------------------------------SGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSK 283 (343)
T ss_pred ------------------------------------CCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcc
Confidence 8999999999999999999998877755543 457789999999
Q ss_pred cccEEEEee---eeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEe
Q 018858 236 VNIRDAEME---ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD 295 (349)
Q Consensus 236 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd 295 (349)
.|++|.+.. ....+.....+....+.+|...|+++..+ |||.-+++|+.|.+++||.
T Consensus 284 SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s---~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 284 SGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVS---PDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEEC---CCCcEEEecchhHheeecC
Confidence 999998521 12223333445667788999999999999 9999999999999999994
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-37 Score=253.90 Aligned_cols=322 Identities=18% Similarity=0.197 Sum_probs=244.4
Q ss_pred cCCCCeeeeC-CceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCE--EEEEeCCC
Q 018858 4 AEAKPRRLRG-HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNED--IIYVSSGK 80 (349)
Q Consensus 4 ~~~~~~~l~~-h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~dg 80 (349)
+++.++.++. |++||.-++|+|. +.++++|+.|+.++|||+..+.+...+++|.+.|.++.|+|+-++ |++|..|+
T Consensus 93 tgk~irswKa~He~Pvi~ma~~~~-g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~ 171 (775)
T KOG0319|consen 93 TGKLIRSWKAIHEAPVITMAFDPT-GTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDG 171 (775)
T ss_pred cchHhHhHhhccCCCeEEEEEcCC-CceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCc
Confidence 5677888888 9999999999999 799999999999999999999999999999999999999997654 88899999
Q ss_pred eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccC---
Q 018858 81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPW--- 157 (349)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~--- 157 (349)
.+++||+++... .+..+..|.+.|+++++.+++..++++++|..+.+||+.+.+..+.++ ....+.++.+.++
T Consensus 172 ~v~vwnl~~~~t--cl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp--~ye~~E~vv~l~~~~~ 247 (775)
T KOG0319|consen 172 TVRVWNLNDKRT--CLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLP--LYESLESVVRLREELG 247 (775)
T ss_pred eEEEEEcccCch--HHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheec--hhhheeeEEEechhcC
Confidence 999999996532 566677889999999999999999999999999999997665554443 1122333333222
Q ss_pred --CCCC---------------------------------------------CCCCCC-----------------------
Q 018858 158 --KPWE---------------------------------------------GLPENN----------------------- 167 (349)
Q Consensus 158 --~~~~---------------------------------------------~~~~~~----------------------- 167 (349)
+.|. ...|++
T Consensus 248 ~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~ 327 (775)
T KOG0319|consen 248 GKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEIL 327 (775)
T ss_pred CcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhhe
Confidence 1111 000000
Q ss_pred -----------------CCCcccc------------CCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeee
Q 018858 168 -----------------GNAGQCY------------NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS 218 (349)
Q Consensus 168 -----------------~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 218 (349)
.+..+.. +...+.++++.. +|.+|++|+.|.++++|.++++....
T Consensus 328 Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~------~g~llat~sKD~svilWr~~~~~~~~ 401 (775)
T KOG0319|consen 328 DMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWS------SGDLLATGSKDKSVILWRLNNNCSKS 401 (775)
T ss_pred eeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecc------cCcEEEEecCCceEEEEEecCCcchh
Confidence 0000000 111223333222 56789999999999999885543322
Q ss_pred ---ecCCCCCCccceeeeeccccEEEEeeeeeecCce-------------eeeeeeeecCCCcceEEEEEeeecCCccEE
Q 018858 219 ---RSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGK-------------RLHLDYSVGGHTAAASCVAFSMFGERGKYL 282 (349)
Q Consensus 219 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l 282 (349)
.....+.+.+.+++++..+..+.+.++.|.++.. ...+......|...|++++++ |+.+++
T Consensus 402 ~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia---~ndkLi 478 (775)
T KOG0319|consen 402 LCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIA---PNDKLI 478 (775)
T ss_pred hhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEec---CCCceE
Confidence 2334556778889998888777777776665332 111222445799999999999 899999
Q ss_pred EEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 283 ISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 283 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
+|||.|++.+||+++.. .++..+.+|...|.++.|++ ..+.++|+|.|++|+||.++
T Consensus 479 AT~SqDktaKiW~le~~---------~l~~vLsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is 535 (775)
T KOG0319|consen 479 ATGSQDKTAKIWDLEQL---------RLLGVLSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSIS 535 (775)
T ss_pred EecccccceeeecccCc---------eEEEEeeCCccceEEEEecc-ccceeEeccCCceEEEEEec
Confidence 99999999999999976 78889999999999999988 55699999999999999974
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=239.50 Aligned_cols=230 Identities=20% Similarity=0.317 Sum_probs=204.3
Q ss_pred CceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcc
Q 018858 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASW 93 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (349)
..+.|.|+.+. ...+++|..|.+|+|||..+..+...+.+|.+.|.|+.|. .+.|++|+.|.+|++||++++
T Consensus 196 ~skgVYClQYD---D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tg--- 267 (499)
T KOG0281|consen 196 NSKGVYCLQYD---DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTG--- 267 (499)
T ss_pred cCCceEEEEec---chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCC---
Confidence 45679999885 4689999999999999999999999999999999999986 568999999999999999987
Q ss_pred cceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCce---EeceeccccccceeEEEEccCCCCCCCCCCCCCC
Q 018858 94 RPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC---LYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNA 170 (349)
Q Consensus 94 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 170 (349)
++++.+-.|.+.|..+.|+ +.++++++.|.++.+||+.... +.+.+. +|...|..+.|+
T Consensus 268 e~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLv-GHrAaVNvVdfd--------------- 329 (499)
T KOG0281|consen 268 EPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLV-GHRAAVNVVDFD--------------- 329 (499)
T ss_pred chhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHh-hhhhheeeeccc---------------
Confidence 4556666788999999997 4599999999999999998654 345567 899999999984
Q ss_pred ccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecC
Q 018858 171 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG 250 (349)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (349)
.+++++++.|.+|++|++.+.
T Consensus 330 -----------------------~kyIVsASgDRTikvW~~st~------------------------------------ 350 (499)
T KOG0281|consen 330 -----------------------DKYIVSASGDRTIKVWSTSTC------------------------------------ 350 (499)
T ss_pred -----------------------cceEEEecCCceEEEEeccce------------------------------------
Confidence 579999999999999999985
Q ss_pred ceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCC
Q 018858 251 GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTE 330 (349)
Q Consensus 251 ~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 330 (349)
+++.++.+|...|-|+.+ +++++++|+.|.+|++||++.+ .++..+.+|..-|.++.| +
T Consensus 351 ----efvRtl~gHkRGIAClQY-----r~rlvVSGSSDntIRlwdi~~G---------~cLRvLeGHEeLvRciRF---d 409 (499)
T KOG0281|consen 351 ----EFVRTLNGHKRGIACLQY-----RDRLVVSGSSDNTIRLWDIECG---------ACLRVLEGHEELVRCIRF---D 409 (499)
T ss_pred ----eeehhhhcccccceehhc-----cCeEEEecCCCceEEEEecccc---------HHHHHHhchHHhhhheee---c
Confidence 788899999999999986 5899999999999999999999 888899999999999999 5
Q ss_pred CCcEEEeeCCCeEEEeeCC
Q 018858 331 SENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 331 ~~~l~~~~~dg~i~iw~~~ 349 (349)
.+.+++|+.||+|+|||+.
T Consensus 410 ~krIVSGaYDGkikvWdl~ 428 (499)
T KOG0281|consen 410 NKRIVSGAYDGKIKVWDLQ 428 (499)
T ss_pred CceeeeccccceEEEEecc
Confidence 5589999999999999973
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=224.71 Aligned_cols=246 Identities=18% Similarity=0.220 Sum_probs=212.1
Q ss_pred CceeeeEEEEecCCCceEEEeCCCCcEEEEECCC-CcEEEEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEEccCCC
Q 018858 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRS-KDVQLVTDVGNGPVTSLCFKS-GNEDIIYVSSGKEVKSFDVHMPA 91 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~ 91 (349)
-.+.+..++|+++..+.+++++.||++++||+.. ..++..++.|...|.++.|++ .++.+++++.|++|++|+...+
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~- 137 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP- 137 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC-
Confidence 3577999999998888999999999999999653 356888999999999999998 4556788899999999998754
Q ss_pred cccceeeccCcccceEEEEEccC-CCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCC
Q 018858 92 SWRPLESYNYNKEEINQIVCNPK-SSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNA 170 (349)
Q Consensus 92 ~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 170 (349)
..+.++.+|..-|...+|+|. .+.|++++.|+.+++||++..-....+. .|...+.++.|+.-
T Consensus 138 --~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~-ah~~Eil~cdw~ky------------- 201 (311)
T KOG0277|consen 138 --NSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIE-AHNSEILCCDWSKY------------- 201 (311)
T ss_pred --cceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEE-eccceeEeeccccc-------------
Confidence 566778889999999999995 5899999999999999999543334477 78899999999883
Q ss_pred ccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecC
Q 018858 171 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG 250 (349)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (349)
+.+.|++|+.|+.|+.||+++-+
T Consensus 202 ----------------------~~~vl~Tg~vd~~vr~wDir~~r----------------------------------- 224 (311)
T KOG0277|consen 202 ----------------------NHNVLATGGVDNLVRGWDIRNLR----------------------------------- 224 (311)
T ss_pred ----------------------CCcEEEecCCCceEEEEehhhcc-----------------------------------
Confidence 67899999999999999999732
Q ss_pred ceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCC
Q 018858 251 GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTE 330 (349)
Q Consensus 251 ~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 330 (349)
.++..+.+|.-.|+.+.|+| .....|++++.|-+++|||...+. ..+.....|..-+..+.|++.+
T Consensus 225 ----~pl~eL~gh~~AVRkvk~Sp--h~~~lLaSasYDmT~riw~~~~~d--------s~~e~~~~HtEFv~g~Dws~~~ 290 (311)
T KOG0277|consen 225 ----TPLFELNGHGLAVRKVKFSP--HHASLLASASYDMTVRIWDPERQD--------SAIETVDHHTEFVCGLDWSLFD 290 (311)
T ss_pred ----ccceeecCCceEEEEEecCc--chhhHhhhccccceEEecccccch--------hhhhhhhccceEEecccccccc
Confidence 45677899999999999997 456799999999999999998764 4555666789999999999988
Q ss_pred CCcEEEeeCCCeEEEee
Q 018858 331 SENLVVCDTSKVVKVYS 347 (349)
Q Consensus 331 ~~~l~~~~~dg~i~iw~ 347 (349)
+.++++++.|+.++||+
T Consensus 291 ~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 291 PGQVASTGWDELLYVWN 307 (311)
T ss_pred Cceeeecccccceeeec
Confidence 88999999999999997
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-36 Score=248.07 Aligned_cols=258 Identities=17% Similarity=0.231 Sum_probs=214.7
Q ss_pred CeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEc
Q 018858 8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDV 87 (349)
Q Consensus 8 ~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 87 (349)
+...++|...++|++++|| |++++||+.||.|+|||...+-+..++..|+..|+.+.|+..++.+++.+-||+|+.||+
T Consensus 343 VlKQQgH~~~i~~l~YSpD-gq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDl 421 (893)
T KOG0291|consen 343 VLKQQGHSDRITSLAYSPD-GQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDL 421 (893)
T ss_pred eeeccccccceeeEEECCC-CcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeee
Confidence 4455799999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCc-EEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCC
Q 018858 88 HMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGD-VKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPEN 166 (349)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 166 (349)
......+.+... ......|++..|.|..+.+|+.|.. |++|++++|+.+..+. +|+++|.+++|+|
T Consensus 422 kRYrNfRTft~P--~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLs-GHEgPVs~l~f~~---------- 488 (893)
T KOG0291|consen 422 KRYRNFRTFTSP--EPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILS-GHEGPVSGLSFSP---------- 488 (893)
T ss_pred cccceeeeecCC--CceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhc-CCCCcceeeEEcc----------
Confidence 865443333321 1235678899999999999988764 9999999999999999 9999999999999
Q ss_pred CCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeee
Q 018858 167 NGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEIL 246 (349)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (349)
.+..|++++.|.+|++||+-...
T Consensus 489 --------------------------~~~~LaS~SWDkTVRiW~if~s~------------------------------- 511 (893)
T KOG0291|consen 489 --------------------------DGSLLASGSWDKTVRIWDIFSSS------------------------------- 511 (893)
T ss_pred --------------------------ccCeEEeccccceEEEEEeeccC-------------------------------
Confidence 78999999999999999997531
Q ss_pred eecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccc-----------cceeeecc
Q 018858 247 DQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSIN-----------NDLLIKNI 315 (349)
Q Consensus 247 ~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-----------~~~~~~~~ 315 (349)
....++. +...+..++|. |+|+.|+++..||.|.+||.+.+.+...... ........
T Consensus 512 --------~~vEtl~-i~sdvl~vsfr---PdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~s 579 (893)
T KOG0291|consen 512 --------GTVETLE-IRSDVLAVSFR---PDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENS 579 (893)
T ss_pred --------ceeeeEe-eccceeEEEEc---CCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhc
Confidence 1223333 45678999999 9999999999999999999998765533211 11111222
Q ss_pred ccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 316 NLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 316 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
......+.+++++ ||.++++||....|++|+++
T Consensus 580 a~~K~Ftti~ySa-DG~~IlAgG~sn~iCiY~v~ 612 (893)
T KOG0291|consen 580 AKGKTFTTICYSA-DGKCILAGGESNSICIYDVP 612 (893)
T ss_pred ccCCceEEEEEcC-CCCEEEecCCcccEEEEECc
Confidence 3446789999987 99999999999999999974
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=250.38 Aligned_cols=248 Identities=19% Similarity=0.243 Sum_probs=218.4
Q ss_pred eeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc----EEEEeecCCCCeEEEEEecCC-CEEEEEeCCCeEE
Q 018858 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD----VQLVTDVGNGPVTSLCFKSGN-EDIIYVSSGKEVK 83 (349)
Q Consensus 9 ~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~ 83 (349)
+.+.||++.|.++....+ |.+|+||+.|.++++|.++++. ++....+|...|.+++++..+ .+++++|.|++++
T Consensus 359 ~ii~GH~e~vlSL~~~~~-g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK 437 (775)
T KOG0319|consen 359 QIIPGHTEAVLSLDVWSS-GDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLK 437 (775)
T ss_pred EEEeCchhheeeeeeccc-CcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEE
Confidence 377899999999996666 6899999999999999885443 245567899999999997644 5689999999999
Q ss_pred EEEccCCCccc--cee----eccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccC
Q 018858 84 SFDVHMPASWR--PLE----SYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPW 157 (349)
Q Consensus 84 iwd~~~~~~~~--~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 157 (349)
+|++...+... ... ....|...|++++++|+.+++|+|+.|++.+||++.+.....++. +|...+.++.|+|
T Consensus 438 ~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLs-GH~RGvw~V~Fs~- 515 (775)
T KOG0319|consen 438 LWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLS-GHTRGVWCVSFSK- 515 (775)
T ss_pred EecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEee-CCccceEEEEecc-
Confidence 99998622211 111 235688999999999999999999999999999999999999999 9999999999999
Q ss_pred CCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccc
Q 018858 158 KPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVN 237 (349)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (349)
..+.+++++.|++|+||.+.+.
T Consensus 516 -----------------------------------~dq~laT~SgD~TvKIW~is~f----------------------- 537 (775)
T KOG0319|consen 516 -----------------------------------NDQLLATCSGDKTVKIWSISTF----------------------- 537 (775)
T ss_pred -----------------------------------ccceeEeccCCceEEEEEeccc-----------------------
Confidence 7899999999999999999975
Q ss_pred cEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecccc
Q 018858 238 IRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL 317 (349)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 317 (349)
.+++++.||...|..+.|- .+++.|++++.||.|++|++++. .++..+..|
T Consensus 538 -----------------SClkT~eGH~~aVlra~F~---~~~~qliS~~adGliKlWnikt~---------eC~~tlD~H 588 (775)
T KOG0319|consen 538 -----------------SCLKTFEGHTSAVLRASFI---RNGKQLISAGADGLIKLWNIKTN---------ECEMTLDAH 588 (775)
T ss_pred -----------------eeeeeecCccceeEeeeee---eCCcEEEeccCCCcEEEEeccch---------hhhhhhhhc
Confidence 7889999999999999999 89999999999999999999998 677888999
Q ss_pred ccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 318 NKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 318 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
++.|++++.++ ....++||+.||.|.+|.
T Consensus 589 ~DrvWaL~~~~-~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 589 NDRVWALSVSP-LLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred cceeEEEeecC-ccceeEecCCCeEEEEee
Confidence 99999999988 566899999999999995
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-36 Score=258.27 Aligned_cols=291 Identities=18% Similarity=0.213 Sum_probs=236.8
Q ss_pred eCCceeeeEEEEecCCCceEEEeC--CCCcEEEEECCC------------CcEEEEeecCCCCeEEEEEecCCCEEEEEe
Q 018858 12 RGHKATATCCIASRDRPGFVASSG--EDGCICWFDLRS------------KDVQLVTDVGNGPVTSLCFKSGNEDIIYVS 77 (349)
Q Consensus 12 ~~h~~~i~~~~~~~~~~~~l~t~~--~dg~i~vwd~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 77 (349)
..+...|.+++.+|+ +..++||+ .||.++||+.+. .+.+.....|.+.|.|+.|+|||++||+|+
T Consensus 10 ~H~~~~IfSIdv~pd-g~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGS 88 (942)
T KOG0973|consen 10 NHNEKSIFSIDVHPD-GVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGS 88 (942)
T ss_pred ccCCeeEEEEEecCC-ceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeecc
Confidence 345567999999999 89999999 899999998642 234566778999999999999999999999
Q ss_pred CCCeEEEEEccC----------C-----CcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceec
Q 018858 78 SGKEVKSFDVHM----------P-----ASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR 142 (349)
Q Consensus 78 ~dg~i~iwd~~~----------~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 142 (349)
.|+.|.||+... + +..+....+.+|...|..++|+|++.+|++++.|+.|.+||.++.+.++.++
T Consensus 89 DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~ 168 (942)
T KOG0973|consen 89 DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR 168 (942)
T ss_pred CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeee
Confidence 999999999873 0 1234566788899999999999999999999999999999999999999999
Q ss_pred cccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCC
Q 018858 143 AGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS 222 (349)
Q Consensus 143 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 222 (349)
+|.+.|..+.|.| -|++|++-+.|++|++|+..+-........
T Consensus 169 -~H~s~VKGvs~DP------------------------------------~Gky~ASqsdDrtikvwrt~dw~i~k~It~ 211 (942)
T KOG0973|consen 169 -GHQSLVKGVSWDP------------------------------------IGKYFASQSDDRTLKVWRTSDWGIEKSITK 211 (942)
T ss_pred -cccccccceEECC------------------------------------ccCeeeeecCCceEEEEEcccceeeEeecc
Confidence 9999999999999 899999999999999999776444443332
Q ss_pred -----CCCCccceeeeeccccEEEEeeeeee-------cCceeeeeeeeecCCCcceEEEEEee--ecCCcc--------
Q 018858 223 -----TTKPLKGSQSTSKVNIRDAEMEILDQ-------SGGKRLHLDYSVGGHTAAASCVAFSM--FGERGK-------- 280 (349)
Q Consensus 223 -----~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~h~~~i~~i~~~~--~~~~~~-------- 280 (349)
+.......++|||||++|++....++ ..+..+..-..+-||.+++.++.|+| +..+.+
T Consensus 212 pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~ 291 (942)
T KOG0973|consen 212 PFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPN 291 (942)
T ss_pred chhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCC
Confidence 33456778999999999997433222 12234555677889999999999997 211111
Q ss_pred ----EEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 281 ----YLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 281 ----~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.+|+|+.|+.|.||.....+ +++....-....|..++|+| ||..|++||.||+|.+..++
T Consensus 292 ~~y~i~AvgSqDrSlSVW~T~~~R--------Pl~vi~~lf~~SI~DmsWsp-dG~~LfacS~DGtV~~i~Fe 355 (942)
T KOG0973|consen 292 CYYCIAAVGSQDRSLSVWNTALPR--------PLFVIHNLFNKSIVDMSWSP-DGFSLFACSLDGTVALIHFE 355 (942)
T ss_pred cceEEEEEecCCccEEEEecCCCC--------chhhhhhhhcCceeeeeEcC-CCCeEEEEecCCeEEEEEcc
Confidence 67899999999999997763 33333444677999999988 99999999999999998753
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-37 Score=258.02 Aligned_cols=278 Identities=16% Similarity=0.219 Sum_probs=232.7
Q ss_pred eeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 018858 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVH 88 (349)
Q Consensus 9 ~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 88 (349)
..+...+..|..++|+|. ...++++-..|.|++||++-+.++..|..|.++|..++|+|....+++|+.|-.|++|+.+
T Consensus 3 tkfEskSsRvKglsFHP~-rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk 81 (1202)
T KOG0292|consen 3 TKFESKSSRVKGLSFHPK-RPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK 81 (1202)
T ss_pred chhhcccccccceecCCC-CCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecc
Confidence 345556778999999999 8899999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCC
Q 018858 89 MPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNG 168 (349)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 168 (349)
+. +++.++.+|-+.|..+.|++.-.+++++++|.+|+||+..+++++..+. +|+.-|.|.+|+|
T Consensus 82 ~r---rclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavlt-GHnHYVMcAqFhp------------ 145 (1202)
T KOG0292|consen 82 TR---RCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLT-GHNHYVMCAQFHP------------ 145 (1202)
T ss_pred cc---eehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEe-cCceEEEeeccCC------------
Confidence 64 6677788899999999999999999999999999999999999999999 9999999999999
Q ss_pred CCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeee
Q 018858 169 NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ 248 (349)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (349)
....+++++-|.+||+||+..-+.........+...+. .+ +..+.
T Consensus 146 ------------------------tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~---~~--------~~~dL 190 (1202)
T KOG0292|consen 146 ------------------------TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRG---QQ--------GNSDL 190 (1202)
T ss_pred ------------------------ccceEEEecccceEEEEeecchhccCCCCCCchhhhhc---cc--------cchhh
Confidence 78899999999999999998643322222211111110 00 00111
Q ss_pred cCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeec
Q 018858 249 SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP 328 (349)
Q Consensus 249 ~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 328 (349)
....+.-..+.+.||...|+-++|+ |.-..+++|+.|..|++|.+...+. ..+....+|.+.|.++-|+|
T Consensus 191 fg~~DaVVK~VLEGHDRGVNwaAfh---pTlpliVSG~DDRqVKlWrmnetKa-------WEvDtcrgH~nnVssvlfhp 260 (1202)
T KOG0292|consen 191 FGQTDAVVKHVLEGHDRGVNWAAFH---PTLPLIVSGADDRQVKLWRMNETKA-------WEVDTCRGHYNNVSSVLFHP 260 (1202)
T ss_pred cCCcCeeeeeeecccccccceEEec---CCcceEEecCCcceeeEEEeccccc-------eeehhhhcccCCcceEEecC
Confidence 1111234456789999999999999 8889999999999999999987643 55667889999999999999
Q ss_pred CCCCcEEEeeCCCeEEEeeCC
Q 018858 329 TESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 329 ~~~~~l~~~~~dg~i~iw~~~ 349 (349)
..+++++.|.|++|+|||+.
T Consensus 261 -~q~lIlSnsEDksirVwDm~ 280 (1202)
T KOG0292|consen 261 -HQDLILSNSEDKSIRVWDMT 280 (1202)
T ss_pred -ccceeEecCCCccEEEEecc
Confidence 55699999999999999984
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=265.42 Aligned_cols=290 Identities=16% Similarity=0.145 Sum_probs=222.7
Q ss_pred eeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC----c----EEEEeecCCCCeEEEEEec-CCCEEEEEeCCCe
Q 018858 11 LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK----D----VQLVTDVGNGPVTSLCFKS-GNEDIIYVSSGKE 81 (349)
Q Consensus 11 l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~----~----~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~ 81 (349)
+..|.+.|.+++|+|+ +++|++|+.|+.|+||+.... . ....+. +...+.+++|++ .+.+|++++.||.
T Consensus 479 ~~~~~~~V~~i~fs~d-g~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~ 556 (793)
T PLN00181 479 LLNSSNLVCAIGFDRD-GEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGV 556 (793)
T ss_pred ccCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCe
Confidence 4568999999999998 899999999999999997532 1 122333 346789999987 4788999999999
Q ss_pred EEEEEccCCCcccceeeccCcccceEEEEEcc-CCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCC
Q 018858 82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNP-KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPW 160 (349)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 160 (349)
|++||+.++ ..+..+.+|...|++++|+| ++.+|++|+.|+.|++||++++..+..+. . ...+.++.|.+.
T Consensus 557 v~lWd~~~~---~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~-~-~~~v~~v~~~~~--- 628 (793)
T PLN00181 557 VQVWDVARS---QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK-T-KANICCVQFPSE--- 628 (793)
T ss_pred EEEEECCCC---eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe-c-CCCeEEEEEeCC---
Confidence 999999875 34556677889999999997 67899999999999999999988888877 3 457889999653
Q ss_pred CCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEE
Q 018858 161 EGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRD 240 (349)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (349)
++.+|++|+.||.|++||+++..............+..+.|. ++..+
T Consensus 629 --------------------------------~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~l 675 (793)
T PLN00181 629 --------------------------------SGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTL 675 (793)
T ss_pred --------------------------------CCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEE
Confidence 689999999999999999987653222223345678888887 56666
Q ss_pred EEeeeeeecCce----------eeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecc--ccc
Q 018858 241 AEMEILDQSGGK----------RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTS--INN 308 (349)
Q Consensus 241 ~~~~~~~~~~~~----------~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~--~~~ 308 (349)
++ ++.|..+.. ...++..+.+|...++.+.|+ +++++|++|+.|+.|++|+.......... ...
T Consensus 676 vs-~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s---~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~ 751 (793)
T PLN00181 676 VS-SSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLS---VSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTI 751 (793)
T ss_pred EE-EECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEc---CCCCEEEEEeCCCEEEEEECCCCCceEEEecccC
Confidence 64 333322111 124567788999999999999 89999999999999999998765322110 000
Q ss_pred cee--eeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 309 DLL--IKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 309 ~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
..+ .....+...|.+++|+| ++..|++|+.||.|+||++
T Consensus 752 ~~~~~~~~~~~~~~V~~v~ws~-~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 752 DPVSGLEVDDASQFISSVCWRG-QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CcccccccCCCCcEEEEEEEcC-CCCeEEEecCCCcEEEEec
Confidence 000 01234566799999988 8889999999999999997
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-36 Score=235.55 Aligned_cols=260 Identities=18% Similarity=0.272 Sum_probs=220.8
Q ss_pred CCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc----------EEEEeecCCCCeEEEEEecC-CCEEEEEeCCCe
Q 018858 13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD----------VQLVTDVGNGPVTSLCFKSG-NEDIIYVSSGKE 81 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~----------~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~ 81 (349)
.|.+.|+.+.+-|++..++++.+..+.++|||..+.. +-..+.+|.+.-.+++|++. .-++++++.|+.
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 5999999999999989999999999999999986421 12377889887888999884 346899999999
Q ss_pred EEEEEccCCCc----ccceeeccCcccceEEEEEccC-CCEEEEEcCCCcEEEEEcC--CceEeceeccccccceeEEEE
Q 018858 82 VKSFDVHMPAS----WRPLESYNYNKEEINQIVCNPK-SSFLACADDGGDVKIIDIR--QHCLYKSLRAGHSSICSSVQF 154 (349)
Q Consensus 82 i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~v~~~~~ 154 (349)
|++||+..... ..+...+.+|...|..++|++. ..+|++++.|+.+.|||+| +.++....+ .|.+.+.|++|
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~-ah~~~vn~~~f 280 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVK-AHSAEVNCVAF 280 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccc-ccCCceeEEEe
Confidence 99999985332 4556678889999999999995 4788999999999999999 455556666 89999999999
Q ss_pred ccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeee
Q 018858 155 IPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTS 234 (349)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 234 (349)
+|- ++..||+|+.|++|.+||+|+-.
T Consensus 281 np~-----------------------------------~~~ilAT~S~D~tV~LwDlRnL~------------------- 306 (422)
T KOG0264|consen 281 NPF-----------------------------------NEFILATGSADKTVALWDLRNLN------------------- 306 (422)
T ss_pred CCC-----------------------------------CCceEEeccCCCcEEEeechhcc-------------------
Confidence 995 67899999999999999999732
Q ss_pred ccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCccee-----cccccc
Q 018858 235 KVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ-----TSINND 309 (349)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~-----~~~~~~ 309 (349)
.+++++.+|...|.++.|+| .....||+++.|+.+.|||+..-...+ ...+..
T Consensus 307 --------------------~~lh~~e~H~dev~~V~WSP--h~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppE 364 (422)
T KOG0264|consen 307 --------------------KPLHTFEGHEDEVFQVEWSP--HNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPE 364 (422)
T ss_pred --------------------cCceeccCCCcceEEEEeCC--CCCceeEecccCCcEEEEeccccccccChhhhccCCcc
Confidence 56788999999999999997 567799999999999999998755443 234557
Q ss_pred eeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 310 LLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 310 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
+++...+|...|..+.|+|.+...|++++.|+.+.||+++
T Consensus 365 llF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 365 LLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred eeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 7788899999999999999999899999999999999874
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=241.87 Aligned_cols=252 Identities=15% Similarity=0.205 Sum_probs=225.2
Q ss_pred ccCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeE
Q 018858 3 DAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEV 82 (349)
Q Consensus 3 ~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 82 (349)
++...++.+..-.-+|++..|-+. .+.+++|+.|..|+||++.+++.+..+..|..-|.+++.+|...+++++|.|-.|
T Consensus 43 etqtmVksfeV~~~PvRa~kfiaR-knWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~i 121 (794)
T KOG0276|consen 43 ETQTMVKSFEVSEVPVRAAKFIAR-KNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTI 121 (794)
T ss_pred ccceeeeeeeecccchhhheeeec-cceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEE
Confidence 356678888888899999999998 8999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCcccceeeccCcccceEEEEEccC-CCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCC
Q 018858 83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPK-SSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE 161 (349)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 161 (349)
++||.+.. ....+.+.+|...|.+++|+|. .+.||+++-|++|++|.+.+..+..+++ +|...|.|+.|-+-
T Consensus 122 KlW~we~~--wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~-gHekGVN~Vdyy~~---- 194 (794)
T KOG0276|consen 122 KLWDWENE--WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLE-GHEKGVNCVDYYTG---- 194 (794)
T ss_pred EEeeccCc--eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeee-ccccCcceEEeccC----
Confidence 99999863 6777889999999999999995 5899999999999999999999999999 99999999999882
Q ss_pred CCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEE
Q 018858 162 GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA 241 (349)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (349)
.+..+|++|+.|..|++||..+.
T Consensus 195 ------------------------------gdkpylIsgaDD~tiKvWDyQtk--------------------------- 217 (794)
T KOG0276|consen 195 ------------------------------GDKPYLISGADDLTIKVWDYQTK--------------------------- 217 (794)
T ss_pred ------------------------------CCcceEEecCCCceEEEeecchH---------------------------
Confidence 25679999999999999999985
Q ss_pred EeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccce
Q 018858 242 EMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKV 321 (349)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v 321 (349)
.++.++.||...|+.+.|+ |.-.++++|++||+||||+..+. ++...+.---+.+
T Consensus 218 -------------~CV~TLeGHt~Nvs~v~fh---p~lpiiisgsEDGTvriWhs~Ty---------~lE~tLn~gleRv 272 (794)
T KOG0276|consen 218 -------------SCVQTLEGHTNNVSFVFFH---PELPIIISGSEDGTVRIWNSKTY---------KLEKTLNYGLERV 272 (794)
T ss_pred -------------HHHHHhhcccccceEEEec---CCCcEEEEecCCccEEEecCcce---------ehhhhhhcCCceE
Confidence 7889999999999999999 88899999999999999999987 4555555566789
Q ss_pred EEEEeecCCCCcEEEeeCCCeEEE
Q 018858 322 NWLCTTPTESENLVVCDTSKVVKV 345 (349)
Q Consensus 322 ~~~~~~~~~~~~l~~~~~dg~i~i 345 (349)
++++..+ .+..++.|.+.|.|.+
T Consensus 273 W~I~~~k-~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 273 WCIAAHK-GDGKIAVGFDEGSVTV 295 (794)
T ss_pred EEEeecC-CCCeEEEeccCCcEEE
Confidence 9998877 4446788877777654
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=229.58 Aligned_cols=282 Identities=16% Similarity=0.151 Sum_probs=228.6
Q ss_pred CCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEee--------cCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD--------VGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
+.+.-+.|..|+|+ +++|++|+.||.|.+||..+|+....++ -+..+|.|+.|+.+..++|+|+.||.|++
T Consensus 211 g~KSh~EcA~FSPD-gqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 211 GQKSHVECARFSPD-GQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV 289 (508)
T ss_pred ccccchhheeeCCC-CceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence 34556889999999 9999999999999999999988654433 36789999999999999999999999999
Q ss_pred EEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCC
Q 018858 85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLP 164 (349)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 164 (349)
|.++++.+.+.+.. +|...|+|+.|+.|+..+++++.|.++++.-+++|+++++++ +|.+-|+...|.+
T Consensus 290 Wri~tG~ClRrFdr--AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr-GHsSyvn~a~ft~-------- 358 (508)
T KOG0275|consen 290 WRIETGQCLRRFDR--AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR-GHSSYVNEATFTD-------- 358 (508)
T ss_pred EEEecchHHHHhhh--hhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhc-CccccccceEEcC--------
Confidence 99999876655433 578999999999999999999999999999999999999999 9999999999999
Q ss_pred CCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCC-CCccceeeeecc-ccEEEE
Q 018858 165 ENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTT-KPLKGSQSTSKV-NIRDAE 242 (349)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~ 242 (349)
+|..+++++.||+|++|+.++.++..+++... ...+..+-.-|. ...+++
T Consensus 359 ----------------------------dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iV 410 (508)
T KOG0275|consen 359 ----------------------------DGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIV 410 (508)
T ss_pred ----------------------------CCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEE
Confidence 89999999999999999999998888766543 344555544443 233332
Q ss_pred ee-eeeecCc-eeeeeeeeecC---CCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecccc
Q 018858 243 ME-ILDQSGG-KRLHLDYSVGG---HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL 317 (349)
Q Consensus 243 ~~-~~~~~~~-~~~~~~~~~~~---h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 317 (349)
+. +....+. ...+.++.+.. ..+...+...+ |.|.++++.++|+.++.|.+.++ .+...+.-|
T Consensus 411 CNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lS---pkGewiYcigED~vlYCF~~~sG---------~LE~tl~Vh 478 (508)
T KOG0275|consen 411 CNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILS---PKGEWIYCIGEDGVLYCFSVLSG---------KLERTLPVH 478 (508)
T ss_pred EcCCCeEEEEeccceEEeeeccCCccCCceEEEEec---CCCcEEEEEccCcEEEEEEeecC---------ceeeeeecc
Confidence 11 1111111 12344444432 23345566678 89999999999999999999998 677777889
Q ss_pred ccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 318 NKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 318 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
...+..++.+| ..+.|++-+.||.+++|.
T Consensus 479 EkdvIGl~HHP-HqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 479 EKDVIGLTHHP-HQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cccccccccCc-ccchhhhhcccchhhhcC
Confidence 99999999999 556899999999999995
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=225.46 Aligned_cols=257 Identities=16% Similarity=0.181 Sum_probs=217.9
Q ss_pred ccCCCCeeeeCCceeeeEEEEecCC--CceEEEeCCCCcEEEEECCCCcE----EEEeecCCCCeEEEEEecCCCEEEEE
Q 018858 3 DAEAKPRRLRGHKATATCCIASRDR--PGFVASSGEDGCICWFDLRSKDV----QLVTDVGNGPVTSLCFKSGNEDIIYV 76 (349)
Q Consensus 3 ~~~~~~~~l~~h~~~i~~~~~~~~~--~~~l~t~~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~ 76 (349)
..++..+.+.||.++|.+++|...+ ...|++++.|.++++|..+.++. +....+|...|.++...+++..+++|
T Consensus 132 ~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~Sg 211 (423)
T KOG0313|consen 132 LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSG 211 (423)
T ss_pred cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEee
Confidence 4678899999999999988886542 23599999999999999887654 23345899999999999999999999
Q ss_pred eCCCeEEEEEccCC----------------------CcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCC
Q 018858 77 SSGKEVKSFDVHMP----------------------ASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ 134 (349)
Q Consensus 77 ~~dg~i~iwd~~~~----------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 134 (349)
+.|..|.||+..+. ....++..+.+|..+|.++.|++ ...+++++.|.+|+.||+.+
T Consensus 212 S~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDlet 290 (423)
T KOG0313|consen 212 SWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLET 290 (423)
T ss_pred cccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeec
Confidence 99999999993221 12235566889999999999998 67899999999999999999
Q ss_pred ceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCc
Q 018858 135 HCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE 214 (349)
Q Consensus 135 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 214 (349)
+....++. .+..+.++.++| ..++|++|+.|..|++||.+++
T Consensus 291 g~~~~~~~--~~ksl~~i~~~~------------------------------------~~~Ll~~gssdr~irl~DPR~~ 332 (423)
T KOG0313|consen 291 GGLKSTLT--TNKSLNCISYSP------------------------------------LSKLLASGSSDRHIRLWDPRTG 332 (423)
T ss_pred ccceeeee--cCcceeEeeccc------------------------------------ccceeeecCCCCceeecCCCCC
Confidence 99888877 567899999999 7899999999999999999974
Q ss_pred eeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEE
Q 018858 215 LNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 294 (349)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vw 294 (349)
. .-....++.+|...|.++.|+| .+...|++|+.|+++++|
T Consensus 333 ~-------------------------------------gs~v~~s~~gH~nwVssvkwsp--~~~~~~~S~S~D~t~klW 373 (423)
T KOG0313|consen 333 D-------------------------------------GSVVSQSLIGHKNWVSSVKWSP--TNEFQLVSGSYDNTVKLW 373 (423)
T ss_pred C-------------------------------------CceeEEeeecchhhhhheecCC--CCceEEEEEecCCeEEEE
Confidence 1 1134567889999999999996 456678999999999999
Q ss_pred ecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 295 DCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 295 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
|+++.. ..+..+.+|.+.|.++.|+ ++.++++||.|.+|+|+.
T Consensus 374 DvRS~k--------~plydI~~h~DKvl~vdW~--~~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 374 DVRSTK--------APLYDIAGHNDKVLSVDWN--EGGLIVSGGADNKLRIFK 416 (423)
T ss_pred EeccCC--------CcceeeccCCceEEEEecc--CCceEEeccCcceEEEec
Confidence 999974 4788999999999999995 556899999999999985
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-36 Score=217.98 Aligned_cols=287 Identities=14% Similarity=0.128 Sum_probs=239.2
Q ss_pred CCCCeeeeCCceeeeEEEEec--CCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeE
Q 018858 5 EAKPRRLRGHKATATCCIASR--DRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEV 82 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~--~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 82 (349)
.+...+..||+.+|..++|+| .+|-+|++++.||.-.+-+-+++..+.++.+|.+.|.+..++.+...-++++.|-+-
T Consensus 4 ~~~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadfta 83 (334)
T KOG0278|consen 4 RQTPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTA 83 (334)
T ss_pred ccCceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchh
Confidence 456778889999999999986 238899999999999998889999999999999999999999888888999999999
Q ss_pred EEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCc-eEeceeccccccceeEEEEccCCCCC
Q 018858 83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQH-CLYKSLRAGHSSICSSVQFIPWKPWE 161 (349)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~ 161 (349)
++||.-++... ..+. |+.-|..++|+.|.++|++|+.++.++|||++.. .+..++. +|.+.|..+.|..
T Consensus 84 kvw~a~tgdel---hsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~-ghtg~Ir~v~wc~----- 153 (334)
T KOG0278|consen 84 KVWDAVTGDEL---HSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEIS-GHTGGIRTVLWCH----- 153 (334)
T ss_pred hhhhhhhhhhh---hhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhc-CCCCcceeEEEec-----
Confidence 99999887544 3332 5678999999999999999999999999999854 3567778 9999999999988
Q ss_pred CCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEE
Q 018858 162 GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA 241 (349)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (349)
..+.+++.+.|++||+||.+++.....+.- +..+.++.++++|+++.
T Consensus 154 -------------------------------eD~~iLSSadd~tVRLWD~rTgt~v~sL~~--~s~VtSlEvs~dG~ilT 200 (334)
T KOG0278|consen 154 -------------------------------EDKCILSSADDKTVRLWDHRTGTEVQSLEF--NSPVTSLEVSQDGRILT 200 (334)
T ss_pred -------------------------------cCceEEeeccCCceEEEEeccCcEEEEEec--CCCCcceeeccCCCEEE
Confidence 677888889999999999999887776544 36788999999999987
Q ss_pred Eeeeeee--cCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeee-ccccc
Q 018858 242 EMEILDQ--SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIK-NINLN 318 (349)
Q Consensus 242 ~~~~~~~--~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~ 318 (349)
.+..... +......+++.+. -...|.+..++ |+..++++|++|..++.||..+++ .+.. ..+|.
T Consensus 201 ia~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~---P~k~~fVaGged~~~~kfDy~Tge---------Ei~~~nkgh~ 267 (334)
T KOG0278|consen 201 IAYGSSVKFWDAKSFGLLKSYK-MPCNVESASLH---PKKEFFVAGGEDFKVYKFDYNTGE---------EIGSYNKGHF 267 (334)
T ss_pred EecCceeEEeccccccceeecc-Ccccccccccc---CCCceEEecCcceEEEEEeccCCc---------eeeecccCCC
Confidence 5322211 2223334444443 23568888888 888999999999999999999985 3334 47899
Q ss_pred cceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 319 KKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 319 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
++|-++.|+| +|+..++|+.||+|++|.+
T Consensus 268 gpVhcVrFSP-dGE~yAsGSEDGTirlWQt 296 (334)
T KOG0278|consen 268 GPVHCVRFSP-DGELYASGSEDGTIRLWQT 296 (334)
T ss_pred CceEEEEECC-CCceeeccCCCceEEEEEe
Confidence 9999999988 9999999999999999975
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-35 Score=213.61 Aligned_cols=254 Identities=17% Similarity=0.186 Sum_probs=208.2
Q ss_pred eeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 018858 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVH 88 (349)
Q Consensus 9 ~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 88 (349)
--|+||..+++.+.++.+ |.+|++++.|.+..+|-..+|+.+.++.+|.+.|.++..+.+.+++++|+.|.++++||++
T Consensus 4 i~l~GHERplTqiKyN~e-GDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNRE-GDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred cccccCccccceEEecCC-CcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence 357899999999999998 9999999999999999998999999999999999999999999999999999999999999
Q ss_pred CCCcccceeeccCcccceEEEEEccCCCEEEEEcC-----CCcEEEEEcC-------CceEeceeccccccceeEEEEcc
Q 018858 89 MPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-----GGDVKIIDIR-------QHCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~i~d~~-------~~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
+++.+...+. ..+|..+.|++++++++...+ .+.|.++|++ ..++...+. .+.+.++.+-|.|
T Consensus 83 tGk~la~~k~----~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~-t~~skit~a~Wg~ 157 (327)
T KOG0643|consen 83 TGKQLATWKT----NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP-TPDSKITSALWGP 157 (327)
T ss_pred CCcEEEEeec----CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec-CCccceeeeeecc
Confidence 9866554443 478999999999998887654 3569999998 345566666 6778899999999
Q ss_pred CCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeecc
Q 018858 157 WKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKV 236 (349)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (349)
-++++++|..||.|..||+++++
T Consensus 158 ------------------------------------l~~~ii~Ghe~G~is~~da~~g~--------------------- 180 (327)
T KOG0643|consen 158 ------------------------------------LGETIIAGHEDGSISIYDARTGK--------------------- 180 (327)
T ss_pred ------------------------------------cCCEEEEecCCCcEEEEEcccCc---------------------
Confidence 79999999999999999999864
Q ss_pred ccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceec------------
Q 018858 237 NIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT------------ 304 (349)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~------------ 304 (349)
+.+.....|...|+.+.++ ++..++++++.|.+-++||+.+.+.+.+
T Consensus 181 ------------------~~v~s~~~h~~~Ind~q~s---~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aai 239 (327)
T KOG0643|consen 181 ------------------ELVDSDEEHSSKINDLQFS---RDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAI 239 (327)
T ss_pred ------------------eeeechhhhcccccccccc---CCcceEEecccCccceeeeccceeeEEEeeecccccceec
Confidence 3444445566677777777 6777777777777777777765443211
Q ss_pred ----------------------------------ccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 305 ----------------------------------SINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 305 ----------------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
....+.+....+|-++|++++|+| +|+..++|+.||.|++.-
T Consensus 240 sP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhP-dGksYsSGGEDG~VR~h~ 315 (327)
T KOG0643|consen 240 SPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHP-DGKSYSSGGEDGYVRLHH 315 (327)
T ss_pred ccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECC-CCcccccCCCCceEEEEE
Confidence 001123345568999999999999 999999999999999854
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=221.74 Aligned_cols=257 Identities=16% Similarity=0.249 Sum_probs=220.5
Q ss_pred ccCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeE
Q 018858 3 DAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEV 82 (349)
Q Consensus 3 ~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 82 (349)
.++++..+|.||...|..+++++. ..|+++++.|+.|+.||++..+.++.+.+|-..|.+++.+|.-+.|++|+.|.++
T Consensus 181 atg~LkltltGhi~~vr~vavS~r-HpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~ 259 (460)
T KOG0285|consen 181 ATGQLKLTLTGHIETVRGVAVSKR-HPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTI 259 (460)
T ss_pred ccCeEEEeecchhheeeeeeeccc-CceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceE
Confidence 367888999999999999999998 7899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCC
Q 018858 83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEG 162 (349)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 162 (349)
+|||+++. ..+..+.+|...|..+.+.|....+++|+.|++|++||++.++....+. .|...+.+++.+|
T Consensus 260 RvWDiRtr---~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt-~hkksvral~lhP------ 329 (460)
T KOG0285|consen 260 RVWDIRTR---ASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLT-HHKKSVRALCLHP------ 329 (460)
T ss_pred EEeeeccc---ceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeee-cccceeeEEecCC------
Confidence 99999975 4567778899999999999988899999999999999999999988888 8999999999999
Q ss_pred CCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEE
Q 018858 163 LPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE 242 (349)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (349)
....|++++.|. |+-|++..+
T Consensus 330 ------------------------------~e~~fASas~dn-ik~w~~p~g---------------------------- 350 (460)
T KOG0285|consen 330 ------------------------------KENLFASASPDN-IKQWKLPEG---------------------------- 350 (460)
T ss_pred ------------------------------chhhhhccCCcc-ceeccCCcc----------------------------
Confidence 678888888774 899999875
Q ss_pred eeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceE
Q 018858 243 MEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVN 322 (349)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 322 (349)
..+..+.+|...|++++.. .| .++++|++.|.+.+||.+++..-+..+..... -...-...|+
T Consensus 351 ------------~f~~nlsgh~~iintl~~n---sD-~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqp-GSl~sEagI~ 413 (460)
T KOG0285|consen 351 ------------EFLQNLSGHNAIINTLSVN---SD-GVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQP-GSLESEAGIF 413 (460)
T ss_pred ------------chhhccccccceeeeeeec---cC-ceEEEcCCceEEEEEecCcCcccccccccccC-Ccccccccee
Confidence 5556688999999999987 44 58899999999999999998543321100000 0112345688
Q ss_pred EEEeecCCCCcEEEeeCCCeEEEee
Q 018858 323 WLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 323 ~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
+.+|.. .+..|++|..|.+|++|.
T Consensus 414 as~fDk-tg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 414 ASCFDK-TGSRLITGEADKTIKMYK 437 (460)
T ss_pred EEeecc-cCceEEeccCCcceEEEe
Confidence 888865 677899999999999996
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=206.46 Aligned_cols=286 Identities=15% Similarity=0.148 Sum_probs=225.5
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeC--CCe
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS--GKE 81 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~ 81 (349)
+++..+.|+.-.+.|.++.|+++ |.++++++.|..+++||..+++.+.++..+.-.+..++|......++.++. |.+
T Consensus 3 s~~~ak~f~~~~~~i~sl~fs~~-G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~t 81 (311)
T KOG1446|consen 3 SFRPAKVFRETNGKINSLDFSDD-GLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDT 81 (311)
T ss_pred ccccccccccCCCceeEEEecCC-CCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCc
Confidence 45677788877889999999998 899999999999999999999999999988889999999877777777776 789
Q ss_pred EEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCC
Q 018858 82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE 161 (349)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 161 (349)
|+..++.++ +.+..+.+|...|..++.+|-+..+++++.|++|++||++..++...+. ...-..++|.|
T Consensus 82 IryLsl~dN---kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~---~~~~pi~AfDp----- 150 (311)
T KOG1446|consen 82 IRYLSLHDN---KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN---LSGRPIAAFDP----- 150 (311)
T ss_pred eEEEEeecC---ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEe---cCCCcceeECC-----
Confidence 999999875 6678899999999999999999999999999999999999777655554 22334577888
Q ss_pred CCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCc-eeee---ecCCCCCCccceeeeeccc
Q 018858 162 GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE-LNIS---RSKSTTKPLKGSQSTSKVN 237 (349)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~---~~~~~~~~~~~~~~~~~~~ 237 (349)
.|.++|++.....|++||++.- +-+. ............+.|||||
T Consensus 151 -------------------------------~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dG 199 (311)
T KOG1446|consen 151 -------------------------------EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDG 199 (311)
T ss_pred -------------------------------CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCC
Confidence 7999999998889999999974 2222 2333456778899999999
Q ss_pred cEEEEeeeee---ecCceeeeeeeeecCCCcc---eEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceeccccccee
Q 018858 238 IRDAEMEILD---QSGGKRLHLDYSVGGHTAA---ASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLL 311 (349)
Q Consensus 238 ~~~~~~~~~~---~~~~~~~~~~~~~~~h~~~---i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 311 (349)
+.++...... ......+....++..+... .-...|+ ||++++++|+.||+|.+|+++++ ..+
T Consensus 200 K~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ft---Pds~Fvl~gs~dg~i~vw~~~tg---------~~v 267 (311)
T KOG1446|consen 200 KSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFT---PDSKFVLSGSDDGTIHVWNLETG---------KKV 267 (311)
T ss_pred CEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEEC---CCCcEEEEecCCCcEEEEEcCCC---------cEe
Confidence 9998532211 1111233344455444321 2456677 99999999999999999999998 555
Q ss_pred eeccc-cccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 312 IKNIN-LNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 312 ~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
..+.+ +..++.++.|+|. +..-++.+..+.+|=
T Consensus 268 ~~~~~~~~~~~~~~~fnP~---~~mf~sa~s~l~fw~ 301 (311)
T KOG1446|consen 268 AVLRGPNGGPVSCVRFNPR---YAMFVSASSNLVFWL 301 (311)
T ss_pred eEecCCCCCCccccccCCc---eeeeeecCceEEEEe
Confidence 55555 7889999999874 566666777888883
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-34 Score=213.20 Aligned_cols=245 Identities=18% Similarity=0.278 Sum_probs=204.9
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCC--EEEEEeCCCeEE
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNE--DIIYVSSGKEVK 83 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~ 83 (349)
.++..+..|.++|++++.+ +.++++|+.|.+|+|||+.....+..+-.|.+.|+++.|.+.-. .|++|+.||.|.
T Consensus 34 ~~lF~~~aH~~sitavAVs---~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~ 110 (362)
T KOG0294|consen 34 KPLFAFSAHAGSITALAVS---GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHII 110 (362)
T ss_pred eccccccccccceeEEEec---ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEE
Confidence 3466778999999999996 68999999999999999999998999999999999999988664 899999999999
Q ss_pred EEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCC
Q 018858 84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
+|+... ...+..+.+|...|+.++++|.+++.++.+.|+.++.||+-.|+.-..++..+ ..+.+.|+|
T Consensus 111 iw~~~~---W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~--~at~v~w~~------- 178 (362)
T KOG0294|consen 111 IWRVGS---WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN--KATLVSWSP------- 178 (362)
T ss_pred EEEcCC---eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC--cceeeEEcC-------
Confidence 999874 57778888899999999999999999999999999999999887655554223 334489998
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
.|.+++++..+ .|-+|.+.+.
T Consensus 179 -----------------------------~Gd~F~v~~~~-~i~i~q~d~A----------------------------- 199 (362)
T KOG0294|consen 179 -----------------------------QGDHFVVSGRN-KIDIYQLDNA----------------------------- 199 (362)
T ss_pred -----------------------------CCCEEEEEecc-EEEEEecccH-----------------------------
Confidence 78888888765 5889998863
Q ss_pred eeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEE
Q 018858 244 EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNW 323 (349)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 323 (349)
.....+. ....+.++.|. ++.+|++|+.|+.|++||..+. .++..+.+|..+|..
T Consensus 200 -----------~v~~~i~-~~~r~l~~~~l----~~~~L~vG~d~~~i~~~D~ds~---------~~~~~~~AH~~RVK~ 254 (362)
T KOG0294|consen 200 -----------SVFREIE-NPKRILCATFL----DGSELLVGGDNEWISLKDTDSD---------TPLTEFLAHENRVKD 254 (362)
T ss_pred -----------hHhhhhh-ccccceeeeec----CCceEEEecCCceEEEeccCCC---------ccceeeecchhheee
Confidence 1212222 22456777775 7889999999999999999986 678889999999999
Q ss_pred EEe-ecCCCCcEEEeeCCCeEEEeeCC
Q 018858 324 LCT-TPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 324 ~~~-~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
+.+ ..+++.+|+++|+||.|+|||++
T Consensus 255 i~~~~~~~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 255 IASYTNPEHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred eEEEecCCceEEEEeccCceEEEEEcc
Confidence 984 33467899999999999999974
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=242.31 Aligned_cols=254 Identities=16% Similarity=0.191 Sum_probs=197.7
Q ss_pred CCeeee-CCceeeeEEEEecCCCceEEEeCCCCcEEEEECCC--------------------------------C-----
Q 018858 7 KPRRLR-GHKATATCCIASRDRPGFVASSGEDGCICWFDLRS--------------------------------K----- 48 (349)
Q Consensus 7 ~~~~l~-~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~--------------------------------~----- 48 (349)
..+.+. +|++.|+++.|+++ |+|||+||.||.|+||.+.. .
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~D-GKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~ 336 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHD-GKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT 336 (712)
T ss_pred EeeccccccCCcEEEEEeCCC-CceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence 345566 89999999999999 99999999999999998754 0
Q ss_pred -----------------------cEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccc
Q 018858 49 -----------------------DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEE 105 (349)
Q Consensus 49 -----------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 105 (349)
++++.+.+|...|..+.|+.+ ++|++++.|.+|++|++... .++..+. |.+.
T Consensus 337 s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~---~CL~~F~-Hndf 411 (712)
T KOG0283|consen 337 SSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRK---ECLKVFS-HNDF 411 (712)
T ss_pred cccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCc---ceeeEEe-cCCe
Confidence 122345679999999999965 58999999999999999864 4555554 7799
Q ss_pred eEEEEEcc-CCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeec
Q 018858 106 INQIVCNP-KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAI 184 (349)
Q Consensus 106 v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (349)
|+|++|+| |.+||++|+-||.|+||++...+++.-.. -...|++++|.|
T Consensus 412 VTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D--l~~lITAvcy~P---------------------------- 461 (712)
T KOG0283|consen 412 VTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND--LRDLITAVCYSP---------------------------- 461 (712)
T ss_pred eEEEEecccCCCcEeecccccceEEeecCcCeeEeehh--hhhhheeEEecc----------------------------
Confidence 99999999 67999999999999999999888766554 347899999999
Q ss_pred CcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCC
Q 018858 185 PDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHT 264 (349)
Q Consensus 185 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 264 (349)
+|+..++|+.+|.+++|+....+........ ....+... |.
T Consensus 462 --------dGk~avIGt~~G~C~fY~t~~lk~~~~~~I~------------------------------~~~~Kk~~-~~ 502 (712)
T KOG0283|consen 462 --------DGKGAVIGTFNGYCRFYDTEGLKLVSDFHIR------------------------------LHNKKKKQ-GK 502 (712)
T ss_pred --------CCceEEEEEeccEEEEEEccCCeEEEeeeEe------------------------------eccCcccc-Cc
Confidence 8999999999999999999875332211100 01111122 33
Q ss_pred cceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecccccc--ceEEEEeecCCCCcEEEeeCCCe
Q 018858 265 AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK--KVNWLCTTPTESENLVVCDTSKV 342 (349)
Q Consensus 265 ~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg~ 342 (349)
.|+.+.|.|..+ ..+++.+.|..|||||.+.. .++..+.++.. .-....|.. ||++|+++++|..
T Consensus 503 -rITG~Q~~p~~~--~~vLVTSnDSrIRI~d~~~~---------~lv~KfKG~~n~~SQ~~Asfs~-Dgk~IVs~seDs~ 569 (712)
T KOG0283|consen 503 -RITGLQFFPGDP--DEVLVTSNDSRIRIYDGRDK---------DLVHKFKGFRNTSSQISASFSS-DGKHIVSASEDSW 569 (712)
T ss_pred -eeeeeEecCCCC--CeEEEecCCCceEEEeccch---------hhhhhhcccccCCcceeeeEcc-CCCEEEEeecCce
Confidence 899999996333 35777778999999999776 55556665432 234446766 9999999999999
Q ss_pred EEEeeC
Q 018858 343 VKVYSI 348 (349)
Q Consensus 343 i~iw~~ 348 (349)
|++|++
T Consensus 570 VYiW~~ 575 (712)
T KOG0283|consen 570 VYIWKN 575 (712)
T ss_pred EEEEeC
Confidence 999996
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=241.82 Aligned_cols=250 Identities=16% Similarity=0.194 Sum_probs=212.9
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 85 (349)
.++.+|..|.++|+.++|+|+ +.++++||.|-.|++|++.+.+++.++.+|-.-|..+.|++.-..|+++|.|.+|+||
T Consensus 42 tli~rFdeHdGpVRgv~FH~~-qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIW 120 (1202)
T KOG0292|consen 42 TLIDRFDEHDGPVRGVDFHPT-QPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIW 120 (1202)
T ss_pred hHHhhhhccCCccceeeecCC-CCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEE
Confidence 467788999999999999999 8999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceE----------------------------
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL---------------------------- 137 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---------------------------- 137 (349)
+..+. ..+..+.+|...|.|..|+|....+++++-|.+|++||+..-+.
T Consensus 121 Nwqsr---~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaV 197 (1202)
T KOG0292|consen 121 NWQSR---KCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAV 197 (1202)
T ss_pred eccCC---ceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCee
Confidence 99975 55677788999999999999999999999999999999862111
Q ss_pred -eceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCcee
Q 018858 138 -YKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN 216 (349)
Q Consensus 138 -~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 216 (349)
...+. +|...|..++|+| .-.++++|+.|..|++|.....+
T Consensus 198 VK~VLE-GHDRGVNwaAfhp------------------------------------TlpliVSG~DDRqVKlWrmnetK- 239 (1202)
T KOG0292|consen 198 VKHVLE-GHDRGVNWAAFHP------------------------------------TLPLIVSGADDRQVKLWRMNETK- 239 (1202)
T ss_pred eeeeec-ccccccceEEecC------------------------------------CcceEEecCCcceeeEEEecccc-
Confidence 11233 6777777777777 67899999999999999998521
Q ss_pred eeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEec
Q 018858 217 ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDC 296 (349)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~ 296 (349)
...+.+..+|...|.++-|+ |....+++.|+|+.|+|||+
T Consensus 240 -------------------------------------aWEvDtcrgH~nnVssvlfh---p~q~lIlSnsEDksirVwDm 279 (1202)
T KOG0292|consen 240 -------------------------------------AWEVDTCRGHYNNVSSVLFH---PHQDLILSNSEDKSIRVWDM 279 (1202)
T ss_pred -------------------------------------ceeehhhhcccCCcceEEec---CccceeEecCCCccEEEEec
Confidence 13456778999999999999 88899999999999999999
Q ss_pred CCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 297 SRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
... ..++.+...++.-+.++.+| ..+ |++++-|+-+.||.+
T Consensus 280 ~kR---------t~v~tfrrendRFW~laahP-~lN-LfAAgHDsGm~VFkl 320 (1202)
T KOG0292|consen 280 TKR---------TSVQTFRRENDRFWILAAHP-ELN-LFAAGHDSGMIVFKL 320 (1202)
T ss_pred ccc---------cceeeeeccCCeEEEEEecC-Ccc-eeeeecCCceEEEEE
Confidence 997 56667777778889999988 554 555566666666654
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-34 Score=206.90 Aligned_cols=243 Identities=17% Similarity=0.268 Sum_probs=200.6
Q ss_pred eEEEEecCCCceEEEeC-------CCCcEEEEECCCCcEEEEeec--CCCCeEEEEEecCC-CEEEEEeCCCeEEEEEcc
Q 018858 19 TCCIASRDRPGFVASSG-------EDGCICWFDLRSKDVQLVTDV--GNGPVTSLCFKSGN-EDIIYVSSGKEVKSFDVH 88 (349)
Q Consensus 19 ~~~~~~~~~~~~l~t~~-------~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~ 88 (349)
.++.|+|--.++|+.+. ..|.+.|.++...+-+..+.. -...+..++|+++. +.+++++.||++++||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 46788884334444332 368899999865544443332 45789999999854 567888999999999965
Q ss_pred CCCcccceeeccCcccceEEEEEccC-CCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCC
Q 018858 89 MPASWRPLESYNYNKEEINQIVCNPK-SSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENN 167 (349)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 167 (349)
. ...++..++.|+.+|.++.|++. .+.+++++.|++|++|+...++.+.++. +|...|+..+|+|.
T Consensus 92 ~--~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~-gh~~~Iy~a~~sp~---------- 158 (311)
T KOG0277|consen 92 M--PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFN-GHNSCIYQAAFSPH---------- 158 (311)
T ss_pred C--CCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeec-CCccEEEEEecCCC----------
Confidence 3 34688889999999999999984 4678888999999999999899999999 99999999999995
Q ss_pred CCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeee
Q 018858 168 GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD 247 (349)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (349)
.++++++++.|+.+++||++..
T Consensus 159 -------------------------~~nlfas~Sgd~~l~lwdvr~~--------------------------------- 180 (311)
T KOG0277|consen 159 -------------------------IPNLFASASGDGTLRLWDVRSP--------------------------------- 180 (311)
T ss_pred -------------------------CCCeEEEccCCceEEEEEecCC---------------------------------
Confidence 6899999999999999999863
Q ss_pred ecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEee
Q 018858 248 QSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTT 327 (349)
Q Consensus 248 ~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 327 (349)
.....+..|...|.++.|+. .+.+.|+||+.|+.||+||+++.. .++..+.+|.-.|..+.|+
T Consensus 181 -------gk~~~i~ah~~Eil~cdw~k--y~~~vl~Tg~vd~~vr~wDir~~r--------~pl~eL~gh~~AVRkvk~S 243 (311)
T KOG0277|consen 181 -------GKFMSIEAHNSEILCCDWSK--YNHNVLATGGVDNLVRGWDIRNLR--------TPLFELNGHGLAVRKVKFS 243 (311)
T ss_pred -------CceeEEEeccceeEeecccc--cCCcEEEecCCCceEEEEehhhcc--------ccceeecCCceEEEEEecC
Confidence 11223778888999999996 567899999999999999999875 4567779999999999999
Q ss_pred cCCCCcEEEeeCCCeEEEeeCC
Q 018858 328 PTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 328 ~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
|.....|++++.|-+++|||..
T Consensus 244 ph~~~lLaSasYDmT~riw~~~ 265 (311)
T KOG0277|consen 244 PHHASLLASASYDMTVRIWDPE 265 (311)
T ss_pred cchhhHhhhccccceEEecccc
Confidence 9888899999999999999963
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=205.32 Aligned_cols=237 Identities=16% Similarity=0.211 Sum_probs=194.1
Q ss_pred CCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC--cEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 018858 13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK--DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP 90 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 90 (349)
+|+..|++++|+|. +++|++++.|.++.||.-..+ +++.++++|...|.+++|+++|++||++++|+.|.||.+...
T Consensus 59 ~hkrsVRsvAwsp~-g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ded 137 (312)
T KOG0645|consen 59 GHKRSVRSVAWSPH-GRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDED 137 (312)
T ss_pred cchheeeeeeecCC-CcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCC
Confidence 69999999999999 899999999999999987654 568899999999999999999999999999999999999987
Q ss_pred CcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcC---CceEeceeccccccceeEEEEccCCCCCCCCCCC
Q 018858 91 ASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIR---QHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENN 167 (349)
Q Consensus 91 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 167 (349)
........++.|...|..+.|+|...+|++++.|.+|++|+-. ...+.+++. +|.+.|.+++|+|
T Consensus 138 dEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~-g~~~TVW~~~F~~----------- 205 (312)
T KOG0645|consen 138 DEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLD-GHENTVWSLAFDN----------- 205 (312)
T ss_pred CcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEec-CccceEEEEEecC-----------
Confidence 7888888999999999999999999999999999999999866 457888999 9999999999999
Q ss_pred CCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeee
Q 018858 168 GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD 247 (349)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (349)
.|..|++++.|++++||.+.+. ........+..++|. ...|++.+..+
T Consensus 206 -------------------------~G~rl~s~sdD~tv~Iw~~~~~-----~~~~~sr~~Y~v~W~--~~~IaS~ggD~ 253 (312)
T KOG0645|consen 206 -------------------------IGSRLVSCSDDGTVSIWRLYTD-----LSGMHSRALYDVPWD--NGVIASGGGDD 253 (312)
T ss_pred -------------------------CCceEEEecCCcceEeeeeccC-----cchhcccceEeeeec--ccceEeccCCC
Confidence 7899999999999999997632 222233445566676 33344322221
Q ss_pred ecC---------ceeeeee-eeecCCCcceEEEEEeeecC-CccEEEEeeCCCeEEEEecC
Q 018858 248 QSG---------GKRLHLD-YSVGGHTAAASCVAFSMFGE-RGKYLISGGNDKLVKVWDCS 297 (349)
Q Consensus 248 ~~~---------~~~~~~~-~~~~~h~~~i~~i~~~~~~~-~~~~l~s~~~d~~i~vwd~~ 297 (349)
... .....++ +.-..|...|+++.|. | ..++|++|+.||.|++|.+.
T Consensus 254 ~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~---p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 254 AIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWN---PKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred EEEEEEecCCCCCchHHHHHhhhcccccccceEEEc---CCCCCceeecCCCceEEEEEec
Confidence 110 1111222 2334688899999999 5 47899999999999999875
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-35 Score=222.98 Aligned_cols=282 Identities=17% Similarity=0.184 Sum_probs=225.7
Q ss_pred CCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEE
Q 018858 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFD 86 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 86 (349)
.+..|.||.+.|.|++=+|..-..+++|+.||.|++||+....++.++++|.+.|..|++.. ..+++++.|.+|+.|.
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK 135 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence 46678999999999999998447899999999999999999999999999999999999986 6789999999999999
Q ss_pred ccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCC
Q 018858 87 VHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPEN 166 (349)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 166 (349)
++- .++.++-+ +..+..+.-+..+..++++++ .|.|||.+-..++..+. -....|.++.|+|.
T Consensus 136 ~~~----~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~sms-wG~Dti~svkfNpv--------- 198 (433)
T KOG0268|consen 136 IDG----PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMS-WGADSISSVKFNPV--------- 198 (433)
T ss_pred ccC----Ccceeeec-cccccccccccccccccccCc--eeeecccccCCccceee-cCCCceeEEecCCC---------
Confidence 874 24444332 356777777777888999887 59999998888888888 66778999999994
Q ss_pred CCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeee
Q 018858 167 NGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEIL 246 (349)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (349)
....|++++.|+.|.+||++....+.... .......++|+| ..+..++++.
T Consensus 199 --------------------------ETsILas~~sDrsIvLyD~R~~~Pl~KVi--~~mRTN~IswnP-eafnF~~a~E 249 (433)
T KOG0268|consen 199 --------------------------ETSILASCASDRSIVLYDLRQASPLKKVI--LTMRTNTICWNP-EAFNFVAANE 249 (433)
T ss_pred --------------------------cchheeeeccCCceEEEecccCCccceee--eeccccceecCc-cccceeeccc
Confidence 56788899999999999999875544332 234567899999 5555556666
Q ss_pred eecCce-----eeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccce
Q 018858 247 DQSGGK-----RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKV 321 (349)
Q Consensus 247 ~~~~~~-----~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v 321 (349)
|..+.. -..++....+|.+.|.++.|+ |.|+-+++||.|.+|+||..+.+... -+ -...--..|
T Consensus 250 D~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfs---ptG~EfvsgsyDksIRIf~~~~~~SR-------di-YhtkRMq~V 318 (433)
T KOG0268|consen 250 DHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFS---PTGQEFVSGSYDKSIRIFPVNHGHSR-------DI-YHTKRMQHV 318 (433)
T ss_pred cccceehhhhhhcccchhhcccceeEEEeccC---CCcchhccccccceEEEeecCCCcch-------hh-hhHhhhhee
Confidence 654322 235566778899999999999 89999999999999999999886321 11 111123468
Q ss_pred EEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 322 NWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 322 ~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.++.|+. |.+++++||+|+.|++|.-
T Consensus 319 ~~Vk~S~-Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 319 FCVKYSM-DSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred eEEEEec-cccEEEecCCCcceeeeec
Confidence 9999976 9999999999999999973
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=211.13 Aligned_cols=259 Identities=21% Similarity=0.361 Sum_probs=210.8
Q ss_pred CCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCC------------C------cEEEEeecCCCCeEEEEEec
Q 018858 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRS------------K------DVQLVTDVGNGPVTSLCFKS 68 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~------------~------~~~~~~~~~~~~v~~~~~~~ 68 (349)
+-..+..|+.++.+-+|+|| |.+++||+.|..|+|.|++. + -.++++..|..+|.++.|+|
T Consensus 104 Et~ylt~HK~~cR~aafs~D-G~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP 182 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPD-GSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP 182 (430)
T ss_pred ceEEEeecccceeeeeeCCC-CcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc
Confidence 45678889999999999999 99999999999999999871 1 23677888999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceec--cccc
Q 018858 69 GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR--AGHS 146 (349)
Q Consensus 69 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~ 146 (349)
....|++++.|++|++||+......+.++.++. ..+|.++.|+|.|.++++|.+-..+++||+.+.++.-.-. ..|.
T Consensus 183 re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd-~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht 261 (430)
T KOG0640|consen 183 RETILISGSRDNTVKLFDFSKTSAKRAFKVFQD-TEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHT 261 (430)
T ss_pred hhheEEeccCCCeEEEEecccHHHHHHHHHhhc-cceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccc
Confidence 999999999999999999987555555555542 4689999999999999999999999999999887654322 2688
Q ss_pred cceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCC
Q 018858 147 SICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKP 226 (349)
Q Consensus 147 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 226 (349)
+.|+++.+++ .+++.++|+.||.|++||--++
T Consensus 262 ~ai~~V~Ys~------------------------------------t~~lYvTaSkDG~IklwDGVS~------------ 293 (430)
T KOG0640|consen 262 GAITQVRYSS------------------------------------TGSLYVTASKDGAIKLWDGVSN------------ 293 (430)
T ss_pred cceeEEEecC------------------------------------CccEEEEeccCCcEEeeccccH------------
Confidence 8999999999 8999999999999999998876
Q ss_pred ccceeeeeccccEEEEeeeeeecCceeeeeeeeec-CCC-cceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceec
Q 018858 227 LKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVG-GHT-AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 304 (349)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~-~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~ 304 (349)
+++.++. .|. ..|.+..|. .+++|+++.+.|..+++|.+.++..+..
T Consensus 294 ----------------------------rCv~t~~~AH~gsevcSa~Ft---kn~kyiLsSG~DS~vkLWEi~t~R~l~~ 342 (430)
T KOG0640|consen 294 ----------------------------RCVRTIGNAHGGSEVCSAVFT---KNGKYILSSGKDSTVKLWEISTGRMLKE 342 (430)
T ss_pred ----------------------------HHHHHHHhhcCCceeeeEEEc---cCCeEEeecCCcceeeeeeecCCceEEE
Confidence 3444432 343 468888888 8999999999999999999887765432
Q ss_pred c----------------------------------------cccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEE
Q 018858 305 S----------------------------------------INNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVK 344 (349)
Q Consensus 305 ~----------------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 344 (349)
. ...+......+|++.+.++..+| .+.-+++|+.|-.++
T Consensus 343 YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP-~~p~FmTcsdD~raR 421 (430)
T KOG0640|consen 343 YTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSP-VEPAFMTCSDDFRAR 421 (430)
T ss_pred EecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCC-CCCceeeecccceee
Confidence 0 00122223468999999999988 555799999999999
Q ss_pred Eee
Q 018858 345 VYS 347 (349)
Q Consensus 345 iw~ 347 (349)
+|-
T Consensus 422 FWy 424 (430)
T KOG0640|consen 422 FWY 424 (430)
T ss_pred eee
Confidence 995
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=228.39 Aligned_cols=246 Identities=12% Similarity=0.174 Sum_probs=188.1
Q ss_pred CceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEE-------------EEeecCCCCeEEEEEec-CCCEEEEEeCC
Q 018858 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQ-------------LVTDVGNGPVTSLCFKS-GNEDIIYVSSG 79 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~-------------~~~~~~~~~v~~~~~~~-~~~~l~~~~~d 79 (349)
|-..|.....+++ +..+++++.+.....|+...+..+ ..+.+|.+.|.+++|+| ++++|++++.|
T Consensus 19 ~~~~i~~~~~~~d-~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~D 97 (493)
T PTZ00421 19 HFLNVTPSTALWD-CSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASED 97 (493)
T ss_pred ceeccccccccCC-CCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCC
Confidence 4455666666666 566777777777777775433221 24678999999999999 88899999999
Q ss_pred CeEEEEEccCCCc----ccceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEE
Q 018858 80 KEVKSFDVHMPAS----WRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQF 154 (349)
Q Consensus 80 g~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 154 (349)
+.|++||+.++.. ...+..+.+|...|.+++|+|++ ++|++++.|+.|++||+++++.+..+. .|...|.+++|
T Consensus 98 gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~-~h~~~V~sla~ 176 (493)
T PTZ00421 98 GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK-CHSDQITSLEW 176 (493)
T ss_pred CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc-CCCCceEEEEE
Confidence 9999999976421 23456678899999999999975 789999999999999999999888888 89999999999
Q ss_pred ccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeee
Q 018858 155 IPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTS 234 (349)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 234 (349)
+| ++.+|++++.|+.|++||++++
T Consensus 177 sp------------------------------------dG~lLatgs~Dg~IrIwD~rsg-------------------- 200 (493)
T PTZ00421 177 NL------------------------------------DGSLLCTTSKDKKLNIIDPRDG-------------------- 200 (493)
T ss_pred EC------------------------------------CCCEEEEecCCCEEEEEECCCC--------------------
Confidence 99 7999999999999999999975
Q ss_pred ccccEEEEeeeeeecCceeeeeeeeecCCCcc-eEEEEEeeecCCccEEEEee----CCCeEEEEecCCCcceecccccc
Q 018858 235 KVNIRDAEMEILDQSGGKRLHLDYSVGGHTAA-ASCVAFSMFGERGKYLISGG----NDKLVKVWDCSRFQGVQTSINND 309 (349)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-i~~i~~~~~~~~~~~l~s~~----~d~~i~vwd~~~~~~~~~~~~~~ 309 (349)
..+..+.+|.+. +..+.|. +++..+++++ .|+.|++||+++.. .
T Consensus 201 --------------------~~v~tl~~H~~~~~~~~~w~---~~~~~ivt~G~s~s~Dr~VklWDlr~~~--------~ 249 (493)
T PTZ00421 201 --------------------TIVSSVEAHASAKSQRCLWA---KRKDLIITLGCSKSQQRQIMLWDTRKMA--------S 249 (493)
T ss_pred --------------------cEEEEEecCCCCcceEEEEc---CCCCeEEEEecCCCCCCeEEEEeCCCCC--------C
Confidence 344556677654 3466777 6766776654 47999999998753 2
Q ss_pred eeeecccc-ccceEEEEeecCCCCcEEEee-CCCeEEEeeCC
Q 018858 310 LLIKNINL-NKKVNWLCTTPTESENLVVCD-TSKVVKVYSIS 349 (349)
Q Consensus 310 ~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~-~dg~i~iw~~~ 349 (349)
.+.....+ ...+....|++ ++++|++++ .|+.|++||+.
T Consensus 250 p~~~~~~d~~~~~~~~~~d~-d~~~L~lggkgDg~Iriwdl~ 290 (493)
T PTZ00421 250 PYSTVDLDQSSALFIPFFDE-DTNLLYIGSKGEGNIRCFELM 290 (493)
T ss_pred ceeEeccCCCCceEEEEEcC-CCCEEEEEEeCCCeEEEEEee
Confidence 22222223 33344445555 888888887 59999999974
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=234.96 Aligned_cols=246 Identities=20% Similarity=0.227 Sum_probs=208.7
Q ss_pred CCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEEC-CCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 018858 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDL-RSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 85 (349)
..+.+.+|...|.+++|+|+ ++++++++.|++|++||+ ..+..++++.+|...|++++|+|+++.+++|+.|++|+||
T Consensus 195 ~~~~l~~h~~~v~~~~fs~d-~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriW 273 (456)
T KOG0266|consen 195 LLRELSGHTRGVSDVAFSPD-GSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIW 273 (456)
T ss_pred hhccccccccceeeeEECCC-CcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEE
Confidence 67778899999999999999 899999999999999999 5557889999999999999999999999999999999999
Q ss_pred EccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCce--Eeceecccccc--ceeEEEEccCCCCC
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC--LYKSLRAGHSS--ICSSVQFIPWKPWE 161 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~--~v~~~~~~~~~~~~ 161 (349)
|++++ ..+..+.+|.+.|++++|++++++|++++.|+.|++||+.++. ++..+. .+.. +++++.|+|
T Consensus 274 d~~~~---~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~fsp----- 344 (456)
T KOG0266|consen 274 DVRTG---ECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLS-GAENSAPVTSVQFSP----- 344 (456)
T ss_pred eccCC---eEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeeccc-CCCCCCceeEEEECC-----
Confidence 99985 5566777788999999999999999999999999999999998 556666 4444 489999999
Q ss_pred CCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCC--ccceeeeeccccE
Q 018858 162 GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKP--LKGSQSTSKVNIR 239 (349)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 239 (349)
++.+++++..|+.+++||++.............. .+.....++.+++
T Consensus 345 -------------------------------~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (456)
T KOG0266|consen 345 -------------------------------NGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKL 393 (456)
T ss_pred -------------------------------CCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCe
Confidence 8999999999999999999988877766665554 3344556778888
Q ss_pred EEEeeeeeecC----ceeeeeeeeecCC-CcceEEEEEeeecCCccEEEEee--CCCeEEEEecC
Q 018858 240 DAEMEILDQSG----GKRLHLDYSVGGH-TAAASCVAFSMFGERGKYLISGG--NDKLVKVWDCS 297 (349)
Q Consensus 240 ~~~~~~~~~~~----~~~~~~~~~~~~h-~~~i~~i~~~~~~~~~~~l~s~~--~d~~i~vwd~~ 297 (349)
+. .+..+..+ ......+..+.+| ...+..+.++ +..+++++++ .|+.+++|..+
T Consensus 394 i~-sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~---~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 394 IY-SGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSH---PTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred EE-EEeCCceEEEEeCCccchhhhhcCCCCCceeccccC---CCcCeeeecCcCCCceEEEecCC
Confidence 87 44444432 2234566778889 8889999999 8889999998 78999999764
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=201.93 Aligned_cols=253 Identities=18% Similarity=0.184 Sum_probs=211.0
Q ss_pred ccCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeC----
Q 018858 3 DAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS---- 78 (349)
Q Consensus 3 ~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---- 78 (349)
..++.+.++.||++.|+|++.+.+ .+.++||+.|.++++||+++|+.+..++ ...+|..+.|+++|++++.+..
T Consensus 40 ~nGerlGty~GHtGavW~~Did~~-s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg 117 (327)
T KOG0643|consen 40 LNGERLGTYDGHTGAVWCCDIDWD-SKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMG 117 (327)
T ss_pred cCCceeeeecCCCceEEEEEecCC-cceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcC
Confidence 357889999999999999999998 8999999999999999999999999988 5678999999999998887764
Q ss_pred -CCeEEEEEccCCC----cccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceE-eceeccccccceeEE
Q 018858 79 -GKEVKSFDVHMPA----SWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL-YKSLRAGHSSICSSV 152 (349)
Q Consensus 79 -dg~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~ 152 (349)
.+.|.++|++... ...++..+..+...++.+-|.|-+++|++|.++|.|.+||+++++. +..-+ .|...|+.+
T Consensus 118 ~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~-~h~~~Ind~ 196 (327)
T KOG0643|consen 118 YTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDE-EHSSKINDL 196 (327)
T ss_pred cceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechh-hhccccccc
Confidence 3689999998532 2233445556678999999999999999999999999999999754 44555 789999999
Q ss_pred EEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceee
Q 018858 153 QFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQS 232 (349)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 232 (349)
+++| +..++++++.|.+-++||.++-+.+...... .++.+.+
T Consensus 197 q~s~------------------------------------d~T~FiT~s~Dttakl~D~~tl~v~Kty~te--~PvN~aa 238 (327)
T KOG0643|consen 197 QFSR------------------------------------DRTYFITGSKDTTAKLVDVRTLEVLKTYTTE--RPVNTAA 238 (327)
T ss_pred cccC------------------------------------CcceEEecccCccceeeeccceeeEEEeeec--cccccee
Confidence 9999 7899999999999999999987777665443 6788889
Q ss_pred eeccccEEEEeeeeeecCce-----------------eeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEe
Q 018858 233 TSKVNIRDAEMEILDQSGGK-----------------RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD 295 (349)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd 295 (349)
++|-...++..|..+..... ..+.+..+++|-++|++++|+ |+|+..++|++||.|++.-
T Consensus 239 isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfh---PdGksYsSGGEDG~VR~h~ 315 (327)
T KOG0643|consen 239 ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFH---PDGKSYSSGGEDGYVRLHH 315 (327)
T ss_pred cccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEEC---CCCcccccCCCCceEEEEE
Confidence 99988887765555443221 112335678999999999999 9999999999999999987
Q ss_pred cCCC
Q 018858 296 CSRF 299 (349)
Q Consensus 296 ~~~~ 299 (349)
....
T Consensus 316 Fd~~ 319 (327)
T KOG0643|consen 316 FDSN 319 (327)
T ss_pred eccc
Confidence 7653
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=227.44 Aligned_cols=228 Identities=15% Similarity=0.185 Sum_probs=177.9
Q ss_pred eeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC-------cEEEEeecCCCCeEEEEEecCC-CEEEEEeCCCe
Q 018858 10 RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK-------DVQLVTDVGNGPVTSLCFKSGN-EDIIYVSSGKE 81 (349)
Q Consensus 10 ~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~ 81 (349)
.+.+|.+.|++++|+|.++++|++|+.|++|++||+.++ +.+..+.+|...|.+++|+|++ ++|++++.|+.
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 578999999999999943789999999999999999764 3467788999999999999975 68999999999
Q ss_pred EEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccc-eeEEEEccCCCC
Q 018858 82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSI-CSSVQFIPWKPW 160 (349)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~ 160 (349)
|++||+++++ .+..+..|...|.+++|+|++.+|++++.|+.|++||+++++.+..+. .|.+. ...+.|.+
T Consensus 150 VrIWDl~tg~---~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~-~H~~~~~~~~~w~~---- 221 (493)
T PTZ00421 150 VNVWDVERGK---AVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE-AHASAKSQRCLWAK---- 221 (493)
T ss_pred EEEEECCCCe---EEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEe-cCCCCcceEEEEcC----
Confidence 9999999764 345566688899999999999999999999999999999999888887 77654 34667877
Q ss_pred CCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEc----CCCeEEEEEccCceeeeecCCCCCCccceeeeecc
Q 018858 161 EGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK----GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKV 236 (349)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (349)
++..+++++ .|+.|++||+++..
T Consensus 222 --------------------------------~~~~ivt~G~s~s~Dr~VklWDlr~~~--------------------- 248 (493)
T PTZ00421 222 --------------------------------RKDLIITLGCSKSQQRQIMLWDTRKMA--------------------- 248 (493)
T ss_pred --------------------------------CCCeEEEEecCCCCCCeEEEEeCCCCC---------------------
Confidence 455555543 47999999998631
Q ss_pred ccEEEEeeeeeecCceeeeeeeeecC-CCcceEEEEEeeecCCccEEEEee-CCCeEEEEecCCCcceecccccceeeec
Q 018858 237 NIRDAEMEILDQSGGKRLHLDYSVGG-HTAAASCVAFSMFGERGKYLISGG-NDKLVKVWDCSRFQGVQTSINNDLLIKN 314 (349)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~i~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 314 (349)
.+...... +...+....|+ +++++|++++ .|+.|++||+.++. +....
T Consensus 249 ------------------~p~~~~~~d~~~~~~~~~~d---~d~~~L~lggkgDg~Iriwdl~~~~---------~~~~~ 298 (493)
T PTZ00421 249 ------------------SPYSTVDLDQSSALFIPFFD---EDTNLLYIGSKGEGNIRCFELMNER---------LTFCS 298 (493)
T ss_pred ------------------CceeEeccCCCCceEEEEEc---CCCCEEEEEEeCCCeEEEEEeeCCc---------eEEEe
Confidence 11112221 23345556777 8999998887 59999999999873 32222
Q ss_pred -cccccceEEEEeec
Q 018858 315 -INLNKKVNWLCTTP 328 (349)
Q Consensus 315 -~~~~~~v~~~~~~~ 328 (349)
..+..++..+++.|
T Consensus 299 ~~~s~~~~~g~~~~p 313 (493)
T PTZ00421 299 SYSSVEPHKGLCMMP 313 (493)
T ss_pred eccCCCCCcceEecc
Confidence 22445667777766
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=197.60 Aligned_cols=246 Identities=19% Similarity=0.215 Sum_probs=205.7
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK 83 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 83 (349)
.+.++++..+|..+|..++.+.+ ...+++|+.|..+.+||+.+|+.++.+.+|...|..++|+.+...+++|+.|.+++
T Consensus 48 rg~liktYsghG~EVlD~~~s~D-nskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r 126 (307)
T KOG0316|consen 48 RGALIKTYSGHGHEVLDAALSSD-NSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVR 126 (307)
T ss_pred ccceeeeecCCCceeeecccccc-ccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeE
Confidence 45688999999999999999998 78899999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCC
Q 018858 84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
+||.++. ..++++.+....+.|.++..+ +..|++|+.||+++.||++.|+...-.- ..+|++++|++
T Consensus 127 ~wDCRS~-s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~---g~pit~vs~s~------- 193 (307)
T KOG0316|consen 127 LWDCRSR-SFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYF---GHPITSVSFSK------- 193 (307)
T ss_pred EEEcccC-CCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhc---CCcceeEEecC-------
Confidence 9999865 356777776667889888875 5689999999999999999998765543 46799999999
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
+++..+.++.|+++++.|-.++
T Consensus 194 -----------------------------d~nc~La~~l~stlrLlDk~tG----------------------------- 215 (307)
T KOG0316|consen 194 -----------------------------DGNCSLASSLDSTLRLLDKETG----------------------------- 215 (307)
T ss_pred -----------------------------CCCEEEEeeccceeeecccchh-----------------------------
Confidence 8999999999999999999886
Q ss_pred eeeeecCceeeeeeeeecCCCcceEEEE--EeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccc-
Q 018858 244 EILDQSGGKRLHLDYSVGGHTAAASCVA--FSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKK- 320 (349)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~h~~~i~~i~--~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~- 320 (349)
+++..+++|...=+.+. ++ .....+++|++||.|++||+... .++..+..+...
T Consensus 216 -----------klL~sYkGhkn~eykldc~l~---qsdthV~sgSEDG~Vy~wdLvd~---------~~~sk~~~~~~v~ 272 (307)
T KOG0316|consen 216 -----------KLLKSYKGHKNMEYKLDCCLN---QSDTHVFSGSEDGKVYFWDLVDE---------TQISKLSVVSTVI 272 (307)
T ss_pred -----------HHHHHhcccccceeeeeeeec---ccceeEEeccCCceEEEEEeccc---------eeeeeeccCCcee
Confidence 67778888876544443 44 55678999999999999999987 566666666666
Q ss_pred eEEEEeecCCCCcEEEeeCCCeEEEe
Q 018858 321 VNWLCTTPTESENLVVCDTSKVVKVY 346 (349)
Q Consensus 321 v~~~~~~~~~~~~l~~~~~dg~i~iw 346 (349)
+.+++++|...+ ++++.. +.+..|
T Consensus 273 v~dl~~hp~~~~-f~~A~~-~~~~~~ 296 (307)
T KOG0316|consen 273 VTDLSCHPTMDD-FITATG-HGDLFW 296 (307)
T ss_pred EEeeecccCccc-eeEecC-Cceece
Confidence 889999996655 444433 334444
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=223.96 Aligned_cols=241 Identities=16% Similarity=0.239 Sum_probs=209.9
Q ss_pred CCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeec-CCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 018858 13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDV-GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA 91 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 91 (349)
.+.+.|+++.|+++ |.+|++|..+|.+.|||..+.+.+..+.+ |...|-+++|. +..+.+|+.++.|..+|++..+
T Consensus 215 ~~~~~vtSv~ws~~-G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~ 291 (484)
T KOG0305|consen 215 FGEELVTSVKWSPD-GSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQ 291 (484)
T ss_pred cCCCceEEEEECCC-CCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecch
Confidence 34789999999999 89999999999999999999998999988 99999999998 6689999999999999999754
Q ss_pred cccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCc
Q 018858 92 SWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAG 171 (349)
Q Consensus 92 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 171 (349)
... ..+.+|...|..+.|++++.++|+|+.|+.+.|||....+++..+. .|...|.+++|+|.
T Consensus 292 ~~~--~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~-~H~aAVKA~awcP~-------------- 354 (484)
T KOG0305|consen 292 HVV--STLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFT-EHTAAVKALAWCPW-------------- 354 (484)
T ss_pred hhh--hhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEe-ccceeeeEeeeCCC--------------
Confidence 332 2477899999999999999999999999999999998888888888 89999999999996
Q ss_pred cccCCceeEEeecCcccccCCCCcEEEEEc--CCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeec
Q 018858 172 QCYNPAFVHAIAIPDADMLDKTNKICVVAK--GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS 249 (349)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (349)
...+||+|+ .|+.|++||..++
T Consensus 355 ---------------------q~~lLAsGGGs~D~~i~fwn~~~g----------------------------------- 378 (484)
T KOG0305|consen 355 ---------------------QSGLLATGGGSADRCIKFWNTNTG----------------------------------- 378 (484)
T ss_pred ---------------------ccCceEEcCCCcccEEEEEEcCCC-----------------------------------
Confidence 678899876 7999999999975
Q ss_pred CceeeeeeeeecCCCcceEEEEEeeecCCccEEEEe--eCCCeEEEEecCCCcceecccccceeeeccccccceEEEEee
Q 018858 250 GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISG--GNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTT 327 (349)
Q Consensus 250 ~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~--~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 327 (349)
..+..+. -...|..|.|+ +..+-|+++ ..++.|.||++.+. ..+..+.+|...|..++++
T Consensus 379 -----~~i~~vd-tgsQVcsL~Ws---k~~kEi~sthG~s~n~i~lw~~ps~---------~~~~~l~gH~~RVl~la~S 440 (484)
T KOG0305|consen 379 -----ARIDSVD-TGSQVCSLIWS---KKYKELLSTHGYSENQITLWKYPSM---------KLVAELLGHTSRVLYLALS 440 (484)
T ss_pred -----cEecccc-cCCceeeEEEc---CCCCEEEEecCCCCCcEEEEecccc---------ceeeeecCCcceeEEEEEC
Confidence 3333333 24679999999 666555543 36789999999997 7788999999999999998
Q ss_pred cCCCCcEEEeeCCCeEEEeeC
Q 018858 328 PTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 328 ~~~~~~l~~~~~dg~i~iw~~ 348 (349)
| ||..+++|+.|.++++|++
T Consensus 441 P-dg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 441 P-DGETIVTGAADETLRFWNL 460 (484)
T ss_pred C-CCCEEEEecccCcEEeccc
Confidence 8 8999999999999999986
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-31 Score=224.43 Aligned_cols=229 Identities=15% Similarity=0.144 Sum_probs=176.8
Q ss_pred eCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecC-CCEEEEEeCCCeEEEEEccCCCc-c----cceeeccCcccceE
Q 018858 34 SGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSG-NEDIIYVSSGKEVKSFDVHMPAS-W----RPLESYNYNKEEIN 107 (349)
Q Consensus 34 ~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~-~----~~~~~~~~~~~~v~ 107 (349)
|+.++.+++|+......+..+.+|..+|.+++|+|+ +++|++|+.|+.|++||+.++.. . .++..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 567889999998877778889999999999999996 78999999999999999986421 1 23345677889999
Q ss_pred EEEEccCCCE-EEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCc
Q 018858 108 QIVCNPKSSF-LACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPD 186 (349)
Q Consensus 108 ~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (349)
+++|+|++.. |++++.|+.|++||+++++....+. +...|.+++|+|
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~--~~~~V~Slswsp------------------------------ 177 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN--MPKKLSSLKWNI------------------------------ 177 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe--cCCcEEEEEECC------------------------------
Confidence 9999998865 5789999999999999988776665 557899999999
Q ss_pred ccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcc
Q 018858 187 ADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAA 266 (349)
Q Consensus 187 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 266 (349)
+|.+|++++.|+.|++||++++ ..+..+.+|.+.
T Consensus 178 ------dG~lLat~s~D~~IrIwD~Rsg----------------------------------------~~i~tl~gH~g~ 211 (568)
T PTZ00420 178 ------KGNLLSGTCVGKHMHIIDPRKQ----------------------------------------EIASSFHIHDGG 211 (568)
T ss_pred ------CCCEEEEEecCCEEEEEECCCC----------------------------------------cEEEEEecccCC
Confidence 8999999999999999999975 344566778765
Q ss_pred eEEEEEee--ecCCccEEEEeeCCC----eEEEEecCCCcceecccccceeeecc--ccccceEEEEeecCCCCcEEEee
Q 018858 267 ASCVAFSM--FGERGKYLISGGNDK----LVKVWDCSRFQGVQTSINNDLLIKNI--NLNKKVNWLCTTPTESENLVVCD 338 (349)
Q Consensus 267 i~~i~~~~--~~~~~~~l~s~~~d~----~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~ 338 (349)
+....+.. +++++.+|++++.|+ .|+|||++... ..+.... .+.+.+.. .+.+.++.++++|+
T Consensus 212 ~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~--------~pl~~~~ld~~~~~L~p-~~D~~tg~l~lsGk 282 (568)
T PTZ00420 212 KNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT--------SALVTMSIDNASAPLIP-HYDESTGLIYLIGK 282 (568)
T ss_pred ceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC--------CceEEEEecCCccceEE-eeeCCCCCEEEEEE
Confidence 44332211 116888999888764 79999999642 2332222 22222222 34465788899999
Q ss_pred CCCeEEEeeCC
Q 018858 339 TSKVVKVYSIS 349 (349)
Q Consensus 339 ~dg~i~iw~~~ 349 (349)
.|+.|++|++.
T Consensus 283 GD~tIr~~e~~ 293 (568)
T PTZ00420 283 GDGNCRYYQHS 293 (568)
T ss_pred CCCeEEEEEcc
Confidence 99999999973
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-32 Score=206.11 Aligned_cols=282 Identities=11% Similarity=0.084 Sum_probs=217.5
Q ss_pred ccCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeE
Q 018858 3 DAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEV 82 (349)
Q Consensus 3 ~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 82 (349)
.+++.+..+.+|++.|+|+.|+.+ +.+||||+.+|.|+||+..++.....+...-..+.=+.|+|.+..|+.|+.||.+
T Consensus 94 ~~ge~~~eltgHKDSVt~~~Fshd-gtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsv 172 (399)
T KOG0296|consen 94 STGEFAGELTGHKDSVTCCSFSHD-GTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSV 172 (399)
T ss_pred cCCcceeEecCCCCceEEEEEccC-ceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcE
Confidence 356788999999999999999998 8999999999999999999999888887666778889999999999999999999
Q ss_pred EEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCC-
Q 018858 83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE- 161 (349)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~- 161 (349)
.+|.+.+. ...+.+.+|..++++=.|.|+|+.++++..||+|++||+++++++..+.........++.++..+..+
T Consensus 173 Wmw~ip~~---~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~ 249 (399)
T KOG0296|consen 173 WMWQIPSQ---ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLT 249 (399)
T ss_pred EEEECCCc---ceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeE
Confidence 99999864 44566778999999999999999999999999999999999998877762223344555555432211
Q ss_pred -CCCCCC------------------CCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCC
Q 018858 162 -GLPENN------------------GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS 222 (349)
Q Consensus 162 -~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 222 (349)
+..+.. .+.........+.++.+.|.. ..=.+.|+|+-||+|.|||+...+.....
T Consensus 250 ~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~s---s~lpL~A~G~vdG~i~iyD~a~~~~R~~c-- 324 (399)
T KOG0296|consen 250 KGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSS---SKLPLAACGSVDGTIAIYDLAASTLRHIC-- 324 (399)
T ss_pred eccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccc---cccchhhcccccceEEEEecccchhheec--
Confidence 111111 111111122333444444421 14467899999999999999875544433
Q ss_pred CCCCccceeeeeccccEEEE---eeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecC
Q 018858 223 TTKPLKGSQSTSKVNIRDAE---MEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS 297 (349)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~ 297 (349)
+.+..+..+.|-+ ..++++ .|....+..+..++...+.+|...|.+++++ |+.++++|+|.|++.+||+++
T Consensus 325 ~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls---~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 325 EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALS---PQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred cCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEc---CCCcEEEEecCCCeEEEEecC
Confidence 3345588889998 555543 3444555667788999999999999999999 899999999999999999875
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-32 Score=202.48 Aligned_cols=269 Identities=14% Similarity=0.171 Sum_probs=211.5
Q ss_pred CceeeeEEEEecCCCceEEEeCCCCcEEEEECCC-CcE-EEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 018858 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRS-KDV-QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA 91 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~-~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 91 (349)
-.+.|.+++|||....+++.++.||+|++|+++. +.. -+....|.++|.+++|+.+|..+++|+.|+.+++||+.+++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q 105 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ 105 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence 4678999999996466777999999999999986 333 24455689999999999999999999999999999999863
Q ss_pred cccceeeccCcccceEEEEEccCCC--EEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCC
Q 018858 92 SWRPLESYNYNKEEINQIVCNPKSS--FLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGN 169 (349)
Q Consensus 92 ~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 169 (349)
......|..+|..+.|-+... .|++|+.|++|+.||+|...++.++. ....++++...
T Consensus 106 ----~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~--LPeRvYa~Dv~-------------- 165 (347)
T KOG0647|consen 106 ----VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ--LPERVYAADVL-------------- 165 (347)
T ss_pred ----eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee--ccceeeehhcc--------------
Confidence 234556889999999987654 89999999999999999998888887 55677777653
Q ss_pred CccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceee-eecCCCCCCccceeeeeccccEEEEeeeeee
Q 018858 170 AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI-SRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ 248 (349)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (349)
..+++++..+..|.+|+++++... .....+.+.++++++..+|..-.+ .|+.++
T Consensus 166 ------------------------~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~a-lGsiEG 220 (347)
T KOG0647|consen 166 ------------------------YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFA-LGSIEG 220 (347)
T ss_pred ------------------------CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceE-eeeecc
Confidence 367899999999999999876543 366777888999999888877665 333332
Q ss_pred cCce------eeeeeeeecCCC---------cceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeee
Q 018858 249 SGGK------RLHLDYSVGGHT---------AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIK 313 (349)
Q Consensus 249 ~~~~------~~~~~~~~~~h~---------~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 313 (349)
.... ....-.+++.|. ..|++|+|+ |....|+|+|.||++.+||-... ..+..
T Consensus 221 rv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~Fh---P~hgtlvTaGsDGtf~FWDkdar---------~kLk~ 288 (347)
T KOG0647|consen 221 RVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFH---PVHGTLVTAGSDGTFSFWDKDAR---------TKLKT 288 (347)
T ss_pred eEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEee---cccceEEEecCCceEEEecchhh---------hhhhc
Confidence 2111 112234455554 268889999 77789999999999999998876 56667
Q ss_pred ccccccceEEEEeecCCCCcEEEe-eCC
Q 018858 314 NINLNKKVNWLCTTPTESENLVVC-DTS 340 (349)
Q Consensus 314 ~~~~~~~v~~~~~~~~~~~~l~~~-~~d 340 (349)
...|..+|++.+|+. +|.+++-+ +.|
T Consensus 289 s~~~~qpItcc~fn~-~G~ifaYA~gYD 315 (347)
T KOG0647|consen 289 SETHPQPITCCSFNR-NGSIFAYALGYD 315 (347)
T ss_pred cCcCCCccceeEecC-CCCEEEEEeecc
Confidence 788999999999977 77776655 444
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-32 Score=231.39 Aligned_cols=243 Identities=19% Similarity=0.190 Sum_probs=211.3
Q ss_pred CCCCee-eeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 018858 5 EAKPRR-LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK 83 (349)
Q Consensus 5 ~~~~~~-l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 83 (349)
+..+.. |.||.+.|.++++..- +.++++|+.|.++++||..++++..++.+|...|.++... ..++++|+.|.+|+
T Consensus 238 ~~~i~~~l~GH~g~V~~l~~~~~-~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVk 314 (537)
T KOG0274|consen 238 GYLILTRLVGHFGGVWGLAFPSG-GDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVK 314 (537)
T ss_pred ceEEEeeccCCCCCceeEEEecC-CCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEE
Confidence 344555 9999999999999874 7899999999999999999999999999999999998875 45788889999999
Q ss_pred EEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCC
Q 018858 84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
+|++++++ .+..+.+|..+|.++..+ +.++++|+.|+.|++||+.++++++.+. +|...|+++.+.+
T Consensus 315 VW~v~n~~---~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~-gH~~~V~sl~~~~------- 381 (537)
T KOG0274|consen 315 VWDVTNGA---CLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLS-GHTGRVYSLIVDS------- 381 (537)
T ss_pred EEeccCcc---eEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeec-CCcceEEEEEecC-------
Confidence 99999764 445555588999999997 7899999999999999999999999999 9999999998865
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
. ..+++|+.|+.|++||+++.+
T Consensus 382 -----------------------------~-~~~~Sgs~D~~IkvWdl~~~~---------------------------- 403 (537)
T KOG0274|consen 382 -----------------------------E-NRLLSGSLDTTIKVWDLRTKR---------------------------- 403 (537)
T ss_pred -----------------------------c-ceEEeeeeccceEeecCCchh----------------------------
Confidence 3 889999999999999999731
Q ss_pred eeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccc-cccceE
Q 018858 244 EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNIN-LNKKVN 322 (349)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~-~~~~v~ 322 (349)
+++..+.+|..-+..+.+ .+++|++++.|++|++||..++ ..+....+ |...|.
T Consensus 404 -----------~c~~tl~~h~~~v~~l~~-----~~~~Lvs~~aD~~Ik~WD~~~~---------~~~~~~~~~~~~~v~ 458 (537)
T KOG0274|consen 404 -----------KCIHTLQGHTSLVSSLLL-----RDNFLVSSSADGTIKLWDAEEG---------ECLRTLEGRHVGGVS 458 (537)
T ss_pred -----------hhhhhhcCCccccccccc-----ccceeEeccccccEEEeecccC---------ceeeeeccCCcccEE
Confidence 577889999998877775 5789999999999999999998 56666666 678899
Q ss_pred EEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 323 WLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 323 ~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.+++. ...+++++.||.+++||++
T Consensus 459 ~l~~~---~~~il~s~~~~~~~l~dl~ 482 (537)
T KOG0274|consen 459 ALALG---KEEILCSSDDGSVKLWDLR 482 (537)
T ss_pred EeecC---cceEEEEecCCeeEEEecc
Confidence 88875 2379999999999999985
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-32 Score=208.79 Aligned_cols=244 Identities=17% Similarity=0.256 Sum_probs=202.5
Q ss_pred CceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCC---CEEEEEeCCCeEEEEEccCC
Q 018858 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGN---EDIIYVSSGKEVKSFDVHMP 90 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~ 90 (349)
|.+.|.++... ++.+++|+.||.+++||.. |+....+.+|.++|.+++|.-.. ..+++++.|.++++|.++.+
T Consensus 104 hdDWVSsv~~~---~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 104 HDDWVSSVKGA---SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred chhhhhhhccc---CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 88888888776 4689999999999999965 88889999999999988885433 35999999999999998865
Q ss_pred Ccc-cceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCC-------------------------ceEeceeccc
Q 018858 91 ASW-RPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ-------------------------HCLYKSLRAG 144 (349)
Q Consensus 91 ~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-------------------------~~~~~~~~~~ 144 (349)
... ..+....+|+..|.++...+++..+++|+.|.+|++|+... +.++..+. +
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~-G 258 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLE-G 258 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEec-c
Confidence 432 23344568999999999999999999999999999999321 12334455 8
Q ss_pred cccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCC
Q 018858 145 HSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTT 224 (349)
Q Consensus 145 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 224 (349)
|..+|.++.|.+ ...+.+++.|.+|+.||+.++
T Consensus 259 Ht~~Vs~V~w~d-------------------------------------~~v~yS~SwDHTIk~WDletg---------- 291 (423)
T KOG0313|consen 259 HTEPVSSVVWSD-------------------------------------ATVIYSVSWDHTIKVWDLETG---------- 291 (423)
T ss_pred cccceeeEEEcC-------------------------------------CCceEeecccceEEEEEeecc----------
Confidence 888888888876 467889999999999999985
Q ss_pred CCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceec
Q 018858 225 KPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 304 (349)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~ 304 (349)
....++.+ ...++++.++ |..++|++|+.|..+++||.+++...
T Consensus 292 ------------------------------~~~~~~~~-~ksl~~i~~~---~~~~Ll~~gssdr~irl~DPR~~~gs-- 335 (423)
T KOG0313|consen 292 ------------------------------GLKSTLTT-NKSLNCISYS---PLSKLLASGSSDRHIRLWDPRTGDGS-- 335 (423)
T ss_pred ------------------------------cceeeeec-CcceeEeecc---cccceeeecCCCCceeecCCCCCCCc--
Confidence 33334443 3568999999 88999999999999999999987432
Q ss_pred ccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 305 SINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 305 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
...+.+.+|.+-|.++.|+|.+...|++++.|+++++||++
T Consensus 336 ----~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvR 376 (423)
T KOG0313|consen 336 ----VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVR 376 (423)
T ss_pred ----eeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEec
Confidence 45678889999999999999888899999999999999985
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=217.82 Aligned_cols=282 Identities=17% Similarity=0.170 Sum_probs=227.3
Q ss_pred CCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc--EEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD--VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
....+..|.+.+..+.|-++ ...|++|+.|..|++|+....+ .+.++.+..++|+.+.|.++++++++++.|+.+++
T Consensus 167 ~~~~ld~h~gev~~v~~l~~-sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~ 245 (459)
T KOG0288|consen 167 ALFVLDAHEGEVHDVEFLRN-SDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRL 245 (459)
T ss_pred hhhhhhccccccceeEEccC-cchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceee
Confidence 45677889999999999997 7899999999999999987666 56788888899999999999999999999999999
Q ss_pred EEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCC
Q 018858 85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLP 164 (349)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 164 (349)
|++... +...++.+|.+.|+++.|......+++|+.|.+|++||+....+.+++- ....+..|..++
T Consensus 246 Wnvd~~---r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l--~~S~cnDI~~~~-------- 312 (459)
T KOG0288|consen 246 WNVDSL---RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL--PGSQCNDIVCSI-------- 312 (459)
T ss_pred eeccch---hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc--ccccccceEecc--------
Confidence 999864 5667778899999999998877679999999999999999988877765 445566666644
Q ss_pred CCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEee
Q 018858 165 ENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME 244 (349)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (349)
..+++|..|++|++||+++......... ...+.++..+++|..+++.+
T Consensus 313 ------------------------------~~~~SgH~DkkvRfwD~Rs~~~~~sv~~--gg~vtSl~ls~~g~~lLsss 360 (459)
T KOG0288|consen 313 ------------------------------SDVISGHFDKKVRFWDIRSADKTRSVPL--GGRVTSLDLSMDGLELLSSS 360 (459)
T ss_pred ------------------------------eeeeecccccceEEEeccCCceeeEeec--CcceeeEeeccCCeEEeeec
Confidence 5688999999999999998766554443 35899999999999998764
Q ss_pred eeeec---CceeeeeeeeecC----CCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccc-
Q 018858 245 ILDQS---GGKRLHLDYSVGG----HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNIN- 316 (349)
Q Consensus 245 ~~~~~---~~~~~~~~~~~~~----h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~- 316 (349)
..|.. .....+....+.+ .....+.+.|| |++.|+++||.||.|+||++.+++ +......
T Consensus 361 RDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfS---pd~~YvaAGS~dgsv~iW~v~tgK---------lE~~l~~s 428 (459)
T KOG0288|consen 361 RDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFS---PDGSYVAAGSADGSVYIWSVFTGK---------LEKVLSLS 428 (459)
T ss_pred CCCceeeeecccccEEEEeeccccccccccceeEEC---CCCceeeeccCCCcEEEEEccCce---------EEEEeccC
Confidence 33322 1122223333321 12347889999 999999999999999999999984 4433333
Q ss_pred ccc-ceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 317 LNK-KVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 317 ~~~-~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
+.. .|++++|+| .|..|++++.++.+.+|.
T Consensus 429 ~s~~aI~s~~W~~-sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 429 TSNAAITSLSWNP-SGSGLLSADKQKAVTLWT 459 (459)
T ss_pred CCCcceEEEEEcC-CCchhhcccCCcceEecC
Confidence 222 699999998 788999999999999994
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-32 Score=225.62 Aligned_cols=252 Identities=19% Similarity=0.269 Sum_probs=222.5
Q ss_pred ccCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeE
Q 018858 3 DAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEV 82 (349)
Q Consensus 3 ~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 82 (349)
.++++++++.. +.+.|..|.|. ++++++|...|.+.+||+.+...+.++++|.+.+.+++.+|+++.+++||.|.+|
T Consensus 402 ~t~kciRTi~~--~y~l~~~Fvpg-d~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktV 478 (888)
T KOG0306|consen 402 DTLKCIRTITC--GYILASKFVPG-DRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTV 478 (888)
T ss_pred cCcceeEEecc--ccEEEEEecCC-CceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEE
Confidence 35667777764 47889999997 7999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccC-----CCccccee-----eccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEE
Q 018858 83 KSFDVHM-----PASWRPLE-----SYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSV 152 (349)
Q Consensus 83 ~iwd~~~-----~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 152 (349)
++||+.- +...+.+. ++. -.+.|.|+.++||+++|+++--|.+|++|-+.+-+..-++. +|.-+|.||
T Consensus 479 kfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLY-GHkLPV~sm 556 (888)
T KOG0306|consen 479 KFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLY-GHKLPVLSM 556 (888)
T ss_pred EEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeec-ccccceeEE
Confidence 9999753 11111111 111 24679999999999999999999999999999999888888 999999999
Q ss_pred EEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceee
Q 018858 153 QFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQS 232 (349)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 232 (349)
..+| +++++++|+.|..|++|-+.=+
T Consensus 557 DIS~------------------------------------DSklivTgSADKnVKiWGLdFG------------------ 582 (888)
T KOG0306|consen 557 DISP------------------------------------DSKLIVTGSADKNVKIWGLDFG------------------ 582 (888)
T ss_pred eccC------------------------------------CcCeEEeccCCCceEEeccccc------------------
Confidence 9999 8999999999999999998854
Q ss_pred eeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceee
Q 018858 233 TSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLI 312 (349)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 312 (349)
.+-+.+.+|...|.++.|. |+...+.++|.|+.|+-||-... ..+.
T Consensus 583 ----------------------DCHKS~fAHdDSvm~V~F~---P~~~~FFt~gKD~kvKqWDg~kF---------e~iq 628 (888)
T KOG0306|consen 583 ----------------------DCHKSFFAHDDSVMSVQFL---PKTHLFFTCGKDGKVKQWDGEKF---------EEIQ 628 (888)
T ss_pred ----------------------hhhhhhhcccCceeEEEEc---ccceeEEEecCcceEEeechhhh---------hhhe
Confidence 5667888999999999999 88899999999999999999887 6777
Q ss_pred eccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 313 KNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 313 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.+.+|...|++++.+| +|.+++++|.|.+|++|..
T Consensus 629 ~L~~H~~ev~cLav~~-~G~~vvs~shD~sIRlwE~ 663 (888)
T KOG0306|consen 629 KLDGHHSEVWCLAVSP-NGSFVVSSSHDKSIRLWER 663 (888)
T ss_pred eeccchheeeeeEEcC-CCCeEEeccCCceeEeeec
Confidence 8899999999999988 8889999999999999974
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-31 Score=194.42 Aligned_cols=282 Identities=16% Similarity=0.195 Sum_probs=225.6
Q ss_pred eeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEE--EeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEE
Q 018858 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQL--VTDVGNGPVTSLCFKS-GNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 9 ~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw 85 (349)
+.+++|...|.+++|+.+ |..|++|+.|+++.+|+++..+... ...+|...|-.++|+| +.+.+++++.|..|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~-g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCD-GTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEccc-CceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 567899999999999998 8999999999999999998775543 3467888999999987 66789999999999999
Q ss_pred EccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCC
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPE 165 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 165 (349)
|++.++....+.. ...=..+.|+|++.++++++.|..|.+.|.++.+.....+ ....+..++|+.
T Consensus 93 d~r~~k~~~~i~~----~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~--~~~e~ne~~w~~--------- 157 (313)
T KOG1407|consen 93 DIRSGKCTARIET----KGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ--FKFEVNEISWNN--------- 157 (313)
T ss_pred EeccCcEEEEeec----cCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc--ccceeeeeeecC---------
Confidence 9998765444433 2333458999999999999999999999999988877665 556677888886
Q ss_pred CCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeee
Q 018858 166 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI 245 (349)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (349)
++++|+.....|.|.|.....-+.+.....+. ...-++.|+|+|+++|+ |+
T Consensus 158 ---------------------------~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~-snCicI~f~p~GryfA~-Gs 208 (313)
T KOG1407|consen 158 ---------------------------SNDLFFLTNGLGCVEILSYPSLKPVQSIKAHP-SNCICIEFDPDGRYFAT-GS 208 (313)
T ss_pred ---------------------------CCCEEEEecCCceEEEEeccccccccccccCC-cceEEEEECCCCceEee-cc
Confidence 67888777788999999988766555554443 66678899999999995 33
Q ss_pred ee----ecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccce
Q 018858 246 LD----QSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKV 321 (349)
Q Consensus 246 ~~----~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v 321 (349)
.| .+....+-+.+.+..+.-+|..+.|+ .+|++||+||+|..|-|=+++++.. + .-..+.++-
T Consensus 209 ADAlvSLWD~~ELiC~R~isRldwpVRTlSFS---~dg~~lASaSEDh~IDIA~vetGd~---------~-~eI~~~~~t 275 (313)
T KOG1407|consen 209 ADALVSLWDVDELICERCISRLDWPVRTLSFS---HDGRMLASASEDHFIDIAEVETGDR---------V-WEIPCEGPT 275 (313)
T ss_pred ccceeeccChhHhhhheeeccccCceEEEEec---cCcceeeccCccceEEeEecccCCe---------E-EEeeccCCc
Confidence 33 23444556777788888999999999 9999999999999999999999843 2 334678899
Q ss_pred EEEEeecCCCCcEEEeeCC---------CeEEEeeCC
Q 018858 322 NWLCTTPTESENLVVCDTS---------KVVKVYSIS 349 (349)
Q Consensus 322 ~~~~~~~~~~~~l~~~~~d---------g~i~iw~~~ 349 (349)
+.++|+| ...+|+-+++| |.+++|-++
T Consensus 276 ~tVAWHP-k~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 276 FTVAWHP-KRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred eeEEecC-CCceeeEEecCCCCccccccceeEEecCC
Confidence 9999999 44577777544 678887553
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=209.84 Aligned_cols=256 Identities=15% Similarity=0.184 Sum_probs=213.9
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK 83 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 83 (349)
.++.+..|+||+..|+.+.++|+ ...+++++.|-.|+||.............|.++|+.+..+|.|+||++++.|+...
T Consensus 250 s~q~l~~~~Gh~kki~~v~~~~~-~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~ 328 (506)
T KOG0289|consen 250 SNQILATLKGHTKKITSVKFHKD-LDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWA 328 (506)
T ss_pred hhhhhhhccCcceEEEEEEeccc-hhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEE
Confidence 35678899999999999999998 78999999999999999988877788889999999999999999999999999999
Q ss_pred EEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCC
Q 018858 84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
..|++++........- ...-.+++.+|+|||..|.+|..|+.|++||++++..+..|. +|.++|..++|+.
T Consensus 329 Fsd~~~g~~lt~vs~~-~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fp-ght~~vk~i~FsE------- 399 (506)
T KOG0289|consen 329 FSDISSGSQLTVVSDE-TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFP-GHTGPVKAISFSE------- 399 (506)
T ss_pred EEEccCCcEEEEEeec-cccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCC-CCCCceeEEEecc-------
Confidence 9999987543332221 233468999999999999999999999999999999999999 9999999999999
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
+|-+|++++.|+.|++||+|+.
T Consensus 400 -----------------------------NGY~Lat~add~~V~lwDLRKl----------------------------- 421 (506)
T KOG0289|consen 400 -----------------------------NGYWLATAADDGSVKLWDLRKL----------------------------- 421 (506)
T ss_pred -----------------------------CceEEEEEecCCeEEEEEehhh-----------------------------
Confidence 8999999999999999999974
Q ss_pred eeeeecCceeeeeeeeecC-CCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceE
Q 018858 244 EILDQSGGKRLHLDYSVGG-HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVN 322 (349)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~-h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 322 (349)
+.++++.- ....+.++.|. +.|.+|+.++.|=.|++++-.+.. + ..+..+..|.+..+
T Consensus 422 -----------~n~kt~~l~~~~~v~s~~fD---~SGt~L~~~g~~l~Vy~~~k~~k~--W-----~~~~~~~~~sg~st 480 (506)
T KOG0289|consen 422 -----------KNFKTIQLDEKKEVNSLSFD---QSGTYLGIAGSDLQVYICKKKTKS--W-----TEIKELADHSGLST 480 (506)
T ss_pred -----------cccceeeccccccceeEEEc---CCCCeEEeecceeEEEEEeccccc--c-----eeeehhhhcccccc
Confidence 22222221 22368999999 899999999887777776644321 1 34556667888888
Q ss_pred EEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 323 WLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 323 ~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.+.|.. .-++++++|.|..++++.+.
T Consensus 481 ~v~Fg~-~aq~l~s~smd~~l~~~a~~ 506 (506)
T KOG0289|consen 481 GVRFGE-HAQYLASTSMDAILRLYALT 506 (506)
T ss_pred eeeecc-cceEEeeccchhheEEeecC
Confidence 998866 66799999999999998763
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=212.20 Aligned_cols=277 Identities=17% Similarity=0.168 Sum_probs=225.9
Q ss_pred CceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcc
Q 018858 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASW 93 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (349)
..+.|.+++|+|....-+|+.+. -.+.+|+..+......+......|.++.|-.||+++++|...|.|+|||..+ .
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~---r 100 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS---R 100 (487)
T ss_pred ccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc---H
Confidence 34789999999975555665554 3699999988887777777788999999999999999999999999999654 3
Q ss_pred cceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCcc
Q 018858 94 RPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQ 172 (349)
Q Consensus 94 ~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 172 (349)
..+..+.+|+.++..+.|+|++ ..|++|++|+.+++||+.+......+. +|.+.|.|.+|+|.
T Consensus 101 ~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~-~htDYVR~g~~~~~--------------- 164 (487)
T KOG0310|consen 101 VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELS-GHTDYVRCGDISPA--------------- 164 (487)
T ss_pred HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEec-CCcceeEeeccccC---------------
Confidence 4567788899999999999966 567788899999999999988766788 99999999999994
Q ss_pred ccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCce
Q 018858 173 CYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGK 252 (349)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (349)
++.++++|+.||.|++||++... .....-..+.++..+.+-|.|..++++|.....+..
T Consensus 165 --------------------~~hivvtGsYDg~vrl~DtR~~~-~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWD 223 (487)
T KOG0310|consen 165 --------------------NDHIVVTGSYDGKVRLWDTRSLT-SRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWD 223 (487)
T ss_pred --------------------CCeEEEecCCCceEEEEEeccCC-ceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEE
Confidence 67799999999999999999863 333334456789999999999999987664433222
Q ss_pred ---eeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecC
Q 018858 253 ---RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPT 329 (349)
Q Consensus 253 ---~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 329 (349)
..+.+..+..|...|+|+.+. .++..|++|+-|+.|++||+.+. +. .......++|.+++.+|
T Consensus 224 l~~G~qll~~~~~H~KtVTcL~l~---s~~~rLlS~sLD~~VKVfd~t~~---------Kv-v~s~~~~~pvLsiavs~- 289 (487)
T KOG0310|consen 224 LTTGGQLLTSMFNHNKTVTCLRLA---SDSTRLLSGSLDRHVKVFDTTNY---------KV-VHSWKYPGPVLSIAVSP- 289 (487)
T ss_pred ecCCceehhhhhcccceEEEEEee---cCCceEeecccccceEEEEccce---------EE-EEeeecccceeeEEecC-
Confidence 123344455599999999999 89999999999999999998875 33 34456788999999988
Q ss_pred CCCcEEEeeCCCeEEE
Q 018858 330 ESENLVVCDTSKVVKV 345 (349)
Q Consensus 330 ~~~~l~~~~~dg~i~i 345 (349)
+++.++.|..||.+.+
T Consensus 290 dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 290 DDQTVVIGMSNGLVSI 305 (487)
T ss_pred CCceEEEecccceeee
Confidence 7789999999998754
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-31 Score=223.88 Aligned_cols=234 Identities=14% Similarity=0.071 Sum_probs=176.9
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc--------EEEEeecCCCCeEEEEEecCCCEE-EEE
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD--------VQLVTDVGNGPVTSLCFKSGNEDI-IYV 76 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~l-~~~ 76 (349)
..+..+.+|.+.|.+++|+|+++++|++|+.||+|++||+.++. .+..+.+|...|.+++|+|++..+ +++
T Consensus 65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSg 144 (568)
T PTZ00420 65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS 144 (568)
T ss_pred ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEE
Confidence 35677899999999999999767899999999999999997542 345678899999999999988765 688
Q ss_pred eCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEE---
Q 018858 77 SSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQ--- 153 (349)
Q Consensus 77 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~--- 153 (349)
+.|+.|++||+++++... .+. +...|.+++|+|+|.+|++++.|+.|++||+++++.+.++. +|.+.+....
T Consensus 145 S~DgtIrIWDl~tg~~~~---~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~-gH~g~~~s~~v~~ 219 (568)
T PTZ00420 145 GFDSFVNIWDIENEKRAF---QIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFH-IHDGGKNTKNIWI 219 (568)
T ss_pred eCCCeEEEEECCCCcEEE---EEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEe-cccCCceeEEEEe
Confidence 999999999999765332 222 34679999999999999999999999999999999988888 8877654433
Q ss_pred --EccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCC----eEEEEEccCceeeeecCCCCCCc
Q 018858 154 --FIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG----VVDVINIESELNISRSKSTTKPL 227 (349)
Q Consensus 154 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~ 227 (349)
|++ ++.++++++.|+ .|+|||++...
T Consensus 220 ~~fs~------------------------------------d~~~IlTtG~d~~~~R~VkLWDlr~~~------------ 251 (568)
T PTZ00420 220 DGLGG------------------------------------DDNYILSTGFSKNNMREMKLWDLKNTT------------ 251 (568)
T ss_pred eeEcC------------------------------------CCCEEEEEEcCCCCccEEEEEECCCCC------------
Confidence 334 677888877664 79999999521
Q ss_pred cceeeeeccccEEEEeeeeeecCceeeeeee--eecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecc
Q 018858 228 KGSQSTSKVNIRDAEMEILDQSGGKRLHLDY--SVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTS 305 (349)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 305 (349)
.++. .+..+.+.+...... +++.++++|+.|+.|++|++..+..
T Consensus 252 ---------------------------~pl~~~~ld~~~~~L~p~~D~---~tg~l~lsGkGD~tIr~~e~~~~~~---- 297 (568)
T PTZ00420 252 ---------------------------SALVTMSIDNASAPLIPHYDE---STGLIYLIGKGDGNCRYYQHSLGSI---- 297 (568)
T ss_pred ---------------------------CceEEEEecCCccceEEeeeC---CCCCEEEEEECCCeEEEEEccCCcE----
Confidence 1222 222333333333333 6788999999999999999987521
Q ss_pred cccceeeeccccccceEEEEeecCC
Q 018858 306 INNDLLIKNINLNKKVNWLCTTPTE 330 (349)
Q Consensus 306 ~~~~~~~~~~~~~~~v~~~~~~~~~ 330 (349)
..+..+ .+..+..+++|.|..
T Consensus 298 ---~~l~~~-~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 298 ---RKVNEY-KSCSPFRSFGFLPKQ 318 (568)
T ss_pred ---Eeeccc-ccCCCccceEEcccc
Confidence 122222 255677788888743
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=199.77 Aligned_cols=249 Identities=14% Similarity=0.152 Sum_probs=200.7
Q ss_pred EEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEE
Q 018858 51 QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKII 130 (349)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 130 (349)
+..+.+|.+.|..+.|+|+|.+||+|+.|..|.+|++... .+..-.+.+|.++|..+.|.++++.+++++.|++|+.|
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gd--ceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGD--CENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccc--ccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 4556789999999999999999999999999999997632 23445566899999999999999999999999999999
Q ss_pred EcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEE
Q 018858 131 DIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVIN 210 (349)
Q Consensus 131 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d 210 (349)
|++++++.+.++ +|..-+..+.-..- ...++.+++.||++++||
T Consensus 118 D~~tG~~~rk~k-~h~~~vNs~~p~rr-----------------------------------g~~lv~SgsdD~t~kl~D 161 (338)
T KOG0265|consen 118 DAETGKRIRKHK-GHTSFVNSLDPSRR-----------------------------------GPQLVCSGSDDGTLKLWD 161 (338)
T ss_pred ecccceeeehhc-cccceeeecCcccc-----------------------------------CCeEEEecCCCceEEEEe
Confidence 999999999999 99988888873221 345677889999999999
Q ss_pred ccCceeeeecCCCCCCccceeeeeccccEEEEeeee---eecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeC
Q 018858 211 IESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEIL---DQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN 287 (349)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~ 287 (349)
+++...+.++.. +.++.++.|..++..+.+.+.. ..+........+.+.||..+|+.+..+ ++|.++.+-+.
T Consensus 162 ~R~k~~~~t~~~--kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls---~~gs~llsnsM 236 (338)
T KOG0265|consen 162 IRKKEAIKTFEN--KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLS---RYGSFLLSNSM 236 (338)
T ss_pred ecccchhhcccc--ceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEec---cCCCccccccc
Confidence 997665554432 3567889999998888854433 334444557778999999999999999 89999999999
Q ss_pred CCeEEEEecCCCcceecccccceeeecccc--ccc--eEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 288 DKLVKVWDCSRFQGVQTSINNDLLIKNINL--NKK--VNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 288 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~--v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
|.++++||++..-..+ +.+..+.+| .-. ....+|+| ++..+.+++.|..+++||.
T Consensus 237 d~tvrvwd~rp~~p~~-----R~v~if~g~~hnfeknlL~cswsp-~~~~i~ags~dr~vyvwd~ 295 (338)
T KOG0265|consen 237 DNTVRVWDVRPFAPSQ-----RCVKIFQGHIHNFEKNLLKCSWSP-NGTKITAGSADRFVYVWDT 295 (338)
T ss_pred cceEEEEEecccCCCC-----ceEEEeecchhhhhhhcceeeccC-CCCccccccccceEEEeec
Confidence 9999999998653221 445555553 333 34567877 7888999999999999984
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-31 Score=219.96 Aligned_cols=243 Identities=19% Similarity=0.233 Sum_probs=208.0
Q ss_pred eeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 018858 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVH 88 (349)
Q Consensus 9 ~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 88 (349)
-.+.||...|.+++++.+ ...+++|+ .+.|++|+..+.++++++... .+.+..|-|.++++++|...|.+.+||+.
T Consensus 367 i~~~GHR~dVRsl~vS~d-~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdla 442 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSD-SILLASGA-GESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLA 442 (888)
T ss_pred eeeccchhheeEEEeecC-ceeeeecC-CCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEee
Confidence 345699999999999987 56666655 578999999999999998754 78899999999999999999999999998
Q ss_pred CCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCC-----ceEeceec------cccccceeEEEEccC
Q 018858 89 MPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ-----HCLYKSLR------AGHSSICSSVQFIPW 157 (349)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~------~~~~~~v~~~~~~~~ 157 (349)
+. ..+...++|.+.++.++.+||+..+++|+.|.+|++||..- +...+.++ ......|.|++++|
T Consensus 443 S~---~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp- 518 (888)
T KOG0306|consen 443 SA---SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP- 518 (888)
T ss_pred hh---hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC-
Confidence 65 44455668999999999999999999999999999999751 11111111 01345677777777
Q ss_pred CCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccc
Q 018858 158 KPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVN 237 (349)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (349)
++++|+++--|.++++|-+.+-
T Consensus 519 -----------------------------------dgk~LaVsLLdnTVkVyflDtl----------------------- 540 (888)
T KOG0306|consen 519 -----------------------------------DGKLLAVSLLDNTVKVYFLDTL----------------------- 540 (888)
T ss_pred -----------------------------------CCcEEEEEeccCeEEEEEecce-----------------------
Confidence 8999999999999999999973
Q ss_pred cEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecccc
Q 018858 238 IRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL 317 (349)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 317 (349)
+..-.+.||.-+|.|+.++ ||++.++|||.|.+|+||-++-+ .+-..+.+|
T Consensus 541 -----------------KFflsLYGHkLPV~smDIS---~DSklivTgSADKnVKiWGLdFG---------DCHKS~fAH 591 (888)
T KOG0306|consen 541 -----------------KFFLSLYGHKLPVLSMDIS---PDSKLIVTGSADKNVKIWGLDFG---------DCHKSFFAH 591 (888)
T ss_pred -----------------eeeeeecccccceeEEecc---CCcCeEEeccCCCceEEeccccc---------hhhhhhhcc
Confidence 6667889999999999999 99999999999999999999998 666788999
Q ss_pred ccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 318 NKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 318 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
.+.|.++.|.| +...+.+||.|+.|+-||
T Consensus 592 dDSvm~V~F~P-~~~~FFt~gKD~kvKqWD 620 (888)
T KOG0306|consen 592 DDSVMSVQFLP-KTHLFFTCGKDGKVKQWD 620 (888)
T ss_pred cCceeEEEEcc-cceeEEEecCcceEEeec
Confidence 99999999999 777899999999999997
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-32 Score=204.10 Aligned_cols=254 Identities=17% Similarity=0.240 Sum_probs=216.6
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
..+++.|.||++.|+.++.... ..++.+++.|.+.+||.++++.++..+.+|.+.|.++.|++.+.++++++.|++-+|
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~t-qpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADST-QPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred EeehhhhcccccceeeehhhcC-CcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence 4577889999999999998876 679999999999999999999999999999999999999999999999999999999
Q ss_pred EEc------cCC-------------------------------CcccceeeccCcccceEEEEEccCCCEEEEEcCCCcE
Q 018858 85 FDV------HMP-------------------------------ASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDV 127 (349)
Q Consensus 85 wd~------~~~-------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 127 (349)
|.. ..+ ....++..+.+|...|.+..|-..++.+++++.|.+-
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTA 296 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTA 296 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccc
Confidence 972 110 0112344566788888888998889999999999999
Q ss_pred EEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEE
Q 018858 128 KIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVD 207 (349)
Q Consensus 128 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 207 (349)
.+||+++++++..+. +|....+.++-+| ..+++++.+.|-+.+
T Consensus 297 nlwDVEtge~v~~Lt-GHd~ELtHcstHp------------------------------------tQrLVvTsSrDtTFR 339 (481)
T KOG0300|consen 297 NLWDVETGEVVNILT-GHDSELTHCSTHP------------------------------------TQRLVVTSSRDTTFR 339 (481)
T ss_pred eeeeeccCceecccc-CcchhccccccCC------------------------------------cceEEEEeccCceeE
Confidence 999999999999999 9999999999999 789999999999999
Q ss_pred EEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeC
Q 018858 208 VINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN 287 (349)
Q Consensus 208 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~ 287 (349)
+||++.. ...+..+++|...|++..|. .+..+++|+.
T Consensus 340 LWDFRea---------------------------------------I~sV~VFQGHtdtVTS~vF~----~dd~vVSgSD 376 (481)
T KOG0300|consen 340 LWDFREA---------------------------------------IQSVAVFQGHTDTVTSVVFN----TDDRVVSGSD 376 (481)
T ss_pred eccchhh---------------------------------------cceeeeecccccceeEEEEe----cCCceeecCC
Confidence 9999952 25567899999999999998 4568899999
Q ss_pred CCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 288 DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 288 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
|.+|+|||+++.. ..+ .......+++.++.+- .+..++.--++..|++|||+
T Consensus 377 DrTvKvWdLrNMR--------spl-ATIRtdS~~NRvavs~-g~~iIAiPhDNRqvRlfDln 428 (481)
T KOG0300|consen 377 DRTVKVWDLRNMR--------SPL-ATIRTDSPANRVAVSK-GHPIIAIPHDNRQVRLFDLN 428 (481)
T ss_pred CceEEEeeecccc--------Ccc-eeeecCCccceeEeec-CCceEEeccCCceEEEEecC
Confidence 9999999999874 233 2334567888888865 55567777788999999984
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-31 Score=209.27 Aligned_cols=255 Identities=19% Similarity=0.236 Sum_probs=211.6
Q ss_pred CeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEE----EE---e-----------ecCCCCeEEEEEecC
Q 018858 8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQ----LV---T-----------DVGNGPVTSLCFKSG 69 (349)
Q Consensus 8 ~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~----~~---~-----------~~~~~~v~~~~~~~~ 69 (349)
.+.+..|.-+|.|++++|+ .++.++++.+|+|.-|++.+++.. .. + +.|...+.+++.+++
T Consensus 135 ~~~~~~H~~s~~~vals~d-~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D 213 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPD-DKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD 213 (479)
T ss_pred ceeeccccCcceEEEeecc-ccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC
Confidence 5777889999999999998 799999999999999999877632 11 0 267788999999999
Q ss_pred CCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccce
Q 018858 70 NEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSIC 149 (349)
Q Consensus 70 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v 149 (349)
|++|++|+.|..|.||+.++. ..++.+.+|.+.|.+++|-.....+++++.|..|++|++.....+.++. +|.+.|
T Consensus 214 gkylatgg~d~~v~Iw~~~t~---ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetly-GHqd~v 289 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTL---EHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLY-GHQDGV 289 (479)
T ss_pred CcEEEecCCCceEEEecCccc---chhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHh-CCccce
Confidence 999999999999999999975 4556678899999999999888899999999999999999998899998 999999
Q ss_pred eEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccc
Q 018858 150 SSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKG 229 (349)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 229 (349)
.++.... .++.+.+|+.|+++++|++..
T Consensus 290 ~~IdaL~------------------------------------reR~vtVGgrDrT~rlwKi~e---------------- 317 (479)
T KOG0299|consen 290 LGIDALS------------------------------------RERCVTVGGRDRTVRLWKIPE---------------- 317 (479)
T ss_pred eeechhc------------------------------------ccceEEeccccceeEEEeccc----------------
Confidence 9998776 678888888999999999975
Q ss_pred eeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccc
Q 018858 230 SQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINND 309 (349)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~ 309 (349)
.....+.+|.+.+-|++|- +...+++|+.||.|.+|++...+.+.......
T Consensus 318 -------------------------esqlifrg~~~sidcv~~I----n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AH 368 (479)
T KOG0299|consen 318 -------------------------ESQLIFRGGEGSIDCVAFI----NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAH 368 (479)
T ss_pred -------------------------cceeeeeCCCCCeeeEEEe----cccceeeccCCceEEEeeecccCceeEeeccc
Confidence 3344677888899999997 67899999999999999999876443321111
Q ss_pred eee---eccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 310 LLI---KNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 310 ~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.+. ....++..|++++..| ..+++++|+.+|.|++|.++
T Consensus 369 gv~~~~~~~~~~~Witsla~i~-~sdL~asGS~~G~vrLW~i~ 410 (479)
T KOG0299|consen 369 GVIPELDPVNGNFWITSLAVIP-GSDLLASGSWSGCVRLWKIE 410 (479)
T ss_pred cccCCccccccccceeeeEecc-cCceEEecCCCCceEEEEec
Confidence 110 1112334789999988 77799999999999999863
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-32 Score=215.61 Aligned_cols=239 Identities=15% Similarity=0.183 Sum_probs=200.4
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCC-CEEEEEeCCCeE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGN-EDIIYVSSGKEV 82 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i 82 (349)
.+++++++.+|..+|..++|+++ +..+++++.|+.|++||.++|+++..+. ....+.++.|.|++ +.+++|+.|+.|
T Consensus 247 ~~~~lrtf~gH~k~Vrd~~~s~~-g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki 324 (503)
T KOG0282|consen 247 DRRCLRTFKGHRKPVRDASFNNC-GTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKI 324 (503)
T ss_pred Ccceehhhhcchhhhhhhhcccc-CCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcE
Confidence 46889999999999999999998 8999999999999999999999988887 45678999999988 778899999999
Q ss_pred EEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCC
Q 018858 83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEG 162 (349)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 162 (349)
+-||+++++ .++.+..|-+.|..+.|-++++++++.++|++++||+.+.+..++.....+.....++..+|++.|..
T Consensus 325 ~~wDiRs~k---vvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~ 401 (503)
T KOG0282|consen 325 RQWDIRSGK---VVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFA 401 (503)
T ss_pred EEEeccchH---HHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeeh
Confidence 999999874 55666667889999999999999999999999999999988776655423445677899999999884
Q ss_pred CC--CCC------CCCc---------cccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCC
Q 018858 163 LP--ENN------GNAG---------QCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK 225 (349)
Q Consensus 163 ~~--~~~------~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 225 (349)
.. ++. .+.. .....+....+.|+| +|.+|++|+.||.+.+||.++.
T Consensus 402 aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp------DG~~l~SGdsdG~v~~wdwkt~----------- 464 (503)
T KOG0282|consen 402 AQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP------DGRTLCSGDSDGKVNFWDWKTT----------- 464 (503)
T ss_pred hhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcC------CCCeEEeecCCccEEEeechhh-----------
Confidence 32 222 0000 011235567788888 9999999999999999999974
Q ss_pred CccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEe
Q 018858 226 PLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD 295 (349)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd 295 (349)
+++..+++|...+..+.|+| .....+||++.||.|++||
T Consensus 465 -----------------------------kl~~~lkah~~~ci~v~wHP--~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 465 -----------------------------KLVSKLKAHDQPCIGVDWHP--VEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred -----------------------------hhhhccccCCcceEEEEecC--CCcceeEecccCceeEecC
Confidence 67778899999999999997 4556899999999999996
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-30 Score=196.00 Aligned_cols=265 Identities=14% Similarity=0.169 Sum_probs=208.1
Q ss_pred CceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcc
Q 018858 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASW 93 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (349)
-++.|..+.|+|. ++.|+.++.||.+++||.....+...++ |..++.+++|.+ ...+++|+-||.|+.+|+.+++.
T Consensus 12 P~d~IS~v~f~~~-~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~- 87 (323)
T KOG1036|consen 12 PEDGISSVKFSPS-SSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE- 87 (323)
T ss_pred ChhceeeEEEcCc-CCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCcc-
Confidence 3678999999988 6777778899999999999887666666 899999999987 55699999999999999997643
Q ss_pred cceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccc
Q 018858 94 RPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQC 173 (349)
Q Consensus 94 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 173 (349)
..+..|..++.|+..++....+++|+.|+.|++||.+.......+. ....|.++..
T Consensus 88 ---~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d--~~kkVy~~~v------------------- 143 (323)
T KOG1036|consen 88 ---DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD--QGKKVYCMDV------------------- 143 (323)
T ss_pred ---eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc--cCceEEEEec-------------------
Confidence 3344578999999999988999999999999999999866666655 4457888876
Q ss_pred cCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeee-ecCCCCCCccceeeeeccccEEEEeeeeeecCce
Q 018858 174 YNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS-RSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGK 252 (349)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (349)
.++.|++|+.+..+.+||+++..... ......+-+++++++-|++.-.++ ++.++.+..
T Consensus 144 -------------------~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~-sSieGRVav 203 (323)
T KOG1036|consen 144 -------------------SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVV-SSIEGRVAV 203 (323)
T ss_pred -------------------cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEE-EeecceEEE
Confidence 46789999999999999999865544 334455678899999996655552 333332111
Q ss_pred --------eeeeeeeecCCC---------cceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecc
Q 018858 253 --------RLHLDYSVGGHT---------AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI 315 (349)
Q Consensus 253 --------~~~~~~~~~~h~---------~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 315 (349)
.......++.|. .+|++|+|+ |-...|+||+.||.|.+||+.+. +.+..+.
T Consensus 204 E~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fh---p~~~tfaTgGsDG~V~~Wd~~~r---------Krl~q~~ 271 (323)
T KOG1036|consen 204 EYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFH---PIHGTFATGGSDGIVNIWDLFNR---------KRLKQLA 271 (323)
T ss_pred EccCCchHHhhhceeEEeeecccCCceEEEEeceeEec---cccceEEecCCCceEEEccCcch---------hhhhhcc
Confidence 112233455553 389999999 67789999999999999999997 5666666
Q ss_pred ccccceEEEEeecCCCCcEEEeeC
Q 018858 316 NLNKKVNWLCTTPTESENLVVCDT 339 (349)
Q Consensus 316 ~~~~~v~~~~~~~~~~~~l~~~~~ 339 (349)
.....|.+++|+. +|..||+++.
T Consensus 272 ~~~~SI~slsfs~-dG~~LAia~s 294 (323)
T KOG1036|consen 272 KYETSISSLSFSM-DGSLLAIASS 294 (323)
T ss_pred CCCCceEEEEecc-CCCeEEEEec
Confidence 7778899999976 8889998863
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-31 Score=193.70 Aligned_cols=267 Identities=16% Similarity=0.162 Sum_probs=207.3
Q ss_pred eeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC---cEEEEeecCCCCeEEEEEec--CCCEEEEEeCCCeEEEE
Q 018858 11 LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK---DVQLVTDVGNGPVTSLCFKS--GNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 11 l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iw 85 (349)
-..|.+.|..+...-. |+.|+|++.|++|+|+..+.. +++.++.+|.+||..++|.. .|..||+++.||.|.||
T Consensus 7 dt~H~D~IHda~lDyy-gkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYY-GKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhHhhhhhh-cceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 3478999998888777 899999999999999998754 45789999999999999965 79999999999999999
Q ss_pred EccCCCcccceeeccCcccceEEEEEccC--CCEEEEEcCCCcEEEEEcCCc--eE-eceeccccccceeEEEEccCCCC
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPK--SSFLACADDGGDVKIIDIRQH--CL-YKSLRAGHSSICSSVQFIPWKPW 160 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~--~~-~~~~~~~~~~~v~~~~~~~~~~~ 160 (349)
.-+.+ .......+..|...|++++|.|. |-.|++++.||.|.|.+.+.. -. .+... .|.-.|++++|.|-..
T Consensus 86 ke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~-aH~~GvnsVswapa~~- 162 (299)
T KOG1332|consen 86 KEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVF-AHEIGVNSVSWAPASA- 162 (299)
T ss_pred ecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhh-ccccccceeeecCcCC-
Confidence 98876 55666677789999999999885 478899999999999998843 22 22334 7889999999999300
Q ss_pred CCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEE
Q 018858 161 EGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRD 240 (349)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (349)
.+..... .+ ...-+.|++|+.|..|+||+..++
T Consensus 163 ---------~g~~~~~--------~~----~~~~krlvSgGcDn~VkiW~~~~~-------------------------- 195 (299)
T KOG1332|consen 163 ---------PGSLVDQ--------GP----AAKVKRLVSGGCDNLVKIWKFDSD-------------------------- 195 (299)
T ss_pred ---------Ccccccc--------Cc----ccccceeeccCCccceeeeecCCc--------------------------
Confidence 0000000 00 002367999999999999999863
Q ss_pred EEeeeeeecCceeeeeeeeecCCCcceEEEEEeeec-CCccEEEEeeCCCeEEEEecCCCcceecccccceeeecccccc
Q 018858 241 AEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFG-ERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK 319 (349)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~-~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 319 (349)
.......+.+|...|+.++|.|.. -...+|+++++||++.||-....... .....+.....
T Consensus 196 ------------~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~------wk~tll~~f~~ 257 (299)
T KOG1332|consen 196 ------------SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP------WKKTLLEEFPD 257 (299)
T ss_pred ------------chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc------ccccccccCCc
Confidence 224445689999999999999511 11358999999999999988743221 22334445778
Q ss_pred ceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 320 KVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 320 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
.+..+.|+. .|++|+.++.|+.|.+|.
T Consensus 258 ~~w~vSWS~-sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 258 VVWRVSWSL-SGNILAVSGGDNKVTLWK 284 (299)
T ss_pred ceEEEEEec-cccEEEEecCCcEEEEEE
Confidence 899999987 888999999999999996
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=219.94 Aligned_cols=246 Identities=15% Similarity=0.188 Sum_probs=204.7
Q ss_pred Cceeee---EEEEecCCCceEEEeCCCCcEEEEECCCCc------EEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 14 HKATAT---CCIASRDRPGFVASSGEDGCICWFDLRSKD------VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 14 h~~~i~---~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
|...|. .+..+..++++|+|||.||.|++|+..... .+..++.|..-|..++...+++.|+++|.|-+|++
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~ 99 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV 99 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence 444455 555566667899999999999999986422 36778889999999999999999999999999999
Q ss_pred EEccCCCcccceeeccCcccceEEEEE-ccCCCEEEEEcCCCcEEEEEcCCce--Eeceec--------cccccceeEEE
Q 018858 85 FDVHMPASWRPLESYNYNKEEINQIVC-NPKSSFLACADDGGDVKIIDIRQHC--LYKSLR--------AGHSSICSSVQ 153 (349)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~--------~~~~~~v~~~~ 153 (349)
|+...+. ...+.++..|.+.|.|++. .++..++|+|+-|+.|.+||+.++. .+.++. .++..+|++++
T Consensus 100 W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA 178 (735)
T KOG0308|consen 100 WNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLA 178 (735)
T ss_pred eecccCc-chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeee
Confidence 9998653 3556677789999999999 7788899999999999999999762 222221 14455666666
Q ss_pred EccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeee
Q 018858 154 FIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQST 233 (349)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 233 (349)
.++ .+..++.|+..+.|++||.++.
T Consensus 179 ~N~------------------------------------t~t~ivsGgtek~lr~wDprt~------------------- 203 (735)
T KOG0308|consen 179 MNQ------------------------------------TGTIIVSGGTEKDLRLWDPRTC------------------- 203 (735)
T ss_pred cCC------------------------------------cceEEEecCcccceEEeccccc-------------------
Confidence 666 7889999999999999999985
Q ss_pred eccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeee
Q 018858 234 SKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIK 313 (349)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 313 (349)
..+..+++|...|..+..+ +||..++++|.||+|++||+... +.+..
T Consensus 204 ---------------------~kimkLrGHTdNVr~ll~~---dDGt~~ls~sSDgtIrlWdLgqQ---------rCl~T 250 (735)
T KOG0308|consen 204 ---------------------KKIMKLRGHTDNVRVLLVN---DDGTRLLSASSDGTIRLWDLGQQ---------RCLAT 250 (735)
T ss_pred ---------------------cceeeeeccccceEEEEEc---CCCCeEeecCCCceEEeeecccc---------ceeee
Confidence 4556778999999999999 99999999999999999999987 78888
Q ss_pred ccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 314 NINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 314 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
+..|...|+++..+| +-..+++|+.||.|+.=||+
T Consensus 251 ~~vH~e~VWaL~~~~-sf~~vYsG~rd~~i~~Tdl~ 285 (735)
T KOG0308|consen 251 YIVHKEGVWALQSSP-SFTHVYSGGRDGNIYRTDLR 285 (735)
T ss_pred EEeccCceEEEeeCC-CcceEEecCCCCcEEecccC
Confidence 999999999999987 66789999999999876653
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=199.60 Aligned_cols=242 Identities=17% Similarity=0.197 Sum_probs=206.4
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK 83 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 83 (349)
++.-+.+|.||++.|+....+.+ ....++++.|-+-++||.-++..+.++. |..-|.+++|+.+.++|++|+.+..++
T Consensus 48 tgdwigtfeghkgavw~~~l~~n-a~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllr 125 (334)
T KOG0278|consen 48 TGDWIGTFEGHKGAVWSATLNKN-ATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLR 125 (334)
T ss_pred CCCcEEeeeccCcceeeeecCch-hhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhh
Confidence 56778899999999999988876 7788899999999999999999998888 888999999999999999999999999
Q ss_pred EEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCC
Q 018858 84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
|||++..+ .+...+.+|.+.|..+.|....+.|++++.|+.|++||.++++.++++. .+.+|+++.++++|.++..
T Consensus 126 vfdln~p~--App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~--~~s~VtSlEvs~dG~ilTi 201 (334)
T KOG0278|consen 126 VFDLNRPK--APPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE--FNSPVTSLEVSQDGRILTI 201 (334)
T ss_pred hhhccCCC--CCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe--cCCCCcceeeccCCCEEEE
Confidence 99998643 4556678899999999999989999999999999999999999999987 7788999999999887743
Q ss_pred CCCC----------CCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeee
Q 018858 164 PENN----------GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQST 233 (349)
Q Consensus 164 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 233 (349)
.... ........+..+.+..+.| +...+++|+.|..++.||..++.
T Consensus 202 a~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P------~k~~fVaGged~~~~kfDy~Tge------------------ 257 (334)
T KOG0278|consen 202 AYGSSVKFWDAKSFGLLKSYKMPCNVESASLHP------KKEFFVAGGEDFKVYKFDYNTGE------------------ 257 (334)
T ss_pred ecCceeEEeccccccceeeccCccccccccccC------CCceEEecCcceEEEEEeccCCc------------------
Confidence 3222 1222223345677777777 77899999999999999999852
Q ss_pred eccccEEEEeeeeeecCceeeeeeee-ecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCc
Q 018858 234 SKVNIRDAEMEILDQSGGKRLHLDYS-VGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ 300 (349)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 300 (349)
.+.. .++|.++|.|+.|+ |+|...++||+||+|++|.+..++
T Consensus 258 ----------------------Ei~~~nkgh~gpVhcVrFS---PdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 258 ----------------------EIGSYNKGHFGPVHCVRFS---PDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred ----------------------eeeecccCCCCceEEEEEC---CCCceeeccCCCceEEEEEecCCC
Confidence 2223 47899999999999 999999999999999999987653
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-29 Score=205.56 Aligned_cols=245 Identities=23% Similarity=0.325 Sum_probs=204.5
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
++....+..|...+.++.|+|+ ++++++++.+|.|++||+.+++.+..+..|...+.++.|+++++++++++.++.|.+
T Consensus 41 ~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~ 119 (289)
T cd00200 41 GELLRTLKGHTGPVRDVAASAD-GTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKV 119 (289)
T ss_pred CCcEEEEecCCcceeEEEECCC-CCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEE
Confidence 3456778899999999999998 789999999999999999988888888889999999999999888888888999999
Q ss_pred EEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCC
Q 018858 85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLP 164 (349)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 164 (349)
||+++++ ....+..|...+.+++|+|++.++++++.++.|++||+++++.+..+. .+...+.++.|+|
T Consensus 120 ~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~-------- 187 (289)
T cd00200 120 WDVETGK---CLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLT-GHTGEVNSVAFSP-------- 187 (289)
T ss_pred EECCCcE---EEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEe-cCccccceEEECC--------
Confidence 9998653 334444677889999999999999998889999999999888888888 7888999999999
Q ss_pred CCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEee
Q 018858 165 ENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME 244 (349)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (349)
+++.+++++.++.|++||++..+...... .....+..+.|++++.++++..
T Consensus 188 ----------------------------~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~ 238 (289)
T cd00200 188 ----------------------------DGEKLLSSSSDGTIKLWDLSTGKCLGTLR-GHENGVNSVAFSPDGYLLASGS 238 (289)
T ss_pred ----------------------------CcCEEEEecCCCcEEEEECCCCceecchh-hcCCceEEEEEcCCCcEEEEEc
Confidence 78888999999999999999766555443 2344788999999977777533
Q ss_pred eeeec----CceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEe
Q 018858 245 ILDQS----GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD 295 (349)
Q Consensus 245 ~~~~~----~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd 295 (349)
.++. ..........+..|...|.++.|+ +++++|++++.|+.|++|+
T Consensus 239 -~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 239 -EDGTIRVWDLRTGECVQTLSGHTNSVTSLAWS---PDGKRLASGSADGTIRIWD 289 (289)
T ss_pred -CCCcEEEEEcCCceeEEEccccCCcEEEEEEC---CCCCEEEEecCCCeEEecC
Confidence 2222 122235556677888899999999 8999999999999999996
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.6e-30 Score=219.39 Aligned_cols=234 Identities=21% Similarity=0.292 Sum_probs=205.3
Q ss_pred CceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEE-eecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCc
Q 018858 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLV-TDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPAS 92 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 92 (349)
|...+.|..|. ..++++++.+++|++||..++..+.. +.+|.+.|.++++..-+..+++|+.|.++++||..++++
T Consensus 207 ~~~~~~~~q~~---~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C 283 (537)
T KOG0274|consen 207 DDHVVLCLQLH---DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC 283 (537)
T ss_pred Ccchhhhheee---cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE
Confidence 56678888888 35899999999999999999998877 999999999999988788999999999999999998754
Q ss_pred ccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCcc
Q 018858 93 WRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQ 172 (349)
Q Consensus 93 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 172 (349)
...+.+|...+.++... ...+++|+.|.+|++|++.++..+..+. +|..+|.++..+
T Consensus 284 ---~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~-~h~~~V~~v~~~----------------- 340 (537)
T KOG0274|consen 284 ---THSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLR-GHTGPVNCVQLD----------------- 340 (537)
T ss_pred ---EEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEec-cccccEEEEEec-----------------
Confidence 45566788999988875 4578889999999999999999999999 899999999984
Q ss_pred ccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCce
Q 018858 173 CYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGK 252 (349)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (349)
+.++++|+.||+|++||+...
T Consensus 341 ---------------------~~~lvsgs~d~~v~VW~~~~~-------------------------------------- 361 (537)
T KOG0274|consen 341 ---------------------EPLLVSGSYDGTVKVWDPRTG-------------------------------------- 361 (537)
T ss_pred ---------------------CCEEEEEecCceEEEEEhhhc--------------------------------------
Confidence 579999999999999999975
Q ss_pred eeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCC
Q 018858 253 RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESE 332 (349)
Q Consensus 253 ~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 332 (349)
++++.+.+|...|+++.+. .. ..+++|+.|+.|++||+.+.. +.+..+.+|..-+..+.+ .++
T Consensus 362 --~cl~sl~gH~~~V~sl~~~---~~-~~~~Sgs~D~~IkvWdl~~~~--------~c~~tl~~h~~~v~~l~~---~~~ 424 (537)
T KOG0274|consen 362 --KCLKSLSGHTGRVYSLIVD---SE-NRLLSGSLDTTIKVWDLRTKR--------KCIHTLQGHTSLVSSLLL---RDN 424 (537)
T ss_pred --eeeeeecCCcceEEEEEec---Cc-ceEEeeeeccceEeecCCchh--------hhhhhhcCCccccccccc---ccc
Confidence 7889999999999999876 33 899999999999999999963 366678889888888776 445
Q ss_pred cEEEeeCCCeEEEeeCC
Q 018858 333 NLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 333 ~l~~~~~dg~i~iw~~~ 349 (349)
+|++++.|++|++||..
T Consensus 425 ~Lvs~~aD~~Ik~WD~~ 441 (537)
T KOG0274|consen 425 FLVSSSADGTIKLWDAE 441 (537)
T ss_pred eeEeccccccEEEeecc
Confidence 89999999999999863
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.8e-28 Score=176.85 Aligned_cols=286 Identities=12% Similarity=0.117 Sum_probs=220.5
Q ss_pred CceeeeEEEEecCCCceEEEeCCCCcEEEEECCC------C-----c----EEEEeecCCCCeEEEEEecCCCEEEEEeC
Q 018858 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRS------K-----D----VQLVTDVGNGPVTSLCFKSGNEDIIYVSS 78 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~------~-----~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 78 (349)
.+..|.+++|+|. |.+.+.|+...+++|-.+.. + + ..+.-+.|.+.|.|.+|+|+|++|++|+.
T Consensus 31 dsqairav~fhp~-g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsn 109 (350)
T KOG0641|consen 31 DSQAIRAVAFHPA-GGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSN 109 (350)
T ss_pred chhheeeEEecCC-CceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCC
Confidence 4567999999998 88999999999998875432 1 1 12334568999999999999999999999
Q ss_pred CCeEEEEEccCCC--cccceeeccCcccceEEEEEccC----CCEEEEEc-CCCcEEEEEcCCceEeceeccccccceeE
Q 018858 79 GKEVKSFDVHMPA--SWRPLESYNYNKEEINQIVCNPK----SSFLACAD-DGGDVKIIDIRQHCLYKSLRAGHSSICSS 151 (349)
Q Consensus 79 dg~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~v~~ 151 (349)
|++|++..+.... ....-..+..|.+.|..++|-.+ +..|++++ .|..|++-|...++..+.+. +|.+.|.+
T Consensus 110 dk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s-ghtghila 188 (350)
T KOG0641|consen 110 DKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS-GHTGHILA 188 (350)
T ss_pred CceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec-CCcccEEE
Confidence 9999998765422 12222345668899999999653 35666655 46678888988999999999 99998887
Q ss_pred EE-EccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCC------C
Q 018858 152 VQ-FIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKST------T 224 (349)
Q Consensus 152 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~ 224 (349)
+- | ++-++++|+.|.+|++||++-+.++...... .
T Consensus 189 lysw--------------------------------------n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~gle 230 (350)
T KOG0641|consen 189 LYSW--------------------------------------NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLE 230 (350)
T ss_pred EEEe--------------------------------------cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcc
Confidence 64 3 5789999999999999999987776654322 2
Q ss_pred CCccceeeeeccccEEEEeeeee----ecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCc
Q 018858 225 KPLKGSQSTSKVNIRDAEMEILD----QSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ 300 (349)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 300 (349)
.+.+..++..|.|+.+++ |..| ....+....+..+..|...|.++.|+ |...|+++++.|..|++=|++..-
T Consensus 231 ssavaav~vdpsgrll~s-g~~dssc~lydirg~r~iq~f~phsadir~vrfs---p~a~yllt~syd~~ikltdlqgdl 306 (350)
T KOG0641|consen 231 SSAVAAVAVDPSGRLLAS-GHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFS---PGAHYLLTCSYDMKIKLTDLQGDL 306 (350)
T ss_pred cceeEEEEECCCcceeee-ccCCCceEEEEeeCCceeeeeCCCccceeEEEeC---CCceEEEEecccceEEEeecccch
Confidence 356788999999999995 3222 22333456778888999999999999 888999999999999999998642
Q ss_pred ceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 301 GVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
..+ -.+.....|++.+..+.|+|.+ -.+++.+.|.++.+|.++
T Consensus 307 a~e-----l~~~vv~ehkdk~i~~rwh~~d-~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 307 AHE-----LPIMVVAEHKDKAIQCRWHPQD-FSFISSSADKTATLWALN 349 (350)
T ss_pred hhc-----CceEEEEeccCceEEEEecCcc-ceeeeccCcceEEEeccC
Confidence 111 2233455799999999999954 468888999999999864
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.5e-30 Score=200.35 Aligned_cols=240 Identities=20% Similarity=0.299 Sum_probs=205.5
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccc
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRP 95 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 95 (349)
..|.++...|. ...+.||+.|..+.++|....+.+..+++|...|+.+.++|+...+++++.|..|+||.......
T Consensus 220 pgi~ald~~~s-~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~--- 295 (506)
T KOG0289|consen 220 PGITALDIIPS-SSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE--- 295 (506)
T ss_pred CCeeEEeecCC-CCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC---
Confidence 46888888887 68999999999999999999999999999999999999999999999999999999999876432
Q ss_pred eeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceecc-ccccceeEEEEccCCCCCCCCCCCCCCcccc
Q 018858 96 LESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA-GHSSICSSVQFIPWKPWEGLPENNGNAGQCY 174 (349)
Q Consensus 96 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (349)
......|+.+|+.+..+|.|.||++++.||...+.|++++..+..... ...-.+++.+|+|
T Consensus 296 ~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp------------------ 357 (506)
T KOG0289|consen 296 PTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP------------------ 357 (506)
T ss_pred ccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC------------------
Confidence 233456889999999999999999999999999999999988877661 1234588999999
Q ss_pred CCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceee
Q 018858 175 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRL 254 (349)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (349)
||.+|.+|..||.|++||+.++
T Consensus 358 ------------------DgLifgtgt~d~~vkiwdlks~---------------------------------------- 379 (506)
T KOG0289|consen 358 ------------------DGLIFGTGTPDGVVKIWDLKSQ---------------------------------------- 379 (506)
T ss_pred ------------------CceEEeccCCCceEEEEEcCCc----------------------------------------
Confidence 8999999999999999999974
Q ss_pred eeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcE
Q 018858 255 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENL 334 (349)
Q Consensus 255 ~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 334 (349)
.....+.+|.++|..|.|+ .+|.||+++++|+.|++||++..+. ..........++.++.|.. .|.+|
T Consensus 380 ~~~a~Fpght~~vk~i~Fs---ENGY~Lat~add~~V~lwDLRKl~n--------~kt~~l~~~~~v~s~~fD~-SGt~L 447 (506)
T KOG0289|consen 380 TNVAKFPGHTGPVKAISFS---ENGYWLATAADDGSVKLWDLRKLKN--------FKTIQLDEKKEVNSLSFDQ-SGTYL 447 (506)
T ss_pred cccccCCCCCCceeEEEec---cCceEEEEEecCCeEEEEEehhhcc--------cceeeccccccceeEEEcC-CCCeE
Confidence 4556788999999999999 9999999999999999999998642 1112222334799999977 88899
Q ss_pred EEeeCCCeEEEee
Q 018858 335 VVCDTSKVVKVYS 347 (349)
Q Consensus 335 ~~~~~dg~i~iw~ 347 (349)
+.++.|=.|++++
T Consensus 448 ~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 448 GIAGSDLQVYICK 460 (506)
T ss_pred EeecceeEEEEEe
Confidence 9999888887765
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-29 Score=230.74 Aligned_cols=264 Identities=18% Similarity=0.187 Sum_probs=203.5
Q ss_pred CCcEEEEECCCCcEEEE-----eecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCC----cc-cceeeccCcccce
Q 018858 37 DGCICWFDLRSKDVQLV-----TDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA----SW-RPLESYNYNKEEI 106 (349)
Q Consensus 37 dg~i~vwd~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~-~~~~~~~~~~~~v 106 (349)
+|.+++|+....+.... +..|...|.+++|+|+++++++|+.|+.|+||++.... .. .+...+. +...+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 67788898876554433 33488999999999999999999999999999986421 10 1112222 24678
Q ss_pred EEEEEccC-CCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecC
Q 018858 107 NQIVCNPK-SSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIP 185 (349)
Q Consensus 107 ~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (349)
.+++|++. +.+|++++.||.|++||+.+++.+..+. +|...|++++|+|.
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~-~H~~~V~~l~~~p~---------------------------- 586 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMK-EHEKRVWSIDYSSA---------------------------- 586 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEec-CCCCCEEEEEEcCC----------------------------
Confidence 99999874 6899999999999999999999989998 89999999999973
Q ss_pred cccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeee-ccccEEEEeeeeeecCce----ee-eeeee
Q 018858 186 DADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTS-KVNIRDAEMEILDQSGGK----RL-HLDYS 259 (349)
Q Consensus 186 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~-~~~~~ 259 (349)
++.+|++|+.||.|++||++++........ ...+.++.|+ +++..+++ +..++.+.. .. .....
T Consensus 587 -------~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~--~~~v~~v~~~~~~g~~lat-gs~dg~I~iwD~~~~~~~~~~ 656 (793)
T PLN00181 587 -------DPTLLASGSDDGSVKLWSINQGVSIGTIKT--KANICCVQFPSESGRSLAF-GSADHKVYYYDLRNPKLPLCT 656 (793)
T ss_pred -------CCCEEEEEcCCCEEEEEECCCCcEEEEEec--CCCeEEEEEeCCCCCEEEE-EeCCCeEEEEECCCCCccceE
Confidence 678999999999999999998766655443 2457788885 46777774 444433211 11 23456
Q ss_pred ecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeC
Q 018858 260 VGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDT 339 (349)
Q Consensus 260 ~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 339 (349)
+.+|...|.++.|. ++.+|++++.|+.|++||+...... .....+..+.+|...++.++|++ ++.+|++|+.
T Consensus 657 ~~~h~~~V~~v~f~----~~~~lvs~s~D~~ikiWd~~~~~~~---~~~~~l~~~~gh~~~i~~v~~s~-~~~~lasgs~ 728 (793)
T PLN00181 657 MIGHSKTVSYVRFV----DSSTLVSSSTDNTLKLWDLSMSISG---INETPLHSFMGHTNVKNFVGLSV-SDGYIATGSE 728 (793)
T ss_pred ecCCCCCEEEEEEe----CCCEEEEEECCCEEEEEeCCCCccc---cCCcceEEEcCCCCCeeEEEEcC-CCCEEEEEeC
Confidence 67899999999996 5789999999999999999753210 00135567788999999999988 6789999999
Q ss_pred CCeEEEeeC
Q 018858 340 SKVVKVYSI 348 (349)
Q Consensus 340 dg~i~iw~~ 348 (349)
|+.|++|+.
T Consensus 729 D~~v~iw~~ 737 (793)
T PLN00181 729 TNEVFVYHK 737 (793)
T ss_pred CCEEEEEEC
Confidence 999999985
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-30 Score=202.12 Aligned_cols=240 Identities=19% Similarity=0.196 Sum_probs=198.7
Q ss_pred ceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccC-----
Q 018858 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM----- 89 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~----- 89 (349)
.++|.|++-+|. |.+|+.|+..|.|++|.+.+|.++..+.+|-..|+++.|+.|+.+|++|+.||.|.+|.+-.
T Consensus 81 Pg~v~al~s~n~-G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~ 159 (476)
T KOG0646|consen 81 PGPVHALASSNL-GYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD 159 (476)
T ss_pred ccceeeeecCCC-ceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc
Confidence 578999999998 89999998999999999999999999999999999999999999999999999999998743
Q ss_pred -CCcccceeeccCcccceEEEEEccCC--CEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCC
Q 018858 90 -PASWRPLESYNYNKEEINQIVCNPKS--SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPEN 166 (349)
Q Consensus 90 -~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 166 (349)
....+++..+..|.-+|+++...+.+ .++++++.|.++++||+..+..+.++. .+..+.+++.+|
T Consensus 160 ~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~--fp~si~av~lDp---------- 227 (476)
T KOG0646|consen 160 NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT--FPSSIKAVALDP---------- 227 (476)
T ss_pred cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe--cCCcceeEEEcc----------
Confidence 12456778888999999999987753 789999999999999999999988887 778899999999
Q ss_pred CCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeee
Q 018858 167 NGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEIL 246 (349)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (349)
.++.+.+|+.+|.|.+.++.+..... ..+..-.+++
T Consensus 228 --------------------------ae~~~yiGt~~G~I~~~~~~~~~~~~-------~~v~~k~~~~----------- 263 (476)
T KOG0646|consen 228 --------------------------AERVVYIGTEEGKIFQNLLFKLSGQS-------AGVNQKGRHE----------- 263 (476)
T ss_pred --------------------------cccEEEecCCcceEEeeehhcCCccc-------cccccccccc-----------
Confidence 78999999999999999887531000 0000001111
Q ss_pred eecCceeeeeeeeecCCCc--ceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEE
Q 018858 247 DQSGGKRLHLDYSVGGHTA--AASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWL 324 (349)
Q Consensus 247 ~~~~~~~~~~~~~~~~h~~--~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 324 (349)
....+..+.+|.+ .|+|++++ -||..|++|+.||.|.|||+.+. .+++......++|+.+
T Consensus 264 ------~~t~~~~~~Gh~~~~~ITcLais---~DgtlLlSGd~dg~VcvWdi~S~---------Q~iRtl~~~kgpVtnL 325 (476)
T KOG0646|consen 264 ------ENTQINVLVGHENESAITCLAIS---TDGTLLLSGDEDGKVCVWDIYSK---------QCIRTLQTSKGPVTNL 325 (476)
T ss_pred ------ccceeeeeccccCCcceeEEEEe---cCccEEEeeCCCCCEEEEecchH---------HHHHHHhhhcccccee
Confidence 1244566788887 99999999 89999999999999999999997 5555555577888888
Q ss_pred EeecC
Q 018858 325 CTTPT 329 (349)
Q Consensus 325 ~~~~~ 329 (349)
.+.|-
T Consensus 326 ~i~~~ 330 (476)
T KOG0646|consen 326 QINPL 330 (476)
T ss_pred Eeecc
Confidence 88663
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-29 Score=208.21 Aligned_cols=236 Identities=14% Similarity=0.221 Sum_probs=202.8
Q ss_pred eeeeCCceeeeE-EEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEc
Q 018858 9 RRLRGHKATATC-CIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDV 87 (349)
Q Consensus 9 ~~l~~h~~~i~~-~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 87 (349)
+.+.+|.+-|.+ +++.+.++-.+++|+.|.+|.+|......++.++.+|...|.++....++. +++||.|.++++|..
T Consensus 51 ~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~ 129 (745)
T KOG0301|consen 51 HAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI 129 (745)
T ss_pred eecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc
Confidence 457788888888 888865466799999999999999999999999999999999999887777 999999999999987
Q ss_pred cCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCC
Q 018858 88 HMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENN 167 (349)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 167 (349)
. +....+++|...|++++.-|++ .+++|+.|+.|++|.- ++.+++|. +|.+-|+.+++.+
T Consensus 130 ~-----~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~-gHtD~VRgL~vl~----------- 189 (745)
T KOG0301|consen 130 G-----ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFS-GHTDCVRGLAVLD----------- 189 (745)
T ss_pred h-----hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhc-cchhheeeeEEec-----------
Confidence 6 3344588899999999999877 8999999999999974 78899999 9999999999987
Q ss_pred CCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeee
Q 018858 168 GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD 247 (349)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (349)
+..|++++.||.|++|++..
T Consensus 190 --------------------------~~~flScsNDg~Ir~w~~~g---------------------------------- 209 (745)
T KOG0301|consen 190 --------------------------DSHFLSCSNDGSIRLWDLDG---------------------------------- 209 (745)
T ss_pred --------------------------CCCeEeecCCceEEEEeccC----------------------------------
Confidence 45688999999999999965
Q ss_pred ecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEee
Q 018858 248 QSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTT 327 (349)
Q Consensus 248 ~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 327 (349)
+.+..+.+|...|+++... .++..++++++|++++||+... +.+.+.-....|+++.+.
T Consensus 210 -------e~l~~~~ghtn~vYsis~~---~~~~~Ivs~gEDrtlriW~~~e-----------~~q~I~lPttsiWsa~~L 268 (745)
T KOG0301|consen 210 -------EVLLEMHGHTNFVYSISMA---LSDGLIVSTGEDRTLRIWKKDE-----------CVQVITLPTTSIWSAKVL 268 (745)
T ss_pred -------ceeeeeeccceEEEEEEec---CCCCeEEEecCCceEEEeecCc-----------eEEEEecCccceEEEEEe
Confidence 6778899999999999977 7889999999999999999773 222333334488888887
Q ss_pred cCCCCcEEEeeCCCeEEEeeC
Q 018858 328 PTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 328 ~~~~~~l~~~~~dg~i~iw~~ 348 (349)
+ +| -+++|++||.||||..
T Consensus 269 ~-Ng-DIvvg~SDG~VrVfT~ 287 (745)
T KOG0301|consen 269 L-NG-DIVVGGSDGRVRVFTV 287 (745)
T ss_pred e-CC-CEEEeccCceEEEEEe
Confidence 7 55 4999999999999975
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-30 Score=204.08 Aligned_cols=284 Identities=15% Similarity=0.185 Sum_probs=223.9
Q ss_pred CeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC---cEEEEeec--CCCCeEEEEEecCCCEEEEEeCCCeE
Q 018858 8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK---DVQLVTDV--GNGPVTSLCFKSGNEDIIYVSSGKEV 82 (349)
Q Consensus 8 ~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~---~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i 82 (349)
+.+| .|.+-|.++.++.. .++++||+. |.|+|||+... .++..+.. ....+.++.+.|+|+.|++|++-.++
T Consensus 413 ~~tL-~HGEvVcAvtIS~~-trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastl 489 (705)
T KOG0639|consen 413 INTL-AHGEVVCAVTISNP-TRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTL 489 (705)
T ss_pred hhhh-ccCcEEEEEEecCC-cceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecccccee
Confidence 3444 48888888888887 789999986 78999999643 22333332 35678899999999999999999999
Q ss_pred EEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCC
Q 018858 83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEG 162 (349)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 162 (349)
.|||+.... .+....+.........++.+||.+..++++.||.|.|||+.+...++.|+ +|.+.+.||..++
T Consensus 490 siWDLAapT-prikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq-GhtDGascIdis~------ 561 (705)
T KOG0639|consen 490 SIWDLAAPT-PRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ-GHTDGASCIDISK------ 561 (705)
T ss_pred eeeeccCCC-cchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeeccc-CCCCCceeEEecC------
Confidence 999998643 22222333333467889999999999999999999999999999999999 9999999999999
Q ss_pred CCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEE
Q 018858 163 LPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE 242 (349)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (349)
+|..|-+|+-|.+||-||++.++.+ ......++|.++..+|++.++++
T Consensus 562 ------------------------------dGtklWTGGlDntvRcWDlregrql--qqhdF~SQIfSLg~cP~~dWlav 609 (705)
T KOG0639|consen 562 ------------------------------DGTKLWTGGLDNTVRCWDLREGRQL--QQHDFSSQIFSLGYCPTGDWLAV 609 (705)
T ss_pred ------------------------------CCceeecCCCccceeehhhhhhhhh--hhhhhhhhheecccCCCccceee
Confidence 8999999999999999999986543 33445678999999999999996
Q ss_pred -eeeeeecCce-eeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccc
Q 018858 243 -MEILDQSGGK-RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKK 320 (349)
Q Consensus 243 -~~~~~~~~~~-~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (349)
+.+....+.. .....+.+..|+..|.++.|+ +-|+++++.+.|+.+..|...-+. .++.. .-...
T Consensus 610 GMens~vevlh~skp~kyqlhlheScVLSlKFa---~cGkwfvStGkDnlLnawrtPyGa---------siFqs-kE~Ss 676 (705)
T KOG0639|consen 610 GMENSNVEVLHTSKPEKYQLHLHESCVLSLKFA---YCGKWFVSTGKDNLLNAWRTPYGA---------SIFQS-KESSS 676 (705)
T ss_pred ecccCcEEEEecCCccceeecccccEEEEEEec---ccCceeeecCchhhhhhccCcccc---------ceeec-cccCc
Confidence 2222222211 122334566789999999999 899999999999999999998873 32222 34568
Q ss_pred eEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 321 VNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 321 v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
|.++.++. |.++++||+.|....||.+
T Consensus 677 VlsCDIS~-ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 677 VLSCDISF-DDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ceeeeecc-CceEEEecCCCcceEEEEE
Confidence 89999977 7789999999998888865
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-28 Score=181.87 Aligned_cols=264 Identities=13% Similarity=0.166 Sum_probs=197.6
Q ss_pred CCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC----cEEEEeecCCCCeEEEEEec--CCCEEEEEeCCCeEEEEE
Q 018858 13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK----DVQLVTDVGNGPVTSLCFKS--GNEDIIYVSSGKEVKSFD 86 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd 86 (349)
+|++-|.|+.|.+. |+.+|||+.|++++|||.++. .+....+.|.+.|..+.|.+ -|+.+|+++.|+++.||.
T Consensus 11 ~h~DlihdVs~D~~-GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFY-GRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred CCcceeeeeeeccc-CceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 79999999999998 899999999999999996543 34567788999999999964 689999999999999997
Q ss_pred ccC------CCcccceeeccCcccceEEEEEccC--CCEEEEEcCCCcEEEEEcCCceEec------eec------cccc
Q 018858 87 VHM------PASWRPLESYNYNKEEINQIVCNPK--SSFLACADDGGDVKIIDIRQHCLYK------SLR------AGHS 146 (349)
Q Consensus 87 ~~~------~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~------~~~------~~~~ 146 (349)
=.. +........+......|+.+.|.|. |-.+|+++.||.++||+.-..-.+. +++ ..+.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 521 1233344556666788999999995 6789999999999999875432222 221 1244
Q ss_pred cceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCC-----CeEEEEEccCceeeeecC
Q 018858 147 SICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD-----GVVDVINIESELNISRSK 221 (349)
Q Consensus 147 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~ 221 (349)
.+..|+.|+|.. ....+|++|+.+ +.+.||.....
T Consensus 170 ~~~~CvsWn~sr---------------------------------~~~p~iAvgs~e~a~~~~~~~Iye~~e~------- 209 (361)
T KOG2445|consen 170 QPCFCVSWNPSR---------------------------------MHEPLIAVGSDEDAPHLNKVKIYEYNEN------- 209 (361)
T ss_pred CcceEEeecccc---------------------------------ccCceEEEEcccCCccccceEEEEecCC-------
Confidence 566777777621 145678888766 47888887753
Q ss_pred CCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEee-ecCCccEEEEeeCCCeEEEEecCCCc
Q 018858 222 STTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSM-FGERGKYLISGGNDKLVKVWDCSRFQ 300 (349)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~-~~~~~~~l~s~~~d~~i~vwd~~~~~ 300 (349)
.+....+.++.+|..+|++|+|.| .+..-..||+++.|| |+||.+....
T Consensus 210 -----------------------------~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~ 259 (361)
T KOG2445|consen 210 -----------------------------GRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVAR 259 (361)
T ss_pred -----------------------------cceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeecc
Confidence 223455667889999999999996 112235789999999 9999998522
Q ss_pred ce-----------ecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 301 GV-----------QTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 301 ~~-----------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.. ...-+-..+..+.+|++.|..+.|+- .|..|++.|+||.|++|..
T Consensus 260 s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNm-tGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 260 SAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNM-TGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred chhhhhcccCCCCccccceEEeeeccCCCCceEEEEEee-eeeEEeecCCCceeeehhh
Confidence 10 00111244556778999999999976 7889999999999999974
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=196.95 Aligned_cols=248 Identities=12% Similarity=0.128 Sum_probs=199.6
Q ss_pred EEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEE
Q 018858 51 QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKII 130 (349)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 130 (349)
.+.+..|...|.-+.||++|++||+++.|.+..+|++......+...++.+|..+|..+.|+||.+++++++.+..+.+|
T Consensus 217 ~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 217 WQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLW 296 (519)
T ss_pred hhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeec
Confidence 45677899999999999999999999999999999987655567778889999999999999999999999999999999
Q ss_pred EcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEE
Q 018858 131 DIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVIN 210 (349)
Q Consensus 131 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d 210 (349)
|+.++.....++.++...+.+++|.| |+..+++|+.|+.+..||
T Consensus 297 Dv~tgd~~~~y~~~~~~S~~sc~W~p------------------------------------Dg~~~V~Gs~dr~i~~wd 340 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSGLGFSVSSCAWCP------------------------------------DGFRFVTGSPDRTIIMWD 340 (519)
T ss_pred cCCcchhhhhcccCcCCCcceeEEcc------------------------------------CCceeEecCCCCcEEEec
Confidence 99999998888745568899999999 899999999999999999
Q ss_pred ccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCce-e--eeeeeeecCCCcceEEEEEeeecCCccEEEEeeC
Q 018858 211 IESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGK-R--LHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN 287 (349)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~ 287 (349)
+..+. ...........+..++..+||++++.+. .|..+.. . ...-..+.....+|+++.++ .+++++++.=.
T Consensus 341 lDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~-~d~~i~l~~~e~~~dr~lise~~~its~~iS---~d~k~~LvnL~ 415 (519)
T KOG0293|consen 341 LDGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVT-VDKKIRLYNREARVDRGLISEEQPITSFSIS---KDGKLALVNLQ 415 (519)
T ss_pred CCcch-hhcccccccceeEEEEEcCCCcEEEEEe-cccceeeechhhhhhhccccccCceeEEEEc---CCCcEEEEEcc
Confidence 98643 2222333335578899999999998644 2222111 0 01111122335689999999 89999999999
Q ss_pred CCeEEEEecCCCcceecccccceeeeccccccc--eEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 288 DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKK--VNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 288 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
+..+++||++.. .++..+.+|... +..-||--.+..++++|+.|++|+||+.
T Consensus 416 ~qei~LWDl~e~---------~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr 469 (519)
T KOG0293|consen 416 DQEIHLWDLEEN---------KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHR 469 (519)
T ss_pred cCeeEEeecchh---------hHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEc
Confidence 999999999976 677788888764 4444665556679999999999999985
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=213.60 Aligned_cols=215 Identities=14% Similarity=0.191 Sum_probs=173.3
Q ss_pred EEEee-cCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccC--------------------------------CC------
Q 018858 51 QLVTD-VGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM--------------------------------PA------ 91 (349)
Q Consensus 51 ~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--------------------------------~~------ 91 (349)
.+.+. .|.+.|.++.|+++|+|||+||.|+.|+||.+.. ..
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 34555 7999999999999999999999999999998755 00
Q ss_pred -------------------cccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEE
Q 018858 92 -------------------SWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSV 152 (349)
Q Consensus 92 -------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 152 (349)
..+++..+.+|.+.|.++.|+. .++|++++.|++|++|++...+++..|. |.+-|+|+
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~--HndfVTcV 415 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS--HNDFVTCV 415 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEe--cCCeeEEE
Confidence 1133445678889999999996 4689999999999999999999999998 99999999
Q ss_pred EEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceee
Q 018858 153 QFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQS 232 (349)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 232 (349)
+|+|. |.++|++|+-||.||||++...
T Consensus 416 aFnPv-----------------------------------DDryFiSGSLD~KvRiWsI~d~------------------ 442 (712)
T KOG0283|consen 416 AFNPV-----------------------------------DDRYFISGSLDGKVRLWSISDK------------------ 442 (712)
T ss_pred Eeccc-----------------------------------CCCcEeecccccceEEeecCcC------------------
Confidence 99996 8999999999999999999863
Q ss_pred eeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceee
Q 018858 233 TSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLI 312 (349)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 312 (349)
.+-....-..-|++++|. |||++.+.|+.+|..++|+....+.....+-.-.-.
T Consensus 443 -----------------------~Vv~W~Dl~~lITAvcy~---PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~ 496 (712)
T KOG0283|consen 443 -----------------------KVVDWNDLRDLITAVCYS---PDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNK 496 (712)
T ss_pred -----------------------eeEeehhhhhhheeEEec---cCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccC
Confidence 122222334679999999 899999999999999999998875332211000000
Q ss_pred eccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 313 KNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 313 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.-..|. .|+.+.|+|.+...+++.+.|..|+|+|+
T Consensus 497 Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~ 531 (712)
T KOG0283|consen 497 KKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDG 531 (712)
T ss_pred ccccCc-eeeeeEecCCCCCeEEEecCCCceEEEec
Confidence 111244 89999999977777999999999999997
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.4e-29 Score=195.78 Aligned_cols=248 Identities=17% Similarity=0.222 Sum_probs=197.4
Q ss_pred eCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 018858 12 RGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA 91 (349)
Q Consensus 12 ~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 91 (349)
++|.+.|.+++.+++ ++||++|+.|..|.||+.++.+.++.+.+|.+.|.+++|-.....+++++.|+.|++|+++.
T Consensus 199 ~~h~keil~~avS~D-gkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~-- 275 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSD-GKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ-- 275 (479)
T ss_pred ccccceeEEEEEcCC-CcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhH--
Confidence 489999999999999 89999999999999999999999999999999999999998888999999999999999985
Q ss_pred cccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCc
Q 018858 92 SWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAG 171 (349)
Q Consensus 92 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 171 (349)
...+.++.+|.+.|..+.....++.+-+|+.|.++++|++.... ...+. ++.+.+-|++|-.
T Consensus 276 -~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees-qlifr-g~~~sidcv~~In--------------- 337 (479)
T KOG0299|consen 276 -LSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES-QLIFR-GGEGSIDCVAFIN--------------- 337 (479)
T ss_pred -hHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccc-eeeee-CCCCCeeeEEEec---------------
Confidence 35566777889999999888888888888899999999995332 23455 6788899999875
Q ss_pred cccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCc
Q 018858 172 QCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG 251 (349)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (349)
...|++|+.+|.|.+|++-+.+.+......++.
T Consensus 338 ----------------------~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv------------------------- 370 (479)
T KOG0299|consen 338 ----------------------DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGV------------------------- 370 (479)
T ss_pred ----------------------ccceeeccCCceEEEeeecccCceeEeeccccc-------------------------
Confidence 578999999999999999876544433222100
Q ss_pred eeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCC
Q 018858 252 KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTES 331 (349)
Q Consensus 252 ~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 331 (349)
......-.+...|++++.. |...++++|+.+|.|++|-+..+.... .++..+ ...+.|++++|++ +|
T Consensus 371 ---~~~~~~~~~~~Witsla~i---~~sdL~asGS~~G~vrLW~i~~g~r~i-----~~l~~l-s~~GfVNsl~f~~-sg 437 (479)
T KOG0299|consen 371 ---IPELDPVNGNFWITSLAVI---PGSDLLASGSWSGCVRLWKIEDGLRAI-----NLLYSL-SLVGFVNSLAFSN-SG 437 (479)
T ss_pred ---cCCccccccccceeeeEec---ccCceEEecCCCCceEEEEecCCcccc-----ceeeec-ccccEEEEEEEcc-CC
Confidence 0000011233589999999 888999999999999999999873211 233333 3678999999987 77
Q ss_pred CcEEEe-eCC
Q 018858 332 ENLVVC-DTS 340 (349)
Q Consensus 332 ~~l~~~-~~d 340 (349)
+.+++| +..
T Consensus 438 k~ivagiGkE 447 (479)
T KOG0299|consen 438 KRIVAGIGKE 447 (479)
T ss_pred CEEEEecccc
Confidence 766655 443
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-29 Score=182.83 Aligned_cols=240 Identities=17% Similarity=0.210 Sum_probs=194.6
Q ss_pred EEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccC-CCEEEEEcCCCcEEEE
Q 018858 52 LVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK-SSFLACADDGGDVKII 130 (349)
Q Consensus 52 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~ 130 (349)
..+++|.+.|.+++|+.+|..+++++.|+++.+|+++.... ..-....+|.+.|..++|+|. ...|++++.|++|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~-~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRF-RKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhh-hhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 45667889999999999999999999999999999986532 222345678888999999885 4889999999999999
Q ss_pred EcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEE
Q 018858 131 DIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVIN 210 (349)
Q Consensus 131 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d 210 (349)
|.+.+++..... ..+.-.-+.|+| +|.++++++.|..|.+.|
T Consensus 93 d~r~~k~~~~i~--~~~eni~i~wsp------------------------------------~g~~~~~~~kdD~it~id 134 (313)
T KOG1407|consen 93 DIRSGKCTARIE--TKGENINITWSP------------------------------------DGEYIAVGNKDDRITFID 134 (313)
T ss_pred EeccCcEEEEee--ccCcceEEEEcC------------------------------------CCCEEEEecCcccEEEEE
Confidence 999999988876 344455678888 899999999999999999
Q ss_pred ccCceeeeecCCCCCCccceeeeeccccEEE-Eeee--eeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeC
Q 018858 211 IESELNISRSKSTTKPLKGSQSTSKVNIRDA-EMEI--LDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN 287 (349)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~ 287 (349)
.++.+...... .......++|+.++.++. +.|. .+.-....++++..+++|...-.||.|+ |+|+|+|+|+.
T Consensus 135 ~r~~~~~~~~~--~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~---p~GryfA~GsA 209 (313)
T KOG1407|consen 135 ARTYKIVNEEQ--FKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFD---PDGRYFATGSA 209 (313)
T ss_pred ecccceeehhc--ccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEEC---CCCceEeeccc
Confidence 99865444332 234556777886666554 3332 2222334667888999999999999999 99999999999
Q ss_pred CCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEE
Q 018858 288 DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKV 345 (349)
Q Consensus 288 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 345 (349)
|-.+.+||++.. -.+..+..+.-+|..+.|+. +|++|++++.|..|-|
T Consensus 210 DAlvSLWD~~EL---------iC~R~isRldwpVRTlSFS~-dg~~lASaSEDh~IDI 257 (313)
T KOG1407|consen 210 DALVSLWDVDEL---------ICERCISRLDWPVRTLSFSH-DGRMLASASEDHFIDI 257 (313)
T ss_pred cceeeccChhHh---------hhheeeccccCceEEEEecc-CcceeeccCccceEEe
Confidence 999999999987 66778888999999999976 9999999999987754
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-29 Score=197.27 Aligned_cols=228 Identities=18% Similarity=0.285 Sum_probs=184.7
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc-------EEEEeecCCCCeEEEEEec-CCCEEEEEe
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD-------VQLVTDVGNGPVTSLCFKS-GNEDIIYVS 77 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~-------~~~~~~~~~~~v~~~~~~~-~~~~l~~~~ 77 (349)
.+-.+|.+|++.-+.++|++...-.|++++.|+.|++||+.... ....+.+|...|..++|++ +.+.+++++
T Consensus 168 ~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~ 247 (422)
T KOG0264|consen 168 RPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVG 247 (422)
T ss_pred CCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeec
Confidence 34458999999889999999877789999999999999986422 3567889999999999998 455688899
Q ss_pred CCCeEEEEEccCCCcccceeeccCcccceEEEEEccC-CCEEEEEcCCCcEEEEEcCCc-eEeceeccccccceeEEEEc
Q 018858 78 SGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK-SSFLACADDGGDVKIIDIRQH-CLYKSLRAGHSSICSSVQFI 155 (349)
Q Consensus 78 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~ 155 (349)
.|+.+.|||++++ ..++.....+|...+.|++|+|- +..||+|+.|++|++||+|+. +++.++. +|...|..+.|+
T Consensus 248 dd~~L~iwD~R~~-~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e-~H~dev~~V~WS 325 (422)
T KOG0264|consen 248 DDGKLMIWDTRSN-TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFE-GHEDEVFQVEWS 325 (422)
T ss_pred CCCeEEEEEcCCC-CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceecc-CCCcceEEEEeC
Confidence 9999999999974 44566667789999999999995 477899999999999999964 4677888 999999999999
Q ss_pred cCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeec
Q 018858 156 PWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSK 235 (349)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (349)
|. ....|++++.|+.+.+||+..-......
T Consensus 326 Ph-----------------------------------~etvLASSg~D~rl~vWDls~ig~eq~~--------------- 355 (422)
T KOG0264|consen 326 PH-----------------------------------NETVLASSGTDRRLNVWDLSRIGEEQSP--------------- 355 (422)
T ss_pred CC-----------------------------------CCceeEecccCCcEEEEeccccccccCh---------------
Confidence 96 6789999999999999999852111100
Q ss_pred cccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCC
Q 018858 236 VNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR 298 (349)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 298 (349)
+-......+++..-.||...|..+.|+| .+...+++.++|+.+.||.+..
T Consensus 356 -----------eda~dgppEllF~HgGH~~kV~DfsWnp--~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 356 -----------EDAEDGPPELLFIHGGHTAKVSDFSWNP--NEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred -----------hhhccCCcceeEEecCcccccccccCCC--CCCeEEEEecCCceEEEeeccc
Confidence 0001223466778889999999999994 2334678889999999999875
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-30 Score=195.22 Aligned_cols=206 Identities=19% Similarity=0.294 Sum_probs=180.0
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCccccee-----eccCcccceEEEEEccCCCEEEEEcCCCcEEEEE
Q 018858 57 GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLE-----SYNYNKEEINQIVCNPKSSFLACADDGGDVKIID 131 (349)
Q Consensus 57 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d 131 (349)
..+-+.|..|+|+|++|++|+.||.|.+|+.-+++..+.++ .+..++.+|.|+.|+.|...+|+|+.||.|++|.
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWr 291 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWR 291 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEE
Confidence 34567889999999999999999999999999887555443 3445678999999999999999999999999999
Q ss_pred cCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEc
Q 018858 132 IRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINI 211 (349)
Q Consensus 132 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 211 (349)
+++|.+++.|...|...|+|+.|+. ++..+++++.|.++++.-+
T Consensus 292 i~tG~ClRrFdrAHtkGvt~l~FSr------------------------------------D~SqiLS~sfD~tvRiHGl 335 (508)
T KOG0275|consen 292 IETGQCLRRFDRAHTKGVTCLSFSR------------------------------------DNSQILSASFDQTVRIHGL 335 (508)
T ss_pred EecchHHHHhhhhhccCeeEEEEcc------------------------------------CcchhhcccccceEEEecc
Confidence 9999999999768999999999999 7888999999999999999
Q ss_pred cCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeE
Q 018858 212 ESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLV 291 (349)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i 291 (349)
+++ ++++.+++|.+.|+...|. ++|..+++++.||+|
T Consensus 336 KSG----------------------------------------K~LKEfrGHsSyvn~a~ft---~dG~~iisaSsDgtv 372 (508)
T KOG0275|consen 336 KSG----------------------------------------KCLKEFRGHSSYVNEATFT---DDGHHIISASSDGTV 372 (508)
T ss_pred ccc----------------------------------------hhHHHhcCccccccceEEc---CCCCeEEEecCCccE
Confidence 986 7888999999999999999 999999999999999
Q ss_pred EEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 292 KVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 292 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
+||+.++.++..+ ....+...+|+++-..|.+...+++|...++|+|-++
T Consensus 373 kvW~~KtteC~~T-------fk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~ 422 (508)
T KOG0275|consen 373 KVWHGKTTECLST-------FKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM 422 (508)
T ss_pred EEecCcchhhhhh-------ccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec
Confidence 9999999854321 1223456688999888988889999999999998776
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-30 Score=213.94 Aligned_cols=239 Identities=19% Similarity=0.241 Sum_probs=193.5
Q ss_pred eeeEEEEecCCCceEEEeCCCCcEEEEECCC---CcEEEEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEEccCCCc
Q 018858 17 TATCCIASRDRPGFVASSGEDGCICWFDLRS---KDVQLVTDVGNGPVTSLCFKS-GNEDIIYVSSGKEVKSFDVHMPAS 92 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~---~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~ 92 (349)
.+..+.|.....++|||++..|.|.+||+.. .+++..+..|...+.++.|++ ...+|++|+.||.|++||++..+
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~- 167 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK- 167 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc-
Confidence 3556677765578999999999999999986 556678889999999999988 45678999999999999999653
Q ss_pred ccceeeccCcccceEEEEEcc-CCCEEEEEcCCCcEEEEEcCCc-eEeceeccccccceeEEEEccCCCCCCCCCCCCCC
Q 018858 93 WRPLESYNYNKEEINQIVCNP-KSSFLACADDGGDVKIIDIRQH-CLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNA 170 (349)
Q Consensus 93 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 170 (349)
...++.+....|..+.|+| .+..|+++.+.|.+.+||+|.. ++...+. .|.++|.|+.|+|
T Consensus 168 --S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~-AH~GpV~c~nwhP-------------- 230 (839)
T KOG0269|consen 168 --SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLT-AHNGPVLCLNWHP-------------- 230 (839)
T ss_pred --ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhh-cccCceEEEeecC--------------
Confidence 3444555678899999999 4688999999999999999965 4556677 8999999999999
Q ss_pred ccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecC
Q 018858 171 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG 250 (349)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (349)
++.+||+|+.|+.|+|||..+.+
T Consensus 231 ----------------------nr~~lATGGRDK~vkiWd~t~~~----------------------------------- 253 (839)
T KOG0269|consen 231 ----------------------NREWLATGGRDKMVKIWDMTDSR----------------------------------- 253 (839)
T ss_pred ----------------------CCceeeecCCCccEEEEeccCCC-----------------------------------
Confidence 78999999999999999998632
Q ss_pred ceeeeeeeeecCCCcceEEEEEeeecCCccEEEEee--CCCeEEEEecCCCcceecccccceeeeccccccceEEEEeec
Q 018858 251 GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG--NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP 328 (349)
Q Consensus 251 ~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 328 (349)
.....++. ...++.++.|-| .....|++++ .|-.|+|||++... -+...+..|...++.++|-.
T Consensus 254 ---~~~~~tIn-Tiapv~rVkWRP--~~~~hLAtcsmv~dtsV~VWDvrRPY--------IP~~t~~eH~~~vt~i~W~~ 319 (839)
T KOG0269|consen 254 ---AKPKHTIN-TIAPVGRVKWRP--ARSYHLATCSMVVDTSVHVWDVRRPY--------IPYATFLEHTDSVTGIAWDS 319 (839)
T ss_pred ---ccceeEEe-ecceeeeeeecc--CccchhhhhhccccceEEEEeecccc--------ccceeeeccCccccceeccC
Confidence 12222332 246899999994 3334567665 68899999999864 34567788999999999977
Q ss_pred CCCCcEEEeeCCCeEE
Q 018858 329 TESENLVVCDTSKVVK 344 (349)
Q Consensus 329 ~~~~~l~~~~~dg~i~ 344 (349)
.|...+.+++.||+|.
T Consensus 320 ~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 320 GDRINLWSCSKDGTVL 335 (839)
T ss_pred CCceeeEeecCccHHH
Confidence 6777899999999764
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-28 Score=196.10 Aligned_cols=288 Identities=14% Similarity=0.085 Sum_probs=210.5
Q ss_pred eeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcE----EEEe-ecCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 018858 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV----QLVT-DVGNGPVTSLCFKSGNEDIIYVSSGKEVK 83 (349)
Q Consensus 9 ~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~----~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 83 (349)
-.|++|+..|.++++.|. |..|++|+.|..|++||+..... .+.+ ......|.+++|++.|+.|++.+.....+
T Consensus 161 i~l~hgtk~Vsal~~Dp~-GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak 239 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPS-GARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK 239 (641)
T ss_pred EeccCCceEEEEeeecCC-CceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee
Confidence 457899999999999998 89999999999999999975432 1222 22345799999999999999999888999
Q ss_pred EEEccCCC---------cccceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCc-eEeceecc----ccccc
Q 018858 84 SFDVHMPA---------SWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQH-CLYKSLRA----GHSSI 148 (349)
Q Consensus 84 iwd~~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~-~~~~~~~~----~~~~~ 148 (349)
++|-.-.. -+..+....+|...++|.+|+|.. ..|++++.||++++||+... +.++.++. +..-+
T Consensus 240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~ 319 (641)
T KOG0772|consen 240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP 319 (641)
T ss_pred EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccC
Confidence 99865321 122334456788899999999976 68899999999999999843 33333331 22346
Q ss_pred eeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceee----eecCCCC
Q 018858 149 CSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI----SRSKSTT 224 (349)
Q Consensus 149 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~ 224 (349)
++.++|+| +++.+|.|+.||.|.+|+..+.... ....+..
T Consensus 320 ~tsC~~nr------------------------------------dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~ 363 (641)
T KOG0772|consen 320 VTSCAWNR------------------------------------DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLP 363 (641)
T ss_pred ceeeecCC------------------------------------CcchhhhcccCCceeeeecCCcccccceEeeeccCC
Confidence 78888988 8899999999999999998653221 1223344
Q ss_pred CCccceeeeeccccEEEEeeeee---ecCce-eeeeeeeecCC--CcceEEEEEeeecCCccEEEEee------CCCeEE
Q 018858 225 KPLKGSQSTSKVNIRDAEMEILD---QSGGK-RLHLDYSVGGH--TAAASCVAFSMFGERGKYLISGG------NDKLVK 292 (349)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~h--~~~i~~i~~~~~~~~~~~l~s~~------~d~~i~ 292 (349)
+..|.+++||+||++|++-+..+ .+... ..+++....+- ..+-+.+.|+ |+.++|++|. ..|++.
T Consensus 364 g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FS---Pd~kli~TGtS~~~~~~~g~L~ 440 (641)
T KOG0772|consen 364 GQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFS---PDDKLILTGTSAPNGMTAGTLF 440 (641)
T ss_pred CCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccC---CCceEEEecccccCCCCCceEE
Confidence 56899999999999999643322 12111 11233332221 2345678899 8999999986 347899
Q ss_pred EEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEe
Q 018858 293 VWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVY 346 (349)
Q Consensus 293 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 346 (349)
+||..+. ..+..+.-....|..+.|+|.- +.|++++.||.++|+
T Consensus 441 f~d~~t~---------d~v~ki~i~~aSvv~~~WhpkL-NQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 441 FFDRMTL---------DTVYKIDISTASVVRCLWHPKL-NQIFAGSGDGTAHVY 484 (641)
T ss_pred EEeccce---------eeEEEecCCCceEEEEeecchh-hheeeecCCCceEEE
Confidence 9999987 4444444457788999999954 458888888999886
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-28 Score=191.05 Aligned_cols=283 Identities=15% Similarity=0.161 Sum_probs=226.4
Q ss_pred ceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC--cEEEEeecCCCCeEEEEEecCCC-EEEEEeCCCeEEEEEccCCC
Q 018858 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSK--DVQLVTDVGNGPVTSLCFKSGNE-DIIYVSSGKEVKSFDVHMPA 91 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~ 91 (349)
.+.|+++.|+|. ..+|++++.||++++|.++.. ..++.+.....+|.+.+|.|+|. .+++++....++.||+.+.+
T Consensus 213 ~~~I~sv~FHp~-~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 213 HGGITSVQFHPT-APLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred cCCceEEEecCC-CceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 367999999998 899999999999999998643 34677777789999999999999 89999999999999999865
Q ss_pred cccceeeccCc-ccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCC
Q 018858 92 SWRPLESYNYN-KEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNA 170 (349)
Q Consensus 92 ~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 170 (349)
. ..+....++ +..+.....+|++++|+..+..|.|.+.-..+++.+..++ -.+.+..+.|+.
T Consensus 292 ~-~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K--ieG~v~~~~fsS-------------- 354 (514)
T KOG2055|consen 292 V-TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK--IEGVVSDFTFSS-------------- 354 (514)
T ss_pred c-ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee--eccEEeeEEEec--------------
Confidence 3 233333222 3457788899999999999999999999999999999998 778899999998
Q ss_pred ccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeee--
Q 018858 171 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ-- 248 (349)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 248 (349)
+++.|++.+.+|.|.+||++...+...+.......-..++.++++.++|+ |+..+
T Consensus 355 ----------------------dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~-GS~~GiV 411 (514)
T KOG2055|consen 355 ----------------------DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLAT-GSDSGIV 411 (514)
T ss_pred ----------------------CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEe-ccCcceE
Confidence 78999999999999999999998888877776667778899999999995 32222
Q ss_pred --cC------ceeeeeeeeecCCCcceEEEEEeeecCCccEEEEee--CCCeEEEEecCCCcceecccccceeeeccccc
Q 018858 249 --SG------GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG--NDKLVKVWDCSRFQGVQTSINNDLLIKNINLN 318 (349)
Q Consensus 249 --~~------~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 318 (349)
.. ....+++..+..-...|+++.|+ ++.++||.+| .+..+++-.+.+...-... + .....-
T Consensus 412 NIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn---~d~qiLAiaS~~~knalrLVHvPS~TVFsNf----P--~~n~~v 482 (514)
T KOG2055|consen 412 NIYDGNSCFASTNPKPIKTVDNLTTAITSLQFN---HDAQILAIASRVKKNALRLVHVPSCTVFSNF----P--TSNTKV 482 (514)
T ss_pred EEeccchhhccCCCCchhhhhhhheeeeeeeeC---cchhhhhhhhhccccceEEEeccceeeeccC----C--CCCCcc
Confidence 21 12345566666566789999999 8999998877 4678999998886321100 0 112234
Q ss_pred cceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 319 KKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 319 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
+.|+|++|+| .+.+|+.|..+|.+.+|.|
T Consensus 483 g~vtc~aFSP-~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 483 GHVTCMAFSP-NSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred cceEEEEecC-CCceEEeecCCCceeeEee
Confidence 5799999999 5669999999999999987
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.8e-29 Score=207.36 Aligned_cols=246 Identities=18% Similarity=0.290 Sum_probs=195.3
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc----EEEEeecC---CCCeEEEEEec-CCCEEEEEeCCCeEEEEEc
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKD----VQLVTDVG---NGPVTSLCFKS-GNEDIIYVSSGKEVKSFDV 87 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~----~~~~~~~~---~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~ 87 (349)
....++...++ ...++.++. ..++||.+.... +...+... ...+..+.|.. ..++||+++..|.|.+||+
T Consensus 40 ~~~nAIs~nr~-~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 40 AKANAISVNRD-INQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDL 117 (839)
T ss_pred cccceEeecCC-cceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEec
Confidence 45566777787 566776665 467888765422 12221111 12344567764 5678999999999999999
Q ss_pred cCCCcccceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCC
Q 018858 88 HMPASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPEN 166 (349)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 166 (349)
......+.+..+..|+..+.++.|++.. .+|++|++||.|++||++..+-..++. +....|+.+.|+|.
T Consensus 118 nk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~-~nSESiRDV~fsp~--------- 187 (839)
T KOG0269|consen 118 NKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFR-SNSESIRDVKFSPG--------- 187 (839)
T ss_pred CccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccc-ccchhhhceeeccC---------
Confidence 8644456667788899999999999865 788999999999999999888888888 78889999999994
Q ss_pred CCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeee
Q 018858 167 NGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEIL 246 (349)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (349)
.+.+|+++...|.+.+||++...
T Consensus 188 --------------------------~~~~F~s~~dsG~lqlWDlRqp~------------------------------- 210 (839)
T KOG0269|consen 188 --------------------------YGNKFASIHDSGYLQLWDLRQPD------------------------------- 210 (839)
T ss_pred --------------------------CCceEEEecCCceEEEeeccCch-------------------------------
Confidence 68899999999999999999632
Q ss_pred eecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEe
Q 018858 247 DQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCT 326 (349)
Q Consensus 247 ~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 326 (349)
++...+.+|.++|.++.|+ |++.+|||||.|+.|+|||+.+.+ ...........++..+.|
T Consensus 211 --------r~~~k~~AH~GpV~c~nwh---Pnr~~lATGGRDK~vkiWd~t~~~--------~~~~~tInTiapv~rVkW 271 (839)
T KOG0269|consen 211 --------RCEKKLTAHNGPVLCLNWH---PNREWLATGGRDKMVKIWDMTDSR--------AKPKHTINTIAPVGRVKW 271 (839)
T ss_pred --------hHHHHhhcccCceEEEeec---CCCceeeecCCCccEEEEeccCCC--------ccceeEEeecceeeeeee
Confidence 5667889999999999999 899999999999999999998753 222233445678999999
Q ss_pred ecCCCCcEEEee--CCCeEEEeeCC
Q 018858 327 TPTESENLVVCD--TSKVVKVYSIS 349 (349)
Q Consensus 327 ~~~~~~~l~~~~--~dg~i~iw~~~ 349 (349)
-|.....|++++ .|-.|+|||++
T Consensus 272 RP~~~~hLAtcsmv~dtsV~VWDvr 296 (839)
T KOG0269|consen 272 RPARSYHLATCSMVVDTSVHVWDVR 296 (839)
T ss_pred ccCccchhhhhhccccceEEEEeec
Confidence 997777899986 78999999985
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=185.08 Aligned_cols=213 Identities=16% Similarity=0.263 Sum_probs=171.2
Q ss_pred EEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccC------C---------CcccceeeccCcccceEEEEEccCC
Q 018858 51 QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM------P---------ASWRPLESYNYNKEEINQIVCNPKS 115 (349)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~------~---------~~~~~~~~~~~~~~~v~~~~~~~~~ 115 (349)
...+..|.+++.+.+|+|||.++++|+.|..|+|.|++. . +....+.++-.|.++|+++.|+|..
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 345667999999999999999999999999999999872 1 1124556677788999999999999
Q ss_pred CEEEEEcCCCcEEEEEcCCceEeceec-cccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCC
Q 018858 116 SFLACADDGGDVKIIDIRQHCLYKSLR-AGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTN 194 (349)
Q Consensus 116 ~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (349)
..|++|+.|++|++||+......+.++ .....+|.++.|+| .|
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP------------------------------------sG 228 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP------------------------------------SG 228 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecC------------------------------------CC
Confidence 999999999999999998554333222 02456899999999 89
Q ss_pred cEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEee
Q 018858 195 KICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSM 274 (349)
Q Consensus 195 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~ 274 (349)
.+|++|..-.++++||+++.++-... ..-.+|.+.|+++.++
T Consensus 229 efllvgTdHp~~rlYdv~T~Qcfvsa-------------------------------------nPd~qht~ai~~V~Ys- 270 (430)
T KOG0640|consen 229 EFLLVGTDHPTLRLYDVNTYQCFVSA-------------------------------------NPDDQHTGAITQVRYS- 270 (430)
T ss_pred ceEEEecCCCceeEEeccceeEeeec-------------------------------------CcccccccceeEEEec-
Confidence 99999999999999999985322111 1234689999999999
Q ss_pred ecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeec-cccccc-eEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 275 FGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKN-INLNKK-VNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 275 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~-v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
+.+++.++++.||.|++||=-++ +++..+ ..|.+. |.+..| ..+++++++.+.|..+++|.+.
T Consensus 271 --~t~~lYvTaSkDG~IklwDGVS~---------rCv~t~~~AH~gsevcSa~F-tkn~kyiLsSG~DS~vkLWEi~ 335 (430)
T KOG0640|consen 271 --STGSLYVTASKDGAIKLWDGVSN---------RCVRTIGNAHGGSEVCSAVF-TKNGKYILSSGKDSTVKLWEIS 335 (430)
T ss_pred --CCccEEEEeccCCcEEeeccccH---------HHHHHHHhhcCCceeeeEEE-ccCCeEEeecCCcceeeeeeec
Confidence 89999999999999999998776 444444 346664 555555 5699999999999999999874
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-29 Score=204.77 Aligned_cols=251 Identities=14% Similarity=0.109 Sum_probs=208.7
Q ss_pred CCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC--cEEEEeecCCCCeEEEEE-ecCCCEEEEEeCCCeEE
Q 018858 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK--DVQLVTDVGNGPVTSLCF-KSGNEDIIYVSSGKEVK 83 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~ 83 (349)
.+.+++.|.+.|..++...+ ++.|++++.|.+|++|+...+ -+..++..|..-|.|+++ .++...+|+||-|+.|.
T Consensus 65 ~~asme~HsDWVNDiiL~~~-~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~If 143 (735)
T KOG0308|consen 65 YIASMEHHSDWVNDIILCGN-GKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIF 143 (735)
T ss_pred hhhhhhhhHhHHhhHHhhcC-CCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEE
Confidence 36788899999999999887 889999999999999999876 356678889999999999 78888999999999999
Q ss_pred EEEccCCCc--c-----cceeecc-CcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEc
Q 018858 84 SFDVHMPAS--W-----RPLESYN-YNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFI 155 (349)
Q Consensus 84 iwd~~~~~~--~-----~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 155 (349)
+||++++.. . .....+. ++...+++++.++.+..|++|+..+.+++||.++++.+..++ +|...|.++..+
T Consensus 144 lWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLr-GHTdNVr~ll~~ 222 (735)
T KOG0308|consen 144 LWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR-GHTDNVRVLLVN 222 (735)
T ss_pred EEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeee-ccccceEEEEEc
Confidence 999997622 1 1122233 678899999999999999999999999999999999999999 999999999999
Q ss_pred cCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeec
Q 018858 156 PWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSK 235 (349)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (349)
+ +|..+++++.||+|++||+...
T Consensus 223 d------------------------------------DGt~~ls~sSDgtIrlWdLgqQ--------------------- 245 (735)
T KOG0308|consen 223 D------------------------------------DGTRLLSASSDGTIRLWDLGQQ--------------------- 245 (735)
T ss_pred C------------------------------------CCCeEeecCCCceEEeeecccc---------------------
Confidence 9 8999999999999999999974
Q ss_pred cccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecc
Q 018858 236 VNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI 315 (349)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 315 (349)
+++.++..|...|+++..+ |+-..+++|+.||.|+.=|+++.. ....+.
T Consensus 246 -------------------rCl~T~~vH~e~VWaL~~~---~sf~~vYsG~rd~~i~~Tdl~n~~---------~~tlic 294 (735)
T KOG0308|consen 246 -------------------RCLATYIVHKEGVWALQSS---PSFTHVYSGGRDGNIYRTDLRNPA---------KSTLIC 294 (735)
T ss_pred -------------------ceeeeEEeccCceEEEeeC---CCcceEEecCCCCcEEecccCCch---------hheEee
Confidence 6778888899999999999 888999999999999999999862 222222
Q ss_pred ccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 316 NLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 316 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
....+|..+..+..+. -+-+++.|+.|+-|.+
T Consensus 295 k~daPv~~l~~~~~~~-~~WvtTtds~I~rW~~ 326 (735)
T KOG0308|consen 295 KEDAPVLKLHLHEHDN-SVWVTTTDSSIKRWKL 326 (735)
T ss_pred cCCCchhhhhhccccC-CceeeeccccceecCC
Confidence 3334555555544333 3466677888887764
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7e-28 Score=180.26 Aligned_cols=221 Identities=18% Similarity=0.285 Sum_probs=173.3
Q ss_pred eCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc------E----EEE-----eecCCCCeEEEEEec-CCCEEEE
Q 018858 12 RGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD------V----QLV-----TDVGNGPVTSLCFKS-GNEDIIY 75 (349)
Q Consensus 12 ~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~------~----~~~-----~~~~~~~v~~~~~~~-~~~~l~~ 75 (349)
..|.+.|+++...+.-++++++|+.||.|.+||++... . ... -.+|.-.|..+.|-| |..++.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 46889999999999879999999999999999997532 1 111 134778899999998 6667888
Q ss_pred EeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCC---CEEEEEcCCCcEEEEEcCCceEeceeccccccceeEE
Q 018858 76 VSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS---SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSV 152 (349)
Q Consensus 76 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 152 (349)
++.|.++++||..+.+....++- ++.|..-+++|-. .++|+|..+-.|++-|+.+|.....+. +|...|.++
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~m----e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls-GHr~~vlaV 194 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKM----EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS-GHRDGVLAV 194 (397)
T ss_pred ccccceEEEeecccceeeEEeec----CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec-cccCceEEE
Confidence 89999999999997644333222 4678888888843 477888899999999999999999999 999999999
Q ss_pred EEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCce-eeeecCCCCCCcccee
Q 018858 153 QFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL-NISRSKSTTKPLKGSQ 231 (349)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~ 231 (349)
.|+|. ..-.|++|+.||.|++||++... +...+
T Consensus 195 ~Wsp~-----------------------------------~e~vLatgsaDg~irlWDiRrasgcf~~l----------- 228 (397)
T KOG4283|consen 195 EWSPS-----------------------------------SEWVLATGSADGAIRLWDIRRASGCFRVL----------- 228 (397)
T ss_pred EeccC-----------------------------------ceeEEEecCCCceEEEEEeecccceeEEe-----------
Confidence 99994 44568899999999999999631 11111
Q ss_pred eeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcc
Q 018858 232 STSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG 301 (349)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 301 (349)
|.........++.-..|.+.++.++|+ .++.++++++.|..+++|+..+++.
T Consensus 229 ---------------D~hn~k~~p~~~~n~ah~gkvngla~t---Sd~~~l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 229 ---------------DQHNTKRPPILKTNTAHYGKVNGLAWT---SDARYLASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred ---------------ecccCccCccccccccccceeeeeeec---ccchhhhhccCccceEEeecccCcc
Confidence 111011123334556799999999999 8999999999999999999988764
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.4e-28 Score=182.47 Aligned_cols=257 Identities=14% Similarity=0.161 Sum_probs=209.1
Q ss_pred ccCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEEC------CC-----------------------------
Q 018858 3 DAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDL------RS----------------------------- 47 (349)
Q Consensus 3 ~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~------~~----------------------------- 47 (349)
+++.++.++.||.+.|+|+.|++. +.++++++.|++-.||.. ..
T Consensus 178 Esg~CL~~Y~GH~GSVNsikfh~s-~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~s 256 (481)
T KOG0300|consen 178 ESGACLATYTGHTGSVNSIKFHNS-GLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKS 256 (481)
T ss_pred ccccceeeecccccceeeEEeccc-cceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccccccccccccc
Confidence 367889999999999999999998 899999999999999972 11
Q ss_pred -C----cEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEc
Q 018858 48 -K----DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACAD 122 (349)
Q Consensus 48 -~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 122 (349)
+ -++..+.+|...|.+..|...|+.+++++.|.+-.+||++++ ..+..+.+|....+.++-+|..+++++++
T Consensus 257 D~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg---e~v~~LtGHd~ELtHcstHptQrLVvTsS 333 (481)
T KOG0300|consen 257 DGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETG---EVVNILTGHDSELTHCSTHPTQRLVVTSS 333 (481)
T ss_pred CCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccC---ceeccccCcchhccccccCCcceEEEEec
Confidence 0 124567889999999999999999999999999999999987 45566778889999999999999999999
Q ss_pred CCCcEEEEEcCCc-eEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEc
Q 018858 123 DGGDVKIIDIRQH-CLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK 201 (349)
Q Consensus 123 ~dg~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (349)
.|-+.++||++.. ..+..|+ +|...|++..|.- +..+++|+
T Consensus 334 rDtTFRLWDFReaI~sV~VFQ-GHtdtVTS~vF~~-------------------------------------dd~vVSgS 375 (481)
T KOG0300|consen 334 RDTTFRLWDFREAIQSVAVFQ-GHTDTVTSVVFNT-------------------------------------DDRVVSGS 375 (481)
T ss_pred cCceeEeccchhhcceeeeec-ccccceeEEEEec-------------------------------------CCceeecC
Confidence 9999999999843 4567788 9999999999986 45689999
Q ss_pred CCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccE
Q 018858 202 GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKY 281 (349)
Q Consensus 202 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~ 281 (349)
.|.+|++||+++-+ .++.++. ...+++.++++ ..++.
T Consensus 376 DDrTvKvWdLrNMR---------------------------------------splATIR-tdS~~NRvavs---~g~~i 412 (481)
T KOG0300|consen 376 DDRTVKVWDLRNMR---------------------------------------SPLATIR-TDSPANRVAVS---KGHPI 412 (481)
T ss_pred CCceEEEeeecccc---------------------------------------Ccceeee-cCCccceeEee---cCCce
Confidence 99999999999732 2333444 24678999998 67778
Q ss_pred EEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCC-CcEEEeeCCCeEEEeeCC
Q 018858 282 LISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTES-ENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 282 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~iw~~~ 349 (349)
++.--.+..|++||++...... -+...-.+|...|.+++|..... .-|++|+.|..+.=|++.
T Consensus 413 IAiPhDNRqvRlfDlnG~RlaR-----lPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in 476 (481)
T KOG0300|consen 413 IAIPHDNRQVRLFDLNGNRLAR-----LPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKIN 476 (481)
T ss_pred EEeccCCceEEEEecCCCcccc-----CCcccccccceeeeeeeccccCcccccccccccceeeeeEec
Confidence 8888888999999998852110 11123357999999999964211 359999999999999863
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.7e-28 Score=199.14 Aligned_cols=241 Identities=17% Similarity=0.271 Sum_probs=204.2
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEE--EEeecCCCCeEE-EEEec-CCCEEEEEeCCC
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQ--LVTDVGNGPVTS-LCFKS-GNEDIIYVSSGK 80 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~--~~~~~~~~~v~~-~~~~~-~~~~l~~~~~dg 80 (349)
-+.-+.+.+|+..|..+++.+. ..+++++.||++++|+-...+.+ ..+.+|.+.|.. +++.+ ++-.+++|+.|.
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~--~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~ 81 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDG--VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT 81 (745)
T ss_pred ceeEEEeccCccchheeEecCC--eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccc
Confidence 4677899999999999888754 57999999999999997655543 456667777766 77775 445699999999
Q ss_pred eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCC
Q 018858 81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPW 160 (349)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 160 (349)
.+.+|..... .++..+.+|+..|.+++...++. +++|+.|.++++|-. +++...++ +|...|+++...|
T Consensus 82 ~i~v~~~~~~---~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~-gH~asVWAv~~l~---- 150 (745)
T KOG0301|consen 82 TIIVFKLSQA---EPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQ-GHTASVWAVASLP---- 150 (745)
T ss_pred eEEEEecCCC---CchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccC-CcchheeeeeecC----
Confidence 9999998854 66777888999999999877776 999999999999975 55566688 9999999999998
Q ss_pred CCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEE
Q 018858 161 EGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRD 240 (349)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (349)
++ .+++|+.|..|++|.-.
T Consensus 151 --------------------------------e~-~~vTgsaDKtIklWk~~---------------------------- 169 (745)
T KOG0301|consen 151 --------------------------------EN-TYVTGSADKTIKLWKGG---------------------------- 169 (745)
T ss_pred --------------------------------CC-cEEeccCcceeeeccCC----------------------------
Confidence 44 88999999999999875
Q ss_pred EEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccc
Q 018858 241 AEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKK 320 (349)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (349)
+.++++.+|...|+.+++- + +.-+++++.||.|+.|++.. ..+....+|..-
T Consensus 170 --------------~~l~tf~gHtD~VRgL~vl---~-~~~flScsNDg~Ir~w~~~g----------e~l~~~~ghtn~ 221 (745)
T KOG0301|consen 170 --------------TLLKTFSGHTDCVRGLAVL---D-DSHFLSCSNDGSIRLWDLDG----------EVLLEMHGHTNF 221 (745)
T ss_pred --------------chhhhhccchhheeeeEEe---c-CCCeEeecCCceEEEEeccC----------ceeeeeeccceE
Confidence 5678999999999999998 4 45688999999999999955 678899999999
Q ss_pred eEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 321 VNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 321 v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
|+++.... ++..++++++|++++||+.
T Consensus 222 vYsis~~~-~~~~Ivs~gEDrtlriW~~ 248 (745)
T KOG0301|consen 222 VYSISMAL-SDGLIVSTGEDRTLRIWKK 248 (745)
T ss_pred EEEEEecC-CCCeEEEecCCceEEEeec
Confidence 99999655 5558999999999999984
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-26 Score=172.40 Aligned_cols=245 Identities=12% Similarity=0.095 Sum_probs=187.2
Q ss_pred cEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcC--CCc
Q 018858 49 DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD--GGD 126 (349)
Q Consensus 49 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~ 126 (349)
++.+.+......|.++.|+++|.++++++.|.++++||..+++..+.+.. .+..+..+.|......++.++. |.+
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~s---kkyG~~~~~Fth~~~~~i~sStk~d~t 81 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINS---KKYGVDLACFTHHSNTVIHSSTKEDDT 81 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeec---ccccccEEEEecCCceEEEccCCCCCc
Confidence 33445555678899999999999999999999999999998866555544 4567888888777767776665 789
Q ss_pred EEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeE
Q 018858 127 VKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVV 206 (349)
Q Consensus 127 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 206 (349)
|+..++.+.+.++.|. +|...|..++.+| -++.+++++.|++|
T Consensus 82 IryLsl~dNkylRYF~-GH~~~V~sL~~sP------------------------------------~~d~FlS~S~D~tv 124 (311)
T KOG1446|consen 82 IRYLSLHDNKYLRYFP-GHKKRVNSLSVSP------------------------------------KDDTFLSSSLDKTV 124 (311)
T ss_pred eEEEEeecCceEEEcC-CCCceEEEEEecC------------------------------------CCCeEEecccCCeE
Confidence 9999999999999999 9999999999999 67899999999999
Q ss_pred EEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCcee-----eeeeeee--c-CCCcceEEEEEeeecCC
Q 018858 207 DVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKR-----LHLDYSV--G-GHTAAASCVAFSMFGER 278 (349)
Q Consensus 207 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~--~-~h~~~i~~i~~~~~~~~ 278 (349)
++||++..++...+.. ..-...+|.|+|-++|+....+.....+ ..+..++ . +.....+.+.|+ ||
T Consensus 125 rLWDlR~~~cqg~l~~---~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS---~d 198 (311)
T KOG1446|consen 125 RLWDLRVKKCQGLLNL---SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFS---PD 198 (311)
T ss_pred EeeEecCCCCceEEec---CCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEc---CC
Confidence 9999997554443322 2234679999999998633322111111 1111222 1 345678999999 99
Q ss_pred ccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccc--e-EEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 279 GKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKK--V-NWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 279 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--v-~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
|++|+.+...+.+++.|.-++ .++..+..+... + ...+|.| |++++++|+.||.|.+|+++
T Consensus 199 GK~iLlsT~~s~~~~lDAf~G---------~~~~tfs~~~~~~~~~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~ 262 (311)
T KOG1446|consen 199 GKSILLSTNASFIYLLDAFDG---------TVKSTFSGYPNAGNLPLSATFTP-DSKFVLSGSDDGTIHVWNLE 262 (311)
T ss_pred CCEEEEEeCCCcEEEEEccCC---------cEeeeEeeccCCCCcceeEEECC-CCcEEEEecCCCcEEEEEcC
Confidence 999999999999999999998 444444444332 2 3455666 99999999999999999974
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-29 Score=208.98 Aligned_cols=238 Identities=17% Similarity=0.321 Sum_probs=209.8
Q ss_pred eeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 018858 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVH 88 (349)
Q Consensus 9 ~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 88 (349)
+.+..|...|.|+..-.. ++.+++|+.|..+-+|.+.....+..+.+|..+|.++.|++....|++|+.+|+|++||++
T Consensus 22 ~~~~~hsaav~~lk~~~s-~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDle 100 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKS-SRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLE 100 (825)
T ss_pred hhhhhhhhhhceeeeecc-ceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehh
Confidence 455678889999888555 7899999999999999998887788899999999999999999999999999999999999
Q ss_pred CCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCC
Q 018858 89 MPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNG 168 (349)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 168 (349)
.. +.+.++.+|...+..+.|+|-+.+++.|+.|..+++||.+...+...++ +|...+..+.|+|
T Consensus 101 eA---k~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~-s~~~vv~~l~lsP------------ 164 (825)
T KOG0267|consen 101 EA---KIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYK-SHTRVVDVLRLSP------------ 164 (825)
T ss_pred hh---hhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeec-CCcceeEEEeecC------------
Confidence 75 4455777888999999999999999999999999999999888889999 8999999999999
Q ss_pred CCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeee
Q 018858 169 NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ 248 (349)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (349)
+|++++.|+.|..+++||+..+
T Consensus 165 ------------------------~Gr~v~~g~ed~tvki~d~~ag---------------------------------- 186 (825)
T KOG0267|consen 165 ------------------------DGRWVASGGEDNTVKIWDLTAG---------------------------------- 186 (825)
T ss_pred ------------------------CCceeeccCCcceeeeeccccc----------------------------------
Confidence 8999999999999999999875
Q ss_pred cCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeec
Q 018858 249 SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP 328 (349)
Q Consensus 249 ~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 328 (349)
+....|..|.+.+..+.|+ |..-++++|+.|+++++||+++. ..+.........|.+.+|+|
T Consensus 187 ------k~~~ef~~~e~~v~sle~h---p~e~Lla~Gs~d~tv~f~dletf---------e~I~s~~~~~~~v~~~~fn~ 248 (825)
T KOG0267|consen 187 ------KLSKEFKSHEGKVQSLEFH---PLEVLLAPGSSDRTVRFWDLETF---------EVISSGKPETDGVRSLAFNP 248 (825)
T ss_pred ------ccccccccccccccccccC---chhhhhccCCCCceeeeecccee---------EEeeccCCccCCceeeeecC
Confidence 6778899999999999999 78888999999999999999986 45555555678899999988
Q ss_pred CCCCcEEEeeCC
Q 018858 329 TESENLVVCDTS 340 (349)
Q Consensus 329 ~~~~~l~~~~~d 340 (349)
+++.+++|..+
T Consensus 249 -~~~~~~~G~q~ 259 (825)
T KOG0267|consen 249 -DGKIVLSGEQI 259 (825)
T ss_pred -CceeeecCchh
Confidence 88777776543
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6e-27 Score=176.71 Aligned_cols=210 Identities=14% Similarity=0.215 Sum_probs=175.9
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCc--eEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeE
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPG--FVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEV 82 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~--~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 82 (349)
..++..|-.|.+.|+++.|.++ .. .|++|+.||.|.+|+.....++.++++|.+.|+.++++|.++.-++.+.|+.+
T Consensus 73 ~~qlg~ll~HagsitaL~F~~~-~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~l 151 (362)
T KOG0294|consen 73 RKQLGILLSHAGSITALKFYPP-LSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVL 151 (362)
T ss_pred hhhhcceeccccceEEEEecCC-cchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCcee
Confidence 4567778889999999999986 43 89999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCC
Q 018858 83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEG 162 (349)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 162 (349)
++||+-+++....+.. ....+.+.|+|.|.+|+.+..+ .|-+|.+.+.++...+. ....+.++.|.
T Consensus 152 r~WNLV~Gr~a~v~~L----~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~--~~~r~l~~~~l------- 217 (362)
T KOG0294|consen 152 RTWNLVRGRVAFVLNL----KNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIE--NPKRILCATFL------- 217 (362)
T ss_pred eeehhhcCccceeecc----CCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhh--ccccceeeeec-------
Confidence 9999988765443332 2344559999999999988876 58899998887766665 33557777776
Q ss_pred CCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEE
Q 018858 163 LPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE 242 (349)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (349)
++..|++|..|+.|++||....
T Consensus 218 ------------------------------~~~~L~vG~d~~~i~~~D~ds~---------------------------- 239 (362)
T KOG0294|consen 218 ------------------------------DGSELLVGGDNEWISLKDTDSD---------------------------- 239 (362)
T ss_pred ------------------------------CCceEEEecCCceEEEeccCCC----------------------------
Confidence 4788999999999999999863
Q ss_pred eeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCc
Q 018858 243 MEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ 300 (349)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 300 (349)
.+...+.+|..+|.++.+-. .|++.+|+|+|.||.|+|||++...
T Consensus 240 ------------~~~~~~~AH~~RVK~i~~~~-~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 240 ------------TPLTEFLAHENRVKDIASYT-NPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred ------------ccceeeecchhheeeeEEEe-cCCceEEEEeccCceEEEEEccccc
Confidence 56678889999999998431 1678899999999999999998753
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.7e-26 Score=191.42 Aligned_cols=337 Identities=14% Similarity=0.134 Sum_probs=244.1
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEE-EEEeCCCeE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDI-IYVSSGKEV 82 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i 82 (349)
+++.+.+++++...|+++.-+|- -..++.|..+|+|.+++++.++.+.+++...+.|++++|..||+.+ ++++..|.+
T Consensus 191 t~K~v~~f~~~~s~IT~ieqsPa-LDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m 269 (910)
T KOG1539|consen 191 TGKVVYTFQEFFSRITAIEQSPA-LDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDM 269 (910)
T ss_pred cCcEEEEecccccceeEeccCCc-ceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceE
Confidence 67889999999999999999998 7899999999999999999999999999556999999999999875 455566999
Q ss_pred EEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcC--Cc--eEeceeccccccceeEEEEc-cC
Q 018858 83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIR--QH--CLYKSLRAGHSSICSSVQFI-PW 157 (349)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~--~~~~~~~~~~~~~v~~~~~~-~~ 157 (349)
.+||++..+....+ ...|.+.+....|-|....+++++.|..+++|=.. .+ +.++.-. +|..+..++.|. .+
T Consensus 270 ~~wDLe~kkl~~v~--~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~-GHs~Pp~~irfy~~~ 346 (910)
T KOG1539|consen 270 AFWDLEKKKLINVT--RNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRG-GHSAPPSCIRFYGSQ 346 (910)
T ss_pred EEEEcCCCeeeeee--eccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeecc-CCCCCchheeeeccC
Confidence 99999965332222 33577889999999999999999999998887555 33 3344444 899999999987 33
Q ss_pred CCCCCC--CCCC----------------------------CCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEE
Q 018858 158 KPWEGL--PENN----------------------------GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVD 207 (349)
Q Consensus 158 ~~~~~~--~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 207 (349)
+.++.+ .|.+ .......+...+...++....-.. -.+.+++--.+...+
T Consensus 347 g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~-W~Nv~~~h~~~~~~~ 425 (910)
T KOG1539|consen 347 GHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKE-WDNVITAHKGKRSAY 425 (910)
T ss_pred cEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhh-hcceeEEecCcceEE
Confidence 333211 1110 001112223344444443321111 234555555778899
Q ss_pred EEEccCceeee-ecCCC----CCCccceeeeeccccEEEE---eeeeeecCceeeeeeeee---cCCCcceEEEEEeeec
Q 018858 208 VINIESELNIS-RSKST----TKPLKGSQSTSKVNIRDAE---MEILDQSGGKRLHLDYSV---GGHTAAASCVAFSMFG 276 (349)
Q Consensus 208 i~d~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~h~~~i~~i~~~~~~ 276 (349)
.|+.++...-. .+... ....+.+++.++-|++... .|..+......+.....+ ..|.++|+.++.+
T Consensus 426 tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D--- 502 (910)
T KOG1539|consen 426 TWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVD--- 502 (910)
T ss_pred EEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEec---
Confidence 99999765422 22222 3456778899999988774 333333333333444455 5799999999998
Q ss_pred CCccEEEEeeCCCeEEEEecCCCcceec--------------------------------ccccceeeeccccccceEEE
Q 018858 277 ERGKYLISGGNDKLVKVWDCSRFQGVQT--------------------------------SINNDLLIKNINLNKKVNWL 324 (349)
Q Consensus 277 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~v~~~ 324 (349)
.-++.+++++.||.+++||......... ..+.+++..+.+|.+.|+++
T Consensus 503 ~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~ 582 (910)
T KOG1539|consen 503 GTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDM 582 (910)
T ss_pred CCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeee
Confidence 7788999999999999999987642111 12345667778999999999
Q ss_pred EeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 325 CTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 325 ~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
+|+| ||++|++++.|++|++||++
T Consensus 583 ~FS~-DgrWlisasmD~tIr~wDlp 606 (910)
T KOG1539|consen 583 TFSP-DGRWLISASMDSTIRTWDLP 606 (910)
T ss_pred EeCC-CCcEEEEeecCCcEEEEecc
Confidence 9988 99999999999999999985
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-27 Score=198.52 Aligned_cols=248 Identities=13% Similarity=0.148 Sum_probs=204.6
Q ss_pred CCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEec---CCCEEEEEeCCCeEEEEEccC
Q 018858 13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKS---GNEDIIYVSSGKEVKSFDVHM 89 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~ 89 (349)
+....+.|++.+|+ +++||+|..-|+|+||++...+....++.|...|.|+.|+. ..++||+++.|+.|+|+|+..
T Consensus 457 d~r~G~R~~~vSp~-gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r 535 (1080)
T KOG1408|consen 457 DSRFGFRALAVSPD-GQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR 535 (1080)
T ss_pred CcccceEEEEECCC-cceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc
Confidence 34567999999999 99999999999999999999998889999999999999975 457899999999999999974
Q ss_pred CCcccceeeccCcccceEEEEEccCC--CEEEEEcCCCcEEEEEcCCceEeceec----cccccceeEEEEccCCCCCCC
Q 018858 90 PASWRPLESYNYNKEEINQIVCNPKS--SFLACADDGGDVKIIDIRQHCLYKSLR----AGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~ 163 (349)
....+.++.+|...|+++.|.-.| ..+++++.|+.|.+--.+...-...+. ......++.|+..|
T Consensus 536 --ny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp------- 606 (1080)
T KOG1408|consen 536 --NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP------- 606 (1080)
T ss_pred --ccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCC-------
Confidence 356677888899999999998776 778899999887654333111111111 01234577788877
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
+.+++++++.|..|+||++++++..+.+
T Consensus 607 -----------------------------~~k~v~t~cQDrnirif~i~sgKq~k~F----------------------- 634 (1080)
T KOG1408|consen 607 -----------------------------TSKLVVTVCQDRNIRIFDIESGKQVKSF----------------------- 634 (1080)
T ss_pred -----------------------------CcceEEEEecccceEEEeccccceeeee-----------------------
Confidence 7899999999999999999986433222
Q ss_pred eeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEE
Q 018858 244 EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNW 323 (349)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 323 (349)
+.-.+|.+....+... |.|.|+++...|+++.++|..++ +++....+|...|+.
T Consensus 635 --------------Kgs~~~eG~lIKv~lD---PSgiY~atScsdktl~~~Df~sg---------EcvA~m~GHsE~VTG 688 (1080)
T KOG1408|consen 635 --------------KGSRDHEGDLIKVILD---PSGIYLATSCSDKTLCFVDFVSG---------ECVAQMTGHSEAVTG 688 (1080)
T ss_pred --------------cccccCCCceEEEEEC---CCccEEEEeecCCceEEEEeccc---------hhhhhhcCcchheee
Confidence 2234577788888888 89999999999999999999998 778889999999999
Q ss_pred EEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 324 LCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 324 ~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
+.|.+ |-+.|++++.||.|.||.++
T Consensus 689 ~kF~n-DCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 689 VKFLN-DCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred eeecc-cchhheeecCCceEEEEECc
Confidence 99987 88899999999999999985
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-26 Score=193.70 Aligned_cols=291 Identities=15% Similarity=0.188 Sum_probs=216.4
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEee-cCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD-VGNGPVTSLCFKSGNEDIIYVSSGKEVK 83 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 83 (349)
.+.+..++.-.+.|+.++|..|+...+++|+..|.+.+||++..+.+..+. .|.+.|....|.|....+++++.|..++
T Consensus 234 dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk 313 (910)
T KOG1539|consen 234 DKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLK 313 (910)
T ss_pred CcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCcee
Confidence 466777874469999999999977788999999999999999887766555 5777777777777777777777777666
Q ss_pred EEEccCCC------------------------------------------------------------------------
Q 018858 84 SFDVHMPA------------------------------------------------------------------------ 91 (349)
Q Consensus 84 iwd~~~~~------------------------------------------------------------------------ 91 (349)
+|-.+++.
T Consensus 314 ~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~ 393 (910)
T KOG1539|consen 314 VWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKL 393 (910)
T ss_pred EEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhh
Confidence 66333110
Q ss_pred ------------------------------------cccce-------eeccCcccceEEEEEccCCCEEEEEcCCCcEE
Q 018858 92 ------------------------------------SWRPL-------ESYNYNKEEINQIVCNPKSSFLACADDGGDVK 128 (349)
Q Consensus 92 ------------------------------------~~~~~-------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 128 (349)
..+.+ ..++.....+++++.++.|++.+.|...|.|-
T Consensus 394 k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id 473 (910)
T KOG1539|consen 394 KLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTID 473 (910)
T ss_pred cCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEE
Confidence 00000 00000124577888888899999999999999
Q ss_pred EEEcCCceEeceec--cccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeE
Q 018858 129 IIDIRQHCLYKSLR--AGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVV 206 (349)
Q Consensus 129 i~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 206 (349)
+|++++|-...++. ..|..+|++++... .++.+++++.+|.+
T Consensus 474 ~fNmQSGi~r~sf~~~~ah~~~V~gla~D~------------------------------------~n~~~vsa~~~Gil 517 (910)
T KOG1539|consen 474 RFNMQSGIHRKSFGDSPAHKGEVTGLAVDG------------------------------------TNRLLVSAGADGIL 517 (910)
T ss_pred EEEcccCeeecccccCccccCceeEEEecC------------------------------------CCceEEEccCcceE
Confidence 99999998888771 27899999999987 78899999999999
Q ss_pred EEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeee---ecCceeeeeeeeecCCCcceEEEEEeeecCCccEEE
Q 018858 207 DVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD---QSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLI 283 (349)
Q Consensus 207 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~ 283 (349)
.+||..+...+.... ....+..+..+.....++..-..- ..+....+.++.+.+|...|+++.|| |||++|+
T Consensus 518 kfw~f~~k~l~~~l~--l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS---~DgrWli 592 (910)
T KOG1539|consen 518 KFWDFKKKVLKKSLR--LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFS---PDGRWLI 592 (910)
T ss_pred EEEecCCcceeeeec--cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeC---CCCcEEE
Confidence 999999865433332 234555666666655555311110 11112334667888999999999999 9999999
Q ss_pred EeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCC-CeEEEee
Q 018858 284 SGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS-KVVKVYS 347 (349)
Q Consensus 284 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~iw~ 347 (349)
+++.|++|++||+.++ .++ -......+.+++.++| +|++|||+..| .-|++|.
T Consensus 593 sasmD~tIr~wDlpt~---------~lI-D~~~vd~~~~sls~SP-ngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 593 SASMDSTIRTWDLPTG---------TLI-DGLLVDSPCTSLSFSP-NGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred EeecCCcEEEEeccCc---------cee-eeEecCCcceeeEECC-CCCEEEEEEecCceEEEEE
Confidence 9999999999999997 333 3345677889999988 89999999877 7899995
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-27 Score=182.12 Aligned_cols=254 Identities=15% Similarity=0.164 Sum_probs=193.9
Q ss_pred eCCceeeeEEEEecCC-CceEEEeCCCCcEEEEECCC----------------CcEEEEeecCCCCeEEEEEecCC-CEE
Q 018858 12 RGHKATATCCIASRDR-PGFVASSGEDGCICWFDLRS----------------KDVQLVTDVGNGPVTSLCFKSGN-EDI 73 (349)
Q Consensus 12 ~~h~~~i~~~~~~~~~-~~~l~t~~~dg~i~vwd~~~----------------~~~~~~~~~~~~~v~~~~~~~~~-~~l 73 (349)
-.|.+.|..+...+-+ ..+.++=+..|.++||++.. .+++.++.+|...=+.++|||-. ..|
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 4588888888887762 44566667889999999752 24577888899989999999932 237
Q ss_pred EEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCc---eEeceeccccccce
Q 018858 74 IYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQH---CLYKSLRAGHSSIC 149 (349)
Q Consensus 74 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~v 149 (349)
++|..-+.|++|...++.-..-...+.+|...|..++|+|.. ..|++|+.||+|+|||+|.+ .++.. + .|.+.|
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-k-Ah~sDV 305 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-K-AHNSDV 305 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-e-ccCCce
Confidence 788778899999998864333334466789999999999965 78899999999999999976 23333 5 789999
Q ss_pred eEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccc
Q 018858 150 SSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKG 229 (349)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 229 (349)
..+.|+. +..+|++|+.||+++|||++.-
T Consensus 306 NVISWnr------------------------------------~~~lLasG~DdGt~~iwDLR~~--------------- 334 (440)
T KOG0302|consen 306 NVISWNR------------------------------------REPLLASGGDDGTLSIWDLRQF--------------- 334 (440)
T ss_pred eeEEccC------------------------------------CcceeeecCCCceEEEEEhhhc---------------
Confidence 9999988 5558999999999999999972
Q ss_pred eeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceec-----
Q 018858 230 SQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT----- 304 (349)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~----- 304 (349)
....++..++-|..+|++|.|+| .+...|+++|.|.+|.+||+.-......
T Consensus 335 ----------------------~~~~pVA~fk~Hk~pItsieW~p--~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a 390 (440)
T KOG0302|consen 335 ----------------------KSGQPVATFKYHKAPITSIEWHP--HEDSVIAASGEDNQITIWDLSVEADEEEIDQEA 390 (440)
T ss_pred ----------------------cCCCcceeEEeccCCeeEEEecc--ccCceEEeccCCCcEEEEEeeccCChhhhcccc
Confidence 12256778888999999999997 5677889999999999999975433110
Q ss_pred -----ccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeE
Q 018858 305 -----SINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVV 343 (349)
Q Consensus 305 -----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 343 (349)
.-+..+++...+ ...+..+.|++....+|++.+.||--
T Consensus 391 ~~~L~dlPpQLLFVHqG-Qke~KevhWH~QiPG~lvsTa~dGfn 433 (440)
T KOG0302|consen 391 AEGLQDLPPQLLFVHQG-QKEVKEVHWHRQIPGLLVSTAIDGFN 433 (440)
T ss_pred ccchhcCCceeEEEecc-hhHhhhheeccCCCCeEEEeccccee
Confidence 011123322222 34688899999777799999999843
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.9e-27 Score=176.46 Aligned_cols=261 Identities=16% Similarity=0.182 Sum_probs=186.0
Q ss_pred CeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcE------EEEeecCCCCeEEEEEecCCCEEEEEe-CCC
Q 018858 8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV------QLVTDVGNGPVTSLCFKSGNEDIIYVS-SGK 80 (349)
Q Consensus 8 ~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg 80 (349)
+..|++|.+.|++++|+.+ |++|+|++.|+.|++|++++-.. ...++ -...+.++|+||-+.++... ...
T Consensus 79 ~~~LKgH~~~vt~~~FsSd-GK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve--~dhpT~V~FapDc~s~vv~~~~g~ 155 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSD-GKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE--YDHPTRVVFAPDCKSVVVSVKRGN 155 (420)
T ss_pred hhhhhccCCceeeeEEcCC-CceeEEEeCCceEEEEecchhhhhhhhHhhcccc--CCCceEEEECCCcceEEEEEccCC
Confidence 4568999999999999998 99999999999999999875321 11111 23467889999988766555 456
Q ss_pred eEEEEEccCCCccc---ce------eeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeE
Q 018858 81 EVKSFDVHMPASWR---PL------ESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSS 151 (349)
Q Consensus 81 ~i~iwd~~~~~~~~---~~------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~ 151 (349)
++++|.+...+... .. .....|...+..+-....+.+|++++.|..|.+|+++ |+.+..+. .....-+.
T Consensus 156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~id-tnq~~n~~ 233 (420)
T KOG2096|consen 156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSID-TNQSSNYD 233 (420)
T ss_pred EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeec-cccccccc
Confidence 89999775422111 00 1112344456666677778999999999999999998 88888777 55556667
Q ss_pred EEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCcccee
Q 018858 152 VQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQ 231 (349)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 231 (349)
.+.+| +|+++++++....|++|.+--+
T Consensus 234 aavSP------------------------------------~GRFia~~gFTpDVkVwE~~f~----------------- 260 (420)
T KOG2096|consen 234 AAVSP------------------------------------DGRFIAVSGFTPDVKVWEPIFT----------------- 260 (420)
T ss_pred eeeCC------------------------------------CCcEEEEecCCCCceEEEEEec-----------------
Confidence 78888 8999999999999999987532
Q ss_pred eeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceec-------
Q 018858 232 STSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT------- 304 (349)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~------- 304 (349)
.+|.+ ........+.+|...|..++|+ ++...+++.+.||+.+|||++-......
T Consensus 261 ---kdG~f------------qev~rvf~LkGH~saV~~~aFs---n~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~ 322 (420)
T KOG2096|consen 261 ---KDGTF------------QEVKRVFSLKGHQSAVLAAAFS---NSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKE 322 (420)
T ss_pred ---cCcch------------hhhhhhheeccchhheeeeeeC---CCcceeEEEecCCcEEEeeccceEecCCCchHhhc
Confidence 11110 1113456789999999999999 8999999999999999999864221100
Q ss_pred -----------------ccc-------------------ccee-eeccccccceEEEEeecCCCCcEEEeeCCCeEEEe
Q 018858 305 -----------------SIN-------------------NDLL-IKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVY 346 (349)
Q Consensus 305 -----------------~~~-------------------~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 346 (349)
.+. .+.. ..-..|...|.+++|.+ +|++++++++ ..+++.
T Consensus 323 g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~-~g~~~atcGd-r~vrv~ 399 (420)
T KOG2096|consen 323 GSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSS-DGKYIATCGD-RYVRVI 399 (420)
T ss_pred CCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecC-CCcEEeeecc-eeeeee
Confidence 000 0111 11124778899999988 8999998864 555554
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-26 Score=190.36 Aligned_cols=232 Identities=19% Similarity=0.249 Sum_probs=189.9
Q ss_pred EEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeecc
Q 018858 21 CIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYN 100 (349)
Q Consensus 21 ~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 100 (349)
+.|+. .+.|+.|.. ..+++|+..+++.......+...|+++.|+++|.+|++|..+|.|.|||..+.+ .+..+.
T Consensus 183 ldWss--~n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k---~~~~~~ 256 (484)
T KOG0305|consen 183 LDWSS--ANVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQK---KTRTLR 256 (484)
T ss_pred hhccc--CCeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcc---cccccc
Confidence 45664 356666653 579999999998766666568899999999999999999999999999998653 334444
Q ss_pred C-cccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEece-eccccccceeEEEEccCCCCCCCCCCCCCCccccCCce
Q 018858 101 Y-NKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKS-LRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAF 178 (349)
Q Consensus 101 ~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (349)
. |...|.+++|+ +..+.+|+.++.|..+|++..+.... +. +|...|..++|++
T Consensus 257 ~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~-~H~qeVCgLkws~---------------------- 311 (484)
T KOG0305|consen 257 GSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQ-GHRQEVCGLKWSP---------------------- 311 (484)
T ss_pred CCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhh-cccceeeeeEECC----------------------
Confidence 4 78899999998 67899999999999999997765544 67 8999999999999
Q ss_pred eEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeee
Q 018858 179 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDY 258 (349)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (349)
++++||+|+.|+.+.|||.... .+..
T Consensus 312 --------------d~~~lASGgnDN~~~Iwd~~~~----------------------------------------~p~~ 337 (484)
T KOG0305|consen 312 --------------DGNQLASGGNDNVVFIWDGLSP----------------------------------------EPKF 337 (484)
T ss_pred --------------CCCeeccCCCccceEeccCCCc----------------------------------------cccE
Confidence 8999999999999999999653 5667
Q ss_pred eecCCCcceEEEEEeeecCCccEEEEee--CCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEE
Q 018858 259 SVGGHTAAASCVAFSMFGERGKYLISGG--NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVV 336 (349)
Q Consensus 259 ~~~~h~~~i~~i~~~~~~~~~~~l~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 336 (349)
.+..|.+.|..++|+|+ ....||+|+ .|+.|++||..++ ..+ ....-...|.++.|++...+++.+
T Consensus 338 ~~~~H~aAVKA~awcP~--q~~lLAsGGGs~D~~i~fwn~~~g---------~~i-~~vdtgsQVcsL~Wsk~~kEi~st 405 (484)
T KOG0305|consen 338 TFTEHTAAVKALAWCPW--QSGLLATGGGSADRCIKFWNTNTG---------ARI-DSVDTGSQVCSLIWSKKYKELLST 405 (484)
T ss_pred EEeccceeeeEeeeCCC--ccCceEEcCCCcccEEEEEEcCCC---------cEe-cccccCCceeeEEEcCCCCEEEEe
Confidence 88899999999999984 556899876 7999999999987 333 334556789999999866555555
Q ss_pred ee-CCCeEEEeeCC
Q 018858 337 CD-TSKVVKVYSIS 349 (349)
Q Consensus 337 ~~-~dg~i~iw~~~ 349 (349)
-+ .++.|.||+.+
T Consensus 406 hG~s~n~i~lw~~p 419 (484)
T KOG0305|consen 406 HGYSENQITLWKYP 419 (484)
T ss_pred cCCCCCcEEEEecc
Confidence 54 67899999864
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.8e-27 Score=185.18 Aligned_cols=246 Identities=16% Similarity=0.155 Sum_probs=198.1
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCC-EEEEEeCCCeEE
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNE-DIIYVSSGKEVK 83 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~ 83 (349)
....+.+.-.++.|.++.|-.| |++|+.|+..|.|+|||..+...+..+.+|..+|..+.|+|.++ .+++|+.|+.++
T Consensus 58 ~~~~k~~srFk~~v~s~~fR~D-G~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k 136 (487)
T KOG0310|consen 58 RSVRKTFSRFKDVVYSVDFRSD-GRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVK 136 (487)
T ss_pred hhhhhhHHhhccceeEEEeecC-CeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEE
Confidence 3445556667789999999998 99999999999999999777666788899999999999999655 567788889999
Q ss_pred EEEccCCCcccceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCc-eEeceeccccccceeEEEEccCCCCC
Q 018858 84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQH-CLYKSLRAGHSSICSSVQFIPWKPWE 161 (349)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~ 161 (349)
+||+.+.. ....+.+|++.|.|.+|+|.. ..+++|+.||.|++||++.. ..+.++. |..+|..+.+.|
T Consensus 137 ~~d~s~a~---v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln--hg~pVe~vl~lp----- 206 (487)
T KOG0310|consen 137 YWDLSTAY---VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN--HGCPVESVLALP----- 206 (487)
T ss_pred EEEcCCcE---EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec--CCCceeeEEEcC-----
Confidence 99999753 345678899999999999965 58899999999999999966 6666776 899999999999
Q ss_pred CCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEE
Q 018858 162 GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA 241 (349)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (349)
.|..+++++. ..|++||+.++.........+...++++.+..++..|+
T Consensus 207 -------------------------------sgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLl 254 (487)
T KOG0310|consen 207 -------------------------------SGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLL 254 (487)
T ss_pred -------------------------------CCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEe
Confidence 7888888765 57999999976655555554677899999999998888
Q ss_pred EeeeeeecCc----eeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCC
Q 018858 242 EMEILDQSGG----KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR 298 (349)
Q Consensus 242 ~~~~~~~~~~----~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 298 (349)
+ ++.|+... ...+.++.+. ..++|.+++.+ |+++.++.|-.||.+.+=+...
T Consensus 255 S-~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs---~dd~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 255 S-GSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVS---PDDQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred e-cccccceEEEEccceEEEEeee-cccceeeEEec---CCCceEEEecccceeeeehhhc
Confidence 4 44444322 2344444443 46799999999 8999999999999988775444
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=201.11 Aligned_cols=248 Identities=14% Similarity=0.142 Sum_probs=197.1
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCC------------------CcEEEEeecCCCCeEEEEEe
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRS------------------KDVQLVTDVGNGPVTSLCFK 67 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~------------------~~~~~~~~~~~~~v~~~~~~ 67 (349)
+.+.+...|.+.|+|+.|+|| |++||+|+.|+.|.||.... .+.+..+.+|...|..++|+
T Consensus 60 k~l~~m~~h~~sv~CVR~S~d-G~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws 138 (942)
T KOG0973|consen 60 KHLCTMDDHDGSVNCVRFSPD-GSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS 138 (942)
T ss_pred hhheeeccccCceeEEEECCC-CCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC
Confidence 456777889999999999999 99999999999999999762 13567888999999999999
Q ss_pred cCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceecc----
Q 018858 68 SGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA---- 143 (349)
Q Consensus 68 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---- 143 (349)
|++.++++++.|++|.||+..+. ..+..+.+|...|..+.|.|-|+|||+-+.|++|++|++.+..+.+.+..
T Consensus 139 p~~~~lvS~s~DnsViiwn~~tF---~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~ 215 (942)
T KOG0973|consen 139 PDDSLLVSVSLDNSVIIWNAKTF---ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEE 215 (942)
T ss_pred CCccEEEEecccceEEEEccccc---eeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhh
Confidence 99999999999999999999875 56677788999999999999999999999999999999877655555441
Q ss_pred -ccccceeEEEEccCCCCCCCCCCC----------------CCCccccCCceeEEeecCcccccCCCC-----------c
Q 018858 144 -GHSSICSSVQFIPWKPWEGLPENN----------------GNAGQCYNPAFVHAIAIPDADMLDKTN-----------K 195 (349)
Q Consensus 144 -~~~~~v~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~ 195 (349)
.....+..+.|+|||.++.+...- ......-+...+..+.|+|-.|-.+.. .
T Consensus 216 ~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~ 295 (942)
T KOG0973|consen 216 SPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYC 295 (942)
T ss_pred CCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceE
Confidence 123357789999999988543211 111112234577888998877755444 2
Q ss_pred EEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeee
Q 018858 196 ICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMF 275 (349)
Q Consensus 196 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~ 275 (349)
.+|+|+.|+.|.||..... +++..++.+. ...|.++.|+
T Consensus 296 i~AvgSqDrSlSVW~T~~~-------------------------------------RPl~vi~~lf--~~SI~DmsWs-- 334 (942)
T KOG0973|consen 296 IAAVGSQDRSLSVWNTALP-------------------------------------RPLFVIHNLF--NKSIVDMSWS-- 334 (942)
T ss_pred EEEEecCCccEEEEecCCC-------------------------------------Cchhhhhhhh--cCceeeeeEc--
Confidence 7889999999999998652 1112223333 4579999999
Q ss_pred cCCccEEEEeeCCCeEEEEecCCC
Q 018858 276 GERGKYLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 276 ~~~~~~l~s~~~d~~i~vwd~~~~ 299 (349)
|||..|+.+|.||+|.+..++..
T Consensus 335 -pdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 335 -PDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred -CCCCeEEEEecCCeEEEEEcchH
Confidence 99999999999999999998764
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.3e-26 Score=193.53 Aligned_cols=248 Identities=18% Similarity=0.238 Sum_probs=200.6
Q ss_pred CCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC-cEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 018858 13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK-DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA 91 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 91 (349)
+|+..-+.++|.|+ |++|++++.||.|++|+.... +...++..+...|.+++.. +.+|++++.+++|.+|.+.+++
T Consensus 11 aht~G~t~i~~d~~-gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 11 AHTGGLTLICYDPD-GEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hccCceEEEEEcCC-CCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence 68888999999999 889999999999999997655 4444555477778877764 5589999999999999999876
Q ss_pred cccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCc
Q 018858 92 SWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAG 171 (349)
Q Consensus 92 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 171 (349)
....+..+ .-++++++++.+|+++|.|+.|-.|++.++.+......++ +|.++|.++.|+|
T Consensus 88 ~~~iL~Rf---tlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr-gh~apVl~l~~~p--------------- 148 (933)
T KOG1274|consen 88 EDTILARF---TLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR-GHDAPVLQLSYDP--------------- 148 (933)
T ss_pred ccceeeee---eccceEEEEecCCcEEEeecCceeEEEEeccccchheeec-ccCCceeeeeEcC---------------
Confidence 55555555 4679999999999999999999999999999888888999 9999999999999
Q ss_pred cccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCc
Q 018858 172 QCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG 251 (349)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (349)
++++||+.+.||.|++||+.++....++..-
T Consensus 149 ---------------------~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v---------------------------- 179 (933)
T KOG1274|consen 149 ---------------------KGNFLAVSSCDGKVQIWDLQDGILSKTLTGV---------------------------- 179 (933)
T ss_pred ---------------------CCCEEEEEecCceEEEEEcccchhhhhcccC----------------------------
Confidence 8999999999999999999976433322211
Q ss_pred eeeeeeeeecC-CCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecc--ccccceEEEEeec
Q 018858 252 KRLHLDYSVGG-HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI--NLNKKVNWLCTTP 328 (349)
Q Consensus 252 ~~~~~~~~~~~-h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~ 328 (349)
...... ....+..++|+ |++..++..+.|+.|++|+..+.+ ....+. .+...+..++|+|
T Consensus 180 -----~k~n~~~~s~i~~~~aW~---Pk~g~la~~~~d~~Vkvy~r~~we---------~~f~Lr~~~~ss~~~~~~wsP 242 (933)
T KOG1274|consen 180 -----DKDNEFILSRICTRLAWH---PKGGTLAVPPVDNTVKVYSRKGWE---------LQFKLRDKLSSSKFSDLQWSP 242 (933)
T ss_pred -----Cccccccccceeeeeeec---CCCCeEEeeccCCeEEEEccCCce---------eheeecccccccceEEEEEcC
Confidence 000000 13467788999 888888888889999999999984 222222 2444588999988
Q ss_pred CCCCcEEEeeCCCeEEEeeCC
Q 018858 329 TESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 329 ~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.|+|||+++.||.|.|||+.
T Consensus 243 -nG~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 243 -NGKYIAASTLDGQILVWNVD 262 (933)
T ss_pred -CCcEEeeeccCCcEEEEecc
Confidence 79999999999999999973
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-26 Score=187.49 Aligned_cols=255 Identities=16% Similarity=0.164 Sum_probs=186.1
Q ss_pred CeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEE--eecCCCCeEEEEEecC-CCEEEEEeCCCeEEE
Q 018858 8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLV--TDVGNGPVTSLCFKSG-NEDIIYVSSGKEVKS 84 (349)
Q Consensus 8 ~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i 84 (349)
++.+..|.+.|..+.|-|. ...|++++.|.++++||++..+++.. +.+|...|.+++|.|. ...+++|+.||.|.|
T Consensus 93 lk~~~aH~nAifDl~wapg-e~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~ill 171 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPG-ESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILL 171 (720)
T ss_pred hcccccccceeEeeccCCC-ceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEE
Confidence 4566789999999999994 88999999999999999999888655 8899999999999995 456889999999999
Q ss_pred EEccCCC--------------------ccc----ceeeccCcccceEE---EEEccCCCEEEEEcC-CCcEEEEEcCCce
Q 018858 85 FDVHMPA--------------------SWR----PLESYNYNKEEINQ---IVCNPKSSFLACADD-GGDVKIIDIRQHC 136 (349)
Q Consensus 85 wd~~~~~--------------------~~~----~~~~~~~~~~~v~~---~~~~~~~~~l~~~~~-dg~i~i~d~~~~~ 136 (349)
||++... ..+ .+....++...+.. +.+..|+..||+++. |+.|+|||++...
T Consensus 172 WD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~ 251 (720)
T KOG0321|consen 172 WDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNY 251 (720)
T ss_pred EEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccc
Confidence 9986432 000 01111122233333 444567888998887 9999999999654
Q ss_pred Eeceecc-------cc---ccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeE
Q 018858 137 LYKSLRA-------GH---SSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVV 206 (349)
Q Consensus 137 ~~~~~~~-------~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 206 (349)
....... .+ ...+.++.... .|.+|++.+.|+.|
T Consensus 252 ~~~r~ep~~~~~~~t~skrs~G~~nL~lDs------------------------------------sGt~L~AsCtD~sI 295 (720)
T KOG0321|consen 252 TAYRQEPRGSDKYPTHSKRSVGQVNLILDS------------------------------------SGTYLFASCTDNSI 295 (720)
T ss_pred cccccCCCcccCccCcccceeeeEEEEecC------------------------------------CCCeEEEEecCCcE
Confidence 3322110 11 11233333333 67888888889999
Q ss_pred EEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCc---ceEEEEEeeecCCccEEE
Q 018858 207 DVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTA---AASCVAFSMFGERGKYLI 283 (349)
Q Consensus 207 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~i~~i~~~~~~~~~~~l~ 283 (349)
++|++.+.. ..++..+.++.. .+.. ..+ |++.+++
T Consensus 296 y~ynm~s~s--------------------------------------~sP~~~~sg~~~~sf~vks-~lS---pd~~~l~ 333 (720)
T KOG0321|consen 296 YFYNMRSLS--------------------------------------ISPVAEFSGKLNSSFYVKS-ELS---PDDCSLL 333 (720)
T ss_pred EEEeccccC--------------------------------------cCchhhccCcccceeeeee-ecC---CCCceEe
Confidence 999998621 122233333321 2222 235 8999999
Q ss_pred EeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 284 SGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 284 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
+|+.|...++|.+.+.+ .....+.+|.-.|++++|.|..-.-+++|++|..++||++.
T Consensus 334 SgSsd~~ayiw~vs~~e--------~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 334 SGSSDEQAYIWVVSSPE--------APPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLS 391 (720)
T ss_pred ccCCCcceeeeeecCcc--------CChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEecc
Confidence 99999999999999975 44567789999999999999766679999999999999973
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-26 Score=184.95 Aligned_cols=288 Identities=14% Similarity=0.152 Sum_probs=211.9
Q ss_pred CCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCE--EEEEeCCCeEEE
Q 018858 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNED--IIYVSSGKEVKS 84 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~dg~i~i 84 (349)
+-..++||++.|.|+...|. |..|++|+.||+++||.+.++.++.++. ..+.|.+++|+|.++. ||++. ...+.|
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~-G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~-~~~~~i 468 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPS-GEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAV-GECVLI 468 (733)
T ss_pred eeeeEeccCCeEEEEEecCC-cceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEe-cCceEE
Confidence 44567899999999999998 9999999999999999999999999888 4568999999997664 34333 333444
Q ss_pred EEccCCC---------------------------------c-ccceeeccCcccceEEEEEccCCCEEEEEcCC---CcE
Q 018858 85 FDVHMPA---------------------------------S-WRPLESYNYNKEEINQIVCNPKSSFLACADDG---GDV 127 (349)
Q Consensus 85 wd~~~~~---------------------------------~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i 127 (349)
.+..-|. . ..-+...-.|...|..+.|+..|.||++...+ ..|
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V 548 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV 548 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence 4322110 0 00011122355788999999999999987654 459
Q ss_pred EEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCC------CCCc-----cccCCceeEEeecCcccccCCCCcE
Q 018858 128 KIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENN------GNAG-----QCYNPAFVHAIAIPDADMLDKTNKI 196 (349)
Q Consensus 128 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (349)
.|+++...+...-|+ ...+.+.++.|+|...++....+. .... .......+.+++++| .|..
T Consensus 549 liHQLSK~~sQ~PF~-kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp------~GDn 621 (733)
T KOG0650|consen 549 LIHQLSKRKSQSPFR-KSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHP------NGDN 621 (733)
T ss_pred EEEecccccccCchh-hcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecC------CCCe
Confidence 999998776666665 567789999999976655322222 1111 112345788889988 8999
Q ss_pred EEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeec
Q 018858 197 CVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFG 276 (349)
Q Consensus 197 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~ 276 (349)
|+.|+.|+.+..||+.-.. ++.+++.-|...+++++|+
T Consensus 622 li~gs~d~k~~WfDldlss---------------------------------------kPyk~lr~H~~avr~Va~H--- 659 (733)
T KOG0650|consen 622 LILGSYDKKMCWFDLDLSS---------------------------------------KPYKTLRLHEKAVRSVAFH--- 659 (733)
T ss_pred EEEecCCCeeEEEEcccCc---------------------------------------chhHHhhhhhhhhhhhhhc---
Confidence 9999999999999998531 5677888899999999999
Q ss_pred CCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccc----eEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 277 ERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKK----VNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 277 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
+.-.++++|+.||++.|+.-.-........--..+..+.+|... |....|+|.. -+|++++.||+|++|.
T Consensus 660 ~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~q-pWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 660 KRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQ-PWLFSAGADGTIRLFT 733 (733)
T ss_pred cccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCC-ceEEecCCCceEEeeC
Confidence 78889999999999999964432221111111345667777765 8888999954 4999999999999993
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.9e-26 Score=187.33 Aligned_cols=335 Identities=14% Similarity=0.079 Sum_probs=236.6
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCC--ceEEEeCCCCcEEEEECCCCc---------------------EEEE-------
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRP--GFVASSGEDGCICWFDLRSKD---------------------VQLV------- 53 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~--~~l~t~~~dg~i~vwd~~~~~---------------------~~~~------- 53 (349)
+...+..|.||.+.|.+++|...++ -+|++++.|..|+||.+.-+. ....
T Consensus 180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ 259 (764)
T KOG1063|consen 180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISF 259 (764)
T ss_pred ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEeh
Confidence 3467889999999999999987533 478999999999999864221 1111
Q ss_pred ---eecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCccc----ceeeccCcccceEEEEEccCCCEEEEEcCCCc
Q 018858 54 ---TDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWR----PLESYNYNKEEINQIVCNPKSSFLACADDGGD 126 (349)
Q Consensus 54 ---~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 126 (349)
+.+|..-|.++.|+|.+..|++++.|.++.+|...+..-+. .+....+.........|+|+++.+++-+..|.
T Consensus 260 eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg 339 (764)
T KOG1063|consen 260 EALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGG 339 (764)
T ss_pred hhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCc
Confidence 23799999999999999999999999999999876532111 12223333456788999999999999999999
Q ss_pred EEEEEcCCc---eEeceeccccccceeEEEEccCCCCCCC--CCCCCC---------CccccCCceeEEeecCcccccCC
Q 018858 127 VKIIDIRQH---CLYKSLRAGHSSICSSVQFIPWKPWEGL--PENNGN---------AGQCYNPAFVHAIAIPDADMLDK 192 (349)
Q Consensus 127 i~i~d~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 192 (349)
.++|-.++. .....+. +|.+.|..++|.|.|.++.+ .|++.. .-..+...++|.-++..+.|+.
T Consensus 340 ~hlWkt~d~~~w~~~~~iS-GH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn- 417 (764)
T KOG1063|consen 340 FHLWKTKDKTFWTQEPVIS-GHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVN- 417 (764)
T ss_pred EEEEeccCccceeeccccc-cccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehcc-
Confidence 999984332 2333445 89999999999999988743 444411 1122333455444444444432
Q ss_pred CCcEEEEEcCCCeEEEEEccCce-----------------e-------------eeec----------------------
Q 018858 193 TNKICVVAKGDGVVDVINIESEL-----------------N-------------ISRS---------------------- 220 (349)
Q Consensus 193 ~~~~l~~~~~dg~i~i~d~~~~~-----------------~-------------~~~~---------------------- 220 (349)
....|++|..+..+|+|+....- . ....
T Consensus 418 ~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p 497 (764)
T KOG1063|consen 418 EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAP 497 (764)
T ss_pred CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCc
Confidence 25678888888999999874310 0 0000
Q ss_pred ----CC-------------------CCCCccceeeeeccccEEEEeeeeee--------cCceeeeeeeeecCCCcceEE
Q 018858 221 ----KS-------------------TTKPLKGSQSTSKVNIRDAEMEILDQ--------SGGKRLHLDYSVGGHTAAASC 269 (349)
Q Consensus 221 ----~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~h~~~i~~ 269 (349)
.+ .+...+.+++.+|+|+.+|++-.... +....+.....+.+|.-.|+.
T Consensus 498 ~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~ 577 (764)
T KOG1063|consen 498 CELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTR 577 (764)
T ss_pred hhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEE
Confidence 00 01234567889999999986322111 111233445578899999999
Q ss_pred EEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 270 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 270 i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
++|+ |||+||++.+.|+++.+|......... ........|..-|.+..|+| ++.+++|+|.|.+|++|..+
T Consensus 578 l~FS---pdg~~LLsvsRDRt~sl~~~~~~~~~e-----~~fa~~k~HtRIIWdcsW~p-de~~FaTaSRDK~VkVW~~~ 648 (764)
T KOG1063|consen 578 LAFS---PDGRYLLSVSRDRTVSLYEVQEDIKDE-----FRFACLKAHTRIIWDCSWSP-DEKYFATASRDKKVKVWEEP 648 (764)
T ss_pred EEEC---CCCcEEEEeecCceEEeeeeecccchh-----hhhccccccceEEEEcccCc-ccceeEEecCCceEEEEecc
Confidence 9999 999999999999999999986542111 11233667999999999988 88899999999999999863
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-26 Score=170.05 Aligned_cols=263 Identities=14% Similarity=0.151 Sum_probs=202.4
Q ss_pred CeeeeCCceeeeEEEEecCCCceEEEeCCC-------CcEEEEECCCCc---------EEEEee-cCCCCeEEEEEecCC
Q 018858 8 PRRLRGHKATATCCIASRDRPGFVASSGED-------GCICWFDLRSKD---------VQLVTD-VGNGPVTSLCFKSGN 70 (349)
Q Consensus 8 ~~~l~~h~~~i~~~~~~~~~~~~l~t~~~d-------g~i~vwd~~~~~---------~~~~~~-~~~~~v~~~~~~~~~ 70 (349)
.+.|..|.+.|+.++-+|.+..+|+|+..+ ..+.||.+.... ++..+. .+-+.|.|+.|.|++
T Consensus 56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns 135 (370)
T KOG1007|consen 56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS 135 (370)
T ss_pred hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence 345677889999999999878888887653 246799986432 233343 344689999999999
Q ss_pred CEEEEEeCCCeEEEEEccCCCcc-ccee--eccCcccceEEEEEcc--CCCEEEEEcCCCcEEEEEcCCceEeceecccc
Q 018858 71 EDIIYVSSGKEVKSFDVHMPASW-RPLE--SYNYNKEEINQIVCNP--KSSFLACADDGGDVKIIDIRQHCLYKSLRAGH 145 (349)
Q Consensus 71 ~~l~~~~~dg~i~iwd~~~~~~~-~~~~--~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 145 (349)
..+++-. |..|.+|++..+... ..+. .-..+....++-+|+| +++.+++. .|+++..||+++.++...+...|
T Consensus 136 ~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAH 213 (370)
T KOG1007|consen 136 DKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAH 213 (370)
T ss_pred CeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhh
Confidence 9988777 888999999876442 1111 1122345678889998 67777765 46899999999988877777688
Q ss_pred ccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCC
Q 018858 146 SSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK 225 (349)
Q Consensus 146 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 225 (349)
...+..+.|+|+ ...+|++++.||.|++||.++.+
T Consensus 214 gq~vrdlDfNpn-----------------------------------kq~~lvt~gDdgyvriWD~R~tk---------- 248 (370)
T KOG1007|consen 214 GQRVRDLDFNPN-----------------------------------KQHILVTCGDDGYVRIWDTRKTK---------- 248 (370)
T ss_pred cceeeeccCCCC-----------------------------------ceEEEEEcCCCccEEEEeccCCC----------
Confidence 889999999995 56788999999999999999742
Q ss_pred CccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceec-
Q 018858 226 PLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT- 304 (349)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~- 304 (349)
.++..+.+|...|.++.|+| ...+++++||.|..|.+|...+-...+.
T Consensus 249 -----------------------------~pv~el~~HsHWvW~VRfn~--~hdqLiLs~~SDs~V~Lsca~svSSE~qi 297 (370)
T KOG1007|consen 249 -----------------------------FPVQELPGHSHWVWAVRFNP--EHDQLILSGGSDSAVNLSCASSVSSEQQI 297 (370)
T ss_pred -----------------------------ccccccCCCceEEEEEEecC--ccceEEEecCCCceeEEEecccccccccc
Confidence 67788999999999999997 4567999999999999998765331111
Q ss_pred --------------c-----cccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 305 --------------S-----INNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 305 --------------~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
. -....+..+..|.+.|++++|++.|+-.+++-+.||.+.|=++
T Consensus 298 ~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 298 EFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred ccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 0 0123445777899999999999999988999999999987554
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.5e-26 Score=171.27 Aligned_cols=248 Identities=15% Similarity=0.254 Sum_probs=184.6
Q ss_pred eeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCccccee
Q 018858 18 ATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLE 97 (349)
Q Consensus 18 i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 97 (349)
-.|+.|++. |.+||.|+.||.+.|||+.+...-..+.+|..+|++++||++|+.|++++.|..|.+||+..+...+.+.
T Consensus 26 a~~~~Fs~~-G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRW-GDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred cceEEeccC-cceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE
Confidence 788999998 9999999999999999999988888899999999999999999999999999999999998775332221
Q ss_pred ec------cCcc-------------------------------------cceEEEEEccCCCEEEEEcCCCcEEEEEcCC
Q 018858 98 SY------NYNK-------------------------------------EEINQIVCNPKSSFLACADDGGDVKIIDIRQ 134 (349)
Q Consensus 98 ~~------~~~~-------------------------------------~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 134 (349)
-- +-|. ....+..|.+.|+++++|...|.+.++|..+
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t 184 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET 184 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence 10 0000 0011223556677999999999999999999
Q ss_pred ceEeceeccccc-cceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC
Q 018858 135 HCLYKSLRAGHS-SICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 213 (349)
Q Consensus 135 ~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 213 (349)
.+++..++ -.. ..|..+.|+. .|+.|+.-+.|..||.|+++.
T Consensus 185 ~e~vas~r-its~~~IK~I~~s~------------------------------------~g~~liiNtsDRvIR~ye~~d 227 (405)
T KOG1273|consen 185 LECVASFR-ITSVQAIKQIIVSR------------------------------------KGRFLIINTSDRVIRTYEISD 227 (405)
T ss_pred heeeeeee-echheeeeEEEEec------------------------------------cCcEEEEecCCceEEEEehhh
Confidence 88888887 333 5677777776 899999999999999999984
Q ss_pred ceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecC--CCcceEEEEEeeecCCccEEEEee-CCCe
Q 018858 214 ELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGG--HTAAASCVAFSMFGERGKYLISGG-NDKL 290 (349)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~i~~i~~~~~~~~~~~l~s~~-~d~~ 290 (349)
-..... ....++.+.++. .+..-.++.|+ .+|.|+++++ .-..
T Consensus 228 i~~~~r-------------------------------~~e~e~~~K~qDvVNk~~Wk~ccfs---~dgeYv~a~s~~aHa 273 (405)
T KOG1273|consen 228 IDDEGR-------------------------------DGEVEPEHKLQDVVNKLQWKKCCFS---GDGEYVCAGSARAHA 273 (405)
T ss_pred hcccCc-------------------------------cCCcChhHHHHHHHhhhhhhheeec---CCccEEEecccccee
Confidence 100000 001122233332 12334677788 8999998876 4578
Q ss_pred EEEEecCCCcceecccccceeeeccccc-cceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 291 VKVWDCSRFQGVQTSINNDLLIKNINLN-KKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 291 i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
++||.-..+ .+++.+.+.+ .....+.|+|-.. .+++. ..|.++||..
T Consensus 274 LYIWE~~~G---------sLVKILhG~kgE~l~DV~whp~rp-~i~si-~sg~v~iw~~ 321 (405)
T KOG1273|consen 274 LYIWEKSIG---------SLVKILHGTKGEELLDVNWHPVRP-IIASI-ASGVVYIWAV 321 (405)
T ss_pred EEEEecCCc---------ceeeeecCCchhheeeccccccee-eeeec-cCCceEEEEe
Confidence 999999998 7777777766 5677889988432 45554 7899999974
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-26 Score=172.04 Aligned_cols=218 Identities=19% Similarity=0.270 Sum_probs=173.0
Q ss_pred eecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEEccCCCccc------------ceeeccCcccceEEEEEcc-CCCEEE
Q 018858 54 TDVGNGPVTSLCFKS-GNEDIIYVSSGKEVKSFDVHMPASWR------------PLESYNYNKEEINQIVCNP-KSSFLA 119 (349)
Q Consensus 54 ~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~------------~~~~~~~~~~~v~~~~~~~-~~~~l~ 119 (349)
...|.+.|.++.+.+ .|+++++|+.||.|.+||++.....+ ....-.+|+-.|..+.|-| |...|.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 345889999999977 78999999999999999998643111 0111245677899999999 557888
Q ss_pred EEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEE
Q 018858 120 CADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV 199 (349)
Q Consensus 120 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (349)
+++-|..+++||..+-+..-.|+ .++.|++-+++| +++ ...++|+
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~--me~~VYshamSp------------------------------~a~---sHcLiA~ 163 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFK--MEGKVYSHAMSP------------------------------MAM---SHCLIAA 163 (397)
T ss_pred cccccceEEEeecccceeeEEee--cCceeehhhcCh------------------------------hhh---cceEEEE
Confidence 99999999999999888877777 667788877777 111 4567888
Q ss_pred EcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCc
Q 018858 200 AKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERG 279 (349)
Q Consensus 200 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~ 279 (349)
|..+-.|++.|+.++ ...+++.+|.+.|.++.|+| ...
T Consensus 164 gtr~~~VrLCDi~SG----------------------------------------s~sH~LsGHr~~vlaV~Wsp--~~e 201 (397)
T KOG4283|consen 164 GTRDVQVRLCDIASG----------------------------------------SFSHTLSGHRDGVLAVEWSP--SSE 201 (397)
T ss_pred ecCCCcEEEEeccCC----------------------------------------cceeeeccccCceEEEEecc--Cce
Confidence 999999999999986 66788999999999999995 344
Q ss_pred cEEEEeeCCCeEEEEecCCCccee-c-----ccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 280 KYLISGGNDKLVKVWDCSRFQGVQ-T-----SINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 280 ~~l~s~~~d~~i~vwd~~~~~~~~-~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
-.|++|+.||.|++||++...... . ....+.++.-..|.+.++.+||.+ ++.++++++.|..+++|+++
T Consensus 202 ~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS-d~~~l~~~gtd~r~r~wn~~ 276 (397)
T KOG4283|consen 202 WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS-DARYLASCGTDDRIRVWNME 276 (397)
T ss_pred eEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc-cchhhhhccCccceEEeecc
Confidence 567899999999999998763211 1 122244455678999999999988 89999999999999999864
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.7e-26 Score=178.61 Aligned_cols=236 Identities=13% Similarity=0.119 Sum_probs=183.9
Q ss_pred eEEEeC-CCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEE
Q 018858 30 FVASSG-EDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQ 108 (349)
Q Consensus 30 ~l~t~~-~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 108 (349)
+++++. ....|.+|.+...........-.++|.+++-+|+|.+++.|+..|.|++|.+.+|.. +..+.+|-..|+|
T Consensus 52 yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~L---L~v~~aHYQ~ITc 128 (476)
T KOG0646|consen 52 YLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGIL---LNVLSAHYQSITC 128 (476)
T ss_pred heeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccH---HHHHHhhccceeE
Confidence 444433 334678888765554332223457899999999999999998999999999998854 4555678899999
Q ss_pred EEEccCCCEEEEEcCCCcEEEEEcC---------CceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCcee
Q 018858 109 IVCNPKSSFLACADDGGDVKIIDIR---------QHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFV 179 (349)
Q Consensus 109 ~~~~~~~~~l~~~~~dg~i~i~d~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (349)
+.|+.|+.+|++|+.||.|.+|++. +.+++..+. .|.-+|+++...+.+
T Consensus 129 L~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~-~HtlsITDl~ig~Gg--------------------- 186 (476)
T KOG0646|consen 129 LKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFS-DHTLSITDLQIGSGG--------------------- 186 (476)
T ss_pred EEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeec-cCcceeEEEEecCCC---------------------
Confidence 9999999999999999999999874 235666777 888889988877621
Q ss_pred EEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeee
Q 018858 180 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYS 259 (349)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (349)
....+++++.|.++++||+..+ .++.+
T Consensus 187 -------------~~~rl~TaS~D~t~k~wdlS~g----------------------------------------~LLlt 213 (476)
T KOG0646|consen 187 -------------TNARLYTASEDRTIKLWDLSLG----------------------------------------VLLLT 213 (476)
T ss_pred -------------ccceEEEecCCceEEEEEeccc----------------------------------------eeeEE
Confidence 3467999999999999999975 22223
Q ss_pred ecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCccee-------cccccceeeecccccc--ceEEEEeecCC
Q 018858 260 VGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ-------TSINNDLLIKNINLNK--KVNWLCTTPTE 330 (349)
Q Consensus 260 ~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~-------~~~~~~~~~~~~~~~~--~v~~~~~~~~~ 330 (349)
+. ....+.+++++ |-++.++.|+++|.|.+.++....... .......+..+.+|.+ .|++++++- |
T Consensus 214 i~-fp~si~av~lD---pae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~-D 288 (476)
T KOG0646|consen 214 IT-FPSSIKAVALD---PAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST-D 288 (476)
T ss_pred Ee-cCCcceeEEEc---ccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec-C
Confidence 22 24678999999 889999999999999999887644111 1122345567788988 999999976 9
Q ss_pred CCcEEEeeCCCeEEEeeC
Q 018858 331 SENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 331 ~~~l~~~~~dg~i~iw~~ 348 (349)
|.+|++|+.||+|+|||+
T Consensus 289 gtlLlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 289 GTLLLSGDEDGKVCVWDI 306 (476)
T ss_pred ccEEEeeCCCCCEEEEec
Confidence 999999999999999996
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-24 Score=173.40 Aligned_cols=316 Identities=12% Similarity=0.051 Sum_probs=222.5
Q ss_pred CCeeeeCCceeeeEEEEecCC-CceEEEe--CCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 018858 7 KPRRLRGHKATATCCIASRDR-PGFVASS--GEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK 83 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~-~~~l~t~--~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 83 (349)
.++.|......|.|++|++.+ +.++..- +.+..+.+||.+.+......+..++.|....|+|....++.....+.+.
T Consensus 146 TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~ 225 (626)
T KOG2106|consen 146 TLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLY 225 (626)
T ss_pred eeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEE
Confidence 344555667889999999854 4444443 4456789999998887777777888999999999666655555578899
Q ss_pred EEEccCCCcccceeeccCc-ccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCC
Q 018858 84 SFDVHMPASWRPLESYNYN-KEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEG 162 (349)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 162 (349)
.|+++.+...+....+..+ +..|.|++|.++++ +++|..+|.|.||+..+.+..+... .|++.|.+++...+|..+.
T Consensus 226 Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~GtllS 303 (626)
T KOG2106|consen 226 FWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRDGTLLS 303 (626)
T ss_pred EEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecCccEee
Confidence 9999987665555544433 35799999999886 7889999999999998888877777 8999999999888764441
Q ss_pred --------CCCCC----------------------------------CCCcccc---------CCceeEEeecCcccccC
Q 018858 163 --------LPENN----------------------------------GNAGQCY---------NPAFVHAIAIPDADMLD 191 (349)
Q Consensus 163 --------~~~~~----------------------------------~~~~~~~---------~~~~~~~~~~~~~~~~~ 191 (349)
..+.+ ...+... +......++..|
T Consensus 304 GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp----- 378 (626)
T KOG2106|consen 304 GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP----- 378 (626)
T ss_pred cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-----
Confidence 00000 0000000 112345566666
Q ss_pred CCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEE---eeeeeecCceeeeeeeeecCCCcceE
Q 018858 192 KTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE---MEILDQSGGKRLHLDYSVGGHTAAAS 268 (349)
Q Consensus 192 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~h~~~i~ 268 (349)
+.+.+++++.|+.+++|+-. +..- ......+..++.|+|.| .+++ .|.|-.........+..-.. ..+++
T Consensus 379 -s~~q~~T~gqdk~v~lW~~~--k~~w--t~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls 451 (626)
T KOG2106|consen 379 -SKNQLLTCGQDKHVRLWNDH--KLEW--TKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLS 451 (626)
T ss_pred -ChhheeeccCcceEEEccCC--ceeE--EEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceE
Confidence 78889999999999999922 2211 11223556788999999 5553 22222222222222222223 67899
Q ss_pred EEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 269 CVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 269 ~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
++.|+ |+|.+||.|+.|+.|+||-+..... .....-.-+..+|+.+.|++ |+++|.+-+.|-.|-.|.
T Consensus 452 ~v~ys---p~G~~lAvgs~d~~iyiy~Vs~~g~-------~y~r~~k~~gs~ithLDwS~-Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 452 VVRYS---PDGAFLAVGSHDNHIYIYRVSANGR-------KYSRVGKCSGSPITHLDWSS-DSQFLVSNSGDYEILYWK 519 (626)
T ss_pred EEEEc---CCCCEEEEecCCCeEEEEEECCCCc-------EEEEeeeecCceeEEeeecC-CCceEEeccCceEEEEEc
Confidence 99999 9999999999999999999987642 22222223448999999988 899999999999999994
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-26 Score=179.66 Aligned_cols=233 Identities=19% Similarity=0.234 Sum_probs=178.8
Q ss_pred CceEEEeCCCCcEEEEECCCCcE---EE------------------EeecCCCCeEEEEEecC-CCEEEEEeCCCeEEEE
Q 018858 28 PGFVASSGEDGCICWFDLRSKDV---QL------------------VTDVGNGPVTSLCFKSG-NEDIIYVSSGKEVKSF 85 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~~---~~------------------~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iw 85 (349)
|+++|.|..|..|.|||+.-... .. .-.+|+..|..++|+.. .+.||+||.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 68999999999999999863211 11 12358888888988764 4568999999999999
Q ss_pred EccCCCcccceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCce-EeceeccccccceeEEEEccCCCCCCC
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHC-LYKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
|+.+++... .+..|...|.++.|+|.. .+|++|+.|++|.+.|+|... .-..++ ..+.|..++|.|.
T Consensus 272 D~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk--~~g~VEkv~w~~~------ 340 (463)
T KOG0270|consen 272 DVDTGKPKS---SITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK--FDGEVEKVAWDPH------ 340 (463)
T ss_pred EcCCCCcce---ehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE--eccceEEEEecCC------
Confidence 999886544 444578999999999965 789999999999999999532 223343 5678999999985
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
....+++++.||+|+-+|+|+.
T Consensus 341 -----------------------------se~~f~~~tddG~v~~~D~R~~----------------------------- 362 (463)
T KOG0270|consen 341 -----------------------------SENSFFVSTDDGTVYYFDIRNP----------------------------- 362 (463)
T ss_pred -----------------------------CceeEEEecCCceEEeeecCCC-----------------------------
Confidence 5678889999999999999973
Q ss_pred eeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEE
Q 018858 244 EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNW 323 (349)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 323 (349)
.+++.+++.|.+.|.+|.+++ ....++++++.|+.|++|++..... .......-.-+...|
T Consensus 363 ----------~~~vwt~~AHd~~ISgl~~n~--~~p~~l~t~s~d~~Vklw~~~~~~~-------~~v~~~~~~~~rl~c 423 (463)
T KOG0270|consen 363 ----------GKPVWTLKAHDDEISGLSVNI--QTPGLLSTASTDKVVKLWKFDVDSP-------KSVKEHSFKLGRLHC 423 (463)
T ss_pred ----------CCceeEEEeccCCcceEEecC--CCCcceeeccccceEEEEeecCCCC-------cccccccccccceee
Confidence 167788999999999999986 3445899999999999999986532 111111111223556
Q ss_pred EEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 324 LCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 324 ~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.++.|....+++.|+..+.++|||+
T Consensus 424 ~~~~~~~a~~la~GG~k~~~~vwd~ 448 (463)
T KOG0270|consen 424 FALDPDVAFTLAFGGEKAVLRVWDI 448 (463)
T ss_pred cccCCCcceEEEecCccceEEEeec
Confidence 6777766668899999999999996
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-26 Score=166.53 Aligned_cols=220 Identities=17% Similarity=0.184 Sum_probs=174.8
Q ss_pred CCCeeeeCCceeeeEEEEe-cCCCceEEEeCCCCcEEEEECCCCcE--EEEeecCCCCeEEEEEecC--CCEEEEEeCCC
Q 018858 6 AKPRRLRGHKATATCCIAS-RDRPGFVASSGEDGCICWFDLRSKDV--QLVTDVGNGPVTSLCFKSG--NEDIIYVSSGK 80 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~-~~~~~~l~t~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg 80 (349)
+++.+|.||+++|+.++|. |.-|.+||+++.||.+.||..+.++- ......|...|++++|.|. |-.|++++.||
T Consensus 47 ~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG 126 (299)
T KOG1332|consen 47 KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDG 126 (299)
T ss_pred eeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCC
Confidence 6788999999999999995 44489999999999999999887753 4556679999999999884 56789999999
Q ss_pred eEEEEEccCCCcccceeeccCcccceEEEEEccC---C-----------CEEEEEcCCCcEEEEEcCCce--Eeceeccc
Q 018858 81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK---S-----------SFLACADDGGDVKIIDIRQHC--LYKSLRAG 144 (349)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~-----------~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~ 144 (349)
.|.|.+.+.......-+...+|.-.|++++|.|. | +.|++|+.|..|+||+..+++ .-..+. +
T Consensus 127 ~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~-~ 205 (299)
T KOG1332|consen 127 KVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLE-G 205 (299)
T ss_pred cEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhh-h
Confidence 9999999865333444556778899999999986 4 569999999999999988653 334577 8
Q ss_pred cccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCC
Q 018858 145 HSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTT 224 (349)
Q Consensus 145 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 224 (349)
|.+-|+.++|.|.-.. ...++++++.||++.||..+...
T Consensus 206 H~dwVRDVAwaP~~gl--------------------------------~~s~iAS~SqDg~viIwt~~~e~--------- 244 (299)
T KOG1332|consen 206 HKDWVRDVAWAPSVGL--------------------------------PKSTIASCSQDGTVIIWTKDEEY--------- 244 (299)
T ss_pred cchhhhhhhhccccCC--------------------------------CceeeEEecCCCcEEEEEecCcc---------
Confidence 9999999999994100 24679999999999999887421
Q ss_pred CCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCC
Q 018858 225 KPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR 298 (349)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 298 (349)
.. .....+......+..+.|+ ..|++|+.++.|+.|.+|.-..
T Consensus 245 ---------------------------e~-wk~tll~~f~~~~w~vSWS---~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 245 ---------------------------EP-WKKTLLEEFPDVVWRVSWS---LSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred ---------------------------Cc-ccccccccCCcceEEEEEe---ccccEEEEecCCcEEEEEEeCC
Confidence 00 1111222345689999999 8999999999999999997554
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-25 Score=166.97 Aligned_cols=237 Identities=11% Similarity=0.084 Sum_probs=165.6
Q ss_pred cCCCCeEEEEEec-CCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCC
Q 018858 56 VGNGPVTSLCFKS-GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ 134 (349)
Q Consensus 56 ~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 134 (349)
.....|.+++||| ...++++++.|++|++|+++....... +....|.++|.+++|+.+|..+++|+.|+.+++||+.+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence 3567899999999 445566889999999999986322222 44556789999999999999999999999999999999
Q ss_pred ceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCc
Q 018858 135 HCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE 214 (349)
Q Consensus 135 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 214 (349)
++. .++. .|..+|.++.|-+. .....|++|+.|.+|++||.+..
T Consensus 104 ~Q~-~~v~-~Hd~pvkt~~wv~~----------------------------------~~~~cl~TGSWDKTlKfWD~R~~ 147 (347)
T KOG0647|consen 104 GQV-SQVA-AHDAPVKTCHWVPG----------------------------------MNYQCLVTGSWDKTLKFWDTRSS 147 (347)
T ss_pred CCe-eeee-ecccceeEEEEecC----------------------------------CCcceeEecccccceeecccCCC
Confidence 965 4455 69999999999872 13358999999999999999987
Q ss_pred eeeeecCCCCCCccc-----eeeeeccccEEEEeeeeeecCceeeeeeeeecC----CCcceEEEEEeeecCCccEEEEe
Q 018858 215 LNISRSKSTTKPLKG-----SQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGG----HTAAASCVAFSMFGERGKYLISG 285 (349)
Q Consensus 215 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----h~~~i~~i~~~~~~~~~~~l~s~ 285 (349)
........+...... -+...-.++.|++.... .....++. -+-.++++++. .|..-.+.|
T Consensus 148 ~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~--------n~~te~k~~~SpLk~Q~R~va~f---~d~~~~alG 216 (347)
T KOG0647|consen 148 NPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLE--------NPPTEFKRIESPLKWQTRCVACF---QDKDGFALG 216 (347)
T ss_pred CeeeeeeccceeeehhccCceeEEEecCCcEEEEEcC--------CCcchhhhhcCcccceeeEEEEE---ecCCceEee
Confidence 666655444321110 01111122222210000 00111111 12357888888 677777999
Q ss_pred eCCCeEEEEecCCCcceecccccceeeecccc---------ccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 286 GNDKLVKVWDCSRFQGVQTSINNDLLIKNINL---------NKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 286 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
+-+|.+.|..+..+... .-..+.-| -..|++++|+|..| .|+|+|.||++.+||-
T Consensus 217 siEGrv~iq~id~~~~~-------~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg-tlvTaGsDGtf~FWDk 280 (347)
T KOG0647|consen 217 SIEGRVAIQYIDDPNPK-------DNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG-TLVTAGSDGTFSFWDK 280 (347)
T ss_pred eecceEEEEecCCCCcc-------CceeEEEeccCCCCCCceEEecceEeecccc-eEEEecCCceEEEecc
Confidence 99999999999886321 11122222 23688999999555 8999999999999983
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=180.52 Aligned_cols=258 Identities=13% Similarity=0.083 Sum_probs=183.6
Q ss_pred CCccCCCCeeeeC-CceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEE------------EeecCCCCeEEEEEe
Q 018858 1 MTDAEAKPRRLRG-HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQL------------VTDVGNGPVTSLCFK 67 (349)
Q Consensus 1 m~~~~~~~~~l~~-h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~------------~~~~~~~~v~~~~~~ 67 (349)
|..++.-.+.|+. ....|.+++|++. +..|+..+.....+|+|-...+... ..++|...+++-+|+
T Consensus 199 Mdas~~~fr~l~P~E~h~i~sl~ys~T-g~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~wh 277 (641)
T KOG0772|consen 199 MDASMRSFRQLQPCETHQINSLQYSVT-GDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWH 277 (641)
T ss_pred ccccchhhhccCcccccccceeeecCC-CCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccc
Confidence 4455555555542 4457999999998 6666666666789999966433322 235788999999999
Q ss_pred cCC-CEEEEEeCCCeEEEEEccCCCc-ccceeec--cCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceE--ecee
Q 018858 68 SGN-EDIIYVSSGKEVKSFDVHMPAS-WRPLESY--NYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL--YKSL 141 (349)
Q Consensus 68 ~~~-~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~ 141 (349)
|.. +.+++++.||+++|||+...+. .+.+... .+..-.++..+|++++++||+|+.||.|.+|+..+... ...+
T Consensus 278 P~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~v 357 (641)
T KOG0772|consen 278 PDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKV 357 (641)
T ss_pred cCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEe
Confidence 955 4689999999999999986432 2223221 22334688999999999999999999999999864422 2222
Q ss_pred cccccc--ceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeee
Q 018858 142 RAGHSS--ICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISR 219 (349)
Q Consensus 142 ~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 219 (349)
+..|.. .|+|+.|++ +|++|++-+.|+++++||++....+..
T Consensus 358 k~AH~~g~~Itsi~FS~------------------------------------dg~~LlSRg~D~tLKvWDLrq~kkpL~ 401 (641)
T KOG0772|consen 358 KDAHLPGQDITSISFSY------------------------------------DGNYLLSRGFDDTLKVWDLRQFKKPLN 401 (641)
T ss_pred eeccCCCCceeEEEecc------------------------------------ccchhhhccCCCceeeeeccccccchh
Confidence 226666 899999999 899999999999999999998665543
Q ss_pred cCC--CCCCccceeeeeccccEEEEeeeeee---------cCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCC
Q 018858 220 SKS--TTKPLKGSQSTSKVNIRDAEMEILDQ---------SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND 288 (349)
Q Consensus 220 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d 288 (349)
... +.......++|||+.+.+++-.+... .....+..++.+.-....|..+.|+ |.-+.+..|+.|
T Consensus 402 ~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Wh---pkLNQi~~gsgd 478 (641)
T KOG0772|consen 402 VRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWH---PKLNQIFAGSGD 478 (641)
T ss_pred hhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeec---chhhheeeecCC
Confidence 332 33345567899999999986221111 1112334444444446678889999 787888888889
Q ss_pred CeEEEEecCC
Q 018858 289 KLVKVWDCSR 298 (349)
Q Consensus 289 ~~i~vwd~~~ 298 (349)
|+++||=-.+
T Consensus 479 G~~~vyYdp~ 488 (641)
T KOG0772|consen 479 GTAHVYYDPN 488 (641)
T ss_pred CceEEEECcc
Confidence 9999885444
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.1e-26 Score=175.66 Aligned_cols=211 Identities=17% Similarity=0.260 Sum_probs=167.9
Q ss_pred cCCCCeEEEEEecCCC--EEEEEeCCCeEEEEEccCC-------------CcccceeeccCcccceEEEEEccCC-CEEE
Q 018858 56 VGNGPVTSLCFKSGNE--DIIYVSSGKEVKSFDVHMP-------------ASWRPLESYNYNKEEINQIVCNPKS-SFLA 119 (349)
Q Consensus 56 ~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~-------------~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~ 119 (349)
.|.+.+..+.-++-++ +.++-+..|.|+||++... ...+++.++.+|...-+.++|+|-. ..++
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 4667777777776554 4445567899999998531 2345667788888888999999933 4588
Q ss_pred EEcCCCcEEEEEcCCceE---eceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcE
Q 018858 120 CADDGGDVKIIDIRQHCL---YKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKI 196 (349)
Q Consensus 120 ~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (349)
+|.--+.|++|...++.- ...+. +|...|..++|+|. ....
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~-gH~~SVEDLqWSpt-----------------------------------E~~v 272 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFT-GHTKSVEDLQWSPT-----------------------------------EDGV 272 (440)
T ss_pred cCccccceEeeeeccCceeecCcccc-ccccchhhhccCCc-----------------------------------cCce
Confidence 888888999999887532 12345 79999999999995 6789
Q ss_pred EEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeec
Q 018858 197 CVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFG 276 (349)
Q Consensus 197 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~ 276 (349)
|++++.||.|+|||++.+.. ..++ ..+.|.+.|+.|.|+
T Consensus 273 faScS~DgsIrIWDiRs~~~-------------------------------------~~~~-~~kAh~sDVNVISWn--- 311 (440)
T KOG0302|consen 273 FASCSCDGSIRIWDIRSGPK-------------------------------------KAAV-STKAHNSDVNVISWN--- 311 (440)
T ss_pred EEeeecCceEEEEEecCCCc-------------------------------------ccee-EeeccCCceeeEEcc---
Confidence 99999999999999997421 0122 237899999999999
Q ss_pred CCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 277 ERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 277 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.+..+||+|+.||+++|||++..+.. .++..+..|..+|+++.|+|.+...|++++.|.+|.+|||+
T Consensus 312 r~~~lLasG~DdGt~~iwDLR~~~~~------~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 312 RREPLLASGGDDGTLSIWDLRQFKSG------QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred CCcceeeecCCCceEEEEEhhhccCC------CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 77779999999999999999986432 56778889999999999999888899999999999999985
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.7e-24 Score=175.59 Aligned_cols=280 Identities=15% Similarity=0.111 Sum_probs=217.7
Q ss_pred CceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcE-EEEeec-CCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 018858 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV-QLVTDV-GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA 91 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 91 (349)
-..+|+|++++.+ .+.||.+-.||.|.+|++...-. ...+.+ .+..|.+++|++ +..|++.+.+|.|.-||+.+.+
T Consensus 24 ~Ps~I~slA~s~k-S~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk 101 (691)
T KOG2048|consen 24 KPSEIVSLAYSHK-SNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLK 101 (691)
T ss_pred eccceEEEEEecc-CCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCc
Confidence 4578999999998 78899999999999999987543 344554 357899999995 5568888889999999999864
Q ss_pred cccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEec--eeccccccceeEEEEccCCCCCCCCCCCCC
Q 018858 92 SWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYK--SLRAGHSSICSSVQFIPWKPWEGLPENNGN 169 (349)
Q Consensus 92 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 169 (349)
. +..+....+.+++++.+|.+..++.|++||.++.++...++... .+. ...+.+.+++|+|
T Consensus 102 ~---~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~-rq~sRvLslsw~~------------- 164 (691)
T KOG2048|consen 102 Q---KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLM-RQKSRVLSLSWNP------------- 164 (691)
T ss_pred e---eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecc-cccceEEEEEecC-------------
Confidence 4 44444556899999999999999999999988888887776543 333 4568899999999
Q ss_pred CccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeec-------CCCCCCccceeeeeccccEEEE
Q 018858 170 AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS-------KSTTKPLKGSQSTSKVNIRDAE 242 (349)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 242 (349)
++..++.|+.||.|++||..++...... ......-+.++.+-.++..+..
T Consensus 165 -----------------------~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sg 221 (691)
T KOG2048|consen 165 -----------------------TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASG 221 (691)
T ss_pred -----------------------CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEe
Confidence 7888999999999999999988765511 1112334566777777777764
Q ss_pred --eeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccc
Q 018858 243 --MEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKK 320 (349)
Q Consensus 243 --~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (349)
.|...-+......++.....|.+.|.+++.+ +++.++++++.|+.|.-|...+..... ........|...
T Consensus 222 DS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~---~~~d~vfsaGvd~~ii~~~~~~~~~~w-----v~~~~r~~h~hd 293 (691)
T KOG2048|consen 222 DSAGTVTFWDSIFGTLIQSHSCHDADVLALAVA---DNEDRVFSAGVDPKIIQYSLTTNKSEW-----VINSRRDLHAHD 293 (691)
T ss_pred cCCceEEEEcccCcchhhhhhhhhcceeEEEEc---CCCCeEEEccCCCceEEEEecCCccce-----eeeccccCCccc
Confidence 3444444555667778888899999999999 888999999999999999888764321 122334468889
Q ss_pred eEEEEeecCCCCcEEEeeCCCeEEEe
Q 018858 321 VNWLCTTPTESENLVVCDTSKVVKVY 346 (349)
Q Consensus 321 v~~~~~~~~~~~~l~~~~~dg~i~iw 346 (349)
|.+++..+. .|++|+.|..+.+=
T Consensus 294 vrs~av~~~---~l~sgG~d~~l~i~ 316 (691)
T KOG2048|consen 294 VRSMAVIEN---ALISGGRDFTLAIC 316 (691)
T ss_pred ceeeeeecc---eEEecceeeEEEEc
Confidence 999999763 89999999988763
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-27 Score=198.63 Aligned_cols=222 Identities=19% Similarity=0.313 Sum_probs=194.3
Q ss_pred ceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEE
Q 018858 29 GFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQ 108 (349)
Q Consensus 29 ~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 108 (349)
.+++....+-.+++||.+ .+-.|...|.++..-..++.+++|+.|..+.+|.+... ..+..+.+|..+|.+
T Consensus 5 ~~~m~~~~~t~Lr~~~~~------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp---~~i~S~~~hespIeS 75 (825)
T KOG0267|consen 5 EFLMKTKRATKLRVWDTR------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP---NAITSLTGHESPIES 75 (825)
T ss_pred cccceeeeeeccccccch------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCC---chhheeeccCCccee
Confidence 344455555667788754 33457888888888778889999999999999998753 344457889999999
Q ss_pred EEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCccc
Q 018858 109 IVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDAD 188 (349)
Q Consensus 109 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (349)
+.|++...+|++|+.+|.|++||++..+.++++. +|...+..+.|+|
T Consensus 76 l~f~~~E~LlaagsasgtiK~wDleeAk~vrtLt-gh~~~~~sv~f~P-------------------------------- 122 (825)
T KOG0267|consen 76 LTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLT-GHLLNITSVDFHP-------------------------------- 122 (825)
T ss_pred eecCcchhhhcccccCCceeeeehhhhhhhhhhh-ccccCcceeeecc--------------------------------
Confidence 9999999999999999999999999999999999 9999999999999
Q ss_pred ccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceE
Q 018858 189 MLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAAS 268 (349)
Q Consensus 189 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 268 (349)
-+.+++.|+.|+.+.+||++.. .+.+.+.+|...+.
T Consensus 123 ----~~~~~a~gStdtd~~iwD~Rk~----------------------------------------Gc~~~~~s~~~vv~ 158 (825)
T KOG0267|consen 123 ----YGEFFASGSTDTDLKIWDIRKK----------------------------------------GCSHTYKSHTRVVD 158 (825)
T ss_pred ----ceEEeccccccccceehhhhcc----------------------------------------CceeeecCCcceeE
Confidence 7889999999999999999953 67788899999999
Q ss_pred EEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 269 CVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 269 ~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.+.|+ |+|++++++++|..++|||...+ +++..+..|.+.+..+.++|. .-++++|+.|+++++||+
T Consensus 159 ~l~ls---P~Gr~v~~g~ed~tvki~d~~ag---------k~~~ef~~~e~~v~sle~hp~-e~Lla~Gs~d~tv~f~dl 225 (825)
T KOG0267|consen 159 VLRLS---PDGRWVASGGEDNTVKIWDLTAG---------KLSKEFKSHEGKVQSLEFHPL-EVLLAPGSSDRTVRFWDL 225 (825)
T ss_pred EEeec---CCCceeeccCCcceeeeeccccc---------ccccccccccccccccccCch-hhhhccCCCCceeeeecc
Confidence 99999 99999999999999999999998 788899999999999999994 458999999999999998
Q ss_pred C
Q 018858 349 S 349 (349)
Q Consensus 349 ~ 349 (349)
+
T Consensus 226 e 226 (825)
T KOG0267|consen 226 E 226 (825)
T ss_pred c
Confidence 5
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.7e-24 Score=174.04 Aligned_cols=262 Identities=14% Similarity=0.131 Sum_probs=183.3
Q ss_pred ceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEE-EEEeCCCeEEEEEccCCCcccceeeccCcccceE
Q 018858 29 GFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDI-IYVSSGKEVKSFDVHMPASWRPLESYNYNKEEIN 107 (349)
Q Consensus 29 ~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~ 107 (349)
+.+++++.|+.|++||+.+++.+..+..+. .+..++|+|+++.+ ++++.++.|++||..+++... .+..+ ..+.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~---~~~~~-~~~~ 76 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIG---TLPSG-PDPE 76 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEE---eccCC-CCcc
Confidence 578899999999999999999888887654 46789999999977 556778999999998764332 23222 3356
Q ss_pred EEEEccCCCEEEEE-cCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCc
Q 018858 108 QIVCNPKSSFLACA-DDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPD 186 (349)
Q Consensus 108 ~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (349)
.++|+|+++.++++ ..++.|++||+++.+.+..+. ....+.+++|+|
T Consensus 77 ~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~--~~~~~~~~~~~~------------------------------ 124 (300)
T TIGR03866 77 LFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP--VGVEPEGMAVSP------------------------------ 124 (300)
T ss_pred EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee--CCCCcceEEECC------------------------------
Confidence 78999999877654 568999999999888777665 334467889998
Q ss_pred ccccCCCCcEEEEEcCCC-eEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeec----Cceeeeeeeeec
Q 018858 187 ADMLDKTNKICVVAKGDG-VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS----GGKRLHLDYSVG 261 (349)
Q Consensus 187 ~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 261 (349)
++.+++++..++ .+.+||.++.+....... ......++|+++++.+++.+..+.. .....+....+.
T Consensus 125 ------dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~ 196 (300)
T TIGR03866 125 ------DGKIVVNTSETTNMAHFIDTKTYEIVDNVLV--DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKIT 196 (300)
T ss_pred ------CCCEEEEEecCCCeEEEEeCCCCeEEEEEEc--CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeee
Confidence 788888887765 567789887655443221 2345678999999988654322221 111222222222
Q ss_pred CC-----C--cceEEEEEeeecCCccEEEE-eeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCc
Q 018858 262 GH-----T--AAASCVAFSMFGERGKYLIS-GGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESEN 333 (349)
Q Consensus 262 ~h-----~--~~i~~i~~~~~~~~~~~l~s-~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 333 (349)
.+ . .....+.|+ |++++++. .+.++.+.+||+.++ +..... .+...+.+++|+| ++++
T Consensus 197 ~~~~~~~~~~~~~~~i~~s---~dg~~~~~~~~~~~~i~v~d~~~~---------~~~~~~-~~~~~~~~~~~~~-~g~~ 262 (300)
T TIGR03866 197 FEIPGVHPEAVQPVGIKLT---KDGKTAFVALGPANRVAVVDAKTY---------EVLDYL-LVGQRVWQLAFTP-DEKY 262 (300)
T ss_pred ecccccccccCCccceEEC---CCCCEEEEEcCCCCeEEEEECCCC---------cEEEEE-EeCCCcceEEECC-CCCE
Confidence 11 1 123467888 89987544 455678999999876 333222 2345788999988 7878
Q ss_pred EEEe-eCCCeEEEeeCC
Q 018858 334 LVVC-DTSKVVKVYSIS 349 (349)
Q Consensus 334 l~~~-~~dg~i~iw~~~ 349 (349)
|+++ +.+|.|++||+.
T Consensus 263 l~~~~~~~~~i~v~d~~ 279 (300)
T TIGR03866 263 LLTTNGVSNDVSVIDVA 279 (300)
T ss_pred EEEEcCCCCeEEEEECC
Confidence 8876 569999999974
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.3e-24 Score=169.78 Aligned_cols=282 Identities=13% Similarity=0.114 Sum_probs=210.8
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCC--cc
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA--SW 93 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~ 93 (349)
+.|.|++|.++ + -++||..+|.|.||+..+.+..+....|++.|.+++...+|.. ++|+.|+.|..||-.-.+ ..
T Consensus 247 k~Vl~v~F~en-g-dviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtl-lSGgKDRki~~Wd~~y~k~r~~ 323 (626)
T KOG2106|consen 247 KFVLCVTFLEN-G-DVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTL-LSGGKDRKIILWDDNYRKLRET 323 (626)
T ss_pred eEEEEEEEcCC-C-CEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccE-eecCccceEEeccccccccccc
Confidence 67999999997 4 5899999999999999887776666699999999999999875 459999999999832110 00
Q ss_pred ---------c-----------------c---------eeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEe
Q 018858 94 ---------R-----------------P---------LESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLY 138 (349)
Q Consensus 94 ---------~-----------------~---------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 138 (349)
+ . ....++|......++.+|+..++++++.|+.+++|+ ..++.
T Consensus 324 elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~ 401 (626)
T KOG2106|consen 324 ELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLE 401 (626)
T ss_pred cCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCcee
Confidence 0 0 001234556778889999999999999999999999 55555
Q ss_pred ceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeee
Q 018858 139 KSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS 218 (349)
Q Consensus 139 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 218 (349)
.+.. ...++.|+.|+| .| .++.|+..|...+.|.++...+.
T Consensus 402 wt~~--~~d~~~~~~fhp------------------------------------sg-~va~Gt~~G~w~V~d~e~~~lv~ 442 (626)
T KOG2106|consen 402 WTKI--IEDPAECADFHP------------------------------------SG-VVAVGTATGRWFVLDTETQDLVT 442 (626)
T ss_pred EEEE--ecCceeEeeccC------------------------------------cc-eEEEeeccceEEEEecccceeEE
Confidence 5544 567889999999 67 89999999999999999854444
Q ss_pred ecCCCCCCccceeeeeccccEEEEeeeeeecCce-----eeeeeeee-cCCCcceEEEEEeeecCCccEEEEeeCCCeEE
Q 018858 219 RSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGK-----RLHLDYSV-GGHTAAASCVAFSMFGERGKYLISGGNDKLVK 292 (349)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~ 292 (349)
.... ..++..++|+|+|.++| .++.|..+.. ........ ..+..+|+.+.|+ +|++|+.+-+.|-.|-
T Consensus 443 ~~~d--~~~ls~v~ysp~G~~lA-vgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS---~Ds~~~~~~S~d~eiL 516 (626)
T KOG2106|consen 443 IHTD--NEQLSVVRYSPDGAFLA-VGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWS---SDSQFLVSNSGDYEIL 516 (626)
T ss_pred EEec--CCceEEEEEcCCCCEEE-EecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeec---CCCceEEeccCceEEE
Confidence 4333 78999999999999999 4554443221 11222222 2234799999999 8999999999999999
Q ss_pred EEecCCCcceec------------------------------------------------------ccccceeeeccccc
Q 018858 293 VWDCSRFQGVQT------------------------------------------------------SINNDLLIKNINLN 318 (349)
Q Consensus 293 vwd~~~~~~~~~------------------------------------------------------~~~~~~~~~~~~~~ 318 (349)
.|....-++... ...........+|.
T Consensus 517 yW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs 596 (626)
T KOG2106|consen 517 YWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHS 596 (626)
T ss_pred EEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeecccc
Confidence 994433222110 11223445567899
Q ss_pred cceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 319 KKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 319 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
..|++++|...+ ..+++.+.|.+|..|++
T Consensus 597 ~~vt~V~Fl~~d-~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 597 SHVTNVAFLCKD-SHLISTGKDTSIMQWRL 625 (626)
T ss_pred ceeEEEEEeeCC-ceEEecCCCceEEEEEe
Confidence 999999998744 46777779999999987
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-24 Score=155.12 Aligned_cols=211 Identities=17% Similarity=0.242 Sum_probs=164.0
Q ss_pred eeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC----------------------------------------
Q 018858 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK---------------------------------------- 48 (349)
Q Consensus 9 ~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~---------------------------------------- 48 (349)
++-+.|++.|.|.+|+|. |+++++|+.|.+|++......
T Consensus 83 kr~khhkgsiyc~~ws~~-geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gag 161 (350)
T KOG0641|consen 83 KRNKHHKGSIYCTAWSPC-GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAG 161 (350)
T ss_pred eeccccCccEEEEEecCc-cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCC
Confidence 344679999999999998 899999999999888654321
Q ss_pred ------------cEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeec-cC---cccceEEEEEc
Q 018858 49 ------------DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESY-NY---NKEEINQIVCN 112 (349)
Q Consensus 49 ------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~---~~~~v~~~~~~ 112 (349)
+..+.+.+|.+-|.++ ++-++-++++|+.|.+|+.||++-+.++..+..- .. ....|..++..
T Consensus 162 dc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vd 240 (350)
T KOG0641|consen 162 DCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVD 240 (350)
T ss_pred cceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEEC
Confidence 1111223444555444 3345678899999999999999876555544331 11 12578999999
Q ss_pred cCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCC
Q 018858 113 PKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDK 192 (349)
Q Consensus 113 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (349)
|.|++|++|-.|....+||++.+++++.+. .|...|.|+.|+|
T Consensus 241 psgrll~sg~~dssc~lydirg~r~iq~f~-phsadir~vrfsp------------------------------------ 283 (350)
T KOG0641|consen 241 PSGRLLASGHADSSCMLYDIRGGRMIQRFH-PHSADIRCVRFSP------------------------------------ 283 (350)
T ss_pred CCcceeeeccCCCceEEEEeeCCceeeeeC-CCccceeEEEeCC------------------------------------
Confidence 999999999999999999999999999999 8999999999999
Q ss_pred CCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEE
Q 018858 193 TNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAF 272 (349)
Q Consensus 193 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~ 272 (349)
...++++++.|..|++-|+.... ....++.....|+..+..+.|
T Consensus 284 ~a~yllt~syd~~ikltdlqgdl------------------------------------a~el~~~vv~ehkdk~i~~rw 327 (350)
T KOG0641|consen 284 GAHYLLTCSYDMKIKLTDLQGDL------------------------------------AHELPIMVVAEHKDKAIQCRW 327 (350)
T ss_pred CceEEEEecccceEEEeecccch------------------------------------hhcCceEEEEeccCceEEEEe
Confidence 78899999999999999998531 011223344568888889999
Q ss_pred eeecCCccEEEEeeCCCeEEEEecC
Q 018858 273 SMFGERGKYLISGGNDKLVKVWDCS 297 (349)
Q Consensus 273 ~~~~~~~~~l~s~~~d~~i~vwd~~ 297 (349)
+ |..--+++.+.|.++.+|-++
T Consensus 328 h---~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 328 H---PQDFSFISSSADKTATLWALN 349 (350)
T ss_pred c---CccceeeeccCcceEEEeccC
Confidence 9 777778899999999999764
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-24 Score=180.18 Aligned_cols=284 Identities=13% Similarity=0.101 Sum_probs=210.2
Q ss_pred eEEEEecCCCceEEEeCCCCcEEEEECCCCcE---EEEeecCCCCeEEEEEecC-----------CCEEEEEeCCCeEEE
Q 018858 19 TCCIASRDRPGFVASSGEDGCICWFDLRSKDV---QLVTDVGNGPVTSLCFKSG-----------NEDIIYVSSGKEVKS 84 (349)
Q Consensus 19 ~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~---~~~~~~~~~~v~~~~~~~~-----------~~~l~~~~~dg~i~i 84 (349)
.++.|++. ...|.....|..|+|||+++-+. ...+-.|...|..+.--|. ...+.+++.|++|++
T Consensus 328 IA~~Fdet-~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl 406 (1080)
T KOG1408|consen 328 IACQFDET-TDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL 406 (1080)
T ss_pred eEEEecCC-CceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence 45689988 68888889999999999987543 3445558887877765441 235889999999999
Q ss_pred EEccCCCcccc----------ee------------------------eccCcccceEEEEEccCCCEEEEEcCCCcEEEE
Q 018858 85 FDVHMPASWRP----------LE------------------------SYNYNKEEINQIVCNPKSSFLACADDGGDVKII 130 (349)
Q Consensus 85 wd~~~~~~~~~----------~~------------------------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 130 (349)
|++........ ++ ..-.....+.+++.+|++++||+|..-|++++|
T Consensus 407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy 486 (1080)
T KOG1408|consen 407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVY 486 (1080)
T ss_pred eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEE
Confidence 99975210000 00 000123468999999999999999999999999
Q ss_pred EcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEE
Q 018858 131 DIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVIN 210 (349)
Q Consensus 131 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d 210 (349)
++.+-+....+. .|+..|.|+.|+... -..++|++++.|.-|.+||
T Consensus 487 ~Lq~l~~~~~~e-AHesEilcLeyS~p~---------------------------------~~~kLLASasrdRlIHV~D 532 (1080)
T KOG1408|consen 487 DLQELEYTCFME-AHESEILCLEYSFPV---------------------------------LTNKLLASASRDRLIHVYD 532 (1080)
T ss_pred Eehhhhhhhhee-cccceeEEEeecCch---------------------------------hhhHhhhhccCCceEEEEe
Confidence 999888877888 899999999998621 0357899999999999999
Q ss_pred ccCceeeeecCCCCCCccceeeeeccc--cEEEEeeeeeecCcee---------eeeeeeecCCCcceEEEEEeeecCCc
Q 018858 211 IESELNISRSKSTTKPLKGSQSTSKVN--IRDAEMEILDQSGGKR---------LHLDYSVGGHTAAASCVAFSMFGERG 279 (349)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---------~~~~~~~~~h~~~i~~i~~~~~~~~~ 279 (349)
...+-.+...-..+...|.++.|.-.| ...++.|. |..+..+ .....+..-....++.++.. |..
T Consensus 533 v~rny~l~qtld~HSssITsvKFa~~gln~~MiscGA-DksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vd---p~~ 608 (1080)
T KOG1408|consen 533 VKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGA-DKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVD---PTS 608 (1080)
T ss_pred cccccchhhhhcccccceeEEEEeecCCceEEEeccC-chhhheehhccccCceeccccccccccceEEEeeeC---CCc
Confidence 987766666666667889999988877 44443332 2222111 01111111124578999999 899
Q ss_pred cEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 280 KYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 280 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
+++++++.|..|+||+++++++. +..+...+|.+....+...| .|.||++.+.|.++.++|.
T Consensus 609 k~v~t~cQDrnirif~i~sgKq~------k~FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df 670 (1080)
T KOG1408|consen 609 KLVVTVCQDRNIRIFDIESGKQV------KSFKGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDF 670 (1080)
T ss_pred ceEEEEecccceEEEecccccee------eeecccccCCCceEEEEECC-CccEEEEeecCCceEEEEe
Confidence 99999999999999999999543 33344456777888888888 7889999999999999985
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-26 Score=198.86 Aligned_cols=247 Identities=19% Similarity=0.209 Sum_probs=198.3
Q ss_pred ceeeeEEEEecCCCc---eEEEeCCCCcEEEEECCC---C---cEEEEeecCCCCeEEEEEecCCC-EEEEEeCCCeEEE
Q 018858 15 KATATCCIASRDRPG---FVASSGEDGCICWFDLRS---K---DVQLVTDVGNGPVTSLCFKSGNE-DIIYVSSGKEVKS 84 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~---~l~t~~~dg~i~vwd~~~---~---~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i 84 (349)
...-+.++|.+.+.. +++.|..||.|.+||... + ..+.+...|.+.|..+.|++... .||+|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 345788999887333 489999999999999764 2 23566778999999999999655 8999999999999
Q ss_pred EEccCCCcccceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCceEeceeccccc--cceeEEEEccCCCCC
Q 018858 85 FDVHMPASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYKSLRAGHS--SICSSVQFIPWKPWE 161 (349)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~ 161 (349)
||+...+...... -....+.|.+++|+..- +.|++++.+|.+.|||++..+.+-.+. .+. ..+..++|+|+
T Consensus 144 WDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls-~~~~~~~~S~l~WhP~---- 217 (1049)
T KOG0307|consen 144 WDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLS-DTPGRMHCSVLAWHPD---- 217 (1049)
T ss_pred eccCCcCCCCCCC-CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccc-cCCCccceeeeeeCCC----
Confidence 9998644322221 22235789999999754 678899999999999999888777776 333 34778999995
Q ss_pred CCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCC---CeEEEEEccCceeeeecCCCCCCccceeeeecccc
Q 018858 162 GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD---GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNI 238 (349)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (349)
+...+++++.| -.|.+||+|...
T Consensus 218 -------------------------------~aTql~~As~dd~~PviqlWDlR~as----------------------- 243 (1049)
T KOG0307|consen 218 -------------------------------HATQLLVASGDDSAPVIQLWDLRFAS----------------------- 243 (1049)
T ss_pred -------------------------------CceeeeeecCCCCCceeEeecccccC-----------------------
Confidence 45667777655 379999998531
Q ss_pred EEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccc
Q 018858 239 RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLN 318 (349)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 318 (349)
.+.+.+++|...|.++.|++ .|..+|++++.|+.|.+|+.+++ +++..+....
T Consensus 244 ----------------sP~k~~~~H~~GilslsWc~--~D~~lllSsgkD~~ii~wN~~tg---------Evl~~~p~~~ 296 (1049)
T KOG0307|consen 244 ----------------SPLKILEGHQRGILSLSWCP--QDPRLLLSSGKDNRIICWNPNTG---------EVLGELPAQG 296 (1049)
T ss_pred ----------------CchhhhcccccceeeeccCC--CCchhhhcccCCCCeeEecCCCc---------eEeeecCCCC
Confidence 56677889999999999995 55689999999999999999998 6777777778
Q ss_pred cceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 319 KKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 319 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
+.+..+.|+|.+...+++++.||.|-|+.+
T Consensus 297 nW~fdv~w~pr~P~~~A~asfdgkI~I~sl 326 (1049)
T KOG0307|consen 297 NWCFDVQWCPRNPSVMAAASFDGKISIYSL 326 (1049)
T ss_pred cceeeeeecCCCcchhhhheeccceeeeee
Confidence 889999999999889999999999999986
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=175.43 Aligned_cols=240 Identities=17% Similarity=0.143 Sum_probs=194.6
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 85 (349)
+...+|.|-.++|+++.|.++ ++++++++.|+.+++|++...+...++.+|...|+++.|......+++|+.|.+|++|
T Consensus 210 ~~~~tLaGs~g~it~~d~d~~-~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~W 288 (459)
T KOG0288|consen 210 ELISTLAGSLGNITSIDFDSD-NKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLW 288 (459)
T ss_pred hhhhhhhccCCCcceeeecCC-CceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhh
Confidence 467778888899999999998 8899999999999999999999999999999999999998877779999999999999
Q ss_pred EccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCC
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPE 165 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 165 (349)
|+....+.+.+.. ...+..+..+ ...+++|..|+.|++||.++..+..+.. . .+.|+++..++
T Consensus 289 Dl~k~~C~kt~l~----~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~-~-gg~vtSl~ls~--------- 351 (459)
T KOG0288|consen 289 DLQKAYCSKTVLP----GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVP-L-GGRVTSLDLSM--------- 351 (459)
T ss_pred hhhhhheeccccc----cccccceEec--ceeeeecccccceEEEeccCCceeeEee-c-CcceeeEeecc---------
Confidence 9997544433322 2445566655 5578899999999999999999988887 3 45899999998
Q ss_pred CCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCC---CCCccceeeeeccccEEEE
Q 018858 166 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKST---TKPLKGSQSTSKVNIRDAE 242 (349)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 242 (349)
++..+.+.+.|.++.++|+++......+... .......+.|||++.|++
T Consensus 352 ---------------------------~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Yva- 403 (459)
T KOG0288|consen 352 ---------------------------DGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVA- 403 (459)
T ss_pred ---------------------------CCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceee-
Confidence 7888999999999999999987665544322 234578899999999999
Q ss_pred eeeeeecC----ceeeeeeeeecCCCc--ceEEEEEeeecCCccEEEEeeCCCeEEEE
Q 018858 243 MEILDQSG----GKRLHLDYSVGGHTA--AASCVAFSMFGERGKYLISGGNDKLVKVW 294 (349)
Q Consensus 243 ~~~~~~~~----~~~~~~~~~~~~h~~--~i~~i~~~~~~~~~~~l~s~~~d~~i~vw 294 (349)
+|+.++.+ ....++.+.+..... .|++++|+ |.|..|++++.++.+.+|
T Consensus 404 AGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~---~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 404 AGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWN---PSGSGLLSADKQKAVTLW 458 (459)
T ss_pred eccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEc---CCCchhhcccCCcceEec
Confidence 45544432 223444445544333 69999999 899999999999999999
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-24 Score=167.39 Aligned_cols=284 Identities=15% Similarity=0.148 Sum_probs=199.8
Q ss_pred ceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc---------EEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 018858 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKD---------VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 85 (349)
..+|..+.|.++..+.++||+.|..|++|.++... ....+..|...|+++.|+|+|+.||+|+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 46899999999855599999999999999876422 245667899999999999999999999999999999
Q ss_pred Ecc--------C-----CCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEE
Q 018858 86 DVH--------M-----PASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSV 152 (349)
Q Consensus 86 d~~--------~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 152 (349)
-.. + .+.......+.+|...+..++|+|++.++++++.|..+++||+..|+....+. .|...+..+
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~-dh~~yvqgv 171 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD-DHEHYVQGV 171 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecc-cccccccee
Confidence 765 2 12233445567788999999999999999999999999999999999999998 999999999
Q ss_pred EEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeec------------
Q 018858 153 QFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS------------ 220 (349)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------------ 220 (349)
+|.|- ++++++-+.|...+.+++...+.....
T Consensus 172 awDpl------------------------------------~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~ 215 (434)
T KOG1009|consen 172 AWDPL------------------------------------NQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNE 215 (434)
T ss_pred ecchh------------------------------------hhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCC
Confidence 99994 444444444444444433322211100
Q ss_pred ----------CCCCCCccceeeeeccccEEEEee-eeeecCce------------eeeeeeeecCCCcceEEEEEeeec-
Q 018858 221 ----------KSTTKPLKGSQSTSKVNIRDAEME-ILDQSGGK------------RLHLDYSVGGHTAAASCVAFSMFG- 276 (349)
Q Consensus 221 ----------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------------~~~~~~~~~~h~~~i~~i~~~~~~- 276 (349)
....+...+.++|+|+|..+++.. ........ ..++...+.+...+...+.++|..
T Consensus 216 ~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~ 295 (434)
T KOG1009|consen 216 REGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYY 295 (434)
T ss_pred CCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEE
Confidence 011134456789999999998722 11111110 012222333334455555555410
Q ss_pred --------------CCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCe
Q 018858 277 --------------ERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKV 342 (349)
Q Consensus 277 --------------~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 342 (349)
|-+-.++.++. +.|+|||.+... ++.....-|-..++.++|++ +|..|+..+.||.
T Consensus 296 elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~~--------P~~~v~nihy~~iTDiaws~-dg~~l~vSS~DGy 365 (434)
T KOG1009|consen 296 ELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQTLE--------PLAVVDNIHYSAITDIAWSD-DGSVLLVSSTDGF 365 (434)
T ss_pred EeccccccccccccccceEEEEeec-ceEEEecccccc--------ceEEEeeeeeeeecceeecC-CCcEEEEeccCCc
Confidence 22234455554 679999999863 34444455888999999988 8999999999986
Q ss_pred EEE
Q 018858 343 VKV 345 (349)
Q Consensus 343 i~i 345 (349)
.-+
T Consensus 366 CS~ 368 (434)
T KOG1009|consen 366 CSL 368 (434)
T ss_pred eEE
Confidence 544
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.5e-25 Score=166.09 Aligned_cols=284 Identities=14% Similarity=0.140 Sum_probs=199.5
Q ss_pred CceeeeEEEEecC---CCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCC-CEEEEEeCCCeEEEEEccC
Q 018858 14 HKATATCCIASRD---RPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGN-EDIIYVSSGKEVKSFDVHM 89 (349)
Q Consensus 14 h~~~i~~~~~~~~---~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~ 89 (349)
|...-..++|+-+ +..++|.||.-|.|+|.|+.+++....+.+|...|..+.+.|.. +++++++.|..|++|++++
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~ 167 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT 167 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence 6777788888754 24578999999999999999999999999999999999999954 6889999999999999999
Q ss_pred CCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCC--
Q 018858 90 PASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENN-- 167 (349)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-- 167 (349)
..++..+....+|.+.|.++.|++++.+|++++.|..|++|++...+....++ .++.|+|++.-...+...
T Consensus 168 ~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE-------~s~~~~~~~t~~pfpt~~~~ 240 (385)
T KOG1034|consen 168 DVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLE-------LSITYSPNKTTRPFPTPKTH 240 (385)
T ss_pred CeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhh-------hhcccCCCCccCcCCccccc
Confidence 98888888899999999999999999999999999999999998654433333 113455532221111111
Q ss_pred --CCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEcc-CceeeeecCCCCCCccceeeeeccccEEEEee
Q 018858 168 --GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE-SELNISRSKSTTKPLKGSQSTSKVNIRDAEME 244 (349)
Q Consensus 168 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (349)
.....-.+...+.++.| -|+++++-+-++.|..|..- -.+.......+
T Consensus 241 fp~fst~diHrnyVDCvrw--------~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~--------------------- 291 (385)
T KOG1034|consen 241 FPDFSTTDIHRNYVDCVRW--------FGDFILSKSCENAIVCWKPGKLEESIHNVKPP--------------------- 291 (385)
T ss_pred cccccccccccchHHHHHH--------HhhheeecccCceEEEEecchhhhhhhccCCC---------------------
Confidence 00011222223333333 36788888888999999873 22111111111
Q ss_pred eeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeec--cccccceE
Q 018858 245 ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKN--INLNKKVN 322 (349)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~v~ 322 (349)
......+..+.-....|.-+.|+ +.+-++.||.|.+.|.|++||++..+.. ...++ ..-...|.
T Consensus 292 ------es~~Ti~~~~~~~~c~iWfirf~-~d~~~~~la~gnq~g~v~vwdL~~~ep~-------~~ttl~~s~~~~tVR 357 (385)
T KOG1034|consen 292 ------ESATTILGEFDYPMCDIWFIRFA-FDPWQKMLALGNQSGKVYVWDLDNNEPP-------KCTTLTHSKSGSTVR 357 (385)
T ss_pred ------ccceeeeeEeccCccceEEEEEe-ecHHHHHHhhccCCCcEEEEECCCCCCc-------cCceEEeccccceee
Confidence 00012233344345566666655 2267889999999999999999987531 11111 11234577
Q ss_pred EEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 323 WLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 323 ~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
..+|+- |+.+|+..++|++|.-||.
T Consensus 358 Q~sfS~-dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 358 QTSFSR-DGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred eeeecc-cCcEEEEEeCCCcEEEEEe
Confidence 778865 8999999999999999984
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-24 Score=170.83 Aligned_cols=259 Identities=18% Similarity=0.192 Sum_probs=188.6
Q ss_pred CCCeeeeCCceeeeEEEEecCCC-ceEEEeCCCCcEEEEECCCCc----EEEEeecCCCCeEEEEEec-CCCEEEEEeCC
Q 018858 6 AKPRRLRGHKATATCCIASRDRP-GFVASSGEDGCICWFDLRSKD----VQLVTDVGNGPVTSLCFKS-GNEDIIYVSSG 79 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~-~~l~t~~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d 79 (349)
......+.|.+.|++++|+|... +++++|..-|+|-+||+.+.+ .+..+..|..+|.++.|+| +...+++.+.|
T Consensus 177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyD 256 (498)
T KOG4328|consen 177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYD 256 (498)
T ss_pred eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccC
Confidence 34566678899999999999744 688899999999999995322 2566778999999999999 45679999999
Q ss_pred CeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceE-eceeccccccceeEEEEccCC
Q 018858 80 KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL-YKSLRAGHSSICSSVQFIPWK 158 (349)
Q Consensus 80 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~ 158 (349)
|+|+.-|++.+.. ..+.........+..+.|+.+...++++..-|...+||++++.. ...+. .|...|..++++|.
T Consensus 257 GtiR~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~-lh~kKI~sv~~NP~- 333 (498)
T KOG4328|consen 257 GTIRLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLR-LHKKKITSVALNPV- 333 (498)
T ss_pred ceeeeeeecchhh-HHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhh-hhhcccceeecCCC-
Confidence 9999999986532 22222222335677888888888888888888999999996544 55666 68889999999995
Q ss_pred CCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeecccc
Q 018858 159 PWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNI 238 (349)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (349)
...+|++++.|++.+|||++.-.
T Consensus 334 ----------------------------------~p~~laT~s~D~T~kIWD~R~l~----------------------- 356 (498)
T KOG4328|consen 334 ----------------------------------CPWFLATASLDQTAKIWDLRQLR----------------------- 356 (498)
T ss_pred ----------------------------------CchheeecccCcceeeeehhhhc-----------------------
Confidence 56789999999999999999631
Q ss_pred EEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccc
Q 018858 239 RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLN 318 (349)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 318 (349)
....++.....|...|.+..|| |.+..|+|.+.|..|+|||..--... -.......|.
T Consensus 357 -------------~K~sp~lst~~HrrsV~sAyFS---Ps~gtl~TT~~D~~IRv~dss~~sa~------~~p~~~I~Hn 414 (498)
T KOG4328|consen 357 -------------GKASPFLSTLPHRRSVNSAYFS---PSGGTLLTTCQDNEIRVFDSSCISAK------DEPLGTIPHN 414 (498)
T ss_pred -------------CCCCcceecccccceeeeeEEc---CCCCceEeeccCCceEEeeccccccc------CCccceeecc
Confidence 0111122334699999999999 66666999999999999998511000 0111112222
Q ss_pred c------ceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 319 K------KVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 319 ~------~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
. .....+|.| +..+++++-.-..|-|+|
T Consensus 415 ~~t~RwlT~fKA~W~P-~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 415 NRTGRWLTPFKAAWDP-DYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred CcccccccchhheeCC-CccEEEEeccCcceeEEc
Confidence 1 123346877 666788876666676665
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=171.40 Aligned_cols=209 Identities=18% Similarity=0.196 Sum_probs=167.6
Q ss_pred eCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEEccCC
Q 018858 12 RGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKS-GNEDIIYVSSGKEVKSFDVHMP 90 (349)
Q Consensus 12 ~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~ 90 (349)
.+|++.|.+++|+..-.+.||+|+.|.+|++||+.++++..++..|.+.|.++.|+| ...+|++|+.|++|.+.|.+..
T Consensus 240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~ 319 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP 319 (463)
T ss_pred ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCc
Confidence 479999999999987788999999999999999999999999999999999999998 5678999999999999999953
Q ss_pred CcccceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCc-eEeceeccccccceeEEEEccCCCCCCCCCCCC
Q 018858 91 ASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQH-CLYKSLRAGHSSICSSVQFIPWKPWEGLPENNG 168 (349)
Q Consensus 91 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 168 (349)
......-.+ .+.|..++|.|.. ..++++..||.|+-+|+|+. +++.+++ .|.++|.++++++.
T Consensus 320 ~~s~~~wk~---~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~-AHd~~ISgl~~n~~----------- 384 (463)
T KOG0270|consen 320 SNSGKEWKF---DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLK-AHDDEISGLSVNIQ----------- 384 (463)
T ss_pred cccCceEEe---ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEE-eccCCcceEEecCC-----------
Confidence 222222222 4779999999965 67888899999999999954 8999999 99999999999985
Q ss_pred CCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeee
Q 018858 169 NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ 248 (349)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (349)
...++++++.|+.+++|++.....
T Consensus 385 ------------------------~p~~l~t~s~d~~Vklw~~~~~~~-------------------------------- 408 (463)
T KOG0270|consen 385 ------------------------TPGLLSTASTDKVVKLWKFDVDSP-------------------------------- 408 (463)
T ss_pred ------------------------CCcceeeccccceEEEEeecCCCC--------------------------------
Confidence 567899999999999999985310
Q ss_pred cCceeeeeeeeecCCCcceEEEEEeeecCCc-cEEEEeeCCCeEEEEecCCCc
Q 018858 249 SGGKRLHLDYSVGGHTAAASCVAFSMFGERG-KYLISGGNDKLVKVWDCSRFQ 300 (349)
Q Consensus 249 ~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~ 300 (349)
..++.-.-.-+...|.++. |+- -+++.|+..+.++|||+.+..
T Consensus 409 ------~~v~~~~~~~~rl~c~~~~---~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 409 ------KSVKEHSFKLGRLHCFALD---PDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred ------cccccccccccceeecccC---CCcceEEEecCccceEEEeecccCh
Confidence 1111100012335666777 443 467788888889999998863
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.9e-25 Score=160.91 Aligned_cols=255 Identities=15% Similarity=0.136 Sum_probs=186.3
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEee-cCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD-VGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
.+...|++|.+.|+|+.|..+ .+|++|..-|.+++|++.+.+....++ .+...|+.+...|+ ..+.+-+.|..+.+
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~--~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~l 81 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQAN--ERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLIL 81 (323)
T ss_pred CCeeEeccccchheehhhccc--hhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEE
Confidence 467788999999999999876 469999999999999999988887887 67889999998887 56888899999999
Q ss_pred EEccCCCccc------------------------ceeecc--------------------------CcccceEEEEEcc-
Q 018858 85 FDVHMPASWR------------------------PLESYN--------------------------YNKEEINQIVCNP- 113 (349)
Q Consensus 85 wd~~~~~~~~------------------------~~~~~~--------------------------~~~~~v~~~~~~~- 113 (349)
|++..+.... .+..+. ...+.+++..+..
T Consensus 82 w~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~ 161 (323)
T KOG0322|consen 82 WTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHA 161 (323)
T ss_pred EEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccc
Confidence 9986421000 000000 0012334444322
Q ss_pred CC--CEEEEEcCCCcEEEEEcCCceEeceec---------cccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEe
Q 018858 114 KS--SFLACADDGGDVKIIDIRQHCLYKSLR---------AGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAI 182 (349)
Q Consensus 114 ~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (349)
.+ -++++|.++|.+.+||+.++..+..++ ..|..++.++.|.+
T Consensus 162 c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas-------------------------- 215 (323)
T KOG0322|consen 162 CGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS-------------------------- 215 (323)
T ss_pred ccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeech--------------------------
Confidence 22 245788899999999999874333332 15677788887776
Q ss_pred ecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecC
Q 018858 183 AIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGG 262 (349)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (349)
.-..=++|+.+..+..|++.-.. ..........-
T Consensus 216 ----------~~~rGisgga~dkl~~~Sl~~s~------------------------------------gslq~~~e~~l 249 (323)
T KOG0322|consen 216 ----------SCDRGISGGADDKLVMYSLNHST------------------------------------GSLQIRKEITL 249 (323)
T ss_pred ----------hhcCCcCCCccccceeeeecccc------------------------------------CcccccceEEe
Confidence 22223567777788889887420 00011111222
Q ss_pred CCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCe
Q 018858 263 HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKV 342 (349)
Q Consensus 263 h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 342 (349)
....|..+.+- ||++.+||++.|+.||||+.++. ..+..+..|.+.|++++|+| +..++++++.|+.
T Consensus 250 knpGv~gvrIR---pD~KIlATAGWD~RiRVyswrtl---------~pLAVLkyHsagvn~vAfsp-d~~lmAaaskD~r 316 (323)
T KOG0322|consen 250 KNPGVSGVRIR---PDGKILATAGWDHRIRVYSWRTL---------NPLAVLKYHSAGVNAVAFSP-DCELMAAASKDAR 316 (323)
T ss_pred cCCCccceEEc---cCCcEEeecccCCcEEEEEeccC---------CchhhhhhhhcceeEEEeCC-CCchhhhccCCce
Confidence 23457778888 89999999999999999999998 78888899999999999998 7779999999999
Q ss_pred EEEeeC
Q 018858 343 VKVYSI 348 (349)
Q Consensus 343 i~iw~~ 348 (349)
|-+|++
T Consensus 317 ISLWkL 322 (323)
T KOG0322|consen 317 ISLWKL 322 (323)
T ss_pred EEeeec
Confidence 999986
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-24 Score=164.00 Aligned_cols=151 Identities=18% Similarity=0.253 Sum_probs=125.0
Q ss_pred ceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEec--CCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccce
Q 018858 29 GFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKS--GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEI 106 (349)
Q Consensus 29 ~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v 106 (349)
..+|++-..|.|++||..+++.+..++++...+..++|.. ....+.+|+.||+|++||++.......+..-+....+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 4588888899999999999999999999999999999976 56789999999999999999865444443322222466
Q ss_pred EEEEEccCCCEEEEEcC----CCcEEEEEcCCceE-eceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEE
Q 018858 107 NQIVCNPKSSFLACADD----GGDVKIIDIRQHCL-YKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHA 181 (349)
Q Consensus 107 ~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (349)
.+++.+-.++.+++|.. +-.|.+||+|..+. +..+...|...|+++.|+|.
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~------------------------ 176 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPS------------------------ 176 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCC------------------------
Confidence 77777767788888864 56799999997765 77776689999999999996
Q ss_pred eecCcccccCCCCcEEEEEcCCCeEEEEEccCc
Q 018858 182 IAIPDADMLDKTNKICVVAKGDGVVDVINIESE 214 (349)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 214 (349)
+.++|++|+.||-|.+||++..
T Consensus 177 -----------~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 177 -----------DPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred -----------CCCeEEeecccceEEeeecCCC
Confidence 7899999999999999999864
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-22 Score=165.95 Aligned_cols=266 Identities=13% Similarity=0.093 Sum_probs=182.1
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceE-EEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEE-eCCCe
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFV-ASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYV-SSGKE 81 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l-~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~ 81 (349)
+++.++.+..|.. +.+++|+|+ ++.+ ++++.++.|++||..+++....+..+.. +..++|+|+++.++++ +.++.
T Consensus 20 t~~~~~~~~~~~~-~~~l~~~~d-g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~ 96 (300)
T TIGR03866 20 TLEVTRTFPVGQR-PRGITLSKD-GKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNL 96 (300)
T ss_pred CCceEEEEECCCC-CCceEECCC-CCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCe
Confidence 4566777776544 678999998 6655 6778889999999999888777765443 5678999999987665 45899
Q ss_pred EEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCC-cEEEEEcCCceEeceeccccccceeEEEEccCCCC
Q 018858 82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGG-DVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPW 160 (349)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 160 (349)
|++||+++.+. +..+.. ...+..++|+|++++++++..++ .+.+||.++++...... .......++|+|
T Consensus 97 l~~~d~~~~~~---~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~s~---- 166 (300)
T TIGR03866 97 VTVIDIETRKV---LAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL--VDQRPRFAEFTA---- 166 (300)
T ss_pred EEEEECCCCeE---EeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE--cCCCccEEEECC----
Confidence 99999987533 233321 23467899999999999888765 46778998887765544 233457788888
Q ss_pred CCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEE-cCCCeEEEEEccCceeeeecCCC------CCCccceeee
Q 018858 161 EGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA-KGDGVVDVINIESELNISRSKST------TKPLKGSQST 233 (349)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~------~~~~~~~~~~ 233 (349)
+++.|+++ ..++.|++||+++++........ .......+++
T Consensus 167 --------------------------------dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 214 (300)
T TIGR03866 167 --------------------------------DGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKL 214 (300)
T ss_pred --------------------------------CCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEE
Confidence 77777544 46899999999987655433211 1122346889
Q ss_pred eccccEEEEeeeeee----cCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEe-eCCCeEEEEecCCCcceeccccc
Q 018858 234 SKVNIRDAEMEILDQ----SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISG-GNDKLVKVWDCSRFQGVQTSINN 308 (349)
Q Consensus 234 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~-~~d~~i~vwd~~~~~~~~~~~~~ 308 (349)
+|+++++++....+. ......+....+. +...+.++.|+ |++++|+++ +.++.|++||+.++
T Consensus 215 s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~---~~g~~l~~~~~~~~~i~v~d~~~~--------- 281 (300)
T TIGR03866 215 TKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFT---PDEKYLLTTNGVSNDVSVIDVAAL--------- 281 (300)
T ss_pred CCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEEC---CCCCEEEEEcCCCCeEEEEECCCC---------
Confidence 999998654321111 1111222222222 34468899999 899999876 46899999999997
Q ss_pred ceeeeccccccceEEEEeec
Q 018858 309 DLLIKNINLNKKVNWLCTTP 328 (349)
Q Consensus 309 ~~~~~~~~~~~~v~~~~~~~ 328 (349)
+.+..+. .....+.++++|
T Consensus 282 ~~~~~~~-~~~~~~~~~~~~ 300 (300)
T TIGR03866 282 KVIKSIK-VGRLPWGVVVRP 300 (300)
T ss_pred cEEEEEE-cccccceeEeCC
Confidence 4444443 235557777653
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-24 Score=176.38 Aligned_cols=131 Identities=15% Similarity=0.126 Sum_probs=106.8
Q ss_pred CCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcE------EEEeecCCCCeEEEEEecCCCEEEEEeCCC
Q 018858 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV------QLVTDVGNGPVTSLCFKSGNEDIIYVSSGK 80 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 80 (349)
.+..|.+|.+.|+.+.|+|-...+|+|++.|..++||.+..+-. -..+.+.+-.|.++.|+|..+-|+..+..|
T Consensus 71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g 150 (1012)
T KOG1445|consen 71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHG 150 (1012)
T ss_pred ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCc
Confidence 45667899999999999997678999999999999999974321 122333456788999999887788778899
Q ss_pred eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcC-CceEece
Q 018858 81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIR-QHCLYKS 140 (349)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~ 140 (349)
.++|||+.++ +.+..+.+|.+.|.+..|+.||.++++++.|+.|+|||.+ .++.++.
T Consensus 151 ~v~i~D~stq---k~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~ 208 (1012)
T KOG1445|consen 151 SVYITDISTQ---KTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQT 208 (1012)
T ss_pred eEEEEEcccC---ceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCcccc
Confidence 9999999976 4556677788999999999999999999999999999987 3344433
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-24 Score=166.56 Aligned_cols=241 Identities=16% Similarity=0.177 Sum_probs=191.2
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK 83 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 83 (349)
+.++.++|+.|.+.|..+++.. ..+++++.|.+|+.|.++. .++.++.+ ...+..+.-+..++.++++|. .|.
T Consensus 98 qR~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~ 170 (433)
T KOG0268|consen 98 QRECIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QID 170 (433)
T ss_pred hhhhhheeecccCceeeEEecc---cceEEecCCcceeeeeccC-Ccceeeec-cccccccccccccccccccCc--eee
Confidence 4567899999999999999985 5789999999999999875 45666653 456777777777778888885 499
Q ss_pred EEEccCCCcccceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCC
Q 018858 84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEG 162 (349)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 162 (349)
|||.+.. .++..+.-....+.++.|+|.. ..|++++.|+.|.+||++++.+++.+. .......++|+|
T Consensus 171 IWD~~R~---~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi--~~mRTN~IswnP------ 239 (433)
T KOG0268|consen 171 IWDEQRD---NPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI--LTMRTNTICWNP------ 239 (433)
T ss_pred ecccccC---CccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee--eeccccceecCc------
Confidence 9998743 4455554455789999999976 667788899999999999999888776 456678899999
Q ss_pred CCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEE
Q 018858 163 LPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE 242 (349)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (349)
..-.|++|++|..++.||++.-..+........+.+..+.|||.|+.++
T Consensus 240 ------------------------------eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efv- 288 (433)
T KOG0268|consen 240 ------------------------------EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFV- 288 (433)
T ss_pred ------------------------------cccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhc-
Confidence 6778999999999999999987766666666677888999999999998
Q ss_pred eeeeeecCceeeeeeeeecCC---------CcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCc
Q 018858 243 MEILDQSGGKRLHLDYSVGGH---------TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ 300 (349)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~h---------~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 300 (349)
+|+.|.++.. ...-.+| ...|.++.|+ .|.+|+++||.|+.|++|.....+
T Consensus 289 sgsyDksIRI----f~~~~~~SRdiYhtkRMq~V~~Vk~S---~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 289 SGSYDKSIRI----FPVNHGHSRDIYHTKRMQHVFCVKYS---MDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred cccccceEEE----eecCCCcchhhhhHhhhheeeEEEEe---ccccEEEecCCCcceeeeecchhh
Confidence 5666655432 1111222 2478999999 899999999999999999876543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=174.36 Aligned_cols=271 Identities=13% Similarity=0.108 Sum_probs=202.6
Q ss_pred eeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccce
Q 018858 17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPL 96 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 96 (349)
.|..++|-|| |..|+.+.. ..+.+||..+|.+++++++|...|.+++|+.+|+.+++|+.|..|.+|+-+-. ..+
T Consensus 14 ci~d~afkPD-GsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE---G~L 88 (1081)
T KOG1538|consen 14 CINDIAFKPD-GTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE---GIL 88 (1081)
T ss_pred chheeEECCC-CceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccc---cee
Confidence 8999999999 555554442 47999999999999999999999999999999999999999999999986521 122
Q ss_pred eeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCC
Q 018858 97 ESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNP 176 (349)
Q Consensus 97 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (349)
+ + .|.+.|.|+.|+|-.+.+++++-. ..-+|......+.+ .+ ....+.+++|..
T Consensus 89 k-Y-SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K-~k--ss~R~~~CsWtn-------------------- 142 (1081)
T KOG1538|consen 89 K-Y-SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSK-HK--SSSRIICCSWTN-------------------- 142 (1081)
T ss_pred e-e-ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHh-hh--hheeEEEeeecC--------------------
Confidence 2 2 377899999999999999988764 46788876544322 22 456788889988
Q ss_pred ceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeee-ecCCCCCCccceeeeecccc----EEEEeeeeeecCc
Q 018858 177 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS-RSKSTTKPLKGSQSTSKVNI----RDAEMEILDQSGG 251 (349)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 251 (349)
+|.+|+.|-.+|+|.+-+-...+... ...+...+++.+++|+|... .+.....|..+..
T Consensus 143 ----------------DGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLS 206 (1081)
T KOG1538|consen 143 ----------------DGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLS 206 (1081)
T ss_pred ----------------CCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeE
Confidence 89999999999999998665444433 33455678899999998753 1222223322211
Q ss_pred e---eeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeec
Q 018858 252 K---RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP 328 (349)
Q Consensus 252 ~---~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 328 (349)
. .++.+..-+.-.-...|+.+. ++|.|++.|+.|+.+.+|--+. ..+.+.......|+.++..|
T Consensus 207 Fy~LsG~~Igk~r~L~FdP~CisYf---~NGEy~LiGGsdk~L~~fTR~G----------vrLGTvg~~D~WIWtV~~~P 273 (1081)
T KOG1538|consen 207 FYQLSGKQIGKDRALNFDPCCISYF---TNGEYILLGGSDKQLSLFTRDG----------VRLGTVGEQDSWIWTVQAKP 273 (1081)
T ss_pred EEEecceeecccccCCCCchhheec---cCCcEEEEccCCCceEEEeecC----------eEEeeccccceeEEEEEEcc
Confidence 1 111111111112245678888 8999999999999999997665 56666666788999999988
Q ss_pred CCCCcEEEeeCCCeEEEeeC
Q 018858 329 TESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 329 ~~~~~l~~~~~dg~i~iw~~ 348 (349)
++++++.|+.||+|..|++
T Consensus 274 -NsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 274 -NSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred -CCceEEEEEccCeeehhhh
Confidence 8889999999999998875
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.4e-24 Score=170.33 Aligned_cols=222 Identities=21% Similarity=0.308 Sum_probs=182.1
Q ss_pred eeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCccccee
Q 018858 18 ATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLE 97 (349)
Q Consensus 18 i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 97 (349)
-+|++.... ..++++|+..+.++|||++...+.+.+++|...|+++.++....|||+++..|.|.|..+.++.....+.
T Consensus 82 ~~Cv~~~s~-S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~ 160 (673)
T KOG4378|consen 82 AFCVACASQ-SLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFT 160 (673)
T ss_pred HHHHhhhhc-ceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccccee
Confidence 345555444 5799999999999999999777778889999999999999999999999999999999998865443333
Q ss_pred eccCcccceEEEEEccCCC-EEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCC
Q 018858 98 SYNYNKEEINQIVCNPKSS-FLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNP 176 (349)
Q Consensus 98 ~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (349)
.- ....|.-+.++|..+ +|.+++.+|.|.+||+....++..+...|..+...++|+|.
T Consensus 161 ~~--sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfsps------------------- 219 (673)
T KOG4378|consen 161 ID--SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPS------------------- 219 (673)
T ss_pred cC--CCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCC-------------------
Confidence 22 234567899999775 55688999999999999887777665589999999999994
Q ss_pred ceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeee
Q 018858 177 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHL 256 (349)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (349)
+..+|++.+.|..|.+||.+... .
T Consensus 220 ----------------ne~l~vsVG~Dkki~~yD~~s~~----------------------------------------s 243 (673)
T KOG4378|consen 220 ----------------NEALLVSVGYDKKINIYDIRSQA----------------------------------------S 243 (673)
T ss_pred ----------------ccceEEEecccceEEEeeccccc----------------------------------------c
Confidence 67788999999999999999631 1
Q ss_pred eeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecC
Q 018858 257 DYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPT 329 (349)
Q Consensus 257 ~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 329 (349)
...+. ...+...++|. ++|.+|+.|...|.|+.||++..+ .++.....|...|++++|-+.
T Consensus 244 ~~~l~-y~~Plstvaf~---~~G~~L~aG~s~G~~i~YD~R~~k--------~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 244 TDRLT-YSHPLSTVAFS---ECGTYLCAGNSKGELIAYDMRSTK--------APVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred cceee-ecCCcceeeec---CCceEEEeecCCceEEEEecccCC--------CCceEeeecccceeEEEeeec
Confidence 12222 24578899999 999999999999999999999875 567788889999999999773
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-21 Score=162.18 Aligned_cols=323 Identities=14% Similarity=0.094 Sum_probs=226.9
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEE--EEeecCCCCeEEEEEecCCCEEEEEeCCCe
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQ--LVTDVGNGPVTSLCFKSGNEDIIYVSSGKE 81 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 81 (349)
+.++...++...+.|++++.+|. +..++.|+.||.++.++...++.. ..+....+.|.++.|+|++..|+.|+.||.
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~-~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~ 177 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPE-NTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGV 177 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCc-cceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCce
Confidence 45566677777889999999999 799999999998888888877664 334445689999999999999999999999
Q ss_pred EEEEEccCCCccccee----eccC-cccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEcc
Q 018858 82 VKSFDVHMPASWRPLE----SYNY-NKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 82 i~iwd~~~~~~~~~~~----~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
|++||...+....... .+.. ..--|+++.+-. ...|++|...|.|.+||...+..++.++ .|...|.+++..+
T Consensus 178 Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr-d~tI~sgDS~G~V~FWd~~~gTLiqS~~-~h~adVl~Lav~~ 255 (691)
T KOG2048|consen 178 IRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR-DSTIASGDSAGTVTFWDSIFGTLIQSHS-CHDADVLALAVAD 255 (691)
T ss_pred EEEEEcCCCceEEEeeecccccccCCceEEEEEEEee-cCcEEEecCCceEEEEcccCcchhhhhh-hhhcceeEEEEcC
Confidence 9999999876555211 1111 223467777764 4579999999999999999999999999 9999999999998
Q ss_pred CCCCC--CCCCCC--------------CCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCce-----
Q 018858 157 WKPWE--GLPENN--------------GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL----- 215 (349)
Q Consensus 157 ~~~~~--~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----- 215 (349)
++-.. +..|.. ....+..+...+.++++.+ ..+++|+.|..+.+-..+...
T Consensus 256 ~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~--------~~l~sgG~d~~l~i~~s~~~~~~~h~ 327 (691)
T KOG2048|consen 256 NEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIE--------NALISGGRDFTLAICSSREFKNMDHR 327 (691)
T ss_pred CCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeec--------ceEEecceeeEEEEccccccCchhhh
Confidence 74332 111111 2333445667778888765 366777777766665443310
Q ss_pred ------------------e---------------------------eeecCCCCCCccceeeeeccccEEEEeeeeeec-
Q 018858 216 ------------------N---------------------------ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS- 249 (349)
Q Consensus 216 ------------------~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 249 (349)
. +..........+.+.+.+|+|++++...-.+..
T Consensus 328 ~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~i 407 (691)
T KOG2048|consen 328 QKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKI 407 (691)
T ss_pred ccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEE
Confidence 0 000111223456678999999999862200000
Q ss_pred ------------------------------Cce-----------eeeee----------eee--cCCCcceEEEEEeeec
Q 018858 250 ------------------------------GGK-----------RLHLD----------YSV--GGHTAAASCVAFSMFG 276 (349)
Q Consensus 250 ------------------------------~~~-----------~~~~~----------~~~--~~h~~~i~~i~~~~~~ 276 (349)
+.. ..+.+ ..+ ++....|..+..+
T Consensus 408 y~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~S--- 484 (691)
T KOG2048|consen 408 YRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVS--- 484 (691)
T ss_pred EEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEc---
Confidence 000 00000 000 1123578899999
Q ss_pred CCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 277 ERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 277 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
++|+|+|+.+.+|.|.+|++++.+. -.........++.++++|.+-..|+.+..|+++.-||++
T Consensus 485 sdG~yiaa~~t~g~I~v~nl~~~~~---------~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~ 548 (691)
T KOG2048|consen 485 SDGNYIAAISTRGQIFVYNLETLES---------HLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIE 548 (691)
T ss_pred CCCCEEEEEeccceEEEEEccccee---------ecchhccCcceeeeeccccccCcEEEEecCCeEEEEecc
Confidence 9999999999999999999999632 112224457899999998777789999999999999873
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.9e-23 Score=163.26 Aligned_cols=248 Identities=11% Similarity=0.114 Sum_probs=185.1
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEE--EeecCC-CCeEEEEEecCCCEEEEEeCCCe
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQL--VTDVGN-GPVTSLCFKSGNEDIIYVSSGKE 81 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~--~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~ 81 (349)
...++.+.--..+|.+.+|.|++...+++++....++.||+++.+... ...++. ..+.....++++++|+..+..|.
T Consensus 247 N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~ 326 (514)
T KOG2055|consen 247 NPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGH 326 (514)
T ss_pred ChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCce
Confidence 346677776778999999999944489999999999999999877532 233333 45677888999999999999999
Q ss_pred EEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceecccccccee--EEEEccCCC
Q 018858 82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICS--SVQFIPWKP 159 (349)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~--~~~~~~~~~ 159 (349)
|.+....+++.+..++. .+.|..++|+.+++.|++.+.+|.|++||++...+++.+. ..+.|. +++.++
T Consensus 327 I~lLhakT~eli~s~Ki----eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~--D~G~v~gts~~~S~--- 397 (514)
T KOG2055|consen 327 IHLLHAKTKELITSFKI----EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFV--DDGSVHGTSLCISL--- 397 (514)
T ss_pred EEeehhhhhhhhheeee----ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEe--ecCccceeeeeecC---
Confidence 99998887654444433 4789999999999999999999999999999999998887 334443 344445
Q ss_pred CCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCcee-----eeecCCCCCCccceeeee
Q 018858 160 WEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN-----ISRSKSTTKPLKGSQSTS 234 (349)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~~~~~~~~~ 234 (349)
++.+||+|+..|.|.|||.++... +..........|..+.|+
T Consensus 398 ---------------------------------ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn 444 (514)
T KOG2055|consen 398 ---------------------------------NGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFN 444 (514)
T ss_pred ---------------------------------CCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeC
Confidence 789999999999999999775321 112222334678899999
Q ss_pred ccccEEEEeeeeeecCce-----eeeeeeeec---CCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecC
Q 018858 235 KVNIRDAEMEILDQSGGK-----RLHLDYSVG---GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS 297 (349)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~---~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~ 297 (349)
+|++.+|.+........+ .......++ ..-+.|+|++|+ |.+.+||.|.++|.+.+|.+.
T Consensus 445 ~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFS---P~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 445 HDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFS---PNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred cchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEec---CCCceEEeecCCCceeeEeec
Confidence 999999853322111110 111112222 234579999999 899999999999999999875
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-22 Score=171.60 Aligned_cols=226 Identities=18% Similarity=0.262 Sum_probs=178.7
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 85 (349)
+....+.-|...|.+++.. +.+|++|+.+++|.+|...+++.-..+....-++..++++-+|+++|.||.|-.|++.
T Consensus 47 e~P~ti~~~g~~v~~ia~~---s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~ 123 (933)
T KOG1274|consen 47 EEPETIDISGELVSSIACY---SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLL 123 (933)
T ss_pred cCCchhhccCceeEEEeec---ccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEE
Confidence 3444555577788887764 5589999999999999999887655566667889999999999999999999999999
Q ss_pred EccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceecc------c-cccceeEEEEccCC
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA------G-HSSICSSVQFIPWK 158 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~-~~~~v~~~~~~~~~ 158 (349)
++.+.. ....+.+|+.+|.++.|+|++++||+.+.||.|++||+.++.+...+.. . ....+..++|+|
T Consensus 124 ~~~D~s---~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~P-- 198 (933)
T KOG1274|consen 124 NLDDSS---QEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHP-- 198 (933)
T ss_pred eccccc---hheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecC--
Confidence 988653 3355677889999999999999999999999999999998877666541 0 123455677888
Q ss_pred CCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeecccc
Q 018858 159 PWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNI 238 (349)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (349)
++..|++...|+.|++|+..+.
T Consensus 199 ----------------------------------k~g~la~~~~d~~Vkvy~r~~w------------------------ 220 (933)
T KOG1274|consen 199 ----------------------------------KGGTLAVPPVDNTVKVYSRKGW------------------------ 220 (933)
T ss_pred ----------------------------------CCCeEEeeccCCeEEEEccCCc------------------------
Confidence 7778888889999999998863
Q ss_pred EEEEeeeeeecCceeeeeeeeec--CCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccc
Q 018858 239 RDAEMEILDQSGGKRLHLDYSVG--GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNIN 316 (349)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~--~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 316 (349)
.....+. .+...+..+.|+ |+|+|||+++.||.|.|||.++.+ . ..
T Consensus 221 ----------------e~~f~Lr~~~~ss~~~~~~ws---PnG~YiAAs~~~g~I~vWnv~t~~---------~----~~ 268 (933)
T KOG1274|consen 221 ----------------ELQFKLRDKLSSSKFSDLQWS---PNGKYIAASTLDGQILVWNVDTHE---------R----HE 268 (933)
T ss_pred ----------------eeheeecccccccceEEEEEc---CCCcEEeeeccCCcEEEEecccch---------h----cc
Confidence 2223332 244558999999 899999999999999999999842 1 23
Q ss_pred cccceEEEEeecC
Q 018858 317 LNKKVNWLCTTPT 329 (349)
Q Consensus 317 ~~~~v~~~~~~~~ 329 (349)
....|.+++|.|.
T Consensus 269 ~~~~Vc~~aw~p~ 281 (933)
T KOG1274|consen 269 FKRAVCCEAWKPN 281 (933)
T ss_pred ccceeEEEecCCC
Confidence 4457888888773
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.4e-23 Score=154.87 Aligned_cols=226 Identities=14% Similarity=0.115 Sum_probs=152.9
Q ss_pred EEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCC--CcccceeeccCcccceEEEEEccCCCEEEEEc-CCCcE
Q 018858 51 QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP--ASWRPLESYNYNKEEINQIVCNPKSSFLACAD-DGGDV 127 (349)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i 127 (349)
+..+++|...|++++|+.+|++|++++.|+.|++|+++.- +.-+.+..-. .-+..+.+.|.||.+-++... ....+
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcceEEEEEccCCEE
Confidence 3467889999999999999999999999999999999852 1122222211 124678899999986665444 45569
Q ss_pred EEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEE
Q 018858 128 KIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVD 207 (349)
Q Consensus 128 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 207 (349)
++|-+...+- ... +...+.+.. ..-...+...+.++-+.. ++.++++++.|..|.
T Consensus 158 ~vyk~~K~~d-G~~------~~~~v~~D~------------~~f~~kh~v~~i~iGiA~------~~k~imsas~dt~i~ 212 (420)
T KOG2096|consen 158 CVYKLVKKTD-GSG------SHHFVHIDN------------LEFERKHQVDIINIGIAG------NAKYIMSASLDTKIC 212 (420)
T ss_pred EEEEeeeccc-CCC------Ccccccccc------------cccchhcccceEEEeecC------CceEEEEecCCCcEE
Confidence 9987643221 111 111111110 000001111122222322 788999999999999
Q ss_pred EEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeC
Q 018858 208 VINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN 287 (349)
Q Consensus 208 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~ 287 (349)
+|+++. +.+..+......-+..+.+ |+|+++++++-
T Consensus 213 lw~lkG-----------------------------------------q~L~~idtnq~~n~~aavS---P~GRFia~~gF 248 (420)
T KOG2096|consen 213 LWDLKG-----------------------------------------QLLQSIDTNQSSNYDAAVS---PDGRFIAVSGF 248 (420)
T ss_pred EEecCC-----------------------------------------ceeeeeccccccccceeeC---CCCcEEEEecC
Confidence 999994 4444555445556677888 99999999998
Q ss_pred CCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 288 DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 288 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
--.|+||.+--++.-. -.+......+.+|...|.+++|++ ++..+++++.||+++|||.
T Consensus 249 TpDVkVwE~~f~kdG~-fqev~rvf~LkGH~saV~~~aFsn-~S~r~vtvSkDG~wriwdt 307 (420)
T KOG2096|consen 249 TPDVKVWEPIFTKDGT-FQEVKRVFSLKGHQSAVLAAAFSN-SSTRAVTVSKDGKWRIWDT 307 (420)
T ss_pred CCCceEEEEEeccCcc-hhhhhhhheeccchhheeeeeeCC-CcceeEEEecCCcEEEeec
Confidence 8899999974322110 011144567789999999999987 7889999999999999996
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-22 Score=153.46 Aligned_cols=242 Identities=12% Similarity=0.102 Sum_probs=167.2
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEece
Q 018858 61 VTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKS 140 (349)
Q Consensus 61 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 140 (349)
..++.|++.|.+||+|+.+|.|.|||+.+.. .-..+.+|..+|++++|+++|+.|++++.|..|.+||+..|.+++.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~---iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR---IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc---hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE
Confidence 6789999999999999999999999999753 3455677889999999999999999999999999999999999999
Q ss_pred eccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeec
Q 018858 141 LRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS 220 (349)
Q Consensus 141 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 220 (349)
++ .+++|....|+|. +.+..+++- .+..-.+.++..+......
T Consensus 103 ir--f~spv~~~q~hp~----------------------------------k~n~~va~~-~~~sp~vi~~s~~~h~~Lp 145 (405)
T KOG1273|consen 103 IR--FDSPVWGAQWHPR----------------------------------KRNKCVATI-MEESPVVIDFSDPKHSVLP 145 (405)
T ss_pred EE--ccCccceeeeccc----------------------------------cCCeEEEEE-ecCCcEEEEecCCceeecc
Confidence 98 7899999999993 123333333 3333344444433222222
Q ss_pred CCC---CCCccceeeeeccccEEEEeeeeeec----CceeeeeeeeecCCC-cceEEEEEeeecCCccEEEEeeCCCeEE
Q 018858 221 KST---TKPLKGSQSTSKVNIRDAEMEILDQS----GGKRLHLDYSVGGHT-AAASCVAFSMFGERGKYLISGGNDKLVK 292 (349)
Q Consensus 221 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~h~-~~i~~i~~~~~~~~~~~l~s~~~d~~i~ 292 (349)
... ......+..|.+.|+++++ |...+. .....+++..++-.. ..|..+.++ ..|++|+.-+.|+.||
T Consensus 146 ~d~d~dln~sas~~~fdr~g~yIit-GtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s---~~g~~liiNtsDRvIR 221 (405)
T KOG1273|consen 146 KDDDGDLNSSASHGVFDRRGKYIIT-GTSKGKLLVYDAETLECVASFRITSVQAIKQIIVS---RKGRFLIINTSDRVIR 221 (405)
T ss_pred CCCccccccccccccccCCCCEEEE-ecCcceEEEEecchheeeeeeeechheeeeEEEEe---ccCcEEEEecCCceEE
Confidence 221 2222334568999999984 333222 222345555554433 678899999 8999999999999999
Q ss_pred EEecCCCcceecccccceeeeccc--cccceEEEEeecCCCCcEEEee-CCCeEEEee
Q 018858 293 VWDCSRFQGVQTSINNDLLIKNIN--LNKKVNWLCTTPTESENLVVCD-TSKVVKVYS 347 (349)
Q Consensus 293 vwd~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iw~ 347 (349)
.|+++.-..........+.+.+.. .+..-.+++|+. +|.|+++++ .-..++||.
T Consensus 222 ~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~-dgeYv~a~s~~aHaLYIWE 278 (405)
T KOG1273|consen 222 TYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG-DGEYVCAGSARAHALYIWE 278 (405)
T ss_pred EEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecC-CccEEEeccccceeEEEEe
Confidence 999874322111111121122221 122445667766 898888886 557899996
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-23 Score=168.15 Aligned_cols=212 Identities=18% Similarity=0.272 Sum_probs=169.3
Q ss_pred cCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccC--cccceEEEEEccCCCEEEEEcCCCcEEEEEcC
Q 018858 56 VGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNY--NKEEINQIVCNPKSSFLACADDGGDVKIIDIR 133 (349)
Q Consensus 56 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 133 (349)
.|.+-|.++.++...+++++|+ .|.|+|||+.......++..+.. ....+....+.|||+.|++|++-.++.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 3778888999999999999998 56799999986544445544433 24678999999999999999999999999998
Q ss_pred CceE--eceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEc
Q 018858 134 QHCL--YKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINI 211 (349)
Q Consensus 134 ~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 211 (349)
...+ ..++. ...-.+++++.+| |.+..++++.||.|.|||+
T Consensus 496 apTprikaelt-ssapaCyALa~sp------------------------------------DakvcFsccsdGnI~vwDL 538 (705)
T KOG0639|consen 496 APTPRIKAELT-SSAPACYALAISP------------------------------------DAKVCFSCCSDGNIAVWDL 538 (705)
T ss_pred CCCcchhhhcC-CcchhhhhhhcCC------------------------------------ccceeeeeccCCcEEEEEc
Confidence 6543 23333 3334567777777 7889999999999999999
Q ss_pred cCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeE
Q 018858 212 ESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLV 291 (349)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i 291 (349)
.+. ..+..+++|...+.||.++ +||..|.||+-|++|
T Consensus 539 hnq----------------------------------------~~VrqfqGhtDGascIdis---~dGtklWTGGlDntv 575 (705)
T KOG0639|consen 539 HNQ----------------------------------------TLVRQFQGHTDGASCIDIS---KDGTKLWTGGLDNTV 575 (705)
T ss_pred ccc----------------------------------------eeeecccCCCCCceeEEec---CCCceeecCCCccce
Confidence 974 6778899999999999999 899999999999999
Q ss_pred EEEecCCCcceecc-------------------------------cccceeeeccccccceEEEEeecCCCCcEEEeeCC
Q 018858 292 KVWDCSRFQGVQTS-------------------------------INNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS 340 (349)
Q Consensus 292 ~vwd~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 340 (349)
|-||++.+.+.+.- ...+....+..|...|.++.|.+ .|+++++.+.|
T Consensus 576 RcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~-cGkwfvStGkD 654 (705)
T KOG0639|consen 576 RCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAY-CGKWFVSTGKD 654 (705)
T ss_pred eehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecc-cCceeeecCch
Confidence 99999987664320 01122234456888999999987 89999999999
Q ss_pred CeEEEeeCC
Q 018858 341 KVVKVYSIS 349 (349)
Q Consensus 341 g~i~iw~~~ 349 (349)
..+..|..+
T Consensus 655 nlLnawrtP 663 (705)
T KOG0639|consen 655 NLLNAWRTP 663 (705)
T ss_pred hhhhhccCc
Confidence 999999764
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-22 Score=169.11 Aligned_cols=259 Identities=15% Similarity=0.210 Sum_probs=201.4
Q ss_pred CCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc----EEEEeecCCCCeEEEEEecCCCEEEEEeCCCeE
Q 018858 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD----VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEV 82 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 82 (349)
+...+.||.+.|+.++|+|. |.+|++.+.|.+-+++-.-..+ .+..-+.|.-.++|+++-+....+++|.....+
T Consensus 353 ~~~~iSGH~~~V~dv~W~ps-GeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVl 431 (764)
T KOG1063|consen 353 QEPVISGHVDGVKDVDWDPS-GEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVL 431 (764)
T ss_pred eccccccccccceeeeecCC-CCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceee
Confidence 34456799999999999999 8999999999999998754211 233445688889999998866678888888889
Q ss_pred EEEEccCC-------------------------------------------C----------------------------
Q 018858 83 KSFDVHMP-------------------------------------------A---------------------------- 91 (349)
Q Consensus 83 ~iwd~~~~-------------------------------------------~---------------------------- 91 (349)
++|+.... .
T Consensus 432 RvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~ 511 (764)
T KOG1063|consen 432 RVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQ 511 (764)
T ss_pred eeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHH
Confidence 99986210 0
Q ss_pred --cccceeeccCcccceEEEEEccCCCEEEEEcCCC-----cEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCC
Q 018858 92 --SWRPLESYNYNKEEINQIVCNPKSSFLACADDGG-----DVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLP 164 (349)
Q Consensus 92 --~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 164 (349)
....+..+.+|...|++++.+|+++++|+++... .|++|+..+....+.+. +|.-.|+.++|+|
T Consensus 512 ~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~-~HsLTVT~l~FSp-------- 582 (764)
T KOG1063|consen 512 NTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELE-GHSLTVTRLAFSP-------- 582 (764)
T ss_pred hccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheec-ccceEEEEEEECC--------
Confidence 0011112336778899999999999999998743 49999999988888899 9999999999999
Q ss_pred CCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEee
Q 018858 165 ENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME 244 (349)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (349)
++++|++.+.|.++.+|.......
T Consensus 583 ----------------------------dg~~LLsvsRDRt~sl~~~~~~~~---------------------------- 606 (764)
T KOG1063|consen 583 ----------------------------DGRYLLSVSRDRTVSLYEVQEDIK---------------------------- 606 (764)
T ss_pred ----------------------------CCcEEEEeecCceEEeeeeecccc----------------------------
Confidence 899999999999999999865310
Q ss_pred eeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceee-eccccccceEE
Q 018858 245 ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLI-KNINLNKKVNW 323 (349)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~v~~ 323 (349)
...-....+.|..-|.++.|+ |++.+++|+|.|.+|+||........ .+.. ....+...|+.
T Consensus 607 --------~e~~fa~~k~HtRIIWdcsW~---pde~~FaTaSRDK~VkVW~~~~~~d~------~i~~~a~~~~~~aVTA 669 (764)
T KOG1063|consen 607 --------DEFRFACLKAHTRIIWDCSWS---PDEKYFATASRDKKVKVWEEPDLRDK------YISRFACLKFSLAVTA 669 (764)
T ss_pred --------hhhhhccccccceEEEEcccC---cccceeEEecCCceEEEEeccCchhh------hhhhhchhccCCceee
Confidence 001122367899999999999 89999999999999999999876211 1111 45578899999
Q ss_pred EEeecCCCC----cEEEeeCCCeEEEeeC
Q 018858 324 LCTTPTESE----NLVVCDTSKVVKVYSI 348 (349)
Q Consensus 324 ~~~~~~~~~----~l~~~~~dg~i~iw~~ 348 (349)
+++.|.+.. .++.|-..|.|.+|..
T Consensus 670 v~~~~~~~~e~~~~vavGle~GeI~l~~~ 698 (764)
T KOG1063|consen 670 VAYLPVDHNEKGDVVAVGLEKGEIVLWRR 698 (764)
T ss_pred EEeeccccccccceEEEEecccEEEEEec
Confidence 999885432 5677779999999984
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-22 Score=157.23 Aligned_cols=297 Identities=15% Similarity=0.092 Sum_probs=211.5
Q ss_pred CeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCC------CcEEEEee-cCCCCeEEEEEecCCCEEEEEeCCC
Q 018858 8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRS------KDVQLVTD-VGNGPVTSLCFKSGNEDIIYVSSGK 80 (349)
Q Consensus 8 ~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg 80 (349)
.+.+.+|.+.|.++.|+.+ +++|++|+.|..+++|+++. .+++.... .|...|.+++|...+..+++|+.++
T Consensus 49 qKD~~~H~GCiNAlqFS~N-~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHN-DRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG 127 (609)
T ss_pred hhhhhhhccccceeeeccC-CeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence 3456789999999999998 89999999999999999753 35555444 3668999999999999999999999
Q ss_pred eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCce-Eece-eccccccceeEEEEccCC
Q 018858 81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC-LYKS-LRAGHSSICSSVQFIPWK 158 (349)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~-~~~~~~~~v~~~~~~~~~ 158 (349)
+|...|+++.+.+.... .....+.|..+..+|..+.|++.+.+|.|.+||.+... .... +..........+.|+|.
T Consensus 128 ~VI~HDiEt~qsi~V~~-~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~- 205 (609)
T KOG4227|consen 128 TVIKHDIETKQSIYVAN-ENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPE- 205 (609)
T ss_pred eeEeeecccceeeeeec-ccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCC-
Confidence 99999999864433322 22234689999999999999999999999999998554 2221 11134456777888884
Q ss_pred CCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCC------CCccceee
Q 018858 159 PWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTT------KPLKGSQS 232 (349)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~~~~~~~ 232 (349)
...+|++++..+-+.+||.+..+......... ....-...
T Consensus 206 ----------------------------------~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~ 251 (609)
T KOG4227|consen 206 ----------------------------------TPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSL 251 (609)
T ss_pred ----------------------------------CceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhhee
Confidence 67889999999999999999866544322221 12234678
Q ss_pred eeccccEEEEeeeeeecCceee---e-eeeeecCC-------CcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcc
Q 018858 233 TSKVNIRDAEMEILDQSGGKRL---H-LDYSVGGH-------TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG 301 (349)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~h-------~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 301 (349)
|+|+|..+.+.-....-..... . ++..+ .| ...+.++.|. +..-+++|+.+-.|++|.+.....
T Consensus 252 ~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~-D~N~~GY~N~~T~KS~~F~----~D~~v~tGSD~~~i~~WklP~~~d 326 (609)
T KOG4227|consen 252 WSPSGNQFMSIRRGKCPLYFDFISQRCFVLKS-DHNPNGYCNIKTIKSMTFI----DDYTVATGSDHWGIHIWKLPRAND 326 (609)
T ss_pred eCCCCCeehhhhccCCCEEeeeecccceeEec-cCCCCcceeeeeeeeeeee----cceeeeccCcccceEEEecCCCcc
Confidence 9999988774221111111110 0 11111 12 2356677776 556799999999999999875432
Q ss_pred ee------c--------ccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 302 VQ------T--------SINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 302 ~~------~--------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
.. . ......+..+.+|...++.+.|+| ...+|++.+-...+++|.
T Consensus 327 s~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~-H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 327 SYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQ-HNNLLVSSGVENSFKLWS 385 (609)
T ss_pred ccCccccCcchhhCchhheecceeEEEecccccccceeecC-CcceEeccchhhheeccc
Confidence 11 0 011234567789999999999988 555788888999999996
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-22 Score=152.45 Aligned_cols=246 Identities=15% Similarity=0.174 Sum_probs=183.6
Q ss_pred CCceeeeEEEEecCC----CceEEEeCCCCcEEEEECCC--CcE--EEEe-----ecCCCCeEEEEEec-CCCEEEEEeC
Q 018858 13 GHKATATCCIASRDR----PGFVASSGEDGCICWFDLRS--KDV--QLVT-----DVGNGPVTSLCFKS-GNEDIIYVSS 78 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~----~~~l~t~~~dg~i~vwd~~~--~~~--~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~ 78 (349)
.|.-+++.+.|.|+. .++|||++. .+++|.+.. .+. ...+ ..+..++++..|+. +.++|.+++-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 588899999999972 246777653 799999873 221 1111 23567899999987 6788999999
Q ss_pred CCeEEEEEccCCCcccceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCceEeceecc--ccccceeEEEEc
Q 018858 79 GKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYKSLRA--GHSSICSSVQFI 155 (349)
Q Consensus 79 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~ 155 (349)
|-+..|||++++........+-+|..+|..++|...+ +.||+.+.||.+++||+|..+--..+.+ ....+...++|+
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswn 251 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWN 251 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccC
Confidence 9999999999874434455677899999999999866 7889999999999999996543222220 224567788888
Q ss_pred cCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcC-CCeEEEEEccCceeeeecCCCCCCccceeeee
Q 018858 156 PWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG-DGVVDVINIESELNISRSKSTTKPLKGSQSTS 234 (349)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 234 (349)
++ +.+++|+-.. ...|.+.|++..
T Consensus 252 kq-----------------------------------DpnymATf~~dS~~V~iLDiR~P-------------------- 276 (364)
T KOG0290|consen 252 KQ-----------------------------------DPNYMATFAMDSNKVVILDIRVP-------------------- 276 (364)
T ss_pred cC-----------------------------------CchHHhhhhcCCceEEEEEecCC--------------------
Confidence 85 7788887554 457999999963
Q ss_pred ccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeec
Q 018858 235 KVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKN 314 (349)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 314 (349)
..++..+++|.+.|+.|+|.| .....++++|.|..+.+||+....... ...+++ ..
T Consensus 277 -------------------~tpva~L~~H~a~VNgIaWaP--hS~~hictaGDD~qaliWDl~q~~~~~--~~dPil-ay 332 (364)
T KOG0290|consen 277 -------------------CTPVARLRNHQASVNGIAWAP--HSSSHICTAGDDCQALIWDLQQMPREN--GEDPIL-AY 332 (364)
T ss_pred -------------------CcceehhhcCcccccceEecC--CCCceeeecCCcceEEEEecccccccC--CCCchh-hh
Confidence 266778999999999999997 556789999999999999998753210 000221 22
Q ss_pred cccccceEEEEeecCCCCcEEEeeCC
Q 018858 315 INLNKKVNWLCTTPTESENLVVCDTS 340 (349)
Q Consensus 315 ~~~~~~v~~~~~~~~~~~~l~~~~~d 340 (349)
...+.|+.+.|+|..+.+++.+...
T Consensus 333 -~a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 333 -TAGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred -hccceeeeeeecccCCCEEEEEecC
Confidence 2567899999998888888887543
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.2e-22 Score=151.97 Aligned_cols=237 Identities=18% Similarity=0.184 Sum_probs=180.9
Q ss_pred ceeeeEEEEe-------cCCCceEEEeCCCCcEEEEECCCCcEEEEeec--CC---CCeEEEEEecCCCEEEEEeCCCeE
Q 018858 15 KATATCCIAS-------RDRPGFVASSGEDGCICWFDLRSKDVQLVTDV--GN---GPVTSLCFKSGNEDIIYVSSGKEV 82 (349)
Q Consensus 15 ~~~i~~~~~~-------~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~--~~---~~v~~~~~~~~~~~l~~~~~dg~i 82 (349)
...|...+|- |+ ..++++.+.+.-|++||.-+|++..++.+ |. ....+++|+|||.+|++|- ...|
T Consensus 104 g~tvydy~wYs~M~s~qP~-t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krci 181 (406)
T KOG2919|consen 104 GETVYDYCWYSRMKSDQPS-TNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCI 181 (406)
T ss_pred CCEEEEEEeeeccccCCCc-cceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceE
Confidence 3567777775 55 67899999999999999999998877654 32 3456899999999987655 7789
Q ss_pred EEEEcc-CCCcccceeec----cCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEcc
Q 018858 83 KSFDVH-MPASWRPLESY----NYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 83 ~iwd~~-~~~~~~~~~~~----~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
++||+. .+..-....++ .+..+-+.+++|+|.. ..++.|+....+-||.-..+.++..+- +|.+.|+.++|.+
T Consensus 182 rvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg-gh~gGvThL~~~e 260 (406)
T KOG2919|consen 182 RVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG-GHGGGVTHLQWCE 260 (406)
T ss_pred EEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeec-ccCCCeeeEEecc
Confidence 999994 34322222221 2335678999999955 689999998899898888888888888 9999999999999
Q ss_pred CCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEc-CCCeEEEEEccCceeeeecCCCCCCccceeeeec
Q 018858 157 WKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESELNISRSKSTTKPLKGSQSTSK 235 (349)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (349)
+|+.|++|. .|-.|..||++...
T Consensus 261 ------------------------------------dGn~lfsGaRk~dkIl~WDiR~~~-------------------- 284 (406)
T KOG2919|consen 261 ------------------------------------DGNKLFSGARKDDKILCWDIRYSR-------------------- 284 (406)
T ss_pred ------------------------------------CcCeecccccCCCeEEEEeehhcc--------------------
Confidence 788888887 57899999999732
Q ss_pred cccEEEEeeeeeecCceeeeeeeeecCCCc-ceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeec
Q 018858 236 VNIRDAEMEILDQSGGKRLHLDYSVGGHTA-AASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKN 314 (349)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 314 (349)
.++..+..|.. .-..|.|. ..|++++|++|+.||.|++||++..- .....+
T Consensus 285 -------------------~pv~~L~rhv~~TNQRI~FD-ld~~~~~LasG~tdG~V~vwdlk~~g--------n~~sv~ 336 (406)
T KOG2919|consen 285 -------------------DPVYALERHVGDTNQRILFD-LDPKGEILASGDTDGSVRVWDLKDLG--------NEVSVT 336 (406)
T ss_pred -------------------chhhhhhhhccCccceEEEe-cCCCCceeeccCCCccEEEEecCCCC--------Cccccc
Confidence 45556666655 33344443 22899999999999999999999842 445566
Q ss_pred cccccceEEEEeecCCCCcEEEeeC
Q 018858 315 INLNKKVNWLCTTPTESENLVVCDT 339 (349)
Q Consensus 315 ~~~~~~v~~~~~~~~~~~~l~~~~~ 339 (349)
..|...++.++++|. =.++++++.
T Consensus 337 ~~~sd~vNgvslnP~-mpilatssG 360 (406)
T KOG2919|consen 337 GNYSDTVNGVSLNPI-MPILATSSG 360 (406)
T ss_pred ccccccccceecCcc-cceeeeccC
Confidence 778999999999984 335666654
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-21 Score=147.67 Aligned_cols=236 Identities=11% Similarity=0.059 Sum_probs=164.3
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCce
Q 018858 57 GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC 136 (349)
Q Consensus 57 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 136 (349)
....|..+.|+|.++.|++++.||++++||+..... ...-.|..++.+.+|.+ ...+++|+.||.|+.+|+.+++
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l----~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSL----KLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhh----hhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCc
Confidence 356899999999999999999999999999986522 22223578999999986 5679999999999999999887
Q ss_pred EeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCcee
Q 018858 137 LYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN 216 (349)
Q Consensus 137 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 216 (349)
..... .|..++.|+.+.+ ....+++|+.|++|++||.+....
T Consensus 87 ~~~ig--th~~~i~ci~~~~------------------------------------~~~~vIsgsWD~~ik~wD~R~~~~ 128 (323)
T KOG1036|consen 87 EDQIG--THDEGIRCIEYSY------------------------------------EVGCVISGSWDKTIKFWDPRNKVV 128 (323)
T ss_pred ceeec--cCCCceEEEEeec------------------------------------cCCeEEEcccCccEEEEecccccc
Confidence 65444 5999999999998 677899999999999999996322
Q ss_pred eeecCCCCCCccceeeeeccccEEEEeeeeee---cCceeeeeee--eecCCCcceEEEEEeeecCCccEEEEeeCCCeE
Q 018858 217 ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ---SGGKRLHLDY--SVGGHTAAASCVAFSMFGERGKYLISGGNDKLV 291 (349)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i 291 (349)
....... ..+.+ .+-.|..|++...... ...+...... .-..-+..+.++++- |++.=.++++-||.|
T Consensus 129 ~~~~d~~--kkVy~--~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~---pn~eGy~~sSieGRV 201 (323)
T KOG1036|consen 129 VGTFDQG--KKVYC--MDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALV---PNGEGYVVSSIEGRV 201 (323)
T ss_pred ccccccC--ceEEE--EeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEe---cCCCceEEEeecceE
Confidence 2222221 23333 3334444543111111 1111111111 111234578999999 777778889999999
Q ss_pred EEEecCCCcceecccccceeeeccccc---------cceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 292 KVWDCSRFQGVQTSINNDLLIKNINLN---------KKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 292 ~vwd~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.+=.++..+..+ .....+..|. .+|++++|+|. -+.++||+.||.|.+||+
T Consensus 202 avE~~d~s~~~~-----skkyaFkCHr~~~~~~~~~yPVNai~Fhp~-~~tfaTgGsDG~V~~Wd~ 261 (323)
T KOG1036|consen 202 AVEYFDDSEEAQ-----SKKYAFKCHRLSEKDTEIIYPVNAIAFHPI-HGTFATGGSDGIVNIWDL 261 (323)
T ss_pred EEEccCCchHHh-----hhceeEEeeecccCCceEEEEeceeEeccc-cceEEecCCCceEEEccC
Confidence 887666542222 1222333332 37999999995 458999999999999996
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-22 Score=161.86 Aligned_cols=241 Identities=15% Similarity=0.139 Sum_probs=182.9
Q ss_pred eeeEEEEecCCCceEEEeCCCCcEEEEECCCC--cE--EEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCc
Q 018858 17 TATCCIASRDRPGFVASSGEDGCICWFDLRSK--DV--QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPAS 92 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~--~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 92 (349)
.+.++.|...+.-.+++.+.|..+++|.-... +. +....+. .-.|++......++++|+..+.|+|||++.
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~--- 110 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRA--- 110 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHH---
Confidence 38889998762223334456778899974322 11 1222222 333444444457999999999999999984
Q ss_pred ccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCcc
Q 018858 93 WRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQ 172 (349)
Q Consensus 93 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 172 (349)
......+..|...|+++.++-...+||+++..|.|.|..+.++.....|.......++-+.|+|-
T Consensus 111 kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~s--------------- 175 (673)
T KOG4378|consen 111 KLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPS--------------- 175 (673)
T ss_pred HHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccc---------------
Confidence 34556677889999999999999999999999999999999988888887333556778889883
Q ss_pred ccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCce
Q 018858 173 CYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGK 252 (349)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (349)
...+|.+++.+|.|.+||.....
T Consensus 176 --------------------kr~lL~~asd~G~VtlwDv~g~s------------------------------------- 198 (673)
T KOG4378|consen 176 --------------------KRFLLSIASDKGAVTLWDVQGMS------------------------------------- 198 (673)
T ss_pred --------------------cceeeEeeccCCeEEEEeccCCC-------------------------------------
Confidence 34567789999999999998631
Q ss_pred eeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCC
Q 018858 253 RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESE 332 (349)
Q Consensus 253 ~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 332 (349)
....-...|..+-..|+|+| .+..+|++.+.|..|++||..+. ..........+...++|.+ +|.
T Consensus 199 --p~~~~~~~HsAP~~gicfsp--sne~l~vsVG~Dkki~~yD~~s~----------~s~~~l~y~~Plstvaf~~-~G~ 263 (673)
T KOG4378|consen 199 --PIFHASEAHSAPCRGICFSP--SNEALLVSVGYDKKINIYDIRSQ----------ASTDRLTYSHPLSTVAFSE-CGT 263 (673)
T ss_pred --cccchhhhccCCcCcceecC--CccceEEEecccceEEEeecccc----------cccceeeecCCcceeeecC-Cce
Confidence 22234457999999999997 67788999999999999999974 3333344566889999987 899
Q ss_pred cEEEeeCCCeEEEeeCC
Q 018858 333 NLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 333 ~l~~~~~dg~i~iw~~~ 349 (349)
+|++|...|.|..|||+
T Consensus 264 ~L~aG~s~G~~i~YD~R 280 (673)
T KOG4378|consen 264 YLCAGNSKGELIAYDMR 280 (673)
T ss_pred EEEeecCCceEEEEecc
Confidence 99999999999999985
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-21 Score=149.08 Aligned_cols=242 Identities=19% Similarity=0.281 Sum_probs=177.3
Q ss_pred eeEEEEecCCCceEEEeCCCCcEEEEECCCC----c----E----EEEeec-CCCCeEEEEEe-------cCCCEEEEEe
Q 018858 18 ATCCIASRDRPGFVASSGEDGCICWFDLRSK----D----V----QLVTDV-GNGPVTSLCFK-------SGNEDIIYVS 77 (349)
Q Consensus 18 i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~----~----~----~~~~~~-~~~~v~~~~~~-------~~~~~l~~~~ 77 (349)
...+.|+|| |.-|++-+.|..+.+|++... + . ..+++. ....|...+|- |+..++++.+
T Consensus 52 ~kgckWSPD-GSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 52 LKGCKWSPD-GSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hccceeCCC-CceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 456789999 888999999999999997521 1 0 111111 23567777775 6778899999
Q ss_pred CCCeEEEEEccCCCcccceeeccCccc---ceEEEEEccCCCEEEEEcCCCcEEEEEc-CCceEe---ceec---ccccc
Q 018858 78 SGKEVKSFDVHMPASWRPLESYNYNKE---EINQIVCNPKSSFLACADDGGDVKIIDI-RQHCLY---KSLR---AGHSS 147 (349)
Q Consensus 78 ~dg~i~iwd~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~dg~i~i~d~-~~~~~~---~~~~---~~~~~ 147 (349)
.+.-|++||.-+++.......+. |.+ ...+++|+|||.+|++|. ...|++||+ |.|... .++. .+..+
T Consensus 131 r~~PIh~wdaftG~lraSy~~yd-h~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~g 208 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYD-HQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG 208 (406)
T ss_pred ccCceeeeeccccccccchhhhh-hHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccc
Confidence 99999999999886554444332 222 456899999999999875 468999999 454321 1221 13356
Q ss_pred ceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCc
Q 018858 148 ICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPL 227 (349)
Q Consensus 148 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 227 (349)
-+.+++|+|. +...+++|+...++-||.-...
T Consensus 209 iisc~a~sP~-----------------------------------~~~~~a~gsY~q~~giy~~~~~------------- 240 (406)
T KOG2919|consen 209 IISCFAFSPM-----------------------------------DSKTLAVGSYGQRVGIYNDDGR------------- 240 (406)
T ss_pred eeeeeeccCC-----------------------------------CCcceeeecccceeeeEecCCC-------------
Confidence 6788888884 6678999999888888876653
Q ss_pred cceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEee-CCCeEEEEecCCCcceeccc
Q 018858 228 KGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG-NDKLVKVWDCSRFQGVQTSI 306 (349)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~ 306 (349)
.++..+.+|.+.|+.+.|. ++|+.|.+|+ .|-.|-.||++...
T Consensus 241 ---------------------------~pl~llggh~gGvThL~~~---edGn~lfsGaRk~dkIl~WDiR~~~------ 284 (406)
T KOG2919|consen 241 ---------------------------RPLQLLGGHGGGVTHLQWC---EDGNKLFSGARKDDKILCWDIRYSR------ 284 (406)
T ss_pred ---------------------------CceeeecccCCCeeeEEec---cCcCeecccccCCCeEEEEeehhcc------
Confidence 5666777999999999999 8999999998 57889999999864
Q ss_pred ccceeeecccccc-ceEEEE--eecCCCCcEEEeeCCCeEEEeeCC
Q 018858 307 NNDLLIKNINLNK-KVNWLC--TTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 307 ~~~~~~~~~~~~~-~v~~~~--~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.++..+..|.+ .-..|. ..| ++++|++|+.||.|++||+.
T Consensus 285 --~pv~~L~rhv~~TNQRI~FDld~-~~~~LasG~tdG~V~vwdlk 327 (406)
T KOG2919|consen 285 --DPVYALERHVGDTNQRILFDLDP-KGEILASGDTDGSVRVWDLK 327 (406)
T ss_pred --chhhhhhhhccCccceEEEecCC-CCceeeccCCCccEEEEecC
Confidence 44455555554 222333 334 78899999999999999973
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.2e-22 Score=164.08 Aligned_cols=271 Identities=13% Similarity=0.160 Sum_probs=174.2
Q ss_pred EEEec--CCCceEEEeCCCCcEEEEECCCCcE------EEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCc
Q 018858 21 CIASR--DRPGFVASSGEDGCICWFDLRSKDV------QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPAS 92 (349)
Q Consensus 21 ~~~~~--~~~~~l~t~~~dg~i~vwd~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 92 (349)
..|++ +...+|+.+.+||.|.++|.....- +.....|...|..+.|.|....|++++.|.+++.||+++.+.
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l 134 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL 134 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence 45554 3356799999999999999764322 355667999999999999777899999999999999997654
Q ss_pred ccceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEE---ccCCCCCCCCCCCC
Q 018858 93 WRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQF---IPWKPWEGLPENNG 168 (349)
Q Consensus 93 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~~~~~~~ 168 (349)
... ..+.+|...|.+++|.|.. ..|++|+.||.|.|||++-... ..+. .....++...= .|.... ...
T Consensus 135 ~G~-~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~-d~~e-~~~~~~~~~~n~~ptpskp~-----~kr 206 (720)
T KOG0321|consen 135 VGG-RLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGV-DALE-EFDNRIYGRHNTAPTPSKPL-----KKR 206 (720)
T ss_pred ecc-eeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccch-hhHH-HHhhhhhccccCCCCCCchh-----hcc
Confidence 332 2467889999999999965 7889999999999999984431 1111 01111111100 010000 000
Q ss_pred CCccccCC----ceeEEeecCcccccCCCCcEEEEEcC-CCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 169 NAGQCYNP----AFVHAIAIPDADMLDKTNKICVVAKG-DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 169 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
...-.... ..|..+.|. |...||+++. |+.|++||+++..........
T Consensus 207 ~~k~kA~s~ti~ssvTvv~fk-------De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~-------------------- 259 (720)
T KOG0321|consen 207 IRKWKAASNTIFSSVTVVLFK-------DESTLASAGAADSTIKVWDLRKNYTAYRQEPR-------------------- 259 (720)
T ss_pred ccccccccCceeeeeEEEEEe-------ccceeeeccCCCcceEEEeecccccccccCCC--------------------
Confidence 00000001 113333333 6778888886 999999999985432222111
Q ss_pred eeeeecCceeeeeeeeecCC---CcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccc
Q 018858 244 EILDQSGGKRLHLDYSVGGH---TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKK 320 (349)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~h---~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (349)
....+..| ...+.++..+ ..|.+|.+.+.|+.|++|++.+... .++..+.++...
T Consensus 260 ------------~~~~~~t~skrs~G~~nL~lD---ssGt~L~AsCtD~sIy~ynm~s~s~-------sP~~~~sg~~~~ 317 (720)
T KOG0321|consen 260 ------------GSDKYPTHSKRSVGQVNLILD---SSGTYLFASCTDNSIYFYNMRSLSI-------SPVAEFSGKLNS 317 (720)
T ss_pred ------------cccCccCcccceeeeEEEEec---CCCCeEEEEecCCcEEEEeccccCc-------CchhhccCcccc
Confidence 11222223 2356777777 6788888888899999999998643 333444443322
Q ss_pred eEEE--EeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 321 VNWL--CTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 321 v~~~--~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
-..+ ..+| ++.+|++|+.|...++|.++
T Consensus 318 sf~vks~lSp-d~~~l~SgSsd~~ayiw~vs 347 (720)
T KOG0321|consen 318 SFYVKSELSP-DDCSLLSGSSDEQAYIWVVS 347 (720)
T ss_pred eeeeeeecCC-CCceEeccCCCcceeeeeec
Confidence 1111 2334 88899999999999999864
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.2e-23 Score=166.24 Aligned_cols=259 Identities=12% Similarity=0.114 Sum_probs=188.1
Q ss_pred CCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCC--------CcEEEEeecCCCCeEEEEEecCCCEEEEEeC
Q 018858 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRS--------KDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS 78 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 78 (349)
...++..|.+.|+.++|.|. ...|++++.||+|.+|+++. -+++.++.+|.++|.|+++.++++++++|+.
T Consensus 286 ik~tl~s~~d~ir~l~~~~s-ep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~ 364 (577)
T KOG0642|consen 286 IKFTLRSHDDCIRALAFHPS-EPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGI 364 (577)
T ss_pred eeeeeecchhhhhhhhcCCC-CCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeecc
Confidence 33477889999999999998 78999999999999999932 2457899999999999999999999999999
Q ss_pred CCeEEEEEccCCCc-------ccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceecc-cccccee
Q 018858 79 GKEVKSFDVHMPAS-------WRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA-GHSSICS 150 (349)
Q Consensus 79 dg~i~iwd~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~ 150 (349)
||+|+.|++..... ......+.+|.+.++.+++++...+|++++.||++++|+.....+ ..+.. ...+...
T Consensus 365 Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 365 DGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred CceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 99999997653211 122345778999999999999999999999999999999875554 22320 1222334
Q ss_pred EEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccce
Q 018858 151 SVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGS 230 (349)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 230 (349)
.+.+-.. +-.+.++...-+.-.+++.+.......+...
T Consensus 444 svd~~ss-----------------------------------~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~------- 481 (577)
T KOG0642|consen 444 SVDRTSS-----------------------------------RPAHSLASFRFGYTSIDDMEVVSDLLIFESS------- 481 (577)
T ss_pred eEeeccc-----------------------------------hhHhhhhhcccccccchhhhhhhheeecccc-------
Confidence 4444331 1122222222222233333332111111100
Q ss_pred eeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccce
Q 018858 231 QSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDL 310 (349)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 310 (349)
......-...++.+... |...+.+++.+|+.|+++|..++ .+
T Consensus 482 --------------------------~~~~~~~~~~in~vVs~---~~~~~~~~~hed~~Ir~~dn~~~---------~~ 523 (577)
T KOG0642|consen 482 --------------------------ASPGPRRYPQINKVVSH---PTADITFTAHEDRSIRFFDNKTG---------KI 523 (577)
T ss_pred --------------------------CCCcccccCccceEEec---CCCCeeEecccCCceeccccccc---------cc
Confidence 00000112356777777 88899999999999999999998 78
Q ss_pred eeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 311 LIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 311 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
+.....|...++++++.| +|-+|++++.||.+++|++
T Consensus 524 l~s~~a~~~svtslai~~-ng~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 524 LHSMVAHKDSVTSLAIDP-NGPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred chheeeccceecceeecC-CCceEEeecCCceeehhhc
Confidence 888899999999999988 6779999999999999986
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-22 Score=158.92 Aligned_cols=222 Identities=16% Similarity=0.242 Sum_probs=166.5
Q ss_pred ECCCCcEEEEeecCCCCeEEEEEecCCC--EEEEEeCCCeEEEEEccCC-CcccceeeccCcccceEEEEEccCC-CEEE
Q 018858 44 DLRSKDVQLVTDVGNGPVTSLCFKSGNE--DIIYVSSGKEVKSFDVHMP-ASWRPLESYNYNKEEINQIVCNPKS-SFLA 119 (349)
Q Consensus 44 d~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~ 119 (349)
|+.+.......+.+.++|++++|+|..+ .+|+|...|.|-+||+.+. +....+..+..|..+|.++.|+|.. ..++
T Consensus 172 ~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ 251 (498)
T KOG4328|consen 172 DLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIY 251 (498)
T ss_pred ccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhee
Confidence 3334444556677889999999999654 6788888999999999632 2233445566788999999999965 7899
Q ss_pred EEcCCCcEEEEEcCCceEeceecc-ccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEE
Q 018858 120 CADDGGDVKIIDIRQHCLYKSLRA-GHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV 198 (349)
Q Consensus 120 ~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 198 (349)
+.+.||+|++-|++....-..+.. .....+..+.|+. +...++
T Consensus 252 ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~------------------------------------e~~~vl 295 (498)
T KOG4328|consen 252 SSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSA------------------------------------ESRSVL 295 (498)
T ss_pred eeccCceeeeeeecchhhHHHhhcCccceeeeeccccC------------------------------------CCccEE
Confidence 999999999999986543222220 2344556666666 556666
Q ss_pred EEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCC
Q 018858 199 VAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGER 278 (349)
Q Consensus 199 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~ 278 (349)
.+..=|.+.+||++.+. .....+.-|...|..++++| -.
T Consensus 296 ~~~~~G~f~~iD~R~~~---------------------------------------s~~~~~~lh~kKI~sv~~NP--~~ 334 (498)
T KOG4328|consen 296 FGDNVGNFNVIDLRTDG---------------------------------------SEYENLRLHKKKITSVALNP--VC 334 (498)
T ss_pred EeecccceEEEEeecCC---------------------------------------ccchhhhhhhcccceeecCC--CC
Confidence 77766799999999741 22345566888999999997 45
Q ss_pred ccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 279 GKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 279 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
..+|+|+|.|++++|||++...... .++.....|...|.+..|+|.++. |+|.+.|..|+|||.
T Consensus 335 p~~laT~s~D~T~kIWD~R~l~~K~-----sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~ds 398 (498)
T KOG4328|consen 335 PWFLATASLDQTAKIWDLRQLRGKA-----SPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDS 398 (498)
T ss_pred chheeecccCcceeeeehhhhcCCC-----CcceecccccceeeeeEEcCCCCc-eEeeccCCceEEeec
Confidence 5789999999999999998753221 123456689999999999997665 999999999999985
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.5e-22 Score=144.26 Aligned_cols=243 Identities=16% Similarity=0.207 Sum_probs=175.1
Q ss_pred ceeeeEEEEecCCCceEEEeCCCCcEEEEECCC---------C-cEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRS---------K-DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~---------~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
...|.+-+++|. +++|+.|..+|.|.+..+.+ + ..+...++|.++++.++|. .++|++|+ ||.|+-
T Consensus 10 ~~tvf~qa~sp~-~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~g 85 (325)
T KOG0649|consen 10 YNTVFAQAISPS-KQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYG 85 (325)
T ss_pred HHHHHHHhhCCc-ceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEE
Confidence 456777789998 89999999999999998753 2 2355668999999999998 45677777 699999
Q ss_pred EEccCCCc----ccceee-ccCc-----ccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEE
Q 018858 85 FDVHMPAS----WRPLES-YNYN-----KEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQF 154 (349)
Q Consensus 85 wd~~~~~~----~~~~~~-~~~~-----~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 154 (349)
|..+.... .+.... .+.+ -..|+++-..|..+-++.++.|+.++.||+++|+..++++ +|.+.+.++.-
T Consensus 86 w~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r-GHtDYvH~vv~ 164 (325)
T KOG0649|consen 86 WEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR-GHTDYVHSVVG 164 (325)
T ss_pred eeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc-CCcceeeeeee
Confidence 98764321 111100 0111 2357889999988878888899999999999999999999 99999999987
Q ss_pred ccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeee
Q 018858 155 IPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTS 234 (349)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 234 (349)
.. ....+++|++||++|+||.++.++.......
T Consensus 165 R~------------------------------------~~~qilsG~EDGtvRvWd~kt~k~v~~ie~y----------- 197 (325)
T KOG0649|consen 165 RN------------------------------------ANGQILSGAEDGTVRVWDTKTQKHVSMIEPY----------- 197 (325)
T ss_pred cc------------------------------------cCcceeecCCCccEEEEeccccceeEEeccc-----------
Confidence 55 4567889999999999999998766555433
Q ss_pred ccccEEEEeeeeeecCceeeeeeeeecCCC-cceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeee
Q 018858 235 KVNIRDAEMEILDQSGGKRLHLDYSVGGHT-AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIK 313 (349)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 313 (349)
+....++.|. ..|-+++. +..+|++|+. ..+.+|.+++.+.. .
T Consensus 198 --------------------k~~~~lRp~~g~wigala~-----~edWlvCGgG-p~lslwhLrsse~t----------~ 241 (325)
T KOG0649|consen 198 --------------------KNPNLLRPDWGKWIGALAV-----NEDWLVCGGG-PKLSLWHLRSSEST----------C 241 (325)
T ss_pred --------------------cChhhcCcccCceeEEEec-----cCceEEecCC-CceeEEeccCCCce----------E
Confidence 1112233343 35777775 4568888774 67999999986431 2
Q ss_pred ccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 314 NINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 314 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
......++..+.|.. +.+++++..+.|.-|.+
T Consensus 242 vfpipa~v~~v~F~~---d~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 242 VFPIPARVHLVDFVD---DCVLIGGEGNHVQSYTL 273 (325)
T ss_pred EEecccceeEeeeec---ceEEEeccccceeeeee
Confidence 233445566666733 36777776666766654
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-21 Score=145.71 Aligned_cols=219 Identities=16% Similarity=0.229 Sum_probs=163.4
Q ss_pred ecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCC-CcccceeeccCcccceEEEEEcc--CCCEEEEEcCCCcEEEEE
Q 018858 55 DVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP-ASWRPLESYNYNKEEINQIVCNP--KSSFLACADDGGDVKIID 131 (349)
Q Consensus 55 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d 131 (349)
.+|..-|.++.|.+.|+++|+|+.|++|+|||.+.. .........+.|.+.|..+.|.+ -|+.+|+++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 357788999999999999999999999999997543 23445566788999999999965 479999999999999997
Q ss_pred cC---------CceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcC
Q 018858 132 IR---------QHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG 202 (349)
Q Consensus 132 ~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (349)
-. ......++. .....|+.+.|.|. .-|-.|++++.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~-DsrssV~DV~FaP~----------------------------------hlGLklA~~~a 134 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLV-DSRSSVTDVKFAPK----------------------------------HLGLKLAAASA 134 (361)
T ss_pred ecccccccccceeEEEEEee-cCCcceeEEEecch----------------------------------hcceEEEEecc
Confidence 52 112334455 56678889999882 14788999999
Q ss_pred CCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeee-------cCCCcceEEEEEeee
Q 018858 203 DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSV-------GGHTAAASCVAFSMF 275 (349)
Q Consensus 203 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~h~~~i~~i~~~~~ 275 (349)
||.+|||+........ .+.+...+ ..+..+-.|+.|+|.
T Consensus 135 DG~lRIYEA~dp~nLs----------------------------------~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~s 180 (361)
T KOG2445|consen 135 DGILRIYEAPDPMNLS----------------------------------QWTLQHEIQNVIDPPGKNKQPCFCVSWNPS 180 (361)
T ss_pred CcEEEEEecCCccccc----------------------------------cchhhhhhhhccCCcccccCcceEEeeccc
Confidence 9999999987531111 11222222 235567789999853
Q ss_pred cCCccEEEEeeCC-----CeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCC---cEEEeeCCCeEEEee
Q 018858 276 GERGKYLISGGND-----KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESE---NLVVCDTSKVVKVYS 347 (349)
Q Consensus 276 ~~~~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~l~~~~~dg~i~iw~ 347 (349)
.-...+||.|+.+ +.++||......... ..+..+.+|..+|+.++|.|.-|+ .|++++.|| |+||+
T Consensus 181 r~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw-----~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~ 254 (361)
T KOG2445|consen 181 RMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKW-----LKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFK 254 (361)
T ss_pred cccCceEEEEcccCCccccceEEEEecCCccee-----eeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEE
Confidence 3345688888765 589999887754222 344566699999999999996654 699999999 99998
Q ss_pred C
Q 018858 348 I 348 (349)
Q Consensus 348 ~ 348 (349)
+
T Consensus 255 v 255 (361)
T KOG2445|consen 255 V 255 (361)
T ss_pred E
Confidence 6
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-21 Score=152.66 Aligned_cols=209 Identities=11% Similarity=0.097 Sum_probs=161.0
Q ss_pred eeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC-------cEEEEeecCCCCeEEEEEecC-CCEEEEEeCCCe
Q 018858 10 RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK-------DVQLVTDVGNGPVTSLCFKSG-NEDIIYVSSGKE 81 (349)
Q Consensus 10 ~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~ 81 (349)
.+.||+++|..++|+|.+...+|+|+.|.+|.||++..+ +++..+.+|...|--++|+|. .+.|++++.|..
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 457999999999999988899999999999999998754 346788999999999999995 456889999999
Q ss_pred EEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceecccccc-ceeEEEEccCCCC
Q 018858 82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSS-ICSSVQFIPWKPW 160 (349)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~ 160 (349)
|.+|++.+++.... +. |.+.|+++.|+.+|.+|++.+.|+.|+|||.++++++.+-. +|.+ .-..+.|..
T Consensus 156 v~iWnv~tgeali~---l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~-~heG~k~~Raifl~---- 226 (472)
T KOG0303|consen 156 VSIWNVGTGEALIT---LD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGV-AHEGAKPARAIFLA---- 226 (472)
T ss_pred EEEEeccCCceeee---cC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecc-cccCCCcceeEEec----
Confidence 99999999864433 33 78999999999999999999999999999999999988876 6654 233444555
Q ss_pred CCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEc---CCCeEEEEEccCceeeeecCCCCCCccceeeeeccc
Q 018858 161 EGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK---GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVN 237 (349)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (349)
++..+.+|. .+..+-+||..+-.
T Consensus 227 --------------------------------~g~i~tTGfsr~seRq~aLwdp~nl~---------------------- 252 (472)
T KOG0303|consen 227 --------------------------------SGKIFTTGFSRMSERQIALWDPNNLE---------------------- 252 (472)
T ss_pred --------------------------------cCceeeeccccccccceeccCccccc----------------------
Confidence 677555553 46789999987631
Q ss_pred cEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEee-CCCeEEEEecCCCc
Q 018858 238 IRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG-NDKLVKVWDCSRFQ 300 (349)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~ 300 (349)
.......+... ..|.---|. +|.++++.+| .|+.||.|.+.+..
T Consensus 253 ---------------eP~~~~elDtS-nGvl~PFyD---~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 253 ---------------EPIALQELDTS-NGVLLPFYD---PDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ---------------CcceeEEeccC-CceEEeeec---CCCCEEEEEecCCcceEEEEecCCC
Confidence 11222334332 234333455 7777776554 79999999998753
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=146.60 Aligned_cols=234 Identities=16% Similarity=0.139 Sum_probs=170.8
Q ss_pred cCCCCeeee-CCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcE-EEEee-----cCCCCeEEEEEec--CCCEEE
Q 018858 4 AEAKPRRLR-GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV-QLVTD-----VGNGPVTSLCFKS--GNEDII 74 (349)
Q Consensus 4 ~~~~~~~l~-~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~-~~~~~-----~~~~~v~~~~~~~--~~~~l~ 74 (349)
+.+++..|. .|-+.|.|+.|.|+ +..+++-. |..|.+|+++.... ...+. .+....++-+|+| +++.++
T Consensus 111 tlE~v~~Ldteavg~i~cvew~Pn-s~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~ 188 (370)
T KOG1007|consen 111 TLECVASLDTEAVGKINCVEWEPN-SDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVA 188 (370)
T ss_pred hhhHhhcCCHHHhCceeeEEEcCC-CCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEE
Confidence 346667776 56679999999997 78888766 78999999987665 33332 2455677888998 777777
Q ss_pred EEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcC-CceEeceeccccccceeEE
Q 018858 75 YVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIR-QHCLYKSLRAGHSSICSSV 152 (349)
Q Consensus 75 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~v~~~ 152 (349)
+.+ |++++.||+++.+....+ -.+|...|..+.|+|+. .+|++++.||.|++||++ +..++.++. +|...|.++
T Consensus 189 tt~-d~tl~~~D~RT~~~~~sI--~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~-~HsHWvW~V 264 (370)
T KOG1007|consen 189 TTS-DSTLQFWDLRTMKKNNSI--EDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP-GHSHWVWAV 264 (370)
T ss_pred EeC-CCcEEEEEccchhhhcch--hhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC-CCceEEEEE
Confidence 766 899999999986544444 34577789999999976 567899999999999999 456788888 999999999
Q ss_pred EEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeee---ecCCCCCCc--
Q 018858 153 QFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS---RSKSTTKPL-- 227 (349)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~~-- 227 (349)
.|+|. ..+++++|+.|..|.+|...+-.... .........
T Consensus 265 Rfn~~-----------------------------------hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~ 309 (370)
T KOG1007|consen 265 RFNPE-----------------------------------HDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDE 309 (370)
T ss_pred EecCc-----------------------------------cceEEEecCCCceeEEEeccccccccccccccccccCcch
Confidence 99994 57888999999999999876521111 000000000
Q ss_pred --cceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCC
Q 018858 228 --KGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR 298 (349)
Q Consensus 228 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 298 (349)
......- .-..+.++..|+..|++++|+. .|.-.+|+-+.||.+.|=.+..
T Consensus 310 dseer~kpL------------------~dg~l~tydehEDSVY~~aWSs--adPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 310 DSEERVKPL------------------QDGQLETYDEHEDSVYALAWSS--ADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred hhHHhcccc------------------cccccccccccccceEEEeecc--CCCeeEEEeccCceEEeecCCh
Confidence 0000001 1134457888999999999994 4555778889999999877665
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.1e-21 Score=142.11 Aligned_cols=257 Identities=12% Similarity=0.072 Sum_probs=184.6
Q ss_pred CCeeeeCCceeeeEEEEec--CCCceEEEeCC----CCcEEEEECC--CCcEEEEe-ecCCCCeEEEEEecCCC-----E
Q 018858 7 KPRRLRGHKATATCCIASR--DRPGFVASSGE----DGCICWFDLR--SKDVQLVT-DVGNGPVTSLCFKSGNE-----D 72 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~--~~~~~l~t~~~----dg~i~vwd~~--~~~~~~~~-~~~~~~v~~~~~~~~~~-----~ 72 (349)
.+..+..+ -+++++.|+. +...+|+.|+. .+.|.|-.+. +++.+..- ..|.-+++.+.|.|+.. .
T Consensus 37 eiy~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdl 115 (364)
T KOG0290|consen 37 EIYTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDL 115 (364)
T ss_pred eEEEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcch
Confidence 34444432 4678888883 33456888764 3456655443 44433221 24888999999999763 3
Q ss_pred EEEEeCCCeEEEEEccCCC-cccceee-----ccCcccceEEEEEcc-CCCEEEEEcCCCcEEEEEcCCce---Eeceec
Q 018858 73 IIYVSSGKEVKSFDVHMPA-SWRPLES-----YNYNKEEINQIVCNP-KSSFLACADDGGDVKIIDIRQHC---LYKSLR 142 (349)
Q Consensus 73 l~~~~~dg~i~iwd~~~~~-~~~~~~~-----~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~ 142 (349)
||++ +..+++|.+.... ....... -..+..+++++.|+. +-+++.+++-|-+..|||++++. +..++-
T Consensus 116 LATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLI 193 (364)
T KOG0290|consen 116 LATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLI 193 (364)
T ss_pred hhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEE
Confidence 4444 3569999987421 1111111 123456899999987 45889999999999999999763 355566
Q ss_pred cccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCC
Q 018858 143 AGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS 222 (349)
Q Consensus 143 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 222 (349)
.|...|..++|... .-+.|++.+.||.+|+||++....
T Consensus 194 -AHDKEV~DIaf~~~-----------------------------------s~~~FASvgaDGSvRmFDLR~leH------ 231 (364)
T KOG0290|consen 194 -AHDKEVYDIAFLKG-----------------------------------SRDVFASVGADGSVRMFDLRSLEH------ 231 (364)
T ss_pred -ecCcceeEEEeccC-----------------------------------ccceEEEecCCCcEEEEEeccccc------
Confidence 79999999999873 457899999999999999996321
Q ss_pred CCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCC-CeEEEEecCCCcc
Q 018858 223 TTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND-KLVKVWDCSRFQG 301 (349)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d-~~i~vwd~~~~~~ 301 (349)
-..+++-.....+...++|++ .|-+|+|+-..| ..|.|-|++...
T Consensus 232 -------------------------------STIIYE~p~~~~pLlRLswnk--qDpnymATf~~dS~~V~iLDiR~P~- 277 (364)
T KOG0290|consen 232 -------------------------------STIIYEDPSPSTPLLRLSWNK--QDPNYMATFAMDSNKVVILDIRVPC- 277 (364)
T ss_pred -------------------------------ceEEecCCCCCCcceeeccCc--CCchHHhhhhcCCceEEEEEecCCC-
Confidence 122233233245778899986 566788887765 679999999864
Q ss_pred eecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 302 VQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
..+..+.+|.+.|+.++|.|..+..|.+||+|..+-+||+.
T Consensus 278 -------tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~ 318 (364)
T KOG0290|consen 278 -------TPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQ 318 (364)
T ss_pred -------cceehhhcCcccccceEecCCCCceeeecCCcceEEEEecc
Confidence 56778899999999999999888999999999999999984
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-22 Score=177.94 Aligned_cols=217 Identities=13% Similarity=0.120 Sum_probs=172.4
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEee--cCCCCeEEEEEecCC-CEEEEEeCCCe
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD--VGNGPVTSLCFKSGN-EDIIYVSSGKE 81 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~-~~l~~~~~dg~ 81 (349)
.+.+.++..|++.|..+.|++..+++||+|+.||.|.|||+.+.+...+.. ...+.|.+++|+..- ..|++++.+|.
T Consensus 106 ~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~ 185 (1049)
T KOG0307|consen 106 EEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGR 185 (1049)
T ss_pred hHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCC
Confidence 356778889999999999999977899999999999999998765444332 245789999998754 45778888999
Q ss_pred EEEEEccCCCcccceeeccCcccceEEEEEccCC-CEEEEEcCCC---cEEEEEcCC-ceEeceeccccccceeEEEEcc
Q 018858 82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGG---DVKIIDIRQ-HCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg---~i~i~d~~~-~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
+.|||++..+.+..+..... ...+..++|+|+. ..++++++|. .|.+||+|. ...++.+. +|...|.++.|++
T Consensus 186 ~~iWDlr~~~pii~ls~~~~-~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~-~H~~GilslsWc~ 263 (1049)
T KOG0307|consen 186 AVIWDLRKKKPIIKLSDTPG-RMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILE-GHQRGILSLSWCP 263 (1049)
T ss_pred ceeccccCCCcccccccCCC-ccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhc-ccccceeeeccCC
Confidence 99999997543333333221 2457899999987 5666666554 499999994 45677887 9999999999999
Q ss_pred CCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeecc
Q 018858 157 WKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKV 236 (349)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (349)
. |..+|++++.|++|.+|+.+++
T Consensus 264 ~-----------------------------------D~~lllSsgkD~~ii~wN~~tg---------------------- 286 (1049)
T KOG0307|consen 264 Q-----------------------------------DPRLLLSSGKDNRIICWNPNTG---------------------- 286 (1049)
T ss_pred C-----------------------------------CchhhhcccCCCCeeEecCCCc----------------------
Confidence 5 6789999999999999999986
Q ss_pred ccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCc
Q 018858 237 NIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ 300 (349)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 300 (349)
+.+..+......+..+.|+| .+-..+++++-||.|.||.+....
T Consensus 287 ------------------Evl~~~p~~~nW~fdv~w~p--r~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 287 ------------------EVLGELPAQGNWCFDVQWCP--RNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ------------------eEeeecCCCCcceeeeeecC--CCcchhhhheeccceeeeeeecCC
Confidence 55666666677899999995 344488889999999999998765
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.7e-20 Score=155.63 Aligned_cols=291 Identities=15% Similarity=0.161 Sum_probs=202.5
Q ss_pred CCceeeeEEEEecCCCceEEEeCCCCcEEEEECCC--C--cEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 018858 13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRS--K--DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVH 88 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~--~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 88 (349)
.|+..++|.+++|. ++++++|..||.|.+|.--. . .....+.-|...|.+++|+++|.+|++|+..+.+.+|.+.
T Consensus 203 ~Htf~~t~~~~spn-~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 203 HHTFNITCVALSPN-ERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhcccceeEEeccc-cceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence 47777999999998 89999999999999997432 1 2245677788999999999999999999999999999999
Q ss_pred CCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccc-----------cccceeEEEEccC
Q 018858 89 MPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAG-----------HSSICSSVQFIPW 157 (349)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----------~~~~v~~~~~~~~ 157 (349)
+++ .+.+..+ ...|..+.++||+.+.+....|..|.+....+.....++. + ..+-.+.++++|
T Consensus 282 T~~-kqfLPRL---gs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIs-gi~~~~~~~k~~~~~l~t~~~idp- 355 (792)
T KOG1963|consen 282 TGK-KQFLPRL---GSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTIS-GIKPPTPSTKTRPQSLTTGVSIDP- 355 (792)
T ss_pred CCC-ccccccc---CCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhcc-CccCCCccccccccccceeEEEcC-
Confidence 876 3444444 5789999999999999999999999999876554433332 1 122334455555
Q ss_pred CCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCC----C------CCCc
Q 018858 158 KPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS----T------TKPL 227 (349)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~------~~~~ 227 (349)
..+.++-.+..|.|.+||+.+...+..+.. . ..-.
T Consensus 356 -----------------------------------r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~ 400 (792)
T KOG1963|consen 356 -----------------------------------RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVG 400 (792)
T ss_pred -----------------------------------CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEe
Confidence 566778888999999999988665442211 1 1223
Q ss_pred cceeeeeccccEEEEeeeeeecC-c----------------eeeeee-eeecCCCcceEEEEEeeecCCccEEEEeeCCC
Q 018858 228 KGSQSTSKVNIRDAEMEILDQSG-G----------------KRLHLD-YSVGGHTAAASCVAFSMFGERGKYLISGGNDK 289 (349)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~-~----------------~~~~~~-~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~ 289 (349)
+..++.+..|.++++...+.... . ....+. .....|...+....+.+. +....+++++.||
T Consensus 401 itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~-~rs~~~vta~~dg 479 (792)
T KOG1963|consen 401 ITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNP-TRSVRCVTASVDG 479 (792)
T ss_pred eeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecC-cccceeEEeccCC
Confidence 45667777788888743321110 0 011111 122356665555555431 2233899999999
Q ss_pred eEEEEecCCCcceeccccccee-eeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 290 LVKVWDCSRFQGVQTSINNDLL-IKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 290 ~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.++||-+...+........... .....|..++++.+|+. || .+++++.|++|.+||-
T Consensus 480 ~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~-dG-slla~s~~~~Itiwd~ 537 (792)
T KOG1963|consen 480 DFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQ-DG-SLLAVSFDDTITIWDY 537 (792)
T ss_pred eEEEEEEecccccCcCccceEEeeeeccccCcccchhhcC-CC-cEEEEecCCEEEEecC
Confidence 9999999655443322222222 12224888999999966 78 6888899999999984
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.8e-22 Score=158.84 Aligned_cols=295 Identities=16% Similarity=0.118 Sum_probs=217.3
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEe-ecCCCCeEEEEEec--CCCEEEEEeCCCe
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVT-DVGNGPVTSLCFKS--GNEDIIYVSSGKE 81 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~~~~~dg~ 81 (349)
..+...|..|.+.|..+.|+.. |..|++|+.|..+.+||...++....+ .+|...|....|-| +...+++++.||.
T Consensus 132 ~~l~~kL~~H~GcVntV~FN~~-Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq 210 (559)
T KOG1334|consen 132 LRLQKKLNKHKGCVNTVHFNQR-GDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ 210 (559)
T ss_pred hhhhhcccCCCCccceeeeccc-CceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCc
Confidence 3456778899999999999998 899999999999999999988875555 46888888878877 3456999999999
Q ss_pred EEEEEccCCCcccceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCceEeceec--ccccc---ceeEEEEc
Q 018858 82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYKSLR--AGHSS---ICSSVQFI 155 (349)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~---~v~~~~~~ 155 (349)
+++=.+.........+.+..|.+.|.-++.-|+. .-|.+++.|+.+.-+|++.+.+...+. ..+.. ..+.++..
T Consensus 211 vr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~ 290 (559)
T KOG1334|consen 211 VRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVD 290 (559)
T ss_pred eeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecC
Confidence 9988776543344345556688999999999976 678899999999999999765433322 01222 34555555
Q ss_pred cCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceee-----------eecCCCC
Q 018858 156 PWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI-----------SRSKSTT 224 (349)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----------~~~~~~~ 224 (349)
|- +...+++|+.|..+++||.+.-... ..+....
T Consensus 291 P~-----------------------------------nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~ 335 (559)
T KOG1334|consen 291 PR-----------------------------------NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDD 335 (559)
T ss_pred CC-----------------------------------CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccC
Confidence 52 5568999999999999998863221 1112234
Q ss_pred CCccceeeeeccccEEEEeeee-eecCc----eee----------eee-eeecCCCc--ceEEEEEeeecCCccEEEEee
Q 018858 225 KPLKGSQSTSKVNIRDAEMEIL-DQSGG----KRL----------HLD-YSVGGHTA--AASCVAFSMFGERGKYLISGG 286 (349)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~----------~~~-~~~~~h~~--~i~~i~~~~~~~~~~~l~s~~ 286 (349)
...|.+++++.++..++++.+. +.... ..+ ... ..+++|.. .|..+.| |+|...|+++|+
T Consensus 336 ~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNF--fGPrsEyVvSGS 413 (559)
T KOG1334|consen 336 PVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNF--FGPRSEYVVSGS 413 (559)
T ss_pred cccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeee--ccCccceEEecC
Confidence 5678899999777666542221 11100 000 122 23778854 5667665 358899999999
Q ss_pred CCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 287 NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 287 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
.=|.|.||+-.++ +++..+.+....|+|+.-+|... .||++|-|.-|+||.
T Consensus 414 DCGhIFiW~K~t~---------eii~~MegDr~VVNCLEpHP~~P-vLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 414 DCGHIFIWDKKTG---------EIIRFMEGDRHVVNCLEPHPHLP-VLASSGIDHDVKIWT 464 (559)
T ss_pred ccceEEEEecchh---------HHHHHhhcccceEeccCCCCCCc-hhhccCCccceeeec
Confidence 9999999999998 67777777666999999988665 899999999999995
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-20 Score=158.40 Aligned_cols=250 Identities=16% Similarity=0.161 Sum_probs=178.1
Q ss_pred CceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcE--EE----EeecCCCCeEEEEEecCCCE--EEEEeCCCeEEEE
Q 018858 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV--QL----VTDVGNGPVTSLCFKSGNED--IIYVSSGKEVKSF 85 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~--~~----~~~~~~~~v~~~~~~~~~~~--l~~~~~dg~i~iw 85 (349)
-...|+|+.|+|.+..+++.|..+|.|.+||+..+.. .. ....|..+++.+.|..+..- +++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 4578999999999899999999999999999987654 22 22348899999999765444 9999999999999
Q ss_pred EccCCCccc---ceeecc------CcccceEEEEEccCC-CEEEEEcCCCcEEEEEcC---Cce-----Eeceecccccc
Q 018858 86 DVHMPASWR---PLESYN------YNKEEINQIVCNPKS-SFLACADDGGDVKIIDIR---QHC-----LYKSLRAGHSS 147 (349)
Q Consensus 86 d~~~~~~~~---~~~~~~------~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~---~~~-----~~~~~~~~~~~ 147 (349)
+++.-.... ...... .....+++++|.+.. ..|++|+++|.|..=+-. ... ....+. .|.+
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~-~h~g 399 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFI-THIG 399 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccccccc-ccCc
Confidence 887532211 111111 112467899998844 789999999998773322 111 122344 6788
Q ss_pred ceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCc
Q 018858 148 ICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPL 227 (349)
Q Consensus 148 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 227 (349)
+|+++.++|- ....|++++ |.+++||.....
T Consensus 400 ~v~~v~~nPF-----------------------------------~~k~fls~g-DW~vriWs~~~~------------- 430 (555)
T KOG1587|consen 400 PVYAVSRNPF-----------------------------------YPKNFLSVG-DWTVRIWSEDVI------------- 430 (555)
T ss_pred ceEeeecCCC-----------------------------------ccceeeeec-cceeEeccccCC-------------
Confidence 8999999882 234444544 999999998731
Q ss_pred cceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccc
Q 018858 228 KGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSIN 307 (349)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~ 307 (349)
..++..+..+...+++++|||. ....++++..||.|.+||+.....
T Consensus 431 --------------------------~~Pl~~~~~~~~~v~~vaWSpt--rpavF~~~d~~G~l~iWDLl~~~~------ 476 (555)
T KOG1587|consen 431 --------------------------ASPLLSLDSSPDYVTDVAWSPT--RPAVFATVDGDGNLDIWDLLQDDE------ 476 (555)
T ss_pred --------------------------CCcchhhhhccceeeeeEEcCc--CceEEEEEcCCCceehhhhhcccc------
Confidence 1455566667777999999963 345888999999999999987543
Q ss_pred cceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 308 NDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 308 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.+.....-+....+.+.|++ .++.|++|...|.+.+|+++
T Consensus 477 -~Pv~s~~~~~~~l~~~~~s~-~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 477 -EPVLSQKVCSPALTRVRWSP-NGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred -CCcccccccccccceeecCC-CCcEEEEecCCCcEEEEEcC
Confidence 22223333344555565644 78899999999999999984
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.8e-21 Score=148.87 Aligned_cols=207 Identities=14% Similarity=0.236 Sum_probs=159.5
Q ss_pred EeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEEccCCCc----ccceeeccCcccceEEEEEccCC-CEEEEEcCCCc
Q 018858 53 VTDVGNGPVTSLCFKS-GNEDIIYVSSGKEVKSFDVHMPAS----WRPLESYNYNKEEINQIVCNPKS-SFLACADDGGD 126 (349)
Q Consensus 53 ~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~ 126 (349)
.+.+|.++|..++|+| +.+.||+||.|.+|.||.+..+.. ..++..+.+|...|--++|+|.. +.|++++.|..
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4568999999999999 455689999999999999876432 34556788899999999999965 78899999999
Q ss_pred EEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeE
Q 018858 127 VKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVV 206 (349)
Q Consensus 127 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 206 (349)
|.+||+.+++.+-++. |...|+++.|+- +|.+|++.+.|..|
T Consensus 156 v~iWnv~tgeali~l~--hpd~i~S~sfn~------------------------------------dGs~l~TtckDKkv 197 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD--HPDMVYSMSFNR------------------------------------DGSLLCTTCKDKKV 197 (472)
T ss_pred EEEEeccCCceeeecC--CCCeEEEEEecc------------------------------------CCceeeeeccccee
Confidence 9999999999888887 999999999998 89999999999999
Q ss_pred EEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCc-ceEEEEEeeecCCccEEEEe
Q 018858 207 DVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTA-AASCVAFSMFGERGKYLISG 285 (349)
Q Consensus 207 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~i~~i~~~~~~~~~~~l~s~ 285 (349)
++||.+++ +.+..-.+|.+ .-..+.|- .++.++-||
T Consensus 198 Rv~dpr~~----------------------------------------~~v~e~~~heG~k~~Raifl---~~g~i~tTG 234 (472)
T KOG0303|consen 198 RVIDPRRG----------------------------------------TVVSEGVAHEGAKPARAIFL---ASGKIFTTG 234 (472)
T ss_pred EEEcCCCC----------------------------------------cEeeecccccCCCcceeEEe---ccCceeeec
Confidence 99999986 34444456654 22344455 688855555
Q ss_pred e---CCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEee-CCCeEEEeeC
Q 018858 286 G---NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD-TSKVVKVYSI 348 (349)
Q Consensus 286 ~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iw~~ 348 (349)
- .+..+-+||..+.+. +........++.|.---+.+ |.+.++.+| .|+.|+.|.+
T Consensus 235 fsr~seRq~aLwdp~nl~e-------P~~~~elDtSnGvl~PFyD~-dt~ivYl~GKGD~~IRYyEi 293 (472)
T KOG0303|consen 235 FSRMSERQIALWDPNNLEE-------PIALQELDTSNGVLLPFYDP-DTSIVYLCGKGDSSIRYFEI 293 (472)
T ss_pred cccccccceeccCcccccC-------cceeEEeccCCceEEeeecC-CCCEEEEEecCCcceEEEEe
Confidence 3 578999999887642 22223333444554444544 667777777 8999999875
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.4e-21 Score=146.67 Aligned_cols=219 Identities=14% Similarity=0.159 Sum_probs=158.7
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEe---ecCCCCeEEEEEecCCCEEEEEeCCC
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVT---DVGNGPVTSLCFKSGNEDIIYVSSGK 80 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg 80 (349)
+++....+.+|...|+.+.+.|++.+++++++.|..|++|++++..++..+ .+|...|.++.|++++.+|++++.|.
T Consensus 124 ~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDh 203 (385)
T KOG1034|consen 124 SGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDH 203 (385)
T ss_pred hhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcc
Confidence 466788899999999999999998899999999999999999999998776 46999999999999999999999999
Q ss_pred eEEEEEccCCCcccc-------------------------eeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcC-C
Q 018858 81 EVKSFDVHMPASWRP-------------------------LESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIR-Q 134 (349)
Q Consensus 81 ~i~iwd~~~~~~~~~-------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~ 134 (349)
+|++|++...+.... +.+...|...|.|+.|- |+++++-+-++.|..|... -
T Consensus 204 slk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl 281 (385)
T KOG1034|consen 204 SLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKL 281 (385)
T ss_pred eEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchh
Confidence 999999974321110 01122345566666664 5688888888899999872 1
Q ss_pred ceEeceecc------------ccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcC
Q 018858 135 HCLYKSLRA------------GHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG 202 (349)
Q Consensus 135 ~~~~~~~~~------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (349)
.+.+...+. -....+.-+.|. +.+ -++.||.|..
T Consensus 282 ~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~----------------------------~d~------~~~~la~gnq 327 (385)
T KOG1034|consen 282 EESIHNVKPPESATTILGEFDYPMCDIWFIRFA----------------------------FDP------WQKMLALGNQ 327 (385)
T ss_pred hhhhhccCCCccceeeeeEeccCccceEEEEEe----------------------------ecH------HHHHHhhccC
Confidence 222112210 111222222221 111 5789999999
Q ss_pred CCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEE
Q 018858 203 DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYL 282 (349)
Q Consensus 203 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l 282 (349)
.|.|.+||++....... ..+.+.. -...|...+|+ .|+.+|
T Consensus 328 ~g~v~vwdL~~~ep~~~----------------------------------ttl~~s~--~~~tVRQ~sfS---~dgs~l 368 (385)
T KOG1034|consen 328 SGKVYVWDLDNNEPPKC----------------------------------TTLTHSK--SGSTVRQTSFS---RDGSIL 368 (385)
T ss_pred CCcEEEEECCCCCCccC----------------------------------ceEEecc--ccceeeeeeec---ccCcEE
Confidence 99999999997421100 0111111 24578999999 899999
Q ss_pred EEeeCCCeEEEEecC
Q 018858 283 ISGGNDKLVKVWDCS 297 (349)
Q Consensus 283 ~s~~~d~~i~vwd~~ 297 (349)
+....|++|.=||.-
T Consensus 369 v~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 369 VLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEeCCCcEEEEEee
Confidence 999999999999864
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.2e-22 Score=168.38 Aligned_cols=281 Identities=16% Similarity=0.167 Sum_probs=187.2
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK 83 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 83 (349)
.++.++.|.+|...|.|..|... |.++++|+.|..++||..++..++....+|.+.++.++.+.++.++++++.|..|+
T Consensus 179 kmk~ikrLlgH~naVyca~fDrt-g~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIr 257 (1113)
T KOG0644|consen 179 KMKNIKRLLGHRNAVYCAIFDRT-GRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIR 257 (1113)
T ss_pred HHHHHHHHHhhhhheeeeeeccc-cceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEE
Confidence 45677889999999999999998 89999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcC-CceE--eceeccccccceeEEEEccCCCC
Q 018858 84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIR-QHCL--YKSLRAGHSSICSSVQFIPWKPW 160 (349)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~--~~~~~~~~~~~v~~~~~~~~~~~ 160 (349)
+|.+.++ .++..+.+|.+.|++++|+|-. +.+.||++++||.+ .... ..-++......+-.+.|..
T Consensus 258 vWrl~~~---~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~---- 326 (1113)
T KOG0644|consen 258 VWRLPDG---APVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFEN---- 326 (1113)
T ss_pred EEecCCC---chHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccc----
Confidence 9999976 5566777899999999999953 77889999999988 1110 0111111223344444444
Q ss_pred CCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEE
Q 018858 161 EGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRD 240 (349)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (349)
++.-+++++.|+.-..|.......... ..--+..+.+-..+
T Consensus 327 --------------------------------~~~~f~Tgs~d~ea~n~e~~~l~~~~~-------~lif~t~ssd~~~~ 367 (1113)
T KOG0644|consen 327 --------------------------------NGDRFLTGSRDGEARNHEFEQLAWRSN-------LLIFVTRSSDLSSI 367 (1113)
T ss_pred --------------------------------cccccccccCCcccccchhhHhhhhcc-------ceEEEecccccccc
Confidence 333444444444444444332100000 00000000000000
Q ss_pred EEeeee----eecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccc
Q 018858 241 AEMEIL----DQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNIN 316 (349)
Q Consensus 241 ~~~~~~----~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 316 (349)
...... .......+.+.+.+.+|...++.+.++|| +.+...+++.||...|||+-.+.. ......+
T Consensus 368 ~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpf--n~ri~msag~dgst~iwdi~eg~p--------ik~y~~g 437 (1113)
T KOG0644|consen 368 VVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPF--NPRIAMSAGYDGSTIIWDIWEGIP--------IKHYFIG 437 (1113)
T ss_pred ceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCC--CcHhhhhccCCCceEeeecccCCc--------ceeeecc
Confidence 000000 00001122556778889999999999974 556778999999999999988742 2223344
Q ss_pred cccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 317 LNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 317 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
|. .+..-+|++ +|..++....-|.++|..
T Consensus 438 h~-kl~d~kFSq-dgts~~lsd~hgql~i~g 466 (1113)
T KOG0644|consen 438 HG-KLVDGKFSQ-DGTSIALSDDHGQLYILG 466 (1113)
T ss_pred cc-eeeccccCC-CCceEecCCCCCceEEec
Confidence 43 444557766 776666666667776653
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-18 Score=149.07 Aligned_cols=247 Identities=22% Similarity=0.377 Sum_probs=194.6
Q ss_pred eeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc-EEEEeecCC-CCeEEEEE-ecCCC-EEEEEeC-CCeEEE
Q 018858 10 RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD-VQLVTDVGN-GPVTSLCF-KSGNE-DIIYVSS-GKEVKS 84 (349)
Q Consensus 10 ~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~-~~~~~~~~~-~~v~~~~~-~~~~~-~l~~~~~-dg~i~i 84 (349)
.+..|...+.++.+.+. +..++.++.|+.+.+|+...+. ....+..+. ..+..+.+ ++++. .++..+. |+.+.+
T Consensus 60 ~~~~~~~~i~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 138 (466)
T COG2319 60 LLRGHEDSITSIAFSPD-GELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL 138 (466)
T ss_pred eeeeccceEEEEEECCC-CcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEE
Confidence 46689999999999998 7889989999999999998886 566666544 36777777 77777 4555444 899999
Q ss_pred EEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcC-CCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCC
Q 018858 85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
|+... .......+..|...+..++|+|++..++.++. ++.+++|++..+..+..+. .|...+.+++|+|
T Consensus 139 ~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~------- 208 (466)
T COG2319 139 WDLST--PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA-GHTDPVSSLAFSP------- 208 (466)
T ss_pred EEecC--CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeec-cCCCceEEEEEcC-------
Confidence 99985 12444555667788999999999998888885 9999999999888888888 7899999999998
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCc-EEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEE
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNK-ICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE 242 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (349)
++. .+++++.|+.|++||...+
T Consensus 209 -----------------------------~~~~~~~~~~~d~~i~~wd~~~~---------------------------- 231 (466)
T COG2319 209 -----------------------------DGGLLIASGSSDGTIRLWDLSTG---------------------------- 231 (466)
T ss_pred -----------------------------CcceEEEEecCCCcEEEEECCCC----------------------------
Confidence 566 5555589999999987743
Q ss_pred eeeeeecCceeeeeee-eecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccce
Q 018858 243 MEILDQSGGKRLHLDY-SVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKV 321 (349)
Q Consensus 243 ~~~~~~~~~~~~~~~~-~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v 321 (349)
.... .+.+|.... ...|+ +++.++++++.|+.+++|++..... .+.....|...+
T Consensus 232 ------------~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~d~~~~~~~~~~~~~--------~~~~~~~~~~~v 287 (466)
T COG2319 232 ------------KLLRSTLSGHSDSV-VSSFS---PDGSLLASGSSDGTIRLWDLRSSSS--------LLRTLSGHSSSV 287 (466)
T ss_pred ------------cEEeeecCCCCcce-eEeEC---CCCCEEEEecCCCcEEEeeecCCCc--------EEEEEecCCccE
Confidence 2223 466666654 33777 7888999999999999999997642 122226788999
Q ss_pred EEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 322 NWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 322 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.++.+.| ++..+++++.|+.+++|++.
T Consensus 288 ~~~~~~~-~~~~~~~~~~d~~~~~~~~~ 314 (466)
T COG2319 288 LSVAFSP-DGKLLASGSSDGTVRLWDLE 314 (466)
T ss_pred EEEEECC-CCCEEEEeeCCCcEEEEEcC
Confidence 9999988 67778888888999999863
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.8e-19 Score=156.42 Aligned_cols=305 Identities=13% Similarity=0.149 Sum_probs=203.6
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC-------cEEEEeecCCCCeEEEEEecCCCEEEEE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK-------DVQLVTDVGNGPVTSLCFKSGNEDIIYV 76 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 76 (349)
.|..+.+|..|...|..++.++..+.+++||+.||+|++||.... +...++..-...+.++...+.++.+|.+
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence 467888999999999999999886799999999999999998642 1223344456788999999999999999
Q ss_pred eCCCeEEEEEccCCCcccc--e----eeccCcccceEEEEEccC-C-CEEEEEcCCCcEEEEEcCCceEeceecc-cccc
Q 018858 77 SSGKEVKSFDVHMPASWRP--L----ESYNYNKEEINQIVCNPK-S-SFLACADDGGDVKIIDIRQHCLYKSLRA-GHSS 147 (349)
Q Consensus 77 ~~dg~i~iwd~~~~~~~~~--~----~~~~~~~~~v~~~~~~~~-~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~ 147 (349)
+.||.|++.++......+. . .........+..-++... + ..++.+...+.|..||++.......++. ...+
T Consensus 1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence 9999999999875211111 0 111111122333344332 2 3778888889999999997766655541 3356
Q ss_pred ceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCc
Q 018858 148 ICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPL 227 (349)
Q Consensus 148 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 227 (349)
.|++++.+| .++.++.|+..|.+.+||++=+..+.....+...+
T Consensus 1197 ~vTSi~idp------------------------------------~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~ 1240 (1431)
T KOG1240|consen 1197 LVTSIVIDP------------------------------------WCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAP 1240 (1431)
T ss_pred ceeEEEecC------------------------------------CceEEEEecCCceEEEEEeecCceeecccCcccCC
Confidence 788888888 68899999999999999999888888888888888
Q ss_pred cceeeeecccc---EEEEeee--------eeecCceeeeee----------eeec------CCCcceEEEEEeeecCCcc
Q 018858 228 KGSQSTSKVNI---RDAEMEI--------LDQSGGKRLHLD----------YSVG------GHTAAASCVAFSMFGERGK 280 (349)
Q Consensus 228 ~~~~~~~~~~~---~~~~~~~--------~~~~~~~~~~~~----------~~~~------~h~~~i~~i~~~~~~~~~~ 280 (349)
+..+..+|-.+ ..++.+. |+.........+ ..+. .+.-......+. ..+.
T Consensus 1241 i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~---~~~~ 1317 (1431)
T KOG1240|consen 1241 IRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVC---EKNG 1317 (1431)
T ss_pred cceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecc---cCCc
Confidence 88887776443 3333222 111000000000 0000 011111122222 3567
Q ss_pred EEEEeeCCCeEEEEecCCCcceec--------------------c-----------------cc-----cc-----eeee
Q 018858 281 YLISGGNDKLVKVWDCSRFQGVQT--------------------S-----------------IN-----ND-----LLIK 313 (349)
Q Consensus 281 ~l~s~~~d~~i~vwd~~~~~~~~~--------------------~-----------------~~-----~~-----~~~~ 313 (349)
++++|+.|..|+.||....+.... . .. .. ....
T Consensus 1318 ~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~p 1397 (1431)
T KOG1240|consen 1318 FLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDP 1397 (1431)
T ss_pred eeeecCCccceeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCC
Confidence 999999999999999876543200 0 00 00 0011
Q ss_pred ccccccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 314 NINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 314 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
...|.++|+++++...+..+|++++.||.|+||.
T Consensus 1398 s~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1398 STYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred cccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 2358889999998775656899999999999994
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.7e-19 Score=133.89 Aligned_cols=230 Identities=15% Similarity=0.128 Sum_probs=174.3
Q ss_pred eeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc---EEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 018858 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD---VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 9 ~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 85 (349)
..+.--.++|+|.+|+++ +..+|.+.....|.||.....+ ..+++..|...|+.+.|+|..+.|++|+.|..-++|
T Consensus 4 ~~~~~~~~pitchAwn~d-rt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw 82 (361)
T KOG1523|consen 4 VVFHRLLEPITCHAWNSD-RTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVW 82 (361)
T ss_pred EEeeeccCceeeeeecCC-CceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccc
Confidence 344445689999999998 8999999999999999877554 578899999999999999999999999999999999
Q ss_pred EccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEe---ceeccccccceeEEEEccCCCCCC
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLY---KSLRAGHSSICSSVQFIPWKPWEG 162 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~ 162 (349)
....+...++.-.+..+...++++.|+|.++.||+|+....|.||-++..+-- +.++..+.+.|.+++|+|
T Consensus 83 ~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp------ 156 (361)
T KOG1523|consen 83 TQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP------ 156 (361)
T ss_pred ccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC------
Confidence 98555555555455556789999999999999999999999999988754332 112214567899999999
Q ss_pred CCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEE
Q 018858 163 LPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE 242 (349)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (349)
++-+|+.|+.|+..++|..--...... . +-.|-|..
T Consensus 157 ------------------------------nnVLlaaGs~D~k~rVfSayIK~Vdek-p----------ap~pWgsk--- 192 (361)
T KOG1523|consen 157 ------------------------------NNVLLAAGSTDGKCRVFSAYIKGVDEK-P----------APTPWGSK--- 192 (361)
T ss_pred ------------------------------CcceecccccCcceeEEEEeeeccccC-C----------CCCCCccC---
Confidence 788999999999999997642100000 0 00000000
Q ss_pred eeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCc
Q 018858 243 MEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ 300 (349)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 300 (349)
..-..++.++....+.+..+.|+ |.|..|+=.+.|..+.+=|.....
T Consensus 193 --------~PFG~lm~E~~~~ggwvh~v~fs---~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 193 --------MPFGQLMSEASSSGGWVHGVLFS---PSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred --------CcHHHHHHhhccCCCceeeeEeC---CCCCEeeEecCCCceEEeecCCCc
Confidence 00112333443456789999999 899999999999999999988764
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.2e-18 Score=139.31 Aligned_cols=257 Identities=11% Similarity=0.077 Sum_probs=163.4
Q ss_pred CCeeeeCCceeeeEEEEecCCCceEEEe-CCCCcEEEEECC-CCcE--EEEeecCCCCeEEEEEecCCCEEEEEeC-CCe
Q 018858 7 KPRRLRGHKATATCCIASRDRPGFVASS-GEDGCICWFDLR-SKDV--QLVTDVGNGPVTSLCFKSGNEDIIYVSS-GKE 81 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~t~-~~dg~i~vwd~~-~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~ 81 (349)
.+++++ +.+....++++|+ +++|+.+ ..++.|.+|++. +++. +.... .......++++|+++++++++. ++.
T Consensus 27 ~~~~~~-~~~~~~~l~~spd-~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~ 103 (330)
T PRK11028 27 LLQVVD-VPGQVQPMVISPD-KRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANC 103 (330)
T ss_pred eeeEEe-cCCCCccEEECCC-CCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCe
Confidence 455554 3455778899998 7877655 457899999986 3433 22222 2345678999999999988875 789
Q ss_pred EEEEEccCCC-cccceeeccCcccceEEEEEccCCCEEEEE-cCCCcEEEEEcCCceEece-----eccccccceeEEEE
Q 018858 82 VKSFDVHMPA-SWRPLESYNYNKEEINQIVCNPKSSFLACA-DDGGDVKIIDIRQHCLYKS-----LRAGHSSICSSVQF 154 (349)
Q Consensus 82 i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~-----~~~~~~~~v~~~~~ 154 (349)
|.+|++++.. ....+..... ......++++|++++++++ ..++.|.+||+.+...+.. ...........+.|
T Consensus 104 v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~ 182 (330)
T PRK11028 104 VSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVF 182 (330)
T ss_pred EEEEEECCCCCCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEE
Confidence 9999997422 2222222222 2346778899999888654 4568999999976332211 11012334567888
Q ss_pred ccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcC-CCeEEEEEccCc--eeeeecCCCCCCcccee
Q 018858 155 IPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG-DGVVDVINIESE--LNISRSKSTTKPLKGSQ 231 (349)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~--~~~~~~~~~~~~~~~~~ 231 (349)
+| ++++++++.. ++.|.+|+++.. +..
T Consensus 183 ~p------------------------------------dg~~lyv~~~~~~~v~v~~~~~~~~~~~-------------- 212 (330)
T PRK11028 183 HP------------------------------------NQQYAYCVNELNSSVDVWQLKDPHGEIE-------------- 212 (330)
T ss_pred CC------------------------------------CCCEEEEEecCCCEEEEEEEeCCCCCEE--------------
Confidence 88 7888877765 899999999742 100
Q ss_pred eeeccccEEEEeeeeeecCceeeeeeeeec---CCCcceEEEEEeeecCCccEEEEee-CCCeEEEEecCCCcceecccc
Q 018858 232 STSKVNIRDAEMEILDQSGGKRLHLDYSVG---GHTAAASCVAFSMFGERGKYLISGG-NDKLVKVWDCSRFQGVQTSIN 307 (349)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~i~~i~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~ 307 (349)
....+..+. .+......+.++ |++++++++. .++.|.+|++.......
T Consensus 213 ---------------------~~~~~~~~p~~~~~~~~~~~i~~~---pdg~~lyv~~~~~~~I~v~~i~~~~~~~---- 264 (330)
T PRK11028 213 ---------------------CVQTLDMMPADFSDTRWAADIHIT---PDGRHLYACDRTASLISVFSVSEDGSVL---- 264 (330)
T ss_pred ---------------------EEEEEecCCCcCCCCccceeEEEC---CCCCEEEEecCCCCeEEEEEEeCCCCeE----
Confidence 000011111 012233468888 8999998885 47899999996542110
Q ss_pred cceeeeccccccceEEEEeecCCCCcEEEeeC-CCeEEEeeC
Q 018858 308 NDLLIKNINLNKKVNWLCTTPTESENLVVCDT-SKVVKVYSI 348 (349)
Q Consensus 308 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~iw~~ 348 (349)
.++..... ......++++| ++++|+++.. ++.|.+|++
T Consensus 265 -~~~~~~~~-~~~p~~~~~~~-dg~~l~va~~~~~~v~v~~~ 303 (330)
T PRK11028 265 -SFEGHQPT-ETQPRGFNIDH-SGKYLIAAGQKSHHISVYEI 303 (330)
T ss_pred -EEeEEEec-cccCCceEECC-CCCEEEEEEccCCcEEEEEE
Confidence 11111111 12445678887 8888888764 899999976
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-19 Score=148.71 Aligned_cols=267 Identities=14% Similarity=0.024 Sum_probs=182.4
Q ss_pred EEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCC--EEEEEcCCCcEEE
Q 018858 52 LVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSS--FLACADDGGDVKI 129 (349)
Q Consensus 52 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~i 129 (349)
..+.+|.+.|.+|...|.|..|++|+.||+|+||.+.++.+++.... .+.|.|++|+|.+. .||++.. ..+.|
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~----d~~I~~vaw~P~~~~~vLAvA~~-~~~~i 468 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF----DSEIRSVAWNPLSDLCVLAVAVG-ECVLI 468 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee----cceeEEEEecCCCCceeEEEEec-CceEE
Confidence 46678999999999999999999999999999999999876655543 46899999999763 4444443 34666
Q ss_pred EEcCCceEece---------eccccccceeEEEEccCCCCCCCCCCCC--CCccccCCceeEEeecCcccccCCCCcEEE
Q 018858 130 IDIRQHCLYKS---------LRAGHSSICSSVQFIPWKPWEGLPENNG--NAGQCYNPAFVHAIAIPDADMLDKTNKICV 198 (349)
Q Consensus 130 ~d~~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 198 (349)
.+..-|..+.. ...........+.|++. ..+.-. .-........+..+.++. .|.||+
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~-----~~~e~~~~v~~~I~~~k~i~~vtWHr------kGDYla 537 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRA-----SLDELEKGVCIVIKHPKSIRQVTWHR------KGDYLA 537 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechh-----hhhhhccceEEEEecCCccceeeeec------CCceEE
Confidence 66543321111 10000001122334331 000000 001112334566666666 899999
Q ss_pred EEcCC---CeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCc--eeeeeeeeecCCCcceEEEEEe
Q 018858 199 VAKGD---GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG--KRLHLDYSVGGHTAAASCVAFS 273 (349)
Q Consensus 199 ~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~h~~~i~~i~~~ 273 (349)
+...+ ..|.|+++...... .........+..+.|+|...++.++......+. ....+++.+......|..++++
T Consensus 538 tV~~~~~~~~VliHQLSK~~sQ-~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msih 616 (733)
T KOG0650|consen 538 TVMPDSGNKSVLIHQLSKRKSQ-SPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIH 616 (733)
T ss_pred EeccCCCcceEEEEeccccccc-CchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeec
Confidence 87654 47889998865433 333345677889999999988876443333222 2334455565566789999999
Q ss_pred eecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 274 MFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 274 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
|.|.-|+.|+.|+.+..||+.-.. ++.+.+..|...++++++++ .-.++++|+.||++.|+-
T Consensus 617 ---p~GDnli~gs~d~k~~WfDldlss--------kPyk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 617 ---PNGDNLILGSYDKKMCWFDLDLSS--------KPYKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFH 678 (733)
T ss_pred ---CCCCeEEEecCCCeeEEEEcccCc--------chhHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEEe
Confidence 899999999999999999998753 56778888999999999998 444899999999999873
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-19 Score=147.33 Aligned_cols=250 Identities=16% Similarity=0.198 Sum_probs=166.0
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEee-cCCCCeEEEEEec--CCCEEEEEeCCCeE
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD-VGNGPVTSLCFKS--GNEDIIYVSSGKEV 82 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~dg~i 82 (349)
.+.+.|.||++.|.|++|+.+ |.+|++|+.|-.+.|||.-..+++..+. +|...|.++.|-| +.+.+++|..|..|
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~d-G~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNAD-GELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred chhhhhccccceecceeecCC-CCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence 456788999999999999998 9999999999999999998888877764 7999999999988 56678999999999
Q ss_pred EEEEccCCC-------cccceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEE
Q 018858 83 KSFDVHMPA-------SWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQF 154 (349)
Q Consensus 83 ~iwd~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 154 (349)
+++|+...+ ...+...+..|...|..++-.|++ +.|.++++||+|+-+|++....... .....+..+.+
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p---~~~~~~~l~ny 196 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNP---DEDCPSILVNY 196 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCc---cccccHHHHHh
Confidence 999998521 223445567788899999999988 8899999999999999986432111 01111112222
Q ss_pred ccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeec----CCCCCCccce
Q 018858 155 IPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS----KSTTKPLKGS 230 (349)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~~~~~~~ 230 (349)
.|+ .....+++++|. +..+|++|+.|...++||.+........ ..+.+...++
T Consensus 197 ~~~------------------lielk~ltisp~-----rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~c 253 (758)
T KOG1310|consen 197 NPQ------------------LIELKCLTISPS-----RPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRC 253 (758)
T ss_pred chh------------------hheeeeeeecCC-----CCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccch
Confidence 221 122334444442 6789999999999999997532111100 0011111112
Q ss_pred e-eeeccccEEEEeeeeeecCceeeeeeeeecC-CCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcc
Q 018858 231 Q-STSKVNIRDAEMEILDQSGGKRLHLDYSVGG-HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG 301 (349)
Q Consensus 231 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 301 (349)
+ .|+|.+. +...+ ....++++.+..+.|+|.-|+..-..-.|+++|+...+.
T Consensus 254 v~yf~p~hl-------------------kn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~ 307 (758)
T KOG1310|consen 254 VRYFSPGHL-------------------KNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKS 307 (758)
T ss_pred hheecCccc-------------------cCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCC
Confidence 2 2333221 11111 112344444333338987666655456799999988753
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-19 Score=137.44 Aligned_cols=253 Identities=17% Similarity=0.188 Sum_probs=173.3
Q ss_pred cCCCCeeeeCCceeeeEEEEecC-CCceEEEeCCCCcEEEEECCCCcEEEE--eecCC-CCeEEEEEecCCCEEEEEeC-
Q 018858 4 AEAKPRRLRGHKATATCCIASRD-RPGFVASSGEDGCICWFDLRSKDVQLV--TDVGN-GPVTSLCFKSGNEDIIYVSS- 78 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~-~~~~l~t~~~dg~i~vwd~~~~~~~~~--~~~~~-~~v~~~~~~~~~~~l~~~~~- 78 (349)
+++.++.+++|...+..+.|... .+..+.+++.||+|++||++....... +..+. .+..+++....++.+++|..
T Consensus 59 tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~ 138 (376)
T KOG1188|consen 59 TGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTEL 138 (376)
T ss_pred chhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEecccc
Confidence 56788999999999999999874 367899999999999999987665433 33344 46677777767777777763
Q ss_pred ---CCeEEEEEccCCCccccee-eccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCce----Eeceeccccccce
Q 018858 79 ---GKEVKSFDVHMPASWRPLE-SYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHC----LYKSLRAGHSSIC 149 (349)
Q Consensus 79 ---dg~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~v 149 (349)
+-.|.+||++..+. .+. ....|.+.|+++.|+|.. +.|++|+.||-|.+||++... .+.++. +...|
T Consensus 139 ~~s~A~v~lwDvR~~qq--~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN--~~sSI 214 (376)
T KOG1188|consen 139 TRSDASVVLWDVRSEQQ--LLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVIN--HGSSI 214 (376)
T ss_pred ccCceEEEEEEeccccc--hhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhc--cccee
Confidence 56899999997543 122 245688999999999965 899999999999999998542 233443 67778
Q ss_pred eEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCC-Ccc
Q 018858 150 SSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK-PLK 228 (349)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~ 228 (349)
.++.|..+ .-+.+.+-+..+...+|+++.+.....+..+.. ...
T Consensus 215 ~~igw~~~-----------------------------------~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d 259 (376)
T KOG1188|consen 215 HLIGWLSK-----------------------------------KYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADD 259 (376)
T ss_pred eeeeeecC-----------------------------------CcceEEEEEccCceeEEEccCCChhhcccCccchhhh
Confidence 99999873 234577888899999999997764443332210 000
Q ss_pred c--------ee-eeeccc-cEEEEeeeeeec----------CceeeeeeeeecC-CCcceEEEEEeeecCCccEEEEeeC
Q 018858 229 G--------SQ-STSKVN-IRDAEMEILDQS----------GGKRLHLDYSVGG-HTAAASCVAFSMFGERGKYLISGGN 287 (349)
Q Consensus 229 ~--------~~-~~~~~~-~~~~~~~~~~~~----------~~~~~~~~~~~~~-h~~~i~~i~~~~~~~~~~~l~s~~~ 287 (349)
. -+ ..+|.. ...+..+...+. ..........+.+ |..-|+++.|. ..+.++.|||+
T Consensus 260 ~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~---~~~~~l~TGGE 336 (376)
T KOG1188|consen 260 LRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFD---VKNDVLYTGGE 336 (376)
T ss_pred HHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhh---cccceeeccCC
Confidence 0 00 222322 222222221110 0111222334454 66778888887 78889999999
Q ss_pred CCeEEEEecCC
Q 018858 288 DKLVKVWDCSR 298 (349)
Q Consensus 288 d~~i~vwd~~~ 298 (349)
||.+.+|..+.
T Consensus 337 DG~l~~Wk~~d 347 (376)
T KOG1188|consen 337 DGLLQAWKVED 347 (376)
T ss_pred CceEEEEecCC
Confidence 99999999644
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-18 Score=151.59 Aligned_cols=248 Identities=14% Similarity=0.126 Sum_probs=175.4
Q ss_pred eeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecC---CCCeEEEEEec--CCCEEEEEeCCCeEEEEEcc-CC
Q 018858 17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVG---NGPVTSLCFKS--GNEDIIYVSSGKEVKSFDVH-MP 90 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~---~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~-~~ 90 (349)
+-..+.|+|- ...++++...-.|++||.+.++.+..+..+ ...|+.+.+-. +..++++|+.||.|+||+-- ..
T Consensus 1066 ~pk~~~~hpf-~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1066 PPKTLKFHPF-EPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCceeeecCC-CceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 3455778887 678888887789999999999987777654 35688888754 55679999999999999633 22
Q ss_pred -CcccceeeccCc-------ccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCC
Q 018858 91 -ASWRPLESYNYN-------KEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEG 162 (349)
Q Consensus 91 -~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 162 (349)
+..+.+..+.+- .+.-.-+.|.....+|+++++-..|+|||.....+...+..+.+..++++.-+..
T Consensus 1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~----- 1219 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLV----- 1219 (1387)
T ss_pred cCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeeccccc-----
Confidence 222222222111 1111346777776677777778899999999887777776455556666655442
Q ss_pred CCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEE
Q 018858 163 LPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE 242 (349)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (349)
.|++++.|..||.|++||.+...
T Consensus 1220 ------------------------------~gn~i~AGfaDGsvRvyD~R~a~--------------------------- 1242 (1387)
T KOG1517|consen 1220 ------------------------------HGNIIAAGFADGSVRVYDRRMAP--------------------------- 1242 (1387)
T ss_pred ------------------------------CCceEEEeecCCceEEeecccCC---------------------------
Confidence 57999999999999999998631
Q ss_pred eeeeeecCceeeeeeeeecCCCcc--eEEEEEeeecCCcc-EEEEeeCCCeEEEEecCCCcceecccccceeeecccc--
Q 018858 243 MEILDQSGGKRLHLDYSVGGHTAA--ASCVAFSMFGERGK-YLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL-- 317 (349)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~h~~~--i~~i~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~-- 317 (349)
.-..+...+.|... |..+.+- +.|- .|++|+.||.|++||++..... ..+ ....|
T Consensus 1243 ----------~ds~v~~~R~h~~~~~Iv~~slq---~~G~~elvSgs~~G~I~~~DlR~~~~e------~~~-~iv~~~~ 1302 (1387)
T KOG1517|consen 1243 ----------PDSLVCVYREHNDVEPIVHLSLQ---RQGLGELVSGSQDGDIQLLDLRMSSKE------TFL-TIVAHWE 1302 (1387)
T ss_pred ----------ccccceeecccCCcccceeEEee---cCCCcceeeeccCCeEEEEecccCccc------ccc-eeeeccc
Confidence 11344556677766 8899988 5444 5999999999999999984211 111 11222
Q ss_pred -ccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 318 -NKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 318 -~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.+..+++..++ +...+++|+. +.|+||++.
T Consensus 1303 yGs~lTal~VH~-hapiiAsGs~-q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1303 YGSALTALTVHE-HAPIIASGSA-QLIKIYSLS 1333 (1387)
T ss_pred cCccceeeeecc-CCCeeeecCc-ceEEEEecC
Confidence 33589999988 5668888887 999999974
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-17 Score=142.89 Aligned_cols=249 Identities=22% Similarity=0.372 Sum_probs=189.3
Q ss_pred CCeeeeCCce-eeeEEEE-ecCCCc-eEEEeCC-CCcEEEEECCC-CcEEEEeecCCCCeEEEEEecCCCEEEEEeC-CC
Q 018858 7 KPRRLRGHKA-TATCCIA-SRDRPG-FVASSGE-DGCICWFDLRS-KDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS-GK 80 (349)
Q Consensus 7 ~~~~l~~h~~-~i~~~~~-~~~~~~-~l~t~~~-dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg 80 (349)
....+.++.. .+..+.+ .++ +. +++..+. |+.+.+|+... ......+..|...|..++|+|++..+++++. ++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 178 (466)
T COG2319 100 LIKSLEGLHDSSVSKLALSSPD-GNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDG 178 (466)
T ss_pred eEEEEeccCCCceeeEEEECCC-cceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCC
Confidence 3455555333 6677776 676 44 5555444 89999999998 7778888999999999999999998888886 99
Q ss_pred eEEEEEccCCCcccceeeccCcccceEEEEEccCCC-EEEEEcCCCcEEEEEcCCceEec-eeccccccceeEEEEccCC
Q 018858 81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSS-FLACADDGGDVKIIDIRQHCLYK-SLRAGHSSICSSVQFIPWK 158 (349)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~ 158 (349)
.+++|++..+ ..+..+..|...+.+++|+|++. .+++++.|+.|++||...+.... .+. .|.... ...|+|
T Consensus 179 ~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~-~~~~~~-- 251 (466)
T COG2319 179 TIKLWDLRTG---KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS-GHSDSV-VSSFSP-- 251 (466)
T ss_pred ceEEEEcCCC---ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecC-CCCcce-eEeECC--
Confidence 9999999863 34445555788999999999987 55555899999999988777776 566 666664 337888
Q ss_pred CCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeecccc
Q 018858 159 PWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNI 238 (349)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (349)
++..+++++.|+.+++|+++...
T Consensus 252 ----------------------------------~~~~~~~~~~d~~~~~~~~~~~~----------------------- 274 (466)
T COG2319 252 ----------------------------------DGSLLASGSSDGTIRLWDLRSSS----------------------- 274 (466)
T ss_pred ----------------------------------CCCEEEEecCCCcEEEeeecCCC-----------------------
Confidence 56788899999999999999631
Q ss_pred EEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeec--cc
Q 018858 239 RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKN--IN 316 (349)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~--~~ 316 (349)
.....+.+|...+.++.+. |++..+++++.|+.+.+||..... ..... ..
T Consensus 275 ----------------~~~~~~~~~~~~v~~~~~~---~~~~~~~~~~~d~~~~~~~~~~~~---------~~~~~~~~~ 326 (466)
T COG2319 275 ----------------SLLRTLSGHSSSVLSVAFS---PDGKLLASGSSDGTVRLWDLETGK---------LLSSLTLKG 326 (466)
T ss_pred ----------------cEEEEEecCCccEEEEEEC---CCCCEEEEeeCCCcEEEEEcCCCc---------eEEEeeecc
Confidence 0112225678899999999 778888889889999999888863 22233 36
Q ss_pred cccceEEEEeecCCCCcEEEe-eCCCeEEEeeCC
Q 018858 317 LNKKVNWLCTTPTESENLVVC-DTSKVVKVYSIS 349 (349)
Q Consensus 317 ~~~~v~~~~~~~~~~~~l~~~-~~dg~i~iw~~~ 349 (349)
|...+..+.+ +.++..++.+ ..|+.+.+|++.
T Consensus 327 ~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~ 359 (466)
T COG2319 327 HEGPVSSLSF-SPDGSLLVSGGSDDGTIRLWDLR 359 (466)
T ss_pred cCCceEEEEE-CCCCCEEEEeecCCCcEEeeecC
Confidence 7778899998 5443456666 688999999863
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-19 Score=141.13 Aligned_cols=199 Identities=18% Similarity=0.194 Sum_probs=150.5
Q ss_pred eEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceee
Q 018858 19 TCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLES 98 (349)
Q Consensus 19 ~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 98 (349)
.+++|+++ +..|++++.||++|+|+..+...+.....|.+.|.++.|+|||+.|++.+.| ..+||+.+++..+.....
T Consensus 148 k~vaf~~~-gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGD-GSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCC-CCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 67899998 8999999999999999998888877888899999999999999999999999 899999998743333222
Q ss_pred ccCcccceEEEEEccCC-----CEEEEEcCCCcEEEEEcCCceE---e--ceeccccccceeEEEEccCCCCCCCCCCCC
Q 018858 99 YNYNKEEINQIVCNPKS-----SFLACADDGGDVKIIDIRQHCL---Y--KSLRAGHSSICSSVQFIPWKPWEGLPENNG 168 (349)
Q Consensus 99 ~~~~~~~v~~~~~~~~~-----~~l~~~~~dg~i~i~d~~~~~~---~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 168 (349)
.. -+.....+.|+.++ ..++....-+.|+.||+...+- + ++.. .....|++++.++
T Consensus 226 ~~-k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~-~~~~siSsl~VS~------------ 291 (398)
T KOG0771|consen 226 FS-KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI-KRFKSISSLAVSD------------ 291 (398)
T ss_pred cc-cchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh-hccCcceeEEEcC------------
Confidence 11 12345556676655 2333344456677777652221 1 1111 2334688888887
Q ss_pred CCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeee
Q 018858 169 NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ 248 (349)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (349)
+|++++.|+.||.|.+++..+-+
T Consensus 292 ------------------------dGkf~AlGT~dGsVai~~~~~lq--------------------------------- 314 (398)
T KOG0771|consen 292 ------------------------DGKFLALGTMDGSVAIYDAKSLQ--------------------------------- 314 (398)
T ss_pred ------------------------CCcEEEEeccCCcEEEEEeceee---------------------------------
Confidence 89999999999999999998632
Q ss_pred cCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCC
Q 018858 249 SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 249 ~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 299 (349)
.....-+.|...|+.+.|+ |+.+++++.+.|....|..+.-.
T Consensus 315 ------~~~~vk~aH~~~VT~ltF~---Pdsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 315 ------RLQYVKEAHLGFVTGLTFS---PDSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred ------eeEeehhhheeeeeeEEEc---CCcCcccccccCCceeEEEEeec
Confidence 2233445788999999999 89999999999999999887653
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2e-19 Score=149.65 Aligned_cols=236 Identities=14% Similarity=0.143 Sum_probs=170.0
Q ss_pred ccCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeE
Q 018858 3 DAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEV 82 (349)
Q Consensus 3 ~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 82 (349)
+.+.++++|++|++.|.|++|+.+ |+.+++|+.|..+.+|+.+-... ..+ .|...|.|+.|+|-...+++++-. ..
T Consensus 41 ndG~llqtLKgHKDtVycVAys~d-GkrFASG~aDK~VI~W~~klEG~-LkY-SH~D~IQCMsFNP~~h~LasCsLs-dF 116 (1081)
T KOG1538|consen 41 SDGTLLQPLKGHKDTVYCVAYAKD-GKRFASGSADKSVIIWTSKLEGI-LKY-SHNDAIQCMSFNPITHQLASCSLS-DF 116 (1081)
T ss_pred CCcccccccccccceEEEEEEccC-CceeccCCCceeEEEecccccce-eee-ccCCeeeEeecCchHHHhhhcchh-hc
Confidence 467889999999999999999998 99999999999999998543222 222 389999999999999999998853 36
Q ss_pred EEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEecee--ccccccceeEEEEccCCCC
Q 018858 83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSL--RAGHSSICSSVQFIPWKPW 160 (349)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~ 160 (349)
-+|..+.. .+.... ....+.+.+|..||.+|+.|-.+|+|.+-+-. ++..-.+ +.+.+.+|.+++|+|...-
T Consensus 117 glWS~~qK----~V~K~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~ 190 (1081)
T KOG1538|consen 117 GLWSPEQK----SVSKHK-SSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGE 190 (1081)
T ss_pred cccChhhh----hHHhhh-hheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCC
Confidence 67876632 111111 13568889999999999999999999998743 3322222 2257789999999996321
Q ss_pred C-----CCCC--CC----CCCccccCC-----ceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCC
Q 018858 161 E-----GLPE--NN----GNAGQCYNP-----AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTT 224 (349)
Q Consensus 161 ~-----~~~~--~~----~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 224 (349)
- +..| ++ ...++.+.. -..+++.+-+ +|.+++.|+.|+.+.+|--+.
T Consensus 191 G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~------NGEy~LiGGsdk~L~~fTR~G----------- 253 (1081)
T KOG1538|consen 191 GRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFT------NGEYILLGGSDKQLSLFTRDG----------- 253 (1081)
T ss_pred CccceEEEEeccceeEEEEecceeecccccCCCCchhheecc------CCcEEEEccCCCceEEEeecC-----------
Confidence 1 0001 11 122222211 1234444444 899999999999999987653
Q ss_pred CCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCC
Q 018858 225 KPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR 298 (349)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 298 (349)
-.+.++......|+.++.. |++++++.|+.||+|..|++-.
T Consensus 254 ------------------------------vrLGTvg~~D~WIWtV~~~---PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 254 ------------------------------VRLGTVGEQDSWIWTVQAK---PNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred ------------------------------eEEeeccccceeEEEEEEc---cCCceEEEEEccCeeehhhhHH
Confidence 2333444456789999999 8999999999999999998753
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-17 Score=129.23 Aligned_cols=235 Identities=15% Similarity=0.193 Sum_probs=167.2
Q ss_pred ceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCC--CeEEEEEccCCCc
Q 018858 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG--KEVKSFDVHMPAS 92 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~ 92 (349)
...+..+.|..+ ...|..|+.|| .++|+.+.-............|.-+-|+ ..++|..+.+ +.+++.+++....
T Consensus 5 ~~ti~~~~~Nqd-~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 5 KPTINFIGFNQD-STLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred Ccceeeeeeccc-eeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCce
Confidence 456777778887 77888888887 5888876544322222233345555565 4466666654 4689999886433
Q ss_pred ccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccc--cccceeEEEEccCCCCCCCCCCCCCC
Q 018858 93 WRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAG--HSSICSSVQFIPWKPWEGLPENNGNA 170 (349)
Q Consensus 93 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~ 170 (349)
+..+. + ...|.++.++.+ .|+++-++ .|+|||+++.+++.++... +...+.++++++
T Consensus 81 ICe~~-f---pt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~-------------- 139 (391)
T KOG2110|consen 81 ICEIF-F---PTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNN-------------- 139 (391)
T ss_pred EEEEe-c---CCceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCC--------------
Confidence 22221 2 367888888653 55555554 4999999999999888722 223344444444
Q ss_pred ccccCCceeEEeecCcccccCCCCcEEEEEc--CCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeee
Q 018858 171 GQCYNPAFVHAIAIPDADMLDKTNKICVVAK--GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ 248 (349)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (349)
.+.+++.-+ ..|.|.+||..+-
T Consensus 140 ----------------------~n~ylAyp~s~t~GdV~l~d~~nl---------------------------------- 163 (391)
T KOG2110|consen 140 ----------------------ANCYLAYPGSTTSGDVVLFDTINL---------------------------------- 163 (391)
T ss_pred ----------------------CCceEEecCCCCCceEEEEEcccc----------------------------------
Confidence 556777543 4689999999873
Q ss_pred cCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCe-EEEEecCCCcceecccccceeeeccc--cccceEEEE
Q 018858 249 SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKL-VKVWDCSRFQGVQTSINNDLLIKNIN--LNKKVNWLC 325 (349)
Q Consensus 249 ~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~-i~vwd~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~ 325 (349)
+....+..|++.+-+++|+ ++|.+|||+|+.|+ |||+.+.+++ .+..+.. ....|.+++
T Consensus 164 ------~~v~~I~aH~~~lAalafs---~~G~llATASeKGTVIRVf~v~~G~---------kl~eFRRG~~~~~IySL~ 225 (391)
T KOG2110|consen 164 ------QPVNTINAHKGPLAALAFS---PDGTLLATASEKGTVIRVFSVPEGQ---------KLYEFRRGTYPVSIYSLS 225 (391)
T ss_pred ------eeeeEEEecCCceeEEEEC---CCCCEEEEeccCceEEEEEEcCCcc---------EeeeeeCCceeeEEEEEE
Confidence 5667788999999999999 99999999999887 6999999984 4444432 245789999
Q ss_pred eecCCCCcEEEeeCCCeEEEeeCC
Q 018858 326 TTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 326 ~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
|+| ++++|++.|..++|+||.++
T Consensus 226 Fs~-ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 226 FSP-DSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred ECC-CCCeEEEecCCCeEEEEEec
Confidence 988 88899999999999999874
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.1e-19 Score=139.86 Aligned_cols=204 Identities=16% Similarity=0.180 Sum_probs=149.4
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEecee
Q 018858 62 TSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSL 141 (349)
Q Consensus 62 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 141 (349)
..++|+.+|..+++++.||.++||++... ..+.....|...|.++.|+||+++|++-+.| ..+||+++++..+...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~---~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM---LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc---hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 67899999999999999999999997753 3344455677899999999999999999999 8999999999766655
Q ss_pred c-cccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCC-cEEEEEcCCCeEEEEEccCceeeee
Q 018858 142 R-AGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTN-KICVVAKGDGVVDVINIESELNISR 219 (349)
Q Consensus 142 ~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~ 219 (349)
. ...+.....+.|..+.. .+. ..++....-+.|+.||+..-.
T Consensus 224 t~~~k~~~~~~cRF~~d~~--------------------------------~~~l~laa~~~~~~~v~~~~~~~w~---- 267 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNA--------------------------------QETLRLAASQFPGGGVRLCDISLWS---- 267 (398)
T ss_pred CCcccchhhhhceecccCC--------------------------------CceEEEEEecCCCCceeEEEeeeec----
Confidence 4 12344556677776310 001 223334455677887776310
Q ss_pred cCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCC
Q 018858 220 SKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 299 (349)
.+ + .....+.... ...|++++.+ ++|++++.|+.||.|-|++..+.
T Consensus 268 ---------------~~-~--------------~l~~~~~~~~-~~siSsl~VS---~dGkf~AlGT~dGsVai~~~~~l 313 (398)
T KOG0771|consen 268 ---------------GS-N--------------FLRLRKKIKR-FKSISSLAVS---DDGKFLALGTMDGSVAIYDAKSL 313 (398)
T ss_pred ---------------cc-c--------------ccchhhhhhc-cCcceeEEEc---CCCcEEEEeccCCcEEEEEecee
Confidence 00 0 0011122222 3468999999 99999999999999999999987
Q ss_pred cceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 300 QGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
+ ........|...|+.+.|+| +.+++++.+.|..+.|..+
T Consensus 314 q--------~~~~vk~aH~~~VT~ltF~P-dsr~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 314 Q--------RLQYVKEAHLGFVTGLTFSP-DSRYLASVSSDNEAAVTKL 353 (398)
T ss_pred e--------eeEeehhhheeeeeeEEEcC-CcCcccccccCCceeEEEE
Confidence 4 33345567999999999999 8889999999988887654
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-16 Score=124.28 Aligned_cols=198 Identities=13% Similarity=0.209 Sum_probs=154.6
Q ss_pred eeeeEEEEecCCCceEEEeCCC--CcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcc
Q 018858 16 ATATCCIASRDRPGFVASSGED--GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASW 93 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~d--g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (349)
..|..+.|+.. ++|..+.+ ..+++.+.+.+..++.+. ...+|.++.++ .++|+++-.+. |+|||+++.+..
T Consensus 47 ~~IvEmLFSSS---LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklL 119 (391)
T KOG2110|consen 47 VSIVEMLFSSS---LVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLL 119 (391)
T ss_pred eEEEEeecccc---eeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEc--cceEEEEEccc-EEEEecccceee
Confidence 34666677643 55544443 458999988888887776 45678888886 45677777555 999999998777
Q ss_pred cceeeccCcccceEEEEEccCCCEEEEE--cCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCc
Q 018858 94 RPLESYNYNKEEINQIVCNPKSSFLACA--DDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAG 171 (349)
Q Consensus 94 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 171 (349)
..+...+.+...+.++++++.+.++|.- ...|.|.+||+.+-+....+. .|.+.+.+++|++
T Consensus 120 hTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~-aH~~~lAalafs~--------------- 183 (391)
T KOG2110|consen 120 HTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTIN-AHKGPLAALAFSP--------------- 183 (391)
T ss_pred hhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEE-ecCCceeEEEECC---------------
Confidence 7777776666778888888888888743 346889999999999999999 9999999999999
Q ss_pred cccCCceeEEeecCcccccCCCCcEEEEEcCCCe-EEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecC
Q 018858 172 QCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGV-VDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG 250 (349)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (349)
+|.+||+++..|+ ||+|.+.+++..
T Consensus 184 ---------------------~G~llATASeKGTVIRVf~v~~G~kl--------------------------------- 209 (391)
T KOG2110|consen 184 ---------------------DGTLLATASEKGTVIRVFSVPEGQKL--------------------------------- 209 (391)
T ss_pred ---------------------CCCEEEEeccCceEEEEEEcCCccEe---------------------------------
Confidence 8999999999886 689999876432
Q ss_pred ceeeeeeeeecC--CCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCc
Q 018858 251 GKRLHLDYSVGG--HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ 300 (349)
Q Consensus 251 ~~~~~~~~~~~~--h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 300 (349)
++++- -...|.+++|+ |++++|++.|..++|.||.++...
T Consensus 210 -------~eFRRG~~~~~IySL~Fs---~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 210 -------YEFRRGTYPVSIYSLSFS---PDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred -------eeeeCCceeeEEEEEEEC---CCCCeEEEecCCCeEEEEEecccc
Confidence 23321 13468999999 899999999999999999987644
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.2e-19 Score=145.93 Aligned_cols=234 Identities=17% Similarity=0.240 Sum_probs=161.6
Q ss_pred CceEE--EeCCCCcEEEEECCCC-cE----EEEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEEccCCCcc----cc
Q 018858 28 PGFVA--SSGEDGCICWFDLRSK-DV----QLVTDVGNGPVTSLCFKS-GNEDIIYVSSGKEVKSFDVHMPASW----RP 95 (349)
Q Consensus 28 ~~~l~--t~~~dg~i~vwd~~~~-~~----~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~----~~ 95 (349)
...++ -++..|.|-||++... ++ +-.+. ....|+.+.|.| |.+.|++++.||.|++|.+..+... .+
T Consensus 591 ~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~-Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tP 669 (1012)
T KOG1445|consen 591 NKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLF-NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTP 669 (1012)
T ss_pred cceEEEEecCCCceEEEEEcCCCCCCCcccccccc-cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCc
Confidence 34444 2455689999998753 22 11222 456799999999 7788999999999999999864322 23
Q ss_pred eeeccCcccceEEEEEccC-CCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCcccc
Q 018858 96 LESYNYNKEEINQIVCNPK-SSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCY 174 (349)
Q Consensus 96 ~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (349)
-..+..|...|+++.|+|- .+.|++++.|-+|++||+++++....+. +|.+.|..++|+|
T Consensus 670 e~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~-gHtdqIf~~AWSp------------------ 730 (1012)
T KOG1445|consen 670 EKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLV-GHTDQIFGIAWSP------------------ 730 (1012)
T ss_pred ceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheec-cCcCceeEEEECC------------------
Confidence 3456678899999999994 4789999999999999999999988999 9999999999999
Q ss_pred CCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceee
Q 018858 175 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRL 254 (349)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (349)
+|+.+++.+.||+|++|..++.+.
T Consensus 731 ------------------dGr~~AtVcKDg~~rVy~Prs~e~-------------------------------------- 754 (1012)
T KOG1445|consen 731 ------------------DGRRIATVCKDGTLRVYEPRSREQ-------------------------------------- 754 (1012)
T ss_pred ------------------CCcceeeeecCceEEEeCCCCCCC--------------------------------------
Confidence 899999999999999999997532
Q ss_pred eeeeeecCC-CcceEEEEEeeecCCccEEEEeeCC----CeEEEEecCCCcceecccccceeeec-cccccceEEEEeec
Q 018858 255 HLDYSVGGH-TAAASCVAFSMFGERGKYLISGGND----KLVKVWDCSRFQGVQTSINNDLLIKN-INLNKKVNWLCTTP 328 (349)
Q Consensus 255 ~~~~~~~~h-~~~i~~i~~~~~~~~~~~l~s~~~d----~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~ 328 (349)
.++.-.+. ...--.|.|. -+|+++++.+.| ..|.+||.++... ..+... ..-...+.--.+.+
T Consensus 755 -pv~Eg~gpvgtRgARi~wa---cdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~-------~pl~t~~lDvaps~LvP~YD~ 823 (1012)
T KOG1445|consen 755 -PVYEGKGPVGTRGARILWA---CDGRIVIVVGFDKSSERQVQMYDAQTLDL-------RPLYTQVLDVAPSPLVPHYDY 823 (1012)
T ss_pred -ccccCCCCccCcceeEEEE---ecCcEEEEecccccchhhhhhhhhhhccC-------CcceeeeecccCccccccccC
Confidence 22222211 1122356676 688888877755 5688888766421 111111 11000110011223
Q ss_pred CCCCcEEEeeCCCeEEEeeC
Q 018858 329 TESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 329 ~~~~~l~~~~~dg~i~iw~~ 348 (349)
+.+-++++|-.|..|++|.+
T Consensus 824 Ds~~lfltGKGD~~v~~yEv 843 (1012)
T KOG1445|consen 824 DSNVLFLTGKGDRFVNMYEV 843 (1012)
T ss_pred CCceEEEecCCCceEEEEEe
Confidence 23335666668888888764
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.5e-18 Score=143.42 Aligned_cols=233 Identities=15% Similarity=0.119 Sum_probs=162.9
Q ss_pred CcEEEEECCCCcEEEEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEEccCCCc--cccee-eccCcccceEEEEEcc
Q 018858 38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKS-GNEDIIYVSSGKEVKSFDVHMPAS--WRPLE-SYNYNKEEINQIVCNP 113 (349)
Q Consensus 38 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~-~~~~~~~~v~~~~~~~ 113 (349)
+.+.+|+++........-.-...|.++.|+| +..+++.|..+|+|.+||++.+.. ...+. ....|..+++.+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 4799999987633333333568899999999 556677788999999999997654 22222 2345778999999976
Q ss_pred CCC--EEEEEcCCCcEEEEEcCCceEe-cee----c------cccccceeEEEEccCCCCCCCCCCCCCCccccCCceeE
Q 018858 114 KSS--FLACADDGGDVKIIDIRQHCLY-KSL----R------AGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVH 180 (349)
Q Consensus 114 ~~~--~l~~~~~dg~i~i~d~~~~~~~-~~~----~------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (349)
+.. -|++++.||.|..|+++.-... ... . ......+++++|.+.
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~----------------------- 358 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPT----------------------- 358 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccC-----------------------
Confidence 544 4899999999999988743221 110 0 011224556666653
Q ss_pred EeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeee
Q 018858 181 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSV 260 (349)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (349)
+...|++|+.+|.|.--+-...+... ....+....+
T Consensus 359 ------------~p~~FiVGTe~G~v~~~~r~g~~~~~--------------------------------~~~~~~~~~~ 394 (555)
T KOG1587|consen 359 ------------DPNHFIVGTEEGKVYKGCRKGYTPAP--------------------------------EVSYKGHSTF 394 (555)
T ss_pred ------------CCceEEEEcCCcEEEEEeccCCcccc--------------------------------cccccccccc
Confidence 67889999999998663333211000 0001233456
Q ss_pred cCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecC-CCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeC
Q 018858 261 GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS-RFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDT 339 (349)
Q Consensus 261 ~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 339 (349)
..|.++|+++.++||++ +++++++ |.+++||... .. .++..+..+...+++++|+|.....++++..
T Consensus 395 ~~h~g~v~~v~~nPF~~--k~fls~g-DW~vriWs~~~~~---------~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~ 462 (555)
T KOG1587|consen 395 ITHIGPVYAVSRNPFYP--KNFLSVG-DWTVRIWSEDVIA---------SPLLSLDSSPDYVTDVAWSPTRPAVFATVDG 462 (555)
T ss_pred cccCcceEeeecCCCcc--ceeeeec-cceeEeccccCCC---------CcchhhhhccceeeeeEEcCcCceEEEEEcC
Confidence 67889999999997654 3555555 9999999988 43 5666777778889999999988888999999
Q ss_pred CCeEEEeeCC
Q 018858 340 SKVVKVYSIS 349 (349)
Q Consensus 340 dg~i~iw~~~ 349 (349)
||.+.+|||.
T Consensus 463 ~G~l~iWDLl 472 (555)
T KOG1587|consen 463 DGNLDIWDLL 472 (555)
T ss_pred CCceehhhhh
Confidence 9999999973
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.2e-17 Score=139.77 Aligned_cols=300 Identities=12% Similarity=0.064 Sum_probs=205.7
Q ss_pred ccCCCCeeeeCCceeeeEEEEecCCC--ceEEEeCCCCcEEEEECCCCcEEEEee-------------------------
Q 018858 3 DAEAKPRRLRGHKATATCCIASRDRP--GFVASSGEDGCICWFDLRSKDVQLVTD------------------------- 55 (349)
Q Consensus 3 ~~~~~~~~l~~h~~~i~~~~~~~~~~--~~l~t~~~dg~i~vwd~~~~~~~~~~~------------------------- 55 (349)
.++++++.|.+|..+++.+.+.|... .++++++.||.|++||...+.++.++.
T Consensus 45 ~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~ 124 (792)
T KOG1963|consen 45 ATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSV 124 (792)
T ss_pred chHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeec
Confidence 57888999999999999999988744 467899999999999987654432110
Q ss_pred ------------------------------------------------------------------------------cC
Q 018858 56 ------------------------------------------------------------------------------VG 57 (349)
Q Consensus 56 ------------------------------------------------------------------------------~~ 57 (349)
.|
T Consensus 125 ~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~H 204 (792)
T KOG1963|consen 125 EDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHH 204 (792)
T ss_pred ccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhh
Confidence 12
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCeEEEEEccC-CCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCce
Q 018858 58 NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM-PASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC 136 (349)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 136 (349)
...+++.+++|+++++|++..||.|.+|.--. .........+.-|...|.+++|+++|.+|++|+..|.+.+|.+.+++
T Consensus 205 tf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~ 284 (792)
T KOG1963|consen 205 TFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK 284 (792)
T ss_pred cccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC
Confidence 33457889999999999999999999995332 22233445566678899999999999999999999999999999888
Q ss_pred EeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCcee
Q 018858 137 LYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN 216 (349)
Q Consensus 137 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 216 (349)
.+-++ .-.++|..+.++| ++.+.++...|..|.+....+...
T Consensus 285 -kqfLP-RLgs~I~~i~vS~------------------------------------ds~~~sl~~~DNqI~li~~~dl~~ 326 (792)
T KOG1963|consen 285 -KQFLP-RLGSPILHIVVSP------------------------------------DSDLYSLVLEDNQIHLIKASDLEI 326 (792)
T ss_pred -ccccc-ccCCeeEEEEEcC------------------------------------CCCeEEEEecCceEEEEeccchhh
Confidence 34444 6778999999999 788888888999999988755433
Q ss_pred eeecC---CC-------CCCccceeeeeccccEEEEee---ee---eecCceeeeeeee----ec----CCCcceEEEEE
Q 018858 217 ISRSK---ST-------TKPLKGSQSTSKVNIRDAEME---IL---DQSGGKRLHLDYS----VG----GHTAAASCVAF 272 (349)
Q Consensus 217 ~~~~~---~~-------~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~----~~----~h~~~i~~i~~ 272 (349)
..... .+ .......++++|.-+.++..+ .. +.........+.. .. .+.-.++.++.
T Consensus 327 k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~ 406 (792)
T KOG1963|consen 327 KSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVAR 406 (792)
T ss_pred hhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehh
Confidence 22221 11 223345667777544444321 11 1111111111100 00 12235677777
Q ss_pred eeecCCccEEEEee--------C--CCeEEEEecCCCcceeccccccee-eeccccccceEEEEeecCCC-CcEEEeeCC
Q 018858 273 SMFGERGKYLISGG--------N--DKLVKVWDCSRFQGVQTSINNDLL-IKNINLNKKVNWLCTTPTES-ENLVVCDTS 340 (349)
Q Consensus 273 ~~~~~~~~~l~s~~--------~--d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d 340 (349)
+ ..|.+++|.- . .-.+++|-........ .+. .....|...+...++.++.. ...++++.|
T Consensus 407 ~---~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~-----~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~d 478 (792)
T KOG1963|consen 407 S---RFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTF-----ILNTKINNPHGNAFVATIFLNPTRSVRCVTASVD 478 (792)
T ss_pred h---ccceEEEEeeeeehhhhccCceEEEEEEEEcCCccee-----EEEEEEecCCCceeEEEEEecCcccceeEEeccC
Confidence 7 6799999864 2 2357889877654322 111 23346877777766665433 379999999
Q ss_pred CeEEEeeC
Q 018858 341 KVVKVYSI 348 (349)
Q Consensus 341 g~i~iw~~ 348 (349)
|.++||-+
T Consensus 479 g~~KiW~~ 486 (792)
T KOG1963|consen 479 GDFKIWVF 486 (792)
T ss_pred CeEEEEEE
Confidence 99999975
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.7e-18 Score=123.80 Aligned_cols=204 Identities=14% Similarity=0.132 Sum_probs=143.2
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEEccCC-------CcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEc
Q 018858 60 PVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP-------ASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDI 132 (349)
Q Consensus 60 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 132 (349)
.|.+-+|+|.++++++|+.+|.|.++.+++. +....+...++|++++..++|+ ..+|++|+. |.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeee
Confidence 3556678999999999999999999988641 1223444568899999999998 346666654 99999976
Q ss_pred CCceE------eceec-c-----ccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEE
Q 018858 133 RQHCL------YKSLR-A-----GHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA 200 (349)
Q Consensus 133 ~~~~~------~~~~~-~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 200 (349)
+.... +.+.+ + ..-..|.++-..| ..+.++.+
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP------------------------------------~enSi~~A 132 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDP------------------------------------SENSILFA 132 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEecc------------------------------------CCCcEEEe
Confidence 53211 11111 0 1112355555555 55666667
Q ss_pred cCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCcc
Q 018858 201 KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK 280 (349)
Q Consensus 201 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~ 280 (349)
+.|+.++-||++++ +....+++|...|.++.-- ....
T Consensus 133 gGD~~~y~~dlE~G----------------------------------------~i~r~~rGHtDYvH~vv~R---~~~~ 169 (325)
T KOG0649|consen 133 GGDGVIYQVDLEDG----------------------------------------RIQREYRGHTDYVHSVVGR---NANG 169 (325)
T ss_pred cCCeEEEEEEecCC----------------------------------------EEEEEEcCCcceeeeeeec---ccCc
Confidence 79999999999986 6678899999999999874 4556
Q ss_pred EEEEeeCCCeEEEEecCCCcceecccccceeeecccccc-ceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 281 YLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK-KVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 281 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.+++|++||++|+||.++++..+....-+.......|.+ .|-+++.+. .+|+.| ..-.+.+|.++
T Consensus 170 qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e---dWlvCG-gGp~lslwhLr 235 (325)
T KOG0649|consen 170 QILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE---DWLVCG-GGPKLSLWHLR 235 (325)
T ss_pred ceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC---ceEEec-CCCceeEEecc
Confidence 789999999999999999987655443333334444444 367777743 366655 45578889875
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.1e-18 Score=140.04 Aligned_cols=208 Identities=12% Similarity=0.095 Sum_probs=147.4
Q ss_pred CceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceE
Q 018858 28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEIN 107 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~ 107 (349)
...|+.++.||.+.+-+ +.++....+..|.+.+.+-.|+|+|.-|+++++||.|++|.-. |-.. ..+.....+|.
T Consensus 75 ~d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GMLR---Stl~Q~~~~v~ 149 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GMLR---STVVQNEESIR 149 (737)
T ss_pred cceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chHH---HHHhhcCceeE
Confidence 35688888899999887 4566677888999999999999999999999999999999854 3222 22222457899
Q ss_pred EEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcc
Q 018858 108 QIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDA 187 (349)
Q Consensus 108 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (349)
|++|.|+.+.++.+. .+.+.|=.+.....+-..+ .|++-|.++.|++
T Consensus 150 c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~Wk-AHDGiiL~~~W~~------------------------------- 196 (737)
T KOG1524|consen 150 CARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWR-AHDGLVLSLSWST------------------------------- 196 (737)
T ss_pred EEEECCCCCceEEec-CCeEEEeecccccceeEEe-ccCcEEEEeecCc-------------------------------
Confidence 999999987666543 3578887777666667778 8999999999999
Q ss_pred cccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcce
Q 018858 188 DMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAA 267 (349)
Q Consensus 188 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 267 (349)
..+++++|++|-..++||.... .......++.+|.+++|+|+..+++ ++.+ ..+--....+.|
T Consensus 197 -----~s~lI~sgGED~kfKvWD~~G~--~Lf~S~~~ey~ITSva~npd~~~~v--~S~n--------t~R~~~p~~GSi 259 (737)
T KOG1524|consen 197 -----QSNIIASGGEDFRFKIWDAQGA--NLFTSAAEEYAITSVAFNPEKDYLL--WSYN--------TARFSSPRVGSI 259 (737)
T ss_pred -----cccceeecCCceeEEeecccCc--ccccCChhccceeeeeeccccceee--eeee--------eeeecCCCccce
Confidence 7899999999999999998752 1122233445666667777633333 1110 001111234566
Q ss_pred EEEEEeeecCCccEEEEeeCCCeEEE
Q 018858 268 SCVAFSMFGERGKYLISGGNDKLVKV 293 (349)
Q Consensus 268 ~~i~~~~~~~~~~~l~s~~~d~~i~v 293 (349)
..++|+ +||..+++|...|.+.+
T Consensus 260 fnlsWS---~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 260 FNLSWS---ADGTQATCGTSTGQLIV 282 (737)
T ss_pred EEEEEc---CCCceeeccccCceEEE
Confidence 666666 66666666666665544
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.5e-19 Score=142.59 Aligned_cols=213 Identities=16% Similarity=0.176 Sum_probs=154.5
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC----------cEEEEeecCCCCeEEEEEecCCCEEE
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK----------DVQLVTDVGNGPVTSLCFKSGNEDII 74 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~l~ 74 (349)
-+++.+|++|.++|.|+++.++ +..+++|+.||+|+.|++... .....+.+|...|..+++++....|+
T Consensus 334 ~epi~tfraH~gPVl~v~v~~n-~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Ll 412 (577)
T KOG0642|consen 334 VEPILTFRAHEGPVLCVVVPSN-GEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLL 412 (577)
T ss_pred eeeeEEEecccCceEEEEecCC-ceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccccee
Confidence 4678899999999999999998 899999999999999966421 22456789999999999999999999
Q ss_pred EEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCceEeceecc------cccc
Q 018858 75 YVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYKSLRA------GHSS 147 (349)
Q Consensus 75 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~~~ 147 (349)
+++.||+++.|+...... ..+..... .+....+.+-... ...++....+.-.+++++....+..+.. ....
T Consensus 413 scs~DgTvr~w~~~~~~~-~~f~~~~e-~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~ 490 (577)
T KOG0642|consen 413 SCSSDGTVRLWEPTEESP-CTFGEPKE-HGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYP 490 (577)
T ss_pred eecCCceEEeeccCCcCc-cccCCccc-cCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccC
Confidence 999999999999875432 11222221 2334555554322 2223333333333344443333333320 0012
Q ss_pred ceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCc
Q 018858 148 ICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPL 227 (349)
Q Consensus 148 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 227 (349)
.+.-+.++| +....+++..|+.|+++|..++
T Consensus 491 ~in~vVs~~------------------------------------~~~~~~~~hed~~Ir~~dn~~~------------- 521 (577)
T KOG0642|consen 491 QINKVVSHP------------------------------------TADITFTAHEDRSIRFFDNKTG------------- 521 (577)
T ss_pred ccceEEecC------------------------------------CCCeeEecccCCceeccccccc-------------
Confidence 344455555 6788899999999999999875
Q ss_pred cceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCC
Q 018858 228 KGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 299 (349)
.+++....|...++++++. |+|.+|++++.|+.+++|.+...
T Consensus 522 ---------------------------~~l~s~~a~~~svtslai~---~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 522 ---------------------------KILHSMVAHKDSVTSLAID---PNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred ---------------------------ccchheeeccceecceeec---CCCceEEeecCCceeehhhccch
Confidence 6667778899999999999 89999999999999999999875
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-19 Score=143.76 Aligned_cols=228 Identities=19% Similarity=0.258 Sum_probs=184.3
Q ss_pred eEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceee
Q 018858 19 TCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLES 98 (349)
Q Consensus 19 ~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 98 (349)
..+.++.+ |.+|+.|+..|.+-.+|..++++...+.. ...|..+.|..+.+++|++- ...++|||-. |....++..
T Consensus 133 Y~~~ytrn-GrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~-GtElHClk~ 208 (545)
T KOG1272|consen 133 YHLDYTRN-GRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQ-KKYVYVYDNN-GTELHCLKR 208 (545)
T ss_pred eeeeecCC-ccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhh-hceEEEecCC-CcEEeehhh
Confidence 45678877 89999999999999999999999888874 56789999988888777665 6779999965 444555544
Q ss_pred ccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCce
Q 018858 99 YNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAF 178 (349)
Q Consensus 99 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (349)
. ..|..+.|-|.--+|++++..|.++--|+..|+.+..+. ...+.+..++-+|
T Consensus 209 ~----~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~-t~~G~~~vm~qNP---------------------- 261 (545)
T KOG1272|consen 209 H----IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIR-TGAGRTDVMKQNP---------------------- 261 (545)
T ss_pred c----CchhhhcccchhheeeecccCCceEEEeechhhhhHHHH-ccCCccchhhcCC----------------------
Confidence 2 678889999988889999999999999999999999988 6777888888888
Q ss_pred eEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeee
Q 018858 179 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDY 258 (349)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (349)
-+..+-+|...|+|.+|..... +++.
T Consensus 262 --------------~NaVih~GhsnGtVSlWSP~sk----------------------------------------ePLv 287 (545)
T KOG1272|consen 262 --------------YNAVIHLGHSNGTVSLWSPNSK----------------------------------------EPLV 287 (545)
T ss_pred --------------ccceEEEcCCCceEEecCCCCc----------------------------------------chHH
Confidence 6778889999999999999874 5666
Q ss_pred eecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEee
Q 018858 259 SVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD 338 (349)
Q Consensus 259 ~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 338 (349)
.+..|.++|.+|++. ++|+|++|.|.|..++|||++...+ +..... .-+...++++. .| +++++
T Consensus 288 KiLcH~g~V~siAv~---~~G~YMaTtG~Dr~~kIWDlR~~~q---------l~t~~t-p~~a~~ls~Sq-kg--lLA~~ 351 (545)
T KOG1272|consen 288 KILCHRGPVSSIAVD---RGGRYMATTGLDRKVKIWDLRNFYQ---------LHTYRT-PHPASNLSLSQ-KG--LLALS 351 (545)
T ss_pred HHHhcCCCcceEEEC---CCCcEEeecccccceeEeeeccccc---------cceeec-CCCcccccccc-cc--ceeee
Confidence 777899999999999 8999999999999999999999742 222222 33556667754 33 55566
Q ss_pred CCCeEEEee
Q 018858 339 TSKVVKVYS 347 (349)
Q Consensus 339 ~dg~i~iw~ 347 (349)
....|.||.
T Consensus 352 ~G~~v~iw~ 360 (545)
T KOG1272|consen 352 YGDHVQIWK 360 (545)
T ss_pred cCCeeeeeh
Confidence 666788884
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-18 Score=132.40 Aligned_cols=307 Identities=12% Similarity=0.112 Sum_probs=199.2
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEE-EeCCCeEEEEEccCCCccc
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIY-VSSGKEVKSFDVHMPASWR 94 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~ 94 (349)
+.|.-+.|..+.-.+|.....++.|.+|++...+-...++....++.+++|+|+|+.|+. ...+-.|.+|.+.+.+..
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~- 127 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY- 127 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE-
Confidence 456667888774445666788899999999998888889988999999999999976655 456789999999874321
Q ss_pred ceeeccCcccceEEEEEccCCCEEEEEcCCCc---EEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCc
Q 018858 95 PLESYNYNKEEINQIVCNPKSSFLACADDGGD---VKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAG 171 (349)
Q Consensus 95 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~---i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 171 (349)
.++..+..+..++|+|+|++.+..++... +.+...+....++.++ ...-..+.+.|+|||.|+...|......
T Consensus 128 ---~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~-~dT~DltgieWsPdg~~laVwd~~Leyk 203 (447)
T KOG4497|consen 128 ---LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFK-LDTIDLTGIEWSPDGNWLAVWDNVLEYK 203 (447)
T ss_pred ---EecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcC-CCcccccCceECCCCcEEEEecchhhhe
Confidence 12223456788999999999998876432 2233233445556666 5566788999999999998777652222
Q ss_pred --cccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCC------------------CCCCcccee
Q 018858 172 --QCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS------------------TTKPLKGSQ 231 (349)
Q Consensus 172 --~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------------------~~~~~~~~~ 231 (349)
.......+..++++| .+++|++|+.|+.+|+.+--+-+....+.. ...-...++
T Consensus 204 v~aYe~~lG~k~v~wsP------~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cL 277 (447)
T KOG4497|consen 204 VYAYERGLGLKFVEWSP------CNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCL 277 (447)
T ss_pred eeeeeeccceeEEEecc------ccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhccccc
Confidence 222335678888988 799999999999998866543211111100 001112233
Q ss_pred eeeccccEEEEeeeeeecCce---eeeeee------eecCCCcceEEEEEeeecCCccEEEEeeCC--CeEEEEecCCCc
Q 018858 232 STSKVNIRDAEMEILDQSGGK---RLHLDY------SVGGHTAAASCVAFSMFGERGKYLISGGND--KLVKVWDCSRFQ 300 (349)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~------~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d--~~i~vwd~~~~~ 300 (349)
.|.|..-..- .+.....+.. ....+. .+......+.-++|+ +|..|++|-... +.+.+||++..
T Consensus 278 sf~p~~~~a~-~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs---~Ds~y~aTrnd~~PnalW~Wdlq~l- 352 (447)
T KOG4497|consen 278 SFTPTDLEAH-IWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFS---CDSTYAATRNDKYPNALWLWDLQNL- 352 (447)
T ss_pred ccCCCccccC-ccccchhhhhhhhcceeeecccCCCCCCCcccccceeeec---CCceEEeeecCCCCceEEEEechhh-
Confidence 4433211000 0000000000 001111 122234467889999 899999887643 78999999985
Q ss_pred ceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 301 GVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.+........+|....|.|... .|+.+.....+++|..
T Consensus 353 ---------~l~avLiQk~piraf~WdP~~p-rL~vctg~srLY~W~p 390 (447)
T KOG4497|consen 353 ---------KLHAVLIQKHPIRAFEWDPGRP-RLVVCTGKSRLYFWAP 390 (447)
T ss_pred ---------hhhhhhhhccceeEEEeCCCCc-eEEEEcCCceEEEEcC
Confidence 3445555667899999999555 4666666667999975
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-18 Score=140.06 Aligned_cols=218 Identities=16% Similarity=0.234 Sum_probs=149.9
Q ss_pred CCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeE-EEEEe-------cCCCEEEEEeCCCeEEE
Q 018858 13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVT-SLCFK-------SGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~-~~~~~-------~~~~~l~~~~~dg~i~i 84 (349)
-|...|.|+.|+.. ...+.+++.+-.+.-||+.+.. ...+.-....+. .+..- ...+.++.++.||.+.+
T Consensus 12 r~~e~vc~v~w~~~-eei~~~~dDh~~~~~~~~~~~s-~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~i 89 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSN-EEIYFVSDDHQIFKWSDVSRDS-VEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVI 89 (737)
T ss_pred ccceeEEeeccccc-ceEEEeccCceEEEeecccchh-hhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEE
Confidence 47777889999886 5666665554444444543322 111111111111 11111 13457888999999998
Q ss_pred EEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCC
Q 018858 85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLP 164 (349)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 164 (349)
.+-. .+.-.....|.+.+.+-.|+|+|.-|+++++||.|++|. ++|-...++. ....+|+|++|.|+
T Consensus 90 l~k~----~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~-Q~~~~v~c~~W~p~------- 156 (737)
T KOG1524|consen 90 LNKS----ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVV-QNEESIRCARWAPN------- 156 (737)
T ss_pred eccc----chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHh-hcCceeEEEEECCC-------
Confidence 8643 244455667889999999999999999999999999998 5665555555 56788999999994
Q ss_pred CCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEee
Q 018858 165 ENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME 244 (349)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (349)
..+.+.+.+ +.+.|=.+..+
T Consensus 157 ----------------------------S~~vl~c~g--~h~~IKpL~~n------------------------------ 176 (737)
T KOG1524|consen 157 ----------------------------SNSIVFCQG--GHISIKPLAAN------------------------------ 176 (737)
T ss_pred ----------------------------CCceEEecC--CeEEEeecccc------------------------------
Confidence 445555443 44555444432
Q ss_pred eeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEE
Q 018858 245 ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWL 324 (349)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 324 (349)
..+...++|.+-|.++.|+ +...++++|++|-..+|||-.. ..+.....|..+|+++
T Consensus 177 ----------~k~i~WkAHDGiiL~~~W~---~~s~lI~sgGED~kfKvWD~~G----------~~Lf~S~~~ey~ITSv 233 (737)
T KOG1524|consen 177 ----------SKIIRWRAHDGLVLSLSWS---TQSNIIASGGEDFRFKIWDAQG----------ANLFTSAAEEYAITSV 233 (737)
T ss_pred ----------cceeEEeccCcEEEEeecC---ccccceeecCCceeEEeecccC----------cccccCChhccceeee
Confidence 2334677899999999999 8899999999999999999876 4455555666677777
Q ss_pred Eeec
Q 018858 325 CTTP 328 (349)
Q Consensus 325 ~~~~ 328 (349)
+|+|
T Consensus 234 a~np 237 (737)
T KOG1524|consen 234 AFNP 237 (737)
T ss_pred eecc
Confidence 7766
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-17 Score=126.97 Aligned_cols=216 Identities=13% Similarity=0.132 Sum_probs=169.1
Q ss_pred eecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcC
Q 018858 54 TDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIR 133 (349)
Q Consensus 54 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 133 (349)
+..-.++|++.+|+++...+|++-....|.||........+...++..|...|+.+.|+|..+.|++++.|..-++|...
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence 33345799999999999999999999999999998776678888999999999999999999999999999999999984
Q ss_pred -Cc--eEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEE
Q 018858 134 -QH--CLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVIN 210 (349)
Q Consensus 134 -~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d 210 (349)
.+ ++...+. .++...+++.|+| .++.|++|+.-..|.+|-
T Consensus 86 ~~~~WkptlvLl-RiNrAAt~V~WsP------------------------------------~enkFAVgSgar~isVcy 128 (361)
T KOG1523|consen 86 SGGTWKPTLVLL-RINRAATCVKWSP------------------------------------KENKFAVGSGARLISVCY 128 (361)
T ss_pred CCCeeccceeEE-EeccceeeEeecC------------------------------------cCceEEeccCccEEEEEE
Confidence 33 3444455 5888999999999 789999999999999998
Q ss_pred ccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceee-eeeeeecCCCcceEEEEEeeecCCccEEEEeeCCC
Q 018858 211 IESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRL-HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDK 289 (349)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~ 289 (349)
++.. ..+ -..+.-+.+...|+++.|+ |++-+|++|+.|+
T Consensus 129 ~E~E-------------------------------------NdWWVsKhikkPirStv~sldWh---pnnVLlaaGs~D~ 168 (361)
T KOG1523|consen 129 YEQE-------------------------------------NDWWVSKHIKKPIRSTVTSLDWH---PNNVLLAAGSTDG 168 (361)
T ss_pred Eecc-------------------------------------cceehhhhhCCccccceeeeecc---CCcceecccccCc
Confidence 8752 111 1122334567889999999 8999999999999
Q ss_pred eEEEEecCCCcce-----e----cccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 290 LVKVWDCSRFQGV-----Q----TSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 290 ~i~vwd~~~~~~~-----~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
..|||..--.... . ..+.+.++.......+.+..+.|+| .|..|+-.+.|+.+.+=|
T Consensus 169 k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~-sG~~lawv~Hds~v~~~d 234 (361)
T KOG1523|consen 169 KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSP-SGNRLAWVGHDSTVSFVD 234 (361)
T ss_pred ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCC-CCCEeeEecCCCceEEee
Confidence 9999975322111 0 0111233334445667899999977 888999999999887644
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-19 Score=153.65 Aligned_cols=239 Identities=17% Similarity=0.159 Sum_probs=173.7
Q ss_pred EEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEE
Q 018858 51 QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKII 130 (349)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 130 (349)
+..+.+|...|+|..|...|.++++|+.|..++||..++. ..+....+|.+.++.++.+.+.-++++++.|..|++|
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~---~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA---RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVW 259 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccch---hhhccCCCCccccchhccchhhhhhhhcccCceEEEE
Confidence 3345679999999999999999999999999999998864 6677888999999999999888899999999999999
Q ss_pred EcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEE
Q 018858 131 DIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVIN 210 (349)
Q Consensus 131 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d 210 (349)
.+..+.++..+. +|.+.|++++|+| ..+.+.||++++||
T Consensus 260 rl~~~~pvsvLr-ghtgavtaiafsP----------------------------------------~~sss~dgt~~~wd 298 (1113)
T KOG0644|consen 260 RLPDGAPVSVLR-GHTGAVTAIAFSP----------------------------------------RASSSDDGTCRIWD 298 (1113)
T ss_pred ecCCCchHHHHh-ccccceeeeccCc----------------------------------------cccCCCCCceEecc
Confidence 999999999999 9999999999999 23678899999999
Q ss_pred ccCceeeeecCCC----CCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEee
Q 018858 211 IESELNISRSKST----TKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG 286 (349)
Q Consensus 211 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~ 286 (349)
.+-... .....+ .+..+..+-+...+...+ ++..++.... .....+..+...+.-+..+. .-..+.+++-
T Consensus 299 ~r~~~~-~y~prp~~~~~~~~~~s~~~~~~~~~f~-Tgs~d~ea~n--~e~~~l~~~~~~lif~t~ss--d~~~~~~~ar 372 (1113)
T KOG0644|consen 299 ARLEPR-IYVPRPLKFTEKDLVDSILFENNGDRFL-TGSRDGEARN--HEFEQLAWRSNLLIFVTRSS--DLSSIVVTAR 372 (1113)
T ss_pred cccccc-ccCCCCCCcccccceeeeeccccccccc-cccCCccccc--chhhHhhhhccceEEEeccc--cccccceeee
Confidence 982111 111111 112223333333333333 1111111100 00011111222111111110 1124666777
Q ss_pred CCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 287 NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 287 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.+..+.+|++.++ .+.....+|...+..+.++|.+.....+++.||+..|||+
T Consensus 373 ~~~~~~vwnl~~g---------~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi 425 (1113)
T KOG0644|consen 373 NDHRLCVWNLYTG---------QLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDI 425 (1113)
T ss_pred eeeEeeeeecccc---------hhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeec
Confidence 7888999999998 6778888999999999999999989999999999999996
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-17 Score=141.02 Aligned_cols=225 Identities=12% Similarity=0.069 Sum_probs=149.4
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCC---CcEEEEECCCCcE--EEEeecCCCCeEEEEEecCCCEEEEEe-
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGED---GCICWFDLRSKDV--QLVTDVGNGPVTSLCFKSGNEDIIYVS- 77 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~d---g~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~- 77 (349)
.+...+.+..|...+.+..|+|+ ++.|+..+.+ ..|++||+.+++. +..+.++ ...++|+|+|+.|+.++
T Consensus 192 dg~~~~~lt~~~~~v~~p~wSPD-G~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~ 267 (429)
T PRK01742 192 DGFNQFIVNRSSQPLMSPAWSPD-GSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASS 267 (429)
T ss_pred CCCCceEeccCCCccccceEcCC-CCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEe
Confidence 34556778888889999999999 7777766543 4699999988764 3333333 34689999999988765
Q ss_pred CCCeEEEE--EccCCCcccceeeccCcccceEEEEEccCCCEEEEEc-CCCcEEEEEcCCc-eEeceeccccccceeEEE
Q 018858 78 SGKEVKSF--DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACAD-DGGDVKIIDIRQH-CLYKSLRAGHSSICSSVQ 153 (349)
Q Consensus 78 ~dg~i~iw--d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~-~~~~~~~~~~~~~v~~~~ 153 (349)
.+|.+.|| |+.++. . ..+..+...+....|+|+++.|+..+ .+|...+|++... .....+. +.. ....
T Consensus 268 ~~g~~~Iy~~d~~~~~-~---~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~--~~~--~~~~ 339 (429)
T PRK01742 268 KDGVLNIYVMGANGGT-P---SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVG--GRG--YSAQ 339 (429)
T ss_pred cCCcEEEEEEECCCCC-e---EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEec--CCC--CCcc
Confidence 57765555 555432 2 22333445678899999999877554 5778888876522 1122222 222 3466
Q ss_pred EccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeee
Q 018858 154 FIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQST 233 (349)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 233 (349)
|+| +++.++..+.++ +.+||+.++..
T Consensus 340 ~Sp------------------------------------DG~~ia~~~~~~-i~~~Dl~~g~~----------------- 365 (429)
T PRK01742 340 ISA------------------------------------DGKTLVMINGDN-VVKQDLTSGST----------------- 365 (429)
T ss_pred CCC------------------------------------CCCEEEEEcCCC-EEEEECCCCCe-----------------
Confidence 777 788888877765 55689886421
Q ss_pred eccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeee
Q 018858 234 SKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIK 313 (349)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 313 (349)
. .+..+ .....+.|+ |+|++|+.++.++...+|++..... .....
T Consensus 366 ---------------------~---~lt~~-~~~~~~~~s---PdG~~i~~~s~~g~~~~l~~~~~~G-------~~~~~ 410 (429)
T PRK01742 366 ---------------------E---VLSST-FLDESPSIS---PNGIMIIYSSTQGLGKVLQLVSADG-------RFKAR 410 (429)
T ss_pred ---------------------E---EecCC-CCCCCceEC---CCCCEEEEEEcCCCceEEEEEECCC-------CceEE
Confidence 0 11111 112356788 8999999999999888887642110 45556
Q ss_pred ccccccceEEEEeecC
Q 018858 314 NINLNKKVNWLCTTPT 329 (349)
Q Consensus 314 ~~~~~~~v~~~~~~~~ 329 (349)
+..|.+.+...+|+|.
T Consensus 411 l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 411 LPGSDGQVKFPAWSPY 426 (429)
T ss_pred ccCCCCCCCCcccCCC
Confidence 6678888889999884
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.8e-16 Score=120.55 Aligned_cols=282 Identities=13% Similarity=0.074 Sum_probs=180.9
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEee-cCCCCeEEEEEecCCC-EEEEEeCCCeEEEEEccCC-Cc
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD-VGNGPVTSLCFKSGNE-DIIYVSSGKEVKSFDVHMP-AS 92 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~-~~ 92 (349)
-.+.-++|++. -..++++..|-.|++|+-.. +....++ .....|++++|-|.+. .|+.|+..| |.+|..... ..
T Consensus 99 ~dlr~~aWhqH-~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~ 175 (445)
T KOG2139|consen 99 IDLRGVAWHQH-IIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNA 175 (445)
T ss_pred cceeeEeechh-hhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccc
Confidence 45778899986 66788999999999999766 4334444 2457899999999654 466666544 999976531 11
Q ss_pred cc----------ceeeccCcccceEEEEEccCCCEEEEEcC-CCcEEEEEcCCceEeceeccccccceeEEEEccCCCCC
Q 018858 93 WR----------PLESYNYNKEEINQIVCNPKSSFLACADD-GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE 161 (349)
Q Consensus 93 ~~----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 161 (349)
.+ .+...++| ..|++++|++||..+++++- +..|.|||..++..+.... ...+.++-+.|+|
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~-~glgg~slLkwSP----- 248 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP-KGLGGFSLLKWSP----- 248 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc-cCCCceeeEEEcC-----
Confidence 11 11223444 68999999999999988874 6679999999887665554 4566788899999
Q ss_pred CCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEE
Q 018858 162 GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA 241 (349)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (349)
++.+|+.++-|+..++|.......... .......+....|+|+|++|+
T Consensus 249 -------------------------------dgd~lfaAt~davfrlw~e~q~wt~er-w~lgsgrvqtacWspcGsfLL 296 (445)
T KOG2139|consen 249 -------------------------------DGDVLFAATCDAVFRLWQENQSWTKER-WILGSGRVQTACWSPCGSFLL 296 (445)
T ss_pred -------------------------------CCCEEEEecccceeeeehhcccceecc-eeccCCceeeeeecCCCCEEE
Confidence 899999999999999996654322221 122234788899999999987
Q ss_pred Eeeeeeec------------Cc-----eeeeeeeeec------C---CCcceEEEEEeeecCCccEEEEeeCCC------
Q 018858 242 EMEILDQS------------GG-----KRLHLDYSVG------G---HTAAASCVAFSMFGERGKYLISGGNDK------ 289 (349)
Q Consensus 242 ~~~~~~~~------------~~-----~~~~~~~~~~------~---h~~~i~~i~~~~~~~~~~~l~s~~~d~------ 289 (349)
.+...... .. ....++..+. + --+.+.+++|+ |.|.+||+.-..+
T Consensus 297 f~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawD---psGeyLav~fKg~~~v~~~ 373 (445)
T KOG2139|consen 297 FACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWD---PSGEYLAVIFKGQSFVLLC 373 (445)
T ss_pred EEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeEC---CCCCEEEEEEcCCchhhhh
Confidence 63211110 00 0111111111 1 13578899999 8999999875443
Q ss_pred --eEEEEecCCCcceecccccceeeeccccccceEEEEeec--CCCCcEEEeeCCCeEEEeeC
Q 018858 290 --LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP--TESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 290 --~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~iw~~ 348 (349)
.|.+||.+..... .....-.........+.|.| +++.+|..+=+.|.+.-|++
T Consensus 374 k~~i~~fdtr~sp~v------els~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 374 KLHISRFDTRKSPPV------ELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred hhhhhhhcccccCce------EEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 3677877664211 01100011111234455554 45556666666777766654
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.4e-17 Score=133.90 Aligned_cols=138 Identities=17% Similarity=0.280 Sum_probs=114.1
Q ss_pred ceeeeEEEEecCCCceEEEeCCCCcEEEEECCC--------------CcE--------------EEEeecCCCCeEEEEE
Q 018858 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRS--------------KDV--------------QLVTDVGNGPVTSLCF 66 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~--------------~~~--------------~~~~~~~~~~v~~~~~ 66 (349)
+..|+|+.|-|.+...++.+-.+|.+++||.+. +.. +..+......|...+|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 468999999997677888888899999997531 111 1111223457888999
Q ss_pred ecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccc
Q 018858 67 KSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHS 146 (349)
Q Consensus 67 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 146 (349)
+|||++||+.+.||.++|||+.+.+....++.+ -+...|++|+|||++|++|++|.-|.||.+..++++..-. +|.
T Consensus 299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSY---FGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq-GHk 374 (636)
T KOG2394|consen 299 SPDGKYLATVSQDGFLRIFDFDTQELLGVMKSY---FGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ-GHK 374 (636)
T ss_pred cCCCceEEEEecCceEEEeeccHHHHHHHHHhh---ccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecc-ccc
Confidence 999999999999999999999975444444444 4789999999999999999999999999999999999988 999
Q ss_pred cceeEEEEcc
Q 018858 147 SICSSVQFIP 156 (349)
Q Consensus 147 ~~v~~~~~~~ 156 (349)
+.|..++|.|
T Consensus 375 SWVs~VaFDp 384 (636)
T KOG2394|consen 375 SWVSVVAFDP 384 (636)
T ss_pred cceeeEeecc
Confidence 9999999998
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-16 Score=136.66 Aligned_cols=211 Identities=16% Similarity=0.158 Sum_probs=143.1
Q ss_pred CCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCC---CeEEEEEccCCCcccceeeccCcccceEEEEEcc
Q 018858 37 DGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG---KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNP 113 (349)
Q Consensus 37 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 113 (349)
+..|.+||.+... ...+..+...+...+|+|+|+.|+.++.+ ..|++||+.+++. ..+..+.+ ....++|+|
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~-~~l~~~~g---~~~~~~wSP 257 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR-KVVASFRG---HNGAPAFSP 257 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce-EEEecCCC---ccCceeECC
Confidence 4789999987554 45566678889999999999999988754 4799999987642 23333432 344689999
Q ss_pred CCCEEEEEc-CCCcEEE--EEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCccccc
Q 018858 114 KSSFLACAD-DGGDVKI--IDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADML 190 (349)
Q Consensus 114 ~~~~l~~~~-~dg~i~i--~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (349)
+++.|+.+. .+|.+.| ||+.+++. ..+. .+...+....|+|
T Consensus 258 DG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt-~~~~~~~~~~wSp---------------------------------- 301 (429)
T PRK01742 258 DGSRLAFASSKDGVLNIYVMGANGGTP-SQLT-SGAGNNTEPSWSP---------------------------------- 301 (429)
T ss_pred CCCEEEEEEecCCcEEEEEEECCCCCe-Eeec-cCCCCcCCEEECC----------------------------------
Confidence 999888764 6776555 56655554 4444 4556678899999
Q ss_pred CCCCcEEEEE-cCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEE
Q 018858 191 DKTNKICVVA-KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASC 269 (349)
Q Consensus 191 ~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 269 (349)
+++.|+.. ..+|...+|+++... .....+ .+.. ..
T Consensus 302 --DG~~i~f~s~~~g~~~I~~~~~~~---------------------------------------~~~~~l-~~~~--~~ 337 (429)
T PRK01742 302 --DGQSILFTSDRSGSPQVYRMSASG---------------------------------------GGASLV-GGRG--YS 337 (429)
T ss_pred --CCCEEEEEECCCCCceEEEEECCC---------------------------------------CCeEEe-cCCC--CC
Confidence 77766644 467888888876420 000111 2322 34
Q ss_pred EEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 270 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 270 i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
..|+ |+|++|+..+.++ +.+||+.++.. ......+ ....+.|+| +|++|+.++.++.+.+|.+
T Consensus 338 ~~~S---pDG~~ia~~~~~~-i~~~Dl~~g~~---------~~lt~~~--~~~~~~~sP-dG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 338 AQIS---ADGKTLVMINGDN-VVKQDLTSGST---------EVLSSTF--LDESPSISP-NGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred ccCC---CCCCEEEEEcCCC-EEEEECCCCCe---------EEecCCC--CCCCceECC-CCCEEEEEEcCCCceEEEE
Confidence 6788 8999998887765 56699988632 1111111 224567877 8999999999998887763
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-16 Score=129.43 Aligned_cols=240 Identities=17% Similarity=0.194 Sum_probs=147.3
Q ss_pred EEEEecCCCceEEEeCCCCcEEEEECCCCcE----EEEeecCCCCeEEEEE-----ecCCCEEEEEeCCCeEEEEEccCC
Q 018858 20 CCIASRDRPGFVASSGEDGCICWFDLRSKDV----QLVTDVGNGPVTSLCF-----KSGNEDIIYVSSGKEVKSFDVHMP 90 (349)
Q Consensus 20 ~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~-----~~~~~~l~~~~~dg~i~iwd~~~~ 90 (349)
...++-. +++|+-.- ...+++|++..+.. +...........+-+| .|.+--++.|-..|.|++.|....
T Consensus 128 ~~~~~~~-gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~ 205 (636)
T KOG2394|consen 128 NTNQSGK-GDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINF 205 (636)
T ss_pred eccccCC-CCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchhh
Confidence 3334444 44444322 23588888774321 1111111222233334 345666888888899999987652
Q ss_pred Ccccceee-ccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCce-----EeceeccccccceeEEEEccCCCCCCC
Q 018858 91 ASWRPLES-YNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHC-----LYKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 91 ~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
+..+.+.. ....+..++|+.|-|.+ ..|+.+-.+|.+++||..-.. ....++ ...-..+--. ...
T Consensus 206 ~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k---~~~~f~i~t~-----ksk 277 (636)
T KOG2394|consen 206 EVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALK---DGDQFAILTS-----KSK 277 (636)
T ss_pred HHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccC---CCCeeEEeee-----ecc
Confidence 21111111 11124679999999854 667777889999999864110 000011 0000000000 000
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
...+...--.+....++..+|+| ||++||+.+.||.+||||..+.
T Consensus 278 ~~rNPv~~w~~~~g~in~f~FS~------DG~~LA~VSqDGfLRvF~fdt~----------------------------- 322 (636)
T KOG2394|consen 278 KTRNPVARWHIGEGSINEFAFSP------DGKYLATVSQDGFLRIFDFDTQ----------------------------- 322 (636)
T ss_pred ccCCccceeEeccccccceeEcC------CCceEEEEecCceEEEeeccHH-----------------------------
Confidence 00000000011223667777777 9999999999999999999974
Q ss_pred eeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEE
Q 018858 244 EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNW 323 (349)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 323 (349)
+++..++..-+...|+.|+ |||+|+++|++|-.|.||.+... +++..-.+|+..|..
T Consensus 323 -----------eLlg~mkSYFGGLLCvcWS---PDGKyIvtGGEDDLVtVwSf~er---------RVVARGqGHkSWVs~ 379 (636)
T KOG2394|consen 323 -----------ELLGVMKSYFGGLLCVCWS---PDGKYIVTGGEDDLVTVWSFEER---------RVVARGQGHKSWVSV 379 (636)
T ss_pred -----------HHHHHHHhhccceEEEEEc---CCccEEEecCCcceEEEEEeccc---------eEEEeccccccceee
Confidence 3444444455788999999 99999999999999999999998 788889999999999
Q ss_pred EEee
Q 018858 324 LCTT 327 (349)
Q Consensus 324 ~~~~ 327 (349)
++|.
T Consensus 380 VaFD 383 (636)
T KOG2394|consen 380 VAFD 383 (636)
T ss_pred Eeec
Confidence 9997
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-16 Score=137.80 Aligned_cols=249 Identities=14% Similarity=0.160 Sum_probs=166.0
Q ss_pred eeeeEEEEec-CCCceEEEeCCCCcEEEEECC-C----CcEEEEee---cC----CCCeEEEEEecCCCEEEEEeCCCeE
Q 018858 16 ATATCCIASR-DRPGFVASSGEDGCICWFDLR-S----KDVQLVTD---VG----NGPVTSLCFKSGNEDIIYVSSGKEV 82 (349)
Q Consensus 16 ~~i~~~~~~~-~~~~~l~t~~~dg~i~vwd~~-~----~~~~~~~~---~~----~~~v~~~~~~~~~~~l~~~~~dg~i 82 (349)
..|+.+.+-. ++..++++|+.||.|+||+-. + .+++..+. ++ .+.=.-+.|.....+|++++.-..|
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~I 1189 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSI 1189 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEE
Confidence 4578877654 446789999999999999742 2 22332222 11 1111446787777778888878999
Q ss_pred EEEEccCCCcccceeeccCcccceEEEEEcc-CCCEEEEEcCCCcEEEEEcCCc---eEeceeccccccc--eeEEEEcc
Q 018858 83 KSFDVHMPASWRPLESYNYNKEEINQIVCNP-KSSFLACADDGGDVKIIDIRQH---CLYKSLRAGHSSI--CSSVQFIP 156 (349)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~--v~~~~~~~ 156 (349)
+|||.+.......+.. +....++++.-+. .|+.+++|..||.|++||.+.. ..+...+ .|+.. |..+.+.+
T Consensus 1190 RIWDa~~E~~~~diP~--~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R-~h~~~~~Iv~~slq~ 1266 (1387)
T KOG1517|consen 1190 RIWDAHKEQVVADIPY--GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR-EHNDVEPIVHLSLQR 1266 (1387)
T ss_pred EEEecccceeEeeccc--CCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeec-ccCCcccceeEEeec
Confidence 9999986432222221 2234566665543 4689999999999999999843 2455566 67666 88888888
Q ss_pred CCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeecc
Q 018858 157 WKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKV 236 (349)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (349)
+| . ..|++|+.+|.|++||++....
T Consensus 1267 ~G----------------------------------~-~elvSgs~~G~I~~~DlR~~~~-------------------- 1291 (1387)
T KOG1517|consen 1267 QG----------------------------------L-GELVSGSQDGDIQLLDLRMSSK-------------------- 1291 (1387)
T ss_pred CC----------------------------------C-cceeeeccCCeEEEEecccCcc--------------------
Confidence 42 2 2699999999999999996310
Q ss_pred ccEEEEeeeeeecCceeeeeeeeecCC---CcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeee
Q 018858 237 NIRDAEMEILDQSGGKRLHLDYSVGGH---TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIK 313 (349)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~h---~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 313 (349)
........| .+..+++..+ +....+|+|+. +.|+||++............. .
T Consensus 1292 ------------------e~~~~iv~~~~yGs~lTal~VH---~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~---F 1346 (1387)
T KOG1517|consen 1292 ------------------ETFLTIVAHWEYGSALTALTVH---EHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPG---F 1346 (1387)
T ss_pred ------------------cccceeeeccccCccceeeeec---cCCCeeeecCc-ceEEEEecChhhhcccccCcc---c
Confidence 111111122 2258999999 88899999998 999999998743211000000 1
Q ss_pred ccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 314 NINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 314 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.....+.+.+++|+|.. -.|++|+.|..|.||..
T Consensus 1347 ~~q~~gs~scL~FHP~~-~llAaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1347 MGQRIGSVSCLAFHPHR-LLLAAGSADSTVSIYSC 1380 (1387)
T ss_pred ccCcCCCcceeeecchh-HhhhhccCCceEEEeec
Confidence 11234567999999943 36888889999999864
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.6e-15 Score=123.83 Aligned_cols=235 Identities=15% Similarity=0.187 Sum_probs=147.9
Q ss_pred EEEeCCCCcEEEEECCC-Cc--EEEEeecCCCCeEEEEEecCCCEEEEEe-CCCeEEEEEccCCCcccceeeccCcccce
Q 018858 31 VASSGEDGCICWFDLRS-KD--VQLVTDVGNGPVTSLCFKSGNEDIIYVS-SGKEVKSFDVHMPASWRPLESYNYNKEEI 106 (349)
Q Consensus 31 l~t~~~dg~i~vwd~~~-~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~v 106 (349)
+++...++.|.+|++.+ ++ .+..+. +......++++|++++|++++ .++.|.+|++............. .....
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p 82 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSP 82 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCc
Confidence 44446789999999964 43 345554 345677899999999987765 47889999997322222223222 12356
Q ss_pred EEEEEccCCCEEEEEcC-CCcEEEEEcCC-ce---EeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEE
Q 018858 107 NQIVCNPKSSFLACADD-GGDVKIIDIRQ-HC---LYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHA 181 (349)
Q Consensus 107 ~~~~~~~~~~~l~~~~~-dg~i~i~d~~~-~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (349)
..++++|+++++++++. ++.|.+|++.+ +. .+..+. +......++++|
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~--~~~~~~~~~~~p------------------------- 135 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE--GLEGCHSANIDP------------------------- 135 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc--CCCcccEeEeCC-------------------------
Confidence 78999999998887764 78899999974 22 222222 223456677777
Q ss_pred eecCcccccCCCCcEEEEE-cCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeee
Q 018858 182 IAIPDADMLDKTNKICVVA-KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSV 260 (349)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (349)
++++++++ ..++.|.+||+++...+.... ......
T Consensus 136 -----------~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~---------------------------------~~~~~~ 171 (330)
T PRK11028 136 -----------DNRTLWVPCLKEDRIRLFTLSDDGHLVAQE---------------------------------PAEVTT 171 (330)
T ss_pred -----------CCCEEEEeeCCCCEEEEEEECCCCcccccC---------------------------------CCceec
Confidence 77777554 467999999997521100000 000011
Q ss_pred cCCCcceEEEEEeeecCCccEEEEeeC-CCeEEEEecCCCcceecccccceeeeccc------cccceEEEEeecCCCCc
Q 018858 261 GGHTAAASCVAFSMFGERGKYLISGGN-DKLVKVWDCSRFQGVQTSINNDLLIKNIN------LNKKVNWLCTTPTESEN 333 (349)
Q Consensus 261 ~~h~~~i~~i~~~~~~~~~~~l~s~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~ 333 (349)
.. ......+.|+ |++++++++.+ ++.|.+|+++...... ..+..... +......+.++| ++++
T Consensus 172 ~~-g~~p~~~~~~---pdg~~lyv~~~~~~~v~v~~~~~~~~~~-----~~~~~~~~~p~~~~~~~~~~~i~~~p-dg~~ 241 (330)
T PRK11028 172 VE-GAGPRHMVFH---PNQQYAYCVNELNSSVDVWQLKDPHGEI-----ECVQTLDMMPADFSDTRWAADIHITP-DGRH 241 (330)
T ss_pred CC-CCCCceEEEC---CCCCEEEEEecCCCEEEEEEEeCCCCCE-----EEEEEEecCCCcCCCCccceeEEECC-CCCE
Confidence 11 1235678999 89999988876 8999999997421100 11111111 112233577877 8888
Q ss_pred EEEee-CCCeEEEeeC
Q 018858 334 LVVCD-TSKVVKVYSI 348 (349)
Q Consensus 334 l~~~~-~dg~i~iw~~ 348 (349)
|+++. .++.|.+|++
T Consensus 242 lyv~~~~~~~I~v~~i 257 (330)
T PRK11028 242 LYACDRTASLISVFSV 257 (330)
T ss_pred EEEecCCCCeEEEEEE
Confidence 88885 5789999986
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.3e-17 Score=126.05 Aligned_cols=164 Identities=20% Similarity=0.302 Sum_probs=135.2
Q ss_pred CCCCeEEEEEecCCC-EEEEEeCCCeEEEEEccCCC------cccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEE
Q 018858 57 GNGPVTSLCFKSGNE-DIIYVSSGKEVKSFDVHMPA------SWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKI 129 (349)
Q Consensus 57 ~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 129 (349)
...+|..+.|.++.. .+++|+.|..|++|.+..+. .+..+..+..|...|+++.|+|+|..+|+|+.+|.|.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 346889999988776 89999999999999887533 23345567789999999999999999999999999999
Q ss_pred EEcC--------C--------ceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCC
Q 018858 130 IDIR--------Q--------HCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT 193 (349)
Q Consensus 130 ~d~~--------~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (349)
|-.. + ....+.+. +|...++.++|+| +
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr-~h~~diydL~Ws~------------------------------------d 134 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLR-GHRDDIYDLAWSP------------------------------------D 134 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEec-ccccchhhhhccC------------------------------------C
Confidence 9765 2 23445566 7888999999999 8
Q ss_pred CcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEe
Q 018858 194 NKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFS 273 (349)
Q Consensus 194 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~ 273 (349)
++++++++.|..+++||+..+ .....+.+|...+..++|.
T Consensus 135 ~~~l~s~s~dns~~l~Dv~~G----------------------------------------~l~~~~~dh~~yvqgvawD 174 (434)
T KOG1009|consen 135 SNFLVSGSVDNSVRLWDVHAG----------------------------------------QLLAILDDHEHYVQGVAWD 174 (434)
T ss_pred CceeeeeeccceEEEEEeccc----------------------------------------eeEeeccccccccceeecc
Confidence 999999999999999999986 5566777888888888888
Q ss_pred eecCCccEEEEeeCCCeEEEEecCCCc
Q 018858 274 MFGERGKYLISGGNDKLVKVWDCSRFQ 300 (349)
Q Consensus 274 ~~~~~~~~l~s~~~d~~i~vwd~~~~~ 300 (349)
|-++++++-+.|...+++++....
T Consensus 175 ---pl~qyv~s~s~dr~~~~~~~~~~~ 198 (434)
T KOG1009|consen 175 ---PLNQYVASKSSDRHPEGFSAKLKQ 198 (434)
T ss_pred ---hhhhhhhhhccCcccceeeeeeee
Confidence 788888888888877777766543
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-14 Score=119.41 Aligned_cols=291 Identities=13% Similarity=0.153 Sum_probs=173.3
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEe-CCCeE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVS-SGKEV 82 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i 82 (349)
+.+.+.++......-..+.|+|+ ++++++++.||.|.++|+.+++.+.+++.. .....++++++|++++++. ..+.+
T Consensus 25 t~~~~~~i~~~~~~h~~~~~s~D-gr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~DG~~~~v~n~~~~~v 102 (369)
T PF02239_consen 25 TNKVVARIPTGGAPHAGLKFSPD-GRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSPDGKYVYVANYEPGTV 102 (369)
T ss_dssp T-SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE--TTTEEEEEEEETTEE
T ss_pred CCeEEEEEcCCCCceeEEEecCC-CCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcCCCCEEEEEecCCCce
Confidence 45667778765544444678998 889998999999999999999999998854 4568899999999998876 57899
Q ss_pred EEEEccCCCcccceeeccC----cccceEEEEEccCCCEE-EEEcCCCcEEEEEcCCceEe--ceeccccccceeEEEEc
Q 018858 83 KSFDVHMPASWRPLESYNY----NKEEINQIVCNPKSSFL-ACADDGGDVKIIDIRQHCLY--KSLRAGHSSICSSVQFI 155 (349)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~ 155 (349)
.++|.++.+..+.+..... ....+..+..+|....+ +.--+.+.|.+.|....+.+ ..+. .........|+
T Consensus 103 ~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~--~g~~~~D~~~d 180 (369)
T PF02239_consen 103 SVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK--VGRFPHDGGFD 180 (369)
T ss_dssp EEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE----TTEEEEEE-
T ss_pred eEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeec--ccccccccccC
Confidence 9999998655554443211 22456677778877744 45555688988898765433 2332 34456778888
Q ss_pred cCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEE-cCCCeEEEEEccCceeeeecCC---CCCCcccee
Q 018858 156 PWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA-KGDGVVDVINIESELNISRSKS---TTKPLKGSQ 231 (349)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~---~~~~~~~~~ 231 (349)
| ++++++++ ..+..|-++|.++++....... +...+...+
T Consensus 181 p------------------------------------dgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~ 224 (369)
T PF02239_consen 181 P------------------------------------DGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF 224 (369)
T ss_dssp T------------------------------------TSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE
T ss_pred c------------------------------------ccceeeecccccceeEEEeeccceEEEEeeccccccccccccc
Confidence 8 78877664 5677999999998876654322 222222211
Q ss_pred -------eeecc--ccEEEE-eeeeee--cCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEe----eCCCeEEEEe
Q 018858 232 -------STSKV--NIRDAE-MEILDQ--SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISG----GNDKLVKVWD 295 (349)
Q Consensus 232 -------~~~~~--~~~~~~-~~~~~~--~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~----~~d~~i~vwd 295 (349)
.|... +..... .+.... .....++.++++....+. .-+..+ |+++++.+. ...+.|.++|
T Consensus 225 php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~th---P~s~~vwvd~~~~~~~~~v~viD 300 (369)
T PF02239_consen 225 PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTH---PDSRYVWVDTFLNPDADTVQVID 300 (369)
T ss_dssp EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE-----TT-SEEEEE-TT-SSHT-EEEEE
T ss_pred cCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecC---CCCccEEeeccCCCCCceEEEEE
Confidence 22221 222211 121111 122355666667655555 567778 899999988 4558999999
Q ss_pred cCCCcceecccccceeeeccc-cccceEEEEeecCCCCcEEEee--CCCeEEEeeC
Q 018858 296 CSRFQGVQTSINNDLLIKNIN-LNKKVNWLCTTPTESENLVVCD--TSKVVKVYSI 348 (349)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~--~dg~i~iw~~ 348 (349)
.++. +....+.. ....+..+.|++ +|+.+..+. .++.|.+||-
T Consensus 301 ~~tl---------~~~~~i~~~~~~~~~h~ef~~-dG~~v~vS~~~~~~~i~v~D~ 346 (369)
T PF02239_consen 301 KKTL---------KVVKTITPGPGKRVVHMEFNP-DGKEVWVSVWDGNGAIVVYDA 346 (369)
T ss_dssp CCGT---------EEEE-HHHHHT--EEEEEE-T-TSSEEEEEEE--TTEEEEEET
T ss_pred CcCc---------ceeEEEeccCCCcEeccEECC-CCCEEEEEEecCCCEEEEEEC
Confidence 9997 33333322 223488899988 777666654 3347999984
|
... |
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.4e-15 Score=128.38 Aligned_cols=226 Identities=11% Similarity=0.059 Sum_probs=147.8
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeC---CCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEE-eCC
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSG---EDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYV-SSG 79 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~---~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d 79 (349)
.+...+.+..+...+.+.+|+|+ |+.|+..+ .+..|++|++.+++.... ......+...+|+|+|+.|+.. +.+
T Consensus 187 dg~~~~~lt~~~~~~~~p~wSPD-G~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~La~~~~~~ 264 (429)
T PRK03629 187 DGYNQFVVHRSPQPLMSPAWSPD-GSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKLAFALSKT 264 (429)
T ss_pred CCCCCEEeecCCCceeeeEEcCC-CCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCEEEEEEcCC
Confidence 44556777777788999999999 77776532 345799999988764332 2223344568999999998865 334
Q ss_pred C--eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCC-Cc--EEEEEcCCceEeceeccccccceeEEEE
Q 018858 80 K--EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDG-GD--VKIIDIRQHCLYKSLRAGHSSICSSVQF 154 (349)
Q Consensus 80 g--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 154 (349)
| .|++||+++++.. .+..+...+....|+|+++.|+..+.+ +. |+++|+.+++.. .+. ..........|
T Consensus 265 g~~~I~~~d~~tg~~~----~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt-~~~~~~~~~~~ 338 (429)
T PRK03629 265 GSLNLYVMDLASGQIR----QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RIT-WEGSQNQDADV 338 (429)
T ss_pred CCcEEEEEECCCCCEE----EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eee-cCCCCccCEEE
Confidence 4 5889999875432 222223457789999999988776653 44 555576665442 333 23334566788
Q ss_pred ccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCC---CeEEEEEccCceeeeecCCCCCCcccee
Q 018858 155 IPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD---GVVDVINIESELNISRSKSTTKPLKGSQ 231 (349)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~ 231 (349)
+| +|+.++..+.+ ..|.+||+.++..
T Consensus 339 Sp------------------------------------DG~~Ia~~~~~~g~~~I~~~dl~~g~~--------------- 367 (429)
T PRK03629 339 SS------------------------------------DGKFMVMVSSNGGQQHIAKQDLATGGV--------------- 367 (429)
T ss_pred CC------------------------------------CCCEEEEEEccCCCceEEEEECCCCCe---------------
Confidence 88 78877765433 3578888876421
Q ss_pred eeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCe---EEEEecCCCcceeccccc
Q 018858 232 STSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKL---VKVWDCSRFQGVQTSINN 308 (349)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~---i~vwd~~~~~~~~~~~~~ 308 (349)
..+... .......|+ |||++|+.++.++. ++++++...
T Consensus 368 --------------------------~~Lt~~-~~~~~p~~S---pDG~~i~~~s~~~~~~~l~~~~~~G~--------- 408 (429)
T PRK03629 368 --------------------------QVLTDT-FLDETPSIA---PNGTMVIYSSSQGMGSVLNLVSTDGR--------- 408 (429)
T ss_pred --------------------------EEeCCC-CCCCCceEC---CCCCEEEEEEcCCCceEEEEEECCCC---------
Confidence 111111 122356788 89999999887754 777787653
Q ss_pred ceeeeccccccceEEEEeec
Q 018858 309 DLLIKNINLNKKVNWLCTTP 328 (349)
Q Consensus 309 ~~~~~~~~~~~~v~~~~~~~ 328 (349)
....+..|.+.+...+|+|
T Consensus 409 -~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 409 -FKARLPATDGQVKFPAWSP 427 (429)
T ss_pred -CeEECccCCCCcCCcccCC
Confidence 3445556778888888876
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.4e-16 Score=122.74 Aligned_cols=246 Identities=10% Similarity=0.059 Sum_probs=171.0
Q ss_pred EEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCC---Ccccceeecc-CcccceEEEEEccCCCEEEEEcCCCcE
Q 018858 52 LVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP---ASWRPLESYN-YNKEEINQIVCNPKSSFLACADDGGDV 127 (349)
Q Consensus 52 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i 127 (349)
+.+.+|.+.|.++.|+.++++|++|+.|..+++|.++.. +..+++.... .|...|.|++|.....++++|..+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 345679999999999999999999999999999998742 2224444332 345789999999988999999999999
Q ss_pred EEEEcCCceEeceeccccc---cceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCC
Q 018858 128 KIIDIRQHCLYKSLRAGHS---SICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG 204 (349)
Q Consensus 128 ~i~d~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 204 (349)
...|+++.+.+..+. |. +.|+.+..+| ..+.|++.+.+|
T Consensus 130 I~HDiEt~qsi~V~~--~~~~~~~VY~m~~~P------------------------------------~DN~~~~~t~~~ 171 (609)
T KOG4227|consen 130 IKHDIETKQSIYVAN--ENNNRGDVYHMDQHP------------------------------------TDNTLIVVTRAK 171 (609)
T ss_pred Eeeecccceeeeeec--ccCcccceeecccCC------------------------------------CCceEEEEecCc
Confidence 999999998887776 43 3788898888 688999999999
Q ss_pred eEEEEEccCceeeeec--CCCCCCccceeeeeccccEEEEeeeeee----cCce-eeeeee------eecCCCcceEEEE
Q 018858 205 VVDVINIESELNISRS--KSTTKPLKGSQSTSKVNIRDAEMEILDQ----SGGK-RLHLDY------SVGGHTAAASCVA 271 (349)
Q Consensus 205 ~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~------~~~~h~~~i~~i~ 271 (349)
.|.+||.+..+..... ..........+.|+|....|+...+... +... ....+. .++.....-.+..
T Consensus 172 ~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~ 251 (609)
T KOG4227|consen 172 LVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSL 251 (609)
T ss_pred eEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhhee
Confidence 9999999976532222 2223445567788887766654322211 1111 111111 1221122235677
Q ss_pred EeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecccccc-------ceEEEEeecCCCCcEEEeeCCCeEE
Q 018858 272 FSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK-------KVNWLCTTPTESENLVVCDTSKVVK 344 (349)
Q Consensus 272 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~~l~~~~~dg~i~ 344 (349)
|+ |+|..|++--....=.+||+.+.. +......|.. .+.+++|. +...+++|+++-.|+
T Consensus 252 ~~---~~G~Q~msiRR~~~P~~~D~~S~R---------~~V~k~D~N~~GY~N~~T~KS~~F~--~D~~v~tGSD~~~i~ 317 (609)
T KOG4227|consen 252 WS---PSGNQFMSIRRGKCPLYFDFISQR---------CFVLKSDHNPNGYCNIKTIKSMTFI--DDYTVATGSDHWGIH 317 (609)
T ss_pred eC---CCCCeehhhhccCCCEEeeeeccc---------ceeEeccCCCCcceeeeeeeeeeee--cceeeeccCcccceE
Confidence 88 899988877666666788888752 2222222322 35566663 334699999999999
Q ss_pred EeeCC
Q 018858 345 VYSIS 349 (349)
Q Consensus 345 iw~~~ 349 (349)
+|.++
T Consensus 318 ~WklP 322 (609)
T KOG4227|consen 318 IWKLP 322 (609)
T ss_pred EEecC
Confidence 99985
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.3e-16 Score=120.30 Aligned_cols=253 Identities=11% Similarity=0.109 Sum_probs=171.6
Q ss_pred ceeeeEEEEecCCC-ceEEEeCCCCcEEEEECCCCcEEE------EeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEc
Q 018858 15 KATATCCIASRDRP-GFVASSGEDGCICWFDLRSKDVQL------VTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDV 87 (349)
Q Consensus 15 ~~~i~~~~~~~~~~-~~l~t~~~dg~i~vwd~~~~~~~~------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 87 (349)
...|..++|.-++. +.+...+.+..+..+.+....... ......++|..++.. ...|++|-.+|.+.+|..
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEec
Confidence 45677788875532 334444466677777776554432 233445677776654 346888888999999998
Q ss_pred cCCCcc-cceeeccCcccceEEEEEccCC-CEEEEEcCC--CcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCC
Q 018858 88 HMPASW-RPLESYNYNKEEINQIVCNPKS-SFLACADDG--GDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 88 ~~~~~~-~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
+.+... ..+..+..+ ..+..+.-++.. ..+++|+.. ..+.+||+.+.+.+.+-+ .-...-
T Consensus 133 k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aK-NvpnD~-------------- 196 (412)
T KOG3881|consen 133 KSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAK-NVPNDR-------------- 196 (412)
T ss_pred cCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeecc-CCCCcc--------------
Confidence 854211 112222222 456666666655 455668888 789999999876665544 111100
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
..+..+.++..+.|.+ +.....|++++.-+.+++||.+.++
T Consensus 197 -------L~LrVPvW~tdi~Fl~----g~~~~~fat~T~~hqvR~YDt~~qR---------------------------- 237 (412)
T KOG3881|consen 197 -------LGLRVPVWITDIRFLE----GSPNYKFATITRYHQVRLYDTRHQR---------------------------- 237 (412)
T ss_pred -------ccceeeeeeccceecC----CCCCceEEEEecceeEEEecCcccC----------------------------
Confidence 0011122333334433 0126789999999999999999753
Q ss_pred eeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeee-ccccccceE
Q 018858 244 EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIK-NINLNKKVN 322 (349)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~~v~ 322 (349)
+++..+.--+.+++++... |.++++++|..-+.+..||++.+ .++.. +.+..+.|.
T Consensus 238 -----------RPV~~fd~~E~~is~~~l~---p~gn~Iy~gn~~g~l~~FD~r~~---------kl~g~~~kg~tGsir 294 (412)
T KOG3881|consen 238 -----------RPVAQFDFLENPISSTGLT---PSGNFIYTGNTKGQLAKFDLRGG---------KLLGCGLKGITGSIR 294 (412)
T ss_pred -----------cceeEeccccCcceeeeec---CCCcEEEEecccchhheecccCc---------eeeccccCCccCCcc
Confidence 3444444446789999999 89999999999999999999998 45544 778899999
Q ss_pred EEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 323 WLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 323 ~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
++..+| ...+|++||-|..++|+|+
T Consensus 295 sih~hp-~~~~las~GLDRyvRIhD~ 319 (412)
T KOG3881|consen 295 SIHCHP-THPVLASCGLDRYVRIHDI 319 (412)
T ss_pred eEEEcC-CCceEEeeccceeEEEeec
Confidence 999988 6679999999999999996
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.6e-15 Score=112.77 Aligned_cols=235 Identities=12% Similarity=0.188 Sum_probs=153.5
Q ss_pred eeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCC--eEEEEEecCCCEEEE-EeCC------CeEEEEEcc
Q 018858 18 ATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGP--VTSLCFKSGNEDIIY-VSSG------KEVKSFDVH 88 (349)
Q Consensus 18 i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~-~~~d------g~i~iwd~~ 88 (349)
...++|+.| ..-++.|..+| .+||+.+.-+....-+.+.+. +..+-| ..++++. |+.+ ..|.|||=.
T Consensus 8 ~lsvs~NQD-~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 8 TLSVSFNQD-HSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred eeEEEEccC-CceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEecc
Confidence 344899987 66677766655 899998764433222223322 222222 2345544 3333 479999943
Q ss_pred CCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcC-CceEeceeccccccceeEEEEccCCCCCCCCCCC
Q 018858 89 MPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIR-QHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENN 167 (349)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 167 (349)
.. +++..+. ...+|..+.+.++ .+++.- .+.|++|... +.+.+..+. ...++---+++.|.
T Consensus 84 k~---~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~e-t~~NPkGlC~~~~~---------- 145 (346)
T KOG2111|consen 84 KE---RCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIE-TRSNPKGLCSLCPT---------- 145 (346)
T ss_pred cC---cEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeee-cccCCCceEeecCC----------
Confidence 32 3333332 2478999999765 555554 4689999987 555555554 22211112333331
Q ss_pred CCCccccCCceeEEeecCcccccCCCCcEEEE-EcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeee
Q 018858 168 GNAGQCYNPAFVHAIAIPDADMLDKTNKICVV-AKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEIL 246 (349)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (349)
.+..+||. |..-|.|.|-|+...+
T Consensus 146 ------------------------~~k~~LafPg~k~GqvQi~dL~~~~------------------------------- 170 (346)
T KOG2111|consen 146 ------------------------SNKSLLAFPGFKTGQVQIVDLASTK------------------------------- 170 (346)
T ss_pred ------------------------CCceEEEcCCCccceEEEEEhhhcC-------------------------------
Confidence 03445554 4467999999998631
Q ss_pred eecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCe-EEEEecCCCcceecccccceeeeccc--cccceEE
Q 018858 247 DQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKL-VKVWDCSRFQGVQTSINNDLLIKNIN--LNKKVNW 323 (349)
Q Consensus 247 ~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~-i~vwd~~~~~~~~~~~~~~~~~~~~~--~~~~v~~ 323 (349)
......+.+|.+.|.+++.+ .+|..+||+|..|+ |||||..+++ ++..+.. ....|.+
T Consensus 171 -------~~~p~~I~AH~s~Iacv~Ln---~~Gt~vATaStkGTLIRIFdt~~g~---------~l~E~RRG~d~A~iy~ 231 (346)
T KOG2111|consen 171 -------PNAPSIINAHDSDIACVALN---LQGTLVATASTKGTLIRIFDTEDGT---------LLQELRRGVDRADIYC 231 (346)
T ss_pred -------cCCceEEEcccCceeEEEEc---CCccEEEEeccCcEEEEEEEcCCCc---------EeeeeecCCchheEEE
Confidence 01235678899999999999 89999999999887 7999999984 4433332 4568999
Q ss_pred EEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 324 LCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 324 ~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
++|+| ++.+|+++|+-|+++||.++
T Consensus 232 iaFSp-~~s~LavsSdKgTlHiF~l~ 256 (346)
T KOG2111|consen 232 IAFSP-NSSWLAVSSDKGTLHIFSLR 256 (346)
T ss_pred EEeCC-CccEEEEEcCCCeEEEEEee
Confidence 99988 88899999999999999863
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.4e-18 Score=135.70 Aligned_cols=195 Identities=13% Similarity=0.185 Sum_probs=161.4
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceE
Q 018858 58 NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL 137 (349)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 137 (349)
......+.++.+|.+++.|+..|.|-.+|..+++....+.. ...|.++.|-.+.++||++ ....++||| ..|..
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v----~Etv~Dv~~LHneq~~AVA-QK~y~yvYD-~~GtE 202 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV----METVRDVTFLHNEQFFAVA-QKKYVYVYD-NNGTE 202 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh----hhhhhhhhhhcchHHHHhh-hhceEEEec-CCCcE
Confidence 44567889999999999999999999999998654433333 3678889998887777765 557899999 45666
Q ss_pred eceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceee
Q 018858 138 YKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI 217 (349)
Q Consensus 138 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 217 (349)
+..++ ....|..+.|.| ..-+|++++..|.++.-|+..+
T Consensus 203 lHClk--~~~~v~rLeFLP------------------------------------yHfLL~~~~~~G~L~Y~DVS~G--- 241 (545)
T KOG1272|consen 203 LHCLK--RHIRVARLEFLP------------------------------------YHFLLVAASEAGFLKYQDVSTG--- 241 (545)
T ss_pred Eeehh--hcCchhhhcccc------------------------------------hhheeeecccCCceEEEeechh---
Confidence 67776 456788899998 5667888899999999999986
Q ss_pred eecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecC
Q 018858 218 SRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS 297 (349)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~ 297 (349)
+++..+....+.+..+.-+ |-+..+-+|...|+|.+|...
T Consensus 242 -------------------------------------klVa~~~t~~G~~~vm~qN---P~NaVih~GhsnGtVSlWSP~ 281 (545)
T KOG1272|consen 242 -------------------------------------KLVASIRTGAGRTDVMKQN---PYNAVIHLGHSNGTVSLWSPN 281 (545)
T ss_pred -------------------------------------hhhHHHHccCCccchhhcC---CccceEEEcCCCceEEecCCC
Confidence 5555666666778888888 777889999999999999999
Q ss_pred CCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 298 RFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
+. .++..+..|.++|.++++.+ +|.|++|+|.|..++|||++
T Consensus 282 sk---------ePLvKiLcH~g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR 323 (545)
T KOG1272|consen 282 SK---------EPLVKILCHRGPVSSIAVDR-GGRYMATTGLDRKVKIWDLR 323 (545)
T ss_pred Cc---------chHHHHHhcCCCcceEEECC-CCcEEeecccccceeEeeec
Confidence 87 66778889999999999988 99999999999999999985
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-15 Score=119.66 Aligned_cols=206 Identities=13% Similarity=0.089 Sum_probs=153.6
Q ss_pred eeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc----EEEEeecCCCCeEEEEEecCCCE-EEEEeCC--CeEE
Q 018858 11 LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD----VQLVTDVGNGPVTSLCFKSGNED-IIYVSSG--KEVK 83 (349)
Q Consensus 11 l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d--g~i~ 83 (349)
.....++|..+... ...|++|-.+|.+.+|..+.+. .+..+..+ .++..+.-++...+ +++|+.. ..+.
T Consensus 101 ~~l~~~~I~gl~~~---dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lk 176 (412)
T KOG3881|consen 101 VSLGTKSIKGLKLA---DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELK 176 (412)
T ss_pred cccccccccchhhc---CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhccccee
Confidence 34455666666554 2478888889999999988443 22333333 45666766665555 5558888 7899
Q ss_pred EEEccCCCcccceeeccCc------ccceEEEEEccC--CCEEEEEcCCCcEEEEEcCC-ceEeceeccccccceeEEEE
Q 018858 84 SFDVHMPASWRPLESYNYN------KEEINQIVCNPK--SSFLACADDGGDVKIIDIRQ-HCLYKSLRAGHSSICSSVQF 154 (349)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~------~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~v~~~~~ 154 (349)
+||++..+.+..-+..+.. .-.++++.|-+. ...||+++.-+.+++||.+. .+++..+. ....+++++..
T Consensus 177 iwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd-~~E~~is~~~l 255 (412)
T KOG3881|consen 177 IWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFD-FLENPISSTGL 255 (412)
T ss_pred eeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEec-cccCcceeeee
Confidence 9999865322221211110 124678889887 78999999999999999994 45677777 67788999999
Q ss_pred ccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeee
Q 018858 155 IPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTS 234 (349)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 234 (349)
.| .++.+++|..-|.+..||++.+.
T Consensus 256 ~p------------------------------------~gn~Iy~gn~~g~l~~FD~r~~k------------------- 280 (412)
T KOG3881|consen 256 TP------------------------------------SGNFIYTGNTKGQLAKFDLRGGK------------------- 280 (412)
T ss_pred cC------------------------------------CCcEEEEecccchhheecccCce-------------------
Confidence 88 89999999999999999999852
Q ss_pred ccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCC
Q 018858 235 KVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 299 (349)
.....+.+-.+.|++|..+ |.+++++++|-|..|||+|+++.
T Consensus 281 --------------------l~g~~~kg~tGsirsih~h---p~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 281 --------------------LLGCGLKGITGSIRSIHCH---PTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred --------------------eeccccCCccCCcceEEEc---CCCceEEeeccceeEEEeecccc
Confidence 2223467778999999999 88999999999999999999995
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.7e-17 Score=132.20 Aligned_cols=185 Identities=17% Similarity=0.242 Sum_probs=142.5
Q ss_pred eeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCC
Q 018858 97 ESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNP 176 (349)
Q Consensus 97 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (349)
..+.+|.+-|.++.|+.+|.+|++|+.|-.+.|||.-..+++..+..+|...|.++.|-|.
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~------------------- 104 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPY------------------- 104 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeecc-------------------
Confidence 4577899999999999999999999999999999999888888887799999999999993
Q ss_pred ceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeee
Q 018858 177 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHL 256 (349)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (349)
.+++++++|..|..|++||+...+.. +........
T Consensus 105 ---------------tnnriv~sgAgDk~i~lfdl~~~~~~------------------------------~~d~~~~~~ 139 (758)
T KOG1310|consen 105 ---------------TNNRIVLSGAGDKLIKLFDLDSSKEG------------------------------GMDHGMEET 139 (758)
T ss_pred ---------------CCCeEEEeccCcceEEEEeccccccc------------------------------ccccCccch
Confidence 15778899999999999999852110 000111234
Q ss_pred eeeecCCCcceEEEEEeeecCCc-cEEEEeeCCCeEEEEecCCCcceeccc-ccceeeeccccccceEEEEeecCCCCcE
Q 018858 257 DYSVGGHTAAASCVAFSMFGERG-KYLISGGNDKLVKVWDCSRFQGVQTSI-NNDLLIKNINLNKKVNWLCTTPTESENL 334 (349)
Q Consensus 257 ~~~~~~h~~~i~~i~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l 334 (349)
...+..|...|..|+.. |++ ..+.++++||+|+-||++......... ....+......--...+++++|.+..+|
T Consensus 140 ~~~~~cht~rVKria~~---p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~l 216 (758)
T KOG1310|consen 140 TRCWSCHTDRVKRIATA---PNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYL 216 (758)
T ss_pred hhhhhhhhhhhhheecC---CCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceE
Confidence 45567799999999998 666 789999999999999998743221111 1111222222334567899999999999
Q ss_pred EEeeCCCeEEEeeC
Q 018858 335 VVCDTSKVVKVYSI 348 (349)
Q Consensus 335 ~~~~~dg~i~iw~~ 348 (349)
++|+.|--.++||.
T Consensus 217 aVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 217 AVGGSDPFARLYDR 230 (758)
T ss_pred EecCCCchhhhhhh
Confidence 99999999999984
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-16 Score=117.36 Aligned_cols=161 Identities=16% Similarity=0.215 Sum_probs=125.4
Q ss_pred CceeeeEEEEecCCCc--eEEEeCCCCcEEEEECCCCcEE----------EEeecCCCCeEEEEEecCCCEEEEEeCCCe
Q 018858 14 HKATATCCIASRDRPG--FVASSGEDGCICWFDLRSKDVQ----------LVTDVGNGPVTSLCFKSGNEDIIYVSSGKE 81 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~--~l~t~~~dg~i~vwd~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 81 (349)
..+.+.|..+.-..+. +++.|.++|.+.+||+.++..+ .....|.++|.++.+.+.-+.=++|+.+..
T Consensus 149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dk 228 (323)
T KOG0322|consen 149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDK 228 (323)
T ss_pred ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccc
Confidence 3456777775443333 3667888999999999987432 233458899999999887666677888888
Q ss_pred EEEEEccCCC-cccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCC
Q 018858 82 VKSFDVHMPA-SWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPW 160 (349)
Q Consensus 82 i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 160 (349)
+..|++.... ....-....-..-.+..+.+-||++.+|+++.|+.|++|..++..++..++ .|...|.+++|+|
T Consensus 229 l~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLk-yHsagvn~vAfsp---- 303 (323)
T KOG0322|consen 229 LVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLK-YHSAGVNAVAFSP---- 303 (323)
T ss_pred ceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhh-hhhcceeEEEeCC----
Confidence 9999887431 111111111113468889999999999999999999999999999999999 9999999999999
Q ss_pred CCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEc
Q 018858 161 EGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINI 211 (349)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 211 (349)
+...+|.++.|++|.+|++
T Consensus 304 --------------------------------d~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 304 --------------------------------DCELMAAASKDARISLWKL 322 (323)
T ss_pred --------------------------------CCchhhhccCCceEEeeec
Confidence 6789999999999999986
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-14 Score=125.05 Aligned_cols=226 Identities=12% Similarity=0.114 Sum_probs=145.3
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCC---CCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEE-EeCC
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGE---DGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIY-VSSG 79 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d 79 (349)
.+...+.+..|...+.+.+|+|+ ++.|+..+. +..|++||+.+++... +....+.....+|+|+|+.|+. .+.+
T Consensus 192 ~g~~~~~lt~~~~~v~~p~wSpD-g~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~ 269 (433)
T PRK04922 192 DGYNPQTILRSAEPILSPAWSPD-GKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRD 269 (433)
T ss_pred CCCCceEeecCCCccccccCCCC-CCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCC
Confidence 45567778888888999999998 777776653 3469999998877533 3333445557899999998764 4555
Q ss_pred C--eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcC-CCc--EEEEEcCCceEeceeccccccceeEEEE
Q 018858 80 K--EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-GGD--VKIIDIRQHCLYKSLRAGHSSICSSVQF 154 (349)
Q Consensus 80 g--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 154 (349)
| .|++||+.+++. . .+..+.......+|+|++++|+..+. +|. |+++|+.+++... +. .........+|
T Consensus 270 g~~~Iy~~d~~~g~~-~---~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt-~~g~~~~~~~~ 343 (433)
T PRK04922 270 GNPEIYVMDLGSRQL-T---RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LT-FQGNYNARASV 343 (433)
T ss_pred CCceEEEEECCCCCe-E---ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-ee-cCCCCccCEEE
Confidence 4 699999987642 2 22223334567899999998887653 444 7777776665432 22 12233456788
Q ss_pred ccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCC---eEEEEEccCceeeeecCCCCCCcccee
Q 018858 155 IPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG---VVDVINIESELNISRSKSTTKPLKGSQ 231 (349)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~ 231 (349)
+| +++.++..+.++ .|.+||+.++..
T Consensus 344 Sp------------------------------------DG~~Ia~~~~~~~~~~I~v~d~~~g~~--------------- 372 (433)
T PRK04922 344 SP------------------------------------DGKKIAMVHGSGGQYRIAVMDLSTGSV--------------- 372 (433)
T ss_pred CC------------------------------------CCCEEEEEECCCCceeEEEEECCCCCe---------------
Confidence 88 788887655332 688999876421
Q ss_pred eeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCC---CeEEEEecCCCcceeccccc
Q 018858 232 STSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND---KLVKVWDCSRFQGVQTSINN 308 (349)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~ 308 (349)
..+. +........|+ |||++++..+.+ ..|+++++...
T Consensus 373 --------------------------~~Lt-~~~~~~~p~~s---pdG~~i~~~s~~~g~~~L~~~~~~g~--------- 413 (433)
T PRK04922 373 --------------------------RTLT-PGSLDESPSFA---PNGSMVLYATREGGRGVLAAVSTDGR--------- 413 (433)
T ss_pred --------------------------EECC-CCCCCCCceEC---CCCCEEEEEEecCCceEEEEEECCCC---------
Confidence 1121 11123346788 899988776643 46888888653
Q ss_pred ceeeeccccccceEEEEeec
Q 018858 309 DLLIKNINLNKKVNWLCTTP 328 (349)
Q Consensus 309 ~~~~~~~~~~~~v~~~~~~~ 328 (349)
....+..+.+.+...+|+|
T Consensus 414 -~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 414 -VRQRLVSADGEVREPAWSP 432 (433)
T ss_pred -ceEEcccCCCCCCCCccCC
Confidence 2333334455666667765
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.2e-15 Score=120.39 Aligned_cols=252 Identities=14% Similarity=0.169 Sum_probs=170.0
Q ss_pred CCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEE
Q 018858 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFD 86 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 86 (349)
+++.|. |...-+.|..+||+...++||..--.|++||+....+...-......|.-.-++.|-..++.--.|..|.+..
T Consensus 44 LiQdfe-~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHa 122 (703)
T KOG2321|consen 44 LIQDFE-MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHA 122 (703)
T ss_pred HHHhcC-CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehh
Confidence 344443 7778889999999444467888889999999987654322222234455555565555566666677776543
Q ss_pred ccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCC
Q 018858 87 VHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPEN 166 (349)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 166 (349)
-- | ....+. + ...-..++++.-..-|++++....|+-++++.|.-+..+. ...+.++++..++
T Consensus 123 k~-G-~hy~~R-I---P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~-~~~~~lN~v~in~---------- 185 (703)
T KOG2321|consen 123 KY-G-RHYRTR-I---PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFE-TDSGELNVVSINE---------- 185 (703)
T ss_pred hc-C-eeeeee-c---CcCCccccccCCCccEEEeecCcceEEEEccccccccccc-cccccceeeeecC----------
Confidence 21 1 011111 1 1233456665434334444455679999999999999888 6678899999988
Q ss_pred CCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeee
Q 018858 167 NGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEIL 246 (349)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (349)
...+|++|+.+|.|.+||.+....+..+.
T Consensus 186 --------------------------~hgLla~Gt~~g~VEfwDpR~ksrv~~l~------------------------- 214 (703)
T KOG2321|consen 186 --------------------------EHGLLACGTEDGVVEFWDPRDKSRVGTLD------------------------- 214 (703)
T ss_pred --------------------------ccceEEecccCceEEEecchhhhhheeee-------------------------
Confidence 67889999999999999999753222211
Q ss_pred eecCceeeeeeeeecCCC-----cceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccce
Q 018858 247 DQSGGKRLHLDYSVGGHT-----AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKV 321 (349)
Q Consensus 247 ~~~~~~~~~~~~~~~~h~-----~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v 321 (349)
....+..|. ..|+++.|+ .+|-.+++|..+|.+.|||++..+ +++..-.+..-+|
T Consensus 215 ---------~~~~v~s~pg~~~~~svTal~F~---d~gL~~aVGts~G~v~iyDLRa~~--------pl~~kdh~~e~pi 274 (703)
T KOG2321|consen 215 ---------AASSVNSHPGGDAAPSVTALKFR---DDGLHVAVGTSTGSVLIYDLRASK--------PLLVKDHGYELPI 274 (703)
T ss_pred ---------cccccCCCccccccCcceEEEec---CCceeEEeeccCCcEEEEEcccCC--------ceeecccCCccce
Confidence 111222232 359999999 779999999999999999999974 4555555566689
Q ss_pred EEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 322 NWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 322 ~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
..+.|.+.+.+--+...+...++|||
T Consensus 275 ~~l~~~~~~~q~~v~S~Dk~~~kiWd 300 (703)
T KOG2321|consen 275 KKLDWQDTDQQNKVVSMDKRILKIWD 300 (703)
T ss_pred eeecccccCCCceEEecchHHhhhcc
Confidence 99999876554445555667899997
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.3e-14 Score=122.61 Aligned_cols=167 Identities=12% Similarity=0.093 Sum_probs=108.6
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCC---CCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEE-EeCC
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGE---DGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIY-VSSG 79 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d 79 (349)
.+...+.+..+...+.+.+|+|+ ++.|+..+. ...|++||+.+++... +....+.+...+|+|+|+.|+. .+.+
T Consensus 184 dG~~~~~l~~~~~~v~~p~wSPD-G~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~ 261 (427)
T PRK02889 184 DGQNAQSALSSPEPIISPAWSPD-GTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRD 261 (427)
T ss_pred CCCCceEeccCCCCcccceEcCC-CCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccC
Confidence 45556777778889999999998 777765543 2459999999887543 3333455668899999998875 5667
Q ss_pred CeEEEEEc--cCCCcccceeeccCcccceEEEEEccCCCEEEEEcC-CCcEEEEEc--CCceEeceeccccccceeEEEE
Q 018858 80 KEVKSFDV--HMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-GGDVKIIDI--RQHCLYKSLRAGHSSICSSVQF 154 (349)
Q Consensus 80 g~i~iwd~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~--~~~~~~~~~~~~~~~~v~~~~~ 154 (349)
|...+|.+ ..+. ...+..+........|+|||+.|+..+. +|...+|.+ .+++.. .+. .........+|
T Consensus 262 g~~~Iy~~d~~~~~----~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt-~~g~~~~~~~~ 335 (427)
T PRK02889 262 GNSQIYTVNADGSG----LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVT-FTGSYNTSPRI 335 (427)
T ss_pred CCceEEEEECCCCC----cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEe-cCCCCcCceEE
Confidence 77666654 3332 2222223344567889999998876554 455555544 444332 222 12223345678
Q ss_pred ccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCC---eEEEEEccCc
Q 018858 155 IPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG---VVDVINIESE 214 (349)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~ 214 (349)
+| +|++++..+.++ .|.+||+.++
T Consensus 336 Sp------------------------------------DG~~Ia~~s~~~g~~~I~v~d~~~g 362 (427)
T PRK02889 336 SP------------------------------------DGKLLAYISRVGGAFKLYVQDLATG 362 (427)
T ss_pred CC------------------------------------CCCEEEEEEccCCcEEEEEEECCCC
Confidence 88 788887766544 6899998864
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.9e-14 Score=118.55 Aligned_cols=212 Identities=14% Similarity=0.151 Sum_probs=136.9
Q ss_pred CcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeC---CCeEEEEEccCCCcccceeeccCcccceEEEEEccC
Q 018858 38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS---GKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK 114 (349)
Q Consensus 38 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 114 (349)
..|.+||.+.... ..+..+...+...+|+|+|+.|+..+. +..|.+|++.+++. +.+..+. .....++|+||
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~-~~l~~~~---~~~~~~~~SPD 253 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFP---RHNGAPAFSPD 253 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe-EEccCCC---CCcCCeEECCC
Confidence 4789999875544 334446678999999999999987653 35799999987642 3333333 33456899999
Q ss_pred CCEEEEE-cCCC--cEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccC
Q 018858 115 SSFLACA-DDGG--DVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLD 191 (349)
Q Consensus 115 ~~~l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (349)
|+.|+.. +.+| .|++||+.+++...... +...+....|+|
T Consensus 254 G~~La~~~~~~g~~~I~~~d~~tg~~~~lt~--~~~~~~~~~wSP----------------------------------- 296 (429)
T PRK03629 254 GSKLAFALSKTGSLNLYVMDLASGQIRQVTD--GRSNNTEPTWFP----------------------------------- 296 (429)
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCCEEEccC--CCCCcCceEECC-----------------------------------
Confidence 9988754 4444 49999998876544333 445677889999
Q ss_pred CCCcEEEEEcC-CCeEEEE--EccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceE
Q 018858 192 KTNKICVVAKG-DGVVDVI--NIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAAS 268 (349)
Q Consensus 192 ~~~~~l~~~~~-dg~i~i~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 268 (349)
+++.|+..+. ++...+| |+.++. ...+..+.....
T Consensus 297 -DG~~I~f~s~~~g~~~Iy~~d~~~g~-----------------------------------------~~~lt~~~~~~~ 334 (429)
T PRK03629 297 -DSQNLAYTSDQAGRPQVYKVNINGGA-----------------------------------------PQRITWEGSQNQ 334 (429)
T ss_pred -CCCEEEEEeCCCCCceEEEEECCCCC-----------------------------------------eEEeecCCCCcc
Confidence 7887766654 3444455 554321 111222223345
Q ss_pred EEEEeeecCCccEEEEeeCC---CeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCe---
Q 018858 269 CVAFSMFGERGKYLISGGND---KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKV--- 342 (349)
Q Consensus 269 ~i~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--- 342 (349)
...|+ |||++|+..+.+ ..|++||+.+++. ..+ ...+ ......|+| ||+.|+.++.++.
T Consensus 335 ~~~~S---pDG~~Ia~~~~~~g~~~I~~~dl~~g~~-------~~L--t~~~--~~~~p~~Sp-DG~~i~~~s~~~~~~~ 399 (429)
T PRK03629 335 DADVS---SDGKFMVMVSSNGGQQHIAKQDLATGGV-------QVL--TDTF--LDETPSIAP-NGTMVIYSSSQGMGSV 399 (429)
T ss_pred CEEEC---CCCCEEEEEEccCCCceEEEEECCCCCe-------EEe--CCCC--CCCCceECC-CCCEEEEEEcCCCceE
Confidence 67888 899988776543 4588999987632 111 1111 223567877 8888888887754
Q ss_pred EEEeeC
Q 018858 343 VKVYSI 348 (349)
Q Consensus 343 i~iw~~ 348 (349)
+.++++
T Consensus 400 l~~~~~ 405 (429)
T PRK03629 400 LNLVST 405 (429)
T ss_pred EEEEEC
Confidence 566654
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.7e-14 Score=121.24 Aligned_cols=145 Identities=12% Similarity=0.113 Sum_probs=101.3
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeC---CCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEE-EeCC
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSG---EDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIY-VSSG 79 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~---~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d 79 (349)
.+...+.+..|...+.+.+|+|+ ++.|+..+ .+..|++||+.+++.. .+..+.+.+...+|+|+|+.|+. .+.+
T Consensus 190 dg~~~~~lt~~~~~v~~p~wSpD-G~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~ 267 (435)
T PRK05137 190 DGANVRYLTDGSSLVLTPRFSPN-RQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQG 267 (435)
T ss_pred CCCCcEEEecCCCCeEeeEECCC-CCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecC
Confidence 35567788888899999999998 77776654 2468999999887753 34445667788999999998764 4555
Q ss_pred C--eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcC-CC--cEEEEEcCCceEeceeccccccceeEEEE
Q 018858 80 K--EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-GG--DVKIIDIRQHCLYKSLRAGHSSICSSVQF 154 (349)
Q Consensus 80 g--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 154 (349)
+ .|.+||+.+++. . .+..+........|+|+++.|+..+. +| .|+++|+..++.. .+. .....+....|
T Consensus 268 g~~~Iy~~d~~~~~~-~---~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt-~~~~~~~~~~~ 341 (435)
T PRK05137 268 GNTDIYTMDLRSGTT-T---RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RIS-FGGGRYSTPVW 341 (435)
T ss_pred CCceEEEEECCCCce-E---EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-Eee-cCCCcccCeEE
Confidence 5 477778876542 2 22223345667899999998887663 33 5888888766543 333 23445666788
Q ss_pred cc
Q 018858 155 IP 156 (349)
Q Consensus 155 ~~ 156 (349)
+|
T Consensus 342 Sp 343 (435)
T PRK05137 342 SP 343 (435)
T ss_pred CC
Confidence 88
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-13 Score=119.20 Aligned_cols=212 Identities=14% Similarity=0.122 Sum_probs=138.5
Q ss_pred CcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeC---CCeEEEEEccCCCcccceeeccCcccceEEEEEccC
Q 018858 38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS---GKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK 114 (349)
Q Consensus 38 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 114 (349)
..|.++|.+... ...+..+...+...+|+|+|+.|+..+. +..|.+||+.+++. ..+.. +...+...+|+|+
T Consensus 182 ~~l~~~d~dg~~-~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~---~~g~~~~~~~SPD 256 (435)
T PRK05137 182 KRLAIMDQDGAN-VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGN---FPGMTFAPRFSPD 256 (435)
T ss_pred eEEEEECCCCCC-cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeec---CCCcccCcEECCC
Confidence 478899986444 4556668889999999999999988764 46899999987643 23332 3356678899999
Q ss_pred CCEEE-EEcCCCc--EEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccC
Q 018858 115 SSFLA-CADDGGD--VKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLD 191 (349)
Q Consensus 115 ~~~l~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (349)
|+.|+ +.+.++. |++||+.+++.. .+. .+........|+|
T Consensus 257 G~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt-~~~~~~~~~~~sp----------------------------------- 299 (435)
T PRK05137 257 GRKVVMSLSQGGNTDIYTMDLRSGTTT-RLT-DSPAIDTSPSYSP----------------------------------- 299 (435)
T ss_pred CCEEEEEEecCCCceEEEEECCCCceE-Ecc-CCCCccCceeEcC-----------------------------------
Confidence 98775 4455554 888898877653 344 3455566788888
Q ss_pred CCCcEEEEEc-CCC--eEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceE
Q 018858 192 KTNKICVVAK-GDG--VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAAS 268 (349)
Q Consensus 192 ~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 268 (349)
+++.++..+ .+| .|.++|+..+. ...+..+...+.
T Consensus 300 -DG~~i~f~s~~~g~~~Iy~~d~~g~~-----------------------------------------~~~lt~~~~~~~ 337 (435)
T PRK05137 300 -DGSQIVFESDRSGSPQLYVMNADGSN-----------------------------------------PRRISFGGGRYS 337 (435)
T ss_pred -CCCEEEEEECCCCCCeEEEEECCCCC-----------------------------------------eEEeecCCCccc
Confidence 788777655 333 57777776531 112222234456
Q ss_pred EEEEeeecCCccEEEEeeCC---CeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCC-----
Q 018858 269 CVAFSMFGERGKYLISGGND---KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS----- 340 (349)
Q Consensus 269 ~i~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----- 340 (349)
...|+ |+|++|+..+.+ ..|.+||+..+.. .. +. ....+....|+| ||+.|+..+.+
T Consensus 338 ~~~~S---pdG~~ia~~~~~~~~~~i~~~d~~~~~~-------~~---lt-~~~~~~~p~~sp-DG~~i~~~~~~~~~~~ 402 (435)
T PRK05137 338 TPVWS---PRGDLIAFTKQGGGQFSIGVMKPDGSGE-------RI---LT-SGFLVEGPTWAP-NGRVIMFFRQTPGSGG 402 (435)
T ss_pred CeEEC---CCCCEEEEEEcCCCceEEEEEECCCCce-------Ee---cc-CCCCCCCCeECC-CCCEEEEEEccCCCCC
Confidence 67888 899988876543 3688888765421 11 11 122456778888 78777665432
Q ss_pred -CeEEEeeC
Q 018858 341 -KVVKVYSI 348 (349)
Q Consensus 341 -g~i~iw~~ 348 (349)
..+++.++
T Consensus 403 ~~~L~~~dl 411 (435)
T PRK05137 403 APKLYTVDL 411 (435)
T ss_pred cceEEEEEC
Confidence 24666654
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-13 Score=107.39 Aligned_cols=146 Identities=14% Similarity=0.113 Sum_probs=106.2
Q ss_pred CCCeeeeC-CceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC----cE----------EEEeecCCCCeEEEEEecCC
Q 018858 6 AKPRRLRG-HKATATCCIASRDRPGFVASSGEDGCICWFDLRSK----DV----------QLVTDVGNGPVTSLCFKSGN 70 (349)
Q Consensus 6 ~~~~~l~~-h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~----~~----------~~~~~~~~~~v~~~~~~~~~ 70 (349)
.....|+. .+..|+|++|-|..+..|+.|+. +-|.+|..... +. +..-++| .+|++++|.+||
T Consensus 130 t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dg 207 (445)
T KOG2139|consen 130 TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDG 207 (445)
T ss_pred CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCC
Confidence 44555553 35679999999987788888886 45999986521 11 1122334 689999999999
Q ss_pred CEEEEEeC-CCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCC-ceEeceeccccccc
Q 018858 71 EDIIYVSS-GKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ-HCLYKSLRAGHSSI 148 (349)
Q Consensus 71 ~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~ 148 (349)
..+++++. |..|.|||..++...... . ...+.++-+.|+||+.+|+++.-|+..++|+... ....+- . ...+.
T Consensus 208 t~l~tAS~gsssi~iWdpdtg~~~pL~-~--~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw-~-lgsgr 282 (445)
T KOG2139|consen 208 TILVTASFGSSSIMIWDPDTGQKIPLI-P--KGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERW-I-LGSGR 282 (445)
T ss_pred CEEeecccCcceEEEEcCCCCCccccc-c--cCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecce-e-ccCCc
Confidence 99999986 578999999987654433 1 1246788999999999999999999999996543 333222 2 23458
Q ss_pred eeEEEEccCC
Q 018858 149 CSSVQFIPWK 158 (349)
Q Consensus 149 v~~~~~~~~~ 158 (349)
|...+|+|.|
T Consensus 283 vqtacWspcG 292 (445)
T KOG2139|consen 283 VQTACWSPCG 292 (445)
T ss_pred eeeeeecCCC
Confidence 9999999953
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.3e-13 Score=102.64 Aligned_cols=178 Identities=15% Similarity=0.222 Sum_probs=130.0
Q ss_pred CcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccC-CCcccceeeccCcccceEEEEEccCCC
Q 018858 38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM-PASWRPLESYNYNKEEINQIVCNPKSS 116 (349)
Q Consensus 38 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~ 116 (349)
..+.|||-...+++.++. ...+|.++.+.++ .|++.- .+.|+||.+.+ .+....+.+.... ..+.+++-+.+..
T Consensus 75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NP-kGlC~~~~~~~k~ 149 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNP-KGLCSLCPTSNKS 149 (346)
T ss_pred ceEEEEecccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCC-CceEeecCCCCce
Confidence 469999977777777776 5688999999854 566655 67799999884 3444444443322 3333333333334
Q ss_pred EEEE-EcCCCcEEEEEcCCceE--eceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCC
Q 018858 117 FLAC-ADDGGDVKIIDIRQHCL--YKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT 193 (349)
Q Consensus 117 ~l~~-~~~dg~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (349)
+||. |-.-|.|.|-|+...+. ...+. .|.+.|.|++.+. +
T Consensus 150 ~LafPg~k~GqvQi~dL~~~~~~~p~~I~-AH~s~Iacv~Ln~------------------------------------~ 192 (346)
T KOG2111|consen 150 LLAFPGFKTGQVQIVDLASTKPNAPSIIN-AHDSDIACVALNL------------------------------------Q 192 (346)
T ss_pred EEEcCCCccceEEEEEhhhcCcCCceEEE-cccCceeEEEEcC------------------------------------C
Confidence 5554 44578999999986554 35566 8999999999998 7
Q ss_pred CcEEEEEcCCCe-EEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecC--CCcceEEE
Q 018858 194 NKICVVAKGDGV-VDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGG--HTAAASCV 270 (349)
Q Consensus 194 ~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~i~~i 270 (349)
|..+|+++..|+ |||||..++. ++.+++. ....|+++
T Consensus 193 Gt~vATaStkGTLIRIFdt~~g~----------------------------------------~l~E~RRG~d~A~iy~i 232 (346)
T KOG2111|consen 193 GTLVATASTKGTLIRIFDTEDGT----------------------------------------LLQELRRGVDRADIYCI 232 (346)
T ss_pred ccEEEEeccCcEEEEEEEcCCCc----------------------------------------EeeeeecCCchheEEEE
Confidence 999999999986 6899999863 3333331 24579999
Q ss_pred EEeeecCCccEEEEeeCCCeEEEEecCCCc
Q 018858 271 AFSMFGERGKYLISGGNDKLVKVWDCSRFQ 300 (349)
Q Consensus 271 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 300 (349)
+|+ |+..+|+++|.-|+|.||.++...
T Consensus 233 aFS---p~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 233 AFS---PNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred EeC---CCccEEEEEcCCCeEEEEEeecCC
Confidence 999 899999999999999999987643
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.1e-15 Score=112.80 Aligned_cols=255 Identities=16% Similarity=0.220 Sum_probs=187.8
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECC-CCcEEEEee-cCCCCeEEEEEecCCCEEEEEeCCCe
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLR-SKDVQLVTD-VGNGPVTSLCFKSGNEDIIYVSSGKE 81 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~ 81 (349)
....++.++||.+.|++...-|. ..-+++.+.|.+++||--. .++.-..+. ....+++++.+.++...|+.+-..|+
T Consensus 13 kp~ll~~~eG~~d~vn~~~l~~~-e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngt 91 (404)
T KOG1409|consen 13 KPELLSKIEGSQDDVNAAILIPK-EEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGT 91 (404)
T ss_pred chhhhhhhcCchhhhhhheeccC-CCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecce
Confidence 34567889999999999888887 6789999999999999543 344322222 24578999999999999999999999
Q ss_pred EEEEEccCC-CcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCC
Q 018858 82 VKSFDVHMP-ASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPW 160 (349)
Q Consensus 82 i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 160 (349)
+.-+.+... .....++.+..|...+..+-|+....++++.+.|..+.---.+.+..+..+. .....+++.+.-
T Consensus 92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~--~~~~~t~~~~d~---- 165 (404)
T KOG1409|consen 92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN--FETPASALQFDA---- 165 (404)
T ss_pred EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceE--eeccCCCCceee----
Confidence 998877531 1123344556788899999999888899999998877544444544433222 111122222211
Q ss_pred CCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEE
Q 018858 161 EGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRD 240 (349)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (349)
.+..+|...|.|..-.+..
T Consensus 166 ----------------------------------~~~fvGd~~gqvt~lr~~~--------------------------- 184 (404)
T KOG1409|consen 166 ----------------------------------LYAFVGDHSGQITMLKLEQ--------------------------- 184 (404)
T ss_pred ----------------------------------EEEEecccccceEEEEEee---------------------------
Confidence 1455666667666655542
Q ss_pred EEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccc
Q 018858 241 AEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKK 320 (349)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (349)
....++.++.+|.+.+.++.|. +..+.|.+|..|..+.+||+...+ .......+|...
T Consensus 185 -----------~~~~~i~~~~~h~~~~~~l~Wd---~~~~~LfSg~~d~~vi~wdigg~~--------g~~~el~gh~~k 242 (404)
T KOG1409|consen 185 -----------NGCQLITTFNGHTGEVTCLKWD---PGQRLLFSGASDHSVIMWDIGGRK--------GTAYELQGHNDK 242 (404)
T ss_pred -----------cCCceEEEEcCcccceEEEEEc---CCCcEEEeccccCceEEEeccCCc--------ceeeeeccchhh
Confidence 1236778899999999999999 888999999999999999998764 455677889999
Q ss_pred eEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 321 VNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 321 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
|..+...+ .-+.|++++.||.|.+|++.
T Consensus 243 V~~l~~~~-~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 243 VQALSYAQ-HTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred hhhhhhhh-hheeeeeccCCCeEEEEecc
Confidence 99988766 45679999999999999974
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.9e-14 Score=128.05 Aligned_cols=222 Identities=12% Similarity=0.131 Sum_probs=152.8
Q ss_pred EECCCCcEEEEeecCCCCeEEEEEecCC-CEEEEEeCCCeEEEEEccCCC----cccceeeccCcccceEEEEEccCCCE
Q 018858 43 FDLRSKDVQLVTDVGNGPVTSLCFKSGN-EDIIYVSSGKEVKSFDVHMPA----SWRPLESYNYNKEEINQIVCNPKSSF 117 (349)
Q Consensus 43 wd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~ 117 (349)
|+. .|..+..+..|...+..++.++.. .++++||.||+|++|+.+... ..+...++......+.++...+.++.
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 554 367788888899999999887755 999999999999999987521 11222233323567899999999999
Q ss_pred EEEEcCCCcEEEEEcCCceE-------eceeccccccceeE-EEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccc
Q 018858 118 LACADDGGDVKIIDIRQHCL-------YKSLRAGHSSICSS-VQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADM 189 (349)
Q Consensus 118 l~~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (349)
+|+++.||.|++.++...+. .+.......+.+.. -+|...
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~-------------------------------- 1160 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAI-------------------------------- 1160 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeeccccc--------------------------------
Confidence 99999999999999875211 11111011122222 222221
Q ss_pred cCCCCc-EEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceE
Q 018858 190 LDKTNK-ICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAAS 268 (349)
Q Consensus 190 ~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 268 (349)
.+. .++.+..-+.|..||++.... ..........+.|+
T Consensus 1161 ---~~S~~lvy~T~~~~iv~~D~r~~~~--------------------------------------~w~lk~~~~hG~vT 1199 (1431)
T KOG1240|consen 1161 ---VQSHVLVYATDLSRIVSWDTRMRHD--------------------------------------AWRLKNQLRHGLVT 1199 (1431)
T ss_pred ---ccceeEEEEEeccceEEecchhhhh--------------------------------------HHhhhcCcccccee
Confidence 233 778888889999999997311 01112222357899
Q ss_pred EEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCC--CcEEEee--CCCeEE
Q 018858 269 CVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTES--ENLVVCD--TSKVVK 344 (349)
Q Consensus 269 ~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~--~dg~i~ 344 (349)
+++.+ |.+++++.|...|.+-+||++-+. .+.....++..+++.++.+|..+ ...++++ ..+.|-
T Consensus 1200 Si~id---p~~~WlviGts~G~l~lWDLRF~~--------~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs 1268 (1431)
T KOG1240|consen 1200 SIVID---PWCNWLVIGTSRGQLVLWDLRFRV--------PILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVS 1268 (1431)
T ss_pred EEEec---CCceEEEEecCCceEEEEEeecCc--------eeecccCcccCCcceEEeeccCCCCceEEEecccCCCcee
Confidence 99999 889999999999999999999863 33344455667888887776443 4555554 568899
Q ss_pred EeeCC
Q 018858 345 VYSIS 349 (349)
Q Consensus 345 iw~~~ 349 (349)
+|++.
T Consensus 1269 ~wn~~ 1273 (1431)
T KOG1240|consen 1269 TWNME 1273 (1431)
T ss_pred eeecc
Confidence 99874
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.1e-13 Score=112.18 Aligned_cols=269 Identities=16% Similarity=0.158 Sum_probs=154.8
Q ss_pred ceE-EEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceE
Q 018858 29 GFV-ASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEIN 107 (349)
Q Consensus 29 ~~l-~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~ 107 (349)
+++ ++-..++.|.+.|..+.+.+..+......-..+.++|+|+++++++.||.|.++|+.+.+....+.. .....
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~----G~~~~ 81 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV----GGNPR 81 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-----SSEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec----CCCcc
Confidence 444 4566789999999999999999986554445578999999999999999999999998765444443 24578
Q ss_pred EEEEccCCCEEEEEc-CCCcEEEEEcCCceEeceeccc------cccceeEEEEccCCCCCCCCCCCCCCccccCCceeE
Q 018858 108 QIVCNPKSSFLACAD-DGGDVKIIDIRQHCLYKSLRAG------HSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVH 180 (349)
Q Consensus 108 ~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (349)
.++++++|+++++++ ..+.+.++|.++.++++.+... ....+.++..+|
T Consensus 82 ~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~------------------------ 137 (369)
T PF02239_consen 82 GIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASP------------------------ 137 (369)
T ss_dssp EEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-S------------------------
T ss_pred eEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecC------------------------
Confidence 899999999998776 5889999999999988877611 123456666666
Q ss_pred EeecCcccccCCCCcEEEEE-cCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeee-------eeecCce
Q 018858 181 AIAIPDADMLDKTNKICVVA-KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI-------LDQSGGK 252 (349)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 252 (349)
....+++. -..+.|.+.|......+...............|+|+++++++... .|.....
T Consensus 138 ------------~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k 205 (369)
T PF02239_consen 138 ------------GRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGK 205 (369)
T ss_dssp ------------SSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTE
T ss_pred ------------CCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccce
Confidence 45545544 455888888877654333323333445567899999998875322 1211111
Q ss_pred eeeeeee-ecCCCcceEEEE-------EeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEE
Q 018858 253 RLHLDYS-VGGHTAAASCVA-------FSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWL 324 (349)
Q Consensus 253 ~~~~~~~-~~~h~~~i~~i~-------~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 324 (349)
....+.. -..|..+...+- |... ..+.+.++.-....+.+||..+. +.+......... ..+
T Consensus 206 ~v~~i~~g~~p~~~~~~~~php~~g~vw~~~-~~~~~~~~~ig~~~v~v~d~~~w---------kvv~~I~~~G~g-lFi 274 (369)
T PF02239_consen 206 LVALIDTGKKPHPGPGANFPHPGFGPVWATS-GLGYFAIPLIGTDPVSVHDDYAW---------KVVKTIPTQGGG-LFI 274 (369)
T ss_dssp EEEEEE-SSSBEETTEEEEEETTTEEEEEEE-BSSSSEEEEEE--TTT-STTTBT---------SEEEEEE-SSSS---E
T ss_pred EEEEeeccccccccccccccCCCcceEEeec-cccceecccccCCccccchhhcC---------eEEEEEECCCCc-cee
Confidence 1111111 112333333321 1100 12223322222335567777776 455555555555 667
Q ss_pred EeecCCCCcEEEe----eCCCeEEEeeCC
Q 018858 325 CTTPTESENLVVC----DTSKVVKVYSIS 349 (349)
Q Consensus 325 ~~~~~~~~~l~~~----~~dg~i~iw~~~ 349 (349)
..+| +++++.+. ...+.|.++|..
T Consensus 275 ~thP-~s~~vwvd~~~~~~~~~v~viD~~ 302 (369)
T PF02239_consen 275 KTHP-DSRYVWVDTFLNPDADTVQVIDKK 302 (369)
T ss_dssp E--T-T-SEEEEE-TT-SSHT-EEEEECC
T ss_pred ecCC-CCccEEeeccCCCCCceEEEEECc
Confidence 7778 78888888 355889998863
|
... |
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.3e-15 Score=114.62 Aligned_cols=218 Identities=15% Similarity=0.106 Sum_probs=152.4
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEE-cCCCcEEEEEcCCceEecee
Q 018858 63 SLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACA-DDGGDVKIIDIRQHCLYKSL 141 (349)
Q Consensus 63 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~ 141 (349)
-..|+|+|+++|+++.- .+.|-|.++-+..+....+ +.|..+.|..+..+++++ ..++.|.+|++...+-...+
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cl----dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckI 87 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCL----DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKI 87 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHH----HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEe
Confidence 35799999999999966 6778887765433333222 567889999888776655 56779999999998887788
Q ss_pred ccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCc-EEEEEcCCCeEEEEEccCceeeeec
Q 018858 142 RAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK-ICVVAKGDGVVDVINIESELNISRS 220 (349)
Q Consensus 142 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~ 220 (349)
. ....++.+++|+| +|+ +|.+...+-+|.+|.+.+.......
T Consensus 88 d-eg~agls~~~WSP------------------------------------dgrhiL~tseF~lriTVWSL~t~~~~~~~ 130 (447)
T KOG4497|consen 88 D-EGQAGLSSISWSP------------------------------------DGRHILLTSEFDLRITVWSLNTQKGYLLP 130 (447)
T ss_pred c-cCCCcceeeeECC------------------------------------CcceEeeeecceeEEEEEEeccceeEEec
Confidence 7 6778899999999 674 5566778999999999975443332
Q ss_pred CCCCCCccceeeeeccccEEEEeeeeeecCce------eeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEE
Q 018858 221 KSTTKPLKGSQSTSKVNIRDAEMEILDQSGGK------RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 294 (349)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vw 294 (349)
. .+..+..++|+|||++.+.....|..... .+.+++.+.-..-..+.+.|+ |||+.|+ ||
T Consensus 131 ~--pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWs---Pdg~~la---------Vw 196 (447)
T KOG4497|consen 131 H--PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWS---PDGNWLA---------VW 196 (447)
T ss_pred c--cccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceEC---CCCcEEE---------Ee
Confidence 2 23344889999999998865555543222 223344444445567899999 8988776 45
Q ss_pred ecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 295 DCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 295 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
|.--.. ++. .-.-.-.+..++|+| .+++|+.|+.|++++|-+
T Consensus 197 d~~Ley--------kv~--aYe~~lG~k~v~wsP-~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 197 DNVLEY--------KVY--AYERGLGLKFVEWSP-CNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred cchhhh--------eee--eeeeccceeEEEecc-ccceEEeeccchhhhhhc
Confidence 432210 110 011123567889988 778999999999998743
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.3e-14 Score=105.12 Aligned_cols=149 Identities=17% Similarity=0.265 Sum_probs=106.9
Q ss_pred EEEEecCCCceEEE-eC---------CCCcEEEEECCC-CcEEEEeec-CCCCeEEEEEecCCCEEEEEe--CCCeEEEE
Q 018858 20 CCIASRDRPGFVAS-SG---------EDGCICWFDLRS-KDVQLVTDV-GNGPVTSLCFKSGNEDIIYVS--SGKEVKSF 85 (349)
Q Consensus 20 ~~~~~~~~~~~l~t-~~---------~dg~i~vwd~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~--~dg~i~iw 85 (349)
.+.|+|+ |++|+. .. .-|...+|.++. ......+.. ..++|.+++|+|+++.+++.. .++.|.+|
T Consensus 10 ~~~W~~~-G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 10 KLHWQPS-GDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEeccc-CCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 4678998 665553 22 123455565532 233444433 345799999999999976653 56799999
Q ss_pred EccCCCcccceeeccCcccceEEEEEccCCCEEEEEcC---CCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCC
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD---GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEG 162 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 162 (349)
|++ . ..+..+. ...+..+.|+|+|+++++++. .|.|.+||+++.+.+.... |. .+..++|+|
T Consensus 89 d~~-~---~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~~-~~t~~~WsP------ 153 (194)
T PF08662_consen 89 DVK-G---KKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--HS-DATDVEWSP------ 153 (194)
T ss_pred cCc-c---cEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc--cC-cEEEEEEcC------
Confidence 997 2 3334443 456788999999999998864 4679999999888887766 33 478999999
Q ss_pred CCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcC------CCeEEEEEccCc
Q 018858 163 LPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG------DGVVDVINIESE 214 (349)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~ 214 (349)
+|++|+++.. |..++||+....
T Consensus 154 ------------------------------dGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 154 ------------------------------DGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred ------------------------------CCCEEEEEEeccceeccccEEEEEecCe
Confidence 8999998864 678999998753
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.1e-13 Score=117.03 Aligned_cols=212 Identities=14% Similarity=0.100 Sum_probs=135.1
Q ss_pred CcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCC---CeEEEEEccCCCcccceeeccCcccceEEEEEccC
Q 018858 38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG---KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK 114 (349)
Q Consensus 38 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 114 (349)
..|.+||..... ...+..+...+...+|+|+|+.|+..+.+ ..|.+||+.+++. ..+... .......+|+|+
T Consensus 184 ~~l~i~D~~g~~-~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~-~~l~~~---~g~~~~~~~SpD 258 (433)
T PRK04922 184 YALQVADSDGYN-PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR-ELVASF---RGINGAPSFSPD 258 (433)
T ss_pred EEEEEECCCCCC-ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE-EEeccC---CCCccCceECCC
Confidence 468999986444 34555677789999999999999988743 4799999987643 223322 234557899999
Q ss_pred CCEEE-EEcCCC--cEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccC
Q 018858 115 SSFLA-CADDGG--DVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLD 191 (349)
Q Consensus 115 ~~~l~-~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (349)
++.++ +.+.+| .|++||+.+++.. .+. .+.......+|+|
T Consensus 259 G~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt-~~~~~~~~~~~sp----------------------------------- 301 (433)
T PRK04922 259 GRRLALTLSRDGNPEIYVMDLGSRQLT-RLT-NHFGIDTEPTWAP----------------------------------- 301 (433)
T ss_pred CCEEEEEEeCCCCceEEEEECCCCCeE-ECc-cCCCCccceEECC-----------------------------------
Confidence 98776 444555 5999999887653 344 3444456788988
Q ss_pred CCCcEEEEEc-CCCe--EEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceE
Q 018858 192 KTNKICVVAK-GDGV--VDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAAS 268 (349)
Q Consensus 192 ~~~~~l~~~~-~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 268 (349)
+++.|+..+ .+|. |.++++.+++ ...+..+.....
T Consensus 302 -DG~~l~f~sd~~g~~~iy~~dl~~g~-----------------------------------------~~~lt~~g~~~~ 339 (433)
T PRK04922 302 -DGKSIYFTSDRGGRPQIYRVAASGGS-----------------------------------------AERLTFQGNYNA 339 (433)
T ss_pred -CCCEEEEEECCCCCceEEEEECCCCC-----------------------------------------eEEeecCCCCcc
Confidence 788777655 4444 5555655421 011111122334
Q ss_pred EEEEeeecCCccEEEEeeCC---CeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCC---Ce
Q 018858 269 CVAFSMFGERGKYLISGGND---KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS---KV 342 (349)
Q Consensus 269 ~i~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~ 342 (349)
...|+ |+|++++..+.+ ..|++||+.+++ .. .+. +........|+| +|++|+..+.+ +.
T Consensus 340 ~~~~S---pDG~~Ia~~~~~~~~~~I~v~d~~~g~---------~~-~Lt-~~~~~~~p~~sp-dG~~i~~~s~~~g~~~ 404 (433)
T PRK04922 340 RASVS---PDGKKIAMVHGSGGQYRIAVMDLSTGS---------VR-TLT-PGSLDESPSFAP-NGSMVLYATREGGRGV 404 (433)
T ss_pred CEEEC---CCCCEEEEEECCCCceeEEEEECCCCC---------eE-ECC-CCCCCCCceECC-CCCEEEEEEecCCceE
Confidence 67888 899998876543 269999998763 22 111 222334567877 78777766543 35
Q ss_pred EEEeeC
Q 018858 343 VKVYSI 348 (349)
Q Consensus 343 i~iw~~ 348 (349)
+.++++
T Consensus 405 L~~~~~ 410 (433)
T PRK04922 405 LAAVST 410 (433)
T ss_pred EEEEEC
Confidence 666654
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.1e-12 Score=103.63 Aligned_cols=276 Identities=17% Similarity=0.211 Sum_probs=163.8
Q ss_pred CcEEEEEC--CCCcE--EEEeecCCCCeEEEEEecCCCEEEEEeC----CCeEEEEEccCC-CcccceeeccCcccceEE
Q 018858 38 GCICWFDL--RSKDV--QLVTDVGNGPVTSLCFKSGNEDIIYVSS----GKEVKSFDVHMP-ASWRPLESYNYNKEEINQ 108 (349)
Q Consensus 38 g~i~vwd~--~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~-~~~~~~~~~~~~~~~v~~ 108 (349)
+.|++|++ +++++ +..+. .......++++|++++|.+... ++.|..|++... .....+............
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~ 91 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCH 91 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEE
T ss_pred CcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEE
Confidence 68998888 44443 22222 3345667899999999998876 469999998864 234444444323355678
Q ss_pred EEEccCCCEEEEEc-CCCcEEEEEcCC-ceEeceec-cccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecC
Q 018858 109 IVCNPKSSFLACAD-DGGDVKIIDIRQ-HCLYKSLR-AGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIP 185 (349)
Q Consensus 109 ~~~~~~~~~l~~~~-~dg~i~i~d~~~-~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (349)
++++|++++|+++. .+|.|.++++.. +....... ..+.+. .| ..........|.+.+.
T Consensus 92 i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~------g~-------------~~~rq~~~h~H~v~~~ 152 (345)
T PF10282_consen 92 IAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGS------GP-------------NPDRQEGPHPHQVVFS 152 (345)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEE------ES-------------STTTTSSTCEEEEEE-
T ss_pred EEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCC------CC-------------cccccccccceeEEEC
Confidence 99999999988876 588999999986 43322210 001000 01 0001111223444444
Q ss_pred cccccCCCCcEEEEEc-CCCeEEEEEccCce--e--eeecCCCCCCccceeeeeccccEEEEeeeeeecC--------ce
Q 018858 186 DADMLDKTNKICVVAK-GDGVVDVINIESEL--N--ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG--------GK 252 (349)
Q Consensus 186 ~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 252 (349)
| +++++++.. ....|.+|++.... . ......+.....+.++|+|+++++.+.......+ ..
T Consensus 153 p------dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g 226 (345)
T PF10282_consen 153 P------DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDG 226 (345)
T ss_dssp T------TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred C------CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCC
Confidence 4 788777764 44589999997654 2 2234556677789999999999987633221110 11
Q ss_pred eeeeeeeec---C---CCcceEEEEEeeecCCccEEEEee-CCCeEEEEecCCCcceecccccceeeeccccccceEEEE
Q 018858 253 RLHLDYSVG---G---HTAAASCVAFSMFGERGKYLISGG-NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLC 325 (349)
Q Consensus 253 ~~~~~~~~~---~---h~~~i~~i~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 325 (349)
....+.... . .......|.++ |||++|+++. .++.|.+|++....... ..+............++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~i~is---pdg~~lyvsnr~~~sI~vf~~d~~~g~l-----~~~~~~~~~G~~Pr~~~ 298 (345)
T PF10282_consen 227 SLTEIQTISTLPEGFTGENAPAEIAIS---PDGRFLYVSNRGSNSISVFDLDPATGTL-----TLVQTVPTGGKFPRHFA 298 (345)
T ss_dssp EEEEEEEEESCETTSCSSSSEEEEEE----TTSSEEEEEECTTTEEEEEEECTTTTTE-----EEEEEEEESSSSEEEEE
T ss_pred ceeEEEEeeeccccccccCCceeEEEe---cCCCEEEEEeccCCEEEEEEEecCCCce-----EEEEEEeCCCCCccEEE
Confidence 122222211 1 11257889999 8999987765 56889999994321100 22222222334578899
Q ss_pred eecCCCCcEEEee-CCCeEEEeeC
Q 018858 326 TTPTESENLVVCD-TSKVVKVYSI 348 (349)
Q Consensus 326 ~~~~~~~~l~~~~-~dg~i~iw~~ 348 (349)
++| ++++|+++. .++.|.+|++
T Consensus 299 ~s~-~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 299 FSP-DGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp E-T-TSSEEEEEETTTTEEEEEEE
T ss_pred EeC-CCCEEEEEecCCCeEEEEEE
Confidence 988 888888886 6688999875
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-13 Score=117.38 Aligned_cols=206 Identities=15% Similarity=0.114 Sum_probs=128.4
Q ss_pred CcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCC---CeEEEEEccCCCcccceeeccCcccceEEEEEccC
Q 018858 38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG---KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK 114 (349)
Q Consensus 38 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 114 (349)
..|.++|.. +.....+..+...+.+.+|+|+|+.|+..+.+ ..|.+||+.+++. ..+... .......+|+|+
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~-~~l~~~---~g~~~~~~~SPD 250 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR-RVVANF---KGSNSAPAWSPD 250 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE-EEeecC---CCCccceEECCC
Confidence 467777874 44344455677889999999999999887743 4699999987643 233323 244568899999
Q ss_pred CCEEE-EEcCCCcEEEE--EcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccC
Q 018858 115 SSFLA-CADDGGDVKII--DIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLD 191 (349)
Q Consensus 115 ~~~l~-~~~~dg~i~i~--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (349)
++.|+ +.+.+|...+| |+..+. ...+. .+........|+|
T Consensus 251 G~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt-~~~~~~~~~~wSp----------------------------------- 293 (427)
T PRK02889 251 GRTLAVALSRDGNSQIYTVNADGSG-LRRLT-QSSGIDTEPFFSP----------------------------------- 293 (427)
T ss_pred CCEEEEEEccCCCceEEEEECCCCC-cEECC-CCCCCCcCeEEcC-----------------------------------
Confidence 98886 45677775555 444443 34444 3444556778988
Q ss_pred CCCcEEEEEc-CCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEE
Q 018858 192 KTNKICVVAK-GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCV 270 (349)
Q Consensus 192 ~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i 270 (349)
+|+.|+..+ .+|...+|.+.... . ....+ .+. .......
T Consensus 294 -DG~~l~f~s~~~g~~~Iy~~~~~~-----------------------------------g-~~~~l-t~~--g~~~~~~ 333 (427)
T PRK02889 294 -DGRSIYFTSDRGGAPQIYRMPASG-----------------------------------G-AAQRV-TFT--GSYNTSP 333 (427)
T ss_pred -CCCEEEEEecCCCCcEEEEEECCC-----------------------------------C-ceEEE-ecC--CCCcCce
Confidence 788776554 45666666654210 0 00111 111 1223356
Q ss_pred EEeeecCCccEEEEeeCCC---eEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCC
Q 018858 271 AFSMFGERGKYLISGGNDK---LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS 340 (349)
Q Consensus 271 ~~~~~~~~~~~l~s~~~d~---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 340 (349)
.|+ |+|++|+..+.++ .|++||+.+++. . .... ........|+| +++.|+.++.+
T Consensus 334 ~~S---pDG~~Ia~~s~~~g~~~I~v~d~~~g~~---------~-~lt~-~~~~~~p~~sp-dg~~l~~~~~~ 391 (427)
T PRK02889 334 RIS---PDGKLLAYISRVGGAFKLYVQDLATGQV---------T-ALTD-TTRDESPSFAP-NGRYILYATQQ 391 (427)
T ss_pred EEC---CCCCEEEEEEccCCcEEEEEEECCCCCe---------E-EccC-CCCccCceECC-CCCEEEEEEec
Confidence 788 8999998776543 699999988632 1 1111 12235678888 77777776643
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.5e-13 Score=102.58 Aligned_cols=150 Identities=17% Similarity=0.303 Sum_probs=105.6
Q ss_pred EEEEEecCCCEEEEEeC----------CCeEEEEEccCCCcccceeeccC-cccceEEEEEccCCCEEEEE--cCCCcEE
Q 018858 62 TSLCFKSGNEDIIYVSS----------GKEVKSFDVHMPASWRPLESYNY-NKEEINQIVCNPKSSFLACA--DDGGDVK 128 (349)
Q Consensus 62 ~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~--~~dg~i~ 128 (349)
..+.|+|+|++|+.-.. -+...+|.++.... ....+.. ..+.|.+++|+|+++.|++. ..++.|.
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~--~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI--PVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVT 86 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC--ccceeeccCCCceEEEEECcCCCEEEEEEccCCcccE
Confidence 45789999988776443 14566676644321 1222211 23569999999999887544 4567899
Q ss_pred EEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcC---CCe
Q 018858 129 IIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG---DGV 205 (349)
Q Consensus 129 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~ 205 (349)
+||++ ++.+..+. ...+..+.|+| +|++|++++. .|.
T Consensus 87 lyd~~-~~~i~~~~---~~~~n~i~wsP------------------------------------~G~~l~~~g~~n~~G~ 126 (194)
T PF08662_consen 87 LYDVK-GKKIFSFG---TQPRNTISWSP------------------------------------DGRFLVLAGFGNLNGD 126 (194)
T ss_pred EEcCc-ccEeEeec---CCCceEEEECC------------------------------------CCCEEEEEEccCCCcE
Confidence 99996 55555554 35678899999 8999998864 467
Q ss_pred EEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEe
Q 018858 206 VDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISG 285 (349)
Q Consensus 206 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~ 285 (349)
|.+||.++. +.+.... | ..++.++|+ |+|++|+++
T Consensus 127 l~~wd~~~~----------------------------------------~~i~~~~-~-~~~t~~~Ws---PdGr~~~ta 161 (194)
T PF08662_consen 127 LEFWDVRKK----------------------------------------KKISTFE-H-SDATDVEWS---PDGRYLATA 161 (194)
T ss_pred EEEEECCCC----------------------------------------EEeeccc-c-CcEEEEEEc---CCCCEEEEE
Confidence 999999964 3333332 3 346899999 899999988
Q ss_pred eC------CCeEEEEecCC
Q 018858 286 GN------DKLVKVWDCSR 298 (349)
Q Consensus 286 ~~------d~~i~vwd~~~ 298 (349)
.. |+.++||+...
T Consensus 162 ~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 162 TTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred EeccceeccccEEEEEecC
Confidence 74 78899999875
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.3e-13 Score=103.73 Aligned_cols=201 Identities=13% Similarity=0.215 Sum_probs=147.4
Q ss_pred ceeeeEEEEecCCCceEEEeCCCCcEEEEECC----CCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 018858 15 KATATCCIASRDRPGFVASSGEDGCICWFDLR----SKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP 90 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 90 (349)
..+++++.+.++ ...|+.|-.+|++.-+.+. ....++....|...+..+-|+...+.+++.+.|..+.---.+.+
T Consensus 68 P~~~~~~~y~~e-~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~ 146 (404)
T KOG1409|consen 68 PSPCSAMEYVSE-SRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESG 146 (404)
T ss_pred CCCceEeeeecc-ceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccC
Confidence 356889999998 7899999999999988764 34445667789999999999999999999999987654444443
Q ss_pred CcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcC--CceEeceeccccccceeEEEEccCCCCCCCCCCCC
Q 018858 91 ASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIR--QHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNG 168 (349)
Q Consensus 91 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 168 (349)
....-... ....+++.+.-. +...|...|.|..-.+. .-.++..+. +|.+.+.+++|.|
T Consensus 147 ~~lg~Y~~----~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~-~h~~~~~~l~Wd~------------ 207 (404)
T KOG1409|consen 147 NRLGGYNF----ETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFN-GHTGEVTCLKWDP------------ 207 (404)
T ss_pred CcccceEe----eccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEc-CcccceEEEEEcC------------
Confidence 22111100 011111111111 44556666666665554 445677788 8999999999999
Q ss_pred CCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeee
Q 018858 169 NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ 248 (349)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (349)
....|++|..|..+.+||+-..+
T Consensus 208 ------------------------~~~~LfSg~~d~~vi~wdigg~~--------------------------------- 230 (404)
T KOG1409|consen 208 ------------------------GQRLLFSGASDHSVIMWDIGGRK--------------------------------- 230 (404)
T ss_pred ------------------------CCcEEEeccccCceEEEeccCCc---------------------------------
Confidence 78899999999999999998532
Q ss_pred cCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcc
Q 018858 249 SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG 301 (349)
Q Consensus 249 ~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 301 (349)
.....+.+|...|..+... +--+.+.++++||.|.+|+++....
T Consensus 231 ------g~~~el~gh~~kV~~l~~~---~~t~~l~S~~edg~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 231 ------GTAYELQGHNDKVQALSYA---QHTRQLISCGEDGGIVVWNMNVKRV 274 (404)
T ss_pred ------ceeeeeccchhhhhhhhhh---hhheeeeeccCCCeEEEEeccceee
Confidence 3446778899999988887 6778999999999999999986543
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.9e-13 Score=103.44 Aligned_cols=210 Identities=12% Similarity=0.153 Sum_probs=145.4
Q ss_pred CCcEEEEECCCCcEEE--Eee-cCCCCeEEEEEec---CCC-EEEEEeCCCeEEEEEccCCCcccceeeccCcc---cce
Q 018858 37 DGCICWFDLRSKDVQL--VTD-VGNGPVTSLCFKS---GNE-DIIYVSSGKEVKSFDVHMPASWRPLESYNYNK---EEI 106 (349)
Q Consensus 37 dg~i~vwd~~~~~~~~--~~~-~~~~~v~~~~~~~---~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~~v 106 (349)
.|.+.+|++.+.+... +++ .....+..+.|.- +|. .++-+-.+|.|.++..........+..+..-+ ...
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 4678899988765432 222 1335566777753 444 45666678999999766433222232222111 234
Q ss_pred EEEEEccCCCEEEEEcCCCcEEEEEcCCceE--eceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeec
Q 018858 107 NQIVCNPKSSFLACADDGGDVKIIDIRQHCL--YKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAI 184 (349)
Q Consensus 107 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (349)
.++.|++.+..++++..+|.+.+.+...... .+..+ .|.-.+....|+.+
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk-~He~E~Wta~f~~~--------------------------- 176 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWK-VHEFEAWTAKFSDK--------------------------- 176 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccc-ccceeeeeeecccC---------------------------
Confidence 5778899898899999999999776655443 34777 89989999999875
Q ss_pred CcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCC
Q 018858 185 PDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHT 264 (349)
Q Consensus 185 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 264 (349)
+.+++.+|+.|+.+..||++... .......+-|.
T Consensus 177 --------~pnlvytGgDD~~l~~~D~R~p~--------------------------------------~~i~~n~kvH~ 210 (339)
T KOG0280|consen 177 --------EPNLVYTGGDDGSLSCWDIRIPK--------------------------------------TFIWHNSKVHT 210 (339)
T ss_pred --------CCceEEecCCCceEEEEEecCCc--------------------------------------ceeeecceeee
Confidence 67899999999999999999421 02223345588
Q ss_pred cceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCC
Q 018858 265 AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTES 331 (349)
Q Consensus 265 ~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 331 (349)
..|.+|.-+| |++.++++|+.|-.|++||.++.. +++. ...-.+.|+.+.++|...
T Consensus 211 ~GV~SI~ss~--~~~~~I~TGsYDe~i~~~DtRnm~--------kPl~-~~~v~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 211 SGVVSIYSSP--PKPTYIATGSYDECIRVLDTRNMG--------KPLF-KAKVGGGVWRIKHHPEIF 266 (339)
T ss_pred cceEEEecCC--CCCceEEEeccccceeeeehhccc--------Cccc-cCccccceEEEEecchhh
Confidence 8999999998 888999999999999999999753 2221 122347888888888543
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.7e-13 Score=113.86 Aligned_cols=166 Identities=14% Similarity=0.156 Sum_probs=114.1
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCC---CcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEE-eCC
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGED---GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYV-SSG 79 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d 79 (349)
.+...+.+..+...+...+|+|+ +++|+.+..+ ..|++||+.+++... +..+...+.+++|+|+++.|+.. +.+
T Consensus 178 ~g~~~~~l~~~~~~~~~p~~Spd-g~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~ 255 (417)
T TIGR02800 178 DGANPQTITRSREPILSPAWSPD-GQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKD 255 (417)
T ss_pred CCCCCEEeecCCCceecccCCCC-CCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCC
Confidence 34556777777778899999999 7777765433 479999998876543 33355567778999999987654 444
Q ss_pred C--eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcC-CC--cEEEEEcCCceEeceeccccccceeEEEE
Q 018858 80 K--EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-GG--DVKIIDIRQHCLYKSLRAGHSSICSSVQF 154 (349)
Q Consensus 80 g--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 154 (349)
+ .|++||+.++.. ..+ ..+........|+|+++.|+..+. .+ .|+++|+.+++.. .+. .+........|
T Consensus 256 ~~~~i~~~d~~~~~~-~~l---~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~-~~~~~~~~~~~ 329 (417)
T TIGR02800 256 GNPDIYVMDLDGKQL-TRL---TNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLT-FRGGYNASPSW 329 (417)
T ss_pred CCccEEEEECCCCCE-EEC---CCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-Eee-cCCCCccCeEE
Confidence 3 688889886532 222 222333456789999998876554 33 5888888776543 333 24455667788
Q ss_pred ccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCC---eEEEEEccC
Q 018858 155 IPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG---VVDVINIES 213 (349)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~ 213 (349)
+| ++++++.++.++ .|.+||+.+
T Consensus 330 sp------------------------------------dg~~i~~~~~~~~~~~i~~~d~~~ 355 (417)
T TIGR02800 330 SP------------------------------------DGDLIAFVHREGGGFNIAVMDLDG 355 (417)
T ss_pred CC------------------------------------CCCEEEEEEccCCceEEEEEeCCC
Confidence 88 788888777665 788888875
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.6e-13 Score=104.96 Aligned_cols=260 Identities=13% Similarity=0.173 Sum_probs=166.2
Q ss_pred ceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc-----EEEEeecCC------------CCeEEEEEecCCC--EEEE
Q 018858 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKD-----VQLVTDVGN------------GPVTSLCFKSGNE--DIIY 75 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~~--~l~~ 75 (349)
.+-|.++.|... |.+|+||..+|.+.++.-+... ....++.|. ..|..+.|.++++ .++.
T Consensus 25 adiis~vef~~~-Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 25 ADIISAVEFDHY-GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hcceeeEEeecc-cceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 456899999998 9999999999999999754322 223344443 4678899987654 5777
Q ss_pred EeCCCeEEEEEccCCCccc---------------c--ee----------------eccCcccceEEEEEccCCCEEEEEc
Q 018858 76 VSSGKEVKSFDVHMPASWR---------------P--LE----------------SYNYNKEEINQIVCNPKSSFLACAD 122 (349)
Q Consensus 76 ~~~dg~i~iwd~~~~~~~~---------------~--~~----------------~~~~~~~~v~~~~~~~~~~~l~~~~ 122 (349)
.+.|.+|++|.+......+ . +. ...+|.-.+.++.++.|...++++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA- 182 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA- 182 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-
Confidence 8889999999886432111 0 00 012456678899999998888876
Q ss_pred CCCcEEEEEcCC-ceEe--ceecc----ccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCc
Q 018858 123 DGGDVKIIDIRQ-HCLY--KSLRA----GHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK 195 (349)
Q Consensus 123 ~dg~i~i~d~~~-~~~~--~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (349)
.|=.|.+|+++- .+.. --+++ .-..-|++..|+|. ..+
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~-----------------------------------~cn 227 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPH-----------------------------------HCN 227 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHh-----------------------------------Hcc
Confidence 456799999872 2211 11120 12345778888884 567
Q ss_pred EEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeee
Q 018858 196 ICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMF 275 (349)
Q Consensus 196 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~ 275 (349)
.|+-.+..|.|++.|++.....-......+. ........-+..--..|..+.|+
T Consensus 228 ~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEe------------------------pedp~~rsffseiIsSISDvKFs-- 281 (433)
T KOG1354|consen 228 VFVYSSSKGTIRLCDMRQSALCDAHSKLFEE------------------------PEDPSSRSFFSEIISSISDVKFS-- 281 (433)
T ss_pred EEEEecCCCcEEEeechhhhhhcchhhhhcc------------------------ccCCcchhhHHHHhhhhhceEEc--
Confidence 8888899999999999953211100000000 00000001111223578899999
Q ss_pred cCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccc------------cce---EEEEeecCCCCcEEEeeCC
Q 018858 276 GERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLN------------KKV---NWLCTTPTESENLVVCDTS 340 (349)
Q Consensus 276 ~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~------------~~v---~~~~~~~~~~~~l~~~~~d 340 (349)
++|+|+++-+. -+|++||+.... +++....-|. +.| ..++|+- ++.+++||+..
T Consensus 282 -~sGryilsRDy-ltvk~wD~nme~--------~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~ 350 (433)
T KOG1354|consen 282 -HSGRYILSRDY-LTVKLWDLNMEA--------KPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYN 350 (433)
T ss_pred -cCCcEEEEecc-ceeEEEeccccC--------CcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-CcceEeccccc
Confidence 89999998764 689999995532 2222332222 122 3456755 66699999999
Q ss_pred CeEEEeeC
Q 018858 341 KVVKVYSI 348 (349)
Q Consensus 341 g~i~iw~~ 348 (349)
..++++++
T Consensus 351 n~frvf~~ 358 (433)
T KOG1354|consen 351 NVFRVFNL 358 (433)
T ss_pred ceEEEecC
Confidence 99999884
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.5e-14 Score=112.92 Aligned_cols=257 Identities=15% Similarity=0.103 Sum_probs=176.4
Q ss_pred EEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccC--CCEEEEEcCCCcEE
Q 018858 51 QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK--SSFLACADDGGDVK 128 (349)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~ 128 (349)
...+..|.+.|..+.|+..|..+++++.|..|.+||+..++ ..+....+|...|....|-|. .+.+++++.||.++
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~--~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGS--PKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccC--cccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 34667899999999999999999999999999999998754 334445667777877788874 47899999999999
Q ss_pred EEEcC-CceEe--ceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCe
Q 018858 129 IIDIR-QHCLY--KSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGV 205 (349)
Q Consensus 129 i~d~~-~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 205 (349)
+=.+. ++.+. ..+. .|.++|..++..|+ ....|.+++.|+.
T Consensus 213 ~s~i~~t~~~e~t~rl~-~h~g~vhklav~p~-----------------------------------sp~~f~S~geD~~ 256 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLA-PHEGPVHKLAVEPD-----------------------------------SPKPFLSCGEDAV 256 (559)
T ss_pred eeeeccccceecceecc-cccCccceeeecCC-----------------------------------CCCcccccccccc
Confidence 87765 33332 2333 68889999998885 5677899999999
Q ss_pred EEEEEccCceeeeec---CCCCC--CccceeeeeccccEEEEeeeeeecCce----e------eeeeeeec------CCC
Q 018858 206 VDVINIESELNISRS---KSTTK--PLKGSQSTSKVNIRDAEMEILDQSGGK----R------LHLDYSVG------GHT 264 (349)
Q Consensus 206 i~i~d~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~----~------~~~~~~~~------~h~ 264 (349)
+.-+|++.......+ ....+ .....++..|......+.+..+..... . ...+..+. ...
T Consensus 257 v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~ 336 (559)
T KOG1334|consen 257 VFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDP 336 (559)
T ss_pred eeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCc
Confidence 999999875432221 12222 245567788877644434443332111 0 01112222 223
Q ss_pred cceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceeccc---ccceeee-cccccc--ceEEEEeecCCCCcEEEee
Q 018858 265 AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSI---NNDLLIK-NINLNK--KVNWLCTTPTESENLVVCD 338 (349)
Q Consensus 265 ~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~---~~~~~~~-~~~~~~--~v~~~~~~~~~~~~l~~~~ 338 (349)
..|++++|+ .++.-|+++-.|-.|+++.-..+....... ....... +.+|.. .|..+-|+-+..+++++|+
T Consensus 337 v~ITgl~Ys---h~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGS 413 (559)
T KOG1334|consen 337 VNITGLVYS---HDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGS 413 (559)
T ss_pred ccceeEEec---CCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecC
Confidence 479999999 788888888889999999544332211100 0122222 677765 3777878776888999999
Q ss_pred CCCeEEEeeC
Q 018858 339 TSKVVKVYSI 348 (349)
Q Consensus 339 ~dg~i~iw~~ 348 (349)
+-|.|.||+-
T Consensus 414 DCGhIFiW~K 423 (559)
T KOG1334|consen 414 DCGHIFIWDK 423 (559)
T ss_pred ccceEEEEec
Confidence 9999999983
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2e-12 Score=110.18 Aligned_cols=213 Identities=12% Similarity=0.033 Sum_probs=128.0
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCce---EEEeCCC--CcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeC
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGF---VASSGED--GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS 78 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~---l~t~~~d--g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 78 (349)
.+...+.|......+..-.|+|+ |+. +++...+ ..|.+.++.+++.... ....+.....+|+|||+.|+..+.
T Consensus 173 dG~~~~~lt~~~~~~~sP~wSPD-G~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG~~Laf~s~ 250 (428)
T PRK01029 173 DGQNLRPLTQEHSLSITPTWMHI-GSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRKKLLAFISD 250 (428)
T ss_pred CCCCceEcccCCCCcccceEccC-CCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCCCEEEEEEC
Confidence 34556667666667788899999 543 3355444 3577888887764332 223444566899999999887653
Q ss_pred -CC----eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEc-CCCc--EEEEEcCC-ceEeceeccccccce
Q 018858 79 -GK----EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACAD-DGGD--VKIIDIRQ-HCLYKSLRAGHSSIC 149 (349)
Q Consensus 79 -dg----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~--i~i~d~~~-~~~~~~~~~~~~~~v 149 (349)
+| .+.+|++..+...................+|+|||+.|+..+ .+|. |+++++.. +.....+. .....+
T Consensus 251 ~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt-~~~~~~ 329 (428)
T PRK01029 251 RYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT-KKYRNS 329 (428)
T ss_pred CCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec-cCCCCc
Confidence 22 344467664321111111211123345689999999887655 4565 44445432 22233344 334456
Q ss_pred eEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCC---CeEEEEEccCceeeeecCCCCCC
Q 018858 150 SSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD---GVVDVINIESELNISRSKSTTKP 226 (349)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~ 226 (349)
....|+| +|+.|+..+.+ ..|.+||+.+++.
T Consensus 330 ~~p~wSP------------------------------------DG~~Laf~~~~~g~~~I~v~dl~~g~~---------- 363 (428)
T PRK01029 330 SCPAWSP------------------------------------DGKKIAFCSVIKGVRQICVYDLATGRD---------- 363 (428)
T ss_pred cceeECC------------------------------------CCCEEEEEEcCCCCcEEEEEECCCCCe----------
Confidence 7788988 78877765432 4688999886421
Q ss_pred ccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeC---CCeEEEEecCCC
Q 018858 227 LKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN---DKLVKVWDCSRF 299 (349)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~---d~~i~vwd~~~~ 299 (349)
..+......+....|+ |||++|+..+. +..|+++|+..+
T Consensus 364 -------------------------------~~Lt~~~~~~~~p~wS---pDG~~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 364 -------------------------------YQLTTSPENKESPSWA---IDSLHLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred -------------------------------EEccCCCCCccceEEC---CCCCEEEEEECCCCCceEEEEECCCC
Confidence 1222222345667888 89988765432 357889998876
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.5e-12 Score=106.35 Aligned_cols=189 Identities=17% Similarity=0.256 Sum_probs=150.7
Q ss_pred CCceEEEeCCCCcEEEEECCCCcEEEEeec---CCCCeEEEEEe------c--------------CCCEEEEEeCCCeEE
Q 018858 27 RPGFVASSGEDGCICWFDLRSKDVQLVTDV---GNGPVTSLCFK------S--------------GNEDIIYVSSGKEVK 83 (349)
Q Consensus 27 ~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~---~~~~v~~~~~~------~--------------~~~~l~~~~~dg~i~ 83 (349)
...++|....||.+++|+...++....+.. -.+..++..|. | +...++-|...|.|.
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 368999999999999999998887666643 22344444442 1 334677788889999
Q ss_pred EEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCC
Q 018858 84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
+|++..++....+. -..|.+.|.++.++.+-..|.+++.|+.+..|+....+.+..++ .....+.+++.+|
T Consensus 84 ~ys~~~g~it~~~s-t~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~-~~~~~~~sl~is~------- 154 (541)
T KOG4547|consen 84 LYSVAGGEITAKLS-TDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWK-EQKPLVSSLCISP------- 154 (541)
T ss_pred EEEecCCeEEEEEe-cCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeec-cCCCccceEEEcC-------
Confidence 99998775433333 34578899999999999999999999999999999999999888 7778899999999
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
++..+++|+ +.|++||+++.
T Consensus 155 -----------------------------D~~~l~~as--~~ik~~~~~~k----------------------------- 174 (541)
T KOG4547|consen 155 -----------------------------DGKILLTAS--RQIKVLDIETK----------------------------- 174 (541)
T ss_pred -----------------------------CCCEEEecc--ceEEEEEccCc-----------------------------
Confidence 789999886 67999999985
Q ss_pred eeeeecCceeeeeeeeecCCCcceEEEEEeeecCC-----ccEEEEe-eCCCeEEEEecCC
Q 018858 244 EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGER-----GKYLISG-GNDKLVKVWDCSR 298 (349)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~-----~~~l~s~-~~d~~i~vwd~~~ 298 (349)
+.+..+.+|.++|+++.|. .+ |.+++++ ..+.-+.+|-+..
T Consensus 175 -----------evv~~ftgh~s~v~t~~f~---~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 175 -----------EVVITFTGHGSPVRTLSFT---TLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred -----------eEEEEecCCCcceEEEEEE---EeccccccceeeeccccccceeEEEEEc
Confidence 7788999999999999998 45 6666655 4566688887765
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.4e-13 Score=109.08 Aligned_cols=307 Identities=12% Similarity=0.055 Sum_probs=190.3
Q ss_pred eEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeC-----------CCeEEEEEc
Q 018858 19 TCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS-----------GKEVKSFDV 87 (349)
Q Consensus 19 ~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------dg~i~iwd~ 87 (349)
+-+.|||. |.||+|-...| |.+|--++-..++.+. |. .|.-+.|||+.+||++=+. ...+.|||+
T Consensus 214 tyv~wSP~-GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 214 TYVRWSPK-GTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeEEecCC-ceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 44789999 89999988765 8899766555566665 43 5888999999999998653 158999999
Q ss_pred cCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCC--CC
Q 018858 88 HMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGL--PE 165 (349)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~ 165 (349)
.+|...+.+..+......-.-+.|+.|++++|.-.. ..|.||+..+-.++..-. ..-..|....|+|.+..++. .+
T Consensus 290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Ks-lki~gIr~FswsP~~~llAYwtpe 367 (698)
T KOG2314|consen 290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKS-LKISGIRDFSWSPTSNLLAYWTPE 367 (698)
T ss_pred cccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccc-cCCccccCcccCCCcceEEEEccc
Confidence 998776666655433233345789999999997776 469999977654443322 34456888999997655432 11
Q ss_pred CC----------CCCccccCCceeEEeecCcccccCCCCcEEEEEcC----------CCeEEEEEccCceeeeecCCCCC
Q 018858 166 NN----------GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG----------DGVVDVINIESELNISRSKSTTK 225 (349)
Q Consensus 166 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~ 225 (349)
.+ .+..+.++...+..++=..+ ++.++|.+|++--. -..+.|+.++.... .....+..
T Consensus 368 ~~~~parvtL~evPs~~~iRt~nlfnVsDckL-hWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI-pve~velk 445 (698)
T KOG2314|consen 368 TNNIPARVTLMEVPSKREIRTKNLFNVSDCKL-HWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI-PVEVVELK 445 (698)
T ss_pred ccCCcceEEEEecCccceeeeccceeeeccEE-EeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC-Cceeeecc
Confidence 11 23333333322222221111 12336777764321 12355666654322 22222334
Q ss_pred CccceeeeeccccEEEEeeeeeecCce----------eeeeeeeecCCCcceEEEEEeeecCCccEEEEee---CCCeEE
Q 018858 226 PLKGSQSTSKVNIRDAEMEILDQSGGK----------RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG---NDKLVK 292 (349)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~---~d~~i~ 292 (349)
..+-..+|.|.|..+++....+..... ...++..+. ....+.+.|+ |.|++++.+. ..|.+.
T Consensus 446 e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfws---PkG~fvvva~l~s~~g~l~ 520 (698)
T KOG2314|consen 446 ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWS---PKGRFVVVAALVSRRGDLE 520 (698)
T ss_pred hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEc---CCCcEEEEEEecccccceE
Confidence 566778999999999875444332222 122223332 2345789999 8999998765 568999
Q ss_pred EEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCC------CeEEEeeC
Q 018858 293 VWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS------KVVKVYSI 348 (349)
Q Consensus 293 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~iw~~ 348 (349)
++|+... ........-....+.+.|.| .|+|++|++.- .--++|++
T Consensus 521 F~D~~~a---------~~k~~~~~eh~~at~veWDP-tGRYvvT~ss~wrhk~d~GYri~tf 572 (698)
T KOG2314|consen 521 FYDTDYA---------DLKDTASPEHFAATEVEWDP-TGRYVVTSSSSWRHKVDNGYRIFTF 572 (698)
T ss_pred EEecchh---------hhhhccCccccccccceECC-CCCEEEEeeehhhhccccceEEEEe
Confidence 9999853 12112222223456788988 89999999753 44555553
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-13 Score=119.66 Aligned_cols=192 Identities=16% Similarity=0.135 Sum_probs=151.8
Q ss_pred EEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCC----eEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccce
Q 018858 21 CIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGP----VTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPL 96 (349)
Q Consensus 21 ~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 96 (349)
..+.-+ ...++.+..+..+.+||...+.....+...... ..-+.++++.-++++|+.-+.|.+|+.... ..+.
T Consensus 93 ~~l~~e-~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~d--n~p~ 169 (967)
T KOG0974|consen 93 AKLFEE-NKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHED--NKPI 169 (967)
T ss_pred cchhhh-cceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecccc--CCcc
Confidence 334444 467777788889999999877766665543322 222345677778999999999999998832 2222
Q ss_pred eeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEec-eeccccccceeEEEEccCCCCCCCCCCCCCCccccC
Q 018858 97 ESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYK-SLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYN 175 (349)
Q Consensus 97 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (349)
.+.+|++.+..+.++.+|+++++.++|..+++|++.+.+... ..- +|...+..+.|.|
T Consensus 170 -~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~f-gHsaRvw~~~~~~------------------- 228 (967)
T KOG0974|consen 170 -RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGF-GHSARVWACCFLP------------------- 228 (967)
T ss_pred -eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccc-cccceeEEEEecc-------------------
Confidence 567899999999999999999999999999999999888766 334 7999999999998
Q ss_pred CceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeee
Q 018858 176 PAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLH 255 (349)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (349)
+ .+++++.|-+.++|+.+. .
T Consensus 229 -----------------n--~i~t~gedctcrvW~~~~-----------------------------------------~ 248 (967)
T KOG0974|consen 229 -----------------N--RIITVGEDCTCRVWGVNG-----------------------------------------T 248 (967)
T ss_pred -----------------c--eeEEeccceEEEEEeccc-----------------------------------------c
Confidence 4 899999999999997764 3
Q ss_pred eeeeecCCC-cceEEEEEeeecCCccEEEEeeCCCeEEEEecCCC
Q 018858 256 LDYSVGGHT-AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 256 ~~~~~~~h~-~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 299 (349)
.+..+.+|. ..|..++.. ++...++|++.|+.+++||+...
T Consensus 249 ~l~~y~~h~g~~iw~~~~~---~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 249 QLEVYDEHSGKGIWKIAVP---IGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred eehhhhhhhhcceeEEEEc---CCceEEEeeccCcchhhhhhhcc
Confidence 333666775 478999998 78889999999999999998764
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.9e-12 Score=109.66 Aligned_cols=145 Identities=11% Similarity=0.042 Sum_probs=93.9
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCC---CcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEE-eCC
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGED---GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYV-SSG 79 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~d---g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d 79 (349)
.+...+.+..+...+....|+|+ ++.|+..+.+ ..|.+||+.+++... +....+.+...+|+|+|+.|+.. ..+
T Consensus 187 ~g~~~~~l~~~~~~~~~p~wSpD-G~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~ 264 (430)
T PRK00178 187 DGARAVTLLQSREPILSPRWSPD-GKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKD 264 (430)
T ss_pred CCCCceEEecCCCceeeeeECCC-CCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccC
Confidence 34556777778888999999999 6776654432 468999998886533 33233445578999999988754 444
Q ss_pred C--eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcC-CC--cEEEEEcCCceEeceeccccccceeEEEE
Q 018858 80 K--EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-GG--DVKIIDIRQHCLYKSLRAGHSSICSSVQF 154 (349)
Q Consensus 80 g--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 154 (349)
| .|.++|+.+++. ..+ ..+........|+|+++.++..+. +| .|+++|+.+++...... .........|
T Consensus 265 g~~~Iy~~d~~~~~~-~~l---t~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~--~~~~~~~~~~ 338 (430)
T PRK00178 265 GNPEIYVMDLASRQL-SRV---TNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF--VGNYNARPRL 338 (430)
T ss_pred CCceEEEEECCCCCe-EEc---ccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec--CCCCccceEE
Confidence 4 688889887542 222 223344566789999988776553 33 57778887766432221 1222334677
Q ss_pred cc
Q 018858 155 IP 156 (349)
Q Consensus 155 ~~ 156 (349)
+|
T Consensus 339 Sp 340 (430)
T PRK00178 339 SA 340 (430)
T ss_pred CC
Confidence 77
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.6e-13 Score=118.98 Aligned_cols=193 Identities=15% Similarity=0.124 Sum_probs=146.6
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCccc----ceEEEEEccCCCEEEEEcCCCcEEEEEcCCce
Q 018858 61 VTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKE----EINQIVCNPKSSFLACADDGGDVKIIDIRQHC 136 (349)
Q Consensus 61 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 136 (349)
+....+..+.+.++.++.+..+.+||...+... ...+.... ...-+-++++.-++++|+.-+.|.+|+....+
T Consensus 90 i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~---~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn 166 (967)
T KOG0974|consen 90 IFGAKLFEENKKIALVTSRNSLLIRDSKNSSVL---SKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN 166 (967)
T ss_pred ccccchhhhcceEEEEEcCceEEEEecccCcee---hhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence 333455567788999999999999998864322 22221111 11123346667789999999999999988443
Q ss_pred EeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCcee
Q 018858 137 LYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN 216 (349)
Q Consensus 137 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 216 (349)
....+. +|.+.+..+.++. +|+++++.+.|..+|+|++.+.+
T Consensus 167 ~p~~l~-GHeG~iF~i~~s~------------------------------------dg~~i~s~SdDRsiRlW~i~s~~- 208 (967)
T KOG0974|consen 167 KPIRLK-GHEGSIFSIVTSL------------------------------------DGRYIASVSDDRSIRLWPIDSRE- 208 (967)
T ss_pred Ccceec-ccCCceEEEEEcc------------------------------------CCcEEEEEecCcceeeeeccccc-
Confidence 333566 8999999999998 89999999999999999999852
Q ss_pred eeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEec
Q 018858 217 ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDC 296 (349)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~ 296 (349)
.......+|...|..+.+. |+ .++|+++|.+.++|+.
T Consensus 209 --------------------------------------~~~~~~fgHsaRvw~~~~~---~n--~i~t~gedctcrvW~~ 245 (967)
T KOG0974|consen 209 --------------------------------------VLGCTGFGHSARVWACCFL---PN--RIITVGEDCTCRVWGV 245 (967)
T ss_pred --------------------------------------ccCcccccccceeEEEEec---cc--eeEEeccceEEEEEec
Confidence 1113556899999999999 66 9999999999999977
Q ss_pred CCCcceecccccceeeecccccc-ceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 297 SRFQGVQTSINNDLLIKNINLNK-KVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
+. ..+..+..|.. .+..++..+ +.-.++|++.||.+++|++
T Consensus 246 ~~----------~~l~~y~~h~g~~iw~~~~~~-~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 246 NG----------TQLEVYDEHSGKGIWKIAVPI-GVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred cc----------ceehhhhhhhhcceeEEEEcC-CceEEEeeccCcchhhhhh
Confidence 76 45556777654 588888865 6668999999999999986
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.8e-12 Score=107.99 Aligned_cols=204 Identities=14% Similarity=0.118 Sum_probs=129.7
Q ss_pred CcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCC---CeEEEEEccCCCcccceeeccCcccceEEEEEccC
Q 018858 38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG---KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK 114 (349)
Q Consensus 38 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 114 (349)
..|.++|..... ...+..+...+...+|+|+|++|+.+..+ ..|++||+.+++. ..+.. +...+..++|+|+
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~-~~~~~---~~~~~~~~~~spD 244 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR-EKVAS---FPGMNGAPAFSPD 244 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE-EEeec---CCCCccceEECCC
Confidence 468888876444 34455566778899999999999987654 4799999987643 22222 2345667899999
Q ss_pred CCEEEE-EcCCC--cEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccC
Q 018858 115 SSFLAC-ADDGG--DVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLD 191 (349)
Q Consensus 115 ~~~l~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (349)
++.|+. .+.++ .|++||+.+++... +. .+........|+|
T Consensus 245 g~~l~~~~~~~~~~~i~~~d~~~~~~~~-l~-~~~~~~~~~~~s~----------------------------------- 287 (417)
T TIGR02800 245 GSKLAVSLSKDGNPDIYVMDLDGKQLTR-LT-NGPGIDTEPSWSP----------------------------------- 287 (417)
T ss_pred CCEEEEEECCCCCccEEEEECCCCCEEE-CC-CCCCCCCCEEECC-----------------------------------
Confidence 987764 44444 58899988765433 33 2334445667888
Q ss_pred CCCcEEEEEcC-CC--eEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceE
Q 018858 192 KTNKICVVAKG-DG--VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAAS 268 (349)
Q Consensus 192 ~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 268 (349)
+++.|+..+. ++ .|.++|+.++. ...+..+...+.
T Consensus 288 -dg~~l~~~s~~~g~~~iy~~d~~~~~-----------------------------------------~~~l~~~~~~~~ 325 (417)
T TIGR02800 288 -DGKSIAFTSDRGGSPQIYMMDADGGE-----------------------------------------VRRLTFRGGYNA 325 (417)
T ss_pred -CCCEEEEEECCCCCceEEEEECCCCC-----------------------------------------EEEeecCCCCcc
Confidence 6777765543 33 56667766421 112222334456
Q ss_pred EEEEeeecCCccEEEEeeCCC---eEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCC
Q 018858 269 CVAFSMFGERGKYLISGGNDK---LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS 340 (349)
Q Consensus 269 ~i~~~~~~~~~~~l~s~~~d~---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 340 (349)
...|+ |+|++++.++.++ .|.+||+.++.. . ..... .......|+| +++.|+..+.+
T Consensus 326 ~~~~s---pdg~~i~~~~~~~~~~~i~~~d~~~~~~---------~-~l~~~-~~~~~p~~sp-dg~~l~~~~~~ 385 (417)
T TIGR02800 326 SPSWS---PDGDLIAFVHREGGGFNIAVMDLDGGGE---------R-VLTDT-GLDESPSFAP-NGRMILYATTR 385 (417)
T ss_pred CeEEC---CCCCEEEEEEccCCceEEEEEeCCCCCe---------E-EccCC-CCCCCceECC-CCCEEEEEEeC
Confidence 77888 8999998887765 789999887521 1 11111 1223456777 77777777654
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.1e-12 Score=106.78 Aligned_cols=191 Identities=13% Similarity=0.096 Sum_probs=146.2
Q ss_pred cCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEc------c--------------CCCEEEEEcCCCcE
Q 018858 68 SGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCN------P--------------KSSFLACADDGGDV 127 (349)
Q Consensus 68 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~------~--------------~~~~l~~~~~dg~i 127 (349)
|...++|....||.+++|+...++....+.....-.+..++..|. | +...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 456789999999999999998765433222211112334444442 1 22367889999999
Q ss_pred EEEEcCCceEeceec-cccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeE
Q 018858 128 KIIDIRQHCLYKSLR-AGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVV 206 (349)
Q Consensus 128 ~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 206 (349)
.+|++..++....+. ..|.+.|.++.++. +-..|.+++.|+.+
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~------------------------------------~~~ciyS~~ad~~v 126 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQ------------------------------------RLGCIYSVGADLKV 126 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeeccc------------------------------------ccCceEecCCceeE
Confidence 999999999887776 57889999999888 67889999999999
Q ss_pred EEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEee
Q 018858 207 DVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG 286 (349)
Q Consensus 207 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~ 286 (349)
..|+.... ..+.........+.++.++ ||++.+++++
T Consensus 127 ~~~~~~~~----------------------------------------~~~~~~~~~~~~~~sl~is---~D~~~l~~as 163 (541)
T KOG4547|consen 127 VYILEKEK----------------------------------------VIIRIWKEQKPLVSSLCIS---PDGKILLTAS 163 (541)
T ss_pred EEEecccc----------------------------------------eeeeeeccCCCccceEEEc---CCCCEEEecc
Confidence 99999874 4455566667788999999 8999999997
Q ss_pred CCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecC----CCCcEEEe-eCCCeEEEeeC
Q 018858 287 NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPT----ESENLVVC-DTSKVVKVYSI 348 (349)
Q Consensus 287 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~-~~dg~i~iw~~ 348 (349)
+.|++||+++. +++..+.+|.++|.++.|--. .|+++++. ..+.-+.+|-+
T Consensus 164 --~~ik~~~~~~k---------evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v 219 (541)
T KOG4547|consen 164 --RQIKVLDIETK---------EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVV 219 (541)
T ss_pred --ceEEEEEccCc---------eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEE
Confidence 58999999998 788899999999999998763 14555555 56666777753
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.8e-12 Score=108.73 Aligned_cols=143 Identities=14% Similarity=0.085 Sum_probs=89.4
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeC-CC--CcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEE-eCCC-
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSG-ED--GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYV-SSGK- 80 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~-~d--g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg- 80 (349)
...+.+..+...+.+..|+|+ ++.|+..+ .+ ..|++||+.+++... +..........+|+|+|+.|+.. +.++
T Consensus 208 ~~~~~l~~~~~~~~~p~wSPD-G~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~ 285 (448)
T PRK04792 208 YNEQMLLRSPEPLMSPAWSPD-GRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQ 285 (448)
T ss_pred CCceEeecCCCcccCceECCC-CCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCC
Confidence 334556666777889999999 67666543 23 358899998876532 22222334568999999988764 5555
Q ss_pred -eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcC-CC--cEEEEEcCCceEeceeccccccceeEEEEcc
Q 018858 81 -EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-GG--DVKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 81 -~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
.|.++|+.+++. . .+..+.......+|+|+++.|+..+. ++ .|+++|+.+++... +. .........+|+|
T Consensus 286 ~~Iy~~dl~tg~~-~---~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt-~~g~~~~~~~~Sp 359 (448)
T PRK04792 286 PEIYVVDIATKAL-T---RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LT-FEGEQNLGGSITP 359 (448)
T ss_pred eEEEEEECCCCCe-E---ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-Ee-cCCCCCcCeeECC
Confidence 477778876532 2 22223345567899999998876553 33 47777877665432 22 1122234467888
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-13 Score=127.00 Aligned_cols=191 Identities=16% Similarity=0.302 Sum_probs=153.6
Q ss_pred eeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeec-CCCCeEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 018858 10 RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDV-GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVH 88 (349)
Q Consensus 10 ~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 88 (349)
.++.|-..|.++.-+|. ..+.+||+.||.+++|....++.+..++. ....|+.+.|+.+|+.+..+..||.+.+|...
T Consensus 2203 ~~k~~v~~v~r~~sHp~-~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPS-DPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred EeecccCceeeecCCCC-CceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC
Confidence 34556678899988998 68899999999999999998887766542 33789999999999999999999999999887
Q ss_pred CCCcccceeeccCcccceEEEEEccCCCEEEEEc---CCCcEEEEEcCCc---eEeceeccccccceeEEEEccCCCCCC
Q 018858 89 MPASWRPLESYNYNKEEINQIVCNPKSSFLACAD---DGGDVKIIDIRQH---CLYKSLRAGHSSICSSVQFIPWKPWEG 162 (349)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~ 162 (349)
.++....+.|......+.|-. ..+++++ .++.+.+||..-. ..+. . .|.+.++++++-|
T Consensus 2282 ----pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~-~H~~gaT~l~~~P------ 2346 (2439)
T KOG1064|consen 2282 ----PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--T-CHDGGATVLAYAP------ 2346 (2439)
T ss_pred ----CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--e-ecCCCceEEEEcC------
Confidence 467777888888888888865 5566654 4788999997632 2233 4 7999999999999
Q ss_pred CCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEE
Q 018858 163 LPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE 242 (349)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (349)
..+.|++|+.+|.|++||++..
T Consensus 2347 ------------------------------~~qllisggr~G~v~l~D~rqr---------------------------- 2368 (2439)
T KOG1064|consen 2347 ------------------------------KHQLLISGGRKGEVCLFDIRQR---------------------------- 2368 (2439)
T ss_pred ------------------------------cceEEEecCCcCcEEEeehHHH----------------------------
Confidence 7899999999999999999964
Q ss_pred eeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCC
Q 018858 243 MEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 299 (349)
++++.++. +. ...++++|+..|.++||++...
T Consensus 2369 ------------ql~h~~~~---------~~----~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2369 ------------QLRHTFQA---------LD----TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred ------------HHHHHhhh---------hh----hhheeeccCcccceEEEEcccc
Confidence 33334432 22 4568999999999999999886
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.8e-10 Score=94.77 Aligned_cols=241 Identities=17% Similarity=0.159 Sum_probs=150.7
Q ss_pred eeEEEEecCCCceEEEeCC----CCcEEEEECCCC--cE--EEEeecCCCCeEEEEEecCCCEEEEEeC-CCeEEEEEcc
Q 018858 18 ATCCIASRDRPGFVASSGE----DGCICWFDLRSK--DV--QLVTDVGNGPVTSLCFKSGNEDIIYVSS-GKEVKSFDVH 88 (349)
Q Consensus 18 i~~~~~~~~~~~~l~t~~~----dg~i~vwd~~~~--~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~ 88 (349)
-..++++|+ +++|++... +|.|..|++... ++ +............++++|++++|+++.. +|.|.++++.
T Consensus 39 Ps~l~~~~~-~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~ 117 (345)
T PF10282_consen 39 PSWLAVSPD-GRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLD 117 (345)
T ss_dssp ECCEEE-TT-SSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CceEEEEeC-CCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEcc
Confidence 455788888 777777655 578999988753 33 3344434556678999999999999885 7899999998
Q ss_pred CC-Ccccceeec----------cCcccceEEEEEccCCCEEEEEc-CCCcEEEEEcCCce--E--eceeccccccceeEE
Q 018858 89 MP-ASWRPLESY----------NYNKEEINQIVCNPKSSFLACAD-DGGDVKIIDIRQHC--L--YKSLRAGHSSICSSV 152 (349)
Q Consensus 89 ~~-~~~~~~~~~----------~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~--~--~~~~~~~~~~~v~~~ 152 (349)
.. ......... ........++.++|+++++++.. ....|++|++.... . ...+........+.+
T Consensus 118 ~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~ 197 (345)
T PF10282_consen 118 DDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHL 197 (345)
T ss_dssp TTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEE
T ss_pred CCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEE
Confidence 63 222221111 01124577899999999887654 34579999997543 2 122222345667889
Q ss_pred EEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEE-EcCCCeEEEEEcc--Ccee--eee---cCC-C
Q 018858 153 QFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV-AKGDGVVDVINIE--SELN--ISR---SKS-T 223 (349)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~dg~i~i~d~~--~~~~--~~~---~~~-~ 223 (349)
.|+| +++++.+ .-.++.|.+|++. .+.. ... ... .
T Consensus 198 ~f~p------------------------------------dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 241 (345)
T PF10282_consen 198 AFSP------------------------------------DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGF 241 (345)
T ss_dssp EE-T------------------------------------TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTS
T ss_pred EEcC------------------------------------CcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccc
Confidence 9999 6766654 4578899999998 3322 111 111 1
Q ss_pred -CCCccceeeeeccccEEEEeeeeeec--------CceeeeeeeeecCCCcceEEEEEeeecCCccEEEEee-CCCeEEE
Q 018858 224 -TKPLKGSQSTSKVNIRDAEMEILDQS--------GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG-NDKLVKV 293 (349)
Q Consensus 224 -~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~-~d~~i~v 293 (349)
.......+.++|||+++.++...... .......+..+.......+.+.++ |+|++|+++. .++.|.+
T Consensus 242 ~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s---~~g~~l~Va~~~s~~v~v 318 (345)
T PF10282_consen 242 TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFS---PDGRYLYVANQDSNTVSV 318 (345)
T ss_dssp CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE----TTSSEEEEEETTTTEEEE
T ss_pred cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEe---CCCCEEEEEecCCCeEEE
Confidence 12256789999999999863322111 111223333343333457899999 8999998887 5688999
Q ss_pred EecCC
Q 018858 294 WDCSR 298 (349)
Q Consensus 294 wd~~~ 298 (349)
|++..
T Consensus 319 f~~d~ 323 (345)
T PF10282_consen 319 FDIDP 323 (345)
T ss_dssp EEEET
T ss_pred EEEeC
Confidence 98753
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.8e-12 Score=95.17 Aligned_cols=247 Identities=12% Similarity=0.024 Sum_probs=164.4
Q ss_pred eeeeEEEEec--CCCc-eEEEeCCCCcEEEEECCCCcEEEEeecCC------CCeEEEEEecCCCEEEEEeCCCeEEEEE
Q 018858 16 ATATCCIASR--DRPG-FVASSGEDGCICWFDLRSKDVQLVTDVGN------GPVTSLCFKSGNEDIIYVSSGKEVKSFD 86 (349)
Q Consensus 16 ~~i~~~~~~~--~~~~-~l~t~~~dg~i~vwd~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~dg~i~iwd 86 (349)
..+..+.|.. .++. .++-+..+|.|.++..........+.+-. ....++.|++.+..++++-.+|.+.+-+
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~ 149 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVY 149 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEe
Confidence 3455556642 3344 46666778899999876544433333211 1245778899999999999999998665
Q ss_pred ccCCCcccceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcC-CceEece-eccccccceeEEEEccCCCCCCC
Q 018858 87 VHMPASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIR-QHCLYKS-LRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~-~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
.... ..+..+.++.|+-+++-..|+... +.+.+|++|+.+..||+| .++.+.. .+ .|...|.+|.-+|.
T Consensus 150 ~t~~-~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~k-vH~~GV~SI~ss~~------ 221 (339)
T KOG0280|consen 150 ETEM-VLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSK-VHTSGVVSIYSSPP------ 221 (339)
T ss_pred ccee-eeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecce-eeecceEEEecCCC------
Confidence 4432 234445678888889989997644 788999999999999999 4444443 34 67888888888873
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
.+.++++|+.|-.|++||.++-.
T Consensus 222 -----------------------------~~~~I~TGsYDe~i~~~DtRnm~---------------------------- 244 (339)
T KOG0280|consen 222 -----------------------------KPTYIATGSYDECIRVLDTRNMG---------------------------- 244 (339)
T ss_pred -----------------------------CCceEEEeccccceeeeehhccc----------------------------
Confidence 67899999999999999999621
Q ss_pred eeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEE
Q 018858 244 EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNW 323 (349)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 323 (349)
+++..-. -.+.|..+..+|.. .++.|+++-.+| .+|-+.+...... ...+.....|.+-...
T Consensus 245 -----------kPl~~~~-v~GGVWRi~~~p~~-~~~lL~~CMh~G-~ki~~~~~~~~e~----~~~~~s~~~hdSl~YG 306 (339)
T KOG0280|consen 245 -----------KPLFKAK-VGGGVWRIKHHPEI-FHRLLAACMHNG-AKILDSSDKVLEF----QIVLPSDKIHDSLCYG 306 (339)
T ss_pred -----------CccccCc-cccceEEEEecchh-hhHHHHHHHhcC-ceEEEecccccch----heeeeccccccceeec
Confidence 2221111 23789999998632 233444444444 6677776653321 0244455667777777
Q ss_pred EEeecCCCCcEEEee-CCCeEE-Ee
Q 018858 324 LCTTPTESENLVVCD-TSKVVK-VY 346 (349)
Q Consensus 324 ~~~~~~~~~~l~~~~-~dg~i~-iw 346 (349)
-.|...++ .|+||+ .|..++ +|
T Consensus 307 ~DWd~~~~-~lATCsFYDk~~~~~W 330 (339)
T KOG0280|consen 307 GDWDSKDS-FLATCSFYDKKIRQLW 330 (339)
T ss_pred cccccccc-eeeeeeccccceeeee
Confidence 77865433 788886 677755 77
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.6e-11 Score=102.05 Aligned_cols=111 Identities=14% Similarity=0.185 Sum_probs=76.0
Q ss_pred cEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCC---CeEEEEEccCCCcccceeeccCcccceEEEEEccCC
Q 018858 39 CICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG---KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS 115 (349)
Q Consensus 39 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 115 (349)
.|.++|.+.+.. ..+..+...+....|+|+|+.|+..+.+ ..|.+|++.+++. +.+... .+......|+|+|
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~-~~l~~~---~g~~~~~~~SpDG 254 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR-EQITNF---EGLNGAPAWSPDG 254 (430)
T ss_pred EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE-EEccCC---CCCcCCeEECCCC
Confidence 477788775543 4455567788999999999999887644 3799999987643 223322 2345568999999
Q ss_pred CEEEE-EcCCC--cEEEEEcCCceEeceeccccccceeEEEEcc
Q 018858 116 SFLAC-ADDGG--DVKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 116 ~~l~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
+.|+. ...+| .|+++|+.+++.. .+. .+........|+|
T Consensus 255 ~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt-~~~~~~~~~~~sp 296 (430)
T PRK00178 255 SKLAFVLSKDGNPEIYVMDLASRQLS-RVT-NHPAIDTEPFWGK 296 (430)
T ss_pred CEEEEEEccCCCceEEEEECCCCCeE-Ecc-cCCCCcCCeEECC
Confidence 88874 44444 5888899877653 333 3444556678888
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.8e-10 Score=87.60 Aligned_cols=256 Identities=13% Similarity=0.171 Sum_probs=163.6
Q ss_pred CCceeeeEEEEecCCCceEEEeCC---CCcEEEEECCC--CcEE--EEeecCCCCeEEEEEecCCCEEEEEeC-CCeEEE
Q 018858 13 GHKATATCCIASRDRPGFVASSGE---DGCICWFDLRS--KDVQ--LVTDVGNGPVTSLCFKSGNEDIIYVSS-GKEVKS 84 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~t~~~---dg~i~vwd~~~--~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i 84 (349)
.+.+..+=++|+|+ ++.|+++.. +|.|..|.++. |++. ........+.+.+++++++++++++.. .|.|.+
T Consensus 37 ~~~~nptyl~~~~~-~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v 115 (346)
T COG2706 37 AELGNPTYLAVNPD-QRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSV 115 (346)
T ss_pred cccCCCceEEECCC-CCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEE
Confidence 35566778999998 788888754 47788777764 5542 222223344588999999999999986 479999
Q ss_pred EEccCCCcccceeeccCcccc----------eEEEEEccCCCEEEEEcC-CCcEEEEEcCCceEecee--ccccccceeE
Q 018858 85 FDVHMPASWRPLESYNYNKEE----------INQIVCNPKSSFLACADD-GGDVKIIDIRQHCLYKSL--RAGHSSICSS 151 (349)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~--~~~~~~~v~~ 151 (349)
+-++.............|.+. +.+..+.|+++++++..- -..|.+|++..++....- ........+.
T Consensus 116 ~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRH 195 (346)
T COG2706 116 YPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRH 195 (346)
T ss_pred EEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcce
Confidence 998763223332222223333 778899999999887653 236999999977543211 1124566788
Q ss_pred EEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEc-CCCeEEEEEccCceeeeecCCCCCCccce
Q 018858 152 VQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESELNISRSKSTTKPLKGS 230 (349)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 230 (349)
|.|+| ++++..+.+ -+++|.+|........
T Consensus 196 i~FHp------------------------------------n~k~aY~v~EL~stV~v~~y~~~~g~------------- 226 (346)
T COG2706 196 IVFHP------------------------------------NGKYAYLVNELNSTVDVLEYNPAVGK------------- 226 (346)
T ss_pred EEEcC------------------------------------CCcEEEEEeccCCEEEEEEEcCCCce-------------
Confidence 99999 677765544 6899999999863100
Q ss_pred eeeeccccEEEEeeeeeecCceeeeeee----eecCCCcceEEEEEeeecCCccEEEEeeC-CCeEEEEecCCCcceecc
Q 018858 231 QSTSKVNIRDAEMEILDQSGGKRLHLDY----SVGGHTAAASCVAFSMFGERGKYLISGGN-DKLVKVWDCSRFQGVQTS 305 (349)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~h~~~i~~i~~~~~~~~~~~l~s~~~-d~~i~vwd~~~~~~~~~~ 305 (349)
....+.+. .+.+ ......|.++ +||++|.++.. ...|.+|.+.......
T Consensus 227 --------------------~~~lQ~i~tlP~dF~g-~~~~aaIhis---~dGrFLYasNRg~dsI~~f~V~~~~g~L-- 280 (346)
T COG2706 227 --------------------FEELQTIDTLPEDFTG-TNWAAAIHIS---PDGRFLYASNRGHDSIAVFSVDPDGGKL-- 280 (346)
T ss_pred --------------------EEEeeeeccCccccCC-CCceeEEEEC---CCCCEEEEecCCCCeEEEEEEcCCCCEE--
Confidence 00011111 1222 2345678888 89999988752 3478888876643211
Q ss_pred cccceeeeccccccceEEEEeecCCCCcEEEeeCC-CeEEEeeC
Q 018858 306 INNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS-KVVKVYSI 348 (349)
Q Consensus 306 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~iw~~ 348 (349)
..+.....+........+++ .+++|+++..+ ..|.+|.+
T Consensus 281 ---~~~~~~~teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~ 320 (346)
T COG2706 281 ---ELVGITPTEGQFPRDFNINP-SGRFLIAANQKSDNITVFER 320 (346)
T ss_pred ---EEEEEeccCCcCCccceeCC-CCCEEEEEccCCCcEEEEEE
Confidence 23333333444567778877 77888888743 56777754
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.8e-12 Score=105.81 Aligned_cols=200 Identities=9% Similarity=0.068 Sum_probs=145.5
Q ss_pred EEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceee-
Q 018858 20 CCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLES- 98 (349)
Q Consensus 20 ~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~- 98 (349)
.++++..... |+.++....|+-++++.|+-+..+....+++.++..++...+|++|+.+|.|..||.++......+..
T Consensus 138 Dm~y~~~scD-ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~ 216 (703)
T KOG2321|consen 138 DMKYHKPSCD-LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAA 216 (703)
T ss_pred cccccCCCcc-EEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecc
Confidence 3444433233 44444445788999999999888888889999999999999999999999999999987544433322
Q ss_pred --ccCcc-----cceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCc
Q 018858 99 --YNYNK-----EEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAG 171 (349)
Q Consensus 99 --~~~~~-----~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 171 (349)
...+. ..|+++.|+.+|-.+++|+.+|.+.|||++..+++..-.....-+|..+.|.+.
T Consensus 217 ~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~-------------- 282 (703)
T KOG2321|consen 217 SSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDT-------------- 282 (703)
T ss_pred cccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeeccccc--------------
Confidence 11122 249999999999999999999999999999888876655344567888888772
Q ss_pred cccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCc
Q 018858 172 QCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG 251 (349)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (349)
.+++.+++ .....++|||-.+++
T Consensus 283 --------------------~~q~~v~S-~Dk~~~kiWd~~~Gk------------------------------------ 305 (703)
T KOG2321|consen 283 --------------------DQQNKVVS-MDKRILKIWDECTGK------------------------------------ 305 (703)
T ss_pred --------------------CCCceEEe-cchHHhhhcccccCC------------------------------------
Confidence 02444544 345789999988752
Q ss_pred eeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCC
Q 018858 252 KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 252 ~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 299 (349)
....+. ....++.+++- |++.+++++-++..+..|=++..
T Consensus 306 ----~~asiE-pt~~lND~C~~---p~sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 306 ----PMASIE-PTSDLNDFCFV---PGSGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred ----ceeecc-ccCCcCceeee---cCCceEEEecCCCcceeEEcccc
Confidence 222222 23447888887 78889999988888877776654
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.6e-13 Score=109.36 Aligned_cols=209 Identities=13% Similarity=0.176 Sum_probs=145.5
Q ss_pred CCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCC-------CcEEEEeecCCCCeEEEEEecCCCEEEEEeCC
Q 018858 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRS-------KDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG 79 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 79 (349)
.++.+.||+..|..++.-.+ .+-+++++.|.++++|.++. ..+..+++.|..+|..+.|-.+.+++++ .|
T Consensus 727 rL~nf~GH~~~iRai~AidN-ENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD 803 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDN-ENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CD 803 (1034)
T ss_pred eeecccCcHHHhHHHHhccc-ccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--cc
Confidence 45677899999999887665 78899999999999999863 2256788899999999999988877765 47
Q ss_pred CeEEEEEccCCCcccceeeccCcccceEEEEEcc--CCCEEEEE-cCCCcEEEEEcCCceEeceec----cccccceeEE
Q 018858 80 KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNP--KSSFLACA-DDGGDVKIIDIRQHCLYKSLR----AGHSSICSSV 152 (349)
Q Consensus 80 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~----~~~~~~v~~~ 152 (349)
|.|++||.-.+.....+...+.+ +.+..+..-| +...+..| +...+|+++|.+.++-..+++ .+.+..++++
T Consensus 804 ~giHlWDPFigr~Laq~~dapk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~i 882 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAI 882 (1034)
T ss_pred CcceeecccccchhHhhhcCccc-CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEE
Confidence 88999997755433322222222 2333333333 33444444 678899999999876555544 1345567788
Q ss_pred EEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceee
Q 018858 153 QFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQS 232 (349)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 232 (349)
+..| .|+.++.+-..|.|.+.|.++++.
T Consensus 883 aVa~------------------------------------~GN~lAa~LSnGci~~LDaR~G~v---------------- 910 (1034)
T KOG4190|consen 883 AVAD------------------------------------KGNKLAAALSNGCIAILDARNGKV---------------- 910 (1034)
T ss_pred Eecc------------------------------------CcchhhHHhcCCcEEEEecCCCce----------------
Confidence 8877 799999999999999999998632
Q ss_pred eeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEE-EecCCC
Q 018858 233 TSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKV-WDCSRF 299 (349)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~v-wd~~~~ 299 (349)
+...+.-+.....++- |..+.|+....|..+.| |..-.+
T Consensus 911 ------------------------INswrpmecdllqlaa----psdq~L~~saldHslaVnWhaldg 950 (1034)
T KOG4190|consen 911 ------------------------INSWRPMECDLLQLAA----PSDQALAQSALDHSLAVNWHALDG 950 (1034)
T ss_pred ------------------------eccCCcccchhhhhcC----chhHHHHhhcccceeEeeehhcCC
Confidence 2222222223333432 56677887778888888 876654
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.5e-10 Score=91.78 Aligned_cols=174 Identities=10% Similarity=0.038 Sum_probs=128.8
Q ss_pred EecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCC-eEEEEEccCCCcccceeeccC
Q 018858 23 ASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGK-EVKSFDVHMPASWRPLESYNY 101 (349)
Q Consensus 23 ~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~ 101 (349)
|++-+|++++..+. |...+.+...+-.++ -++.+.|.-..+.-+++-++.|..|| .+-|+|.++++..+...
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~---- 399 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK---- 399 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC----
Confidence 44445778887775 677777655444333 24667788888888888899999998 89999999764332222
Q ss_pred cccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEE
Q 018858 102 NKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHA 181 (349)
Q Consensus 102 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (349)
.-+.|.++..+|+|++++.+.....|.+.|+.++++...-+ ...+.|+.+.|+|
T Consensus 400 ~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idk-S~~~lItdf~~~~------------------------- 453 (668)
T COG4946 400 DLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDK-SEYGLITDFDWHP------------------------- 453 (668)
T ss_pred CccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecc-cccceeEEEEEcC-------------------------
Confidence 34789999999999999999999999999999998755545 6678899999999
Q ss_pred eecCcccccCCCCcEEEEEcCCC----eEEEEEccCceeeeecCCCCCCccceeeeeccccEEEE
Q 018858 182 IAIPDADMLDKTNKICVVAKGDG----VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE 242 (349)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (349)
+++.+|-+--+| .|++||+.+++....... ...-.+.+|.||+++|..
T Consensus 454 -----------nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~--ta~DfsPaFD~d~ryLYf 505 (668)
T COG4946 454 -----------NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP--TAYDFSPAFDPDGRYLYF 505 (668)
T ss_pred -----------CceeEEEecCcceeeeeEEEEecCCCeEEEecCC--cccccCcccCCCCcEEEE
Confidence 677777666554 689999987654432221 233456788999998875
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1e-12 Score=121.47 Aligned_cols=213 Identities=16% Similarity=0.141 Sum_probs=157.5
Q ss_pred EEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEE
Q 018858 31 VASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIV 110 (349)
Q Consensus 31 l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 110 (349)
+.....++...-|..+... ..++.+-..|.++.-+|...+.++|+.||.+++|....++.+....+.- ...|+.+.
T Consensus 2183 ~~~~n~~~~~~tq~~~~~~--~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g--~s~vtr~~ 2258 (2439)
T KOG1064|consen 2183 FTPSNLPWLGSTQTSRGAS--VMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAG--NSRVTRSR 2258 (2439)
T ss_pred CCcccCCccccceecccce--eEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccC--cchhhhhh
Confidence 3333344444445443222 1234455678888888999999999999999999998776655555442 37899999
Q ss_pred EccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCccccc
Q 018858 111 CNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADML 190 (349)
Q Consensus 111 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (349)
|+.+|+.+..+..||.+.+|... .++....+ .|+.....+.|-.
T Consensus 2259 f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~q-chnk~~~Df~Fi~---------------------------------- 2302 (2439)
T KOG1064|consen 2259 FNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQ-CHNKALSDFRFIG---------------------------------- 2302 (2439)
T ss_pred hcccCCceeeeccCCceeecccC-Ccceeccc-cCCccccceeeee----------------------------------
Confidence 99999999999999999999986 56666677 7888888888753
Q ss_pred CCCCcEEEEEc---CCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcce
Q 018858 191 DKTNKICVVAK---GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAA 267 (349)
Q Consensus 191 ~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i 267 (349)
..+++++ .++.+.+||.... ....++. ..|.+.+
T Consensus 2303 ----s~~~tag~s~d~~n~~lwDtl~~-------------------------------------~~~s~v~--~~H~~ga 2339 (2439)
T KOG1064|consen 2303 ----SLLATAGRSSDNRNVCLWDTLLP-------------------------------------PMNSLVH--TCHDGGA 2339 (2439)
T ss_pred ----hhhhccccCCCCCcccchhcccC-------------------------------------cccceee--eecCCCc
Confidence 4455554 5678999997642 1112333 7899999
Q ss_pred EEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 268 SCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 268 ~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
+++++. |..+.|++||.+|.|++||++.. ++...+.. +. ...++++++..|.++||+
T Consensus 2340 T~l~~~---P~~qllisggr~G~v~l~D~rqr---------ql~h~~~~---------~~--~~~~f~~~ss~g~ikIw~ 2396 (2439)
T KOG1064|consen 2340 TVLAYA---PKHQLLISGGRKGEVCLFDIRQR---------QLRHTFQA---------LD--TREYFVTGSSEGNIKIWR 2396 (2439)
T ss_pred eEEEEc---CcceEEEecCCcCcEEEeehHHH---------HHHHHhhh---------hh--hhheeeccCcccceEEEE
Confidence 999999 89999999999999999999986 34333332 32 334899999999999999
Q ss_pred CC
Q 018858 348 IS 349 (349)
Q Consensus 348 ~~ 349 (349)
++
T Consensus 2397 ~s 2398 (2439)
T KOG1064|consen 2397 LS 2398 (2439)
T ss_pred cc
Confidence 74
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.2e-09 Score=87.50 Aligned_cols=103 Identities=15% Similarity=0.055 Sum_probs=78.8
Q ss_pred CcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeC----------CCeEEEEEccCCCcccceeeccC----cc
Q 018858 38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS----------GKEVKSFDVHMPASWRPLESYNY----NK 103 (349)
Q Consensus 38 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~----~~ 103 (349)
++|.+.|..+++.+..+.....+- .+ ++|+++.|+++.. +..|.+||..+.+....+..-.. ..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 899999999999988888654443 34 9999999887765 68999999998765544443111 01
Q ss_pred cceEEEEEccCCCEEEEEc-C-CCcEEEEEcCCceEeceec
Q 018858 104 EEINQIVCNPKSSFLACAD-D-GGDVKIIDIRQHCLYKSLR 142 (349)
Q Consensus 104 ~~v~~~~~~~~~~~l~~~~-~-dg~i~i~d~~~~~~~~~~~ 142 (349)
.....++++|+|+++++.. . +..|.+.|+.+++.+.++.
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~ 145 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMD 145 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEe
Confidence 2334789999999998776 3 6889999999999988877
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.6e-10 Score=97.39 Aligned_cols=218 Identities=13% Similarity=0.091 Sum_probs=126.7
Q ss_pred CcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEE--E-EEeCC--CeEEEEEccCCCcccceeeccCcccceEEEEEc
Q 018858 38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDI--I-YVSSG--KEVKSFDVHMPASWRPLESYNYNKEEINQIVCN 112 (349)
Q Consensus 38 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l--~-~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 112 (349)
..|.+.|.+.+.. ..+.........-+|+|+|+.+ + +...+ ..|.+.++..++. ..+..+. ......+|+
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~-~~lt~~~---g~~~~p~wS 239 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG-KKILALQ---GNQLMPTFS 239 (428)
T ss_pred ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc-eEeecCC---CCccceEEC
Confidence 4677778765544 3344455667788999999863 2 33333 3688888886643 3444443 344568999
Q ss_pred cCCCEEEEEcC-CC--c--EEEEEcCCc---eEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeec
Q 018858 113 PKSSFLACADD-GG--D--VKIIDIRQH---CLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAI 184 (349)
Q Consensus 113 ~~~~~l~~~~~-dg--~--i~i~d~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (349)
|||+.|+..+. +| . +..|++..+ +...... .........+|+|
T Consensus 240 PDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~-~~~~~~~~p~wSP---------------------------- 290 (428)
T PRK01029 240 PRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLN-EAFGTQGNPSFSP---------------------------- 290 (428)
T ss_pred CCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeec-CCCCCcCCeEECC----------------------------
Confidence 99988876543 23 2 344676542 2222222 2223345678888
Q ss_pred CcccccCCCCcEEEEEc-CCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCC
Q 018858 185 PDADMLDKTNKICVVAK-GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGH 263 (349)
Q Consensus 185 ~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 263 (349)
+|+.|+..+ .+|...+|.+.... . ......+..+
T Consensus 291 --------DG~~Laf~s~~~g~~~ly~~~~~~-----------------------------------~--g~~~~~lt~~ 325 (428)
T PRK01029 291 --------DGTRLVFVSNKDGRPRIYIMQIDP-----------------------------------E--GQSPRLLTKK 325 (428)
T ss_pred --------CCCEEEEEECCCCCceEEEEECcc-----------------------------------c--ccceEEeccC
Confidence 788766554 56655555432100 0 0111223333
Q ss_pred CcceEEEEEeeecCCccEEEEeeCC---CeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEee-C
Q 018858 264 TAAASCVAFSMFGERGKYLISGGND---KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD-T 339 (349)
Q Consensus 264 ~~~i~~i~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~ 339 (349)
...+....|+ |||++|+..+.+ ..|++||+.+++. . .+......+....|+| ||+.|+..+ .
T Consensus 326 ~~~~~~p~wS---PDG~~Laf~~~~~g~~~I~v~dl~~g~~---------~-~Lt~~~~~~~~p~wSp-DG~~L~f~~~~ 391 (428)
T PRK01029 326 YRNSSCPAWS---PDGKKIAFCSVIKGVRQICVYDLATGRD---------Y-QLTTSPENKESPSWAI-DSLHLVYSAGN 391 (428)
T ss_pred CCCccceeEC---CCCCEEEEEEcCCCCcEEEEEECCCCCe---------E-EccCCCCCccceEECC-CCCEEEEEECC
Confidence 3456678899 899988866543 4699999988732 2 2222223456678987 777766543 2
Q ss_pred --CCeEEEeeC
Q 018858 340 --SKVVKVYSI 348 (349)
Q Consensus 340 --dg~i~iw~~ 348 (349)
...|++|++
T Consensus 392 ~g~~~L~~vdl 402 (428)
T PRK01029 392 SNESELYLISL 402 (428)
T ss_pred CCCceEEEEEC
Confidence 356777775
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1e-09 Score=101.36 Aligned_cols=290 Identities=9% Similarity=0.042 Sum_probs=175.6
Q ss_pred ceeeeEEEEecCCCceEEEeCCCCcEEEE----ECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccC-
Q 018858 15 KATATCCIASRDRPGFVASSGEDGCICWF----DLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM- 89 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~dg~i~vw----d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~- 89 (349)
.+.|.++.+.++ ...++.+..+|.|.+. +..+.. +...-.-...|.+++||||++.|+.++.++++.+.+-.-
T Consensus 75 ~~~ivs~~yl~d-~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd 152 (928)
T PF04762_consen 75 NDKIVSFQYLAD-SESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFD 152 (928)
T ss_pred CCcEEEEEeccC-CCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccce
Confidence 467999999998 6778888888999999 544333 222233457899999999999999999888887654210
Q ss_pred ------------CC------------------cccc---------e-----eeccCcccceEEEEEccCCCEEEEEcC--
Q 018858 90 ------------PA------------------SWRP---------L-----ESYNYNKEEINQIVCNPKSSFLACADD-- 123 (349)
Q Consensus 90 ------------~~------------------~~~~---------~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~-- 123 (349)
+. ..+. + ..+. ....-..++|-.||.+||+.+.
T Consensus 153 ~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~ 231 (928)
T PF04762_consen 153 PISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEP 231 (928)
T ss_pred EEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEc
Confidence 00 0000 0 0011 2334567899999999998764
Q ss_pred -C---CcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEE
Q 018858 124 -G---GDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV 199 (349)
Q Consensus 124 -d---g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (349)
. ..++||+- .|....... .-.+--.+++|.| .|+++|+
T Consensus 232 ~~~~~R~iRVy~R-eG~L~stSE-~v~gLe~~l~WrP------------------------------------sG~lIA~ 273 (928)
T PF04762_consen 232 ETGSRRVIRVYSR-EGELQSTSE-PVDGLEGALSWRP------------------------------------SGNLIAS 273 (928)
T ss_pred CCCceeEEEEECC-CceEEeccc-cCCCccCCccCCC------------------------------------CCCEEEE
Confidence 3 46999994 465544433 3344445678888 7888887
Q ss_pred EcC---CCeEEEEEccCceeeee-cC-CCCCCccceeeeeccccEEEEeeeeeecC----ceeeeeeeeecC-CCcceEE
Q 018858 200 AKG---DGVVDVINIESELNISR-SK-STTKPLKGSQSTSKVNIRDAEMEILDQSG----GKRLHLDYSVGG-HTAAASC 269 (349)
Q Consensus 200 ~~~---dg~i~i~d~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-h~~~i~~ 269 (349)
.-. ...|.+|.-+..+.-.. .. .+....+..+.|++|+..||+.-...... ...+.+.+.+.- ....+..
T Consensus 274 ~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~ 353 (928)
T PF04762_consen 274 SQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNF 353 (928)
T ss_pred EEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCc
Confidence 653 34566676554333221 11 24566789999999999999633111111 112223333332 1233455
Q ss_pred EEEeeecCCccEEEEeeCCCeEEEEecC----CCcc--------eecc--------------cccceeeeccccccceEE
Q 018858 270 VAFSMFGERGKYLISGGNDKLVKVWDCS----RFQG--------VQTS--------------INNDLLIKNINLNKKVNW 323 (349)
Q Consensus 270 i~~~~~~~~~~~l~s~~~d~~i~vwd~~----~~~~--------~~~~--------------~~~~~~~~~~~~~~~v~~ 323 (349)
+.|+| .+...|.....+|.+..++.. .... .... -+++...........|+.
T Consensus 354 ~~Wdp--e~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~ 431 (928)
T PF04762_consen 354 VKWDP--EKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVND 431 (928)
T ss_pred eEECC--CCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEE
Confidence 88985 344456666655666555432 2111 0000 011111222345678999
Q ss_pred EEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 324 LCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 324 ~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
++|++ ++..+++...||.|.+|..
T Consensus 432 vaf~~-~~~~~avl~~d~~l~~~~~ 455 (928)
T PF04762_consen 432 VAFSP-SNSRFAVLTSDGSLSIYEW 455 (928)
T ss_pred EEEeC-CCCeEEEEECCCCEEEEEe
Confidence 99988 4445899999999999874
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.5e-11 Score=91.80 Aligned_cols=246 Identities=8% Similarity=-0.035 Sum_probs=145.0
Q ss_pred eeEEEEecCCCceEEEeCCCCcEEEEECCCCc------------EEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 018858 18 ATCCIASRDRPGFVASSGEDGCICWFDLRSKD------------VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 18 i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 85 (349)
|+.+.+.-+ ..|+++..++.+.......+. +.+.+..|.++-.+-+.+--+..++++..||.+.++
T Consensus 39 ~~~~~~v~~--~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~ 116 (319)
T KOG4714|consen 39 LSKVSLSAE--YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVF 116 (319)
T ss_pred EEEeechhh--heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEE
Confidence 666666654 578888777776666543222 233344444433333333346679999999999999
Q ss_pred EccCCCcccceeeccCcccceEEEEEccCCCEEEEEcC-----CCcEEEEEcCCceEeceeccccccceeEEEEccCCCC
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-----GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPW 160 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 160 (349)
+.+.. .............--+.+....+.++.++.- -+..+.|+++..+.+..-+ .....|.+++-+|.
T Consensus 117 s~~~~--~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~-~~~~~v~~l~~hp~--- 190 (319)
T KOG4714|consen 117 STDKD--LALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK-KALDAVTALCSHPA--- 190 (319)
T ss_pred echHH--HhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccc-cccccchhhhCCcc---
Confidence 98741 1111111111111112222333444443321 1345666665443322222 22334777777773
Q ss_pred CCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEE
Q 018858 161 EGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRD 240 (349)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (349)
..+.+++|+.||.+-+||.+...
T Consensus 191 --------------------------------qq~~v~cgt~dg~~~l~d~rn~~------------------------- 213 (319)
T KOG4714|consen 191 --------------------------------QQHLVCCGTDDGIVGLWDARNVA------------------------- 213 (319)
T ss_pred --------------------------------cccEEEEecCCCeEEEEEccccc-------------------------
Confidence 56788899999999999999731
Q ss_pred EEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCccee----c-------cccc-
Q 018858 241 AEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ----T-------SINN- 308 (349)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~----~-------~~~~- 308 (349)
.+...+..|+.+|+.+-|+| .++..|+++++||.+.-||..+..... . ..+.
T Consensus 214 --------------~p~S~l~ahk~~i~eV~FHp--k~p~~Lft~sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~ 277 (319)
T KOG4714|consen 214 --------------MPVSLLKAHKAEIWEVHFHP--KNPEHLFTCSEDGSLWHWDASTTFLSISNQASVISSWLSGDPVK 277 (319)
T ss_pred --------------chHHHHHHhhhhhhheeccC--CCchheeEecCCCcEEEEcCCCceEEecCccccccccccCCccc
Confidence 44566788999999999998 678899999999999999988521100 0 0000
Q ss_pred cee---eeccccccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 309 DLL---IKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 309 ~~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
..+ .....-...|+++.. -|..|++|++-+.|++.+
T Consensus 278 s~i~i~~ll~~~~~SinsfDV---~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 278 SRIEITSLLPSRSLSINSFDV---LGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred ceEeeeccccccceeeeeeec---cCceEEeccccceEEEec
Confidence 001 011112234565555 344799999999999875
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.8e-10 Score=95.06 Aligned_cols=229 Identities=16% Similarity=0.219 Sum_probs=149.4
Q ss_pred eEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCC--EEEE-----EeCCCeEEEEEccCCC
Q 018858 19 TCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNE--DIIY-----VSSGKEVKSFDVHMPA 91 (349)
Q Consensus 19 ~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~-----~~~dg~i~iwd~~~~~ 91 (349)
++..|++| .. ++.--..+.+.+|++.+-+.+. -.-|...+..+.++|.+. .+|+ .+.-+.|+||......
T Consensus 129 W~~qfs~d-Es-l~arlv~nev~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~ 205 (566)
T KOG2315|consen 129 WVPQFSID-ES-LAARLVSNEVQFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEG 205 (566)
T ss_pred cccccccc-hh-hhhhhhcceEEEEecCCcccee-eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccc
Confidence 57788887 33 3333334679999987744322 233678899999998643 3443 2334689999876322
Q ss_pred cccce--eeccCcccceEEEEEccCCC-EEEEE--cCC---------CcEEEEEcCCceEeceeccccccceeEEEEccC
Q 018858 92 SWRPL--ESYNYNKEEINQIVCNPKSS-FLACA--DDG---------GDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPW 157 (349)
Q Consensus 92 ~~~~~--~~~~~~~~~v~~~~~~~~~~-~l~~~--~~d---------g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 157 (349)
....+ +.+. ...-..+.|++.+. +|+.. .-| ..+++.++....+.-.+. ..++|.++.|+|
T Consensus 206 ~~~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~--k~GPVhdv~W~~- 280 (566)
T KOG2315|consen 206 QHQPVANKSFF--KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL--KEGPVHDVTWSP- 280 (566)
T ss_pred ccchhhhcccc--ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC--CCCCceEEEECC-
Confidence 22222 1221 12233578888764 33322 223 358888887444444443 578999999999
Q ss_pred CCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEE--EcCCCeEEEEEccCceeeeecCCCCCCccceeeeec
Q 018858 158 KPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV--AKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSK 235 (349)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (349)
+++.|++ |-.-..+.|||++.
T Consensus 281 -----------------------------------s~~EF~VvyGfMPAkvtifnlr~---------------------- 303 (566)
T KOG2315|consen 281 -----------------------------------SGREFAVVYGFMPAKVTIFNLRG---------------------- 303 (566)
T ss_pred -----------------------------------CCCEEEEEEecccceEEEEcCCC----------------------
Confidence 6766654 44567899999996
Q ss_pred cccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCC---CeEEEEecCCCcceecccccceee
Q 018858 236 VNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND---KLVKVWDCSRFQGVQTSINNDLLI 312 (349)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~~ 312 (349)
.++..+. .++-+++.|+ |.|++++.+|-+ |.|-|||+.+. +.+.
T Consensus 304 -------------------~~v~df~--egpRN~~~fn---p~g~ii~lAGFGNL~G~mEvwDv~n~---------K~i~ 350 (566)
T KOG2315|consen 304 -------------------KPVFDFP--EGPRNTAFFN---PHGNIILLAGFGNLPGDMEVWDVPNR---------KLIA 350 (566)
T ss_pred -------------------CEeEeCC--CCCccceEEC---CCCCEEEEeecCCCCCceEEEeccch---------hhcc
Confidence 4555554 5677899999 899999888744 88999999996 4444
Q ss_pred eccccccceEEEEeecCCCCcEEEeeC------CCeEEEeeC
Q 018858 313 KNINLNKKVNWLCTTPTESENLVVCDT------SKVVKVYSI 348 (349)
Q Consensus 313 ~~~~~~~~v~~~~~~~~~~~~l~~~~~------dg~i~iw~~ 348 (349)
.+..- .-+-+.|+| ||++++|++. |+.++||+.
T Consensus 351 ~~~a~--~tt~~eW~P-dGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 351 KFKAA--NTTVFEWSP-DGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred ccccC--CceEEEEcC-CCcEEEEEeccccEEecCCeEEEEe
Confidence 44333 234457988 9999999863 788999985
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.9e-10 Score=97.05 Aligned_cols=111 Identities=17% Similarity=0.218 Sum_probs=74.8
Q ss_pred cEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCC---CeEEEEEccCCCcccceeeccCcccceEEEEEccCC
Q 018858 39 CICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG---KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS 115 (349)
Q Consensus 39 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 115 (349)
.|.++|...... ..+..+...+....|+|+|+.|+..+.+ ..|.+||+.+++. ..+.... ......+|+|++
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~-~~lt~~~---g~~~~~~wSPDG 273 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR-EKVTSFP---GINGAPRFSPDG 273 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe-EEecCCC---CCcCCeeECCCC
Confidence 577778765443 3445567788899999999999887643 3688899887643 2333332 334468999999
Q ss_pred CEEEE-EcCCCc--EEEEEcCCceEeceeccccccceeEEEEcc
Q 018858 116 SFLAC-ADDGGD--VKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 116 ~~l~~-~~~dg~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
+.|+. .+.+|. |+++|+.+++.. .+. .+.......+|+|
T Consensus 274 ~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt-~~~~~~~~p~wSp 315 (448)
T PRK04792 274 KKLALVLSKDGQPEIYVVDIATKALT-RIT-RHRAIDTEPSWHP 315 (448)
T ss_pred CEEEEEEeCCCCeEEEEEECCCCCeE-ECc-cCCCCccceEECC
Confidence 98765 455664 888898877653 333 3444566788888
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.9e-09 Score=100.19 Aligned_cols=283 Identities=9% Similarity=0.031 Sum_probs=155.0
Q ss_pred eEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeec-C-------------CCCeEEEEEecCCCEEEEEe-CCCeEE
Q 018858 19 TCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDV-G-------------NGPVTSLCFKSGNEDIIYVS-SGKEVK 83 (349)
Q Consensus 19 ~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~-~-------------~~~v~~~~~~~~~~~l~~~~-~dg~i~ 83 (349)
..+++++.++.++++-..++.|+++|.. ++.+..+.. . -.....+++.++++.|+++. ..+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 3578887656778887888999999976 444433322 1 12357899999888766655 457899
Q ss_pred EEEccCCCcccceee-------ccCc-------ccceEEEEEcc-CCCEEEEEcCCCcEEEEEcCCceEeceeccccccc
Q 018858 84 SFDVHMPASWRPLES-------YNYN-------KEEINQIVCNP-KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSI 148 (349)
Q Consensus 84 iwd~~~~~~~~~~~~-------~~~~-------~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 148 (349)
++|+.++. ...+.. ..+. -.....++++| ++..+++...++.|++||..++... .+. +....
T Consensus 650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~-G~G~~ 726 (1057)
T PLN02919 650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFS-GDGYE 726 (1057)
T ss_pred EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEe-cCCcc
Confidence 99987542 222211 0000 12346899999 4566677778889999998776542 221 11000
Q ss_pred eeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCc-EEEEEcCCCeEEEEEccCceeeeecCCCCCCc
Q 018858 149 CSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK-ICVVAKGDGVVDVINIESELNISRSKSTTKPL 227 (349)
Q Consensus 149 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 227 (349)
. .... .............++++| +++ ++++-..++.|++||+.++...........
T Consensus 727 ~---~~~g------------~~~~~~~~~~P~GIavsp------dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~-- 783 (1057)
T PLN02919 727 R---NLNG------------SSGTSTSFAQPSGISLSP------DLKELYIADSESSSIRALDLKTGGSRLLAGGDPT-- 783 (1057)
T ss_pred c---cCCC------------CccccccccCccEEEEeC------CCCEEEEEECCCCeEEEEECCCCcEEEEEecccc--
Confidence 0 0000 000000011234455554 676 455556779999999986432110000000
Q ss_pred cceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccc
Q 018858 228 KGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSIN 307 (349)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~ 307 (349)
.++. +...+..++. .. ...-.....++++ ++|+++++-+.++.|++||..++........
T Consensus 784 ------~~~~--l~~fG~~dG~-----g~----~~~l~~P~Gvavd---~dG~LYVADs~N~rIrviD~~tg~v~tiaG~ 843 (1057)
T PLN02919 784 ------FSDN--LFKFGDHDGV-----GS----EVLLQHPLGVLCA---KDGQIYVADSYNHKIKKLDPATKRVTTLAGT 843 (1057)
T ss_pred ------cCcc--cccccCCCCc-----hh----hhhccCCceeeEe---CCCcEEEEECCCCEEEEEECCCCeEEEEecc
Confidence 0000 0000000000 00 0011234688898 8999888888999999999987632211000
Q ss_pred ccee----eeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 308 NDLL----IKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 308 ~~~~----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
...- ....+.-.....+++.+ +|+++++-+.++.|++||++
T Consensus 844 G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 844 GKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLDLN 888 (1057)
T ss_pred CCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEECC
Confidence 0000 00111223577889977 78877777899999999974
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-10 Score=98.92 Aligned_cols=276 Identities=12% Similarity=0.102 Sum_probs=178.3
Q ss_pred ceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc---------------EEEEeecCCCCeEEEEEecCCCEEEEEeCC
Q 018858 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKD---------------VQLVTDVGNGPVTSLCFKSGNEDIIYVSSG 79 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 79 (349)
.....|++|+.. ..+++.|+.||.+++-.+.+.. .-+++.+|+..|..+.|+.+.+.|-+...+
T Consensus 14 nvkL~c~~WNke-~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 14 NVKLHCAEWNKE-SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CceEEEEEEccc-CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 456889999998 8899999999999999876421 124678999999999999999999999999
Q ss_pred CeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEe-ceeccccccceeEEEEccCC
Q 018858 80 KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLY-KSLRAGHSSICSSVQFIPWK 158 (349)
Q Consensus 80 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~ 158 (349)
|.|.+|-+-.+.-...+.. ...++-|.+++|+.+|..++....||.|.+=.+...+.. +.++ ......+.|++
T Consensus 93 GlIiVWmlykgsW~EEMiN-nRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLk---g~~l~hv~ws~-- 166 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMIN-NRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELK---GQLLAHVLWSE-- 166 (1189)
T ss_pred ceEEEEeeecccHHHHHhh-CcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcc---hheccceeecc--
Confidence 9999999876643332222 224567899999999999999999999988776644332 1222 22345678888
Q ss_pred CCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeec----------CCCCCCcc
Q 018858 159 PWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS----------KSTTKPLK 228 (349)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----------~~~~~~~~ 228 (349)
|.+.++.+-..|.+.+||...+...... ....+..+
T Consensus 167 ----------------------------------D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~ki 212 (1189)
T KOG2041|consen 167 ----------------------------------DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKI 212 (1189)
T ss_pred ----------------------------------cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccc
Confidence 6677777778899999998754211111 01111223
Q ss_pred ceeee--------eccccEEEEeeeee-ecCce---eeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCC-------
Q 018858 229 GSQST--------SKVNIRDAEMEILD-QSGGK---RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDK------- 289 (349)
Q Consensus 229 ~~~~~--------~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~------- 289 (349)
..+.| -||...+++..... ..+.+ +..++.. .....+..+.|+ ++|.+|+.++.|.
T Consensus 213 a~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~--dtgm~~vgakWn---h~G~vLAvcG~~~da~~~~d 287 (1189)
T KOG2041|consen 213 AEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVV--DTGMKIVGAKWN---HNGAVLAVCGNDSDADEPTD 287 (1189)
T ss_pred cceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEE--ecccEeecceec---CCCcEEEEccCcccccCccc
Confidence 33332 24555665422111 01110 1111111 112467888999 9999999998652
Q ss_pred --eEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 290 --LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 290 --~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.|.+|..-. .++..+.-....|++++|-. .| +=++-..|+.|++=++
T Consensus 288 ~n~v~Fysp~G----------~i~gtlkvpg~~It~lsWEg-~g-LriA~AvdsfiyfanI 336 (1189)
T KOG2041|consen 288 SNKVHFYSPYG----------HIVGTLKVPGSCITGLSWEG-TG-LRIAIAVDSFIYFANI 336 (1189)
T ss_pred cceEEEeccch----------hheEEEecCCceeeeeEEcC-Cc-eEEEEEecceEEEEee
Confidence 344444332 55666666777899999944 33 3333345666665443
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.8e-09 Score=95.64 Aligned_cols=306 Identities=15% Similarity=0.115 Sum_probs=184.0
Q ss_pred eeeeEEEEecCCCceEE-EeCCCC--cEEEEECCCCc---EEEEee-----cCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 16 ATATCCIASRDRPGFVA-SSGEDG--CICWFDLRSKD---VQLVTD-----VGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~-t~~~dg--~i~vwd~~~~~---~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
..+...+|.+.....++ .+.... .|.+-...... .+..+. .....|.++.+.++...++.+..+|.|.+
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL 101 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence 35677778776334433 333332 24444333222 233333 23467999999999999999999999999
Q ss_pred E----EccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceecccc-----ccceeEEEEc
Q 018858 85 F----DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGH-----SSICSSVQFI 155 (349)
Q Consensus 85 w----d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~~v~~~~~~ 155 (349)
. +..+. ....+..+ +..|.+++|+||+..++..+.++.+.+.+ ++..++.+.. .+ ....-.+.|-
T Consensus 102 ~~~~~~~~~~-~~E~VG~v---d~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~fd~i~E~~-l~~~~~~~~~~VsVGWG 175 (928)
T PF04762_consen 102 VREDPDPDED-EIEIVGSV---DSGILAASWSPDEELLALVTGEGNLLLMT-RDFDPISEVP-LDSDDFGESKHVSVGWG 175 (928)
T ss_pred EEccCCCCCc-eeEEEEEE---cCcEEEEEECCCcCEEEEEeCCCEEEEEe-ccceEEEEee-cCccccCCCceeeeccC
Confidence 9 44432 22333333 57899999999999999999999998875 5555554443 11 1223334443
Q ss_pred cCC-CCCCCCCCC---------CC---CccccCCceeEEeecCcccccCCCCcEEEEEcC---C---CeEEEEEccCcee
Q 018858 156 PWK-PWEGLPENN---------GN---AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG---D---GVVDVINIESELN 216 (349)
Q Consensus 156 ~~~-~~~~~~~~~---------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---d---g~i~i~d~~~~~~ 216 (349)
... .+-|+.... .+ .+.......-..++|.. ||.+||+.+. . ..+++|+-+ +..
T Consensus 176 kKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRG------DG~yFAVss~~~~~~~~R~iRVy~Re-G~L 248 (928)
T PF04762_consen 176 KKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRG------DGEYFAVSSVEPETGSRRVIRVYSRE-GEL 248 (928)
T ss_pred cccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECC------CCcEEEEEEEEcCCCceeEEEEECCC-ceE
Confidence 321 111111110 00 01111122344556665 9999998874 2 579999977 433
Q ss_pred eeecCCCCCCccceeeeeccccEEEEeeeeeec---------CceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeC
Q 018858 217 ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS---------GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN 287 (349)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~ 287 (349)
... ..+....-..++|.|.|.++|+.-..... ..+..+....+......|..+.|+ +++..||..-.
T Consensus 249 ~st-SE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn---~ds~iLAv~~~ 324 (928)
T PF04762_consen 249 QST-SEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWN---SDSEILAVWLE 324 (928)
T ss_pred Eec-cccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEEC---CCCCEEEEEec
Confidence 332 22445556789999999999974431111 111122222222345689999999 89999999876
Q ss_pred CCeEEEEecCCCcceecccccceeeeccc--cccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 288 DKLVKVWDCSRFQGVQTSINNDLLIKNIN--LNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 288 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
|. |.+|-..+.. ..++.... ....+..+.|+|.+...|...+.+|.+..++
T Consensus 325 ~~-vqLWt~~NYH--------WYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~ 377 (928)
T PF04762_consen 325 DR-VQLWTRSNYH--------WYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYD 377 (928)
T ss_pred CC-ceEEEeeCCE--------EEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEE
Confidence 65 9999998863 22322222 2234555899997777788888777776654
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1e-09 Score=89.83 Aligned_cols=285 Identities=12% Similarity=0.119 Sum_probs=175.9
Q ss_pred eeeeEEEEecCCCceEEEeCCCC---------------cEEEEECCCCcEEEEeecCCCC--eE-EEEEecCCCEEEEEe
Q 018858 16 ATATCCIASRDRPGFVASSGEDG---------------CICWFDLRSKDVQLVTDVGNGP--VT-SLCFKSGNEDIIYVS 77 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg---------------~i~vwd~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~l~~~~ 77 (349)
..|.-+.|+|. ++||.|=+..+ .+.+||..++..+..+.....+ .. -+.|+-+.+++|-..
T Consensus 72 ~~V~~~~fSP~-~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv 150 (561)
T COG5354 72 PDVKYLDFSPN-EKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV 150 (561)
T ss_pred CCceecccCcc-cceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc
Confidence 46788899998 89999865433 4999999999999988876665 44 578888888776553
Q ss_pred CCCeEEEEEccCCCcccceeeccCcccceEEEEEccCC--CEEEE-----EcCCCcEEEEEcCCceEeceecccccccee
Q 018858 78 SGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS--SFLAC-----ADDGGDVKIIDIRQHCLYKSLRAGHSSICS 150 (349)
Q Consensus 78 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~ 150 (349)
...++|+++...-...++..+. ...+....|+|.+ ..|+. .+..+.+++|.+..+..+.+.. .....-.
T Consensus 151 -~~sl~i~e~t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~-lfk~~~~ 226 (561)
T COG5354 151 -GSSLYIHEITDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN-LFKVSGV 226 (561)
T ss_pred -cCeEEEEecCCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeee-eEeeccc
Confidence 4569999973222222333332 3678889999964 33443 4556789999988666554433 2223334
Q ss_pred EEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccce
Q 018858 151 SVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGS 230 (349)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 230 (349)
.+.|++.|.++.. +.... +..+..++ ....++|++++........ ....++..
T Consensus 227 qLkW~~~g~~ll~------------------l~~t~---~ksnKsyf----gesnLyl~~~~e~~i~V~~--~~~~pVhd 279 (561)
T COG5354 227 QLKWQVLGKYLLV------------------LVMTH---TKSNKSYF----GESNLYLLRITERSIPVEK--DLKDPVHD 279 (561)
T ss_pred EEEEecCCceEEE------------------EEEEe---eeccccee----ccceEEEEeecccccceec--ccccccee
Confidence 5667773222110 00000 00011111 2356788888744333332 45678999
Q ss_pred eeeeccccEEEEeee-eeecCc---eeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCC---CeEEEEecCCCccee
Q 018858 231 QSTSKVNIRDAEMEI-LDQSGG---KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND---KLVKVWDCSRFQGVQ 303 (349)
Q Consensus 231 ~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~ 303 (349)
.+|.|.++.+++..+ ....+. .+..+...+ ....=+.+.|+ |.+++++.++-| |.+-+||.....
T Consensus 280 f~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~--Pe~~rNT~~fs---p~~r~il~agF~nl~gni~i~~~~~rf--- 351 (561)
T COG5354 280 FTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYF--PEQKRNTIFFS---PHERYILFAGFDNLQGNIEIFDPAGRF--- 351 (561)
T ss_pred eeecccCCceeEEecccccceeecccccceEEec--CCccccccccc---CcccEEEEecCCccccceEEeccCCce---
Confidence 999999998887543 222221 122222222 23445678889 899999998765 789999998852
Q ss_pred cccccceeeeccccccceEEEEeecCCCCcEEEee------CCCeEEEeeC
Q 018858 304 TSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD------TSKVVKVYSI 348 (349)
Q Consensus 304 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------~dg~i~iw~~ 348 (349)
..+..+.+. ...-+.|+| +++++.+.. .|..|+||++
T Consensus 352 -----~~~~~~~~~--n~s~~~wsp-d~qF~~~~~ts~k~~~Dn~i~l~~v 394 (561)
T COG5354 352 -----KVAGAFNGL--NTSYCDWSP-DGQFYDTDTTSEKLRVDNSIKLWDV 394 (561)
T ss_pred -----EEEEEeecC--CceEeeccC-CceEEEecCCCcccccCcceEEEEe
Confidence 222233332 223346877 888877773 4789999997
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.4e-11 Score=89.92 Aligned_cols=167 Identities=13% Similarity=0.102 Sum_probs=107.0
Q ss_pred CCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEE-EEeecCCCCeEEEEEecCCCEEEEEeC-----CC
Q 018858 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQ-LVTDVGNGPVTSLCFKSGNEDIIYVSS-----GK 80 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg 80 (349)
+.+.+..|+++-.+-+.+-. ++-+++++.||.+.+++.+.-..+ ..+..-...-.+.++...++.+.++.. -+
T Consensus 81 ~~~~~a~~sep~p~~~~s~~-~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d 159 (319)
T KOG4714|consen 81 PFKVLAKNSEIDPNDACTMT-DNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQD 159 (319)
T ss_pred ceeeeeccCCCCCccccccc-CCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeecc
Confidence 44555555555444344433 567999999999999997652111 111111111122233334555544331 24
Q ss_pred eEEEEEccCCCcccceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCceEec-eeccccccceeEEEEccCC
Q 018858 81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYK-SLRAGHSSICSSVQFIPWK 158 (349)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~ 158 (349)
..+.|+++..+... .... ....|++++-+|.. +.+++|+.||.+-+||.++..... .++ .|+.++..+-|+|.
T Consensus 160 ~~~a~~~~p~~t~~--~~~~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~-ahk~~i~eV~FHpk- 234 (319)
T KOG4714|consen 160 NFYANTLDPIKTLI--PSKK-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLK-AHKAEIWEVHFHPK- 234 (319)
T ss_pred ceeeeccccccccc--cccc-ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHH-HhhhhhhheeccCC-
Confidence 56677766322111 1111 12448899999955 677889999999999999775443 455 89999999999995
Q ss_pred CCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC
Q 018858 159 PWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 213 (349)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 213 (349)
++..|+++++||.+.-||..+
T Consensus 235 ----------------------------------~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 235 ----------------------------------NPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ----------------------------------CchheeEecCCCcEEEEcCCC
Confidence 788999999999999999885
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.3e-11 Score=90.28 Aligned_cols=221 Identities=14% Similarity=0.181 Sum_probs=139.4
Q ss_pred CceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc-----EEEEeecCC------------CCeEEEEEecCC--CEEE
Q 018858 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD-----VQLVTDVGN------------GPVTSLCFKSGN--EDII 74 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~--~~l~ 74 (349)
..+.|+++.|... |.||++|...|.+.+|.-+... -...++.|. ..|..+.|..++ ..++
T Consensus 25 ead~ItaVefd~t-g~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 25 EADKITAVEFDET-GLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred ccceeeEEEeccc-cceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 3467999999988 8999999999999999865432 123355553 357788886644 3477
Q ss_pred EEeCCCeEEEEEccCCCc----------------------c-----------------cceee-ccCcccceEEEEEccC
Q 018858 75 YVSSGKEVKSFDVHMPAS----------------------W-----------------RPLES-YNYNKEEINQIVCNPK 114 (349)
Q Consensus 75 ~~~~dg~i~iwd~~~~~~----------------------~-----------------~~~~~-~~~~~~~v~~~~~~~~ 114 (349)
..+.|++|++|.+..... . .+-.. ...|.-.+.++.++.+
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD 183 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD 183 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence 778899999998754200 0 00000 1234556778889888
Q ss_pred CCEEEEEcCCCcEEEEEcCCce---Eeceecccc-----ccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCc
Q 018858 115 SSFLACADDGGDVKIIDIRQHC---LYKSLRAGH-----SSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPD 186 (349)
Q Consensus 115 ~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (349)
...++++ .|-.|.+|++.-.. .+-.++ .| ...|++..|+|.
T Consensus 184 ~et~lSa-DdLrINLWnl~i~D~sFnIVDiK-P~nmeeLteVItSaeFhp~----------------------------- 232 (460)
T COG5170 184 KETLLSA-DDLRINLWNLEIIDGSFNIVDIK-PHNMEELTEVITSAEFHPE----------------------------- 232 (460)
T ss_pred hheeeec-cceeeeeccccccCCceEEEecc-CccHHHHHHHHhhcccCHh-----------------------------
Confidence 8777765 45679999887221 111122 22 234677788884
Q ss_pred ccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcc
Q 018858 187 ADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAA 266 (349)
Q Consensus 187 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 266 (349)
..+.+.-.+..|.|++-|++............. . ....--..-+.+-...
T Consensus 233 ------~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe-----~-------------------~~D~v~~~ff~eivsS 282 (460)
T COG5170 233 ------MCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFE-----L-------------------TIDGVDVDFFEEIVSS 282 (460)
T ss_pred ------HcceEEEecCCCcEEehhhhhhhhccCchhhhh-----h-------------------ccCcccchhHHHHhhh
Confidence 567777788899999999995321110000000 0 0000000112222457
Q ss_pred eEEEEEeeecCCccEEEEeeCCCeEEEEecCCCc
Q 018858 267 ASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ 300 (349)
Q Consensus 267 i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 300 (349)
|..+.|+ ++|+|+++-+. -+|++||++..+
T Consensus 283 ISD~kFs---~ngryIlsRdy-ltvkiwDvnm~k 312 (460)
T COG5170 283 ISDFKFS---DNGRYILSRDY-LTVKIWDVNMAK 312 (460)
T ss_pred hcceEEc---CCCcEEEEecc-ceEEEEeccccc
Confidence 8899999 89999998765 689999998764
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.3e-10 Score=89.38 Aligned_cols=142 Identities=17% Similarity=0.195 Sum_probs=109.4
Q ss_pred CCceeeeEEEEecCCCceEEEeCCCC-cEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 018858 13 GHKATATCCIASRDRPGFVASSGEDG-CICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA 91 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~t~~~dg-~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 91 (349)
+|...|.=..+..+ ++-++.|..|| .+-|+|.++++. ..+...-+.|.++..+++|++++++.....+.+.|++++.
T Consensus 357 ~~~~~VrY~r~~~~-~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn 434 (668)
T COG4946 357 GKKGGVRYRRIQVD-PEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred CCCCceEEEEEccC-CcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence 46777887788777 66889999998 899999987764 4555567889999999999999999988999999999874
Q ss_pred cccceeeccCcccceEEEEEccCCCEEEEEcCCC----cEEEEEcCCceEeceeccccccceeEEEEccCCCCC
Q 018858 92 SWRPLESYNYNKEEINQIVCNPKSSFLACADDGG----DVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE 161 (349)
Q Consensus 92 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 161 (349)
. +.+... ..+-|+.++|+|+++++|-+--+| .|+++|+..++....-. ..+.-.+-+|.|++.++
T Consensus 435 v-~~idkS--~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT--~ta~DfsPaFD~d~ryL 503 (668)
T COG4946 435 V-RLIDKS--EYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT--PTAYDFSPAFDPDGRYL 503 (668)
T ss_pred e-eEeccc--ccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC--CcccccCcccCCCCcEE
Confidence 2 333322 246799999999999999776655 59999999887755433 33344566777776655
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-10 Score=92.04 Aligned_cols=156 Identities=15% Similarity=0.198 Sum_probs=110.5
Q ss_pred EEEEecCCCceEEEeCCCCcEEEEECCCCcE----EEEeecCCCCeEEEEEecCCCEEEEEeCCC---eEEEEEccCCCc
Q 018858 20 CCIASRDRPGFVASSGEDGCICWFDLRSKDV----QLVTDVGNGPVTSLCFKSGNEDIIYVSSGK---EVKSFDVHMPAS 92 (349)
Q Consensus 20 ~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~ 92 (349)
.+..++. +++||.+..+....++++..... +.... -...-+++.+..+...+..+-.-| .+.+|....+
T Consensus 67 ~~~~s~~-~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~-- 142 (390)
T KOG3914|consen 67 LVLTSDS-GRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG-- 142 (390)
T ss_pred ccccCCC-ceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeeccccc--
Confidence 3445565 88888888877777777654332 22222 223344555555555555544444 4555554432
Q ss_pred ccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCcc
Q 018858 93 WRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQ 172 (349)
Q Consensus 93 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 172 (349)
.....-+|-..++.++|+||+++++++..|..|++-.......+..+-.+|..-|..++..+
T Consensus 143 --~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~---------------- 204 (390)
T KOG3914|consen 143 --RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD---------------- 204 (390)
T ss_pred --CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc----------------
Confidence 22334467789999999999999999999999999888777777777668999999999886
Q ss_pred ccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeee
Q 018858 173 CYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS 218 (349)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 218 (349)
+..|++|+.|++|++||+++++.+.
T Consensus 205 ---------------------~~~LlS~sGD~tlr~Wd~~sgk~L~ 229 (390)
T KOG3914|consen 205 ---------------------NYLLLSGSGDKTLRLWDITSGKLLD 229 (390)
T ss_pred ---------------------CceeeecCCCCcEEEEecccCCccc
Confidence 4668999999999999999986654
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.5e-07 Score=74.75 Aligned_cols=228 Identities=14% Similarity=0.104 Sum_probs=142.8
Q ss_pred EEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEe-cCCCEEEEEeCCCeEEEEEccCCCcccceee
Q 018858 20 CCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFK-SGNEDIIYVSSGKEVKSFDVHMPASWRPLES 98 (349)
Q Consensus 20 ~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 98 (349)
++.|.+.++.++++--..+.|+.|+..+++.. .+.... ...+++. ++ ..++.+...+ +.++|..+++. ..+..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~~--~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~-~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-VIDLPG--PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKV-TVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEE-EEESSS--EEEEEEECTT-SEEEEEETTC-EEEEETTTTEE-EEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-EEecCC--CceEEEEccC-CEEEEEEcCc-eEEEecCCCcE-EEEee
Confidence 57888854788888878899999999877653 233222 6778887 55 4555666554 55559887643 33333
Q ss_pred cc--C-cccceEEEEEccCCCEEEEEcCC--------CcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCC
Q 018858 99 YN--Y-NKEEINQIVCNPKSSFLACADDG--------GDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENN 167 (349)
Q Consensus 99 ~~--~-~~~~v~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 167 (349)
.. . .....+.+++.|+|++.++.... |.|..++.. ++...... .-.....++|+|
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~--~~~~pNGi~~s~----------- 143 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD--GLGFPNGIAFSP----------- 143 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE--EESSEEEEEEET-----------
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec--CcccccceEECC-----------
Confidence 21 1 34568899999999977765543 457777766 44433333 344567888988
Q ss_pred CCCccccCCceeEEeecCcccccCCCCcEEE-EEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeee
Q 018858 168 GNAGQCYNPAFVHAIAIPDADMLDKTNKICV-VAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEIL 246 (349)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (349)
+++.|+ +-+..+.|..|++......
T Consensus 144 -------------------------dg~~lyv~ds~~~~i~~~~~~~~~~~----------------------------- 169 (246)
T PF08450_consen 144 -------------------------DGKTLYVADSFNGRIWRFDLDADGGE----------------------------- 169 (246)
T ss_dssp -------------------------TSSEEEEEETTTTEEEEEEEETTTCC-----------------------------
T ss_pred -------------------------cchheeecccccceeEEEeccccccc-----------------------------
Confidence 677654 5667888999998742100
Q ss_pred eecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEe
Q 018858 247 DQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCT 326 (349)
Q Consensus 247 ~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 326 (349)
....+....+....+..-.+++. .+|++.++....+.|.+++.+ + +++....-....+++++|
T Consensus 170 ----~~~~~~~~~~~~~~g~pDG~~vD---~~G~l~va~~~~~~I~~~~p~-G---------~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 170 ----LSNRRVFIDFPGGPGYPDGLAVD---SDGNLWVADWGGGRIVVFDPD-G---------KLLREIELPVPRPTNCAF 232 (246)
T ss_dssp ----EEEEEEEEE-SSSSCEEEEEEEB---TTS-EEEEEETTTEEEEEETT-S---------CEEEEEE-SSSSEEEEEE
T ss_pred ----eeeeeeEEEcCCCCcCCCcceEc---CCCCEEEEEcCCCEEEEECCC-c---------cEEEEEcCCCCCEEEEEE
Confidence 00012222333333457889999 899988887788999999988 4 444444333458899999
Q ss_pred ecCCCCcEEEee
Q 018858 327 TPTESENLVVCD 338 (349)
Q Consensus 327 ~~~~~~~l~~~~ 338 (349)
--++.+.|+..+
T Consensus 233 gg~~~~~L~vTt 244 (246)
T PF08450_consen 233 GGPDGKTLYVTT 244 (246)
T ss_dssp ESTTSSEEEEEE
T ss_pred ECCCCCEEEEEe
Confidence 544555555443
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.3e-09 Score=79.95 Aligned_cols=234 Identities=17% Similarity=0.084 Sum_probs=144.4
Q ss_pred CceEEEeCCCCcEEEEECCCCcE-EEEeecCCCCeEEEEE-ecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccc
Q 018858 28 PGFVASSGEDGCICWFDLRSKDV-QLVTDVGNGPVTSLCF-KSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEE 105 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 105 (349)
..+|+.||..|...+|...+.+. ......|...|+-..= .-....+..++.|.++++.+++-+.....+.. + .-.
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~-~--~~~ 160 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHN-Q--NLT 160 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeec-c--ccc
Confidence 35799999999999999886553 3333334443322111 11223466788899999998875432222211 1 123
Q ss_pred eEEEEEccCCCEEEEEcCCCcEEEEEcCC-ceEece-eccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEee
Q 018858 106 INQIVCNPKSSFLACADDGGDVKIIDIRQ-HCLYKS-LRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIA 183 (349)
Q Consensus 106 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (349)
+..++++++++++++.++...|..|.+.. ++.+.. ........-.+..|+.
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~--------------------------- 213 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE--------------------------- 213 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc---------------------------
Confidence 78899999999999999999999998873 332222 2113444556677777
Q ss_pred cCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCC
Q 018858 184 IPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGH 263 (349)
Q Consensus 184 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 263 (349)
+...+|++..||++.|||++....+.. ....+-..|
T Consensus 214 ---------~~~~FAv~~Qdg~~~I~DVR~~~tpm~-----------------------------------~~sstrp~h 249 (344)
T KOG4532|consen 214 ---------NDLQFAVVFQDGTCAIYDVRNMATPMA-----------------------------------EISSTRPHH 249 (344)
T ss_pred ---------CcceEEEEecCCcEEEEEecccccchh-----------------------------------hhcccCCCC
Confidence 788999999999999999997421111 112233458
Q ss_pred CcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecccccc-ceEEEEeecCCCCcEEEeeC
Q 018858 264 TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK-KVNWLCTTPTESENLVVCDT 339 (349)
Q Consensus 264 ~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~ 339 (349)
.+.+..+.|+|.++..-++++-. =+.+.+-|+++....+...... .....|.. .|..-.|+. +++.+.+.++
T Consensus 250 nGa~R~c~Fsl~g~lDLLf~sEh-fs~~hv~D~R~~~~~q~I~i~~--d~~~~~~tq~ifgt~f~~-~n~s~~v~~e 322 (344)
T KOG4532|consen 250 NGAFRVCRFSLYGLLDLLFISEH-FSRVHVVDTRNYVNHQVIVIPD--DVERKHNTQHIFGTNFNN-ENESNDVKNE 322 (344)
T ss_pred CCceEEEEecCCCcceEEEEecC-cceEEEEEcccCceeeEEecCc--cccccccccccccccccC-CCcccccccc
Confidence 99999999996444443444443 4789999999986543211101 11223333 366666654 4444444443
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.6e-09 Score=85.45 Aligned_cols=274 Identities=13% Similarity=0.056 Sum_probs=169.6
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEE-----eCC-----CeEEEE
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYV-----SSG-----KEVKSF 85 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----~~d-----g~i~iw 85 (349)
.+++..+++++ |++++.+. +..+.|++...+..+.+.... .+..+.|+|.+.+|.+= ..+ -.+.+|
T Consensus 35 ~~~~v~~~S~~-G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~ 110 (566)
T KOG2315|consen 35 RPCNVFAYSNN-GRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY 110 (566)
T ss_pred CcceeEEEcCC-CcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeee
Confidence 34566678876 77777655 568999999888654444322 78999999999998762 112 357899
Q ss_pred EccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCC
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPE 165 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 165 (349)
+++++.....+.. . ...-++..|++|..+.+- -..+.+++|++.+.+.+..- .|...+..+.++|.
T Consensus 111 ~vet~~~~s~~q~-k--~Q~~W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~~~k--l~~~~i~~f~lSpg-------- 176 (566)
T KOG2315|consen 111 NVETGVQRSQIQK-K--MQNGWVPQFSIDESLAAR-LVSNEVQFYDLGSFKTIQHK--LSVSGITMLSLSPG-------- 176 (566)
T ss_pred eeccceehhheeh-h--hhcCcccccccchhhhhh-hhcceEEEEecCCccceeee--eeccceeeEEecCC--------
Confidence 9997432222221 1 122268889988764432 23457999998864433222 35677888888882
Q ss_pred CCCCCccccCCceeEEeecCcccccCCCCcEEEE-----EcCCCeEEEEEccCce--eeeecCCCCCCccceeeeecccc
Q 018858 166 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV-----AKGDGVVDVINIESEL--NISRSKSTTKPLKGSQSTSKVNI 238 (349)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 238 (349)
+....+++ .+.-+.++||.+.... .....+.-....--.+.|++-|.
T Consensus 177 --------------------------p~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt 230 (566)
T KOG2315|consen 177 --------------------------PEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGT 230 (566)
T ss_pred --------------------------CCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCc
Confidence 12233332 3445689999887321 11122222334445678888888
Q ss_pred EEEEeeeeeecCc-------eeeeeeee------ec-CCCcceEEEEEeeecCCccEEEEe--eCCCeEEEEecCCCcce
Q 018858 239 RDAEMEILDQSGG-------KRLHLDYS------VG-GHTAAASCVAFSMFGERGKYLISG--GNDKLVKVWDCSRFQGV 302 (349)
Q Consensus 239 ~~~~~~~~~~~~~-------~~~~~~~~------~~-~h~~~i~~i~~~~~~~~~~~l~s~--~~d~~i~vwd~~~~~~~ 302 (349)
-|++....+.... ....++.+ +. ...++|.++.|+ ++++-++.+ -.--.+.|||++..
T Consensus 231 ~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~---~s~~EF~VvyGfMPAkvtifnlr~~--- 304 (566)
T KOG2315|consen 231 ALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWS---PSGREFAVVYGFMPAKVTIFNLRGK--- 304 (566)
T ss_pred eEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEEC---CCCCEEEEEEecccceEEEEcCCCC---
Confidence 7766554443321 11111111 11 136799999999 788765544 35678999999984
Q ss_pred ecccccceeeeccccccceEEEEeecCCCCcEEEeeCC---CeEEEeeCC
Q 018858 303 QTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS---KVVKVYSIS 349 (349)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~iw~~~ 349 (349)
++..+ -.++=+++-|+| .|++|+.+|.+ |.+-|||+.
T Consensus 305 -------~v~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~ 344 (566)
T KOG2315|consen 305 -------PVFDF--PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVP 344 (566)
T ss_pred -------EeEeC--CCCCccceEECC-CCCEEEEeecCCCCCceEEEecc
Confidence 43333 234556777877 88888888754 899999974
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.9e-11 Score=100.74 Aligned_cols=254 Identities=16% Similarity=0.185 Sum_probs=165.4
Q ss_pred eeEEEEecCC-CceEEEeCCCCcEEEEECCC---CcEEEEeecCCCCeEEEEEecCC-CEEEEEeCCCeEEEEEccCCCc
Q 018858 18 ATCCIASRDR-PGFVASSGEDGCICWFDLRS---KDVQLVTDVGNGPVTSLCFKSGN-EDIIYVSSGKEVKSFDVHMPAS 92 (349)
Q Consensus 18 i~~~~~~~~~-~~~l~t~~~dg~i~vwd~~~---~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~ 92 (349)
|-.+.|+|.. ..+-+.......-.+|++.. ...-..+.+|...|+.+.|.|.. ..+++++.|-.+..||+++..
T Consensus 70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~- 148 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH- 148 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC-
Confidence 6667777652 12333333345567898753 33345677899999999999854 568899999999999999754
Q ss_pred ccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCc-eEeceeccccccceeEEEEccCCCCCCCCCCCCCCc
Q 018858 93 WRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQH-CLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAG 171 (349)
Q Consensus 93 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 171 (349)
.++.....-......++|+-....+.+.+....|++||++.+ .++..++ +|...+..++|+.-
T Consensus 149 -~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K-~~vs~vn~~~fnr~-------------- 212 (1081)
T KOG0309|consen 149 -RPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLK-GHVSSVNSIDFNRF-------------- 212 (1081)
T ss_pred -cceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEec-ccceeeehHHHhhh--------------
Confidence 344444334466788999876655666667778999999954 5677888 78888888888762
Q ss_pred cccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCc
Q 018858 172 QCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG 251 (349)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (349)
....+.+.+.||+|++||..+...
T Consensus 213 ---------------------~~s~~~s~~~d~tvkfw~y~kSt~----------------------------------- 236 (1081)
T KOG0309|consen 213 ---------------------KYSEIMSSSNDGTVKFWDYSKSTT----------------------------------- 236 (1081)
T ss_pred ---------------------hhhhhcccCCCCceeeeccccccc-----------------------------------
Confidence 345677889999999999986311
Q ss_pred eeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceec-ccccceeeeccccccceEEEEeecCC
Q 018858 252 KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT-SINNDLLIKNINLNKKVNWLCTTPTE 330 (349)
Q Consensus 252 ~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~ 330 (349)
+..+.. ....+|..-.+.|++ +|.++.---.+..+.+++.++....+. ......+..+.+|.+.|....|-...
T Consensus 237 ---e~~~~v-tt~~piw~~r~~Pfg-~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~ 311 (1081)
T KOG0309|consen 237 ---ESKRTV-TTNFPIWRGRYLPFG-EGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRK 311 (1081)
T ss_pred ---ccceec-cccCcceeccccccC-ceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcc
Confidence 111111 123455555555442 344433222233555555444322211 11125678899999998877664321
Q ss_pred ---------CCcEEEeeCCCeEEEeeCC
Q 018858 331 ---------SENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 331 ---------~~~l~~~~~dg~i~iw~~~ 349 (349)
.-.|+|=+.|..+++|.+.
T Consensus 312 e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 312 ECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred cccCCCCccceeEEEeecCCceEeeecc
Confidence 1259999999999999863
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.4e-10 Score=96.41 Aligned_cols=230 Identities=10% Similarity=0.075 Sum_probs=153.6
Q ss_pred CCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEe--ecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVT--DVGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
.-++|.||.+.|.-+.|+.+ .+.|-|+..+|.|.+|-+-.+.....+ ....+.|.+++|+.+|..|+..-.||.|.+
T Consensus 63 mNQtLeGH~~sV~vvTWNe~-~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIV 141 (1189)
T KOG2041|consen 63 MNQTLEGHNASVMVVTWNEN-NQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIV 141 (1189)
T ss_pred hhhhhccCcceEEEEEeccc-cccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEE
Confidence 45789999999999999987 788999999999999998877643322 224567899999999999999999998887
Q ss_pred EEccCCCcc-cceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceec-----------cccccceeEE
Q 018858 85 FDVHMPASW-RPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR-----------AGHSSICSSV 152 (349)
Q Consensus 85 wd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----------~~~~~~v~~~ 152 (349)
=.++.++.. +.++. .....+.|++|.+.++.+-.+|.+.+||.+..-. ..+. ......+..+
T Consensus 142 GsvdGNRIwgKeLkg-----~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~-~Kl~~~c~Vn~tg~~s~~~~kia~i 215 (1189)
T KOG2041|consen 142 GSVDGNRIWGKELKG-----QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFE-RKLEKDCEVNGTGIFSNFPTKIAEI 215 (1189)
T ss_pred Eeeccceecchhcch-----heccceeecccHHHHHhhhcCCcEEEecccccHH-HhhhhceEEeeeeeecCCCccccce
Confidence 776643211 11111 2345789999999999999999999999763211 1111 0111123333
Q ss_pred EEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceee
Q 018858 153 QFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQS 232 (349)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 232 (349)
.|... |.....|+...|+++-..|.+.+..-.+...+.....+ ..+....
T Consensus 216 ~w~~g----------------------------~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg--m~~vgak 265 (1189)
T KOG2041|consen 216 EWNTG----------------------------PYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG--MKIVGAK 265 (1189)
T ss_pred eeccC----------------------------ccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc--cEeecce
Confidence 33320 11112337788999999999988877665444443332 5667889
Q ss_pred eeccccEEEEeeeeeecCce-----------eeeeeeeecCCCcceEEEEEe
Q 018858 233 TSKVNIRDAEMEILDQSGGK-----------RLHLDYSVGGHTAAASCVAFS 273 (349)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~h~~~i~~i~~~ 273 (349)
|+++|..+++.|........ -++.+.+++-....|+++.|-
T Consensus 266 Wnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~It~lsWE 317 (1189)
T KOG2041|consen 266 WNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSCITGLSWE 317 (1189)
T ss_pred ecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCceeeeeEEc
Confidence 99999999987764332221 112233444445567777775
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.6e-10 Score=90.38 Aligned_cols=159 Identities=20% Similarity=0.244 Sum_probs=110.5
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEEccCCCc-ccceeeccCcccceEEEEEccCCCEEEEEcCCCcEE---EEEcCCce
Q 018858 61 VTSLCFKSGNEDIIYVSSGKEVKSFDVHMPAS-WRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVK---IIDIRQHC 136 (349)
Q Consensus 61 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~---i~d~~~~~ 136 (349)
...+..++.++++|.+..+....++++..... .+.+..... ....+.+.+..+......+...|.++ +|....+.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 34455678899999998888888888875432 233333221 23344455555555555444444444 44444444
Q ss_pred EeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCcee
Q 018858 137 LYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN 216 (349)
Q Consensus 137 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 216 (349)
+...+ +|-+.++.++|+| |+++++++..|..|++-.+...
T Consensus 144 ~~~~l--GhvSml~dVavS~------------------------------------D~~~IitaDRDEkIRvs~ypa~-- 183 (390)
T KOG3914|consen 144 CEPIL--GHVSMLLDVAVSP------------------------------------DDQFIITADRDEKIRVSRYPAT-- 183 (390)
T ss_pred cchhh--hhhhhhheeeecC------------------------------------CCCEEEEecCCceEEEEecCcc--
Confidence 43333 6999999999999 7899999999999999877642
Q ss_pred eeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeee-ecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEe
Q 018858 217 ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYS-VGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD 295 (349)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd 295 (349)
..+.. ..||..-|..++.- ++..|+++|.|++|++||
T Consensus 184 --------------------------------------f~IesfclGH~eFVS~isl~----~~~~LlS~sGD~tlr~Wd 221 (390)
T KOG3914|consen 184 --------------------------------------FVIESFCLGHKEFVSTISLT----DNYLLLSGSGDKTLRLWD 221 (390)
T ss_pred --------------------------------------cchhhhccccHhheeeeeec----cCceeeecCCCCcEEEEe
Confidence 22233 34799999999986 566799999999999999
Q ss_pred cCCCcce
Q 018858 296 CSRFQGV 302 (349)
Q Consensus 296 ~~~~~~~ 302 (349)
+.++++.
T Consensus 222 ~~sgk~L 228 (390)
T KOG3914|consen 222 ITSGKLL 228 (390)
T ss_pred cccCCcc
Confidence 9999765
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.9e-09 Score=85.92 Aligned_cols=275 Identities=11% Similarity=0.004 Sum_probs=167.6
Q ss_pred CceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCC-------------
Q 018858 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGK------------- 80 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------------- 80 (349)
-.-++..+++||. |.+|++.... .|.+|.-.....+..+. | ..|..+.|+|++++|.+=+...
T Consensus 31 ~~~p~~~~~~SP~-G~~l~~~~~~-~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~ 106 (561)
T COG5354 31 ENWPVAYVSESPL-GTYLFSEHAA-GVECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTS 106 (561)
T ss_pred cCcchhheeecCc-chheehhhcc-ceEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCccc
Confidence 4567888999998 8999987764 58999988776555555 2 4689999999999999865432
Q ss_pred --eEEEEEccCCCcccceeeccCcccc--eE-EEEEccCCCEEEEEcCCCcEEEEEcCCceEe-ceeccccccceeEEEE
Q 018858 81 --EVKSFDVHMPASWRPLESYNYNKEE--IN-QIVCNPKSSFLACADDGGDVKIIDIRQHCLY-KSLRAGHSSICSSVQF 154 (349)
Q Consensus 81 --~i~iwd~~~~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~v~~~~~ 154 (349)
.+.+||+.++... ..+...... .+ -+.|+-+.++.|-- ....++|+++ ++... ..++......+....|
T Consensus 107 ~n~~~vwd~~sg~iv---~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsi 181 (561)
T COG5354 107 KNNVFVWDIASGMIV---FSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSI 181 (561)
T ss_pred cCceeEEeccCceeE---eeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEe
Confidence 4999999987443 333322222 33 67888887776644 2346999997 33221 1111012346778888
Q ss_pred ccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEE-----EEcCCCeEEEEEccCceeeeecCCCCCCccc
Q 018858 155 IPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV-----VAKGDGVVDVINIESELNISRSKSTTKPLKG 229 (349)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 229 (349)
+|.+ ++..|+ ..+..+++++|.+..+..+.. ....+..-.
T Consensus 182 sP~~----------------------------------n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~t-k~lfk~~~~ 226 (561)
T COG5354 182 SPEG----------------------------------NHDELAYWTPEKLNKPAMVRILSIPKNSVLVT-KNLFKVSGV 226 (561)
T ss_pred cCCC----------------------------------CCceEEEEccccCCCCcEEEEEEccCCCeeee-eeeEeeccc
Confidence 8831 222233 235678899999885543332 122233445
Q ss_pred eeeeeccccEEEEeeeeeecCc------eeeeee-------eeecCCCcceEEEEEeeecCCccEEEEe--eCCCeEEEE
Q 018858 230 SQSTSKVNIRDAEMEILDQSGG------KRLHLD-------YSVGGHTAAASCVAFSMFGERGKYLISG--GNDKLVKVW 294 (349)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-------~~~~~h~~~i~~i~~~~~~~~~~~l~s~--~~d~~i~vw 294 (349)
.+.|.+.|.++++....+-... ..+.+. .....-.++|....|. |.++.+++. -.+-.+.++
T Consensus 227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~---p~S~~F~vi~g~~pa~~s~~ 303 (561)
T COG5354 227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWE---PLSSRFAVISGYMPASVSVF 303 (561)
T ss_pred EEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeec---ccCCceeEEecccccceeec
Confidence 7889999999886332222100 011111 1111346789999999 666655443 478889999
Q ss_pred ecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCC---CeEEEeeC
Q 018858 295 DCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS---KVVKVYSI 348 (349)
Q Consensus 295 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~iw~~ 348 (349)
|++.. +. +......=+.+.|+| .+++++.++.| |.+-+|+.
T Consensus 304 ~lr~N----------l~--~~~Pe~~rNT~~fsp-~~r~il~agF~nl~gni~i~~~ 347 (561)
T COG5354 304 DLRGN----------LR--FYFPEQKRNTIFFSP-HERYILFAGFDNLQGNIEIFDP 347 (561)
T ss_pred ccccc----------eE--EecCCcccccccccC-cccEEEEecCCccccceEEecc
Confidence 99884 22 112223334455655 56666666544 56666653
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.1e-08 Score=77.44 Aligned_cols=241 Identities=15% Similarity=0.189 Sum_probs=139.5
Q ss_pred CCcEEEEECCCC--cE-EEEeecCCCCeEEEEEecCCCEEEEEeCC---CeEEEEEccCC-CcccceeeccCcccceEEE
Q 018858 37 DGCICWFDLRSK--DV-QLVTDVGNGPVTSLCFKSGNEDIIYVSSG---KEVKSFDVHMP-ASWRPLESYNYNKEEINQI 109 (349)
Q Consensus 37 dg~i~vwd~~~~--~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~ 109 (349)
..-|++|++.+. +. ...+-...+.++-++|+|+.++|.++..+ |.|.-|.+... .....+........+...+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 467999998743 22 11222356778899999999999888654 67888877642 1223333332233445889
Q ss_pred EEccCCCEEEEEcC-CCcEEEEEcCC-ceEe---ceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeec
Q 018858 110 VCNPKSSFLACADD-GGDVKIIDIRQ-HCLY---KSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAI 184 (349)
Q Consensus 110 ~~~~~~~~l~~~~~-dg~i~i~d~~~-~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (349)
++++++++++++.. .|.|.++-++. |.+. ..++ |.+.. | . .......++...+
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~--h~g~~------p-------------~-~rQ~~~h~H~a~~ 152 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVK--HTGSG------P-------------H-ERQESPHVHSANF 152 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeee--cCCCC------C-------------C-ccccCCccceeee
Confidence 99999999988764 57899998864 3322 2222 33220 0 0 0011112333444
Q ss_pred CcccccCCCCcEEEEEc-CCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCC
Q 018858 185 PDADMLDKTNKICVVAK-GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGH 263 (349)
Q Consensus 185 ~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 263 (349)
.| ++++|++.. .--+|.+|++..+..... ....++ .
T Consensus 153 tP------~~~~l~v~DLG~Dri~~y~~~dg~L~~~------------------------------------~~~~v~-~ 189 (346)
T COG2706 153 TP------DGRYLVVPDLGTDRIFLYDLDDGKLTPA------------------------------------DPAEVK-P 189 (346)
T ss_pred CC------CCCEEEEeecCCceEEEEEcccCccccc------------------------------------cccccC-C
Confidence 44 888888876 334799999986432111 111122 2
Q ss_pred CcceEEEEEeeecCCccEEEEee-CCCeEEEEecCCCccee-cccccceeeecccc--ccceEEEEeecCCCCcEEEee-
Q 018858 264 TAAASCVAFSMFGERGKYLISGG-NDKLVKVWDCSRFQGVQ-TSINNDLLIKNINL--NKKVNWLCTTPTESENLVVCD- 338 (349)
Q Consensus 264 ~~~i~~i~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~-~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~- 338 (349)
....+-|.|+ |++++..... .+++|-+|..+...... ..+ .+....... ....-.|.+++ +|++|+++.
T Consensus 190 G~GPRHi~FH---pn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ--~i~tlP~dF~g~~~~aaIhis~-dGrFLYasNR 263 (346)
T COG2706 190 GAGPRHIVFH---PNGKYAYLVNELNSTVDVLEYNPAVGKFEELQ--TIDTLPEDFTGTNWAAAIHISP-DGRFLYASNR 263 (346)
T ss_pred CCCcceEEEc---CCCcEEEEEeccCCEEEEEEEcCCCceEEEee--eeccCccccCCCCceeEEEECC-CCCEEEEecC
Confidence 3445788999 8999887766 47899999988742111 000 111111122 23445566766 888888874
Q ss_pred CCCeEEEeeC
Q 018858 339 TSKVVKVYSI 348 (349)
Q Consensus 339 ~dg~i~iw~~ 348 (349)
....|.+|.+
T Consensus 264 g~dsI~~f~V 273 (346)
T COG2706 264 GHDSIAVFSV 273 (346)
T ss_pred CCCeEEEEEE
Confidence 2235655543
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.1e-11 Score=98.46 Aligned_cols=176 Identities=13% Similarity=0.120 Sum_probs=123.6
Q ss_pred EEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCC-Ccc---cceeeccCcccceEEEEEccCCCEEEEEcCCCc
Q 018858 51 QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP-ASW---RPLESYNYNKEEINQIVCNPKSSFLACADDGGD 126 (349)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 126 (349)
++.+.+|...|..++--.+.+.+++++.|++|++|.++.. ... ....+++.|+.+|.++.|-.+.++++++ ||.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 4567789989988877778888999999999999999742 112 2445678899999999999888877764 788
Q ss_pred EEEEEcCCceEeceecc-ccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEE-cCCC
Q 018858 127 VKIIDIRQHCLYKSLRA-GHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA-KGDG 204 (349)
Q Consensus 127 i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg 204 (349)
|++||.--++.+.++.. ...+.+..+...|+ -+...+..| +...
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~n----------------------------------v~~~iliAgcsaeS 851 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLEN----------------------------------VDRHILIAGCSAES 851 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEeccc----------------------------------Ccchheeeeccchh
Confidence 99999876666554331 12223333333331 023344444 6788
Q ss_pred eEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEE
Q 018858 205 VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLIS 284 (349)
Q Consensus 205 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s 284 (349)
+|+++|.+.....- ...+..-.+..+.+.+++.. +.|++++.
T Consensus 852 TVKl~DaRsce~~~-----------------------------------E~kVcna~~Pna~~R~iaVa---~~GN~lAa 893 (1034)
T KOG4190|consen 852 TVKLFDARSCEWTC-----------------------------------ELKVCNAPGPNALTRAIAVA---DKGNKLAA 893 (1034)
T ss_pred hheeeeccccccee-----------------------------------eEEeccCCCCchheeEEEec---cCcchhhH
Confidence 99999999642100 01112223455678999999 89999999
Q ss_pred eeCCCeEEEEecCCCc
Q 018858 285 GGNDKLVKVWDCSRFQ 300 (349)
Q Consensus 285 ~~~d~~i~vwd~~~~~ 300 (349)
+-..|+|.+.|.++++
T Consensus 894 ~LSnGci~~LDaR~G~ 909 (1034)
T KOG4190|consen 894 ALSNGCIAILDARNGK 909 (1034)
T ss_pred HhcCCcEEEEecCCCc
Confidence 9999999999999984
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.2e-08 Score=83.45 Aligned_cols=141 Identities=5% Similarity=0.001 Sum_probs=87.0
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCc-eEEE-eCC--CCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEe-CC
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPG-FVAS-SGE--DGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVS-SG 79 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~-~l~t-~~~--dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d 79 (349)
+...+.+.... .+....|+|+ ++ .++. ... +..|+++|+.+++...... ..+......|+|||+.++... .+
T Consensus 178 g~~~~~~~~~~-~~~~p~wSpD-G~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~ 254 (419)
T PRK04043 178 LTYQKVIVKGG-LNIFPKWANK-EQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPK 254 (419)
T ss_pred CCceeEEccCC-CeEeEEECCC-CCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccC
Confidence 44445454333 6778899999 55 3553 322 3579999998887644433 455566788999998876543 33
Q ss_pred --CeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcC-CC--cEEEEEcCCceEeceeccccccceeEEEE
Q 018858 80 --KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-GG--DVKIIDIRQHCLYKSLRAGHSSICSSVQF 154 (349)
Q Consensus 80 --g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 154 (349)
..|.++|+..++ ...+.... .......|+|||+.|+..+. .+ .|++.|+.+++..+... . .. ....|
T Consensus 255 g~~~Iy~~dl~~g~-~~~LT~~~---~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~-g~--~~~~~ 326 (419)
T PRK04043 255 GQPDIYLYDTNTKT-LTQITNYP---GIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-H-GK--NNSSV 326 (419)
T ss_pred CCcEEEEEECCCCc-EEEcccCC---CccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-C-CC--cCceE
Confidence 478888887654 23333222 22345689999988776653 33 58888888776533322 1 11 12478
Q ss_pred cc
Q 018858 155 IP 156 (349)
Q Consensus 155 ~~ 156 (349)
+|
T Consensus 327 SP 328 (419)
T PRK04043 327 ST 328 (419)
T ss_pred CC
Confidence 88
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.2e-08 Score=81.87 Aligned_cols=263 Identities=10% Similarity=0.032 Sum_probs=137.4
Q ss_pred CceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEE-EEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcc--c
Q 018858 28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTS-LCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNK--E 104 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~ 104 (349)
+..++.++.+|.++.+|..+++.+....... .+.+ ... .+..++.++.++.|..||.++++............ .
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~ 181 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLR 181 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeec
Confidence 4567788889999999999999887765432 2221 122 34567778889999999998876443322211000 0
Q ss_pred ceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeec
Q 018858 105 EINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAI 184 (349)
Q Consensus 105 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (349)
........ +..++.+..++.+..+|+++++.+.+...........+ .. ...+.-
T Consensus 182 ~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~--~~----------------------~~~~~~ 235 (377)
T TIGR03300 182 GSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTEL--ER----------------------LVDVDG 235 (377)
T ss_pred CCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCch--hh----------------------hhccCC
Confidence 00011111 24677888889999999999887655431000000000 00 000000
Q ss_pred CcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeee----cCceeeeeeeee
Q 018858 185 PDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ----SGGKRLHLDYSV 260 (349)
Q Consensus 185 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 260 (349)
.|.. .+..+++++.+|.+..||.++++..-...... ...++. ++..+.+.. .++ ......+.+...
T Consensus 236 ~p~~----~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~---~~~p~~--~~~~vyv~~-~~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 236 DPVV----DGGQVYAVSYQGRVAALDLRSGRVLWKRDASS---YQGPAV--DDNRLYVTD-ADGVVVALDRRSGSELWKN 305 (377)
T ss_pred ccEE----ECCEEEEEEcCCEEEEEECCCCcEEEeeccCC---ccCceE--eCCEEEEEC-CCCeEEEEECCCCcEEEcc
Confidence 0000 24567777788999999998876544332111 111111 122222110 000 000111111111
Q ss_pred cCC-CcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEE-EEeecCCCCcEEEee
Q 018858 261 GGH-TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNW-LCTTPTESENLVVCD 338 (349)
Q Consensus 261 ~~h-~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~~ 338 (349)
... ......... .+..+++++.||.|+++|..++ +.+.....+...+.. .++ . ++ .|+.++
T Consensus 306 ~~~~~~~~ssp~i-----~g~~l~~~~~~G~l~~~d~~tG---------~~~~~~~~~~~~~~~sp~~-~-~~-~l~v~~ 368 (377)
T TIGR03300 306 DELKYRQLTAPAV-----VGGYLVVGDFEGYLHWLSREDG---------SFVARLKTDGSGIASPPVV-V-GD-GLLVQT 368 (377)
T ss_pred ccccCCccccCEE-----ECCEEEEEeCCCEEEEEECCCC---------CEEEEEEcCCCccccCCEE-E-CC-EEEEEe
Confidence 110 111122222 3568888999999999999988 444444433333322 222 2 33 599999
Q ss_pred CCCeEEEe
Q 018858 339 TSKVVKVY 346 (349)
Q Consensus 339 ~dg~i~iw 346 (349)
.||.|+.|
T Consensus 369 ~dG~l~~~ 376 (377)
T TIGR03300 369 RDGDLYAF 376 (377)
T ss_pred CCceEEEe
Confidence 99999876
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.7e-07 Score=71.86 Aligned_cols=236 Identities=9% Similarity=0.055 Sum_probs=126.4
Q ss_pred EEEecCCCEEEEEeCCCeEEEEEccCCC--cccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEecee
Q 018858 64 LCFKSGNEDIIYVSSGKEVKSFDVHMPA--SWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSL 141 (349)
Q Consensus 64 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 141 (349)
++.+.+|+.||.. .|..|.|-..++.- ........+.....-..++|+||+..||.+...|+|++||+...+ +..+
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVI 80 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eEEc
Confidence 4566788766654 46667666544320 111111111122345679999999999999999999999987543 3333
Q ss_pred cccc------ccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCc-
Q 018858 142 RAGH------SSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE- 214 (349)
Q Consensus 142 ~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~- 214 (349)
.... ...|..+.|.+. .-...=...|++-..+|.++=|-+..+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~------------------------------~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt 130 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEY------------------------------KKSAQWSYELLVINYRGQLRSYLVSVGT 130 (282)
T ss_pred CcccccCCccccceeeeEeecc------------------------------ccccccceeEEEEeccceeeeEEEEccc
Confidence 3111 233444445441 000000224556667777777665321
Q ss_pred ----e--eeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCC
Q 018858 215 ----L--NISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND 288 (349)
Q Consensus 215 ----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d 288 (349)
+ ....+.......+..+.++|..+.|++.|........ -++-...+++-.+-.-.|..+ .++..+|
T Consensus 131 ~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~-------s~a~~~GLtaWRiL~~~Pyyk-~v~~~~~ 202 (282)
T PF15492_consen 131 NQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGM-------SKASSCGLTAWRILSDSPYYK-QVTSSED 202 (282)
T ss_pred CCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcc-------ccccccCceEEEEcCCCCcEE-EccccCc
Confidence 1 1223444556677888888888877755544332111 011122333333320001111 1222222
Q ss_pred Ce------EEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 289 KL------VKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 289 ~~------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
+. -.+|.+.+. +.........+.|..+..+| ||+.|++...+|.|.+|+++
T Consensus 203 ~~~~~~~~~~~~~~~~~---------~~fs~~~~~~d~i~kmSlSP-dg~~La~ih~sG~lsLW~iP 259 (282)
T PF15492_consen 203 DITASSKRRGLLRIPSF---------KFFSRQGQEQDGIFKMSLSP-DGSLLACIHFSGSLSLWEIP 259 (282)
T ss_pred cccccccccceeeccce---------eeeeccccCCCceEEEEECC-CCCEEEEEEcCCeEEEEecC
Confidence 21 123333321 22222233567899999988 89999999999999999986
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.2e-08 Score=91.48 Aligned_cols=234 Identities=9% Similarity=0.126 Sum_probs=132.3
Q ss_pred eeEEEEecCCCceEEE-eCCCCcEEEEECCCCcEEEEeecC-----------------CCCeEEEEEec-CCCEEEEEeC
Q 018858 18 ATCCIASRDRPGFVAS-SGEDGCICWFDLRSKDVQLVTDVG-----------------NGPVTSLCFKS-GNEDIIYVSS 78 (349)
Q Consensus 18 i~~~~~~~~~~~~l~t-~~~dg~i~vwd~~~~~~~~~~~~~-----------------~~~v~~~~~~~-~~~~l~~~~~ 78 (349)
-..+++.++ ++.|+. -..+..|+++|..++. +.++.+. -.....++++| ++..+++.+.
T Consensus 626 P~GIavd~~-gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~ 703 (1057)
T PLN02919 626 PQGLAYNAK-KNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG 703 (1057)
T ss_pred CcEEEEeCC-CCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence 467888887 554444 4445789999987655 3333210 11245789999 4555566677
Q ss_pred CCeEEEEEccCCCccccee------eccC------cccceEEEEEccCCCEE-EEEcCCCcEEEEEcCCceEeceecccc
Q 018858 79 GKEVKSFDVHMPASWRPLE------SYNY------NKEEINQIVCNPKSSFL-ACADDGGDVKIIDIRQHCLYKSLRAGH 145 (349)
Q Consensus 79 dg~i~iwd~~~~~~~~~~~------~~~~------~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~ 145 (349)
++.|++||..++... .+. ...+ .-.....++++|+++.| ++-+.++.|++||+.++....... +.
T Consensus 704 ~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~g-g~ 781 (1057)
T PLN02919 704 QHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAG-GD 781 (1057)
T ss_pred CCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEe-cc
Confidence 889999998764321 110 0000 11245679999998744 555667899999998765321110 00
Q ss_pred cc-ceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCC
Q 018858 146 SS-ICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTT 224 (349)
Q Consensus 146 ~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 224 (349)
.. ......|.. .+..... ........+++.+ +|+++++-..+++|++||..++..........
T Consensus 782 ~~~~~~l~~fG~-------~dG~g~~---~~l~~P~Gvavd~------dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~ 845 (1057)
T PLN02919 782 PTFSDNLFKFGD-------HDGVGSE---VLLQHPLGVLCAK------DGQIYVADSYNHKIKKLDPATKRVTTLAGTGK 845 (1057)
T ss_pred cccCcccccccC-------CCCchhh---hhccCCceeeEeC------CCcEEEEECCCCEEEEEECCCCeEEEEeccCC
Confidence 00 000000100 0000000 0111223455555 78888888899999999998753322111000
Q ss_pred CCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcc
Q 018858 225 KPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG 301 (349)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 301 (349)
...++|. ...+.-.....++++ ++|+++++-+.++.|++||+.+++.
T Consensus 846 -------~G~~dG~--------------------~~~a~l~~P~GIavd---~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 846 -------AGFKDGK--------------------ALKAQLSEPAGLALG---ENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred -------cCCCCCc--------------------ccccccCCceEEEEe---CCCCEEEEECCCCEEEEEECCCCcc
Confidence 0000110 112223356789999 8999989888999999999988653
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.4e-08 Score=80.86 Aligned_cols=87 Identities=16% Similarity=0.072 Sum_probs=72.4
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCC-EEEEEeCCCeE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNE-DIIYVSSGKEV 82 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i 82 (349)
+++..+-+.+|...|..++|+|.+..++..++.+..|+|.|+++...+..+..+ ..+.+++|..+.. +|..|-..|.|
T Consensus 182 ~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~V 260 (463)
T KOG1645|consen 182 DFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMV 260 (463)
T ss_pred CcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceE
Confidence 345566778888999999999985558889999999999999999888888877 7899999987655 46666678999
Q ss_pred EEEEccCCC
Q 018858 83 KSFDVHMPA 91 (349)
Q Consensus 83 ~iwd~~~~~ 91 (349)
.|||++..+
T Consensus 261 lvyD~R~~~ 269 (463)
T KOG1645|consen 261 LVYDMRQPE 269 (463)
T ss_pred EEEEccCCC
Confidence 999998654
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.3e-07 Score=77.87 Aligned_cols=259 Identities=11% Similarity=0.032 Sum_probs=140.4
Q ss_pred CceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceE
Q 018858 28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEIN 107 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~ 107 (349)
+..++.++.+|.+..+|..+++.+............... ++..++.++.++.+..+|.++++....... ...+.
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~----~~~~~ 138 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKL----SSEVL 138 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeecc----Cceee
Confidence 457888888999999999999998876654432222222 467788888999999999988765433221 11221
Q ss_pred E-EEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCc
Q 018858 108 Q-IVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPD 186 (349)
Q Consensus 108 ~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (349)
+ ... .+..++.++.++.++.||.++++.+.+++ .... ...+.-.. +|
T Consensus 139 ~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~-~~~~-~~~~~~~~----------------------------sp 186 (377)
T TIGR03300 139 SPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYS-RVTP-ALTLRGSA----------------------------SP 186 (377)
T ss_pred cCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEc-cCCC-ceeecCCC----------------------------CC
Confidence 1 111 24567778889999999999999887766 2221 11110000 00
Q ss_pred ccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCC---Cc------c-ceeeeeccccEEEEee--eeeecCceee
Q 018858 187 ADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK---PL------K-GSQSTSKVNIRDAEME--ILDQSGGKRL 254 (349)
Q Consensus 187 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~------~-~~~~~~~~~~~~~~~~--~~~~~~~~~~ 254 (349)
.. .+..++.+..+|.+..+|.++++..-....... .. + ....+. ++..++... ..-.......
T Consensus 187 ~~----~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~-~~~vy~~~~~g~l~a~d~~tG 261 (377)
T TIGR03300 187 VI----ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVD-GGQVYAVSYQGRVAALDLRSG 261 (377)
T ss_pred EE----ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEE-CCEEEEEEcCCEEEEEECCCC
Confidence 00 124677788889999999988765432211100 00 0 111111 222222110 0000000111
Q ss_pred eeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecccccc-ceEEEEeecCCCCc
Q 018858 255 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK-KVNWLCTTPTESEN 333 (349)
Q Consensus 255 ~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~ 333 (349)
+.+.... . ........ .+..++.++.||.|+.+|..+++... ....... ...+... .+..
T Consensus 262 ~~~W~~~-~-~~~~~p~~-----~~~~vyv~~~~G~l~~~d~~tG~~~W---------~~~~~~~~~~ssp~i---~g~~ 322 (377)
T TIGR03300 262 RVLWKRD-A-SSYQGPAV-----DDNRLYVTDADGVVVALDRRSGSELW---------KNDELKYRQLTAPAV---VGGY 322 (377)
T ss_pred cEEEeec-c-CCccCceE-----eCCEEEEECCCCeEEEEECCCCcEEE---------ccccccCCccccCEE---ECCE
Confidence 1111111 0 11112222 34577777889999999999884322 2111111 1112122 2347
Q ss_pred EEEeeCCCeEEEeeC
Q 018858 334 LVVCDTSKVVKVYSI 348 (349)
Q Consensus 334 l~~~~~dg~i~iw~~ 348 (349)
|++++.+|.++++|.
T Consensus 323 l~~~~~~G~l~~~d~ 337 (377)
T TIGR03300 323 LVVGDFEGYLHWLSR 337 (377)
T ss_pred EEEEeCCCEEEEEEC
Confidence 888899999999875
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.8e-10 Score=87.30 Aligned_cols=166 Identities=14% Similarity=0.213 Sum_probs=113.8
Q ss_pred EEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCc-----eEeceeccccccc
Q 018858 74 IYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQH-----CLYKSLRAGHSSI 148 (349)
Q Consensus 74 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~~ 148 (349)
++.+.+..|-+-|++++.. +.+. .++.|.++.|...++++..|+++|.|..+|++.+ .+...+. |++.
T Consensus 228 fs~G~sqqv~L~nvetg~~----qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly--h~Ss 300 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ----QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY--HDSS 300 (425)
T ss_pred ecccccceeEEEEeecccc----cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE--cCcc
Confidence 4455567788888887532 1222 3577888999988899999999999999999854 3444454 7777
Q ss_pred eeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCcc
Q 018858 149 CSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLK 228 (349)
Q Consensus 149 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 228 (349)
|+++..... ++++|++.+.+|+|++||++..++
T Consensus 301 vtslq~Lq~-----------------------------------s~q~LmaS~M~gkikLyD~R~~K~------------ 333 (425)
T KOG2695|consen 301 VTSLQILQF-----------------------------------SQQKLMASDMTGKIKLYDLRATKC------------ 333 (425)
T ss_pred hhhhhhhcc-----------------------------------ccceEeeccCcCceeEeeehhhhc------------
Confidence 887765542 578889999999999999996321
Q ss_pred ceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEE--EEEeeecCCccEEEEeeCCCeEEEEecCCCcceeccc
Q 018858 229 GSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASC--VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSI 306 (349)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~--i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~ 306 (349)
..-+..+.+|...-.- +.+. +....+++++.|...|||.++.+
T Consensus 334 -------------------------~~~V~qYeGHvN~~a~l~~~v~---~eeg~I~s~GdDcytRiWsl~~g------- 378 (425)
T KOG2695|consen 334 -------------------------KKSVMQYEGHVNLSAYLPAHVK---EEEGSIFSVGDDCYTRIWSLDSG------- 378 (425)
T ss_pred -------------------------ccceeeeecccccccccccccc---cccceEEEccCeeEEEEEecccC-------
Confidence 1235566676432222 2233 56778999999999999999987
Q ss_pred ccceeeecc----ccccceEEEEeecCC
Q 018858 307 NNDLLIKNI----NLNKKVNWLCTTPTE 330 (349)
Q Consensus 307 ~~~~~~~~~----~~~~~v~~~~~~~~~ 330 (349)
.++.... .....+.++++....
T Consensus 379 --hLl~tipf~~s~~e~d~~sv~~~sr~ 404 (425)
T KOG2695|consen 379 --HLLCTIPFPYSASEVDIPSVAFDSRL 404 (425)
T ss_pred --ceeeccCCCCccccccccceehhccc
Confidence 3433322 223356667765543
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.6e-10 Score=95.40 Aligned_cols=203 Identities=16% Similarity=0.213 Sum_probs=141.9
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCc-ccceeeccCcccceEEEEEccCC--CEEEEEcCCCcEEEEEcCC
Q 018858 58 NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPAS-WRPLESYNYNKEEINQIVCNPKS--SFLACADDGGDVKIIDIRQ 134 (349)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~ 134 (349)
.+++..+.++|.|+-++.++.-| +.+.|+...-. .+-+..+. .-.|-.+.|+|.. .+-++......-.+|++..
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~t--pw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ 100 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHIT--PWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAK 100 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccC--cchhcceecccCCCCceeEEecCcchhhhhhhhc
Confidence 46778889999999999999877 66677765321 11122211 1245567787643 4444444555566898862
Q ss_pred --ceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEcc
Q 018858 135 --HCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE 212 (349)
Q Consensus 135 --~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 212 (349)
.+.+.-+..+|...++.+.|+|+ ....+++++.|-.+..||++
T Consensus 101 ss~~aIef~lhghsraitd~n~~~q-----------------------------------~pdVlatcsvdt~vh~wd~r 145 (1081)
T KOG0309|consen 101 SSSNAIEFVLHGHSRAITDINFNPQ-----------------------------------HPDVLATCSVDTYVHAWDMR 145 (1081)
T ss_pred CCccceEEEEecCccceeccccCCC-----------------------------------CCcceeeccccccceeeecc
Confidence 23333333389999999999996 67889999999999999999
Q ss_pred CceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEE
Q 018858 213 SELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVK 292 (349)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~ 292 (349)
+.. .++.....-...-..+.|+ ....-+.+.+..+.|+
T Consensus 146 Sp~---------------------------------------~p~ys~~~w~s~asqVkwn---yk~p~vlasshg~~i~ 183 (1081)
T KOG0309|consen 146 SPH---------------------------------------RPFYSTSSWRSAASQVKWN---YKDPNVLASSHGNDIF 183 (1081)
T ss_pred CCC---------------------------------------cceeeeecccccCceeeec---ccCcchhhhccCCceE
Confidence 742 2233333223345678888 4444444555667899
Q ss_pred EEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 293 VWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 293 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
+||++.+. .++....+|...|+.++|+......+.+++.||+|+.||.
T Consensus 184 vwd~r~gs--------~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y 231 (1081)
T KOG0309|consen 184 VWDLRKGS--------TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDY 231 (1081)
T ss_pred EEeccCCC--------cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecc
Confidence 99999875 5667778899999999997755557999999999999985
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1e-07 Score=86.42 Aligned_cols=138 Identities=9% Similarity=0.127 Sum_probs=89.0
Q ss_pred ceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcc----CC
Q 018858 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVH----MP 90 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~----~~ 90 (349)
.+.|.++.|..+ .+.++.+..+|.|.+-|.++.... ....-...|.+++|+|+++.++..+..+++.+-+-. ..
T Consensus 68 d~~i~s~~fl~d-~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E 145 (1265)
T KOG1920|consen 68 DDEIVSVQFLAD-TNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAE 145 (1265)
T ss_pred CcceEEEEEecc-cceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhc
Confidence 357999999988 677777888899999988776542 223345789999999999999999988877664321 00
Q ss_pred Cc----------------ccceeeccC---------------------cccceEEEEEccCCCEEEEE-----cCCCcEE
Q 018858 91 AS----------------WRPLESYNY---------------------NKEEINQIVCNPKSSFLACA-----DDGGDVK 128 (349)
Q Consensus 91 ~~----------------~~~~~~~~~---------------------~~~~v~~~~~~~~~~~l~~~-----~~dg~i~ 128 (349)
+. .+.-..+.+ ..+.=+.+.|--||+++|+. .....|+
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rkir 225 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIR 225 (1265)
T ss_pred cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEE
Confidence 00 000001110 01122458999999999873 3337899
Q ss_pred EEEcCCceEeceeccccccceeEEEEcc
Q 018858 129 IIDIRQHCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 129 i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
+||-+ +..-..-. ...+.-.+++|-|
T Consensus 226 V~drE-g~Lns~se-~~~~l~~~LsWkP 251 (1265)
T KOG1920|consen 226 VYDRE-GALNSTSE-PVEGLQHSLSWKP 251 (1265)
T ss_pred Eeccc-chhhcccC-cccccccceeecC
Confidence 99966 43322222 3344456788988
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.3e-07 Score=71.93 Aligned_cols=137 Identities=12% Similarity=0.063 Sum_probs=87.9
Q ss_pred CCcEEEEECCCCcEEEEeecCC--CCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccC
Q 018858 37 DGCICWFDLRSKDVQLVTDVGN--GPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK 114 (349)
Q Consensus 37 dg~i~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 114 (349)
+|+|..||..+++.+....... ....+. ..+++.++++++.++.|..||..+++....... ....... . ...
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~--~--~~~ 75 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGA--P--VVD 75 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSG--E--EEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccce--e--eec
Confidence 6899999999999988876421 222211 233567788888999999999988865443332 1111111 1 123
Q ss_pred CCEEEEEcCCCcEEEEEcCCceEecee-ccccccc---eeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCccccc
Q 018858 115 SSFLACADDGGDVKIIDIRQHCLYKSL-RAGHSSI---CSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADML 190 (349)
Q Consensus 115 ~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (349)
+..+++++.++.++.+|.++++.+... . ..... ........
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~~~~---------------------------------- 120 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYL-TSSPPAGVRSSSSPAV---------------------------------- 120 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE--SSCTCSTB--SEEEE----------------------------------
T ss_pred ccccccccceeeeEecccCCcceeeeecc-ccccccccccccCceE----------------------------------
Confidence 456666667889999999999998874 3 22111 11111211
Q ss_pred CCCCcEEEEEcCCCeEEEEEccCcee
Q 018858 191 DKTNKICVVAKGDGVVDVINIESELN 216 (349)
Q Consensus 191 ~~~~~~l~~~~~dg~i~i~d~~~~~~ 216 (349)
.+..++++..++.|..+|+++++.
T Consensus 121 --~~~~~~~~~~~g~l~~~d~~tG~~ 144 (238)
T PF13360_consen 121 --DGDRLYVGTSSGKLVALDPKTGKL 144 (238)
T ss_dssp --ETTEEEEEETCSEEEEEETTTTEE
T ss_pred --ecCEEEEEeccCcEEEEecCCCcE
Confidence 467788888899999999998743
|
... |
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.2e-08 Score=74.13 Aligned_cols=152 Identities=11% Similarity=0.036 Sum_probs=106.4
Q ss_pred eEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEE
Q 018858 30 FVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQI 109 (349)
Q Consensus 30 ~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~ 109 (349)
-+..++.|.++++.+++.+.....+....-.+.+++++++++++++.+....|..|.+........-.....-.+.-.+.
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~ 209 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYN 209 (344)
T ss_pred ceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceee
Confidence 35667778888888876554332222222347889999999999999999999999987543221111222223455678
Q ss_pred EEccCCCEEEEEcCCCcEEEEEcCCceEec----eeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecC
Q 018858 110 VCNPKSSFLACADDGGDVKIIDIRQHCLYK----SLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIP 185 (349)
Q Consensus 110 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (349)
.|+.....+|++..||.+.|||++...... .-++.|.+.++.+.|++-|
T Consensus 210 S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g--------------------------- 262 (344)
T KOG4532|consen 210 SFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYG--------------------------- 262 (344)
T ss_pred eeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCC---------------------------
Confidence 999999999999999999999999543222 1123688899999999832
Q ss_pred cccccCCCCcEEEEEcCCCeEEEEEccCce
Q 018858 186 DADMLDKTNKICVVAKGDGVVDVINIESEL 215 (349)
Q Consensus 186 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 215 (349)
--.+|+..-.-+.+.+.|+++..
T Consensus 263 -------~lDLLf~sEhfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 263 -------LLDLLFISEHFSRVHVVDTRNYV 285 (344)
T ss_pred -------cceEEEEecCcceEEEEEcccCc
Confidence 12455555667889999999854
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.5e-09 Score=85.45 Aligned_cols=222 Identities=14% Similarity=0.079 Sum_probs=148.6
Q ss_pred CCceeeeEEEEecCCCceEEEeCCCCcEEEEECCC--C-cEEEEeecCCCCeEEEEEecCCCEEEEEeC-CCeEEEEEcc
Q 018858 13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRS--K-DVQLVTDVGNGPVTSLCFKSGNEDIIYVSS-GKEVKSFDVH 88 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~--~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~ 88 (349)
-|.+.|+.+.... .+++.+++.||.++.|.-.. + +.+..+..|...+.+++.+-++-.+.+.+. |..++++|++
T Consensus 7 mhrd~i~hv~~tk--a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 7 MHRDVITHVFPTK--AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred cccceeeeEeeeh--hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEee
Confidence 4888888876654 58999999999999997543 1 224455668888999999999999999887 9999999998
Q ss_pred CCCcccceeeccCcccceEEEEEccC-C-CEEEE-EcCCCcEEEEEcCCce-EeceeccccccceeEEEEccCCCCCCCC
Q 018858 89 MPASWRPLESYNYNKEEINQIVCNPK-S-SFLAC-ADDGGDVKIIDIRQHC-LYKSLRAGHSSICSSVQFIPWKPWEGLP 164 (349)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~~~~~~~-~-~~l~~-~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 164 (349)
+-.....++.. ...+.+..+. ++. . ..+++ .-.++.+.++|-.... ....++.-|..+|..+.+.|
T Consensus 85 n~DminmiKL~-~lPg~a~wv~-skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~q-------- 154 (558)
T KOG0882|consen 85 NFDMINMIKLV-DLPGFAEWVT-SKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQ-------- 154 (558)
T ss_pred ccchhhhcccc-cCCCceEEec-CCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeec--------
Confidence 64322222221 1112222221 221 1 23443 3467889999977432 33333336889999999999
Q ss_pred CCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCc-eeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 165 ENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE-LNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
.+..+++....|.|.-|..+.. +.+. ..+-|....
T Consensus 155 ----------------------------a~Ds~vSiD~~gmVEyWs~e~~~qfPr----------~~l~~~~K~------ 190 (558)
T KOG0882|consen 155 ----------------------------AGDSAVSIDISGMVEYWSAEGPFQFPR----------TNLNFELKH------ 190 (558)
T ss_pred ----------------------------cccceeeccccceeEeecCCCcccCcc----------ccccccccc------
Confidence 7888999999999999998841 0000 001111100
Q ss_pred eeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCccee
Q 018858 244 EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ 303 (349)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 303 (349)
...+..+........++.|+ |++..+.+-+.|..|++++..+++..+
T Consensus 191 ----------eTdLy~f~K~Kt~pts~Efs---p~g~qistl~~DrkVR~F~~KtGklvq 237 (558)
T KOG0882|consen 191 ----------ETDLYGFPKAKTEPTSFEFS---PDGAQISTLNPDRKVRGFVFKTGKLVQ 237 (558)
T ss_pred ----------cchhhcccccccCccceEEc---cccCcccccCcccEEEEEEeccchhhh
Confidence 01122233345677899999 899999999999999999999987554
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.9e-06 Score=68.22 Aligned_cols=136 Identities=15% Similarity=0.140 Sum_probs=94.3
Q ss_pred eEEEEecCCCceEEEeCCCCc-EEEEECCCCcEEEEeecCCCCeE--EEEEecCCCEEEEEeC-----CCeEEEEEccCC
Q 018858 19 TCCIASRDRPGFVASSGEDGC-ICWFDLRSKDVQLVTDVGNGPVT--SLCFKSGNEDIIYVSS-----GKEVKSFDVHMP 90 (349)
Q Consensus 19 ~~~~~~~~~~~~l~t~~~dg~-i~vwd~~~~~~~~~~~~~~~~v~--~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~ 90 (349)
..++.+|..+..++.+-.-|+ ..+||..+++....+....+.-. .-.|+++|++|++.-. .|.|-|||...
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~- 86 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR- 86 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC-
Confidence 457788865777777777665 68999999998777655333322 2579999999988654 37999999983
Q ss_pred CcccceeeccCcccceEEEEEccCCCEEEEEcC------------------CCcEEEEEcCCceEeceec---cccccce
Q 018858 91 ASWRPLESYNYNKEEINQIVCNPKSSFLACADD------------------GGDVKIIDIRQHCLYKSLR---AGHSSIC 149 (349)
Q Consensus 91 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------dg~i~i~d~~~~~~~~~~~---~~~~~~v 149 (349)
....+..+..+.-....+.+.|+++.|+++.. +-++...|.++++.+.+.. ..|...+
T Consensus 87 -~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi 165 (305)
T PF07433_consen 87 -GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI 165 (305)
T ss_pred -CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence 35666677666666778899999988877632 2245556666777666533 0245567
Q ss_pred eEEEEcc
Q 018858 150 SSVQFIP 156 (349)
Q Consensus 150 ~~~~~~~ 156 (349)
..+++.+
T Consensus 166 RHLa~~~ 172 (305)
T PF07433_consen 166 RHLAVDG 172 (305)
T ss_pred eeEEecC
Confidence 7777766
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.4e-07 Score=78.44 Aligned_cols=230 Identities=13% Similarity=0.125 Sum_probs=141.6
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcC-----------CCcEEE
Q 018858 61 VTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-----------GGDVKI 129 (349)
Q Consensus 61 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------dg~i~i 129 (349)
=+-+.|||.|.||++--..| |.+|--++ ...+..+. | ..|..+.|+|..++|++-+. ...+.|
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~---f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGES---FDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCcc---HHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCceEEE
Confidence 35689999999999988766 88996543 33334442 3 56889999999999998653 256999
Q ss_pred EEcCCceEeceecccc--cccee-EEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeE
Q 018858 130 IDIRQHCLYKSLRAGH--SSICS-SVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVV 206 (349)
Q Consensus 130 ~d~~~~~~~~~~~~~~--~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 206 (349)
||+++|...+.+. .. ...+. -+.|+- +++++|.-.. ..|
T Consensus 287 WDI~tG~lkrsF~-~~~~~~~~WP~frWS~------------------------------------DdKy~Arm~~-~si 328 (698)
T KOG2314|consen 287 WDIATGLLKRSFP-VIKSPYLKWPIFRWSH------------------------------------DDKYFARMTG-NSI 328 (698)
T ss_pred EEccccchhccee-ccCCCccccceEEecc------------------------------------CCceeEEecc-ceE
Confidence 9999999888877 31 22222 345666 7888887665 468
Q ss_pred EEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeee--------eeecCCCcceEEEEEeeecCC
Q 018858 207 DVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLD--------YSVGGHTAAASCVAFSMFGER 278 (349)
Q Consensus 207 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~h~~~i~~i~~~~~~~~ 278 (349)
.||+..+ -.+...+...-..|....|+|.+..||+-.-....+.....++ ++..-|.-.-..+.|- .+
T Consensus 329 sIyEtps-f~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQ---k~ 404 (698)
T KOG2314|consen 329 SIYETPS-FMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQ---KS 404 (698)
T ss_pred EEEecCc-eeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEec---cC
Confidence 8999876 3333334444567889999999999996333222222222221 1111121122234455 66
Q ss_pred ccEEEEee----------CCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCC--CeEEEe
Q 018858 279 GKYLISGG----------NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS--KVVKVY 346 (349)
Q Consensus 279 ~~~l~s~~----------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~iw 346 (349)
|.||+.-- .=..+-|+.++.. .+..........|...+|-|...++.+..+.+ .++.+|
T Consensus 405 gdyLcvkvdR~tK~~~~g~f~n~eIfrireK---------dIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY 475 (698)
T KOG2314|consen 405 GDYLCVKVDRHTKSKVKGQFSNLEIFRIREK---------DIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFY 475 (698)
T ss_pred CcEEEEEEEeeccccccceEeeEEEEEeecc---------CCCceeeecchheeeeeeccCCCeEEEEEccccccceeEE
Confidence 77776421 1123556666554 33334445677899999988444443333332 455555
Q ss_pred e
Q 018858 347 S 347 (349)
Q Consensus 347 ~ 347 (349)
.
T Consensus 476 ~ 476 (698)
T KOG2314|consen 476 A 476 (698)
T ss_pred E
Confidence 4
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.6e-07 Score=72.33 Aligned_cols=89 Identities=12% Similarity=0.069 Sum_probs=61.4
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCC----------CCcEEEEECCCCcEEEEeecCCC-------CeEEEEEe
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGE----------DGCICWFDLRSKDVQLVTDVGNG-------PVTSLCFK 67 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~----------dg~i~vwd~~~~~~~~~~~~~~~-------~v~~~~~~ 67 (349)
++.+.++..-..+-. + ++|+ ++.|+.+.. +..|.+||..+.+.+..+..... ....++++
T Consensus 37 ~~v~g~i~~G~~P~~-~-~spD-g~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls 113 (352)
T TIGR02658 37 GRVLGMTDGGFLPNP-V-VASD-GSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLT 113 (352)
T ss_pred CEEEEEEEccCCCce-e-ECCC-CCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEEC
Confidence 344444543333322 3 8898 666665544 78999999999999888874322 23478899
Q ss_pred cCCCEEEEEeC--CCeEEEEEccCCCcccce
Q 018858 68 SGNEDIIYVSS--GKEVKSFDVHMPASWRPL 96 (349)
Q Consensus 68 ~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~ 96 (349)
|+|+++++... +..|.+.|+.+++....+
T Consensus 114 ~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei 144 (352)
T TIGR02658 114 PDNKTLLFYQFSPSPAVGVVDLEGKAFVRMM 144 (352)
T ss_pred CCCCEEEEecCCCCCEEEEEECCCCcEEEEE
Confidence 99999998763 689999999987544433
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.1e-10 Score=61.04 Aligned_cols=39 Identities=33% Similarity=0.450 Sum_probs=36.6
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEE
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFD 44 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd 44 (349)
+++++++++|.+.|++++|+|+ +.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~-~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPD-GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETT-SSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecc-cccceeeCCCCEEEEEC
Confidence 3578899999999999999999 89999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.2e-10 Score=85.76 Aligned_cols=132 Identities=13% Similarity=0.132 Sum_probs=104.8
Q ss_pred CeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC-----cEEEEeecCCCCeEEEEEec-CCCEEEEEeCCCe
Q 018858 8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK-----DVQLVTDVGNGPVTSLCFKS-GNEDIIYVSSGKE 81 (349)
Q Consensus 8 ~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~-----~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~ 81 (349)
.+.|. -+..|.++.|... +++++.|..+|.|...|++.+ .+...+ .|...|+++..-. ++++|.+.+.+|.
T Consensus 246 ~qsf~-sksDVfAlQf~~s-~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gk 322 (425)
T KOG2695|consen 246 QQSFQ-SKSDVFALQFAGS-DNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGK 322 (425)
T ss_pred ccccc-cchhHHHHHhccc-CCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCc
Confidence 33444 4577999999987 789999999999999999865 223344 3899999998876 7889999999999
Q ss_pred EEEEEccCCCcccceeeccCcccceEE--EEEccCCCEEEEEcCCCcEEEEEcCCceEeceec
Q 018858 82 VKSFDVHMPASWRPLESYNYNKEEINQ--IVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR 142 (349)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 142 (349)
|++||++.-++.+.+..+.+|...-.- +...+.+..++++++|-..+||.++.+..+.+++
T Consensus 323 ikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 323 IKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred eeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence 999999976666667788777543332 3445667889999999999999999999988877
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.2e-10 Score=98.83 Aligned_cols=144 Identities=18% Similarity=0.190 Sum_probs=109.8
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCC--eEE
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGK--EVK 83 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~ 83 (349)
...++++.|+...+|++|+-. .+.|+.|+..|.|+++++.+|.......+|..+|+.+.-+.+|..+++.+.-. -..
T Consensus 1092 r~w~~frd~~~~fTc~afs~~-~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGG-TNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred ccchhhhccccceeeEEeecC-CceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence 446678889999999999997 79999999999999999999999999999999999999999999887766443 467
Q ss_pred EEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceecc---ccccceeEEEEcc
Q 018858 84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA---GHSSICSSVQFIP 156 (349)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~~ 156 (349)
+|++.+ .......+ ..-.++.|+....+-+.|+......+||++++.++.++-. +....-.+..|+|
T Consensus 1171 LW~~~s--~~~~~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP 1240 (1516)
T KOG1832|consen 1171 LWDASS--TGGPRHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSP 1240 (1516)
T ss_pred Hhcccc--ccCccccc----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCC
Confidence 899874 22333333 3456778887665556677667899999999887766320 1222335667777
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.4e-08 Score=79.33 Aligned_cols=194 Identities=10% Similarity=0.147 Sum_probs=121.0
Q ss_pred cceEEEEEccCCCEEEEEcCCCcEEEEEcCCce-----Eeceecccc------------ccceeEEEEccCCCCCCCCCC
Q 018858 104 EEINQIVCNPKSSFLACADDGGDVKIIDIRQHC-----LYKSLRAGH------------SSICSSVQFIPWKPWEGLPEN 166 (349)
Q Consensus 104 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~------------~~~v~~~~~~~~~~~~~~~~~ 166 (349)
.-+.++.|...|.+|++|..+|.|.+|.-.... ....++ .| ...|..+.|.+++
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fq-shepEFDYLkSleieEKinkIrw~~~~-------- 96 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQ-SHEPEFDYLKSLEIEEKINKIRWLDDG-------- 96 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeee-ccCcccchhhhhhhhhhhhhceecCCC--------
Confidence 568899999999999999999999999744221 122222 22 2245556666531
Q ss_pred CCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeee-cCCC---CCCcccee---eeeccccE
Q 018858 167 NGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISR-SKST---TKPLKGSQ---STSKVNIR 239 (349)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~---~~~~~~~~---~~~~~~~~ 239 (349)
+...++..+.|.+|++|.+........ ...+ ....+.++ ...+-...
T Consensus 97 --------------------------n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~ 150 (433)
T KOG1354|consen 97 --------------------------NLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLE 150 (433)
T ss_pred --------------------------CccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccce
Confidence 456777888999999999986432220 0000 01111111 12221111
Q ss_pred EEEeeeeeecCceeeeeeeee-cCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccc
Q 018858 240 DAEMEILDQSGGKRLHLDYSV-GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLN 318 (349)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~-~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 318 (349)
+. ..+.+.+ .+|...|++|.++ .|...++++. |-.|.+|+++-..+......-++ ..+....
T Consensus 151 ve------------a~prRv~aNaHtyhiNSIS~N---sD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP-~nmEeLt 213 (433)
T KOG1354|consen 151 VE------------ASPRRVYANAHTYHINSISVN---SDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKP-ANMEELT 213 (433)
T ss_pred ee------------eeeeeeccccceeEeeeeeec---CccceEeecc-ceeeeeccccccCCceeEEEccc-cCHHHHH
Confidence 11 1333333 3688899999999 8988888775 78899999886543321100000 0111234
Q ss_pred cceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 319 KKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 319 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
..|++..|+|.....++-.++.|+|++-||+
T Consensus 214 eVITsaEFhp~~cn~f~YSSSKGtIrLcDmR 244 (433)
T KOG1354|consen 214 EVITSAEFHPHHCNVFVYSSSKGTIRLCDMR 244 (433)
T ss_pred HHHhhhccCHhHccEEEEecCCCcEEEeech
Confidence 4688999999888888888999999999985
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.9e-08 Score=84.97 Aligned_cols=127 Identities=15% Similarity=0.189 Sum_probs=96.5
Q ss_pred cCCCCeeeeCCceeeeEEEEecCC-----------CceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEec---C
Q 018858 4 AEAKPRRLRGHKATATCCIASRDR-----------PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKS---G 69 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~-----------~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~---~ 69 (349)
+.+.++.+..|+..|+.+.|.|.+ .-+||++...|.|.+||...+..+..+..|..++..++|-+ +
T Consensus 44 s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~ 123 (1062)
T KOG1912|consen 44 SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDD 123 (1062)
T ss_pred hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCc
Confidence 457788999999999999998742 12577888889999999999888888999999999999976 3
Q ss_pred C-CEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEcc-CCCEEEEEcCCCcEEEEEcC
Q 018858 70 N-EDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNP-KSSFLACADDGGDVKIIDIR 133 (349)
Q Consensus 70 ~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~ 133 (349)
. ..|++......+.+|+..+|+.... +........|+.+.| +.+.+..-+..|.+.+-+.-
T Consensus 124 Srd~LlaIh~ss~lvLwntdtG~k~Wk---~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l 186 (1062)
T KOG1912|consen 124 SRDVLLAIHGSSTLVLWNTDTGEKFWK---YDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDL 186 (1062)
T ss_pred chheeEEecCCcEEEEEEccCCceeec---cccCCcceeeeeeCCCCcceEEEEccCceEEEEecc
Confidence 3 4567777788999999998754322 222345677889988 55666666666777766643
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.6e-06 Score=66.59 Aligned_cols=219 Identities=13% Similarity=0.103 Sum_probs=121.6
Q ss_pred EEEecCCCceEEEeCCCCcEEEEECCCC--cEEEEeec---CCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccc
Q 018858 21 CIASRDRPGFVASSGEDGCICWFDLRSK--DVQLVTDV---GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRP 95 (349)
Q Consensus 21 ~~~~~~~~~~l~t~~~dg~i~vwd~~~~--~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 95 (349)
++.+.+ |++||.-- |..|.|=..++. ..+...+. ....=+.++|+||+..||.+...|+|+++|+.... ...
T Consensus 3 ~~~~~~-Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~ 79 (282)
T PF15492_consen 3 LALSSD-GKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFV 79 (282)
T ss_pred eeecCC-CcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eEE
Confidence 445555 77777654 566777655432 22222222 23345679999999999999999999999987421 221
Q ss_pred eee---cc-CcccceEEEEEccC------CCEEEEEcCCCcEEEEEcCC-----ceEeceec--cccccceeEEEEccCC
Q 018858 96 LES---YN-YNKEEINQIVCNPK------SSFLACADDGGDVKIIDIRQ-----HCLYKSLR--AGHSSICSSVQFIPWK 158 (349)
Q Consensus 96 ~~~---~~-~~~~~v~~~~~~~~------~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~--~~~~~~v~~~~~~~~~ 158 (349)
+.. .. .....|..+.|.+. ...|++-..+|.++-|-+.. .+....+. ......|.++.|+|
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p-- 157 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP-- 157 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC--
Confidence 111 11 11245566666442 12455556677777776532 12222222 12355788888887
Q ss_pred CCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCC-----------eEEEEEccCceeeeecCCCCCCc
Q 018858 159 PWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG-----------VVDVINIESELNISRSKSTTKPL 227 (349)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----------~i~i~d~~~~~~~~~~~~~~~~~ 227 (349)
..++|++|+... -+.-|.+-++.
T Consensus 158 ----------------------------------~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~------------ 191 (282)
T PF15492_consen 158 ----------------------------------KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDS------------ 191 (282)
T ss_pred ----------------------------------CCCEEEEeccCCCCCccccccccCceEEEEcCCC------------
Confidence 566777665321 13344433321
Q ss_pred cceeeeeccccEEEEeeeeeec-Cc--------eeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCC
Q 018858 228 KGSQSTSKVNIRDAEMEILDQS-GG--------KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR 298 (349)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~-~~--------~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 298 (349)
|..+.+.. ...+.. .. ...............|..+..+ |||.+||+...+|.|.+|++.+
T Consensus 192 -------Pyyk~v~~-~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlS---Pdg~~La~ih~sG~lsLW~iPs 260 (282)
T PF15492_consen 192 -------PYYKQVTS-SEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLS---PDGSLLACIHFSGSLSLWEIPS 260 (282)
T ss_pred -------CcEEEccc-cCccccccccccceeeccceeeeeccccCCCceEEEEEC---CCCCEEEEEEcCCeEEEEecCc
Confidence 11111110 000000 00 0011111112245689999999 9999999999999999999998
Q ss_pred Ccc
Q 018858 299 FQG 301 (349)
Q Consensus 299 ~~~ 301 (349)
-..
T Consensus 261 L~~ 263 (282)
T PF15492_consen 261 LRL 263 (282)
T ss_pred chh
Confidence 743
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.9e-08 Score=83.73 Aligned_cols=151 Identities=14% Similarity=0.167 Sum_probs=109.2
Q ss_pred ceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCccc
Q 018858 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWR 94 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 94 (349)
.+.+.|++++ +++|+-|.-+|.+++++... .. .+...|... ..+|+++++|+.||+|.|-.+-+.+...
T Consensus 39 ~D~is~~av~---~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVH---DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhHHHHHHhh---cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 3567788886 57999999999999998763 32 333334433 5689999999999999999888764332
Q ss_pred ceeeccCcccceEEEEEccC-----CCEEEEEcCCCcEEEEEcC--CceEeceeccccccceeEEEEccCCCCCCCCCCC
Q 018858 95 PLESYNYNKEEINQIVCNPK-----SSFLACADDGGDVKIIDIR--QHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENN 167 (349)
Q Consensus 95 ~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 167 (349)
. ..+ ..++.+++++|+ .+.+++|+..| +.++.-+ ..+..-.+. ...++|.++.|
T Consensus 108 ~-~df---~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~-~~eG~I~~i~W------------- 168 (846)
T KOG2066|consen 108 Q-YDF---KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLS-EGEGPIHSIKW------------- 168 (846)
T ss_pred e-Eec---CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeee-cCccceEEEEe-------------
Confidence 2 222 478999999997 57899999988 7777633 111111344 56788999998
Q ss_pred CCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecC
Q 018858 168 GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK 221 (349)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 221 (349)
.|+++|-++.+| |++||..+++.+....
T Consensus 169 -------------------------~g~lIAWand~G-v~vyd~~~~~~l~~i~ 196 (846)
T KOG2066|consen 169 -------------------------RGNLIAWANDDG-VKVYDTPTRQRLTNIP 196 (846)
T ss_pred -------------------------cCcEEEEecCCC-cEEEeccccceeeccC
Confidence 578999988877 8999999876554443
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.7e-07 Score=71.70 Aligned_cols=113 Identities=13% Similarity=0.091 Sum_probs=76.2
Q ss_pred CceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcc-cce
Q 018858 28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNK-EEI 106 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~v 106 (349)
+..+++++.++.|+.||..+|+.+..+.. ..++.... ...+..+++++.++.+..+|.++++............ ...
T Consensus 36 ~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~ 113 (238)
T PF13360_consen 36 GGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVR 113 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccccccccceeeeEecccCCcceeeeeccccccccccc
Confidence 46677778899999999999999888775 22222211 2245567777788899999999887655432211000 111
Q ss_pred EEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceec
Q 018858 107 NQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR 142 (349)
Q Consensus 107 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 142 (349)
........+..++++..++.|..+|+++|+.+....
T Consensus 114 ~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~ 149 (238)
T PF13360_consen 114 SSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYP 149 (238)
T ss_dssp --SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEE
T ss_pred cccCceEecCEEEEEeccCcEEEEecCCCcEEEEee
Confidence 222222237788888889999999999999988776
|
... |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.2e-06 Score=74.66 Aligned_cols=111 Identities=14% Similarity=0.106 Sum_probs=67.1
Q ss_pred CcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCE-EEEEeCC---CeEEEEEccCCCcccceeeccCcccceEEEEEcc
Q 018858 38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNED-IIYVSSG---KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNP 113 (349)
Q Consensus 38 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 113 (349)
..|.+=|.+... .+.+.... ......|+|+|+. ++..+.+ ..|.++|+.+++. +.+... .+......|+|
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~-~~lt~~---~g~~~~~~~SP 242 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK-EKIASS---QGMLVVSDVSK 242 (419)
T ss_pred ceEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE-EEEecC---CCcEEeeEECC
Confidence 355555554333 23333233 7778999999985 6654443 4789999987643 333332 34456678999
Q ss_pred CCCEEEEE-cC--CCcEEEEEcCCceEeceeccccccceeEEEEcc
Q 018858 114 KSSFLACA-DD--GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 114 ~~~~l~~~-~~--dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
||+.++.. +. +..|+++|+.+++.. .+. .+........|+|
T Consensus 243 DG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT-~~~~~d~~p~~SP 286 (419)
T PRK04043 243 DGSKLLLTMAPKGQPDIYLYDTNTKTLT-QIT-NYPGIDVNGNFVE 286 (419)
T ss_pred CCCEEEEEEccCCCcEEEEEECCCCcEE-Ecc-cCCCccCccEECC
Confidence 99877643 33 346888898777543 333 2333334557888
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.1e-07 Score=79.72 Aligned_cols=199 Identities=14% Similarity=0.129 Sum_probs=127.6
Q ss_pred eeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCC-eEEEEEecCCCEEEEEeCCC-----eEEEEEccCC
Q 018858 17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGP-VTSLCFKSGNEDIIYVSSGK-----EVKSFDVHMP 90 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~ 90 (349)
.|+| |++. +..++.|+.+|.|.+.+- .-+.+..++.+... |..+.......+|++.+.|+ .|+||+++..
T Consensus 27 ~isc--~~s~-~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~ 102 (933)
T KOG2114|consen 27 AISC--CSSS-TGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKV 102 (933)
T ss_pred ceeE--EcCC-CceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccccc
Confidence 4444 5666 788999999999888873 23445777777776 55554444446788877764 5999999753
Q ss_pred Cc---ccce---ee----ccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcC---CceEeceeccccccceeEEEEccC
Q 018858 91 AS---WRPL---ES----YNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIR---QHCLYKSLRAGHSSICSSVQFIPW 157 (349)
Q Consensus 91 ~~---~~~~---~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~~~~~~~v~~~~~~~~ 157 (349)
+. ...+ .. .+....++.+++.+.+-+.+|+|-.+|.|..+.-. .......+......+|+++++..
T Consensus 103 ~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~- 181 (933)
T KOG2114|consen 103 DKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS- 181 (933)
T ss_pred CCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec-
Confidence 11 1122 11 12235678899999999999999999999988522 11111112213567899999887
Q ss_pred CCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcE-EEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeecc
Q 018858 158 KPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKI-CVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKV 236 (349)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (349)
++.. +++++ -..|.+|.+....
T Consensus 182 -----------------------------------d~~s~lFv~T-t~~V~~y~l~gr~--------------------- 204 (933)
T KOG2114|consen 182 -----------------------------------DGKSVLFVAT-TEQVMLYSLSGRT--------------------- 204 (933)
T ss_pred -----------------------------------CCceeEEEEe-cceeEEEEecCCC---------------------
Confidence 4554 33333 3568899988520
Q ss_pred ccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCC
Q 018858 237 NIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 299 (349)
.....+..|...++|-.++ +....+++++. ..+++|+.+..
T Consensus 205 ------------------p~~~~ld~~G~~lnCss~~---~~t~qfIca~~-e~l~fY~sd~~ 245 (933)
T KOG2114|consen 205 ------------------PSLKVLDNNGISLNCSSFS---DGTYQFICAGS-EFLYFYDSDGR 245 (933)
T ss_pred ------------------cceeeeccCCccceeeecC---CCCccEEEecC-ceEEEEcCCCc
Confidence 1223456677788999998 33332444443 47999998875
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.2e-07 Score=80.51 Aligned_cols=156 Identities=12% Similarity=0.114 Sum_probs=117.8
Q ss_pred ceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCC------------CEEEEEeCCCeE
Q 018858 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGN------------EDIIYVSSGKEV 82 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~------------~~l~~~~~dg~i 82 (349)
...-.++.|+|. | ++|-|+. ..|.+-|..+.+.++.++.|...|+.+.|.|.. -.||++...|.|
T Consensus 15 ~sN~~A~Dw~~~-G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI 91 (1062)
T KOG1912|consen 15 RSNRNAADWSPS-G-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI 91 (1062)
T ss_pred cccccccccCcc-c-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence 334677889986 3 6776664 578999999999999999999999999998722 135666677999
Q ss_pred EEEEccCCCcccceeeccCcccceEEEEEcc---CC-CEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCC
Q 018858 83 KSFDVHMPASWRPLESYNYNKEEINQIVCNP---KS-SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWK 158 (349)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 158 (349)
.+||+..+. .+..++.+...+..++|-+ +. ..|+.-.....+.+|+..+|+...... .......|+.+.|-
T Consensus 92 il~d~~~~s---~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~-ys~~iLs~f~~DPf- 166 (1062)
T KOG1912|consen 92 ILVDFVLAS---VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD-YSHEILSCFRVDPF- 166 (1062)
T ss_pred EEEEehhhh---hhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc-cCCcceeeeeeCCC-
Confidence 999998653 3344555678888999866 33 456666667789999999999988877 45556778999883
Q ss_pred CCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEcc
Q 018858 159 PWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE 212 (349)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 212 (349)
+.+.+..-+..|.+.+-+.-
T Consensus 167 ----------------------------------d~rh~~~l~s~g~vl~~~~l 186 (1062)
T KOG1912|consen 167 ----------------------------------DSRHFCVLGSKGFVLSCKDL 186 (1062)
T ss_pred ----------------------------------CcceEEEEccCceEEEEecc
Confidence 66777777777877776654
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.9e-09 Score=56.39 Aligned_cols=38 Identities=32% Similarity=0.686 Sum_probs=35.8
Q ss_pred eeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEe
Q 018858 255 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD 295 (349)
Q Consensus 255 ~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd 295 (349)
+++..+.+|...|++++|+ |++++|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~---~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWS---PDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEE---TTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEe---cccccceeeCCCCEEEEEC
Confidence 5678899999999999999 8999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.5e-08 Score=84.69 Aligned_cols=185 Identities=16% Similarity=0.190 Sum_probs=133.3
Q ss_pred CceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceE
Q 018858 28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEIN 107 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~ 107 (349)
+..++.|+-...+..+|+.+.+..+......+.|.-++. +++++.+|...|+|.+-|.++ .+.+..+.+|.+.+.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s---~~~iht~~aHs~siS 221 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNS---FETIHTFDAHSGSIS 221 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCc---Cceeeeeecccccee
Confidence 556777877788999999988877766655556666654 578899999999999999886 466777888888887
Q ss_pred EEEEccCCCEEEEEcC---------CCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCce
Q 018858 108 QIVCNPKSSFLACADD---------GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAF 178 (349)
Q Consensus 108 ~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (349)
++.. .|+.|++++. |.-|+|||+|..+.+.-+. -+ ....-+.|.|.
T Consensus 222 DfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~-~~-~~P~flrf~Ps--------------------- 276 (1118)
T KOG1275|consen 222 DFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ-FP-YGPQFLRFHPS--------------------- 276 (1118)
T ss_pred eeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcc-cc-cCchhhhhccc---------------------
Confidence 6655 6888888875 4458999999877665554 22 22345667762
Q ss_pred eEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeee
Q 018858 179 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDY 258 (349)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (349)
-...+++++..|...+-|..+-. ....-+.
T Consensus 277 --------------l~t~~~V~S~sGq~q~vd~~~ls------------------------------------NP~~~~~ 306 (1118)
T KOG1275|consen 277 --------------LTTRLAVTSQSGQFQFVDTATLS------------------------------------NPPAGVK 306 (1118)
T ss_pred --------------ccceEEEEecccceeeccccccC------------------------------------CCcccee
Confidence 34568888889999998844310 0001111
Q ss_pred eecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEe
Q 018858 259 SVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD 295 (349)
Q Consensus 259 ~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd 295 (349)
.+......+..+.++ +++..++.|..+|.|.+|.
T Consensus 307 ~v~p~~s~i~~fDiS---sn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 307 MVNPNGSGISAFDIS---SNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred EEccCCCcceeEEec---CCCceEEEecccCcEeeec
Confidence 222233458899999 8999999999999999998
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.4e-06 Score=71.37 Aligned_cols=222 Identities=8% Similarity=0.064 Sum_probs=128.0
Q ss_pred ceEEEeCCCCcEEEEECCCCcEEEEeecCCCCe-----EEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCc-
Q 018858 29 GFVASSGEDGCICWFDLRSKDVQLVTDVGNGPV-----TSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYN- 102 (349)
Q Consensus 29 ~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~- 102 (349)
..++.+..+|.+..+|.++++.+.......... .+... .+..++.++.+|.+..+|.++++...........
T Consensus 161 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~ 238 (394)
T PRK11138 161 GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTG 238 (394)
T ss_pred CEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCC
Confidence 356667778999999999999988776431111 01111 1345777788899999998887643332211000
Q ss_pred cc---ceEEEEEcc--CCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCc
Q 018858 103 KE---EINQIVCNP--KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPA 177 (349)
Q Consensus 103 ~~---~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (349)
.. ....+.-+| .+..++.++.+|.+..+|..+++.+.+.. . .. ...+..
T Consensus 239 ~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~-~-~~-~~~~~~----------------------- 292 (394)
T PRK11138 239 ATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE-Y-GS-VNDFAV----------------------- 292 (394)
T ss_pred ccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeec-C-CC-ccCcEE-----------------------
Confidence 00 000111122 24567777788999999999998776544 1 11 111111
Q ss_pred eeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeee
Q 018858 178 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLD 257 (349)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (349)
.+..+++++.+|.+..+|..+++..-..
T Consensus 293 ---------------~~~~vy~~~~~g~l~ald~~tG~~~W~~------------------------------------- 320 (394)
T PRK11138 293 ---------------DGGRIYLVDQNDRVYALDTRGGVELWSQ------------------------------------- 320 (394)
T ss_pred ---------------ECCEEEEEcCCCeEEEEECCCCcEEEcc-------------------------------------
Confidence 3556777788999999999875211000
Q ss_pred eeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEE-EEeecCCCCcEEE
Q 018858 258 YSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNW-LCTTPTESENLVV 336 (349)
Q Consensus 258 ~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~ 336 (349)
..+. + ....+..+. +.+|+.++.||.|++.|..+++ .+....-....+.+ ..+ . ++ .|+.
T Consensus 321 ~~~~-~-~~~~sp~v~-----~g~l~v~~~~G~l~~ld~~tG~---------~~~~~~~~~~~~~s~P~~-~-~~-~l~v 381 (394)
T PRK11138 321 SDLL-H-RLLTAPVLY-----NGYLVVGDSEGYLHWINREDGR---------FVAQQKVDSSGFLSEPVV-A-DD-KLLI 381 (394)
T ss_pred cccC-C-CcccCCEEE-----CCEEEEEeCCCEEEEEECCCCC---------EEEEEEcCCCcceeCCEE-E-CC-EEEE
Confidence 0000 1 111222222 3467778899999999999984 33322222222222 122 1 33 7999
Q ss_pred eeCCCeEEEeeCC
Q 018858 337 CDTSKVVKVYSIS 349 (349)
Q Consensus 337 ~~~dg~i~iw~~~ 349 (349)
++.||.++.++++
T Consensus 382 ~t~~G~l~~~~~~ 394 (394)
T PRK11138 382 QARDGTVYAITRP 394 (394)
T ss_pred EeCCceEEEEeCC
Confidence 9999999998764
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.6e-05 Score=60.47 Aligned_cols=114 Identities=9% Similarity=0.109 Sum_probs=82.4
Q ss_pred EecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCc
Q 018858 23 ASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYN 102 (349)
Q Consensus 23 ~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 102 (349)
..++...+++.|+..+.+.--|..+|+.++.-.. ...+.+-+.- -|++++.|...|.+++.+++++..........
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~-- 93 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE-- 93 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehh--
Confidence 3444356788888889999999999988765331 2233332222 47889999999999999999986555444432
Q ss_pred ccceE-EEEEccCCCEEEEEcCCCcEEEEEcCCceEeceec
Q 018858 103 KEEIN-QIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR 142 (349)
Q Consensus 103 ~~~v~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 142 (349)
.|. .....+++..+.+|+.|++.+..|.++..++.+.+
T Consensus 94 --~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 94 --TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred --hhccceEEcCCCceEEEecCCCcEEEecccccceEEecc
Confidence 222 23456789999999999999999999888777666
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1e-07 Score=77.25 Aligned_cols=212 Identities=10% Similarity=0.105 Sum_probs=142.7
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcC-CCcEEEEEcCCc
Q 018858 57 GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-GGDVKIIDIRQH 135 (349)
Q Consensus 57 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~ 135 (349)
|...|+.+.-+ -.+++.+++.||.++.|--..-.-...+..+..|-..+.+++.+-++.++.+.+. |..++++|+++-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 55666655443 4678999999999999975432233445556677788889999999999999777 999999999876
Q ss_pred eEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCC---cEEEE-EcCCCeEEEEEc
Q 018858 136 CLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTN---KICVV-AKGDGVVDVINI 211 (349)
Q Consensus 136 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~-~~~dg~i~i~d~ 211 (349)
..+.-++ .......+.|... .| ..+++ ...+|.+.++|-
T Consensus 87 DminmiK--L~~lPg~a~wv~s-----------------------------------kGd~~s~IAVs~~~sg~i~VvD~ 129 (558)
T KOG0882|consen 87 DMINMIK--LVDLPGFAEWVTS-----------------------------------KGDKISLIAVSLFKSGKIFVVDG 129 (558)
T ss_pred chhhhcc--cccCCCceEEecC-----------------------------------CCCeeeeEEeecccCCCcEEECC
Confidence 5544333 1111112222110 12 13333 347789999998
Q ss_pred cCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeE
Q 018858 212 ESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLV 291 (349)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i 291 (349)
....+ +....-.-|..+|.++.+. +-+..+++....|.|
T Consensus 130 ~~d~~--------------------------------------q~~~fkklH~sPV~~i~y~---qa~Ds~vSiD~~gmV 168 (558)
T KOG0882|consen 130 FGDFC--------------------------------------QDGYFKKLHFSPVKKIRYN---QAGDSAVSIDISGMV 168 (558)
T ss_pred cCCcC--------------------------------------ccceecccccCceEEEEee---ccccceeecccccee
Confidence 75310 2223334588999999999 788899999999999
Q ss_pred EEEecCCCcce------ecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 292 KVWDCSRFQGV------QTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 292 ~vwd~~~~~~~------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.-|..+...+. .......-+..+........++.++| ++..+.+-+.|..|+++++
T Consensus 169 EyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~ 230 (558)
T KOG0882|consen 169 EYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVF 230 (558)
T ss_pred EeecCCCcccCccccccccccccchhhcccccccCccceEEcc-ccCcccccCcccEEEEEEe
Confidence 99998842111 11111122333444566788999988 8888999999999999875
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.9e-09 Score=87.56 Aligned_cols=203 Identities=14% Similarity=0.166 Sum_probs=129.9
Q ss_pred eeeeEEEEecCC-CceEEEeCCCCcEEEEECCCCcE--EEEeecCCCCeEEEEEec-CCCEEEEEe----CCCeEEEEEc
Q 018858 16 ATATCCIASRDR-PGFVASSGEDGCICWFDLRSKDV--QLVTDVGNGPVTSLCFKS-GNEDIIYVS----SGKEVKSFDV 87 (349)
Q Consensus 16 ~~i~~~~~~~~~-~~~l~t~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~----~dg~i~iwd~ 87 (349)
..+.|+++.-+. ..+++.|..+|.|.+-.++...- -...+++..+.++++|++ |.+.||.|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 457777766542 36788999999999988764322 334567888999999998 445566553 2468999999
Q ss_pred cCCCccccee--eccC-cccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceE-eceeccccccceeEEEEccCCCCCCC
Q 018858 88 HMPASWRPLE--SYNY-NKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL-YKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 88 ~~~~~~~~~~--~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
.++-. .+.. .+.. -.....+++|-.+.+++.+|.....+.++|++.... ...+ ....+..+...|-
T Consensus 137 ~s~lt-vPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv---nTk~vqG~tVdp~------ 206 (783)
T KOG1008|consen 137 NSLLT-VPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV---NTKYVQGITVDPF------ 206 (783)
T ss_pred ccccC-CCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh---hhhhcccceecCC------
Confidence 86411 1111 1111 224456788888889999999999999999984322 1222 2334666677663
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEE-ccCceeeeecCCCCCCccceeeeeccccEEEE
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVIN-IESELNISRSKSTTKPLKGSQSTSKVNIRDAE 242 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (349)
.+++++.- .||.|.+|| .++-+
T Consensus 207 -----------------------------~~nY~cs~-~dg~iAiwD~~rnie--------------------------- 229 (783)
T KOG1008|consen 207 -----------------------------SPNYFCSN-SDGDIAIWDTYRNIE--------------------------- 229 (783)
T ss_pred -----------------------------CCCceecc-ccCceeeccchhhhc---------------------------
Confidence 56777665 499999999 44311
Q ss_pred eeeeeecCceeeeeeeeecC----CCcceEEEEEeeecCCccEEEEeeC-CCeEEEEecCCC
Q 018858 243 MEILDQSGGKRLHLDYSVGG----HTAAASCVAFSMFGERGKYLISGGN-DKLVKVWDCSRF 299 (349)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~----h~~~i~~i~~~~~~~~~~~l~s~~~-d~~i~vwd~~~~ 299 (349)
.++..+.. ....+..++|+|+. . ..+++... .++|+.||+...
T Consensus 230 ------------npl~~i~~~~N~~~~~l~~~aycPtr-t-glla~l~RdS~tIrlydi~~v 277 (783)
T KOG1008|consen 230 ------------NPLQIILRNENKKPKQLFALAYCPTR-T-GLLAVLSRDSITIRLYDICVV 277 (783)
T ss_pred ------------cHHHHHhhCCCCcccceeeEEeccCC-c-chhhhhccCcceEEEeccccc
Confidence 11111111 11248899999743 3 35555554 488999998653
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.74 E-value=7.9e-07 Score=77.44 Aligned_cols=123 Identities=18% Similarity=0.210 Sum_probs=89.0
Q ss_pred CCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecC-----CCEEEEEeCCCeEEEEEccCCCcccceeeccC
Q 018858 27 RPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSG-----NEDIIYVSSGKEVKSFDVHMPASWRPLESYNY 101 (349)
Q Consensus 27 ~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 101 (349)
.|.++++|+.||.+.|-.+.+.+....+. ...++.+++++|+ .+.+++|+.-| +.++.-+=-...... .+..
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~ 158 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSE 158 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeec
Confidence 38999999999999999998888776666 4578999999997 56789999888 777653311111222 2334
Q ss_pred cccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEcc
Q 018858 102 NKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 102 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
..++|.++.|. |+++|-++.+| |++||+..++.+..++ .....++.=.|-|
T Consensus 159 ~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~-~p~~~~R~e~fpp 209 (846)
T KOG2066|consen 159 GEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIP-PPSQSVRPELFPP 209 (846)
T ss_pred CccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccC-CCCCCCCcccCCC
Confidence 46889999996 67888888776 9999999988887776 3334444333333
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.6e-07 Score=81.45 Aligned_cols=143 Identities=15% Similarity=0.167 Sum_probs=108.8
Q ss_pred CCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCC---------CeEEEEEccCCCccccee
Q 018858 27 RPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG---------KEVKSFDVHMPASWRPLE 97 (349)
Q Consensus 27 ~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~ 97 (349)
+++++++|...|+|.+-|..+.+.++++..|.+.|..+.. .|+.|++++.. .-|+|||++..+...++.
T Consensus 186 Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~ 263 (1118)
T KOG1275|consen 186 NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ 263 (1118)
T ss_pred cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcc
Confidence 3789999999999999999999999999999999987665 58899999854 468999999765554444
Q ss_pred eccCcccceEEEEEccC-CCEEEEEcCCCcEEEEE---cCCceE-eceeccccccceeEEEEccCCCCCCCCCCCCCCcc
Q 018858 98 SYNYNKEEINQIVCNPK-SSFLACADDGGDVKIID---IRQHCL-YKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQ 172 (349)
Q Consensus 98 ~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d---~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 172 (349)
.. .....+.|+|. ...+++.+..|...+-| +.+... +..+. .....+..+.+++
T Consensus 264 ~~----~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~-p~~s~i~~fDiSs---------------- 322 (1118)
T KOG1275|consen 264 FP----YGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVN-PNGSGISAFDISS---------------- 322 (1118)
T ss_pred cc----cCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEc-cCCCcceeEEecC----------------
Confidence 32 22356788885 36788888889999998 333311 11122 2334478888888
Q ss_pred ccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEcc
Q 018858 173 CYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE 212 (349)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 212 (349)
+++.++.|..+|.|.+|.-+
T Consensus 323 --------------------n~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 323 --------------------NGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred --------------------CCceEEEecccCcEeeecCC
Confidence 89999999999999999843
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.9e-07 Score=77.74 Aligned_cols=83 Identities=12% Similarity=0.099 Sum_probs=66.4
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK 83 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 83 (349)
++++.+... -.-.+++++|+|. .-.|+.|-.-|.+.+|...+.+.-.....|..+|..+.||++|..++++..-|.|.
T Consensus 49 tGEPqr~Vt-~P~hatSLCWHpe-~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~ 126 (1416)
T KOG3617|consen 49 TGEPQRDVT-YPVHATSLCWHPE-EFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVH 126 (1416)
T ss_pred CCCCCcccc-cceehhhhccChH-HHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeE
Confidence 444444333 1233567999998 67788888889999999887776555667999999999999999999999999999
Q ss_pred EEEcc
Q 018858 84 SFDVH 88 (349)
Q Consensus 84 iwd~~ 88 (349)
+|...
T Consensus 127 lwr~d 131 (1416)
T KOG3617|consen 127 LWRYD 131 (1416)
T ss_pred EEEee
Confidence 99876
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.8e-06 Score=73.93 Aligned_cols=194 Identities=15% Similarity=0.160 Sum_probs=117.4
Q ss_pred EEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccc-eEEEEEccCCCEEEEEcCCC-----cEEEEEcCCc---
Q 018858 65 CFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEE-INQIVCNPKSSFLACADDGG-----DVKIIDIRQH--- 135 (349)
Q Consensus 65 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~--- 135 (349)
+|++++..++.|+.+|.|.+.+-. .+.+..++.+... +..+....+..+|++.+.|+ .+++|+++.-
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s----~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS----FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc----ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 467889999999999999888754 3444556655555 55554444446777766654 4899998732
Q ss_pred ---eEe---ceec---cccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeE
Q 018858 136 ---CLY---KSLR---AGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVV 206 (349)
Q Consensus 136 ---~~~---~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 206 (349)
.++ +.+. +....++.+++.+. +-+.+|+|-.+|.|
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~------------------------------------~l~~Iv~Gf~nG~V 149 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSE------------------------------------DLKTIVCGFTNGLV 149 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEc------------------------------------cccEEEEEecCcEE
Confidence 222 1111 01133444555554 67889999999999
Q ss_pred EEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEee
Q 018858 207 DVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG 286 (349)
Q Consensus 207 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~ 286 (349)
..+.-.-.+ .+..+..... ....+|+.+.+. .+++-++-+.
T Consensus 150 ~~~~GDi~R-----------------------------------Drgsr~~~~~-~~~~pITgL~~~---~d~~s~lFv~ 190 (933)
T KOG2114|consen 150 ICYKGDILR-----------------------------------DRGSRQDYSH-RGKEPITGLALR---SDGKSVLFVA 190 (933)
T ss_pred EEEcCcchh-----------------------------------ccccceeeec-cCCCCceeeEEe---cCCceeEEEE
Confidence 887643110 0000111111 235689999998 6777633333
Q ss_pred CCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 287 NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 287 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
.-..|.+|.+.... +.......|....+|..+++..++ +++++ +..+.+|+
T Consensus 191 Tt~~V~~y~l~gr~--------p~~~~ld~~G~~lnCss~~~~t~q-fIca~-~e~l~fY~ 241 (933)
T KOG2114|consen 191 TTEQVMLYSLSGRT--------PSLKVLDNNGISLNCSSFSDGTYQ-FICAG-SEFLYFYD 241 (933)
T ss_pred ecceeEEEEecCCC--------cceeeeccCCccceeeecCCCCcc-EEEec-CceEEEEc
Confidence 34579999998642 234456677888888888765443 33333 33566665
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.3e-05 Score=69.14 Aligned_cols=118 Identities=10% Similarity=0.106 Sum_probs=87.0
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEE-EeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCccc
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQL-VTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWR 94 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 94 (349)
..|.=-+++.. .++++.|+.-|.+++|+-..++... ...+..+.+..+..+++..++|.|+..|.|.++-+.......
T Consensus 34 ~~v~lTc~dst-~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 34 ARVKLTCVDAT-EEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred ceEEEEEeecC-CceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence 33433345555 7899999999999999987766432 222344556677889988899999999999999887632222
Q ss_pred ceee---ccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCC
Q 018858 95 PLES---YNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ 134 (349)
Q Consensus 95 ~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 134 (349)
.... -..|...|++++|++++..+++|...|.|..-.+..
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 1111 223567899999999999999999999999888776
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.65 E-value=9.7e-05 Score=57.76 Aligned_cols=169 Identities=11% Similarity=0.116 Sum_probs=101.8
Q ss_pred eeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecC-CCCeEEEEEecCCCEEEEEeCCCeEEEEEc
Q 018858 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVG-NGPVTSLCFKSGNEDIIYVSSGKEVKSFDV 87 (349)
Q Consensus 9 ~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 87 (349)
+.+.+-.+.+..++|.|+++.++++....+.|...+. +++.+..+... .+..-.+++..++.++++.-.++.+.++++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 4566666779999999986678888888899998996 47887777644 356788999888877776667899999988
Q ss_pred cCCCcc---cc---ee--eccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCC---ceEecee-----c--cccccce
Q 018858 88 HMPASW---RP---LE--SYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ---HCLYKSL-----R--AGHSSIC 149 (349)
Q Consensus 88 ~~~~~~---~~---~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~-----~--~~~~~~v 149 (349)
...... .. +. ....+...+..++|.|.++.|+.+-+.....+|.+.. ...+... . ...-..+
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 432111 11 11 1112345689999999888787777776777776653 1111110 0 0122346
Q ss_pred eEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC
Q 018858 150 SSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 213 (349)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 213 (349)
.+++++|. .+.+++....+..|..+|...
T Consensus 174 S~l~~~p~-----------------------------------t~~lliLS~es~~l~~~d~~G 202 (248)
T PF06977_consen 174 SGLSYDPR-----------------------------------TGHLLILSDESRLLLELDRQG 202 (248)
T ss_dssp -EEEEETT-----------------------------------TTEEEEEETTTTEEEEE-TT-
T ss_pred cceEEcCC-----------------------------------CCeEEEEECCCCeEEEECCCC
Confidence 66777774 678888888899999999553
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.5e-08 Score=85.62 Aligned_cols=203 Identities=18% Similarity=0.214 Sum_probs=128.3
Q ss_pred CCCeEEEEEecCC--CEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEcc-CCCEEEEEcC----CCcEEEE
Q 018858 58 NGPVTSLCFKSGN--EDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNP-KSSFLACADD----GGDVKII 130 (349)
Q Consensus 58 ~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~----dg~i~i~ 130 (349)
...+.|+++.-+. ..+++|..+|.|-+-.++..... .-...+.+....++++|++ |.+.||+|-. |-.+.||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-cceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 3456677665433 45788889999999988754321 2233455668899999998 4567777643 4569999
Q ss_pred EcCCc--eEec--eeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeE
Q 018858 131 DIRQH--CLYK--SLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVV 206 (349)
Q Consensus 131 d~~~~--~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 206 (349)
|+.++ .+.. .+..+......+++|.. +.+++.+|.....+
T Consensus 135 di~s~ltvPke~~~fs~~~l~gqns~cwlr------------------------------------d~klvlaGm~sr~~ 178 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSSSTLDGQNSVCWLR------------------------------------DTKLVLAGMTSRSV 178 (783)
T ss_pred ecccccCCCccccccccccccCcccccccc------------------------------------Ccchhhcccccchh
Confidence 99865 1111 12201122333455543 67888899898999
Q ss_pred EEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEee
Q 018858 207 DVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG 286 (349)
Q Consensus 207 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~ 286 (349)
.++|++.. +.....-....+..+.++|| .+.|+++-.
T Consensus 179 ~ifdlRqs-----------------------------------------~~~~~svnTk~vqG~tVdp~--~~nY~cs~~ 215 (783)
T KOG1008|consen 179 HIFDLRQS-----------------------------------------LDSVSSVNTKYVQGITVDPF--SPNYFCSNS 215 (783)
T ss_pred hhhhhhhh-----------------------------------------hhhhhhhhhhhcccceecCC--CCCceeccc
Confidence 99999941 11111112335667778853 556887666
Q ss_pred CCCeEEEEec-CCCcceecccccceeeeccc----cccceEEEEeecCCCCcEEEeeCC-CeEEEeeCC
Q 018858 287 NDKLVKVWDC-SRFQGVQTSINNDLLIKNIN----LNKKVNWLCTTPTESENLVVCDTS-KVVKVYSIS 349 (349)
Q Consensus 287 ~d~~i~vwd~-~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~d-g~i~iw~~~ 349 (349)
||.|.+||. .+-+ .++..... ....+..++|+|.....+++...| ++|+.+++.
T Consensus 216 -dg~iAiwD~~rnie--------npl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 216 -DGDIAIWDTYRNIE--------NPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred -cCceeeccchhhhc--------cHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 999999994 3322 22222222 223588999999766688888754 789988863
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=0.00012 Score=62.69 Aligned_cols=107 Identities=8% Similarity=0.041 Sum_probs=72.4
Q ss_pred CceEEEeCCCCcEEEEECCCCcEEEEeecCCC----------Ce-EEEEEecCCCEEEEEeCCCeEEEEEccCCCcccce
Q 018858 28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNG----------PV-TSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPL 96 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~----------~v-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 96 (349)
+..++.++.+|.+.-+|.++++.++..+.... .+ ..+.. .+..++.++.+|.+.-+|.++++.....
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQT 146 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence 45777788889999999999998877653221 00 01111 3567788888999999999988755443
Q ss_pred eeccCcccceEE-EEEccCCCEEEEEcCCCcEEEEEcCCceEeceec
Q 018858 97 ESYNYNKEEINQ-IVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR 142 (349)
Q Consensus 97 ~~~~~~~~~v~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 142 (349)
..- ..+.+ ... .+..++.++.++.+..+|.++|+.+....
T Consensus 147 ~~~----~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~ 187 (394)
T PRK11138 147 KVA----GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVN 187 (394)
T ss_pred cCC----CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeec
Confidence 321 11111 111 24467778888999999999999888776
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.2e-06 Score=67.86 Aligned_cols=190 Identities=12% Similarity=0.179 Sum_probs=118.8
Q ss_pred ccceEEEEEccCCCEEEEEcCCCcEEEEEcCCce-----Eeceeccccc------------cceeEEEEccCCCCCCCCC
Q 018858 103 KEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC-----LYKSLRAGHS------------SICSSVQFIPWKPWEGLPE 165 (349)
Q Consensus 103 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~------------~~v~~~~~~~~~~~~~~~~ 165 (349)
...|+++.|...|.++++|...|.|.+|.-.... ....++ +|. ..|..+.|..+
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQ-she~EFDYLkSleieEKin~I~w~~~-------- 96 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQ-SHELEFDYLKSLEIEEKINAIEWFDD-------- 96 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhc-ccccchhhhhhccHHHHhhheeeecC--------
Confidence 3578999999999999999999999999754221 122333 332 23455555442
Q ss_pred CCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeec--------CCCCCCcc------cee
Q 018858 166 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS--------KSTTKPLK------GSQ 231 (349)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--------~~~~~~~~------~~~ 231 (349)
.....++..+.|.+|++|.+......... ..+.+.++ ...
T Consensus 97 --------------------------t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lp 150 (460)
T COG5170 97 --------------------------TGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLP 150 (460)
T ss_pred --------------------------CCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcc
Confidence 13356777789999999999864221111 01111111 111
Q ss_pred eeeccccEEEEeeeeeecCceeeeeeeee-cCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccce
Q 018858 232 STSKVNIRDAEMEILDQSGGKRLHLDYSV-GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDL 310 (349)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 310 (349)
..+..-.++++ .+.+.+ ..|...|+++.+. .|...++++. |-.|.+|++.-..... .
T Consensus 151 rls~hd~iiaa------------~p~rvyaNaH~yhiNSiS~N---sD~et~lSaD-dLrINLWnl~i~D~sF-----n- 208 (460)
T COG5170 151 RLSEHDEIIAA------------KPCRVYANAHPYHINSISFN---SDKETLLSAD-DLRINLWNLEIIDGSF-----N- 208 (460)
T ss_pred cccccceEEEe------------ccceeccccceeEeeeeeec---Cchheeeecc-ceeeeeccccccCCce-----E-
Confidence 23333333331 222233 5688899999999 7877777664 7889999988654322 1
Q ss_pred eeecccc-----ccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 311 LIKNINL-----NKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 311 ~~~~~~~-----~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
+.....| ...|++..|+|.....+.-.++.|.|++-|++
T Consensus 209 IVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlR 252 (460)
T COG5170 209 IVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLR 252 (460)
T ss_pred EEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhh
Confidence 1122233 34588889999766777778889999998874
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.62 E-value=7.5e-06 Score=69.37 Aligned_cols=115 Identities=12% Similarity=0.124 Sum_probs=79.0
Q ss_pred CeEEEEEec-CCCEEEEE----eCCC----eEEEEEccCCCccccee-eccCcccceEEEEEccCCCEEEEEcCCCcEEE
Q 018858 60 PVTSLCFKS-GNEDIIYV----SSGK----EVKSFDVHMPASWRPLE-SYNYNKEEINQIVCNPKSSFLACADDGGDVKI 129 (349)
Q Consensus 60 ~v~~~~~~~-~~~~l~~~----~~dg----~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 129 (349)
...++.|+. +...+.+. +.+| .-.+|++..++. +.+. +.-.....+.+.+++|+...++.|+.||.|.+
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~kl-qrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKL-QRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL 285 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCce-eEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE
Confidence 345667765 33444443 2334 235666654332 2221 11123568999999999999999999999999
Q ss_pred EEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEE
Q 018858 130 IDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVI 209 (349)
Q Consensus 130 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~ 209 (349)
||...+..... + ..-..+.++|+| +|.++++|+..|.+.+|
T Consensus 286 yD~~~~~t~~~-k--a~~~P~~iaWHp------------------------------------~gai~~V~s~qGelQ~F 326 (545)
T PF11768_consen 286 YDTTRGVTLLA-K--AEFIPTLIAWHP------------------------------------DGAIFVVGSEQGELQCF 326 (545)
T ss_pred EEcCCCeeeee-e--ecccceEEEEcC------------------------------------CCcEEEEEcCCceEEEE
Confidence 99876633222 2 344578889999 89999999999999999
Q ss_pred EccCc
Q 018858 210 NIESE 214 (349)
Q Consensus 210 d~~~~ 214 (349)
|+.-.
T Consensus 327 D~ALs 331 (545)
T PF11768_consen 327 DMALS 331 (545)
T ss_pred EeecC
Confidence 99754
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.1e-08 Score=86.21 Aligned_cols=193 Identities=13% Similarity=0.089 Sum_probs=128.5
Q ss_pred EEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCC--cEE
Q 018858 51 QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGG--DVK 128 (349)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~ 128 (349)
..++..|+...++++|+-..++|+.|+..|.|+++++.+|.. .....+|..+++-+.=+.+|..+++.+... -..
T Consensus 1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~---e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM---EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccc---cccccccccccccccccCCcceeeeeccccCchHH
Confidence 346677889999999999999999999999999999998743 355667889999998888998777665433 367
Q ss_pred EEEcCC-ceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEE
Q 018858 129 IIDIRQ-HCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVD 207 (349)
Q Consensus 129 i~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 207 (349)
+|++.+ +...+++. .-.++.|+. .-..-+.|+......
T Consensus 1171 LW~~~s~~~~~Hsf~-----ed~~vkFsn------------------------------------~~q~r~~gt~~d~a~ 1209 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFD-----EDKAVKFSN------------------------------------SLQFRALGTEADDAL 1209 (1516)
T ss_pred HhccccccCcccccc-----ccceeehhh------------------------------------hHHHHHhcccccceE
Confidence 899873 44445554 245677776 333335566666788
Q ss_pred EEEccCceeeeec-CCCC--CCccceeeeeccccEEEEee-eeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEE
Q 018858 208 VINIESELNISRS-KSTT--KPLKGSQSTSKVNIRDAEME-ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLI 283 (349)
Q Consensus 208 i~d~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~ 283 (349)
+||++++....+. .... ...-....|+|+-..+.-.| -||..+. +.++.+......+ .=.|+ |.|.-++
T Consensus 1210 ~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIlndGvLWDvR~~---~aIh~FD~ft~~~-~G~FH---P~g~eVI 1282 (1516)
T KOG1832|consen 1210 LYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILNDGVLWDVRIP---EAIHRFDQFTDYG-GGGFH---PSGNEVI 1282 (1516)
T ss_pred EEecccCcHHHHhcCcchhhhhhccccccCCCcceEeeCceeeeeccH---HHHhhhhhheecc-ccccc---CCCceEE
Confidence 9999987655442 2211 12225677888888777322 2333322 3333333222222 22356 7888888
Q ss_pred EeeCCCeEEEEecCCC
Q 018858 284 SGGNDKLVKVWDCSRF 299 (349)
Q Consensus 284 s~~~d~~i~vwd~~~~ 299 (349)
.-++ |||+++.
T Consensus 1283 INSE-----IwD~RTF 1293 (1516)
T KOG1832|consen 1283 INSE-----IWDMRTF 1293 (1516)
T ss_pred eech-----hhhhHHH
Confidence 7775 8999886
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.2e-05 Score=68.10 Aligned_cols=110 Identities=9% Similarity=0.129 Sum_probs=79.5
Q ss_pred eEEEEecCCCceEEEe----CCCCc----EEEEECCCCcE----EEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEE
Q 018858 19 TCCIASRDRPGFVASS----GEDGC----ICWFDLRSKDV----QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFD 86 (349)
Q Consensus 19 ~~~~~~~~~~~~l~t~----~~dg~----i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 86 (349)
.++.|+-.++..+.|. +.+|. -.+|++...+. +.++ .....|.+++++|+.+.++.|+.||+|.+||
T Consensus 209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD 287 (545)
T PF11768_consen 209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDGSIILYD 287 (545)
T ss_pred EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence 4567876545666653 33443 34666654443 1222 3677899999999999999999999999999
Q ss_pred ccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCC
Q 018858 87 VHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ 134 (349)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 134 (349)
...+.. ......-.++.++|+|+|..+++|+..|.+.+||+.-
T Consensus 288 ~~~~~t-----~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 288 TTRGVT-----LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred cCCCee-----eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 875421 1111234578899999999999999999999999863
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.00015 Score=57.67 Aligned_cols=194 Identities=15% Similarity=0.138 Sum_probs=111.7
Q ss_pred EEEEec-CCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEc-cCCCEEEEEcCCCcEEEEEcCCceEece
Q 018858 63 SLCFKS-GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCN-PKSSFLACADDGGDVKIIDIRQHCLYKS 140 (349)
Q Consensus 63 ~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 140 (349)
++.|.+ ++.++++-...+.|..|+..+++. ..... .....+++. +++.+++ +.. +.+.++|..+++....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~--~~~~~----~~~~G~~~~~~~g~l~v-~~~-~~~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV--EVIDL----PGPNGMAFDRPDGRLYV-ADS-GGIAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEE--EEEES----SSEEEEEEECTTSEEEE-EET-TCEEEEETTTTEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeE--EEEec----CCCceEEEEccCCEEEE-EEc-CceEEEecCCCcEEEE
Confidence 577888 666666666789999999886531 11222 226677777 5655444 444 3466669888765433
Q ss_pred ecc---c-cccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCC--------CeEEE
Q 018858 141 LRA---G-HSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD--------GVVDV 208 (349)
Q Consensus 141 ~~~---~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--------g~i~i 208 (349)
... . .......+++.| +|++.++.... |.|..
T Consensus 76 ~~~~~~~~~~~~~ND~~vd~------------------------------------~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVDP------------------------------------DGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEETTCSCTEEEEEEEE-T------------------------------------TS-EEEEEECCBCTTCGGSEEEEE
T ss_pred eeccCCCcccCCCceEEEcC------------------------------------CCCEEEEecCCCccccccccceEE
Confidence 331 1 334567788877 67766655433 34555
Q ss_pred EEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEE-EeeC
Q 018858 209 INIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLI-SGGN 287 (349)
Q Consensus 209 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~-s~~~ 287 (349)
++... +. ..+.......+.|+|+ |+++.|+ +-+.
T Consensus 120 ~~~~~-----------------------------------------~~-~~~~~~~~~pNGi~~s---~dg~~lyv~ds~ 154 (246)
T PF08450_consen 120 IDPDG-----------------------------------------KV-TVVADGLGFPNGIAFS---PDGKTLYVADSF 154 (246)
T ss_dssp EETTS-----------------------------------------EE-EEEEEEESSEEEEEEE---TTSSEEEEEETT
T ss_pred ECCCC-----------------------------------------eE-EEEecCcccccceEEC---Ccchheeecccc
Confidence 55541 11 1111123456899999 8988765 5567
Q ss_pred CCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 288 DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 288 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.+.|+.|++........ ....+.......+..-.+++.+ +|++.++.-..+.|.+++-
T Consensus 155 ~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~g~pDG~~vD~-~G~l~va~~~~~~I~~~~p 212 (246)
T PF08450_consen 155 NGRIWRFDLDADGGELS--NRRVFIDFPGGPGYPDGLAVDS-DGNLWVADWGGGRIVVFDP 212 (246)
T ss_dssp TTEEEEEEEETTTCCEE--EEEEEEE-SSSSCEEEEEEEBT-TS-EEEEEETTTEEEEEET
T ss_pred cceeEEEecccccccee--eeeeEEEcCCCCcCCCcceEcC-CCCEEEEEcCCCEEEEECC
Confidence 78899999875422000 0012222222223577888877 7776666667788888763
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.00017 Score=60.88 Aligned_cols=121 Identities=18% Similarity=0.255 Sum_probs=75.9
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEEccCCCccc----------------------------------------ceeec
Q 018858 60 PVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWR----------------------------------------PLESY 99 (349)
Q Consensus 60 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----------------------------------------~~~~~ 99 (349)
.|+.+.|.++..-|+++...|.|.+|.+...+... ++..+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 47888899888889999999999888765321110 11112
Q ss_pred cCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceecc-------ccccceeEEEEccCCCCCCCCCCCCCCcc
Q 018858 100 NYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA-------GHSSICSSVQFIPWKPWEGLPENNGNAGQ 172 (349)
Q Consensus 100 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 172 (349)
....++|++++.+ +=.++|.|.++|.+.|.|+|....+..-.. .....++++.|.-
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~v---------------- 145 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSV---------------- 145 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEE----------------
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEE----------------
Confidence 2335678888886 445999999999999999998877654220 1223456666653
Q ss_pred ccCCceeEEeecCcccccCCCC---cEEEEEcCCCeEEEEEcc
Q 018858 173 CYNPAFVHAIAIPDADMLDKTN---KICVVAKGDGVVDVINIE 212 (349)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~dg~i~i~d~~ 212 (349)
+.+ ..++ -.|++|+..|.+.+|.+.
T Consensus 146 --------------m~~-~~D~ySSi~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 146 --------------MTL-GGDGYSSICLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp --------------EE--TTSSSEEEEEEEEETTSEEEEEEEE
T ss_pred --------------Eec-CCCcccceEEEEEeCCCCEEEEEEe
Confidence 111 1122 578899999999999885
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.00013 Score=58.02 Aligned_cols=99 Identities=11% Similarity=0.092 Sum_probs=68.4
Q ss_pred EEEecCCCceEEEeCC-----CCcEEEEECC-CCcEEEEeecCCCCeEEEEEecCCCEEEEEeC-------CC-------
Q 018858 21 CIASRDRPGFVASSGE-----DGCICWFDLR-SKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS-------GK------- 80 (349)
Q Consensus 21 ~~~~~~~~~~l~t~~~-----dg~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------dg------- 80 (349)
-.|+++ |++|++.-. .|.|-|||.. ..+.+.++..|.-....+.+.|+++.|+++.. .|
T Consensus 56 g~fs~d-G~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~ 134 (305)
T PF07433_consen 56 GVFSPD-GRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLD 134 (305)
T ss_pred EEEcCC-CCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChh
Confidence 468998 888887643 4889999998 56678888888877888999999988877642 12
Q ss_pred ----eEEEEEccCCCcccceeec--cCcccceEEEEEccCCCEEEEE
Q 018858 81 ----EVKSFDVHMPASWRPLESY--NYNKEEINQIVCNPKSSFLACA 121 (349)
Q Consensus 81 ----~i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~ 121 (349)
.+...|..+++...... + ..|...+..+++.++|..++..
T Consensus 135 tM~psL~~ld~~sG~ll~q~~-Lp~~~~~lSiRHLa~~~~G~V~~a~ 180 (305)
T PF07433_consen 135 TMQPSLVYLDARSGALLEQVE-LPPDLHQLSIRHLAVDGDGTVAFAM 180 (305)
T ss_pred hcCCceEEEecCCCceeeeee-cCccccccceeeEEecCCCcEEEEE
Confidence 34445555554322211 2 2355678889998887655443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.56 E-value=6.2e-05 Score=69.16 Aligned_cols=228 Identities=13% Similarity=0.135 Sum_probs=129.0
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceE
Q 018858 58 NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL 137 (349)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 137 (349)
...|.++.|..+.+.++.+...|.|.+-|.++.. ...... -...|.+++|+||++.++..+..+++.+-+ .+..+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~-~eivg~---vd~GI~aaswS~Dee~l~liT~~~tll~mT-~~f~~ 142 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLE-LEIVGN---VDNGISAASWSPDEELLALITGRQTLLFMT-KDFEP 142 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccc-eeeeee---ccCceEEEeecCCCcEEEEEeCCcEEEEEe-ccccc
Confidence 3589999999999999999999999999887642 222222 257899999999999999888877776544 33333
Q ss_pred eceecc----ccccceeEEEEccCCC-CCCCCCCCCCCccc----------cCCceeEEeecCcccccCCCCcEEEEE--
Q 018858 138 YKSLRA----GHSSICSSVQFIPWKP-WEGLPENNGNAGQC----------YNPAFVHAIAIPDADMLDKTNKICVVA-- 200 (349)
Q Consensus 138 ~~~~~~----~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~~~-- 200 (349)
+...+. ...+..-.+.|-.... +-++ .+.....+. .....-.++.|.. +|.++++.
T Consensus 143 i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs-~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg------Dg~~fAVs~~ 215 (1265)
T KOG1920|consen 143 IAEKPLDADDERKSKFVNVGWGRKETQFRGS-EGRQAARQKIEKEKALEQIEQDDHKTSISWRG------DGEYFAVSFV 215 (1265)
T ss_pred hhccccccccccccccceecccccceeeecc-hhhhcccccccccccccchhhccCCceEEEcc------CCcEEEEEEE
Confidence 222110 0111222222222100 0000 000000000 0111123355544 78888873
Q ss_pred ---cCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecC
Q 018858 201 ---KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGE 277 (349)
Q Consensus 201 ---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~ 277 (349)
.....|++||-+. . +-..-....+.=.+++|- |
T Consensus 216 ~~~~~~RkirV~drEg-~----------------------------------------Lns~se~~~~l~~~LsWk---P 251 (1265)
T KOG1920|consen 216 ESETGTRKIRVYDREG-A----------------------------------------LNSTSEPVEGLQHSLSWK---P 251 (1265)
T ss_pred eccCCceeEEEecccc-h----------------------------------------hhcccCcccccccceeec---C
Confidence 2337899998772 1 111111112223467787 7
Q ss_pred CccEEEEee---CCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEE---eeCCCeEEEeeC
Q 018858 278 RGKYLISGG---NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVV---CDTSKVVKVYSI 348 (349)
Q Consensus 278 ~~~~l~s~~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~---~~~dg~i~iw~~ 348 (349)
.|..+++-. .|+.|.+|.-+....- ...........++..++|+. ++..|++ ......|++|-+
T Consensus 252 sgs~iA~iq~~~sd~~IvffErNGL~hg------~f~l~~p~de~~ve~L~Wns-~sdiLAv~~~~~e~~~v~lwt~ 321 (1265)
T KOG1920|consen 252 SGSLIAAIQCKTSDSDIVFFERNGLRHG------EFVLPFPLDEKEVEELAWNS-NSDILAVVTSNLENSLVQLWTT 321 (1265)
T ss_pred CCCeEeeeeecCCCCcEEEEecCCcccc------ccccCCcccccchheeeecC-CCCceeeeecccccceEEEEEe
Confidence 777777653 4567888886653211 12212222334489999988 7778888 445566999964
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00035 Score=57.96 Aligned_cols=226 Identities=19% Similarity=0.184 Sum_probs=120.7
Q ss_pred CcEEEEECCCCcEEEEeec-CCCCeEEEEE---ec----CCCEEEEEeC---------C-CeEEEEEccCC----Ccccc
Q 018858 38 GCICWFDLRSKDVQLVTDV-GNGPVTSLCF---KS----GNEDIIYVSS---------G-KEVKSFDVHMP----ASWRP 95 (349)
Q Consensus 38 g~i~vwd~~~~~~~~~~~~-~~~~v~~~~~---~~----~~~~l~~~~~---------d-g~i~iwd~~~~----~~~~~ 95 (349)
..|++.|..+.+.+..+.- ..+.+.+++. .. ...+|++|+. . |.|.++++... ...+.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 3578888877777655543 2344554443 22 2467777653 2 88999999873 12233
Q ss_pred eeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCce-EeceeccccccceeEEEEccCCCCCCCCCCCCCCcccc
Q 018858 96 LESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC-LYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCY 174 (349)
Q Consensus 96 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (349)
+.... .+++|++++-- ++. |+++. ++.|.+|++...+ ....-.......+.++..
T Consensus 82 i~~~~-~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~-------------------- 137 (321)
T PF03178_consen 82 IHSTE-VKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV-------------------- 137 (321)
T ss_dssp EEEEE-ESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--------------------
T ss_pred EEEEe-ecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEec--------------------
Confidence 32222 35778888766 344 54443 3689999998776 333322012223444443
Q ss_pred CCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceee
Q 018858 175 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRL 254 (349)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (349)
.++++++|.....+.++..+.. ....
T Consensus 138 ------------------~~~~I~vgD~~~sv~~~~~~~~------------------------------------~~~l 163 (321)
T PF03178_consen 138 ------------------FKNYILVGDAMKSVSLLRYDEE------------------------------------NNKL 163 (321)
T ss_dssp ------------------ETTEEEEEESSSSEEEEEEETT------------------------------------TE-E
T ss_pred ------------------cccEEEEEEcccCEEEEEEEcc------------------------------------CCEE
Confidence 3568899988888888765531 0011
Q ss_pred eeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceeccccccee-eeccccccceEEE---EeecC-
Q 018858 255 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLL-IKNINLNKKVNWL---CTTPT- 329 (349)
Q Consensus 255 ~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~---~~~~~- 329 (349)
..+.. ......++++.+- ++++.++.+..+|.+.++...............+. .........|+++ ...|.
T Consensus 164 ~~va~-d~~~~~v~~~~~l---~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~ 239 (321)
T PF03178_consen 164 ILVAR-DYQPRWVTAAEFL---VDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRS 239 (321)
T ss_dssp EEEEE-ESS-BEEEEEEEE----SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--S
T ss_pred EEEEe-cCCCccEEEEEEe---cCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecC
Confidence 11111 1124457888877 56679999999999999998742211111100111 1222244567777 44441
Q ss_pred -CCC-----cEEEeeCCCeEEE
Q 018858 330 -ESE-----NLVVCDTSKVVKV 345 (349)
Q Consensus 330 -~~~-----~l~~~~~dg~i~i 345 (349)
+.+ .++-++.+|.|.+
T Consensus 240 ~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 240 GSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp SSS-TTEEEEEEEEETTS-EEE
T ss_pred CCCcccccceEEEEecCCEEEE
Confidence 222 3778888988873
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00013 Score=61.25 Aligned_cols=93 Identities=13% Similarity=0.112 Sum_probs=56.8
Q ss_pred CCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeec-----cCc---------
Q 018858 37 DGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESY-----NYN--------- 102 (349)
Q Consensus 37 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~--------- 102 (349)
.+.+.++|+++++....... ...+....|+|+|+.++... ++.|.+++..++...+....- .+-
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv 99 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEV 99 (353)
T ss_dssp EEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHT
T ss_pred ceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccc
Confidence 46799999998775443332 56788899999999998887 678999987665322111100 000
Q ss_pred ccceEEEEEccCCCEEEEEcC-CCcEEEEE
Q 018858 103 KEEINQIVCNPKSSFLACADD-GGDVKIID 131 (349)
Q Consensus 103 ~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d 131 (349)
-+.-..+-|+||+++||.... +..|..+.
T Consensus 100 ~~~~~~~~WSpd~~~la~~~~d~~~v~~~~ 129 (353)
T PF00930_consen 100 FDRRSAVWWSPDSKYLAFLRFDEREVPEYP 129 (353)
T ss_dssp SSSSBSEEE-TTSSEEEEEEEE-TTS-EEE
T ss_pred cccccceEECCCCCEEEEEEECCcCCceEE
Confidence 012356889999999987653 33444443
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00064 Score=56.01 Aligned_cols=201 Identities=13% Similarity=0.092 Sum_probs=93.1
Q ss_pred ccCCCCeeeeCCceeeeEE-----EEecCCCceEEEeCCCC--cEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEE
Q 018858 3 DAEAKPRRLRGHKATATCC-----IASRDRPGFVASSGEDG--CICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIY 75 (349)
Q Consensus 3 ~~~~~~~~l~~h~~~i~~~-----~~~~~~~~~l~t~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 75 (349)
.|+..+.+|..+...-..+ +|.+++.++|+.+..|| .+.+-|+.+++..+...+.........++|+.+.++.
T Consensus 18 ~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Y 97 (386)
T PF14583_consen 18 DTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYY 97 (386)
T ss_dssp TT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEE
T ss_pred CCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEE
Confidence 3556666676443333223 45677445566665555 5667788888876655543222334567788888877
Q ss_pred EeCCCeEEEEEccCCCcccceeeccCcccceEEEEEc--cCCCEEEEEcC----------------------CCcEEEEE
Q 018858 76 VSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCN--PKSSFLACADD----------------------GGDVKIID 131 (349)
Q Consensus 76 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~----------------------dg~i~i~d 131 (349)
......|.-.|+++.+. +.+...+ +..+-...|. .++..++-.-. ...|.-.|
T Consensus 98 v~~~~~l~~vdL~T~e~-~~vy~~p--~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~id 174 (386)
T PF14583_consen 98 VKNGRSLRRVDLDTLEE-RVVYEVP--DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTID 174 (386)
T ss_dssp EETTTEEEEEETTT--E-EEEEE----TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEE
T ss_pred EECCCeEEEEECCcCcE-EEEEECC--cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEE
Confidence 76677899999988653 2333332 3444344553 34444432111 12345556
Q ss_pred cCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcC---CCe-EE
Q 018858 132 IRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG---DGV-VD 207 (349)
Q Consensus 132 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~-i~ 207 (349)
+++++....+. ....+..+.|+|. +...++-+-+ +.. -|
T Consensus 175 l~tG~~~~v~~--~~~wlgH~~fsP~-----------------------------------dp~li~fCHEGpw~~Vd~R 217 (386)
T PF14583_consen 175 LKTGERKVVFE--DTDWLGHVQFSPT-----------------------------------DPTLIMFCHEGPWDLVDQR 217 (386)
T ss_dssp TTT--EEEEEE--ESS-EEEEEEETT-----------------------------------EEEEEEEEE-S-TTTSS-S
T ss_pred CCCCceeEEEe--cCccccCcccCCC-----------------------------------CCCEEEEeccCCcceeceE
Confidence 66666544443 4455667777773 5555655432 221 25
Q ss_pred EEEccC--ceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 208 VINIES--ELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 208 i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
||-++. ..............+..--|.|||..+...
T Consensus 218 iW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~ 255 (386)
T PF14583_consen 218 IWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYD 255 (386)
T ss_dssp EEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEE
T ss_pred EEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEE
Confidence 555543 222222222333445566799999988864
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.6e-06 Score=72.54 Aligned_cols=110 Identities=13% Similarity=0.148 Sum_probs=84.8
Q ss_pred EEEEEecCCCEEEEEeC----CCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceE
Q 018858 62 TSLCFKSGNEDIIYVSS----GKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL 137 (349)
Q Consensus 62 ~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 137 (349)
+-..|+|...++++++. .|+|.||- ++|+....+ +++ -.+++++|+|..-.|+.|=.-|.+.+|...+.+.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V-t~P---~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ 93 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV-TYP---VHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET 93 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc-ccc---eehhhhccChHHHHHhhccccceeEEEecCCcee
Confidence 34579999999888763 58899884 444322221 122 3467799999988888888899999999876665
Q ss_pred eceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC
Q 018858 138 YKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 213 (349)
Q Consensus 138 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 213 (349)
..... .|..++..+.|++ +|..++++..-|.+.+|.+.-
T Consensus 94 htv~~-th~a~i~~l~wS~------------------------------------~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 94 HTVVE-THPAPIQGLDWSH------------------------------------DGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred eeecc-CCCCCceeEEecC------------------------------------CCCeEEEcCCCceeEEEEeee
Confidence 44444 7999999999999 899999999999999998873
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00045 Score=59.16 Aligned_cols=149 Identities=12% Similarity=0.137 Sum_probs=82.3
Q ss_pred eeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 018858 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVH 88 (349)
Q Consensus 9 ~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 88 (349)
+.+....-....+.++|+ +++++.+ .||...|+.....+.... +.-...+|.+.++ +|+-...+.|.|+.--
T Consensus 26 k~lg~~~~~p~~ls~npn-gr~v~V~-g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~ 97 (443)
T PF04053_consen 26 KELGSCEIYPQSLSHNPN-GRFVLVC-GDGEYEIYTALAWRNKAF-----GSGLSFVWSSRNR-YAVLESSSTIKIYKNF 97 (443)
T ss_dssp EEEEE-SS--SEEEE-TT-SSEEEEE-ETTEEEEEETTTTEEEEE-----EE-SEEEE-TSSE-EEEE-TTS-EEEEETT
T ss_pred ccCCCCCcCCeeEEECCC-CCEEEEE-cCCEEEEEEccCCccccc-----CceeEEEEecCcc-EEEEECCCeEEEEEcC
Confidence 344444455788999998 7887774 478888888544443322 2334577888554 6666668889996322
Q ss_pred CCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCC
Q 018858 89 MPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNG 168 (349)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 168 (349)
+....+.+.. ...+..+-. |..|...+.+ .|.+||..+++.++++. . . +|..+.|++
T Consensus 98 ~~~~~k~i~~----~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~-v-~-~vk~V~Ws~------------ 154 (443)
T PF04053_consen 98 KNEVVKSIKL----PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRID-V-S-AVKYVIWSD------------ 154 (443)
T ss_dssp EE-TT---------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEES-S---E-EEEEE-T------------
T ss_pred ccccceEEcC----CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEe-c-C-CCcEEEEEC------------
Confidence 2111112211 112333332 7777766554 79999999999999887 2 2 389999999
Q ss_pred CCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC
Q 018858 169 NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 213 (349)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 213 (349)
++.+++..+.+ .+.+++.+.
T Consensus 155 ------------------------~g~~val~t~~-~i~il~~~~ 174 (443)
T PF04053_consen 155 ------------------------DGELVALVTKD-SIYILKYNL 174 (443)
T ss_dssp ------------------------TSSEEEEE-S--SEEEEEE-H
T ss_pred ------------------------CCCEEEEEeCC-eEEEEEecc
Confidence 78888888765 566766553
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.0008 Score=54.55 Aligned_cols=219 Identities=14% Similarity=0.094 Sum_probs=118.6
Q ss_pred CceEEEeCCCCcEEEEECCC-CcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCccccee---------
Q 018858 28 PGFVASSGEDGCICWFDLRS-KDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLE--------- 97 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------- 97 (349)
++.|+.|..+| +.+++... .+..... +...|..+...|+-+.+++-+ |+.+.++++..-.......
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence 67899998888 99999833 3333322 233499999999888777665 5999999987533222100
Q ss_pred ---eccCcccceEEEE--EccCC-CEEEEEcCCCcEEEEEcCCc-----eEeceeccccccceeEEEEccCCCCCCCCCC
Q 018858 98 ---SYNYNKEEINQIV--CNPKS-SFLACADDGGDVKIIDIRQH-----CLYKSLRAGHSSICSSVQFIPWKPWEGLPEN 166 (349)
Q Consensus 98 ---~~~~~~~~v~~~~--~~~~~-~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 166 (349)
.. .....+...+ -...+ ..|+++ ....|.+|..... +..+++. -...+..++|.+
T Consensus 83 ~~~~~-~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~--lp~~~~~i~~~~---------- 148 (275)
T PF00780_consen 83 LPTKL-PETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEIS--LPDPPSSIAFLG---------- 148 (275)
T ss_pred ccccc-cccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEE--cCCCcEEEEEeC----------
Confidence 11 1123344444 11233 344444 4458888887643 3445555 456788888865
Q ss_pred CCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCC----------Cccceeeeecc
Q 018858 167 NGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK----------PLKGSQSTSKV 236 (349)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----------~~~~~~~~~~~ 236 (349)
+.+++|..++ ..+.|+.++........... .....+.--++
T Consensus 149 ----------------------------~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (275)
T PF00780_consen 149 ----------------------------NKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSD 199 (275)
T ss_pred ----------------------------CEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCC
Confidence 5677776544 77888886544332211111 11112222233
Q ss_pred ccEEEEeeeeeecCceeeeee--eeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCc
Q 018858 237 NIRDAEMEILDQSGGKRLHLD--YSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ 300 (349)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 300 (349)
+.++++...........+... ..+.- ...+..+.+. ..||+..+. +.|.||++.+++
T Consensus 200 ~e~Ll~~~~~g~fv~~~G~~~r~~~i~W-~~~p~~~~~~-----~pyli~~~~-~~iEV~~~~~~~ 258 (275)
T PF00780_consen 200 NEFLLCYDNIGVFVNKNGEPSRKSTIQW-SSAPQSVAYS-----SPYLIAFSS-NSIEVRSLETGE 258 (275)
T ss_pred ceEEEEecceEEEEcCCCCcCcccEEEc-CCchhEEEEE-----CCEEEEECC-CEEEEEECcCCc
Confidence 455553211111111111111 11111 1244566654 347777665 559999999983
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.9e-05 Score=67.09 Aligned_cols=118 Identities=12% Similarity=0.137 Sum_probs=87.7
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceE
Q 018858 58 NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL 137 (349)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 137 (349)
...|.--+++..+++++.|+..|.+++|+-..+...+. + ..+-...+.....+++..++|.|+..|.|.++-+....+
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~-~-~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL-K-NEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcc-c-ccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC
Confidence 34455556677899999999999999999876542221 1 111234566677888889999999999999998875322
Q ss_pred -----eceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEcc
Q 018858 138 -----YKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE 212 (349)
Q Consensus 138 -----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 212 (349)
+......|...|++++|++ ++..+.+|...|+|..-.+.
T Consensus 111 ~~~~~~t~~d~~~~~rVTal~Ws~------------------------------------~~~k~ysGD~~Gkv~~~~L~ 154 (726)
T KOG3621|consen 111 RDLDYVTPCDKSHKCRVTALEWSK------------------------------------NGMKLYSGDSQGKVVLTELD 154 (726)
T ss_pred CcceeeccccccCCceEEEEEecc------------------------------------cccEEeecCCCceEEEEEec
Confidence 1222224678899999999 89999999999999988887
Q ss_pred C
Q 018858 213 S 213 (349)
Q Consensus 213 ~ 213 (349)
+
T Consensus 155 s 155 (726)
T KOG3621|consen 155 S 155 (726)
T ss_pred h
Confidence 5
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0012 Score=51.83 Aligned_cols=215 Identities=10% Similarity=0.061 Sum_probs=111.2
Q ss_pred EeecCCCCeEEEEEecCCCEEE-EEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEE
Q 018858 53 VTDVGNGPVTSLCFKSGNEDII-YVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIID 131 (349)
Q Consensus 53 ~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d 131 (349)
.+.+-...+..++|.|+.+.|+ +....+.|..++.+ ++..+.+. +.+ .+....+++..++.++++.-.++.+.+++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~-l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIP-LDG-FGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE--SS--SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEe-CCC-CCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 4445556699999999866554 55566788877864 44333332 222 25678888888887777776789999998
Q ss_pred cCCce------Eeceec----cccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEc
Q 018858 132 IRQHC------LYKSLR----AGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK 201 (349)
Q Consensus 132 ~~~~~------~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (349)
+.... ....+. ..++..+..++|+| .++.|+++-
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~------------------------------------~~~~L~v~k 136 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDP------------------------------------KTNRLFVAK 136 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEET------------------------------------TTTEEEEEE
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcC------------------------------------CCCEEEEEe
Confidence 84211 111221 02345578888888 556666666
Q ss_pred CCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccE
Q 018858 202 GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKY 281 (349)
Q Consensus 202 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~ 281 (349)
...-..+|.++... .+..+. ................+.++.++| ..+.+
T Consensus 137 E~~P~~l~~~~~~~--------------------~~~~~~---------~~~~~~~~~~~~~~~d~S~l~~~p--~t~~l 185 (248)
T PF06977_consen 137 ERKPKRLYEVNGFP--------------------GGFDLF---------VSDDQDLDDDKLFVRDLSGLSYDP--RTGHL 185 (248)
T ss_dssp ESSSEEEEEEESTT---------------------SS--E---------EEE-HHHH-HT--SS---EEEEET--TTTEE
T ss_pred CCCChhhEEEcccc--------------------Ccccee---------eccccccccccceeccccceEEcC--CCCeE
Confidence 66666677666410 000000 000000000112334578999996 56778
Q ss_pred EEEeeCCCeEEEEecCCCcceecccccceeeeccccc------cceEEEEeecCCCCcEEEeeCCCeEEEe
Q 018858 282 LISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLN------KKVNWLCTTPTESENLVVCDTSKVVKVY 346 (349)
Q Consensus 282 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~~l~~~~~dg~i~iw 346 (349)
++-+.+...|..+|.... .. ..+....+.. ...-.|++.+ +| .|+..+.-+..++|
T Consensus 186 liLS~es~~l~~~d~~G~-~~------~~~~L~~g~~gl~~~~~QpEGIa~d~-~G-~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 186 LILSDESRLLLELDRQGR-VV------SSLSLDRGFHGLSKDIPQPEGIAFDP-DG-NLYIVSEPNLFYRF 247 (248)
T ss_dssp EEEETTTTEEEEE-TT---EE------EEEE-STTGGG-SS---SEEEEEE-T-T---EEEEETTTEEEEE
T ss_pred EEEECCCCeEEEECCCCC-EE------EEEEeCCcccCcccccCCccEEEECC-CC-CEEEEcCCceEEEe
Confidence 888888899999995442 11 1111222211 2467889987 77 57777777777665
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0024 Score=54.71 Aligned_cols=48 Identities=13% Similarity=0.285 Sum_probs=37.7
Q ss_pred cEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 018858 39 CICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVH 88 (349)
Q Consensus 39 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 88 (349)
.|.+|+.. |+++..+.-..+.+.++.|+.+. .|+....||.++++|+.
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC
Confidence 48888865 66676666555899999998754 56677789999999986
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.23 E-value=8.9e-06 Score=69.29 Aligned_cols=94 Identities=13% Similarity=0.113 Sum_probs=77.3
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEccCCCccc
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVT-SLCFKSGNEDIIYVSSGKEVKSFDVHMPASWR 94 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 94 (349)
-.|.-+.|+|. ..++|++..+|.+.+..+. .+.+++++.|+.+++ +++|.|+|+.||+|-.||+|++.|++++....
T Consensus 21 ~~i~~~ewnP~-~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNPK-MDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcCc-cchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 45777899998 8999999999999999988 777899998888888 99999999999999999999999999875443
Q ss_pred ceeeccCcccceEEEEEcc
Q 018858 95 PLESYNYNKEEINQIVCNP 113 (349)
Q Consensus 95 ~~~~~~~~~~~v~~~~~~~ 113 (349)
.. .......|.++.|.+
T Consensus 99 ~~--~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SF--LFSVETDISKGIWDR 115 (665)
T ss_pred cc--ccccccchheeeccc
Confidence 32 111245677777764
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00084 Score=58.84 Aligned_cols=80 Identities=16% Similarity=0.166 Sum_probs=51.0
Q ss_pred cceEEEEEeeecCCccEEEEee-CCCeEEEEecCCCcceecc--cccceeeeccccccceEEEEeecCCCCcEEEeeCCC
Q 018858 265 AAASCVAFSMFGERGKYLISGG-NDKLVKVWDCSRFQGVQTS--INNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSK 341 (349)
Q Consensus 265 ~~i~~i~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 341 (349)
.....+.++ |||+++++++ .+.+|.|.|+.+.+..... .....+.....-.......+|.+ +|+...+.--|.
T Consensus 321 KsPHGV~vS---PDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg-~G~aytslf~ds 396 (635)
T PRK02888 321 KNPHGVNTS---PDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDG-RGNAYTTLFLDS 396 (635)
T ss_pred CCccceEEC---CCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECC-CCCEEEeEeecc
Confidence 346788999 8999887765 5899999999986532110 00011111111233344557766 676666678999
Q ss_pred eEEEeeC
Q 018858 342 VVKVYSI 348 (349)
Q Consensus 342 ~i~iw~~ 348 (349)
.|..|++
T Consensus 397 qv~kwn~ 403 (635)
T PRK02888 397 QIVKWNI 403 (635)
T ss_pred eeEEEeh
Confidence 9999996
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.3e-05 Score=63.15 Aligned_cols=94 Identities=17% Similarity=0.201 Sum_probs=75.1
Q ss_pred EEEEEccCCCcccceeeccCcccceEEEEEccCCC-EEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCC
Q 018858 82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSS-FLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPW 160 (349)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 160 (349)
+++.+-.+. +....+..+...|..++|+|..+ ++..++.+..|+|.|+++..++..+. .+ ..+++++|.-+
T Consensus 175 v~~l~~~~f---kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~-a~-~~~wSC~wDld--- 246 (463)
T KOG1645|consen 175 VQKLESHDF---KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI-AY-NQIWSCCWDLD--- 246 (463)
T ss_pred eEEeccCCc---chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehee-cc-CCceeeeeccC---
Confidence 555544432 33445566778899999999876 78889999999999999999888887 44 78999999885
Q ss_pred CCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCce
Q 018858 161 EGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL 215 (349)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 215 (349)
+.+++..|...|.|.+||++..+
T Consensus 247 --------------------------------e~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 247 --------------------------------ERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred --------------------------------CcceeEEeccCceEEEEEccCCC
Confidence 56788888899999999999743
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0024 Score=54.00 Aligned_cols=114 Identities=18% Similarity=0.147 Sum_probs=73.0
Q ss_pred eeeEEEEecCCCceEEEeCCCCcEEEEECCCCcE-------------------------------------------EEE
Q 018858 17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDV-------------------------------------------QLV 53 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~-------------------------------------------~~~ 53 (349)
.|+.+.|.++ ..-|+.|...|.+.||.....+. ...
T Consensus 3 ~v~~vs~a~~-t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPE-TLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETT-TTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCC-CceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 5889999998 67788888899999986532110 011
Q ss_pred eecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccC------cccceEEEEEcc-----CC---CEEE
Q 018858 54 TDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNY------NKEEINQIVCNP-----KS---SFLA 119 (349)
Q Consensus 54 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~~~~v~~~~~~~-----~~---~~l~ 119 (349)
++...++|++++.| +=-++|.|..+|.+.|.|++.+..+.. ..+.. ....++++.|.. |+ -.++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~-~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYN-ENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEE-EEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEee-ccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 22245789999987 455899999999999999986532222 11211 234577787752 22 4678
Q ss_pred EEcCCCcEEEEEcC
Q 018858 120 CADDGGDVKIIDIR 133 (349)
Q Consensus 120 ~~~~dg~i~i~d~~ 133 (349)
+|+..|.+.+|.+.
T Consensus 160 vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 160 VGTNSGNVLTFKIL 173 (395)
T ss_dssp EEETTSEEEEEEEE
T ss_pred EEeCCCCEEEEEEe
Confidence 99999999999875
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0009 Score=60.80 Aligned_cols=124 Identities=15% Similarity=0.203 Sum_probs=83.1
Q ss_pred ceEEEe-CCCCcEEEEECCCCcEEEEeecCCCC-eEEEEEec-----CCCEEEEEeCCCeEEEEEccCCCcccce----e
Q 018858 29 GFVASS-GEDGCICWFDLRSKDVQLVTDVGNGP-VTSLCFKS-----GNEDIIYVSSGKEVKSFDVHMPASWRPL----E 97 (349)
Q Consensus 29 ~~l~t~-~~dg~i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~ 97 (349)
++|+.. .....|+-.|++.|+.+..+..+... |..++-.. .....+.|-.+..+..||.+.... +.+ .
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~-k~v~~~~k 572 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN-KLVDSQSK 572 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCC-ceeecccc
Confidence 344433 34577899999999999999887644 55543221 133456777788899999986431 111 1
Q ss_pred eccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEcc
Q 018858 98 SYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 98 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
.+ ......+|++-+.+| +||+|+.+|.||+||--..+....++ +...+|.++..+.
T Consensus 573 ~Y-~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp-~lG~pI~~iDvt~ 628 (794)
T PF08553_consen 573 QY-SSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALP-GLGDPIIGIDVTA 628 (794)
T ss_pred cc-ccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCC-CCCCCeeEEEecC
Confidence 12 123457777777665 79999999999999943333333455 6788999999998
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00079 Score=59.00 Aligned_cols=137 Identities=12% Similarity=0.032 Sum_probs=85.7
Q ss_pred CCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeC--------------------------------------
Q 018858 37 DGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS-------------------------------------- 78 (349)
Q Consensus 37 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------------------------------------- 78 (349)
.+.+.+.|.++.+....+.... ....++++|+|+++++.+.
T Consensus 214 ~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~ 292 (635)
T PRK02888 214 RSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKT 292 (635)
T ss_pred eEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEE
Confidence 4566777877777666655432 3456677788887776651
Q ss_pred --CCeEEEEEccCC--CcccceeeccCcccceEEEEEccCCCEEEEEc-CCCcEEEEEcCCceE------------ecee
Q 018858 79 --GKEVKSFDVHMP--ASWRPLESYNYNKEEINQIVCNPKSSFLACAD-DGGDVKIIDIRQHCL------------YKSL 141 (349)
Q Consensus 79 --dg~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~------------~~~~ 141 (349)
++.|.+.|..+. .....+..+.. ......+.++|||+++++++ .+.+|.++|+.+.+. ..+.
T Consensus 293 V~gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaev 371 (635)
T PRK02888 293 IGGSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEP 371 (635)
T ss_pred ECCCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEee
Confidence 234666666540 00112222221 24567899999999887655 588999999986542 2222
Q ss_pred ccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC
Q 018858 142 RAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 213 (349)
Q Consensus 142 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 213 (349)
. -.......+|.+ +|+.+.+-..|..|..|++..
T Consensus 372 e--vGlGPLHTaFDg------------------------------------~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 372 E--LGLGPLHTAFDG------------------------------------RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred c--cCCCcceEEECC------------------------------------CCCEEEeEeecceeEEEehHH
Confidence 2 122233445555 778788888999999999986
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0003 Score=60.01 Aligned_cols=111 Identities=18% Similarity=0.219 Sum_probs=67.4
Q ss_pred cEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEe---CC-CeEEEEEccCCCcccceeeccCcccceEEEEEccC
Q 018858 39 CICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVS---SG-KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK 114 (349)
Q Consensus 39 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d-g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 114 (349)
.+.+=|.+ +.....+......+..-+|+|+++.++... .. ..+.++++.+++....+. +. ..-...+|+||
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~---g~~~~P~fspD 248 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FN---GNNGAPAFSPD 248 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cC---CccCCccCCCC
Confidence 34444443 444445554556777788999998876653 22 469999999876544443 33 33445689999
Q ss_pred CCEEEE-EcCCCc--EEEEEcCCceEeceeccccccceeEEEEcc
Q 018858 115 SSFLAC-ADDGGD--VKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 115 ~~~l~~-~~~dg~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
|+.|+. ...||. |+++|+..+.. ..+. ...+.-..-.|+|
T Consensus 249 G~~l~f~~~rdg~~~iy~~dl~~~~~-~~Lt-~~~gi~~~Ps~sp 291 (425)
T COG0823 249 GSKLAFSSSRDGSPDIYLMDLDGKNL-PRLT-NGFGINTSPSWSP 291 (425)
T ss_pred CCEEEEEECCCCCccEEEEcCCCCcc-eecc-cCCccccCccCCC
Confidence 987764 455665 77778876663 3344 2222233555666
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00021 Score=60.84 Aligned_cols=144 Identities=16% Similarity=0.134 Sum_probs=83.8
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEe---CCC-CcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEe-CC
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASS---GED-GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVS-SG 79 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~---~~d-g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d 79 (349)
+...+.+..-...+..-.|+|+ +..++-. ... ..+.++++.+++....+. ..+.-...+|+|+|+.|+.+. .|
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~-~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rd 259 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPD-GKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRD 259 (425)
T ss_pred CcceeEecccCcceeccccCcC-CCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCC
Confidence 3445555555566777789998 5544422 222 469999999877644433 223334568999999987765 45
Q ss_pred C--eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcC-CCc--EEEEEcCCceEeceeccccccceeEEEE
Q 018858 80 K--EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-GGD--VKIIDIRQHCLYKSLRAGHSSICSSVQF 154 (349)
Q Consensus 80 g--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 154 (349)
| .|.+.|+..+...+ +.... +.-..-.|+|+|+.++..+. .|. |.++|++.... ..+. .....-..-.|
T Consensus 260 g~~~iy~~dl~~~~~~~-Lt~~~---gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT-~~~~~~~~p~~ 333 (425)
T COG0823 260 GSPDIYLMDLDGKNLPR-LTNGF---GINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLT-FSGGGNSNPVW 333 (425)
T ss_pred CCccEEEEcCCCCccee-cccCC---ccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEee-ccCCCCcCccC
Confidence 5 46666777654222 33322 22336689999998876554 444 66667665544 3332 12222225566
Q ss_pred cc
Q 018858 155 IP 156 (349)
Q Consensus 155 ~~ 156 (349)
+|
T Consensus 334 Sp 335 (425)
T COG0823 334 SP 335 (425)
T ss_pred CC
Confidence 66
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0051 Score=54.23 Aligned_cols=112 Identities=12% Similarity=0.071 Sum_probs=69.8
Q ss_pred ceEEEeCCCCcEEEEECCCCcEEEEeecCCCC-----eE-EEEEecCCCEEEEEe---------CCCeEEEEEccCCCcc
Q 018858 29 GFVASSGEDGCICWFDLRSKDVQLVTDVGNGP-----VT-SLCFKSGNEDIIYVS---------SGKEVKSFDVHMPASW 93 (349)
Q Consensus 29 ~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~-----v~-~~~~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~ 93 (349)
..++.++.+|.|+-+|.++++.+..+...... +. ...+. +..++.++ .++.+.-+|..+++..
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 57778888999999999999998877643321 11 11222 24455554 3578888898887654
Q ss_pred cceeeccCcc-----------------cce-EEEEEccCCCEEEEEcCCC------------------cEEEEEcCCceE
Q 018858 94 RPLESYNYNK-----------------EEI-NQIVCNPKSSFLACADDGG------------------DVKIIDIRQHCL 137 (349)
Q Consensus 94 ~~~~~~~~~~-----------------~~v-~~~~~~~~~~~l~~~~~dg------------------~i~i~d~~~~~~ 137 (349)
.......... ..+ ...++.+.+..++.++.++ .|.-+|.++++.
T Consensus 189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 4333211000 001 1234455566777777665 688899999988
Q ss_pred eceec
Q 018858 138 YKSLR 142 (349)
Q Consensus 138 ~~~~~ 142 (349)
+..++
T Consensus 269 ~W~~~ 273 (488)
T cd00216 269 KWFYQ 273 (488)
T ss_pred EEEee
Confidence 87765
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.8e-05 Score=67.54 Aligned_cols=94 Identities=13% Similarity=0.153 Sum_probs=75.3
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceE-EEEEccCCCEEEEEcCCCcEEEEEcCCceE
Q 018858 59 GPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEIN-QIVCNPKSSFLACADDGGDVKIIDIRQHCL 137 (349)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 137 (349)
..+.-+.|+|.-+.||.+..+|.|.+..+. .+.+-.++-+...++ +++|.|||+.+|+|-.||+|++.|++++..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n----~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN----WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec----cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 457789999999999999999999888876 233444443455566 999999999999999999999999998887
Q ss_pred eceeccccccceeEEEEcc
Q 018858 138 YKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 138 ~~~~~~~~~~~v~~~~~~~ 156 (349)
+..+.......|.++-|.+
T Consensus 97 l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred eeccccccccchheeeccc
Confidence 7763323566788888875
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0051 Score=51.45 Aligned_cols=126 Identities=10% Similarity=0.120 Sum_probs=62.0
Q ss_pred CceEEEeC-CCCcEEEEECCC----CcEEEEeec---CC----CCeEEEEEecCCCEEEEEeC--C----CeEEEEEccC
Q 018858 28 PGFVASSG-EDGCICWFDLRS----KDVQLVTDV---GN----GPVTSLCFKSGNEDIIYVSS--G----KEVKSFDVHM 89 (349)
Q Consensus 28 ~~~l~t~~-~dg~i~vwd~~~----~~~~~~~~~---~~----~~v~~~~~~~~~~~l~~~~~--d----g~i~iwd~~~ 89 (349)
.++|+..+ ..+.|+|.|+.+ .++.+.++. +. .....+.--|+|+.++++-. + |.+.+.|-++
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t 166 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET 166 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence 56666666 668999999873 334455542 11 22233444578888877532 2 4677777664
Q ss_pred CCcccceeeccC---cccceEEEEEccCCCEEEEEcC--------------------CCcEEEEEcCCceEeceeccccc
Q 018858 90 PASWRPLESYNY---NKEEINQIVCNPKSSFLACADD--------------------GGDVKIIDIRQHCLYKSLRAGHS 146 (349)
Q Consensus 90 ~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~--------------------dg~i~i~d~~~~~~~~~~~~~~~ 146 (349)
-+ ....... ....-..+-|.|..+.+++... ...+.+||+.+.+.++++..+..
T Consensus 167 f~---v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~ 243 (461)
T PF05694_consen 167 FE---VKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE 243 (461)
T ss_dssp -----EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred cc---ccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence 32 2222221 1223456777887777777533 34799999999999999884433
Q ss_pred c-ceeEEEEcc
Q 018858 147 S-ICSSVQFIP 156 (349)
Q Consensus 147 ~-~v~~~~~~~ 156 (349)
+ ....+.|..
T Consensus 244 g~~pLEvRflH 254 (461)
T PF05694_consen 244 GQMPLEVRFLH 254 (461)
T ss_dssp EEEEEEEEE-S
T ss_pred CCceEEEEecC
Confidence 3 355677765
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0013 Score=55.44 Aligned_cols=229 Identities=13% Similarity=0.087 Sum_probs=114.9
Q ss_pred ceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecC-----------------CCCeEEEEEecCCCEEEEEe
Q 018858 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVG-----------------NGPVTSLCFKSGNEDIIYVS 77 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~~~l~~~~ 77 (349)
...+....|+|+ ++.++-.. ++.|.+++..+++..+..... -..-..+.|||++++||...
T Consensus 42 ~~~~~~~~~sP~-g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 42 PPKLQDAKWSPD-GKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp ETTBSEEEE-SS-STEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred ccccccceeecC-CCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence 456788899999 77777665 468999998777544322111 11235688999999998754
Q ss_pred CC-C-----------------------------------eEEEEEccCCCcccce-e-eccCcccceEEEEEccCCCEEE
Q 018858 78 SG-K-----------------------------------EVKSFDVHMPASWRPL-E-SYNYNKEEINQIVCNPKSSFLA 119 (349)
Q Consensus 78 ~d-g-----------------------------------~i~iwd~~~~~~~~~~-~-~~~~~~~~v~~~~~~~~~~~l~ 119 (349)
.| . .+.|+|+.+++....- . ........+..+.|.++++.|+
T Consensus 120 ~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~ 199 (353)
T PF00930_consen 120 FDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLW 199 (353)
T ss_dssp EE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred ECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEE
Confidence 32 1 2344555544321100 0 1112245677888888887333
Q ss_pred E--EcCCC---cEEEEEcCCceEeceeccccccce---eEEEEc-cCCCCCCCCCCCCCCccccCCceeEEeecCccccc
Q 018858 120 C--ADDGG---DVKIIDIRQHCLYKSLRAGHSSIC---SSVQFI-PWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADML 190 (349)
Q Consensus 120 ~--~~~dg---~i~i~d~~~~~~~~~~~~~~~~~v---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (349)
. ..++. .+.++|..+++............+ ....|. ++
T Consensus 200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~--------------------------------- 246 (353)
T PF00930_consen 200 VQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPD--------------------------------- 246 (353)
T ss_dssp EEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTT---------------------------------
T ss_pred EEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCC---------------------------------
Confidence 2 22222 255666665543222221111111 123332 21
Q ss_pred CCCCcEEEEEcCCCe--EEEEEccCceeeeecCCCCCCcc-ceeeeeccccEEEEeeeeeecCce-------e-eeeeee
Q 018858 191 DKTNKICVVAKGDGV--VDVINIESELNISRSKSTTKPLK-GSQSTSKVNIRDAEMEILDQSGGK-------R-LHLDYS 259 (349)
Q Consensus 191 ~~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~ 259 (349)
.+.++.....+|. |.+++...+...... .....+ ..+.++++++.+...+..+..... . ......
T Consensus 247 --~~~~l~~s~~~G~~hly~~~~~~~~~~~lT--~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~ 322 (353)
T PF00930_consen 247 --GNEFLWISERDGYRHLYLYDLDGGKPRQLT--SGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKC 322 (353)
T ss_dssp --SSEEEEEEETTSSEEEEEEETTSSEEEESS---SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEE
T ss_pred --CCEEEEEEEcCCCcEEEEEcccccceeccc--cCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEe
Confidence 4455555557774 455555554433222 222334 457888888888765544221111 0 112223
Q ss_pred ecCCCcceEEEEEeeecCCccEEEEe
Q 018858 260 VGGHTAAASCVAFSMFGERGKYLISG 285 (349)
Q Consensus 260 ~~~h~~~i~~i~~~~~~~~~~~l~s~ 285 (349)
+....+.-..+.|+ |++++++-.
T Consensus 323 LT~~~~~~~~~~~S---pdg~y~v~~ 345 (353)
T PF00930_consen 323 LTCEDGDHYSASFS---PDGKYYVDT 345 (353)
T ss_dssp SSTTSSTTEEEEE----TTSSEEEEE
T ss_pred ccCCCCCceEEEEC---CCCCEEEEE
Confidence 33222222588888 888887644
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0021 Score=55.14 Aligned_cols=146 Identities=12% Similarity=0.086 Sum_probs=75.6
Q ss_pred ecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCC
Q 018858 55 DVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ 134 (349)
Q Consensus 55 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 134 (349)
......+..+.++|+|+++++++ +|.-.|+..... +... .+.....+|.+.++ +|+-.....|.++.--+
T Consensus 29 g~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~---r~k~-----~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~ 98 (443)
T PF04053_consen 29 GSCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAW---RNKA-----FGSGLSFVWSSRNR-YAVLESSSTIKIYKNFK 98 (443)
T ss_dssp EE-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTT---EEEE-----EEE-SEEEE-TSSE-EEEE-TTS-EEEEETTE
T ss_pred CCCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCC---cccc-----cCceeEEEEecCcc-EEEEECCCeEEEEEcCc
Confidence 33445578899999999998855 788888873321 1111 24456788988554 66666678899973222
Q ss_pred ceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCc
Q 018858 135 HCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE 214 (349)
Q Consensus 135 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 214 (349)
.+....++ ....+..+- .|.+|...+. +.|.+||..++
T Consensus 99 ~~~~k~i~--~~~~~~~If---------------------------------------~G~LL~~~~~-~~i~~yDw~~~ 136 (443)
T PF04053_consen 99 NEVVKSIK--LPFSVEKIF---------------------------------------GGNLLGVKSS-DFICFYDWETG 136 (443)
T ss_dssp E-TT-------SS-EEEEE----------------------------------------SSSEEEEET-TEEEEE-TTT-
T ss_pred cccceEEc--CCcccceEE---------------------------------------cCcEEEEECC-CCEEEEEhhHc
Confidence 22222333 111222221 2455666554 48999999975
Q ss_pred eeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEE
Q 018858 215 LNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 294 (349)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vw 294 (349)
..+..+.- .+|..+.|+ +++.+++-.+.+ .++|+
T Consensus 137 ----------------------------------------~~i~~i~v--~~vk~V~Ws---~~g~~val~t~~-~i~il 170 (443)
T PF04053_consen 137 ----------------------------------------KLIRRIDV--SAVKYVIWS---DDGELVALVTKD-SIYIL 170 (443)
T ss_dssp -----------------------------------------EEEEESS---E-EEEEE----TTSSEEEEE-S--SEEEE
T ss_pred ----------------------------------------ceeeEEec--CCCcEEEEE---CCCCEEEEEeCC-eEEEE
Confidence 34444432 237888888 788888877754 56676
Q ss_pred ecCC
Q 018858 295 DCSR 298 (349)
Q Consensus 295 d~~~ 298 (349)
+.+.
T Consensus 171 ~~~~ 174 (443)
T PF04053_consen 171 KYNL 174 (443)
T ss_dssp EE-H
T ss_pred Eecc
Confidence 6543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.2e-05 Score=42.78 Aligned_cols=39 Identities=31% Similarity=0.475 Sum_probs=34.6
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEE
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFD 44 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd 44 (349)
.+....+..|...|.++.|.+. +.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPD-GKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCC-CCEEEEecCCCeEEEcC
Confidence 3556788899999999999998 68999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0041 Score=53.30 Aligned_cols=193 Identities=11% Similarity=0.075 Sum_probs=98.2
Q ss_pred ccCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEe-------ecCCCCeEEEEEecCCCEEEE
Q 018858 3 DAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVT-------DVGNGPVTSLCFKSGNEDIIY 75 (349)
Q Consensus 3 ~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~ 75 (349)
..|+++.++.--.+.|.++.|+.+ ..|+.-..||.++++|+.. +....+ ......+....+..+| ++.
T Consensus 68 ~sG~ll~~i~w~~~~iv~~~wt~~--e~LvvV~~dG~v~vy~~~G-~~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivv 142 (410)
T PF04841_consen 68 SSGKLLSSIPWDSGRIVGMGWTDD--EELVVVQSDGTVRVYDLFG-EFQFSLGEEIEEEKVLECRIFAIWFYKNG--IVV 142 (410)
T ss_pred CCCCEeEEEEECCCCEEEEEECCC--CeEEEEEcCCEEEEEeCCC-ceeechhhhccccCcccccccccccCCCC--EEE
Confidence 355666666544478999999875 4566667899999999863 321111 1111222222333344 333
Q ss_pred EeCCCeEEEEE-ccCCCcccceeeccCccc------ceEE-EEEccCCCEEEEEcCCCcEEEEEcCCceEeceecccccc
Q 018858 76 VSSGKEVKSFD-VHMPASWRPLESYNYNKE------EINQ-IVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSS 147 (349)
Q Consensus 76 ~~~dg~i~iwd-~~~~~~~~~~~~~~~~~~------~v~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 147 (349)
-..++.+.+.+ .......+.+...+.... .... ..+..+....+....++.+.+.+-...+. +. ..+
T Consensus 143 Lt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~--~~~ 217 (410)
T PF04841_consen 143 LTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID--SDG 217 (410)
T ss_pred ECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc--CCC
Confidence 33444444432 221101111111110000 0000 22333344444444445555444222111 22 345
Q ss_pred ceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCc
Q 018858 148 ICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPL 227 (349)
Q Consensus 148 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 227 (349)
++..|+++| +++++|.-..+|.+.+.+..-.+............
T Consensus 218 ~i~~iavSp------------------------------------ng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~ 261 (410)
T PF04841_consen 218 PIIKIAVSP------------------------------------NGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSP 261 (410)
T ss_pred CeEEEEECC------------------------------------CCCEEEEEECCCCEEEEECcccceeEEeecCcCCC
Confidence 788888888 78999888888998888765444444444444455
Q ss_pred cceeeeeccccEEE
Q 018858 228 KGSQSTSKVNIRDA 241 (349)
Q Consensus 228 ~~~~~~~~~~~~~~ 241 (349)
...+.|.-+...++
T Consensus 262 p~~~~WCG~dav~l 275 (410)
T PF04841_consen 262 PKQMAWCGNDAVVL 275 (410)
T ss_pred CcEEEEECCCcEEE
Confidence 66777877655444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0018 Score=43.05 Aligned_cols=101 Identities=19% Similarity=0.185 Sum_probs=67.8
Q ss_pred eeEEEEec---CCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCccc
Q 018858 18 ATCCIASR---DRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWR 94 (349)
Q Consensus 18 i~~~~~~~---~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 94 (349)
|+++++.. ++.+.|+.|+.|..|++|+-+ +.+..+.. ...|+++.-... ..++.+..+|+|-+|+-.. ...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--RLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--eee
Confidence 56666654 444789999999999999843 56666664 356777766554 6799999999999997542 122
Q ss_pred ceeeccCcccceEEEEEcc---CC-CEEEEEcCCCcEE
Q 018858 95 PLESYNYNKEEINQIVCNP---KS-SFLACADDGGDVK 128 (349)
Q Consensus 95 ~~~~~~~~~~~v~~~~~~~---~~-~~l~~~~~dg~i~ 128 (349)
.++. +..+.++++.. +| ..|++|-.+|.|-
T Consensus 76 RiKS----K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKS----KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eecc----CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2222 24466666543 33 4688888888764
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0085 Score=48.86 Aligned_cols=229 Identities=14% Similarity=0.076 Sum_probs=124.4
Q ss_pred EEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeecc-
Q 018858 22 IASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYN- 100 (349)
Q Consensus 22 ~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~- 100 (349)
.|.++.+.++++--..+.|.-|+..+++. ..+. +...+.++.....+..|+++.. | +.+++.+++.....+....
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~-~p~~~~~~~~~d~~g~Lv~~~~-g-~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFP-SPGGFSSGALIDAGGRLIACEH-G-VRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEE-CCCCcccceeecCCCeEEEEcc-c-cEEEeccCCceeEEeccccC
Confidence 56676444566666678888888876653 2333 2233444444444445555442 2 5666665443322222211
Q ss_pred C-cccceEEEEEccCCCEEEEEcC-----------CCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCC
Q 018858 101 Y-NKEEINQIVCNPKSSFLACADD-----------GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNG 168 (349)
Q Consensus 101 ~-~~~~v~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 168 (349)
+ .....+.+...|+|.+.++... -|.|+.+|. .+...+.+. .+-..-+.++|+|
T Consensus 107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~-~~~~~~NGla~Sp------------ 172 (307)
T COG3386 107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLD-DDLTIPNGLAFSP------------ 172 (307)
T ss_pred CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeec-CcEEecCceEECC------------
Confidence 1 1134567788888876665433 122433343 344444444 3344456677777
Q ss_pred CCccccCCceeEEeecCcccccCCCCcEEEEEc-CCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeee
Q 018858 169 NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD 247 (349)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (349)
+++.|..+. ..+.|.-|++....
T Consensus 173 ------------------------Dg~tly~aDT~~~~i~r~~~d~~~-------------------------------- 196 (307)
T COG3386 173 ------------------------DGKTLYVADTPANRIHRYDLDPAT-------------------------------- 196 (307)
T ss_pred ------------------------CCCEEEEEeCCCCeEEEEecCccc--------------------------------
Confidence 776666654 45788888776200
Q ss_pred ecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCC-eEEEEecCCCcceecccccceeeeccccccceEEEEe
Q 018858 248 QSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDK-LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCT 326 (349)
Q Consensus 248 ~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 326 (349)
+..... ..........+..-.++.. .+|.+.+++-.+| .|.+|+.. + +++....-....+++++|
T Consensus 197 g~~~~~-~~~~~~~~~~G~PDG~~vD---adG~lw~~a~~~g~~v~~~~pd-G---------~l~~~i~lP~~~~t~~~F 262 (307)
T COG3386 197 GPIGGR-RGFVDFDEEPGLPDGMAVD---ADGNLWVAAVWGGGRVVRFNPD-G---------KLLGEIKLPVKRPTNPAF 262 (307)
T ss_pred CccCCc-ceEEEccCCCCCCCceEEe---CCCCEEEecccCCceEEEECCC-C---------cEEEEEECCCCCCccceE
Confidence 000000 1111222234556677777 7888776555554 89999998 5 455555555467788888
Q ss_pred ecCCCCcEEEee
Q 018858 327 TPTESENLVVCD 338 (349)
Q Consensus 327 ~~~~~~~l~~~~ 338 (349)
--++.+.|++.+
T Consensus 263 gG~~~~~L~iTs 274 (307)
T COG3386 263 GGPDLNTLYITS 274 (307)
T ss_pred eCCCcCEEEEEe
Confidence 655555555554
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00075 Score=61.28 Aligned_cols=139 Identities=14% Similarity=0.139 Sum_probs=87.5
Q ss_pred cCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEc
Q 018858 122 DDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK 201 (349)
Q Consensus 122 ~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (349)
.....|+-.|++.|+++..++ .+... .-..+.|+..+.. + ++...++|-
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~-~~~~~-~v~~~~p~~K~aq---------------------l--------t~e~tflGl 549 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWK-VHDDI-PVVDIAPDSKFAQ---------------------L--------TNEQTFLGL 549 (794)
T ss_pred CCCCceEEEecCCCcEEEEee-cCCCc-ceeEecccccccc---------------------c--------CCCceEEEE
Confidence 345779999999999999998 44432 2334444311110 0 223455677
Q ss_pred CCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccE
Q 018858 202 GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKY 281 (349)
Q Consensus 202 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~ 281 (349)
.+..+..||.|-.. ..++ ....+.+ ......+|++-+ .+ .+
T Consensus 550 s~n~lfriDpR~~~----------------------~k~v------------~~~~k~Y-~~~~~Fs~~aTt---~~-G~ 590 (794)
T PF08553_consen 550 SDNSLFRIDPRLSG----------------------NKLV------------DSQSKQY-SSKNNFSCFATT---ED-GY 590 (794)
T ss_pred CCCceEEeccCCCC----------------------Ccee------------ecccccc-ccCCCceEEEec---CC-ce
Confidence 78889999998521 0000 0011112 233457788776 44 58
Q ss_pred EEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCC
Q 018858 282 LISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS 340 (349)
Q Consensus 282 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 340 (349)
||.|+.+|.||+||--.. +-...+.+...+|..|+.+. ||++|++.+..
T Consensus 591 iavgs~~G~IRLyd~~g~---------~AKT~lp~lG~pI~~iDvt~-DGkwilaTc~t 639 (794)
T PF08553_consen 591 IAVGSNKGDIRLYDRLGK---------RAKTALPGLGDPIIGIDVTA-DGKWILATCKT 639 (794)
T ss_pred EEEEeCCCcEEeecccch---------hhhhcCCCCCCCeeEEEecC-CCcEEEEeecc
Confidence 999999999999994332 33335557789999999977 99887776654
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.87 E-value=6.6e-05 Score=39.64 Aligned_cols=38 Identities=24% Similarity=0.362 Sum_probs=33.6
Q ss_pred cEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEE
Q 018858 49 DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFD 86 (349)
Q Consensus 49 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 86 (349)
+....+..|...|.++.|.+.+..+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45667778889999999999999999999999999995
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0031 Score=41.98 Aligned_cols=85 Identities=16% Similarity=0.232 Sum_probs=56.1
Q ss_pred eEEEEEec---CC-CEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCce
Q 018858 61 VTSLCFKS---GN-EDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC 136 (349)
Q Consensus 61 v~~~~~~~---~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 136 (349)
|+++++.. +| +.|++|+.|..|++|+-+. .+..+.. .+.|+.++-... ..|+.+..+|+|-+|+- .+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-----~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-----IVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQ 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-----EEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeC--cc
Confidence 56666654 22 5699999999999998652 2222221 366777776655 67899999999999985 33
Q ss_pred EeceeccccccceeEEEEcc
Q 018858 137 LYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 137 ~~~~~~~~~~~~v~~~~~~~ 156 (349)
.+...+ ....+.++.+..
T Consensus 73 RlWRiK--SK~~~~~~~~~D 90 (111)
T PF14783_consen 73 RLWRIK--SKNQVTSMAFYD 90 (111)
T ss_pred eeeeec--cCCCeEEEEEEc
Confidence 344444 334466666544
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.016 Score=49.28 Aligned_cols=132 Identities=13% Similarity=0.173 Sum_probs=87.9
Q ss_pred eEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeC---CCeEEEEEccCCCcccc
Q 018858 19 TCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS---GKEVKSFDVHMPASWRP 95 (349)
Q Consensus 19 ~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~ 95 (349)
..++.++.+.+..++...+..|.+.|..+.+......... ....++++|+++.+.++.. ++.+.+.|-.+++....
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~ 155 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT 155 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence 3567777744466666667899999988777766665433 5678999999988877765 67888888876543333
Q ss_pred eeeccCcccceEEEEEccCCCEEEEEc-CCCcEEEEEcCCceEec-e---eccccccceeEEEEcc
Q 018858 96 LESYNYNKEEINQIVCNPKSSFLACAD-DGGDVKIIDIRQHCLYK-S---LRAGHSSICSSVQFIP 156 (349)
Q Consensus 96 ~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~-~---~~~~~~~~v~~~~~~~ 156 (349)
......+ ..+++.|++..++... .++.|.+.|.......+ . .. ........+.+.|
T Consensus 156 ---~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~-~~~~~P~~i~v~~ 216 (381)
T COG3391 156 ---IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLV-GVGTGPAGIAVDP 216 (381)
T ss_pred ---EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceecccccccc-ccCCCCceEEECC
Confidence 2211223 8899999998665554 78899999977665553 1 01 1223345566777
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0097 Score=53.25 Aligned_cols=103 Identities=14% Similarity=0.207 Sum_probs=59.0
Q ss_pred CceEEEeCCCC------cEEEEECCCCcEEE--EeecCCCCeEEEEEecCCCEEEEEeCC-C-----eEEEEEccCCCcc
Q 018858 28 PGFVASSGEDG------CICWFDLRSKDVQL--VTDVGNGPVTSLCFKSGNEDIIYVSSG-K-----EVKSFDVHMPASW 93 (349)
Q Consensus 28 ~~~l~t~~~dg------~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d-g-----~i~iwd~~~~~~~ 93 (349)
+.+++.||.++ .+..+|..+++... .+. ....-.+++.. ++...++|+.+ | .+..||..+++ .
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~-W 361 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ-W 361 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc-e
Confidence 56777787763 57788887765432 222 22233344444 45777888888 3 67888887654 3
Q ss_pred cceeeccCcccceEEEEEccCCCEEEEEcCCCc-----EEEEEcCCc
Q 018858 94 RPLESYNYNKEEINQIVCNPKSSFLACADDGGD-----VKIIDIRQH 135 (349)
Q Consensus 94 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-----i~i~d~~~~ 135 (349)
..+..+...........+ +|...|+|+.||. +-.||.++.
T Consensus 362 ~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~ 406 (571)
T KOG4441|consen 362 TPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTN 406 (571)
T ss_pred eccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCC
Confidence 333333222222222222 5778889988864 666776543
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.026 Score=49.88 Aligned_cols=111 Identities=8% Similarity=0.056 Sum_probs=68.0
Q ss_pred ceEEEeCCCCcEEEEECCCCcEEEEeecCCC------CeE--EEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeecc
Q 018858 29 GFVASSGEDGCICWFDLRSKDVQLVTDVGNG------PVT--SLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYN 100 (349)
Q Consensus 29 ~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~------~v~--~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 100 (349)
..++.++.++.++-.|..+++.+..++.... .+. .+... ++..++.++.++.|.-+|.++++.......-.
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~ 140 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNND 140 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence 4566777789999999999998877654322 110 01111 22678888889999999999886543332211
Q ss_pred C--cccce-EEEEEccCCCEEEEEc---------CCCcEEEEEcCCceEeceec
Q 018858 101 Y--NKEEI-NQIVCNPKSSFLACAD---------DGGDVKIIDIRQHCLYKSLR 142 (349)
Q Consensus 101 ~--~~~~v-~~~~~~~~~~~l~~~~---------~dg~i~i~d~~~~~~~~~~~ 142 (349)
. ....+ ....+. +..++.++ .++.+..+|..+++.+..++
T Consensus 141 ~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~ 192 (488)
T cd00216 141 QVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFY 192 (488)
T ss_pred CcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEee
Confidence 0 00001 111121 23454543 36789999999999888776
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.019 Score=47.76 Aligned_cols=143 Identities=15% Similarity=0.266 Sum_probs=87.4
Q ss_pred CceEEEeCC----------CCcEEEEECCCC-----cE--EEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 018858 28 PGFVASSGE----------DGCICWFDLRSK-----DV--QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP 90 (349)
Q Consensus 28 ~~~l~t~~~----------dg~i~vwd~~~~-----~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 90 (349)
..+++.|.. .|.|.++++... +. +... ...++|++++-. +.+|+++. .+.|.+|++...
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~--~~~lv~~~-g~~l~v~~l~~~ 117 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHST-EVKGPVTAICSF--NGRLVVAV-GNKLYVYDLDNS 117 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEE-EESS-EEEEEEE--TTEEEEEE-TTEEEEEEEETT
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEE-eecCcceEhhhh--CCEEEEee-cCEEEEEEccCc
Confidence 467776642 289999999874 22 2222 246889998766 33455554 578999999876
Q ss_pred CcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCC-ceEecee-ccccccceeEEEEccCCCCCCCCCCCC
Q 018858 91 ASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ-HCLYKSL-RAGHSSICSSVQFIPWKPWEGLPENNG 168 (349)
Q Consensus 91 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~ 168 (349)
+.......+.. ...+.++... ++++++|...+.+.++..+. ...+..+ +......++++.|.+
T Consensus 118 ~~l~~~~~~~~-~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~------------ 182 (321)
T PF03178_consen 118 KTLLKKAFYDS-PFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLV------------ 182 (321)
T ss_dssp SSEEEEEEE-B-SSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-------------
T ss_pred ccchhhheecc-eEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEec------------
Confidence 52233333322 1245555544 66999999888888885542 2222222 212344577777775
Q ss_pred CCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC
Q 018858 169 NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 213 (349)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 213 (349)
+++.++++..+|.+.++....
T Consensus 183 ------------------------d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 183 ------------------------DEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp ------------------------SSSEEEEEETTSEEEEEEE-S
T ss_pred ------------------------CCcEEEEEcCCCeEEEEEECC
Confidence 346899999999999998863
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.017 Score=47.05 Aligned_cols=103 Identities=13% Similarity=0.158 Sum_probs=67.0
Q ss_pred CcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEe----------CCCeEEEEEccCCCcccceeeccCcc----
Q 018858 38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVS----------SGKEVKSFDVHMPASWRPLESYNYNK---- 103 (349)
Q Consensus 38 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~---- 103 (349)
+.++++|.++++.+..+... -.-.+..+|+++.+++++ ..-.|.+||..+......+..-..+.
T Consensus 17 ~rv~viD~d~~k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 57999999999987776642 233466899999988754 23479999998754333322221101
Q ss_pred cceEEEEEccCCCEEEEEc--CCCcEEEEEcCCceEeceec
Q 018858 104 EEINQIVCNPKSSFLACAD--DGGDVKIIDIRQHCLYKSLR 142 (349)
Q Consensus 104 ~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~ 142 (349)
.....++++.+++++++.. ---.|.|.|+..++.+.++.
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~ 135 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEID 135 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeec
Confidence 1223467888888877653 34568999999988887776
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.028 Score=48.64 Aligned_cols=116 Identities=13% Similarity=0.099 Sum_probs=69.2
Q ss_pred eeeEEEEecCCCceEEEe-CC----CCcEEEEECCCCcEEEE-eecCCCCeEEEEEecCCCEEEEEeCCC----------
Q 018858 17 TATCCIASRDRPGFVASS-GE----DGCICWFDLRSKDVQLV-TDVGNGPVTSLCFKSGNEDIIYVSSGK---------- 80 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~-~~----dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg---------- 80 (349)
.+....++|+ +++++-+ +. ...|+++|+++++.+.. +... ....+.|.++++.|+....+.
T Consensus 125 ~~~~~~~Spd-g~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~ 201 (414)
T PF02897_consen 125 SLGGFSVSPD-GKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYP 201 (414)
T ss_dssp EEEEEEETTT-SSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCC
T ss_pred EeeeeeECCC-CCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCC
Confidence 4446788998 6776633 22 24699999999977543 2221 122399999988877765332
Q ss_pred -eEEEEEccCCCcc-cceeeccCcccceEEEEEccCCCEEEEEcC---C-CcEEEEEcCCc
Q 018858 81 -EVKSFDVHMPASW-RPLESYNYNKEEINQIVCNPKSSFLACADD---G-GDVKIIDIRQH 135 (349)
Q Consensus 81 -~i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d-g~i~i~d~~~~ 135 (349)
.|+.|.+.++... ..+............+..++++++++.... + ..+++.|+..+
T Consensus 202 ~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 202 RQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred cEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 4777887765322 122222211112567888999998875432 2 34788888764
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.026 Score=48.07 Aligned_cols=155 Identities=13% Similarity=0.171 Sum_probs=93.8
Q ss_pred eeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEe-CCCeEEEEEccCCCcccce
Q 018858 18 ATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVS-SGKEVKSFDVHMPASWRPL 96 (349)
Q Consensus 18 i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~ 96 (349)
...+...+++.+..++-.....+..-+...................++.++.+..+.... .++.|.+.|..+......+
T Consensus 33 ~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~ 112 (381)
T COG3391 33 PGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSI 112 (381)
T ss_pred CceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEe
Confidence 344566666223333333223455544442111111121113345678888888655544 4588999997654333322
Q ss_pred eeccCcccceEEEEEccCCCEEEEEcC---CCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccc
Q 018858 97 ESYNYNKEEINQIVCNPKSSFLACADD---GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQC 173 (349)
Q Consensus 97 ~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 173 (349)
.. ......++++|+++.+..+.. ++.+.+.|-.+++...... ....+ ..+++.|
T Consensus 113 ~v----G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~-vG~~P-~~~a~~p----------------- 169 (381)
T COG3391 113 PV----GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP-VGNTP-TGVAVDP----------------- 169 (381)
T ss_pred ee----ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe-cCCCc-ceEEECC-----------------
Confidence 22 125678999999977766554 6889999998888887755 32233 7888888
Q ss_pred cCCceeEEeecCcccccCCCCcEEEEE-cCCCeEEEEEccCc
Q 018858 174 YNPAFVHAIAIPDADMLDKTNKICVVA-KGDGVVDVINIESE 214 (349)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~ 214 (349)
++..+.+. ..++.|.++|....
T Consensus 170 -------------------~g~~vyv~~~~~~~v~vi~~~~~ 192 (381)
T COG3391 170 -------------------DGNKVYVTNSDDNTVSVIDTSGN 192 (381)
T ss_pred -------------------CCCeEEEEecCCCeEEEEeCCCc
Confidence 67755554 47899999997753
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0061 Score=46.93 Aligned_cols=105 Identities=10% Similarity=0.067 Sum_probs=72.4
Q ss_pred CCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCC
Q 018858 115 SSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTN 194 (349)
Q Consensus 115 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (349)
..+++.|+..+.+.-.|..+|+.+.+-. -..++.+-+.- -|
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i--lg~RiE~sa~v-------------------------------------vg 63 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI--LGVRIECSAIV-------------------------------------VG 63 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh--hCceeeeeeEE-------------------------------------EC
Confidence 3567888889999999999998876544 23334333322 26
Q ss_pred cEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcce-EEEEEe
Q 018858 195 KICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAA-SCVAFS 273 (349)
Q Consensus 195 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i-~~i~~~ 273 (349)
++++.|+..|.+++.+.+++.. ...+..- +.| ......
T Consensus 64 dfVV~GCy~g~lYfl~~~tGs~----------------------------------------~w~f~~~-~~vk~~a~~d 102 (354)
T KOG4649|consen 64 DFVVLGCYSGGLYFLCVKTGSQ----------------------------------------IWNFVIL-ETVKVRAQCD 102 (354)
T ss_pred CEEEEEEccCcEEEEEecchhh----------------------------------------eeeeeeh-hhhccceEEc
Confidence 7799999999999999998621 1112111 111 122344
Q ss_pred eecCCccEEEEeeCCCeEEEEecCCCcce
Q 018858 274 MFGERGKYLISGGNDKLVKVWDCSRFQGV 302 (349)
Q Consensus 274 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 302 (349)
+++..+..|+.|+..+..|.++...+
T Consensus 103 ---~~~glIycgshd~~~yalD~~~~~cV 128 (354)
T KOG4649|consen 103 ---FDGGLIYCGSHDGNFYALDPKTYGCV 128 (354)
T ss_pred ---CCCceEEEecCCCcEEEecccccceE
Confidence 78899999999999999999987544
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.017 Score=45.54 Aligned_cols=166 Identities=14% Similarity=0.136 Sum_probs=109.8
Q ss_pred eCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecC-CCCeEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 018858 12 RGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVG-NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP 90 (349)
Q Consensus 12 ~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 90 (349)
.+-...|.++.|+|+ .+.|++......-.|+=..+|+.+.+++-. -.....|.+..++++.++--.++.+.++.+...
T Consensus 82 ~g~~~nvS~LTynp~-~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNPD-TRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCCC-cceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 344556999999999 677777776677777766778888777532 233456888888888888778888988877654
Q ss_pred Cccc-------ceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceec--ccc-------ccceeEEEE
Q 018858 91 ASWR-------PLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR--AGH-------SSICSSVQF 154 (349)
Q Consensus 91 ~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~-------~~~v~~~~~ 154 (349)
.... ++............++|.|..+.|..+-+..-+.||.+......-... ..+ -..+.++.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 2221 122222224567889999999888888888888888766322100000 001 123455556
Q ss_pred ccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC
Q 018858 155 IPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 213 (349)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 213 (349)
++. .+.+|+-+.+++.+.-.|...
T Consensus 241 ~~~-----------------------------------~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 241 NAI-----------------------------------TNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred cCC-----------------------------------CCcEEEEecCCceEEEEecCC
Confidence 553 677788888888888888775
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.029 Score=45.51 Aligned_cols=63 Identities=14% Similarity=0.219 Sum_probs=43.2
Q ss_pred cCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCce
Q 018858 68 SGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC 136 (349)
Q Consensus 68 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 136 (349)
..++.|+.|+.+| +.++++........+.. ...|..+...|+-+.+++-+ |+.++++++..-.
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~----~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~ 67 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK----LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLE 67 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee----cceEEEEEEecccCEEEEEc-CCccEEEEchhhc
Confidence 3578899999888 89999833222222222 23489999988777766654 4899999987543
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.036 Score=49.76 Aligned_cols=92 Identities=13% Similarity=0.147 Sum_probs=45.5
Q ss_pred cEEEEECCCCcEEE--EeecCCCCeEEEEEecCCCEEEEEeCC------CeEEEEEccCCCcccceeeccCcccceEEEE
Q 018858 39 CICWFDLRSKDVQL--VTDVGNGPVTSLCFKSGNEDIIYVSSG------KEVKSFDVHMPASWRPLESYNYNKEEINQIV 110 (349)
Q Consensus 39 ~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 110 (349)
.+..||..+.+... .++..... .+++. -++...+.||.+ ..+..||..+.. ...+..+...........
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~-W~~~~~m~~~R~~~~~~~ 349 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKI-HVELPPMIKNRCRFSLAV 349 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCe-EeeCCCCcchhhceeEEE
Confidence 46778887665322 22111111 12222 356666777753 357788887643 222222221111222222
Q ss_pred EccCCCEEEEEcCCC-----cEEEEEcCCc
Q 018858 111 CNPKSSFLACADDGG-----DVKIIDIRQH 135 (349)
Q Consensus 111 ~~~~~~~l~~~~~dg-----~i~i~d~~~~ 135 (349)
-+++..+.|+.++ .+..||..+.
T Consensus 350 --~~g~IYviGG~~~~~~~~sve~Ydp~~~ 377 (557)
T PHA02713 350 --IDDTIYAIGGQNGTNVERTIECYTMGDD 377 (557)
T ss_pred --ECCEEEEECCcCCCCCCceEEEEECCCC
Confidence 2567777887654 3777887654
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.029 Score=50.41 Aligned_cols=88 Identities=11% Similarity=0.080 Sum_probs=51.4
Q ss_pred CCeEEEEEecCCCEEEEEe------CCC--eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCC------
Q 018858 59 GPVTSLCFKSGNEDIIYVS------SGK--EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDG------ 124 (349)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~------~dg--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------ 124 (349)
..+...+++|+|+.++... .|. .|.+++.. .....+. .+ ...+.-.|+|+|+.+++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g--g~~~~lt--~g--~~~t~PsWspDG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG--GVAVQVL--EG--HSLTRPSWSLDADAVWVVVDGNTVVRV 423 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC--Ccceeee--cC--CCCCCceECCCCCceEEEecCcceEEE
Confidence 4677889999999987765 243 45555542 2223322 21 237788999998877766432
Q ss_pred ------CcEEEEEcCCceEeceeccccccceeEEEEcc
Q 018858 125 ------GDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 125 ------g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
+.+.+.++..++... . ....|..+.|+|
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~--~--~~g~Issl~wSp 457 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVAS--R--VPGPISELQLSR 457 (591)
T ss_pred eccCCCceEEEEeccCchhhh--c--cCCCcCeEEECC
Confidence 233333443332222 1 234688888888
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0024 Score=54.05 Aligned_cols=148 Identities=14% Similarity=0.140 Sum_probs=91.6
Q ss_pred CCCEE-EEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCC
Q 018858 114 KSSFL-ACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDK 192 (349)
Q Consensus 114 ~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (349)
+.++| ..+.....++-.|++.|+.+.+.+ .+.. |.-+.+.|+......
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk-~~~d-i~mv~~t~d~K~~Ql----------------------------- 392 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWK-FEDD-INMVDITPDFKFAQL----------------------------- 392 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEee-ccCC-cceeeccCCcchhcc-----------------------------
Confidence 33444 345555679999999999999998 4443 777778885332210
Q ss_pred CCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEE
Q 018858 193 TNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAF 272 (349)
Q Consensus 193 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~ 272 (349)
+...-++|-.+..|.-||.+-.-. ..|+ ...-+.+. ......|.+-
T Consensus 393 ~~e~TlvGLs~n~vfriDpRv~~~---------------------~kl~------------~~q~kqy~-~k~nFsc~aT 438 (644)
T KOG2395|consen 393 TSEQTLVGLSDNSVFRIDPRVQGK---------------------NKLA------------VVQSKQYS-TKNNFSCFAT 438 (644)
T ss_pred cccccEEeecCCceEEecccccCc---------------------ceee------------eeeccccc-cccccceeee
Confidence 111224566778898999884200 0011 01111121 1234556665
Q ss_pred eeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCC
Q 018858 273 SMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS 340 (349)
Q Consensus 273 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 340 (349)
. ...+++.||.+|.||+||--.. .-...+.+...+|..+..+. +|++|+..+..
T Consensus 439 T----~sG~IvvgS~~GdIRLYdri~~---------~AKTAlPgLG~~I~hVdvta-dGKwil~Tc~t 492 (644)
T KOG2395|consen 439 T----ESGYIVVGSLKGDIRLYDRIGR---------RAKTALPGLGDAIKHVDVTA-DGKWILATCKT 492 (644)
T ss_pred c----CCceEEEeecCCcEEeehhhhh---------hhhhcccccCCceeeEEeec-cCcEEEEeccc
Confidence 4 4459999999999999997332 33345667888999999977 88877665543
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.032 Score=45.49 Aligned_cols=160 Identities=14% Similarity=0.128 Sum_probs=95.3
Q ss_pred ecCCCceEEEeCCCCcEEEEECC-CCcEEEEe----ecCCCCeE-EEEEecCCCEEEEEeCCCeEEEEEccCCCccccee
Q 018858 24 SRDRPGFVASSGEDGCICWFDLR-SKDVQLVT----DVGNGPVT-SLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLE 97 (349)
Q Consensus 24 ~~~~~~~l~t~~~dg~i~vwd~~-~~~~~~~~----~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 97 (349)
-|.+..-+.+-+.||.+.-..+. .|+..... .....++. .-++...+..++..+.+|.|+-.|+.... .+...
T Consensus 143 yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~-~~~~~ 221 (342)
T PF06433_consen 143 YPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS-AKFGK 221 (342)
T ss_dssp EEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS-EEEEE
T ss_pred EecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCc-ccccC
Confidence 34434567788889999999887 45553221 11222332 33455566667778899999998887532 22222
Q ss_pred eccC----------cccceEEEEEccCCCEEEEEcC---CC-------cEEEEEcCCceEeceeccccccceeEEEEccC
Q 018858 98 SYNY----------NKEEINQIVCNPKSSFLACADD---GG-------DVKIIDIRQHCLYKSLRAGHSSICSSVQFIPW 157 (349)
Q Consensus 98 ~~~~----------~~~~v~~~~~~~~~~~l~~~~~---dg-------~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 157 (349)
.+.. ..+.-.-+++++..+.|.+-.. ++ .|.++|+.+++.+..+. -..++.+++.+.+
T Consensus 222 ~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~--l~~~~~Si~Vsqd 299 (342)
T PF06433_consen 222 PWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIP--LEHPIDSIAVSQD 299 (342)
T ss_dssp EEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEE--EEEEESEEEEESS
T ss_pred cccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEe--CCCccceEEEccC
Confidence 2110 0123445788876655544321 11 48899999999999887 3456888999884
Q ss_pred CCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEE-EcCCCeEEEEEccCceeeeecC
Q 018858 158 KPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV-AKGDGVVDVINIESELNISRSK 221 (349)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~ 221 (349)
+..+|+. ...++.|.+||..+++.+....
T Consensus 300 -----------------------------------~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 300 -----------------------------------DKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp -----------------------------------SS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred -----------------------------------CCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 3345544 4568999999999986655443
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0031 Score=57.92 Aligned_cols=103 Identities=16% Similarity=0.182 Sum_probs=72.9
Q ss_pred CceEEEeCCCCcEEEEECCCC-cEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccce
Q 018858 28 PGFVASSGEDGCICWFDLRSK-DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEI 106 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v 106 (349)
+..++.|+..|.+-..|.... .+...=..-.++|++++|+.+|..++.|-.+|.|.+||+..++..+.+.........+
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV 178 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence 446778888888888886542 1111112245899999999999999999999999999999876666555544334445
Q ss_pred EEEEEccCCCEEEEEcCCCcEEEEEc
Q 018858 107 NQIVCNPKSSFLACADDGGDVKIIDI 132 (349)
Q Consensus 107 ~~~~~~~~~~~l~~~~~dg~i~i~d~ 132 (349)
-.+.+..++..++++...|. +|.+
T Consensus 179 i~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 179 IFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEeCCCcEEEEccCCCc--eEEE
Confidence 55556666677888877776 4554
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.03 Score=45.50 Aligned_cols=139 Identities=15% Similarity=0.197 Sum_probs=69.2
Q ss_pred CceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcc-CCCc
Q 018858 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVH-MPAS 92 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~ 92 (349)
-.+.+..+.-+++ +.+++++..-..+.-||.-...-...-......|..|.|.|++...+ ..+.|.|+.=+.. ..+.
T Consensus 143 ~~gs~~~~~r~~d-G~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~-~~~Gg~~~~s~~~~~~~~ 220 (302)
T PF14870_consen 143 TSGSINDITRSSD-GRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWM-LARGGQIQFSDDPDDGET 220 (302)
T ss_dssp ----EEEEEE-TT-S-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEE-EETTTEEEEEE-TTEEEE
T ss_pred CcceeEeEEECCC-CcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEE-EeCCcEEEEccCCCCccc
Confidence 3466888888887 88888887655666787543222222233568899999999977655 4478888877621 1111
Q ss_pred c-cceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceecc--ccccceeEEEEcc
Q 018858 93 W-RPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA--GHSSICSSVQFIP 156 (349)
Q Consensus 93 ~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~ 156 (349)
. +.+.......-.+..++|.+++...++|+. |.+ +.....|+.-+..+. .-...++.+.|.+
T Consensus 221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~ 285 (302)
T PF14870_consen 221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVN 285 (302)
T ss_dssp E---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEE
T ss_pred cccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcC
Confidence 1 111111112234789999988877776665 444 344455543333221 3345678888876
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0045 Score=52.49 Aligned_cols=121 Identities=12% Similarity=0.139 Sum_probs=82.0
Q ss_pred EEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCE-------EEEEeCCCeEEEEEccCCCcccceeeccCc-
Q 018858 31 VASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNED-------IIYVSSGKEVKSFDVHMPASWRPLESYNYN- 102 (349)
Q Consensus 31 l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~- 102 (349)
|.++.....|+--|++.|+.+..++.+.. |..+.+.|+.+. -+.|-.+..|.-||.+-... ..+...+.+
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~-~kl~~~q~kq 426 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK-NKLAVVQSKQ 426 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc-ceeeeeeccc
Confidence 44566667788889999999999887766 777778776532 34466678899999874221 122211111
Q ss_pred ---ccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEe-ceeccccccceeEEEEcc
Q 018858 103 ---KEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLY-KSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 103 ---~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~v~~~~~~~ 156 (349)
.....|.+-..+ .++|+|+.+|.|++||- .+..- ..++ +...+|..+..+.
T Consensus 427 y~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdr-i~~~AKTAlP-gLG~~I~hVdvta 481 (644)
T KOG2395|consen 427 YSTKNNFSCFATTES-GYIVVGSLKGDIRLYDR-IGRRAKTALP-GLGDAIKHVDVTA 481 (644)
T ss_pred cccccccceeeecCC-ceEEEeecCCcEEeehh-hhhhhhhccc-ccCCceeeEEeec
Confidence 223455555544 48999999999999996 44333 3455 7888899999888
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.022 Score=51.05 Aligned_cols=92 Identities=8% Similarity=0.035 Sum_probs=45.3
Q ss_pred CceEEEeCCC------CcEEEEECCCCcEEE--EeecCCCCeEEEEEecCCCEEEEEeCCC-----eEEEEEccCCCccc
Q 018858 28 PGFVASSGED------GCICWFDLRSKDVQL--VTDVGNGPVTSLCFKSGNEDIIYVSSGK-----EVKSFDVHMPASWR 94 (349)
Q Consensus 28 ~~~l~t~~~d------g~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~ 94 (349)
+.+.+.||.+ ..+..||..+..... .+....... +++ .-+++..+.||.++ .+..||..+.+ ..
T Consensus 304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~-~~~g~IYviGG~~~~~~~~sve~Ydp~~~~-W~ 380 (557)
T PHA02713 304 NEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLA-VIDDTIYAIGGQNGTNVERTIECYTMGDDK-WK 380 (557)
T ss_pred CEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEE-EECCEEEEECCcCCCCCCceEEEEECCCCe-EE
Confidence 5677777753 246778877654321 111111111 222 23566777777653 58889987642 33
Q ss_pred ceeeccCcccceEEEEEccCCCEEEEEcCC
Q 018858 95 PLESYNYNKEEINQIVCNPKSSFLACADDG 124 (349)
Q Consensus 95 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 124 (349)
.+..++........+++ +++..+.|+.+
T Consensus 381 ~~~~mp~~r~~~~~~~~--~g~IYviGG~~ 408 (557)
T PHA02713 381 MLPDMPIALSSYGMCVL--DQYIYIIGGRT 408 (557)
T ss_pred ECCCCCcccccccEEEE--CCEEEEEeCCC
Confidence 33222211111222222 56667777755
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00038 Score=52.25 Aligned_cols=144 Identities=15% Similarity=0.155 Sum_probs=79.6
Q ss_pred EEEEeCCCeEEEEEccCCCcccceeeccCcccceEEE-EEccCCCEEEEEcCCCcEEEEEcCC-ceEeceecccccccee
Q 018858 73 IIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQI-VCNPKSSFLACADDGGDVKIIDIRQ-HCLYKSLRAGHSSICS 150 (349)
Q Consensus 73 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~v~ 150 (349)
+..-+.+|.|.-++++..+. ....- ..+.+. ....-+..+++|+.+|.|++|.... +.....+. .....+.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~--s~rse----~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~-s~~e~i~ 105 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKE--SCRSE----RFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVC-SGEESID 105 (238)
T ss_pred hccccCCcccccchhhhhhh--hhhhh----hhhhcceeecccCceEEeecccceEEEecCCccchHHHhhh-cccccce
Confidence 44455677787777764211 11111 111111 1122356799999999999998762 11111111 1112222
Q ss_pred EEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccce
Q 018858 151 SVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGS 230 (349)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 230 (349)
++--.- .++.+..++..+|.|+.|++.-.
T Consensus 106 ~~Ip~~-----------------------------------~~~~~~c~~~~dg~ir~~n~~p~---------------- 134 (238)
T KOG2444|consen 106 LGIPNG-----------------------------------RDSSLGCVGAQDGRIRACNIKPN---------------- 134 (238)
T ss_pred eccccc-----------------------------------cccceeEEeccCCceeeeccccC----------------
Confidence 221111 15668889999999999998853
Q ss_pred eeeeccccEEEEeeeeeecCceeeeeeeeecCCC-cceEEEEEeeecCCccEEEEe--eCCCeEEEEecCCCcc
Q 018858 231 QSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHT-AAASCVAFSMFGERGKYLISG--GNDKLVKVWDCSRFQG 301 (349)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~i~~i~~~~~~~~~~~l~s~--~~d~~i~vwd~~~~~~ 301 (349)
+.+.....|. .++.....+ ..+++++.+ |.|..++.|++.....
T Consensus 135 ------------------------k~~g~~g~h~~~~~e~~ivv---~sd~~i~~a~~S~d~~~k~W~ve~~~d 181 (238)
T KOG2444|consen 135 ------------------------KVLGYVGQHNFESGEELIVV---GSDEFLKIADTSHDRVLKKWNVEKIKD 181 (238)
T ss_pred ------------------------ceeeeeccccCCCcceeEEe---cCCceEEeeccccchhhhhcchhhhhc
Confidence 1222222343 344444444 466778777 8888888888876543
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.041 Score=43.48 Aligned_cols=76 Identities=12% Similarity=0.235 Sum_probs=55.0
Q ss_pred ccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEe
Q 018858 103 KEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAI 182 (349)
Q Consensus 103 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (349)
...+.++.|+|+.+.|++......-.++=..+|+.++++....-.....+.+..
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-------------------------- 138 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-------------------------- 138 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec--------------------------
Confidence 455999999999998888777776666655678888887633333445566655
Q ss_pred ecCcccccCCCCcEEEEEcCCCeEEEEEccCc
Q 018858 183 AIPDADMLDKTNKICVVAKGDGVVDVINIESE 214 (349)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 214 (349)
++++.++--.++.+.++.+...
T Consensus 139 ----------~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 139 ----------GNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ----------CCEEEEEehhcceEEEEEEcCC
Confidence 5666666668888988888754
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0032 Score=57.83 Aligned_cols=83 Identities=19% Similarity=0.224 Sum_probs=62.6
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccc
Q 018858 69 GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSI 148 (349)
Q Consensus 69 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 148 (349)
.+..++.|+..|.+-..|+... ..++..-..-..+|++++|+.+|..++.|-.+|.|.+||+..++.++.+. .+..+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~-e~~ap 174 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVIT-EHGAP 174 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeee-ecCCc
Confidence 3556888888888888887642 22222222235789999999999999999999999999999999888887 66665
Q ss_pred eeEEEE
Q 018858 149 CSSVQF 154 (349)
Q Consensus 149 v~~~~~ 154 (349)
..++-+
T Consensus 175 ~t~vi~ 180 (1206)
T KOG2079|consen 175 VTGVIF 180 (1206)
T ss_pred cceEEE
Confidence 555443
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.053 Score=48.77 Aligned_cols=130 Identities=15% Similarity=0.091 Sum_probs=72.0
Q ss_pred eeeeEEEEecCCCceEEEeC------CCC--cEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCC--------
Q 018858 16 ATATCCIASRDRPGFVASSG------EDG--CICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG-------- 79 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~------~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------- 79 (349)
..+...+++|+ ++.++... .|. .|.+++.. +.......+ .....-.|+|+|+.|++....
T Consensus 350 ~~vsspaiSpd-G~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRS-GRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCC-CCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceECCCCCceEEEecCcceEEEec
Confidence 35778899998 55554332 233 55555643 222222222 237788999998888776532
Q ss_pred ----CeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEE---EEcCCceE-e---ceeccccccc
Q 018858 80 ----KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKI---IDIRQHCL-Y---KSLRAGHSSI 148 (349)
Q Consensus 80 ----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i---~d~~~~~~-~---~~~~~~~~~~ 148 (349)
+.+.+.+++.+.... .....|..+.|+|||..++... ++.|++ -....+.. + ..+.......
T Consensus 426 ~~~~gql~~~~vd~ge~~~------~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~ 498 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS------RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDT 498 (591)
T ss_pred cCCCceEEEEeccCchhhh------ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCc
Confidence 233333443322111 1245799999999999887765 467776 44334431 1 1122122233
Q ss_pred eeEEEEcc
Q 018858 149 CSSVQFIP 156 (349)
Q Consensus 149 v~~~~~~~ 156 (349)
+..+.|.+
T Consensus 499 ~~~l~W~~ 506 (591)
T PRK13616 499 AVSLDWRT 506 (591)
T ss_pred cccceEec
Confidence 56677776
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.12 Score=46.45 Aligned_cols=103 Identities=12% Similarity=0.081 Sum_probs=50.7
Q ss_pred CceEEEeCCCC------cEEEEECCCCcEEEE--eecCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEEccCCCccc
Q 018858 28 PGFVASSGEDG------CICWFDLRSKDVQLV--TDVGNGPVTSLCFKSGNEDIIYVSSG-----KEVKSFDVHMPASWR 94 (349)
Q Consensus 28 ~~~l~t~~~dg------~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~ 94 (349)
+.+++.||.++ .+..||..+.+.... +........ ++ .-+++..+.||.+ ..+..||..+++ ..
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~-~~-~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~-W~ 371 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPG-VT-VFNNRIYVIGGIYNSISLNTVESWKPGESK-WR 371 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccce-EE-EECCEEEEEeCCCCCEecceEEEEcCCCCc-ee
Confidence 46677776543 467788776654221 111111112 22 2256677777765 357788877643 22
Q ss_pred ceeeccCcccceEEEEEccCCCEEEEEcCC------CcEEEEEcCCc
Q 018858 95 PLESYNYNKEEINQIVCNPKSSFLACADDG------GDVKIIDIRQH 135 (349)
Q Consensus 95 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~ 135 (349)
....++...... +++ .-+++..+.|+.+ ..+..||..+.
T Consensus 372 ~~~~lp~~r~~~-~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~ 416 (534)
T PHA03098 372 EEPPLIFPRYNP-CVV-NVNNLIYVIGGISKNDELLKTVECFSLNTN 416 (534)
T ss_pred eCCCcCcCCccc-eEE-EECCEEEEECCcCCCCcccceEEEEeCCCC
Confidence 222222111111 112 1245666777632 34777777654
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0013 Score=49.43 Aligned_cols=62 Identities=15% Similarity=0.122 Sum_probs=43.6
Q ss_pred CCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccc-cceEEEEeecCCCCcEEEe--eCCCeEEEeeC
Q 018858 277 ERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLN-KKVNWLCTTPTESENLVVC--DTSKVVKVYSI 348 (349)
Q Consensus 277 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~--~~dg~i~iw~~ 348 (349)
.++.+..+++.||.||.|++.-. +.+.....|. .++....... .+++++.+ |.|..++.|++
T Consensus 112 ~~~~~~c~~~~dg~ir~~n~~p~---------k~~g~~g~h~~~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~v 176 (238)
T KOG2444|consen 112 RDSSLGCVGAQDGRIRACNIKPN---------KVLGYVGQHNFESGEELIVVG-SDEFLKIADTSHDRVLKKWNV 176 (238)
T ss_pred cccceeEEeccCCceeeeccccC---------ceeeeeccccCCCcceeEEec-CCceEEeeccccchhhhhcch
Confidence 45568889999999999999887 5555555566 4454444434 44567777 77778888876
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00086 Score=37.14 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=29.6
Q ss_pred ceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcE
Q 018858 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV 50 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~ 50 (349)
...|.+++|+|. .++||.+..+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~-mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPT-MDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCC-CCEEEEEECCCeEEEEEC-CCcC
Confidence 356999999999 899999999999999998 4443
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.067 Score=42.11 Aligned_cols=103 Identities=11% Similarity=0.086 Sum_probs=68.1
Q ss_pred eeEEEEecCCCceEEEeCCCCc-EEEEECCCCcEEEEeecCCCCe--EEEEEecCCCEEEEEeCC-----CeEEEEEccC
Q 018858 18 ATCCIASRDRPGFVASSGEDGC-ICWFDLRSKDVQLVTDVGNGPV--TSLCFKSGNEDIIYVSSG-----KEVKSFDVHM 89 (349)
Q Consensus 18 i~~~~~~~~~~~~l~t~~~dg~-i~vwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~ 89 (349)
-..++|+|.-..-++.+-.-|+ ..++|....+...++...+..- -.=.|||+|.+|...-.| |.|-|||.+.
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence 3446677764455666655554 4688888776655543222111 112589999988776544 7899999984
Q ss_pred CCcccceeeccCcccceEEEEEccCCCEEEEEc
Q 018858 90 PASWRPLESYNYNKEEINQIVCNPKSSFLACAD 122 (349)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 122 (349)
+ ...+-.+..|.-....+.|.+||+.++.+.
T Consensus 150 ~--fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 150 G--FQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred c--cceecccccCCcCcceeEEecCCcEEEEeC
Confidence 3 445556666767778899999999998764
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.08 Score=41.67 Aligned_cols=206 Identities=9% Similarity=-0.050 Sum_probs=108.5
Q ss_pred EEEEeecCC-CCeEEEEEecCCCEEEEEeCCC--eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCc
Q 018858 50 VQLVTDVGN-GPVTSLCFKSGNEDIIYVSSGK--EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGD 126 (349)
Q Consensus 50 ~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 126 (349)
.+.+++... .....+.|..++.++-+.+.-| .|+.+|+.+++...... ++. .---..++...+ +.....=.++.
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~-l~~-~~FgEGit~~~d-~l~qLTWk~~~ 111 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVP-LPP-RYFGEGITILGD-KLYQLTWKEGT 111 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE--TT-T--EEEEEEETT-EEEEEESSSSE
T ss_pred EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEE-CCc-cccceeEEEECC-EEEEEEecCCe
Confidence 345555322 3345688877788777777655 79999999875433222 211 112233444432 33333446788
Q ss_pred EEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeE
Q 018858 127 VKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVV 206 (349)
Q Consensus 127 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 206 (349)
..+||..+-+.+.++. ..+.=..++. ++..|+.......|
T Consensus 112 ~f~yd~~tl~~~~~~~--y~~EGWGLt~--------------------------------------dg~~Li~SDGS~~L 151 (264)
T PF05096_consen 112 GFVYDPNTLKKIGTFP--YPGEGWGLTS--------------------------------------DGKRLIMSDGSSRL 151 (264)
T ss_dssp EEEEETTTTEEEEEEE---SSS--EEEE--------------------------------------CSSCEEEE-SSSEE
T ss_pred EEEEccccceEEEEEe--cCCcceEEEc--------------------------------------CCCEEEEECCccce
Confidence 9999999988888877 3344455553 56677777778899
Q ss_pred EEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEee
Q 018858 207 DVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG 286 (349)
Q Consensus 207 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~ 286 (349)
+++|..+.+...... ...+| ..-..++.+.+. +|...|=.=
T Consensus 152 ~~~dP~~f~~~~~i~-----------V~~~g------------------------~pv~~LNELE~i----~G~IyANVW 192 (264)
T PF05096_consen 152 YFLDPETFKEVRTIQ-----------VTDNG------------------------RPVSNLNELEYI----NGKIYANVW 192 (264)
T ss_dssp EEE-TTT-SEEEEEE------------EETT------------------------EE---EEEEEEE----TTEEEEEET
T ss_pred EEECCcccceEEEEE-----------EEECC------------------------EECCCcEeEEEE----cCEEEEEeC
Confidence 999987642211110 00000 012245666665 565555554
Q ss_pred CCCeEEEEecCCCcceecccccceeeec------cccccceEEEEeecCCCCcEEEe
Q 018858 287 NDKLVKVWDCSRFQGVQTSINNDLLIKN------INLNKKVNWLCTTPTESENLVVC 337 (349)
Q Consensus 287 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~l~~~ 337 (349)
....|...|..++.......-..+.... ....+-.+.||+.|..+++++||
T Consensus 193 ~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 193 QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred CCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 5556666677776443211111111110 11245689999999777777776
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.12 Score=43.20 Aligned_cols=82 Identities=13% Similarity=0.084 Sum_probs=47.1
Q ss_pred eeeeecCCCcceEEEEEee---e-cCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCC
Q 018858 256 LDYSVGGHTAAASCVAFSM---F-GERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTES 331 (349)
Q Consensus 256 ~~~~~~~h~~~i~~i~~~~---~-~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 331 (349)
+...+..| ..+..+.|-. + .-.|.++++.-..+.|....++...... .....+......+..+++.| ||
T Consensus 245 P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~-----~~~~~~~~~~~r~~~v~~~p-DG 317 (331)
T PF07995_consen 245 PVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVT-----EEEEFLGGFGGRPRDVAQGP-DG 317 (331)
T ss_dssp -SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEE-----EEEEECTTSSS-EEEEEEET-TS
T ss_pred cceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCcc-----ceEEccccCCCCceEEEEcC-CC
Confidence 34445545 4566777652 0 0145677776667788888886543211 12222344555899999988 88
Q ss_pred CcEEEeeCCCeEE
Q 018858 332 ENLVVCDTSKVVK 344 (349)
Q Consensus 332 ~~l~~~~~dg~i~ 344 (349)
.+.++.+.+|.|+
T Consensus 318 ~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 318 ALYVSDDSDGKIY 330 (331)
T ss_dssp EEEEEE-TTTTEE
T ss_pred eEEEEECCCCeEe
Confidence 8777777788764
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0017 Score=35.93 Aligned_cols=32 Identities=13% Similarity=0.311 Sum_probs=28.8
Q ss_pred cceEEEEEccCCCEEEEEcCCCcEEEEEcCCce
Q 018858 104 EEINQIVCNPKSSFLACADDGGDVKIIDIRQHC 136 (349)
Q Consensus 104 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 136 (349)
..|.+++|+|...++|.++.+|.|.++.+ +++
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 56899999999999999999999999998 444
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.18 Score=45.39 Aligned_cols=110 Identities=11% Similarity=0.114 Sum_probs=58.1
Q ss_pred eEEEEecCCCceEEEeCCC------CcEEEEECCCCcEEE--EeecCCCCeEEEEEecCCCEEEEEeCCC-----eEEEE
Q 018858 19 TCCIASRDRPGFVASSGED------GCICWFDLRSKDVQL--VTDVGNGPVTSLCFKSGNEDIIYVSSGK-----EVKSF 85 (349)
Q Consensus 19 ~~~~~~~~~~~~l~t~~~d------g~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iw 85 (349)
.++++.. +.+.++||.| .++..||..+.+-.. .+........ ++ .-+|...++|+.|| ++..|
T Consensus 326 ~~~~~~~--~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~-v~-~l~g~iYavGG~dg~~~l~svE~Y 401 (571)
T KOG4441|consen 326 VGVAVLN--GKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFG-VA-VLDGKLYAVGGFDGEKSLNSVECY 401 (571)
T ss_pred ccEEEEC--CEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccce-eE-EECCEEEEEeccccccccccEEEe
Confidence 3444443 5788889888 346677777665332 1111111111 11 22577788888886 57788
Q ss_pred EccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCC------cEEEEEcCCc
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGG------DVKIIDIRQH 135 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~ 135 (349)
|..+.+ ..............-... -++...++|+.++ .+..||..++
T Consensus 402 Dp~~~~-W~~va~m~~~r~~~gv~~--~~g~iYi~GG~~~~~~~l~sve~YDP~t~ 454 (571)
T KOG4441|consen 402 DPVTNK-WTPVAPMLTRRSGHGVAV--LGGKLYIIGGGDGSSNCLNSVECYDPETN 454 (571)
T ss_pred cCCCCc-ccccCCCCcceeeeEEEE--ECCEEEEEcCcCCCccccceEEEEcCCCC
Confidence 877643 222222211111122222 2577778887554 4667776654
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.31 Score=41.58 Aligned_cols=41 Identities=12% Similarity=0.173 Sum_probs=33.3
Q ss_pred eeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCC
Q 018858 256 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 256 ~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 299 (349)
....+......+.+|..+ |++++.++...=|.|.++|+.++
T Consensus 299 ~r~~l~D~~R~~~~i~~s---P~~~laA~tDslGRV~LiD~~~~ 339 (415)
T PF14655_consen 299 MRFGLPDSKREGESICLS---PSGRLAAVTDSLGRVLLIDVARG 339 (415)
T ss_pred eEEeeccCCceEEEEEEC---CCCCEEEEEcCCCcEEEEECCCC
Confidence 344555666778999999 88888888777799999999997
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.2 Score=41.01 Aligned_cols=136 Identities=10% Similarity=0.062 Sum_probs=81.0
Q ss_pred eeEEEEecCCCceEEEeCC------C---CcEEEEECC-CCcEEEEeecCCCCeEEEEEecCCCEEEEEeC-CCeEEEEE
Q 018858 18 ATCCIASRDRPGFVASSGE------D---GCICWFDLR-SKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS-GKEVKSFD 86 (349)
Q Consensus 18 i~~~~~~~~~~~~l~t~~~------d---g~i~vwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd 86 (349)
-+.+...|+ |.+.++... . ..=.+|-+. .+..+..+..+-..-+.|+|||+++.++.+-. .+.|.-|+
T Consensus 113 ~ND~~v~pd-G~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~ 191 (307)
T COG3386 113 PNDGVVDPD-GRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYD 191 (307)
T ss_pred CCceeEcCC-CCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEe
Confidence 345566676 555554332 0 011344444 45555555555556678999999988877754 47888887
Q ss_pred ccC--CCcc--cceeeccCcccceEEEEEccCCCEEEEEcCCC-cEEEEEcCCceEeceeccccccceeEEEEcc
Q 018858 87 VHM--PASW--RPLESYNYNKEEINQIVCNPKSSFLACADDGG-DVKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 87 ~~~--~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
+.. +... ..........+..-.++...+|.+.+++...| .|.+|+.. ++.+..++ .....+++++|--
T Consensus 192 ~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~-lP~~~~t~~~FgG 264 (307)
T COG3386 192 LDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIK-LPVKRPTNPAFGG 264 (307)
T ss_pred cCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEE-CCCCCCccceEeC
Confidence 762 1111 11111222334555677777787775554444 89999987 88888877 4446677777754
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.21 Score=39.36 Aligned_cols=118 Identities=12% Similarity=0.070 Sum_probs=70.5
Q ss_pred eeeeEEEEecCCCceEEEeCCCC--cEEEEECCCCcEEEEeecCC-CCeEEEEEecCCCEEE-EEeCCCeEEEEEccCCC
Q 018858 16 ATATCCIASRDRPGFVASSGEDG--CICWFDLRSKDVQLVTDVGN-GPVTSLCFKSGNEDII-YVSSGKEVKSFDVHMPA 91 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg--~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~ 91 (349)
.-...+.|..+ +.++-+.+.-| .|+.+|+.+++......-.. -.-..++.. ++.|. ..=.++...+||..+-+
T Consensus 45 aFTQGL~~~~~-g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~ 121 (264)
T PF05096_consen 45 AFTQGLEFLDD-GTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLK 121 (264)
T ss_dssp -EEEEEEEEET-TEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred ccCccEEecCC-CEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccce
Confidence 34666777665 67777777665 79999999998766554322 222334444 33343 34467899999998643
Q ss_pred cccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceec
Q 018858 92 SWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR 142 (349)
Q Consensus 92 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 142 (349)
.+..+.. ...=+.++ .+++.|+.......++++|..+.+..+.+.
T Consensus 122 ---~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~ 166 (264)
T PF05096_consen 122 ---KIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQ 166 (264)
T ss_dssp ---EEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE
T ss_pred ---EEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEE
Confidence 3333322 24455666 466677777667789999988776665554
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.4 Score=38.28 Aligned_cols=135 Identities=12% Similarity=-0.005 Sum_probs=75.4
Q ss_pred eeeEEEEecCCCceEEEeC---CCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEE-ccCCCc
Q 018858 17 TATCCIASRDRPGFVASSG---EDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFD-VHMPAS 92 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~---~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd-~~~~~~ 92 (349)
.+.+.+++++ ++.++... ....++++... .....+. ....+....|++++...+....+....++. ...+..
T Consensus 25 ~~~s~AvS~d-g~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPD-GSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCC-CCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 6888999999 55544333 33455555543 2222221 233677889999977666666566666663 233221
Q ss_pred ccceeeccCcccceEEEEEccCCCEEEEEc---CCCcEEEEEcC---Cc--eE----eceeccccccceeEEEEcc
Q 018858 93 WRPLESYNYNKEEINQIVCNPKSSFLACAD---DGGDVKIIDIR---QH--CL----YKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 93 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~i~d~~---~~--~~----~~~~~~~~~~~v~~~~~~~ 156 (349)
....-........|+.+.++|||..++.-. .++.|.+--+. .+ .. ..... .....+..+.|.+
T Consensus 101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~-~~~~~v~~v~W~~ 175 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAP-PLLSDVTDVAWSD 175 (253)
T ss_pred eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecc-cccCcceeeeecC
Confidence 111111111112799999999998776554 34667766543 22 11 11111 2245678888887
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.4 Score=38.17 Aligned_cols=131 Identities=14% Similarity=0.100 Sum_probs=79.6
Q ss_pred eeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeec--CCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCccc
Q 018858 17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDV--GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWR 94 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 94 (349)
-+..+.++ +++...+..+.-++|.|+.+......+.. ..+--.+ |.-.|++..++..|.-+.+.|+.+.....
T Consensus 88 l~~Dv~vs---e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyayg--v~vsGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 88 LFADVRVS---EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYG--VYVSGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhheeEec---ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEE--EEecCCEEEEeeccCcEEEEECCCCCCce
Confidence 34455565 45777777778899999987654322211 1122233 34458888888866668888998766544
Q ss_pred ceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCce---EeceeccccccceeEEEEcc
Q 018858 95 PLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC---LYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 95 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~~ 156 (349)
....+.........++.+ |++-..+..|+-+.+.|+.... .+.... ....+.++..++
T Consensus 163 lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n--~g~g~~sv~vsd 223 (370)
T COG5276 163 LAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN--TGPGTYSVSVSD 223 (370)
T ss_pred eeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe--cCCceEEEEecC
Confidence 444443333444566665 6677777788999999998543 222222 223566666665
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.78 Score=41.08 Aligned_cols=55 Identities=7% Similarity=-0.070 Sum_probs=38.2
Q ss_pred cEEEEECCCCcEEEEeecCCC---------CeEEEEEecCCC---EEEEEeCCCeEEEEEccCCCcc
Q 018858 39 CICWFDLRSKDVQLVTDVGNG---------PVTSLCFKSGNE---DIIYVSSGKEVKSFDVHMPASW 93 (349)
Q Consensus 39 ~i~vwd~~~~~~~~~~~~~~~---------~v~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~ 93 (349)
.|.--|+++++....++.... ...-+.+..+|+ .++.+.++|.+++.|.++++.+
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 577778999999887765221 112222334665 6778999999999999988653
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.35 Score=37.09 Aligned_cols=57 Identities=14% Similarity=0.117 Sum_probs=42.0
Q ss_pred EEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEe
Q 018858 269 CVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVC 337 (349)
Q Consensus 269 ~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 337 (349)
.+++. .+|++.++.-..++|...|..++ +++..+.-....|+++||--++-..+++.
T Consensus 216 Gm~ID---~eG~L~Va~~ng~~V~~~dp~tG---------K~L~eiklPt~qitsccFgGkn~d~~yvT 272 (310)
T KOG4499|consen 216 GMTID---TEGNLYVATFNGGTVQKVDPTTG---------KILLEIKLPTPQITSCCFGGKNLDILYVT 272 (310)
T ss_pred cceEc---cCCcEEEEEecCcEEEEECCCCC---------cEEEEEEcCCCceEEEEecCCCccEEEEE
Confidence 34445 67888888888899999999999 66767666788999999954432344443
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.83 Score=40.92 Aligned_cols=109 Identities=11% Similarity=0.009 Sum_probs=67.3
Q ss_pred ceEEEeCCCCcEEEEECCCCcEEEEeecCC-CCeE----------EEEEecCCCEEEEEeCCCeEEEEEccCCCccccee
Q 018858 29 GFVASSGEDGCICWFDLRSKDVQLVTDVGN-GPVT----------SLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLE 97 (349)
Q Consensus 29 ~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~----------~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 97 (349)
..++.++.++.|+-.|..+++.+..+.... ..+. .+++ .+..++.++.++.|.-.|.++++......
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~~ 147 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSKK 147 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence 467777778899999999999988765321 1111 1122 23567788889999999999886544332
Q ss_pred eccCcc--cceEE-EEEccCCCEEEEEc------CCCcEEEEEcCCceEeceec
Q 018858 98 SYNYNK--EEINQ-IVCNPKSSFLACAD------DGGDVKIIDIRQHCLYKSLR 142 (349)
Q Consensus 98 ~~~~~~--~~v~~-~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~ 142 (349)
.. .+. ..+++ ..+. ++ .++++. .+|.|.-+|.++|+.+..+.
T Consensus 148 ~~-~~~~~~~~tssP~v~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 148 NG-DYKAGYTITAAPLVV-KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred cc-cccccccccCCcEEE-CC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 21 110 01111 1111 33 444443 26889999999999887765
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.39 Score=43.22 Aligned_cols=72 Identities=8% Similarity=-0.001 Sum_probs=46.7
Q ss_pred eEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecC
Q 018858 106 INQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIP 185 (349)
Q Consensus 106 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (349)
++-+.-+.-++..++-+....+.|||.+.+....+-.....+.|.++.|..
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWts----------------------------- 82 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTS----------------------------- 82 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeee-----------------------------
Confidence 344444444454455555567999999987643332212467899999876
Q ss_pred cccccCCCCcEEEEEcCCCeEEEEEc
Q 018858 186 DADMLDKTNKICVVAKGDGVVDVINI 211 (349)
Q Consensus 186 ~~~~~~~~~~~l~~~~~dg~i~i~d~ 211 (349)
.++++.+++-+....|.+|.-
T Consensus 83 -----t~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 83 -----TPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred -----cCCCCEEEEEEcCcEEEEEEc
Confidence 226777777777888888865
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.91 Score=40.94 Aligned_cols=65 Identities=14% Similarity=0.122 Sum_probs=32.6
Q ss_pred cCCCEEEEEeCCC------eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCC-----cEEEEEcCCc
Q 018858 68 SGNEDIIYVSSGK------EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGG-----DVKIIDIRQH 135 (349)
Q Consensus 68 ~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~ 135 (349)
.++..++.|+.++ .+..||..+.+ ...+............+. -+++.++.|+.++ .+..||..++
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~-W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~ 368 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKS-WNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGES 368 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCe-eeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCC
Confidence 3455666666542 57788877643 222222221112222222 2566777777652 3556666543
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.019 Score=30.77 Aligned_cols=32 Identities=25% Similarity=0.423 Sum_probs=27.4
Q ss_pred eeeeEEEEecCCC--ceEEEeCCCCcEEEEECCC
Q 018858 16 ATATCCIASRDRP--GFVASSGEDGCICWFDLRS 47 (349)
Q Consensus 16 ~~i~~~~~~~~~~--~~l~t~~~dg~i~vwd~~~ 47 (349)
+.|.++.|+|.++ ++|+.+-..|.+.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999998756 7899888889999999984
|
It contains a characteristic DLL sequence motif. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.23 Score=46.84 Aligned_cols=150 Identities=15% Similarity=0.046 Sum_probs=95.5
Q ss_pred CCeEEEEEecCCCEEEEE--eCCCeEEEEEccCCCcc-----cceee---ccCcccceEEEEEccCC-CEEEEEcCCCcE
Q 018858 59 GPVTSLCFKSGNEDIIYV--SSGKEVKSFDVHMPASW-----RPLES---YNYNKEEINQIVCNPKS-SFLACADDGGDV 127 (349)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~-----~~~~~---~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i 127 (349)
-++..+...+|+...++. +.+-.|..||+++-... .++.. .........++.|+|.- ...+....|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 455566666776654433 34447899999753211 11111 11112345678888854 445667788889
Q ss_pred EEEEcCCc-eEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeE
Q 018858 128 KIIDIRQH-CLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVV 206 (349)
Q Consensus 128 ~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 206 (349)
++..+... .....++ .....++++|+| .|+.+++|...|++
T Consensus 181 ~V~~~~~~~~~v~s~p--~t~~~Tav~WSp------------------------------------rGKQl~iG~nnGt~ 222 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFP--VTNSQTAVLWSP------------------------------------RGKQLFIGRNNGTE 222 (1405)
T ss_pred hhhhhhhhhhhhcccC--cccceeeEEecc------------------------------------ccceeeEecCCCeE
Confidence 88877632 2333444 556789999999 89999999999999
Q ss_pred EEEEccCceeee--ecCCCCCCccceeeeeccccEEEEeeee
Q 018858 207 DVINIESELNIS--RSKSTTKPLKGSQSTSKVNIRDAEMEIL 246 (349)
Q Consensus 207 ~i~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (349)
.-|...-..... .........+.+++|-....++++.+..
T Consensus 223 vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~n~ 264 (1405)
T KOG3630|consen 223 VQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYGNV 264 (1405)
T ss_pred EEeecccceeecccCCCcCCCcceeEEEEecceeEEEEeccc
Confidence 988876543222 2222234667889999999998874443
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.97 Score=40.07 Aligned_cols=103 Identities=8% Similarity=-0.096 Sum_probs=50.2
Q ss_pred CceEEEeCCCC-----cEEEEECCCCcEEE--EeecCCCCeEEEEEecCCCEEEEEeCC--CeEEEEEccCCCcccceee
Q 018858 28 PGFVASSGEDG-----CICWFDLRSKDVQL--VTDVGNGPVTSLCFKSGNEDIIYVSSG--KEVKSFDVHMPASWRPLES 98 (349)
Q Consensus 28 ~~~l~t~~~dg-----~i~vwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~ 98 (349)
+.+++.||.++ .+..||..+.+... .+....... +++ .-++...+.|+.+ ..+..||..+++ ...+..
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~~~~iYviGG~~~~~sve~ydp~~n~-W~~~~~ 348 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PANNKLYVVGGLPNPTSVERWFHGDAA-WVNMPS 348 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EECCEEEEECCcCCCCceEEEECCCCe-EEECCC
Confidence 46667777543 46677877654322 111111111 122 2356666777753 357788876532 223333
Q ss_pred ccCcccceEEEEEccCCCEEEEEcCCC---cEEEEEcCCc
Q 018858 99 YNYNKEEINQIVCNPKSSFLACADDGG---DVKIIDIRQH 135 (349)
Q Consensus 99 ~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~ 135 (349)
++........+. -+++..+.|+.++ .+..||.++.
T Consensus 349 l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~ 386 (480)
T PHA02790 349 LLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHD 386 (480)
T ss_pred CCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCC
Confidence 321111111222 2566677777543 3566776544
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.3 Score=45.07 Aligned_cols=38 Identities=18% Similarity=0.236 Sum_probs=32.4
Q ss_pred CCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCc
Q 018858 263 HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ 300 (349)
Q Consensus 263 h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 300 (349)
+...|..+.|+|+++++..|+.-..|+++|+||+....
T Consensus 145 ~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 145 SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 45689999999877778999999999999999997643
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.52 Score=41.40 Aligned_cols=131 Identities=13% Similarity=0.054 Sum_probs=72.5
Q ss_pred eeeeEEEEecCCCceEE-EeC--CCCcEEEEECCCCcEEEEeecCCCCeEEEEEecC----CCEEEEEeCCCeEEEEEcc
Q 018858 16 ATATCCIASRDRPGFVA-SSG--EDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSG----NEDIIYVSSGKEVKSFDVH 88 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~-t~~--~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~dg~i~iwd~~ 88 (349)
.+|..++|. | |+.++ |.= .+|..+.=| .+.+. .-+.|..+.|.|- ...+++......|.||.+.
T Consensus 20 HPvhGlaWT-D-GkqVvLT~L~l~~gE~kfGd---s~viG----qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 20 HPVHGLAWT-D-GKQVVLTDLQLHNGEPKFGD---SKVIG----QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred ccccceEec-C-CCEEEEEeeeeeCCccccCC---ccEee----ccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 578888887 3 44444 321 122222221 12222 3345899999884 3346666667889999886
Q ss_pred C--CCcccceeeccCc-----ccceEEEEEccCCCEEEEEcCCCcEEEEEcCC--ceEeceeccccccceeEEEEccC
Q 018858 89 M--PASWRPLESYNYN-----KEEINQIVCNPKSSFLACADDGGDVKIIDIRQ--HCLYKSLRAGHSSICSSVQFIPW 157 (349)
Q Consensus 89 ~--~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~v~~~~~~~~ 157 (349)
- .+..+.+.....+ .--.....|+|....|++-.....=.+++++. ......++ ..+.|.|.+|.+|
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~--~~G~IhCACWT~D 166 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK--TSGLIHCACWTKD 166 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc--CCceEEEEEecCc
Confidence 2 1111221111100 01124567999988887666554444566652 23333344 6678999999993
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.91 Score=38.96 Aligned_cols=149 Identities=12% Similarity=0.207 Sum_probs=85.0
Q ss_pred cCCCceEEEeCCCCcEEEEECCCCc-----EEEEeecCCCCeEEEEEec----CCCEEEEEeCCCeEEEEEccCCCc---
Q 018858 25 RDRPGFVASSGEDGCICWFDLRSKD-----VQLVTDVGNGPVTSLCFKS----GNEDIIYVSSGKEVKSFDVHMPAS--- 92 (349)
Q Consensus 25 ~~~~~~l~t~~~dg~i~vwd~~~~~-----~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~--- 92 (349)
+++...+++|+..|.++||+..... .+.+.+ -..+|..++.-+ .....++.-.-..+.||.+.....
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~ 112 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVE 112 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcc
Confidence 3346789999999999999985433 222222 356788776532 222333335567788888742110
Q ss_pred ---ccceeeccCcc--cceEEEEEcc----C-CCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCC
Q 018858 93 ---WRPLESYNYNK--EEINQIVCNP----K-SSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEG 162 (349)
Q Consensus 93 ---~~~~~~~~~~~--~~v~~~~~~~----~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 162 (349)
...+.....|. .....+++-| . ..++.+-+-||.+.+|+-+.-.....+. .---...+.|.+
T Consensus 113 ~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp--~~llPgPl~Y~~------ 184 (418)
T PF14727_consen 113 HGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLP--DFLLPGPLCYCP------ 184 (418)
T ss_pred cCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcC--CCCCCcCeEEee------
Confidence 01111111111 1222333322 2 3678888999999999965443333333 122233456666
Q ss_pred CCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEcc
Q 018858 163 LPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE 212 (349)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 212 (349)
..+.|++++.+..+.-|...
T Consensus 185 ------------------------------~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 185 ------------------------------RTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred ------------------------------cCCEEEEecCceeEEEecHH
Confidence 56778888888888888764
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=95.86 E-value=1.5 Score=40.66 Aligned_cols=97 Identities=14% Similarity=0.142 Sum_probs=50.3
Q ss_pred cceEEEEEccCCCEEEEEcCCCcEEEEEcCC-ceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEe
Q 018858 104 EEINQIVCNPKSSFLACADDGGDVKIIDIRQ-HCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAI 182 (349)
Q Consensus 104 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (349)
-.|..+.++|+|++++..+..| |.|..+-. ......+. +....+.|-.+.=+..+ ...-....+..+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~-~g~~~i~Crt~~v~~~~----------~~~~~~~~i~qv 152 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFE-DGKKEINCRTVPVDERF----------FTSNSSLEIKQV 152 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCcccccc-CCCcceeEEEEEechhh----------ccCCCCceEEEE
Confidence 4688899999999999888765 55554421 10001111 11111222111110000 000011223333
Q ss_pred ecCcccccCCCCcEEEEEcCCCeEEEEEccCce
Q 018858 183 AIPDADMLDKTNKICVVAKGDGVVDVINIESEL 215 (349)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 215 (349)
.|+|. +.++..|++-+.|+++|+||+....
T Consensus 153 ~WhP~---s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 153 RWHPW---SESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEcCC---CCCCCeEEEEecCCEEEEEecCCCC
Confidence 34432 2257889999999999999998644
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=95.77 E-value=1.7 Score=40.67 Aligned_cols=115 Identities=9% Similarity=0.059 Sum_probs=70.9
Q ss_pred CceEEEeCCCCcEEEEECCCCcEEEEeecCCCC--------eEEEEEec----------------CCCEEEEEeCCCeEE
Q 018858 28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGP--------VTSLCFKS----------------GNEDIIYVSSGKEVK 83 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~--------v~~~~~~~----------------~~~~l~~~~~dg~i~ 83 (349)
+..|+.++.++.|.-.|..+++.+..+...... ...+++.. .+..++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 356777788899999999999998887643211 12233321 345788888999999
Q ss_pred EEEccCCCcccceee-----cc----CcccceEEEEEcc--CCCEEEEEcC----------CCcEEEEEcCCceEeceec
Q 018858 84 SFDVHMPASWRPLES-----YN----YNKEEINQIVCNP--KSSFLACADD----------GGDVKIIDIRQHCLYKSLR 142 (349)
Q Consensus 84 iwd~~~~~~~~~~~~-----~~----~~~~~v~~~~~~~--~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~ 142 (349)
-.|.++++....+.. +. .....-..+.-.| .+..+++|+. +|.|+-+|.++|+.+..+.
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 999988864432211 00 0000000111112 1345666642 6889999999999988876
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.66 Score=40.02 Aligned_cols=123 Identities=14% Similarity=0.139 Sum_probs=72.8
Q ss_pred CceEE-EeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCC-------EEEEEeCCCeEEEEEccCCCcccceeec
Q 018858 28 PGFVA-SSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNE-------DIIYVSSGKEVKSFDVHMPASWRPLESY 99 (349)
Q Consensus 28 ~~~l~-t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 99 (349)
.++++ .|+....++--|++.|+.+..+..|... -+.|.|..+ .-++|-.+..|.-.|.+-..........
T Consensus 479 ssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~es 556 (776)
T COG5167 479 SSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVES 556 (776)
T ss_pred cceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeee
Confidence 44544 5566677888899999999888877765 466777432 1233444555555565532111111111
Q ss_pred cCcccceEEEEEc----cCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEcc
Q 018858 100 NYNKEEINQIVCN----PKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 100 ~~~~~~v~~~~~~----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
+..++--.|+ -.+.++|+++..|.|++||--.-.....++ +....|..+..+.
T Consensus 557 ---KdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP-~lG~aIk~idvta 613 (776)
T COG5167 557 ---KDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALP-GLGDAIKHIDVTA 613 (776)
T ss_pred ---hhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCc-ccccceeeeEeec
Confidence 1222222222 234689999999999999954433334445 6667788888777
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.84 Score=41.31 Aligned_cols=68 Identities=10% Similarity=0.038 Sum_probs=41.2
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEE--e--ecCCCCeEEEEEecCCCEEE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLV--T--DVGNGPVTSLCFKSGNEDII 74 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~--~--~~~~~~v~~~~~~~~~~~l~ 74 (349)
+|.++.++--...++..+.|+.+ .-|+.-..+|++++|++.. +.+.. . ......|..+.+..+|-.+.
T Consensus 72 sG~lL~~~~w~~~~lI~mgWs~~--eeLI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~GVavl 143 (829)
T KOG2280|consen 72 SGQLLGRILWKHGELIGMGWSDD--EELICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNGVAVL 143 (829)
T ss_pred cccchHHHHhcCCCeeeecccCC--ceEEEEeccceEEEeecch-hhhcccccccccccCceeEEEEecCceEEE
Confidence 44555555544457778999976 5677778999999999753 22222 1 22334466666665553333
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=95.61 E-value=1.4 Score=38.30 Aligned_cols=69 Identities=7% Similarity=0.105 Sum_probs=43.2
Q ss_pred EEEEecCCCEEEEEe-CCC----eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCC-----------c
Q 018858 63 SLCFKSGNEDIIYVS-SGK----EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGG-----------D 126 (349)
Q Consensus 63 ~~~~~~~~~~l~~~~-~dg----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----------~ 126 (349)
...++|+++++|.+- ..| .++++|+++++.... .+. ......+.|.++++.|+....+. .
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d--~i~--~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD--GIE--NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE--EEE--EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC--ccc--ccccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 577899999988663 333 699999998743321 221 11223499999987765443222 3
Q ss_pred EEEEEcCCc
Q 018858 127 VKIIDIRQH 135 (349)
Q Consensus 127 i~i~d~~~~ 135 (349)
|+.|.+.+.
T Consensus 204 v~~~~~gt~ 212 (414)
T PF02897_consen 204 VYRHKLGTP 212 (414)
T ss_dssp EEEEETTS-
T ss_pred EEEEECCCC
Confidence 777777654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=95.56 E-value=1.9 Score=39.57 Aligned_cols=35 Identities=14% Similarity=0.125 Sum_probs=25.4
Q ss_pred CCcceEEEEEeeec--CCcc-EEEEeeCCCeEEEEecC
Q 018858 263 HTAAASCVAFSMFG--ERGK-YLISGGNDKLVKVWDCS 297 (349)
Q Consensus 263 h~~~i~~i~~~~~~--~~~~-~l~s~~~d~~i~vwd~~ 297 (349)
|...|-+|.|.+.. ++|. +|++++-.|.+.+|++.
T Consensus 209 ~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 209 HSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred cccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 55678899998532 2232 78888889999998883
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.72 Score=41.61 Aligned_cols=103 Identities=13% Similarity=0.233 Sum_probs=66.6
Q ss_pred CceEEEeCCCCcEEEEECCCCcEEEEee-cCCCCeEEEEEe--cCCCEEEEEeCCCeEEEEEcc------CCCcccceee
Q 018858 28 PGFVASSGEDGCICWFDLRSKDVQLVTD-VGNGPVTSLCFK--SGNEDIIYVSSGKEVKSFDVH------MPASWRPLES 98 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~l~~~~~dg~i~iwd~~------~~~~~~~~~~ 98 (349)
++..+.-+....+.|||...+.....-. .....|..+.|. |+++.+++.+..+.|.++.-. .+.....+..
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~ 120 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRK 120 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEE
Confidence 3444444445679999998877533222 346789999984 689999999999999998532 1111222222
Q ss_pred c--cCcc-cceEEEEEccCCCEEEEEcCCCcEEEEEc
Q 018858 99 Y--NYNK-EEINQIVCNPKSSFLACADDGGDVKIIDI 132 (349)
Q Consensus 99 ~--~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 132 (349)
+ ..+. .+|.+..|.++|.+++.++ ..+.|+|-
T Consensus 121 i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 121 IDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred EEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 1 1222 5688999999887666543 36888874
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.52 Score=40.00 Aligned_cols=93 Identities=17% Similarity=0.187 Sum_probs=58.7
Q ss_pred CCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEE
Q 018858 193 TNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAF 272 (349)
Q Consensus 193 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~ 272 (349)
|++.+|+--.+..|.+++....+.. .....+-+.....|....|
T Consensus 77 DnkilAVQR~~~~v~f~nf~~d~~~------------------------------------l~~~~~ck~k~~~IlGF~W 120 (657)
T KOG2377|consen 77 DNKILAVQRTSKTVDFCNFIPDNSQ------------------------------------LEYTQECKTKNANILGFCW 120 (657)
T ss_pred CcceEEEEecCceEEEEecCCCchh------------------------------------hHHHHHhccCcceeEEEEE
Confidence 8999999999999999988532100 0111122223446888888
Q ss_pred eeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEE
Q 018858 273 SMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLV 335 (349)
Q Consensus 273 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 335 (349)
+ +..-+|-.+..| +-+|-+...+ +.+.....|+-.|++..|++ +-+.++
T Consensus 121 ~----~s~e~A~i~~~G-~e~y~v~pek--------rslRlVks~~~nvnWy~yc~-et~v~L 169 (657)
T KOG2377|consen 121 T----SSTEIAFITDQG-IEFYQVLPEK--------RSLRLVKSHNLNVNWYMYCP-ETAVIL 169 (657)
T ss_pred e----cCeeEEEEecCC-eEEEEEchhh--------hhhhhhhhcccCccEEEEcc-ccceEe
Confidence 7 445566555444 6677665543 45556677888899999987 444433
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.27 E-value=1.5 Score=36.71 Aligned_cols=136 Identities=13% Similarity=0.087 Sum_probs=71.0
Q ss_pred ceeeeEEEEecCCCceEEEeCCCCcEEE-EECCCCcEEEEe-ecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCc
Q 018858 15 KATATCCIASRDRPGFVASSGEDGCICW-FDLRSKDVQLVT-DVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPAS 92 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~dg~i~v-wd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 92 (349)
...+.++.+.|+ +.+++++. .|.+.. ++ ..++.-... ......++++.+.++++.++++ ..|.+.+=....+..
T Consensus 172 ~g~~~~i~~~~~-g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSPD-GKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECCC-CeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence 356888888887 66665554 455543 22 222222122 2334678899999988876654 467664322333433
Q ss_pred ccceeec-cCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceec--cccccceeEEEEcc
Q 018858 93 WRPLESY-NYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR--AGHSSICSSVQFIP 156 (349)
Q Consensus 93 ~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~~~ 156 (349)
...+... ......+..+.+.+++..++++ .+|.+. .....++.-...+ .......+.+.|..
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~ 312 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLD 312 (334)
T ss_pred cccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeC
Confidence 3322211 0012357788898877755554 566554 3334443322222 01223456666655
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=95.19 E-value=1.4 Score=38.88 Aligned_cols=137 Identities=15% Similarity=0.176 Sum_probs=76.8
Q ss_pred CCeEEEEEecCCCEE-EEEe--CCCeEEEEEccCCCcccceeeccCcccceEEEEEccC----CCEEEEEcCCCcEEEEE
Q 018858 59 GPVTSLCFKSGNEDI-IYVS--SGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK----SSFLACADDGGDVKIID 131 (349)
Q Consensus 59 ~~v~~~~~~~~~~~l-~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~dg~i~i~d 131 (349)
.++..++|. ||+.+ ++.- .+|.++.=| ...+..+ +.|..+.|.|- ...+++.-..+.|.+|.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd------s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWq 88 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD------SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQ 88 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC------ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEE
Confidence 478899997 45544 3332 233333211 1233333 56899999885 22444445567899999
Q ss_pred cCC-----ceEece----eccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcC
Q 018858 132 IRQ-----HCLYKS----LRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG 202 (349)
Q Consensus 132 ~~~-----~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (349)
+.. .+.+.. +.....--...+.|+| ....|++-..
T Consensus 89 L~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP------------------------------------k~~iL~VLT~ 132 (671)
T PF15390_consen 89 LCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP------------------------------------KKAILTVLTA 132 (671)
T ss_pred eccCccccccceeeeeeeccCCcccCCCcccccC------------------------------------CCceEEEEec
Confidence 861 222111 1101111234566777 6677777666
Q ss_pred CCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEE
Q 018858 203 DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE 242 (349)
Q Consensus 203 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (349)
...-.+++.+...............|.+.+|.+||..+++
T Consensus 133 ~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVV 172 (671)
T PF15390_consen 133 RDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVV 172 (671)
T ss_pred CceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEE
Confidence 5555566766544333333345567777888888877764
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=95.10 E-value=1.5 Score=35.85 Aligned_cols=99 Identities=15% Similarity=0.276 Sum_probs=50.7
Q ss_pred eecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEc-
Q 018858 54 TDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDI- 132 (349)
Q Consensus 54 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~- 132 (349)
.....+.+..+.-+++|++++++.....+.-||--.. ...+.... ....+..+.|.|++.+.+.+ +.|.|+.=+.
T Consensus 140 ~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~-~w~~~~r~--~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~ 215 (302)
T PF14870_consen 140 VSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT-TWQPHNRN--SSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDP 215 (302)
T ss_dssp E-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-S-S-EEEE----SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-T
T ss_pred ccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCc-cceEEccC--ccceehhceecCCCCEEEEe-CCcEEEEccCC
Confidence 3445577888888999999988887666677775421 12222222 24679999999998766654 7788887762
Q ss_pred CCceEece--ecc-ccccceeEEEEcc
Q 018858 133 RQHCLYKS--LRA-GHSSICSSVQFIP 156 (349)
Q Consensus 133 ~~~~~~~~--~~~-~~~~~v~~~~~~~ 156 (349)
...+.... ... .....+..++|.+
T Consensus 216 ~~~~~w~~~~~~~~~~~~~~ld~a~~~ 242 (302)
T PF14870_consen 216 DDGETWSEPIIPIKTNGYGILDLAYRP 242 (302)
T ss_dssp TEEEEE---B-TTSS--S-EEEEEESS
T ss_pred CCccccccccCCcccCceeeEEEEecC
Confidence 22222111 110 1233467788877
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.14 Score=27.48 Aligned_cols=31 Identities=29% Similarity=0.490 Sum_probs=25.7
Q ss_pred cceEEEEEccCC---CEEEEEcCCCcEEEEEcCC
Q 018858 104 EEINQIVCNPKS---SFLACADDGGDVKIIDIRQ 134 (349)
Q Consensus 104 ~~v~~~~~~~~~---~~l~~~~~dg~i~i~d~~~ 134 (349)
+.+.++.|+|.. .+|+.+-..|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 358899999854 5888888889999999985
|
It contains a characteristic DLL sequence motif. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.2 Score=38.87 Aligned_cols=70 Identities=19% Similarity=0.241 Sum_probs=45.9
Q ss_pred CCccEEEEeeCCCeEEEEecCCCcceecccc-cceeeecc----ccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 277 ERGKYLISGGNDKLVKVWDCSRFQGVQTSIN-NDLLIKNI----NLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 277 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.++.+|++...+|.+++||+.+.+....... .+++.... .....|..+.+.. +|.-+++- .+|..+.|+.
T Consensus 20 ~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~-~G~PiV~l-sng~~y~y~~ 94 (219)
T PF07569_consen 20 CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS-NGVPIVTL-SNGDSYSYSP 94 (219)
T ss_pred eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC-CCCEEEEE-eCCCEEEecc
Confidence 4678999999999999999999865432210 11111100 3556788888864 77655554 4578888875
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.68 Score=43.94 Aligned_cols=64 Identities=27% Similarity=0.227 Sum_probs=40.7
Q ss_pred CcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEe
Q 018858 264 TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVC 337 (349)
Q Consensus 264 ~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 337 (349)
....+++.|+ |.|+.++.|-..|++.-|...-... . .+-.....-...|.+++|-... .++++-
T Consensus 198 t~~~Tav~WS---prGKQl~iG~nnGt~vQy~P~leik-~-----~ip~Pp~~e~yrvl~v~Wl~t~-eflvvy 261 (1405)
T KOG3630|consen 198 TNSQTAVLWS---PRGKQLFIGRNNGTEVQYEPSLEIK-S-----EIPEPPVEENYRVLSVTWLSTQ-EFLVVY 261 (1405)
T ss_pred ccceeeEEec---cccceeeEecCCCeEEEeeccccee-e-----cccCCCcCCCcceeEEEEecce-eEEEEe
Confidence 3467899999 8999999999999998886544210 0 0000011125688999997633 344443
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.78 E-value=1.3 Score=33.49 Aligned_cols=79 Identities=6% Similarity=-0.117 Sum_probs=41.1
Q ss_pred CCCEEEEEeCC--CeEEEEEccCCCcccceeec--cCcccceEEEEEccCCCEEE-EEcCCCcEEEEEcCCceEeceecc
Q 018858 69 GNEDIIYVSSG--KEVKSFDVHMPASWRPLESY--NYNKEEINQIVCNPKSSFLA-CADDGGDVKIIDIRQHCLYKSLRA 143 (349)
Q Consensus 69 ~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~ 143 (349)
+|.++.+.+.- ..|++||+.+++.......- ......++. -++.+. ..=.+|.-..+|.++-+++..+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~-----~gd~~y~LTw~egvaf~~d~~t~~~lg~~~- 128 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITK-----LGDYFYQLTWKEGVAFKYDADTLEELGRFS- 128 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceee-----ccceEEEEEeccceeEEEChHHhhhhcccc-
Confidence 45666665543 47999999987543322211 001112221 122222 22356778888888877777665
Q ss_pred ccccceeEEEE
Q 018858 144 GHSSICSSVQF 154 (349)
Q Consensus 144 ~~~~~v~~~~~ 154 (349)
.++.=..++.
T Consensus 129 -y~GeGWgLt~ 138 (262)
T COG3823 129 -YEGEGWGLTS 138 (262)
T ss_pred -cCCcceeeec
Confidence 3333344443
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=94.72 E-value=2.5 Score=36.41 Aligned_cols=70 Identities=16% Similarity=0.273 Sum_probs=40.9
Q ss_pred eEEEEEeeecC-C-ccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEE
Q 018858 267 ASCVAFSMFGE-R-GKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVK 344 (349)
Q Consensus 267 i~~i~~~~~~~-~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 344 (349)
...+.+-||+. . ..++..=+.||.+.+|+-+.. ........---.--+++.+ .-+.+++++.+..+.
T Consensus 131 a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~----------~f~~~lp~~llPgPl~Y~~-~tDsfvt~sss~~l~ 199 (418)
T PF14727_consen 131 AYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF----------AFSRFLPDFLLPGPLCYCP-RTDSFVTASSSWTLE 199 (418)
T ss_pred eeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE----------EEEEEcCCCCCCcCeEEee-cCCEEEEecCceeEE
Confidence 44555555432 2 357788899999999998774 2222222111122234555 334688888887777
Q ss_pred Eee
Q 018858 345 VYS 347 (349)
Q Consensus 345 iw~ 347 (349)
-|+
T Consensus 200 ~Yk 202 (418)
T PF14727_consen 200 CYK 202 (418)
T ss_pred Eec
Confidence 664
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=94.63 E-value=2.5 Score=36.11 Aligned_cols=116 Identities=15% Similarity=0.166 Sum_probs=58.7
Q ss_pred eeEEEEecCCCceEEEeCC--------------------CCcEEEEECCCCcEEEEeecCCC--CeEEEEEe--cCCCE-
Q 018858 18 ATCCIASRDRPGFVASSGE--------------------DGCICWFDLRSKDVQLVTDVGNG--PVTSLCFK--SGNED- 72 (349)
Q Consensus 18 i~~~~~~~~~~~~l~t~~~--------------------dg~i~vwd~~~~~~~~~~~~~~~--~v~~~~~~--~~~~~- 72 (349)
-..+-+.|. .+.++|+.. ..++.+||+.+.+.++++..... .+..+.|. |+..+
T Consensus 183 gYDfw~qpr-~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~g 261 (461)
T PF05694_consen 183 GYDFWYQPR-HNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYG 261 (461)
T ss_dssp ---EEEETT-TTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EE
T ss_pred CCCeEEcCC-CCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccce
Confidence 345556676 567776542 35799999999999999886543 34566664 44444
Q ss_pred EEEEeCCCeEEEEEc-cCCCccc---ceee----------------ccCcccceEEEEEccCCCEEEEEc-CCCcEEEEE
Q 018858 73 IIYVSSGKEVKSFDV-HMPASWR---PLES----------------YNYNKEEINQIVCNPKSSFLACAD-DGGDVKIID 131 (349)
Q Consensus 73 l~~~~~dg~i~iwd~-~~~~~~~---~~~~----------------~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d 131 (349)
++.+.-..+|..|-- +.++ .. .+.. +..-..-++.+.++.|.++|..++ ..|.|+.||
T Consensus 262 Fvg~aLss~i~~~~k~~~g~-W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYD 340 (461)
T PF05694_consen 262 FVGCALSSSIWRFYKDDDGE-WAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYD 340 (461)
T ss_dssp EEEEE--EEEEEEEE-ETTE-EEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE
T ss_pred EEEEeccceEEEEEEcCCCC-eeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEe
Confidence 333334455555533 2221 11 1110 101124578999999999997666 589999999
Q ss_pred cCCc
Q 018858 132 IRQH 135 (349)
Q Consensus 132 ~~~~ 135 (349)
+...
T Consensus 341 ISDP 344 (461)
T PF05694_consen 341 ISDP 344 (461)
T ss_dssp -SST
T ss_pred cCCC
Confidence 9853
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.82 Score=39.15 Aligned_cols=87 Identities=17% Similarity=0.128 Sum_probs=55.7
Q ss_pred eecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccC-----------------CC
Q 018858 54 TDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK-----------------SS 116 (349)
Q Consensus 54 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----------------~~ 116 (349)
+......+.+++.+|.+++.|+...-|.|.++|+.++...+..+.+.. ..+.-+..... ..
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRd--Aqc~wi~~~~~~~~~~~~~~~~~~~~~~~l 380 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRD--AQCGWIEVPEEGDRDRSNSNSPKSSSRFAL 380 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCcc--ceEEEEEeecccccccccccccCCCCcceE
Confidence 344456688999999988777766669999999998755554444321 11111111111 11
Q ss_pred EE-EEEcCCCcEEEEEcCCceEeceec
Q 018858 117 FL-ACADDGGDVKIIDIRQHCLYKSLR 142 (349)
Q Consensus 117 ~l-~~~~~dg~i~i~d~~~~~~~~~~~ 142 (349)
+| +-+-..|.|.||+++++..+..+.
T Consensus 381 ~LvIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 381 FLVIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred EEEEEeccCCeEEEEecCCCCEEEEEE
Confidence 23 345678999999999887776665
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=94.50 E-value=2.7 Score=35.83 Aligned_cols=102 Identities=12% Similarity=0.072 Sum_probs=55.3
Q ss_pred eeeEEEEecCCCceEEEeC-----------CCC-cEEEEECCC--CcE--EEEeecCCCCeEEEEEecCCCEEEEEeCCC
Q 018858 17 TATCCIASRDRPGFVASSG-----------EDG-CICWFDLRS--KDV--QLVTDVGNGPVTSLCFKSGNEDIIYVSSGK 80 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~-----------~dg-~i~vwd~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 80 (349)
....|+|.++ ++++++-. ..+ .|.+++-.+ ++. ...+...-.....+++.+++ |+++....
T Consensus 15 ~P~~ia~d~~-G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 15 NPIAVCFDER-GRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCceeeECCC-CCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 4567899998 77766642 223 677776542 332 23333334456789998888 44444443
Q ss_pred eEEEE-EccCC-----CcccceeeccCc----ccceEEEEEccCCCEEEEEc
Q 018858 81 EVKSF-DVHMP-----ASWRPLESYNYN----KEEINQIVCNPKSSFLACAD 122 (349)
Q Consensus 81 ~i~iw-d~~~~-----~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~ 122 (349)
|..+ |.... +....+..+... ......++|.|+|.+.++-+
T Consensus 92 -i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 92 -ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred -EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 4433 44311 111122223221 23467899999987665444
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=94.49 E-value=2.7 Score=35.81 Aligned_cols=71 Identities=7% Similarity=0.083 Sum_probs=37.7
Q ss_pred CCeEEEEEecCCCEEEEEe-----------CCC-eEEEEEccCCC-cccceeeccCcccceEEEEEccCCCEEEEEcCCC
Q 018858 59 GPVTSLCFKSGNEDIIYVS-----------SGK-EVKSFDVHMPA-SWRPLESYNYNKEEINQIVCNPKSSFLACADDGG 125 (349)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~-----------~dg-~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 125 (349)
.....|+|.++|+.+++-. ..+ .|.+++-.++. .......+.........+++.+++ .++ +...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~- 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP- 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC-
Confidence 3456788888888766542 223 67777543221 111122222222456788998888 444 4444
Q ss_pred cEEEE-Ec
Q 018858 126 DVKII-DI 132 (349)
Q Consensus 126 ~i~i~-d~ 132 (349)
.|..+ |.
T Consensus 91 ~i~~~~d~ 98 (367)
T TIGR02604 91 DILFLRDK 98 (367)
T ss_pred eEEEEeCC
Confidence 34434 44
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.049 Score=49.71 Aligned_cols=129 Identities=12% Similarity=0.152 Sum_probs=76.8
Q ss_pred eeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECC--CCcEEE-----EeecCCCCeEEEEEec---CCCEEEEEeCCC
Q 018858 11 LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLR--SKDVQL-----VTDVGNGPVTSLCFKS---GNEDIIYVSSGK 80 (349)
Q Consensus 11 l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~--~~~~~~-----~~~~~~~~v~~~~~~~---~~~~l~~~~~dg 80 (349)
+++..+.|-.+.|...+...+. -.-|.+.|||++ .|+... ....-...+.-+.|.| +.-++..+-.++
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~ 205 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG 205 (1283)
T ss_pred HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence 4566677777777543233333 333778999875 344322 2222234445555654 566777777788
Q ss_pred eEEEEEccCCCcccceeeccCcccceEEE-----------EEccCCCEEEEEcCCCcEEEEEcC-----CceEeceeccc
Q 018858 81 EVKSFDVHMPASWRPLESYNYNKEEINQI-----------VCNPKSSFLACADDGGDVKIIDIR-----QHCLYKSLRAG 144 (349)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~-----------~~~~~~~~l~~~~~dg~i~i~d~~-----~~~~~~~~~~~ 144 (349)
.+++..+.+... ..+..|...+..+ ..+|||..|+.++.||.++.|.+. ...++...+ .
T Consensus 206 ~i~lL~~~ra~~----~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewk-p 280 (1283)
T KOG1916|consen 206 EIRLLNINRALR----SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWK-P 280 (1283)
T ss_pred ceeEeeechHHH----HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccC-C
Confidence 888887764211 2223344433332 368999999999999998888764 334455555 5
Q ss_pred cc
Q 018858 145 HS 146 (349)
Q Consensus 145 ~~ 146 (349)
|.
T Consensus 281 hd 282 (1283)
T KOG1916|consen 281 HD 282 (1283)
T ss_pred CC
Confidence 55
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.47 E-value=2 Score=34.26 Aligned_cols=93 Identities=14% Similarity=0.143 Sum_probs=56.4
Q ss_pred EEEEEecCCC-EEEEEeCCC-eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcC-----CCcEEEEEcCC
Q 018858 62 TSLCFKSGNE-DIIYVSSGK-EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-----GGDVKIIDIRQ 134 (349)
Q Consensus 62 ~~~~~~~~~~-~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~ 134 (349)
..++++|.-. -++.+-.-| ...++|....+....+..... ....-.=.|+|+|.+|...-. .|.|-|||.+.
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~-RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEG-RHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccC-ceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence 4566777433 345554444 356788876654443332211 111222468999999876543 37799999984
Q ss_pred c-eEeceeccccccceeEEEEcc
Q 018858 135 H-CLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 135 ~-~~~~~~~~~~~~~v~~~~~~~ 156 (349)
+ +.+.++. .|.-....+.+.+
T Consensus 150 ~fqrvgE~~-t~GiGpHev~lm~ 171 (366)
T COG3490 150 GFQRVGEFS-THGIGPHEVTLMA 171 (366)
T ss_pred ccceecccc-cCCcCcceeEEec
Confidence 3 4456666 6776777888888
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=94.15 E-value=2.5 Score=34.16 Aligned_cols=116 Identities=11% Similarity=0.178 Sum_probs=65.5
Q ss_pred eeeEEEEecCCCceEEEeCCCCcEEEEECC------CC-cEEEEeec-----CCCCeEEEEEecCCC------------E
Q 018858 17 TATCCIASRDRPGFVASSGEDGCICWFDLR------SK-DVQLVTDV-----GNGPVTSLCFKSGNE------------D 72 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~~------------~ 72 (349)
.-+.|+++|. +.+-++....+...+||.. .. .++.++.. .....+.+.|+.... .
T Consensus 24 N~WGia~~p~-~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPG-GPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCC-CCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 4578999997 6666666667889999986 12 23344442 124567777764332 3
Q ss_pred EEEEeCCCeEEEEEccCCCcc--cceeeccC-cccce-EEEEEcc--CCCEEEEE-cCCCcEEEEEcC
Q 018858 73 IIYVSSGKEVKSFDVHMPASW--RPLESYNY-NKEEI-NQIVCNP--KSSFLACA-DDGGDVKIIDIR 133 (349)
Q Consensus 73 l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~-~~~~v-~~~~~~~--~~~~l~~~-~~dg~i~i~d~~ 133 (349)
++.+++||+|.-|...-.... .....+.. ....| ..+++.. .+.+|..+ -..+.|.+||-.
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~ 170 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS 170 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc
Confidence 677889999999985432210 11111111 11222 3455543 24455433 356778888743
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.54 Score=36.53 Aligned_cols=67 Identities=9% Similarity=0.091 Sum_probs=46.3
Q ss_pred EecCCCEEEEEeCCCeEEEEEccCCCcccce----eecc-------CcccceEEEEEccCCCEEEEEcCCCcEEEEEcC
Q 018858 66 FKSGNEDIIYVSSGKEVKSFDVHMPASWRPL----ESYN-------YNKEEINQIVCNPKSSFLACADDGGDVKIIDIR 133 (349)
Q Consensus 66 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 133 (349)
+..+++++++.+.+|.+++||+.+++....- ..+. .....|..+.++.+|.-+++-+ +|..+.|+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 4456889999999999999999986432211 1111 2345678888888887666554 4778888865
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=94.11 E-value=1.7 Score=33.13 Aligned_cols=104 Identities=13% Similarity=0.197 Sum_probs=63.1
Q ss_pred ceEEEeCCCCcEEEEECC--CCcEEEEeecCCCCeEEEEEecCCCEEEEEeCC---C---eEEEE-EccCC----Cccc-
Q 018858 29 GFVASSGEDGCICWFDLR--SKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG---K---EVKSF-DVHMP----ASWR- 94 (349)
Q Consensus 29 ~~l~t~~~dg~i~vwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g---~i~iw-d~~~~----~~~~- 94 (349)
+.|+.+...+.|.+|++. ..+.+.++.. -+.|..+.++..|++|++--.+ . .+++| +++.. ....
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 444444555789999988 3345666663 3789999999999999986432 2 56665 33221 0000
Q ss_pred -----------------cee--eccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCc
Q 018858 95 -----------------PLE--SYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQH 135 (349)
Q Consensus 95 -----------------~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 135 (349)
.+. .++. ...+.+++..|-..-|+.|+. +.+.+|.++..
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl-~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~ 165 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPL-SEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQ 165 (215)
T ss_pred EEcccccccCCCCccccceEEEEecC-CCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEE
Confidence 000 1111 246778888886555666665 47889987643
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=94.09 E-value=5.1 Score=37.41 Aligned_cols=112 Identities=13% Similarity=0.063 Sum_probs=64.0
Q ss_pred eeeeEEEEecCCCceEEEeC-----CCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCC------CeEEE
Q 018858 16 ATATCCIASRDRPGFVASSG-----EDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG------KEVKS 84 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~-----~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i 84 (349)
-.+..+.++|+ +++|+.+. ....|++-|+.+++.+...-.... ..++|.++++.|+....+ ..|+.
T Consensus 127 ~~l~~~~~Spd-g~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPD-NTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCC-CCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 34677888998 77766432 234588899988764322111111 458999999887776542 36777
Q ss_pred EEccCCCc-ccceeeccCcccceE-EEEEccCCCEEEEEcC---CCcEEEEEc
Q 018858 85 FDVHMPAS-WRPLESYNYNKEEIN-QIVCNPKSSFLACADD---GGDVKIIDI 132 (349)
Q Consensus 85 wd~~~~~~-~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~---dg~i~i~d~ 132 (349)
+++.++.. ...+.. ....... ....+.++++++..+. ++.+.+++.
T Consensus 204 h~lgt~~~~d~lv~~--e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 204 HTIGTPASQDELVYE--EKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred EECCCChhHCeEEEe--eCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 88877621 122222 1112222 2233447776654433 456888885
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.06 E-value=1.1 Score=43.29 Aligned_cols=93 Identities=11% Similarity=0.129 Sum_probs=54.9
Q ss_pred CCCCcEEEEECCCCcEEEEeecCCCCeEEEEE--------ecCCCEEEEEeCCCeEEEEEccCCCcccceeec------c
Q 018858 35 GEDGCICWFDLRSKDVQLVTDVGNGPVTSLCF--------KSGNEDIIYVSSGKEVKSFDVHMPASWRPLESY------N 100 (349)
Q Consensus 35 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~ 100 (349)
+.|..+.+|+++++.....+.+-...|..+.. -|.=++++....--.|.++-+...+.......+ .
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 44788999999997777777776666666654 233355555555666777755422111111111 1
Q ss_pred CcccceEEEEEccCCCEEEEEcCCCcEE
Q 018858 101 YNKEEINQIVCNPKSSFLACADDGGDVK 128 (349)
Q Consensus 101 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 128 (349)
.....|.++....+|+.|++| .||.|+
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G-~dg~ly 202 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAG-RDGNLY 202 (1311)
T ss_pred cCCceEEEEEeccCCcEEEee-cCCCEE
Confidence 123467888877778766665 555443
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.00 E-value=2.2 Score=36.46 Aligned_cols=92 Identities=12% Similarity=0.121 Sum_probs=57.4
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEe----
Q 018858 63 SLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLY---- 138 (349)
Q Consensus 63 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---- 138 (349)
.+-|.. .+..+.+...|.+.-|.+.-...-.++..-...+++|.++.|++|.+.+|+--.+..|.+++....+..
T Consensus 27 gvFfDD-aNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~ 105 (657)
T KOG2377|consen 27 GVFFDD-ANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT 105 (657)
T ss_pred ceeecc-CcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH
Confidence 344443 333444444566677766543322233332334579999999999999999999999999998533322
Q ss_pred ceeccccccceeEEEEcc
Q 018858 139 KSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 139 ~~~~~~~~~~v~~~~~~~ 156 (349)
.+.+ .....|....|..
T Consensus 106 ~~ck-~k~~~IlGF~W~~ 122 (657)
T KOG2377|consen 106 QECK-TKNANILGFCWTS 122 (657)
T ss_pred HHhc-cCcceeEEEEEec
Confidence 2223 2344578888876
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.01 Score=50.05 Aligned_cols=129 Identities=11% Similarity=0.138 Sum_probs=87.7
Q ss_pred EEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEE-eCCCeEEEEEccCCCcccceeec
Q 018858 21 CIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYV-SSGKEVKSFDVHMPASWRPLESY 99 (349)
Q Consensus 21 ~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~ 99 (349)
..|-|.+.+ ++.++.+..+..||-. ++...... ..+....++|..+++.++.. -..+.+.+||+.+... ..+..-
T Consensus 40 ~~w~~e~~n-lavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqLE~g 115 (615)
T KOG2247|consen 40 HRWRPEGHN-LAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQLESG 115 (615)
T ss_pred eeEecCCCc-eehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHHhcc
Confidence 467787444 7777778888888854 33333333 34556678898888876554 4568999999985321 112111
Q ss_pred cCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEcc
Q 018858 100 NYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 100 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
..+ .-.-+.|++....++.+...|.+.+++..+.+.+...- .|...+.++++.+
T Consensus 116 g~~--s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~G-kh~RRgtq~av~l 169 (615)
T KOG2247|consen 116 GTS--SKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMG-KHQRRGTQIAVTL 169 (615)
T ss_pred Ccc--hHHHHhhccCCccccccccccceEEEeccchhhhhhhc-ccccceeEEEecc
Confidence 111 12227888888899999999999999988766555544 4888899999988
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.80 E-value=2.9 Score=33.59 Aligned_cols=104 Identities=14% Similarity=0.164 Sum_probs=66.4
Q ss_pred CceEEEeCCCCcEEEEECCCCc---EEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCccc
Q 018858 28 PGFVASSGEDGCICWFDLRSKD---VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKE 104 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 104 (349)
|++...+..|.-+.+.|+.+.+ +..........-..++.| |++-..+..|+-+.+-|+........+.... ...
T Consensus 138 Gn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~ 214 (370)
T COG5276 138 GNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGP 214 (370)
T ss_pred CCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCC
Confidence 6677777756666777876543 233444444444566666 7777778889999999999766555444433 123
Q ss_pred ceEEEEEccCCCEEEEEcCCCcEEEEEcCCce
Q 018858 105 EINQIVCNPKSSFLACADDGGDVKIIDIRQHC 136 (349)
Q Consensus 105 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 136 (349)
.+..+..+++-.+++...+ -+.+-|..+.+
T Consensus 215 g~~sv~vsdnr~y~vvy~e--gvlivd~s~~s 244 (370)
T COG5276 215 GTYSVSVSDNRAYLVVYDE--GVLIVDVSGPS 244 (370)
T ss_pred ceEEEEecCCeeEEEEccc--ceEEEecCCCC
Confidence 6777777776666665443 47777776554
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.76 E-value=1.7 Score=37.64 Aligned_cols=53 Identities=8% Similarity=0.135 Sum_probs=39.0
Q ss_pred CccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCC
Q 018858 278 RGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS 340 (349)
Q Consensus 278 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 340 (349)
...|+|.+|..|.|++||.-.. +....+.+....|..+.... +|+++++.+..
T Consensus 572 esGyIa~as~kGDirLyDRig~---------rAKtalP~lG~aIk~idvta-~Gk~ilaTCk~ 624 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGK---------RAKTALPGLGDAIKHIDVTA-NGKHILATCKN 624 (776)
T ss_pred cCceEEEecCCCceeeehhhcc---------hhhhcCcccccceeeeEeec-CCcEEEEeecc
Confidence 4569999999999999997653 33335566778888888876 77776665543
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.0092 Score=50.29 Aligned_cols=142 Identities=17% Similarity=0.212 Sum_probs=92.1
Q ss_pred eEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecC
Q 018858 106 INQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIP 185 (349)
Q Consensus 106 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (349)
.-...|-|.+..++.++.+-.+..||- .++...... ..+....++|..
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n--~tg~aldm~wDk----------------------------- 84 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDK-AGQVILELN--PTGKALDMAWDK----------------------------- 84 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhh-hcceecccC--CchhHhhhhhcc-----------------------------
Confidence 344677888877888888888999984 344433333 345566677766
Q ss_pred cccccCCCCcE-EEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecC-C
Q 018858 186 DADMLDKTNKI-CVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGG-H 263 (349)
Q Consensus 186 ~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h 263 (349)
++.. ++.+-..+.+.+||+.+... .++ .+.+ |
T Consensus 85 -------egdvlavlAek~~piylwd~n~eyt-------------------------------------qqL--E~gg~~ 118 (615)
T KOG2247|consen 85 -------EGDVLAVLAEKTGPIYLWDVNSEYT-------------------------------------QQL--ESGGTS 118 (615)
T ss_pred -------ccchhhhhhhcCCCeeechhhhhhH-------------------------------------HHH--hccCcc
Confidence 3443 44566788999999986310 000 1111 2
Q ss_pred CcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCC
Q 018858 264 TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSK 341 (349)
Q Consensus 264 ~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 341 (349)
.... +.|+ +....++.+-..|.+.|++.... +.+.....|..+++++++.+.+ +.+.++.|.
T Consensus 119 s~sl--l~ws---Kg~~el~ig~~~gn~viynhgts---------R~iiv~Gkh~RRgtq~av~lEd--~vil~dcd~ 180 (615)
T KOG2247|consen 119 SKSL--LAWS---KGTPELVIGNNAGNIVIYNHGTS---------RRIIVMGKHQRRGTQIAVTLED--YVILCDCDN 180 (615)
T ss_pred hHHH--Hhhc---cCCccccccccccceEEEeccch---------hhhhhhcccccceeEEEecccc--eeeecCcHH
Confidence 2222 6677 77788888888899999998875 3333444488899999997743 566666554
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=93.45 E-value=7.1 Score=36.98 Aligned_cols=118 Identities=10% Similarity=-0.044 Sum_probs=65.9
Q ss_pred ceeeeEEEEecC--CCc---eEEEeCCCCcEEEE-ECCCCcEEEEe--ec--CCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 15 KATATCCIASRD--RPG---FVASSGEDGCICWF-DLRSKDVQLVT--DV--GNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 15 ~~~i~~~~~~~~--~~~---~l~t~~~dg~i~vw-d~~~~~~~~~~--~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
...|.|+.++|- +.+ +++.|..+..+.+- -..+...+... .+ -...|....+-.+..+|.++..||.+.-
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~ 609 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY 609 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence 467999999974 233 78888776555433 33333333222 11 1234555556666889999999998877
Q ss_pred EEcc--CCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcC
Q 018858 85 FDVH--MPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIR 133 (349)
Q Consensus 85 wd~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 133 (349)
+.+. ++......+. .-...++.--.|+..++.-+.+..|.-..+|.-+
T Consensus 610 fv~d~~tg~lsd~Kk~-~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n 659 (1096)
T KOG1897|consen 610 FVLDINTGQLSDRKKV-TLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSN 659 (1096)
T ss_pred EEEEcccceEcccccc-ccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecC
Confidence 6554 3322111111 1123455555666655544445556666666643
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=93.45 E-value=7 Score=36.87 Aligned_cols=68 Identities=13% Similarity=0.080 Sum_probs=43.7
Q ss_pred CceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeE-------------EEEEec--CCCEEEEEeC----------CCeE
Q 018858 28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVT-------------SLCFKS--GNEDIIYVSS----------GKEV 82 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~-------------~~~~~~--~~~~l~~~~~----------dg~i 82 (349)
+..++.++.|+.+.-.|.++|+.+..+.. ++.|. .+.-.| .+..+++++. +|.|
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence 34788888899999999999999876642 11110 011112 2345666642 5889
Q ss_pred EEEEccCCCcccce
Q 018858 83 KSFDVHMPASWRPL 96 (349)
Q Consensus 83 ~iwd~~~~~~~~~~ 96 (349)
+-+|.++++..-..
T Consensus 339 ~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 339 RAFDVNTGALVWAW 352 (764)
T ss_pred EEEECCCCcEeeEE
Confidence 99999998755433
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=93.37 E-value=1.7 Score=39.75 Aligned_cols=104 Identities=13% Similarity=0.078 Sum_probs=69.0
Q ss_pred CceEEEeCCCCcEEEEECCC-------C----c---------EEEEeecCCCCeEEEEEe--cCCCEEEEEeCCCeEEEE
Q 018858 28 PGFVASSGEDGCICWFDLRS-------K----D---------VQLVTDVGNGPVTSLCFK--SGNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~-------~----~---------~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~iw 85 (349)
...|+.+..||.|.+|..++ . + +...+. -...+.+++++ ...++||+++....|.||
T Consensus 114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 56888999999999997531 1 0 111222 23578899998 778888888888888888
Q ss_pred EccCCCcccceeeccCcccceEEEEEccCC---C---EEEEEcCCCcEEEEEc
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPKS---S---FLACADDGGDVKIIDI 132 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~---~l~~~~~dg~i~i~d~ 132 (349)
-+...........-..+...|.+++|-++. . .+++++-.|.+.+|++
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 665421111111111144568888887643 2 7778888999999887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.44 Score=40.35 Aligned_cols=169 Identities=14% Similarity=0.114 Sum_probs=95.3
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEE-EEe-ecCCC----CeE-EEEEecCCCEEEEEe
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQ-LVT-DVGNG----PVT-SLCFKSGNEDIIYVS 77 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~-~~~-~~~~~----~v~-~~~~~~~~~~l~~~~ 77 (349)
.+.++.|..-..+|..+...|+ ++.++.-+. .++.++++.+.... ..+ ....+ .|+ .+..-..|..++++.
T Consensus 210 ~e~i~~L~~~~~~v~qllL~Pd-g~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~ 287 (733)
T COG4590 210 QEIIRLLSVPFSDVSQLLLTPD-GKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVH 287 (733)
T ss_pred hhhhhhcCCCccchHhhEECCC-CCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEc
Confidence 3445556666678888889998 787776554 57888988765431 111 11111 122 122233566788889
Q ss_pred CCCeEEEE-EccCCCcc--cceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEE
Q 018858 78 SGKEVKSF-DVHMPASW--RPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQF 154 (349)
Q Consensus 78 ~dg~i~iw-d~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 154 (349)
.||.|.-| |++.+... ..+..++-...++..+.-..+.+-+++-+.+|++.++.-...+.+-.-. --..+.-+++
T Consensus 288 ~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~--~~~~~~~~~~ 365 (733)
T COG4590 288 EDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER--AYQAPQLVAM 365 (733)
T ss_pred CCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh--hhcCcceeee
Confidence 99988877 66543221 1112222112233333322233567777788888887654433322211 2224566778
Q ss_pred ccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCc
Q 018858 155 IPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE 214 (349)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 214 (349)
+| ++.++++- ..|.++++.+++.
T Consensus 366 Sp------------------------------------~~~~Ll~e-~~gki~~~~l~Nr 388 (733)
T COG4590 366 SP------------------------------------NQAYLLSE-DQGKIRLAQLENR 388 (733)
T ss_pred Cc------------------------------------ccchheee-cCCceEEEEecCC
Confidence 88 67777654 4577888888764
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=92.88 E-value=4 Score=32.51 Aligned_cols=237 Identities=9% Similarity=0.034 Sum_probs=125.5
Q ss_pred eEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceee
Q 018858 19 TCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLES 98 (349)
Q Consensus 19 ~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 98 (349)
..++-.|| |..-+++...+.|--.|..+++....--+.......+..-|++..-++-+.. .|.-.|-++.+. ..+..
T Consensus 65 ~dvapapd-G~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ev-t~f~l 141 (353)
T COG4257 65 FDVAPAPD-GAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEV-TRFPL 141 (353)
T ss_pred cccccCCC-CceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccce-EEeec
Confidence 44566676 7777777777777777888888655444455556677778887765553332 344445444321 11111
Q ss_pred -ccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCc
Q 018858 99 -YNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPA 177 (349)
Q Consensus 99 -~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (349)
............|.+.|++-+++.. |.---.|-. ...++.+........+.|+..|
T Consensus 142 p~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa-~~~i~vfpaPqG~gpyGi~atp--------------------- 198 (353)
T COG4257 142 PLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPA-RNVISVFPAPQGGGPYGICATP--------------------- 198 (353)
T ss_pred ccccCCCcccceeeCCCccEEEeecc-ccceecCcc-cCceeeeccCCCCCCcceEECC---------------------
Confidence 1122345677888898888877653 211111111 1122333322334456677777
Q ss_pred eeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCC-CCCccceeeeeccccEEEEeeeee---ecCc-e
Q 018858 178 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKST-TKPLKGSQSTSKVNIRDAEMEILD---QSGG-K 252 (349)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~ 252 (349)
+|..-++.-.+..|-..|...+......... .....+.+--+|.|+..++....- .... .
T Consensus 199 ---------------dGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~ 263 (353)
T COG4257 199 ---------------DGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSV 263 (353)
T ss_pred ---------------CCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccc
Confidence 6776666556666766676655322222222 234455566666776666421110 0000 0
Q ss_pred eeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCC
Q 018858 253 RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 253 ~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 299 (349)
..-....+.+.+..-.++.+. ..++.-.+--.-|.|.-+|-++.
T Consensus 264 ~sW~eypLPgs~arpys~rVD---~~grVW~sea~agai~rfdpeta 307 (353)
T COG4257 264 TSWIEYPLPGSKARPYSMRVD---RHGRVWLSEADAGAIGRFDPETA 307 (353)
T ss_pred ccceeeeCCCCCCCcceeeec---cCCcEEeeccccCceeecCcccc
Confidence 111223455555556677766 55555554444566666776663
|
|
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=92.48 E-value=0.89 Score=41.12 Aligned_cols=75 Identities=8% Similarity=0.183 Sum_probs=45.6
Q ss_pred cCCCEEEEEeCCCeEEEEEccC----CCcccc-----------eeec--------cCcccceEEEEEcc----CCCEEEE
Q 018858 68 SGNEDIIYVSSGKEVKSFDVHM----PASWRP-----------LESY--------NYNKEEINQIVCNP----KSSFLAC 120 (349)
Q Consensus 68 ~~~~~l~~~~~dg~i~iwd~~~----~~~~~~-----------~~~~--------~~~~~~v~~~~~~~----~~~~l~~ 120 (349)
++...++.+..||.+....... +..... +..+ ......+..++++. +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3677888888999888877664 110000 0000 00123345566655 6689999
Q ss_pred EcCCCcEEEEEcCCceEeceec
Q 018858 121 ADDGGDVKIIDIRQHCLYKSLR 142 (349)
Q Consensus 121 ~~~dg~i~i~d~~~~~~~~~~~ 142 (349)
.+.|+.+|+||+.+++++....
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEec
Confidence 9999999999999999977664
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.47 E-value=7.4 Score=34.61 Aligned_cols=64 Identities=8% Similarity=0.021 Sum_probs=31.8
Q ss_pred CCCEEEEEeCC-----CeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCC--CcEEEEEcCCc
Q 018858 69 GNEDIIYVSSG-----KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDG--GDVKIIDIRQH 135 (349)
Q Consensus 69 ~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~ 135 (349)
++..++.|+.+ ..+..||..++. ...+............+. -++...+.|+.+ ..+..||..++
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~-W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n 341 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNN-WIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDA 341 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCE-EEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCC
Confidence 34555666654 256778877642 222222221111122222 356677777754 34667776543
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=92.44 E-value=6.1 Score=33.51 Aligned_cols=144 Identities=11% Similarity=0.147 Sum_probs=81.0
Q ss_pred CceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEe----cCCCE--EEEEeC-C---CeEEEEEccCCC-cccce
Q 018858 28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFK----SGNED--IIYVSS-G---KEVKSFDVHMPA-SWRPL 96 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~----~~~~~--l~~~~~-d---g~i~iwd~~~~~-~~~~~ 96 (349)
..+++....++-+.+||++ |+.++.+.. +.+..+..- -.++. |+.++. + ..|++|.+.... ....+
T Consensus 68 kSlIigTdK~~GL~VYdL~-Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v 144 (381)
T PF02333_consen 68 KSLIIGTDKKGGLYVYDLD-GKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDV 144 (381)
T ss_dssp G-EEEEEETTTEEEEEETT-S-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-
T ss_pred cceEEEEeCCCCEEEEcCC-CcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEc
Confidence 4577777888999999987 555666642 344444331 23443 455542 2 479999876311 11111
Q ss_pred ee----ccCcccceEEEEE--cc-CCC-EEEEEcCCCcEEEEEcC---Cc----eEeceeccccccceeEEEEccCCCCC
Q 018858 97 ES----YNYNKEEINQIVC--NP-KSS-FLACADDGGDVKIIDIR---QH----CLYKSLRAGHSSICSSVQFIPWKPWE 161 (349)
Q Consensus 97 ~~----~~~~~~~v~~~~~--~~-~~~-~l~~~~~dg~i~i~d~~---~~----~~~~~~~~~~~~~v~~~~~~~~~~~~ 161 (349)
.. +......+..+++ ++ ++. +++....+|.+..|.+. .+ +.+++|. -...+..+....
T Consensus 145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~--~~sQ~EGCVVDD----- 217 (381)
T PF02333_consen 145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK--VGSQPEGCVVDD----- 217 (381)
T ss_dssp CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE---SS-EEEEEEET-----
T ss_pred CCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec--CCCcceEEEEec-----
Confidence 11 0011134566666 34 344 55567788988888775 22 4566666 344677777766
Q ss_pred CCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEcc
Q 018858 162 GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE 212 (349)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 212 (349)
....|..+-++.-|.-|+.+
T Consensus 218 -------------------------------e~g~LYvgEE~~GIW~y~Ae 237 (381)
T PF02333_consen 218 -------------------------------ETGRLYVGEEDVGIWRYDAE 237 (381)
T ss_dssp -------------------------------TTTEEEEEETTTEEEEEESS
T ss_pred -------------------------------ccCCEEEecCccEEEEEecC
Confidence 56788888888877777776
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=92.43 E-value=6 Score=33.46 Aligned_cols=108 Identities=10% Similarity=0.083 Sum_probs=48.3
Q ss_pred ECCCCcEEEEeecCCCCeEE-----EEEecCCCEEEEEeC-CC--eEEEEEccCCCcccceeeccCcccceEEEEEccCC
Q 018858 44 DLRSKDVQLVTDVGNGPVTS-----LCFKSGNEDIIYVSS-GK--EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS 115 (349)
Q Consensus 44 d~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 115 (349)
|..+|-.+..+......... =+|.++|+.|+.++. +| .+.+.|+.+++.. .+....+ .......++|++
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~-QLTdg~g--~~~~g~~~s~~~ 92 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEIT-QLTDGPG--DNTFGGFLSPDD 92 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEE-E---SS---B-TTT-EE-TTS
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEE-ECccCCC--CCccceEEecCC
Confidence 45566655555433322222 246788987766654 44 6777788875422 2222111 112235567888
Q ss_pred CEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEc
Q 018858 116 SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFI 155 (349)
Q Consensus 116 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 155 (349)
+.++-......|+-.|+++.+....+. .....+-...|.
T Consensus 93 ~~~~Yv~~~~~l~~vdL~T~e~~~vy~-~p~~~~g~gt~v 131 (386)
T PF14583_consen 93 RALYYVKNGRSLRRVDLDTLEERVVYE-VPDDWKGYGTWV 131 (386)
T ss_dssp SEEEEEETTTEEEEEETTT--EEEEEE---TTEEEEEEEE
T ss_pred CeEEEEECCCeEEEEECCcCcEEEEEE-CCccccccccee
Confidence 777655455688999999876544444 333333334443
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.38 E-value=4.2 Score=31.54 Aligned_cols=102 Identities=11% Similarity=-0.067 Sum_probs=51.6
Q ss_pred eEEEeCCCCcEEEEECC--CCcEEEEee---c--CCCCeEEEEEecCCCEEEEEeCC---------CeEEEEEccCCCcc
Q 018858 30 FVASSGEDGCICWFDLR--SKDVQLVTD---V--GNGPVTSLCFKSGNEDIIYVSSG---------KEVKSFDVHMPASW 93 (349)
Q Consensus 30 ~l~t~~~dg~i~vwd~~--~~~~~~~~~---~--~~~~v~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~ 93 (349)
+.+.++..-.|.-||-. .-....++. . .......-..+|+|++.+-.-.| |.++.|-..- .+
T Consensus 73 ~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h--~v 150 (310)
T KOG4499|consen 73 FAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH--QV 150 (310)
T ss_pred EEEeecceEEEEEcccccceeeeeeeccccCchHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCC--Cc
Confidence 44445544455567732 222233321 1 12334455678999984332222 5666665431 12
Q ss_pred cceeeccCcccceEEEEEccCCCEE-EEEcCCCcEEEEE--cCCce
Q 018858 94 RPLESYNYNKEEINQIVCNPKSSFL-ACADDGGDVKIID--IRQHC 136 (349)
Q Consensus 94 ~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d--~~~~~ 136 (349)
..+.. .-.--..++|+.+.+.+ ++-+.+-.|.-|| +.+|.
T Consensus 151 ~~i~~---~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~ 193 (310)
T KOG4499|consen 151 ELIWN---CVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGD 193 (310)
T ss_pred eeeeh---hccCCccccccccCcEEEEEccCceEEeeeecCCCccc
Confidence 22221 12334578898777655 4556666787777 54554
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=92.21 E-value=4.2 Score=31.14 Aligned_cols=30 Identities=13% Similarity=0.233 Sum_probs=21.0
Q ss_pred cccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 317 LNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 317 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
...++.+++..|..|++|+ |+ ++++.+|.+
T Consensus 133 l~~~p~ciaCC~~tG~LlV-g~-~~~l~lf~l 162 (215)
T PF14761_consen 133 LSEPPLCIACCPVTGNLLV-GC-GNKLVLFTL 162 (215)
T ss_pred CCCCCCEEEecCCCCCEEE-Ec-CCEEEEEEE
Confidence 3567889999998887554 43 457777764
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.51 E-value=0.16 Score=46.68 Aligned_cols=74 Identities=12% Similarity=0.122 Sum_probs=53.2
Q ss_pred cceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEee----------cCCCCcE
Q 018858 265 AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTT----------PTESENL 334 (349)
Q Consensus 265 ~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----------~~~~~~l 334 (349)
..+.-+.|.|+.++.-++..+-.++.+++...++. ....+.+|...++.+++. ++||..+
T Consensus 181 s~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra----------~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~ 250 (1283)
T KOG1916|consen 181 SDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRA----------LRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVF 250 (1283)
T ss_pred CCcceeeecccccccceeeeccCCCceeEeeechH----------HHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEE
Confidence 44566777777678888888888899999888774 224445576665555433 3488888
Q ss_pred EEeeCCCeEEEeeC
Q 018858 335 VVCDTSKVVKVYSI 348 (349)
Q Consensus 335 ~~~~~dg~i~iw~~ 348 (349)
+.++.||.++.|.+
T Consensus 251 a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 251 AWAISDGSVGFYQI 264 (1283)
T ss_pred EEeecCCccceeee
Confidence 99999999888864
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.41 E-value=1.4 Score=37.61 Aligned_cols=79 Identities=13% Similarity=0.117 Sum_probs=45.5
Q ss_pred eecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcc--cceeeccCc-ccceE-EEEEccCCCEEEEEcCCCcEEE
Q 018858 54 TDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASW--RPLESYNYN-KEEIN-QIVCNPKSSFLACADDGGDVKI 129 (349)
Q Consensus 54 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~-~~~v~-~~~~~~~~~~l~~~~~dg~i~i 129 (349)
+......|..+-..|+|+.+..-+. .++.++++.+.... +.....++. ...|+ .+..-..+.-+++++.||.|.-
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQ 294 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQ 294 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceee
Confidence 3444567778888999998887765 67888888753211 111111110 01122 1122234566788889999887
Q ss_pred E-EcC
Q 018858 130 I-DIR 133 (349)
Q Consensus 130 ~-d~~ 133 (349)
| |++
T Consensus 295 WFdvr 299 (733)
T COG4590 295 WFDVR 299 (733)
T ss_pred eeeee
Confidence 7 554
|
|
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=91.09 E-value=7.2 Score=31.65 Aligned_cols=118 Identities=16% Similarity=0.243 Sum_probs=70.2
Q ss_pred CCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEe------CCCeEEEEEccCCCcccceee-c-cCcccceEE
Q 018858 37 DGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVS------SGKEVKSFDVHMPASWRPLES-Y-NYNKEEINQ 108 (349)
Q Consensus 37 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~-~-~~~~~~v~~ 108 (349)
-..|++||..+.+....-.+-.+.|+.+.|..+.+.++.|. ....+..||+.+.. ...+.. . ....+++..
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-WSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-eeecCCcccccCCCcEEE
Confidence 35699999887765444444567899999987666666664 34578899988642 222222 1 112366777
Q ss_pred EEEcc-CC-CEEEEEc-CCC--cEEEEEcCCceEece-eccccccceeEEEEcc
Q 018858 109 IVCNP-KS-SFLACAD-DGG--DVKIIDIRQHCLYKS-LRAGHSSICSSVQFIP 156 (349)
Q Consensus 109 ~~~~~-~~-~~l~~~~-~dg--~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~~ 156 (349)
+.+.. ++ +..+.|. .++ .|..||=.+...+.. .. .....|..+.+-|
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~-~~~t~I~~l~~~~ 146 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDIL-GSGTTIRGLQVLP 146 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEcCCceEecccccc-CCCCEEEEEEEEe
Confidence 77643 33 3444443 233 477777555555444 22 3355677777766
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.07 E-value=7.1 Score=34.24 Aligned_cols=81 Identities=15% Similarity=0.131 Sum_probs=47.7
Q ss_pred cceEEEEEeeecCCccEEEEeeCCCeEEEEecC---------CCcceec---ccccceeeeccccccceEEEEeecCC--
Q 018858 265 AAASCVAFSMFGERGKYLISGGNDKLVKVWDCS---------RFQGVQT---SINNDLLIKNINLNKKVNWLCTTPTE-- 330 (349)
Q Consensus 265 ~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~---------~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~-- 330 (349)
-.|..+..+ +.|..++-.|.+|.+.++=.+ .++.... ..-...+.... ..-.+...+|+|..
T Consensus 104 feV~~vl~s---~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss-~~ltl~Qa~WHP~S~~ 179 (741)
T KOG4460|consen 104 FEVYQVLLS---PTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSS-TSLTLKQAAWHPSSIL 179 (741)
T ss_pred EEEEEEEec---CCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccC-CceeeeeccccCCccC
Confidence 357788888 888888888888866554311 1111000 00000111111 12245667899854
Q ss_pred CCcEEEeeCCCeEEEeeCC
Q 018858 331 SENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 331 ~~~l~~~~~dg~i~iw~~~ 349 (349)
...|..-+.|..|++||++
T Consensus 180 D~hL~iL~sdnviRiy~lS 198 (741)
T KOG4460|consen 180 DPHLVLLTSDNVIRIYSLS 198 (741)
T ss_pred CceEEEEecCcEEEEEecC
Confidence 4578888999999999975
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=90.97 E-value=1.4 Score=23.32 Aligned_cols=40 Identities=15% Similarity=0.155 Sum_probs=25.8
Q ss_pred cCCCceEE-EeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEE
Q 018858 25 RDRPGFVA-SSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCF 66 (349)
Q Consensus 25 ~~~~~~l~-t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~ 66 (349)
|+ ++.|+ +...++.|.++|..+++.+..+... .....++|
T Consensus 1 pd-~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PD-GTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CC-CCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 44 45444 4556789999999988887777753 33334443
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.76 E-value=7 Score=37.05 Aligned_cols=63 Identities=10% Similarity=0.172 Sum_probs=40.4
Q ss_pred CceEEEeCCCCcEEEEECCCCcEE---EE------e--ecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 018858 28 PGFVASSGEDGCICWFDLRSKDVQ---LV------T--DVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA 91 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~~~---~~------~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 91 (349)
++.+..|+.+|.+.+|.+...... .. + ..+..+|..+...+.-+.++.- .|+.+.++++.+.+
T Consensus 26 ~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~l-~dsqi~~~~l~~~~ 99 (877)
T KOG2063|consen 26 GNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLIL-SDSQIAVHKLPELE 99 (877)
T ss_pred CCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchhee-cCCcceeeecCccc
Confidence 678999999999999998754221 11 0 0134666666666555544443 47778888877543
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=90.76 E-value=1.5 Score=23.23 Aligned_cols=30 Identities=17% Similarity=0.321 Sum_probs=22.8
Q ss_pred cCCCEEEEEc-CCCcEEEEEcCCceEeceec
Q 018858 113 PKSSFLACAD-DGGDVKIIDIRQHCLYKSLR 142 (349)
Q Consensus 113 ~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~ 142 (349)
|++++|+++. .++.|.++|..+++.+..+.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~ 31 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP 31 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence 4666665544 57889999999888887776
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=90.22 E-value=4.8 Score=28.19 Aligned_cols=72 Identities=15% Similarity=0.142 Sum_probs=42.8
Q ss_pred EEEccCCCEEEEEcCCCcEEEEEcCCce--------EeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeE
Q 018858 109 IVCNPKSSFLACADDGGDVKIIDIRQHC--------LYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVH 180 (349)
Q Consensus 109 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (349)
-.|......|++++.-|.|.|++..... .+..+. .+..|++++-.+
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN--in~~italaaG~------------------------ 57 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN--INQEITALAAGR------------------------ 57 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE--CCCceEEEEEEe------------------------
Confidence 3455555678888888999999876332 222222 344555554333
Q ss_pred EeecCcccccCCCCcEEEEEcCCCeEEEEEccCc
Q 018858 181 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESE 214 (349)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 214 (349)
+.| +.....|+.|+. ..|..||...+
T Consensus 58 ---l~~----~~~~D~LliGt~-t~llaYDV~~N 83 (136)
T PF14781_consen 58 ---LKP----DDGRDCLLIGTQ-TSLLAYDVENN 83 (136)
T ss_pred ---cCC----CCCcCEEEEecc-ceEEEEEcccC
Confidence 100 114567777765 56889999864
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=90.01 E-value=8.6 Score=30.77 Aligned_cols=91 Identities=14% Similarity=0.147 Sum_probs=54.5
Q ss_pred CeEEEEEecCCCEEEEEe---CCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEE-cCCc
Q 018858 60 PVTSLCFKSGNEDIIYVS---SGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIID-IRQH 135 (349)
Q Consensus 60 ~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d-~~~~ 135 (349)
.+.+.+++++++.++... ....+.++.... ...... . ...+....|.+++...+....+...+++. ..++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~--~~~~~~--~--g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG--PVRPVL--T--GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASG 98 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC--cceeec--c--CCccccccccCCCCEEEEEcCCCceEEEEecCCC
Confidence 688899999999887766 234566665442 222221 1 24677789999987777666666666663 2333
Q ss_pred eEe-ceeccc-cccceeEEEEcc
Q 018858 136 CLY-KSLRAG-HSSICSSVQFIP 156 (349)
Q Consensus 136 ~~~-~~~~~~-~~~~v~~~~~~~ 156 (349)
... ...... ....|..+.++|
T Consensus 99 ~~~~~~v~~~~~~~~I~~l~vSp 121 (253)
T PF10647_consen 99 TGEPVEVDWPGLRGRITALRVSP 121 (253)
T ss_pred cceeEEecccccCCceEEEEECC
Confidence 221 111101 112788999998
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.66 E-value=17 Score=33.59 Aligned_cols=32 Identities=9% Similarity=0.009 Sum_probs=26.7
Q ss_pred cceEEEEEeeecCCccEEEEeeCCCeEEEEecCCC
Q 018858 265 AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 265 ~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 299 (349)
+.+..+.+| |+.++|+-=..+|.|.+-+.+..
T Consensus 217 ~~~~ki~VS---~n~~~laLyt~~G~i~~vs~D~~ 248 (829)
T KOG2280|consen 217 SSVVKISVS---PNRRFLALYTETGKIWVVSIDLS 248 (829)
T ss_pred ceEEEEEEc---CCcceEEEEecCCcEEEEecchh
Confidence 567788889 89999998888999998887764
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.51 E-value=5.8 Score=38.77 Aligned_cols=79 Identities=16% Similarity=0.279 Sum_probs=49.0
Q ss_pred CcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcce-e----------c-----ccccceeeeccccccceEEEEee
Q 018858 264 TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGV-Q----------T-----SINNDLLIKNINLNKKVNWLCTT 327 (349)
Q Consensus 264 ~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~-~----------~-----~~~~~~~~~~~~~~~~v~~~~~~ 327 (349)
...|+++... .+|+.+.+|-. | .+|.+.-.... + + .--+.++.....+.++|..+++.
T Consensus 178 g~~V~~I~~t---~nGRIF~~G~d-g--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID 251 (1311)
T KOG1900|consen 178 GVSVNCITYT---ENGRIFFAGRD-G--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID 251 (1311)
T ss_pred CceEEEEEec---cCCcEEEeecC-C--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec
Confidence 4578899877 78888887664 4 35544211000 0 0 00011222234677899999985
Q ss_pred cCCCCcEEEeeCCCeEEEeeCC
Q 018858 328 PTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 328 ~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
. .-..+.+-+..|+|.+|++.
T Consensus 252 ~-SR~IlY~lsek~~v~~Y~i~ 272 (1311)
T KOG1900|consen 252 N-SRNILYVLSEKGTVSAYDIG 272 (1311)
T ss_pred c-ccceeeeeccCceEEEEEcc
Confidence 4 44578888999999999973
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=88.98 E-value=22 Score=34.02 Aligned_cols=65 Identities=15% Similarity=0.168 Sum_probs=42.6
Q ss_pred cceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEE
Q 018858 265 AAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVK 344 (349)
Q Consensus 265 ~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 344 (349)
+.+.++.. -+|+++|.-+ ..|++|++.+. +.+..-..+..++..+...- .++.+++|..=+.+.
T Consensus 830 Gav~aL~~----fngkllA~In--~~vrLye~t~~---------~eLr~e~~~~~~~~aL~l~v-~gdeI~VgDlm~Sit 893 (1096)
T KOG1897|consen 830 GAVYALVE----FNGKLLAGIN--QSVRLYEWTTE---------RELRIECNISNPIIALDLQV-KGDEIAVGDLMRSIT 893 (1096)
T ss_pred cceeehhh----hCCeEEEecC--cEEEEEEcccc---------ceehhhhcccCCeEEEEEEe-cCcEEEEeeccceEE
Confidence 45666654 3788887654 58999999986 45555556666777776644 566777776555444
Q ss_pred E
Q 018858 345 V 345 (349)
Q Consensus 345 i 345 (349)
+
T Consensus 894 l 894 (1096)
T KOG1897|consen 894 L 894 (1096)
T ss_pred E
Confidence 3
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=88.74 E-value=1.7 Score=22.70 Aligned_cols=34 Identities=15% Similarity=0.091 Sum_probs=19.9
Q ss_pred eeeCCceeeeEEEEecCCCceEEEeCCC--CcEEEE
Q 018858 10 RLRGHKATATCCIASRDRPGFVASSGED--GCICWF 43 (349)
Q Consensus 10 ~l~~h~~~i~~~~~~~~~~~~l~t~~~d--g~i~vw 43 (349)
++......-.+..|+|++..+++++..+ |.-.||
T Consensus 3 ~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 3 QLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp EES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CcccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 4444556677889999943444555555 666555
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=88.49 E-value=15 Score=31.63 Aligned_cols=131 Identities=13% Similarity=0.076 Sum_probs=66.8
Q ss_pred eeEEEEecCCCceEEEeCCCCcE-EEEECCCCcE--EEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCccc
Q 018858 18 ATCCIASRDRPGFVASSGEDGCI-CWFDLRSKDV--QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWR 94 (349)
Q Consensus 18 i~~~~~~~~~~~~l~t~~~dg~i-~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 94 (349)
...+..+++ +.+++.+.. |.+ +-|| .++. ...-......+..+.+.+++..++++ ..|.+.. ....++...
T Consensus 241 f~~v~~~~d-G~~~~vg~~-G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~ 314 (398)
T PLN00033 241 FSTVNRSPD-GDYVAVSSR-GNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEE 314 (398)
T ss_pred eeeEEEcCC-CCEEEEECC-ccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCccc
Confidence 334455565 666666554 433 3343 2322 11112234568899999888866655 5665433 333332111
Q ss_pred --ceeeccC--cccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceec--cccccceeEEEEcc
Q 018858 95 --PLESYNY--NKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR--AGHSSICSSVQFIP 156 (349)
Q Consensus 95 --~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~~~ 156 (349)
.+..... ....+..+.+.+++..+++| ..|.+..-. ..++.-...+ ..-....+.+.|.+
T Consensus 315 ~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~ 380 (398)
T PLN00033 315 DFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFD 380 (398)
T ss_pred ccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcC
Confidence 2222211 12347888898877766555 557665543 3443322222 02234677888866
|
|
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.45 E-value=21 Score=35.07 Aligned_cols=107 Identities=18% Similarity=0.258 Sum_probs=54.3
Q ss_pred eeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCC-CCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccc
Q 018858 17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGN-GPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRP 95 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 95 (349)
....++|+|. ..+++.+...|.|+++-...-+.....+... ..+..+.+-...........+..+.+|...... .
T Consensus 37 ~~~~~afD~~-q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~---~ 112 (993)
T KOG1983|consen 37 TPSALAFDPT-QGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKT---G 112 (993)
T ss_pred CCcceeeccc-cceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccc---e
Confidence 4556789998 7899999999999999654322211111000 012222222112223333345556666554211 0
Q ss_pred eeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcC
Q 018858 96 LESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIR 133 (349)
Q Consensus 96 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 133 (349)
.+ ....+++....+--.+ +.| ..+.+++||..
T Consensus 113 --~~--~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~ 144 (993)
T KOG1983|consen 113 --VF--LKQEITSFVTDPPPDW-LIG-ENGLVKVSDVL 144 (993)
T ss_pred --ee--cCCcceeccCCCCcch-hcc-cCceeeEeeec
Confidence 11 1233444443333334 555 77888888864
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=88.32 E-value=23 Score=33.33 Aligned_cols=71 Identities=8% Similarity=-0.037 Sum_probs=45.4
Q ss_pred CeEEEEEecCCCEEEEEeCC-----CeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCC------CcEE
Q 018858 60 PVTSLCFKSGNEDIIYVSSG-----KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDG------GDVK 128 (349)
Q Consensus 60 ~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~ 128 (349)
.+..+.++|++++|+.+... -.|++.|+.++... ...+. ..-..++|.++++.|+....+ ..|+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l--~~~i~---~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~ 202 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWY--PELLD---NVEPSFVWANDSWTFYYVRKHPVTLLPYQVW 202 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCC--Ccccc---CcceEEEEeeCCCEEEEEEecCCCCCCCEEE
Confidence 36667899999998876432 36888898876421 11121 111458999998766654332 3577
Q ss_pred EEEcCCc
Q 018858 129 IIDIRQH 135 (349)
Q Consensus 129 i~d~~~~ 135 (349)
.+++.++
T Consensus 203 ~h~lgt~ 209 (686)
T PRK10115 203 RHTIGTP 209 (686)
T ss_pred EEECCCC
Confidence 7787766
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=88.05 E-value=12 Score=29.71 Aligned_cols=84 Identities=10% Similarity=0.100 Sum_probs=46.5
Q ss_pred EEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCC---CeEEEEEccC---CCcccce-eeccCcccceEEEEEc
Q 018858 40 ICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG---KEVKSFDVHM---PASWRPL-ESYNYNKEEINQIVCN 112 (349)
Q Consensus 40 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~---~~~~~~~-~~~~~~~~~v~~~~~~ 112 (349)
-.+||+.+++....-...+..+.+-.+.++|+.+.+|+.. ..+++++... ....... ..+. ....--....-
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~-~~RWYpT~~~L 126 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ-SGRWYPTATTL 126 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc-CCCccccceEC
Confidence 4578888776532212233334445677899999988752 3578887543 1111111 1111 11222334455
Q ss_pred cCCCEEEEEcCC
Q 018858 113 PKSSFLACADDG 124 (349)
Q Consensus 113 ~~~~~l~~~~~d 124 (349)
|||+.|+.|+..
T Consensus 127 ~DG~vlIvGG~~ 138 (243)
T PF07250_consen 127 PDGRVLIVGGSN 138 (243)
T ss_pred CCCCEEEEeCcC
Confidence 789999988876
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=87.99 E-value=14 Score=30.74 Aligned_cols=22 Identities=14% Similarity=0.105 Sum_probs=13.7
Q ss_pred CCcEEEEEcCCC----eEEEEEccCc
Q 018858 193 TNKICVVAKGDG----VVDVINIESE 214 (349)
Q Consensus 193 ~~~~l~~~~~dg----~i~i~d~~~~ 214 (349)
++++.+.|+.++ .+..||.++.
T Consensus 171 ~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 171 QNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred CCEEEEEcCCCCccccceEEEecCCC
Confidence 467777777654 2456777654
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=87.91 E-value=16 Score=31.12 Aligned_cols=86 Identities=16% Similarity=0.112 Sum_probs=50.9
Q ss_pred eeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecc--ccccceEEEEeecC-CC
Q 018858 255 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI--NLNKKVNWLCTTPT-ES 331 (349)
Q Consensus 255 ~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~-~~ 331 (349)
++++.+.. .+.+..+... ....+|+.+-+|.-|+-|+.+...... ...+.... .....|-.++.... ++
T Consensus 199 ~lVR~f~~-~sQ~EGCVVD---De~g~LYvgEE~~GIW~y~Aep~~~~~----~~~v~~~~g~~l~aDvEGlaly~~~~g 270 (381)
T PF02333_consen 199 TLVREFKV-GSQPEGCVVD---DETGRLYVGEEDVGIWRYDAEPEGGND----RTLVASADGDGLVADVEGLALYYGSDG 270 (381)
T ss_dssp EEEEEEE--SS-EEEEEEE---TTTTEEEEEETTTEEEEEESSCCC-S------EEEEEBSSSSB-S-EEEEEEEE-CCC
T ss_pred EEEEEecC-CCcceEEEEe---cccCCEEEecCccEEEEEecCCCCCCc----ceeeecccccccccCccceEEEecCCC
Confidence 45556653 3467888888 777899999999888888876432110 02222222 24567888877542 22
Q ss_pred -CcEEEee-CCCeEEEeeC
Q 018858 332 -ENLVVCD-TSKVVKVYSI 348 (349)
Q Consensus 332 -~~l~~~~-~dg~i~iw~~ 348 (349)
.||++.+ .+++..||+.
T Consensus 271 ~gYLivSsQG~~sf~Vy~r 289 (381)
T PF02333_consen 271 KGYLIVSSQGDNSFAVYDR 289 (381)
T ss_dssp -EEEEEEEGGGTEEEEEES
T ss_pred CeEEEEEcCCCCeEEEEec
Confidence 3555554 6788999985
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=87.80 E-value=17 Score=34.64 Aligned_cols=115 Identities=10% Similarity=0.067 Sum_probs=73.7
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc-----EEEEeecCCC----------CeEEEEEecCCCEEEEEeCCC
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKD-----VQLVTDVGNG----------PVTSLCFKSGNEDIIYVSSGK 80 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~-----~~~~~~~~~~----------~v~~~~~~~~~~~l~~~~~dg 80 (349)
.+...++|+|.+...||.....|.-.||++.... .......+.+ .-..+.|.++.+.|++++. .
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~ 224 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-S 224 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-C
Confidence 3567899999878899999999999999992111 1111111112 2236889888888888875 4
Q ss_pred eEEEEEccCCCcccceeeccCcccceEEEEEccC--CCEEEEEcCCCcEEEEEcCC
Q 018858 81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK--SSFLACADDGGDVKIIDIRQ 134 (349)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~ 134 (349)
.+.++|+++......+... .....|..+.-+|. +..|+.. ...|...++..
T Consensus 225 ~l~~~d~~~~~~~~~l~~~-~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~ 277 (765)
T PF10214_consen 225 KLMLIDFESNWQTEYLVTA-KTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKS 277 (765)
T ss_pred ceEEEECCCCCccchhccC-CChhheeeEEecCCccceEEEEe--cCeEEEEEccC
Confidence 5889999876443322221 12356888888876 3333332 24687788775
|
These proteins are found in fungi. |
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=87.73 E-value=14 Score=30.13 Aligned_cols=60 Identities=12% Similarity=0.170 Sum_probs=38.0
Q ss_pred CCcceEEEEEeeecCCccEEEEee------CCCeEEEEecCCCcceecccccceeeecc-----ccccceEEEEeecCCC
Q 018858 263 HTAAASCVAFSMFGERGKYLISGG------NDKLVKVWDCSRFQGVQTSINNDLLIKNI-----NLNKKVNWLCTTPTES 331 (349)
Q Consensus 263 h~~~i~~i~~~~~~~~~~~l~s~~------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~ 331 (349)
-.+.|+.+.|. .+.+.++.|. ....+..||..+.. ...+. .-.++|+.+.+...++
T Consensus 35 i~G~V~~l~~~---~~~~Llv~G~ft~~~~~~~~la~yd~~~~~----------w~~~~~~~s~~ipgpv~a~~~~~~d~ 101 (281)
T PF12768_consen 35 ISGTVTDLQWA---SNNQLLVGGNFTLNGTNSSNLATYDFKNQT----------WSSLGGGSSNSIPGPVTALTFISNDG 101 (281)
T ss_pred ceEEEEEEEEe---cCCEEEEEEeeEECCCCceeEEEEecCCCe----------eeecCCcccccCCCcEEEEEeeccCC
Confidence 45789999997 5666777664 35678899988852 11222 2346777777755455
Q ss_pred CcEE
Q 018858 332 ENLV 335 (349)
Q Consensus 332 ~~l~ 335 (349)
..+.
T Consensus 102 ~~~~ 105 (281)
T PF12768_consen 102 SNFW 105 (281)
T ss_pred ceEE
Confidence 4344
|
|
| >smart00564 PQQ beta-propeller repeat | Back alignment and domain information |
|---|
Probab=87.56 E-value=1.8 Score=21.47 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=21.4
Q ss_pred ceEEEeCCCCcEEEEECCCCcEEEEe
Q 018858 29 GFVASSGEDGCICWFDLRSKDVQLVT 54 (349)
Q Consensus 29 ~~l~t~~~dg~i~vwd~~~~~~~~~~ 54 (349)
..++.++.+|.+..+|.++++.+..+
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 36778888999999999999887653
|
Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases. |
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=86.73 E-value=16 Score=29.91 Aligned_cols=79 Identities=8% Similarity=0.037 Sum_probs=37.7
Q ss_pred eEEEEEeeecCCccEEEEeeCCCeEEEEecCCC-----cceecccccceeeeccccc-cceEEEEeecCCCCcEEEeeCC
Q 018858 267 ASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF-----QGVQTSINNDLLIKNINLN-KKVNWLCTTPTESENLVVCDTS 340 (349)
Q Consensus 267 i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-----~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~d 340 (349)
+..++.+|..+++++|+-....+ -++|.+++. ...........+..+ +.. .....+++.+ +|.+.++--..
T Consensus 130 ~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~~s~g~~~D~-~G~ly~~~~~~ 206 (287)
T PF03022_consen 130 IFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGSQSDGMAIDP-NGNLYFTDVEQ 206 (287)
T ss_dssp EEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE---SECEEEEET-TTEEEEEECCC
T ss_pred ccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceec-cccCCCCceEEECC-CCcEEEecCCC
Confidence 78888875555777777555322 234444321 110000000111111 221 3445566766 77666666788
Q ss_pred CeEEEeeC
Q 018858 341 KVVKVYSI 348 (349)
Q Consensus 341 g~i~iw~~ 348 (349)
+.|..|+.
T Consensus 207 ~aI~~w~~ 214 (287)
T PF03022_consen 207 NAIGCWDP 214 (287)
T ss_dssp TEEEEEET
T ss_pred CeEEEEeC
Confidence 88999874
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=86.07 E-value=19 Score=30.19 Aligned_cols=53 Identities=11% Similarity=0.189 Sum_probs=33.9
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceee----ccCcccceEEEEEccC
Q 018858 60 PVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLES----YNYNKEEINQIVCNPK 114 (349)
Q Consensus 60 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~v~~~~~~~~ 114 (349)
..+.|+|.|+|+.++ +...|.|++++ ..+.....+.. ..........++++|+
T Consensus 3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp SEEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred CceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence 357899999987655 56699999999 33322122222 2233467889999994
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=86.01 E-value=10 Score=28.29 Aligned_cols=31 Identities=13% Similarity=0.264 Sum_probs=25.0
Q ss_pred cceEEEEEccCC------CEEEEEcCCCcEEEEEcCC
Q 018858 104 EEINQIVCNPKS------SFLACADDGGDVKIIDIRQ 134 (349)
Q Consensus 104 ~~v~~~~~~~~~------~~l~~~~~dg~i~i~d~~~ 134 (349)
..+..++|+|.| ..|++.+.++.|.+|....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378899999954 4788889999999998553
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PRK05560 DNA gyrase subunit A; Validated | Back alignment and domain information |
|---|
Probab=85.94 E-value=34 Score=32.87 Aligned_cols=105 Identities=16% Similarity=0.184 Sum_probs=58.3
Q ss_pred CceEEEeCCCCcEEEEECCCCcE---------EEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcc---CCC---c
Q 018858 28 PGFVASSGEDGCICWFDLRSKDV---------QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVH---MPA---S 92 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~~---~ 92 (349)
...++.-+.+|.|+--++.+... ...++. ...+..+......+.|+..+..|.+...... ... .
T Consensus 498 E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe-~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~~~~~~ 576 (805)
T PRK05560 498 EDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKE-DDFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEASRTAR 576 (805)
T ss_pred CCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCC-CCeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCCCcCCC
Confidence 56788888899888776543211 111121 2334444444566667777778876665443 211 0
Q ss_pred ccce---eeccCcccceEEEEEcc--CCCEEEEEcCCCcEEEEEcC
Q 018858 93 WRPL---ESYNYNKEEINQIVCNP--KSSFLACADDGGDVKIIDIR 133 (349)
Q Consensus 93 ~~~~---~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~ 133 (349)
...+ -.+...+.-+..+.+.. +...++..+.+|.++--++.
T Consensus 577 G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~ 622 (805)
T PRK05560 577 GRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLS 622 (805)
T ss_pred CeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhH
Confidence 1111 11222233345555552 56788888999998887764
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=85.48 E-value=13 Score=27.68 Aligned_cols=38 Identities=11% Similarity=0.081 Sum_probs=30.9
Q ss_pred CceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC
Q 018858 176 PAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 213 (349)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 213 (349)
...+..++++|...-...+.+|++.+.+|.|.+|....
T Consensus 85 ~~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 85 SSQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 34788999999776555577889999999999998774
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.29 E-value=38 Score=32.86 Aligned_cols=112 Identities=14% Similarity=0.099 Sum_probs=60.6
Q ss_pred cEEEEECCCCcEEEEeecCC----CCeEEEEEecCCC--EEEEEeC-----------CCeEEEEEccC-CCcccceeecc
Q 018858 39 CICWFDLRSKDVQLVTDVGN----GPVTSLCFKSGNE--DIIYVSS-----------GKEVKSFDVHM-PASWRPLESYN 100 (349)
Q Consensus 39 ~i~vwd~~~~~~~~~~~~~~----~~v~~~~~~~~~~--~l~~~~~-----------dg~i~iwd~~~-~~~~~~~~~~~ 100 (349)
.|++.|..+++.+..+.... ..+..+.|+.... +++++.. +|.++.|++-. ++..+.+....
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 47888877777665554322 3455666655333 3344332 34567776543 32222222221
Q ss_pred CcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceecccc-ccceeEEEE
Q 018858 101 YNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGH-SSICSSVQF 154 (349)
Q Consensus 101 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~ 154 (349)
-...+ .+..|-..++++|-. ..+++||+...++++..+..+ ...|..+++
T Consensus 934 -~~~~v--~Ai~~f~~~~LagvG-~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt 984 (1205)
T KOG1898|consen 934 -IPGPV--GAICPFQGRVLAGVG-RFLRLYDLGKKKLLRKCELKFIPNRISSIQT 984 (1205)
T ss_pred -CCccc--eEEeccCCEEEEecc-cEEEEeeCChHHHHhhhhhccCceEEEEEee
Confidence 12233 456676666666544 589999998877766554122 445566655
|
|
| >PF01011 PQQ: PQQ enzyme repeat family | Back alignment and domain information |
|---|
Probab=85.09 E-value=3.9 Score=21.29 Aligned_cols=27 Identities=19% Similarity=0.156 Sum_probs=22.7
Q ss_pred eEEEeCCCCcEEEEECCCCcEEEEeec
Q 018858 30 FVASSGEDGCICWFDLRSKDVQLVTDV 56 (349)
Q Consensus 30 ~l~t~~~dg~i~vwd~~~~~~~~~~~~ 56 (349)
.++.++.+|.|+-.|.++|+.+..++.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 355668899999999999999888764
|
; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A .... |
| >COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=85.06 E-value=28 Score=33.11 Aligned_cols=97 Identities=10% Similarity=0.181 Sum_probs=48.5
Q ss_pred CCCCcEEEEECCCCcEEEEeecCCCCeEEEEE-ecCCC-------EEEEEeCCCeEEEEEccCCCcccceeec------c
Q 018858 35 GEDGCICWFDLRSKDVQLVTDVGNGPVTSLCF-KSGNE-------DIIYVSSGKEVKSFDVHMPASWRPLESY------N 100 (349)
Q Consensus 35 ~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~-~~~~~-------~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~ 100 (349)
..|..+.+|++.++...+.+..-...|..+.. -|..+ .++.......+.++-+...+....+..+ .
T Consensus 99 T~dnkLiLWnynn~neyq~idd~shtIlkVkLvrPkantFvs~i~hlL~vAT~~e~~ilgvs~d~~T~Els~fnTgl~vs 178 (1263)
T COG5308 99 TNDNKLILWNYNNSNEYQEIDDFSHTILKVKLVRPKANTFVSRISHLLFVATEKEVMILGVSKDTKTGELSLFNTGLVVS 178 (1263)
T ss_pred EcCCEEEEEecCCCcchhhhhhhhhheeEEEEeccCCcccHHhhhhhhhhhhhheeeEEEEEeccccceeEEEecceEEe
Confidence 34778999999877655444443334444433 22221 1112222333444433211111111111 1
Q ss_pred CcccceEEEEEccCCCEEEEEcCCCcEEEEEcC
Q 018858 101 YNKEEINQIVCNPKSSFLACADDGGDVKIIDIR 133 (349)
Q Consensus 101 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 133 (349)
...-.|.|+.-+.+|+.|++|..| +.+|.+.
T Consensus 179 vqGinV~civs~e~GrIFf~g~~d--~nvyEl~ 209 (1263)
T COG5308 179 VQGINVRCIVSEEDGRIFFGGEND--PNVYELV 209 (1263)
T ss_pred ccCceeEEEEeccCCcEEEecCCC--CCeEEEE
Confidence 112457888888889888888776 6667653
|
|
| >PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST) | Back alignment and domain information |
|---|
Probab=84.92 E-value=21 Score=29.50 Aligned_cols=39 Identities=13% Similarity=0.056 Sum_probs=33.3
Q ss_pred eeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecC
Q 018858 18 ATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVG 57 (349)
Q Consensus 18 i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~ 57 (349)
|+++...++ |++|+++-.-..|.+.|-.+++.+..+.+.
T Consensus 146 iNsV~~~~~-G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~ 184 (299)
T PF14269_consen 146 INSVDKDDD-GDYLISSRNTSTIYKIDPSTGKIIWRLGGK 184 (299)
T ss_pred eeeeeecCC-ccEEEEecccCEEEEEECCCCcEEEEeCCC
Confidence 667777777 799999998899999999999999888765
|
|
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=84.79 E-value=35 Score=32.03 Aligned_cols=31 Identities=16% Similarity=0.257 Sum_probs=24.7
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCeEEEEEc
Q 018858 57 GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDV 87 (349)
Q Consensus 57 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 87 (349)
-...|...+||.|.+.++....+..|.+++-
T Consensus 111 v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k 141 (1243)
T COG5290 111 VSNGIVAASWSADEKTWCVVTSTREILLFDK 141 (1243)
T ss_pred ccCceEEEeeccCCceEEEEEcCceEEEEec
Confidence 3467888899999998888887888888763
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=84.33 E-value=12 Score=26.31 Aligned_cols=113 Identities=12% Similarity=0.116 Sum_probs=65.7
Q ss_pred EEecCCCceEEEeCCCCcEEEEECCCCc--------EEEEeecCCCCeEEEEEec-----CCCEEEEEeCCCeEEEEEcc
Q 018858 22 IASRDRPGFVASSGEDGCICWFDLRSKD--------VQLVTDVGNGPVTSLCFKS-----GNEDIIYVSSGKEVKSFDVH 88 (349)
Q Consensus 22 ~~~~~~~~~l~t~~~dg~i~vwd~~~~~--------~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~iwd~~ 88 (349)
.|... ..-|+.++.-|.|.|++..... .+..+. -...|++++-.+ ..+.|+.|+ ...+..||++
T Consensus 5 kfDG~-~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~ 81 (136)
T PF14781_consen 5 KFDGV-HPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE 81 (136)
T ss_pred EeCCC-ceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence 45444 3457777777889998865332 233343 456777776543 345566666 5669999999
Q ss_pred CCCcccceeeccCcccceEEEEEcc---CCCEEEEEcCCCcEEEEEcCCceEecee
Q 018858 89 MPASWRPLESYNYNKEEINQIVCNP---KSSFLACADDGGDVKIIDIRQHCLYKSL 141 (349)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 141 (349)
.+..... +.. .+.+.++.+-. ...-++..+.+..|.-||.+..+...+.
T Consensus 82 ~N~d~Fy-ke~---~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 82 NNSDLFY-KEV---PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred cCchhhh-hhC---ccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 7643221 112 36677776632 2233444444567888887665555443
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=84.21 E-value=24 Score=29.75 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=13.8
Q ss_pred CCCEEEEEeCC-----------CeEEEEEccCC
Q 018858 69 GNEDIIYVSSG-----------KEVKSFDVHMP 90 (349)
Q Consensus 69 ~~~~l~~~~~d-----------g~i~iwd~~~~ 90 (349)
+++..+.|+.+ ..+..||..+.
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~ 95 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKN 95 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCC
Confidence 56666777653 24677887754
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=83.87 E-value=29 Score=30.34 Aligned_cols=29 Identities=14% Similarity=0.376 Sum_probs=21.0
Q ss_pred eEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC
Q 018858 179 VHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 213 (349)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 213 (349)
+..+.+.+ ..+.+++.+.+|.|.+|++..
T Consensus 192 I~~v~~d~------~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 192 IVQVAVDP------SRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp EEEEEEET------TTTEEEEEESSE-EEEEEE-S
T ss_pred eeeEEecC------CcCEEEEEeCCCcEEEEEEeC
Confidence 45555544 568999999999999999974
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=83.73 E-value=13 Score=34.23 Aligned_cols=68 Identities=13% Similarity=0.200 Sum_probs=46.3
Q ss_pred CceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcE--EEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEc
Q 018858 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV--QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDV 87 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 87 (349)
....++++.-+|. +.-++.+..||.|++|+....+. +++.. .|-..+.|...| |+++..|..+.-|.-
T Consensus 13 ~~e~~~aiqshp~-~~s~v~~~~d~si~lfn~~~r~qski~~~~---~p~~nlv~tnhg--l~~~tsdrr~la~~~ 82 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPG-GQSFVLAHQDGSIILFNFIPRRQSKICEEA---KPKENLVFTNHG--LVTATSDRRALAWKE 82 (1636)
T ss_pred ccceeeeeeecCC-CceEEEEecCCcEEEEeecccchhhhhhhc---CCccceeeeccc--eEEEeccchhheeec
Confidence 3456788888897 88999999999999999875543 33322 333445565433 666666777777753
|
|
| >PF01011 PQQ: PQQ enzyme repeat family | Back alignment and domain information |
|---|
Probab=82.97 E-value=3.9 Score=21.29 Aligned_cols=26 Identities=8% Similarity=0.081 Sum_probs=22.4
Q ss_pred EEEEEcCCCcEEEEEcCCceEeceec
Q 018858 117 FLACADDGGDVKIIDIRQHCLYKSLR 142 (349)
Q Consensus 117 ~l~~~~~dg~i~i~d~~~~~~~~~~~ 142 (349)
.+..++.+|.|+-+|.++|+.+..++
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~ 27 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQ 27 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeee
Confidence 35566899999999999999988877
|
; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A .... |
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=82.15 E-value=11 Score=24.36 Aligned_cols=40 Identities=18% Similarity=0.187 Sum_probs=26.8
Q ss_pred CCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEE
Q 018858 78 SGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACA 121 (349)
Q Consensus 78 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 121 (349)
.+|.+..||..+++....+..+ ...+.+++++++.+++.+
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~L----~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDGL----YFPNGVALSPDESFVLVA 74 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEEE----SSEEEEEE-TTSSEEEEE
T ss_pred CCcCEEEEECCCCeEEEehhCC----CccCeEEEcCCCCEEEEE
Confidence 4588999999886543444444 457889999999877655
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.11 E-value=21 Score=27.43 Aligned_cols=103 Identities=13% Similarity=0.091 Sum_probs=56.2
Q ss_pred CCceEEEeCCC--CcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEE-eCCCeEEEEEccCCCcccceeeccCcc
Q 018858 27 RPGFVASSGED--GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYV-SSGKEVKSFDVHMPASWRPLESYNYNK 103 (349)
Q Consensus 27 ~~~~l~t~~~d--g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~ 103 (349)
++.++.+.+.- ..|++||+.+++.+.+-+-....+..=-...-++++..- =.+|.-.++|.++- +.+..+.. +
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~---~~lg~~~y-~ 130 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTL---EELGRFSY-E 130 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHh---hhhccccc-C
Confidence 35667666653 469999999998876544322122221122224444333 34777788887763 33333321 2
Q ss_pred cceEEEEEccCCCEEEEEcCCCcEEEEEcCCc
Q 018858 104 EEINQIVCNPKSSFLACADDGGDVKIIDIRQH 135 (349)
Q Consensus 104 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 135 (349)
+.-+.++ .+++.|..+.....++.-|.++-
T Consensus 131 GeGWgLt--~d~~~LimsdGsatL~frdP~tf 160 (262)
T COG3823 131 GEGWGLT--SDDKNLIMSDGSATLQFRDPKTF 160 (262)
T ss_pred Ccceeee--cCCcceEeeCCceEEEecCHHHh
Confidence 3344444 35555666665566777676543
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=81.69 E-value=38 Score=30.16 Aligned_cols=105 Identities=15% Similarity=0.156 Sum_probs=50.9
Q ss_pred CceEEEeCCC-----CcEEEEECCCCcEEEEeec----CCCCeEEEEEecCCCEEEEEeCC-----CeEEEEEccCCCcc
Q 018858 28 PGFVASSGED-----GCICWFDLRSKDVQLVTDV----GNGPVTSLCFKSGNEDIIYVSSG-----KEVKSFDVHMPASW 93 (349)
Q Consensus 28 ~~~l~t~~~d-----g~i~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~ 93 (349)
+.+.+.|+.+ ..+..||+.+.+....-.. ....-.+++. -+++..+.|+.+ ..+..||+.+.+ .
T Consensus 229 ~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~-W 306 (470)
T PLN02193 229 STLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKK-W 306 (470)
T ss_pred CEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCE-E
Confidence 5666677654 3577888876553221111 1111122222 245566666654 346778877542 2
Q ss_pred cceee---ccCcccceEEEEEccCCCEEEEEcCC----CcEEEEEcCCce
Q 018858 94 RPLES---YNYNKEEINQIVCNPKSSFLACADDG----GDVKIIDIRQHC 136 (349)
Q Consensus 94 ~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~ 136 (349)
..+.. ............+ +++.++.++.+ ..+.+||+.+.+
T Consensus 307 ~~~~~~~~~~~~R~~~~~~~~--~gkiyviGG~~g~~~~dv~~yD~~t~~ 354 (470)
T PLN02193 307 FHCSTPGDSFSIRGGAGLEVV--QGKVWVVYGFNGCEVDDVHYYDPVQDK 354 (470)
T ss_pred EeCCCCCCCCCCCCCcEEEEE--CCcEEEEECCCCCccCceEEEECCCCE
Confidence 21111 0001111112222 46667777654 358888887654
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=81.63 E-value=26 Score=28.23 Aligned_cols=155 Identities=6% Similarity=-0.100 Sum_probs=92.5
Q ss_pred cceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEee
Q 018858 104 EEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIA 183 (349)
Q Consensus 104 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (349)
.....++-.|||..-+++...+.|--.|-++++....-- +.......+...|
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypL-g~Ga~Phgiv~gp--------------------------- 113 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPL-GSGASPHGIVVGP--------------------------- 113 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEEEec-CCCCCCceEEECC---------------------------
Confidence 345667778899888888888888888998988755444 5666677788877
Q ss_pred cCcccccCCCCcEEEEEcCCCeEEEEEccCceeeee--cCCCCCCccceeeeeccccEEEEee-eeeecCceeeeeeeee
Q 018858 184 IPDADMLDKTNKICVVAKGDGVVDVINIESELNISR--SKSTTKPLKGSQSTSKVNIRDAEME-ILDQSGGKRLHLDYSV 260 (349)
Q Consensus 184 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 260 (349)
++..-++-+.. -|.-+|-++.+.... .............|.++|....+.. ..-+.....-..+..+
T Consensus 114 ---------dg~~Witd~~~-aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vf 183 (353)
T COG4257 114 ---------DGSAWITDTGL-AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVF 183 (353)
T ss_pred ---------CCCeeEecCcc-eeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeee
Confidence 55555443333 455555554433221 1223345567788999998877511 0011111111223333
Q ss_pred cCC-CcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCC
Q 018858 261 GGH-TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 261 ~~h-~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 299 (349)
... ....+.|+.. |+|..-++.-.+..|-..|...+
T Consensus 184 paPqG~gpyGi~at---pdGsvwyaslagnaiaridp~~~ 220 (353)
T COG4257 184 PAPQGGGPYGICAT---PDGSVWYASLAGNAIARIDPFAG 220 (353)
T ss_pred ccCCCCCCcceEEC---CCCcEEEEeccccceEEcccccC
Confidence 322 2345677777 78887777666666766676654
|
|
| >PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST) | Back alignment and domain information |
|---|
Probab=81.42 E-value=29 Score=28.65 Aligned_cols=40 Identities=18% Similarity=0.240 Sum_probs=33.7
Q ss_pred ceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceecccc
Q 018858 105 EINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGH 145 (349)
Q Consensus 105 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 145 (349)
.+.++...++|.+|++.-.-..|.+.|-++++++..+. +.
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lg-G~ 184 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLG-GK 184 (299)
T ss_pred EeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeC-CC
Confidence 36677778889999998888889999999999998887 44
|
|
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=81.38 E-value=4.1 Score=36.91 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=28.4
Q ss_pred eeeEEEEec---CCCceEEEeCCCCcEEEEECCCCcEEEEee
Q 018858 17 TATCCIASR---DRPGFVASSGEDGCICWFDLRSKDVQLVTD 55 (349)
Q Consensus 17 ~i~~~~~~~---~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~ 55 (349)
.+..+++++ ++..+|++.+.|+++++||+.+++++.+..
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEec
Confidence 344455554 126899999999999999999999876654
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=80.90 E-value=50 Score=31.08 Aligned_cols=92 Identities=17% Similarity=0.117 Sum_probs=51.2
Q ss_pred EEEEecCCCEEEEEeCCC-----eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceE
Q 018858 63 SLCFKSGNEDIIYVSSGK-----EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL 137 (349)
Q Consensus 63 ~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 137 (349)
.+.|-|+|..+++-+.|| .|..+....- .......-.+....+..++|+-....++.+ ....+++|-..+-.-
T Consensus 251 ~LSWkpqgS~~ati~td~~~~S~~ViFfErNGL-rHGef~lr~~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNyhW 328 (1243)
T COG5290 251 QLSWKPQGSKYATIGTDGCSTSESVIFFERNGL-RHGEFDLRVGCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNYHW 328 (1243)
T ss_pred ccccccCCceeeeeccCCCCCcceEEEEccCCc-ccCCccccCCchhhhhhhhhhHHHHHHHHh-hcceEEEEEccceEE
Confidence 478999999999987554 4555543311 111111111223456667776655545443 345799998765432
Q ss_pred eceeccccccceeEEEEccC
Q 018858 138 YKSLRAGHSSICSSVQFIPW 157 (349)
Q Consensus 138 ~~~~~~~~~~~v~~~~~~~~ 157 (349)
.-... ..-..+.-+.|+|.
T Consensus 329 YLK~e-~~ip~~s~vkwhpe 347 (1243)
T COG5290 329 YLKVE-RQIPGISYVKWHPE 347 (1243)
T ss_pred EEEEe-ecCCCcceeeeccc
Confidence 22222 22345667889984
|
|
| >PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length | Back alignment and domain information |
|---|
Probab=80.68 E-value=4.8 Score=19.21 Aligned_cols=26 Identities=8% Similarity=0.291 Sum_probs=20.0
Q ss_pred cceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 319 KKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 319 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
..|.+++..+ .+++.+.+-+.+|+|.
T Consensus 2 E~i~aia~g~---~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGD---SWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccC---CEEEEEeCCCeEEecC
Confidence 3577777744 3899999999999984
|
The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important. |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=80.44 E-value=40 Score=29.69 Aligned_cols=56 Identities=9% Similarity=0.052 Sum_probs=37.8
Q ss_pred CceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcE--EEEee-----cCCCCeEEEEEecCC
Q 018858 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV--QLVTD-----VGNGPVTSLCFKSGN 70 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~--~~~~~-----~~~~~v~~~~~~~~~ 70 (349)
.-..-+.|+|.|+ +++|++--..|.|++++..++.. +..+. ........|+++|+-
T Consensus 28 GL~~Pw~maflPD-G~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 28 GLNKPWALLWGPD-NQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCCceEEEEcCC-CeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 3445678999998 77777765569999998655432 21111 135678999999874
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=80.04 E-value=14 Score=23.98 Aligned_cols=51 Identities=12% Similarity=0.135 Sum_probs=28.1
Q ss_pred eeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEee--CCCeEEEe
Q 018858 285 GGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD--TSKVVKVY 346 (349)
Q Consensus 285 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~iw 346 (349)
+..+|.+.-||..+++ ...+..--.-.+.++.++ |+++|+.+- .-...+.|
T Consensus 33 ~~~~GRll~ydp~t~~----------~~vl~~~L~fpNGVals~-d~~~vlv~Et~~~Ri~ryw 85 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKE----------TTVLLDGLYFPNGVALSP-DESFVLVAETGRYRILRYW 85 (89)
T ss_dssp T---EEEEEEETTTTE----------EEEEEEEESSEEEEEE-T-TSSEEEEEEGGGTEEEEEE
T ss_pred CCCCcCEEEEECCCCe----------EEEehhCCCccCeEEEcC-CCCEEEEEeccCceEEEEE
Confidence 4456888888888863 222222233568889987 777776662 33344444
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=80.01 E-value=32 Score=28.22 Aligned_cols=58 Identities=21% Similarity=0.371 Sum_probs=37.9
Q ss_pred cEEEEECCCCcEEEEeecC------CCCeEEEEEecCCC----EEEEE--eCCCeEEEEEccCCCcccce
Q 018858 39 CICWFDLRSKDVQLVTDVG------NGPVTSLCFKSGNE----DIIYV--SSGKEVKSFDVHMPASWRPL 96 (349)
Q Consensus 39 ~i~vwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~----~l~~~--~~dg~i~iwd~~~~~~~~~~ 96 (349)
.|.+||+.+.+.++++... .+.+..+.+..... .+|.. +..+.|.|+|+.+++..+.+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~ 104 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVL 104 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEE
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEe
Confidence 7899999999988776542 35667777765221 33332 23458999999987654443
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 349 | ||||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 5e-04 |
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 349 | |||
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 100.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.98 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.98 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.97 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.97 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.97 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.96 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.96 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.96 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.96 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.95 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.94 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.94 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.94 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.94 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.94 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.94 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.93 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.93 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.93 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.93 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.93 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.92 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.92 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.92 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.92 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.92 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.92 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.91 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.91 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.91 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.9 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.9 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.89 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.89 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.88 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.87 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.86 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.86 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.85 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.85 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.84 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.84 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.84 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.84 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.84 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.83 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.81 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.81 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.81 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.8 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.8 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.79 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.79 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.79 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.78 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.78 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.76 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.75 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.75 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.75 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.74 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.74 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.74 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.73 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.71 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.7 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.69 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.69 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.69 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.68 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.68 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.67 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.66 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.65 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.61 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.61 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.61 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.6 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.6 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.6 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.6 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.59 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.59 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.58 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.57 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.55 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.55 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.55 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.53 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.49 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.49 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.47 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.47 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.46 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.42 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.39 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.36 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.32 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.32 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.28 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.27 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.24 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.22 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.21 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.2 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.2 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.19 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.19 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.19 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.19 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.18 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.17 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.16 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.15 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 99.13 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.1 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.08 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.08 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 99.05 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 99.04 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.01 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.0 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.99 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.97 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.94 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.94 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.93 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.92 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.89 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.87 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.87 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.86 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.84 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.83 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.81 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.81 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.77 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.76 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.73 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.72 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.69 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.68 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.68 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.67 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.64 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.57 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.54 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.53 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.52 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.52 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.5 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.5 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.49 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.48 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.46 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.45 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.45 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.44 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.44 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.41 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.4 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.38 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.34 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.32 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.32 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.22 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 98.21 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 98.19 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.18 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 98.13 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.09 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.07 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 98.02 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.01 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.93 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.91 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.86 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 97.84 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.82 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.81 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.78 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.75 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.71 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.68 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.65 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 97.63 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.6 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.58 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.57 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.56 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.53 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.52 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.48 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.48 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.38 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 97.24 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.22 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.21 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 97.19 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 97.14 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.99 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 96.98 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 96.93 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 96.81 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 96.79 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 96.77 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.74 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 96.59 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 96.58 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 96.38 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.33 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.21 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 96.16 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 96.01 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 95.79 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 95.7 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 95.28 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 95.25 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 95.22 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 94.58 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 94.11 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 93.98 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 93.94 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 93.42 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 93.14 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 91.92 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 90.51 | |
| 1suu_A | 312 | DNA gyrase subunit A; topoisomerase,DNA gyrase, be | 90.2 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 89.63 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 89.35 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 87.1 | |
| 3no0_A | 276 | DNA gyrase subunit A; DNA topology, topoisomerase, | 86.72 | |
| 3uc1_A | 327 | DNA gyrase subunit A; DNA binding protein, topoiso | 86.32 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 86.17 | |
| 3l6v_A | 370 | GYRA, DNA gyrase subunit A; gyrase A C-terminal do | 86.09 | |
| 3uc1_A | 327 | DNA gyrase subunit A; DNA binding protein, topoiso | 85.99 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 85.12 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 82.91 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 80.8 |
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-49 Score=335.42 Aligned_cols=287 Identities=16% Similarity=0.176 Sum_probs=251.7
Q ss_pred CCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEE
Q 018858 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFD 86 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 86 (349)
....+.+|.++|++++|+|+ +.+|++|+.||+|++||+.+++....+.+|...|.+++|+|++++|++|+.|+.|++||
T Consensus 100 ~~~~l~gh~~~V~~~~~~p~-~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 100 EKYALSGHRSPVTRVIFHPV-FSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD 178 (410)
T ss_dssp CSCEEECCSSCEEEEEECSS-SSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEE
T ss_pred ceEeecccCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Confidence 36678999999999999998 89999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCC
Q 018858 87 VHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPEN 166 (349)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 166 (349)
+.++ ..+..+.+|...|.+++|+|++++|++|+.|+.|++||+++++++..+. +|...+.++.|+|
T Consensus 179 ~~~~---~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~~~---------- 244 (410)
T 1vyh_C 179 FQGF---ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT-GHREWVRMVRPNQ---------- 244 (410)
T ss_dssp TTSS---CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECT----------
T ss_pred CCCC---ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe-CCCccEEEEEECC----------
Confidence 9865 4456677788999999999999999999999999999999999999999 9999999999999
Q ss_pred CCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeecc----------
Q 018858 167 NGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKV---------- 236 (349)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 236 (349)
++.+|++|+.|+.|++||++++.....+.. ....+.+++|+|+
T Consensus 245 --------------------------~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~ 297 (410)
T 1vyh_C 245 --------------------------DGTLIASCSNDQTVRVWVVATKECKAELRE-HRHVVECISWAPESSYSSISEAT 297 (410)
T ss_dssp --------------------------TSSEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECCSCGGGGGGGCC
T ss_pred --------------------------CCCEEEEEcCCCeEEEEECCCCceeeEecC-CCceEEEEEEcCcccccchhhhc
Confidence 899999999999999999998776655433 4567888999986
Q ss_pred ----------ccEEEEeeeeeecC----ceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcce
Q 018858 237 ----------NIRDAEMEILDQSG----GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGV 302 (349)
Q Consensus 237 ----------~~~~~~~~~~~~~~----~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 302 (349)
+.++++ ++.|+.+ .....++..+.+|...|+++.|+ |++++|++|+.|+.|++||+.++
T Consensus 298 ~~~~~~~~~~g~~l~s-gs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~---~~g~~l~s~s~D~~i~vwd~~~~--- 370 (410)
T 1vyh_C 298 GSETKKSGKPGPFLLS-GSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH---SGGKFILSCADDKTLRVWDYKNK--- 370 (410)
T ss_dssp SCC-------CCEEEE-EETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC---SSSSCEEEEETTTEEEEECCTTS---
T ss_pred cccccccCCCCCEEEE-EeCCCeEEEEECCCCceEEEEECCCCcEEEEEEc---CCCCEEEEEeCCCeEEEEECCCC---
Confidence 456663 4433322 22345667888999999999999 89999999999999999999887
Q ss_pred ecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 303 QTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
..+..+.+|...|++++|+| ++.+|++++.||.|++|+++
T Consensus 371 ------~~~~~~~~h~~~v~~l~~~~-~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 371 ------RCMKTLNAHEHFVTSLDFHK-TAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp ------CCCEEEECCSSCEEEEEECS-SSSCEEEEETTSEEEEEC--
T ss_pred ------ceEEEEcCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEeCC
Confidence 56667789999999999988 78899999999999999974
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-48 Score=320.52 Aligned_cols=289 Identities=16% Similarity=0.151 Sum_probs=248.0
Q ss_pred CCCeeeeCCceeeeEEEEecC---CCceEEEeCCCCcEEEEECCCCcE--EEEeecCCCCeEEEEEecCCCEEEEEeCCC
Q 018858 6 AKPRRLRGHKATATCCIASRD---RPGFVASSGEDGCICWFDLRSKDV--QLVTDVGNGPVTSLCFKSGNEDIIYVSSGK 80 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~---~~~~l~t~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 80 (349)
...+.+++|.+.|++++|+|+ ++.+|++|+.|++|++|++..++. ...+.+|...|.+++|++++.++++++.|+
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~ 102 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA 102 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred heeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCC
Confidence 345677899999999999874 357899999999999999987654 457889999999999999999999999999
Q ss_pred eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCC
Q 018858 81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPW 160 (349)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 160 (349)
.|++||+++++. +..+..+...+.+++|+|++++|++++.+|.|++||+++++....+. .+...+.+++|+|
T Consensus 103 ~i~lWd~~~~~~---~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~-~~~~~v~~~~~sp---- 174 (321)
T 3ow8_A 103 HIRLWDLENGKQ---IKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD-TRGKFILSIAYSP---- 174 (321)
T ss_dssp EEEEEETTTTEE---EEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEE-CSSSCEEEEEECT----
T ss_pred cEEEEECCCCCE---EEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEec-CCCceEEEEEECC----
Confidence 999999997643 44455566788999999999999999999999999999998888888 7888999999999
Q ss_pred CCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEE
Q 018858 161 EGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRD 240 (349)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (349)
++++|++|+.||.|++||+++++....+.. ....+.+++|+|+++++
T Consensus 175 --------------------------------dg~~lasg~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~spd~~~l 221 (321)
T 3ow8_A 175 --------------------------------DGKYLASGAIDGIINIFDIATGKLLHTLEG-HAMPIRSLTFSPDSQLL 221 (321)
T ss_dssp --------------------------------TSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCCCEEEECTTSCEE
T ss_pred --------------------------------CCCEEEEEcCCCeEEEEECCCCcEEEEEcc-cCCceeEEEEcCCCCEE
Confidence 899999999999999999998877665543 35678999999999999
Q ss_pred EEeeeeeecC----ceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccc
Q 018858 241 AEMEILDQSG----GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNIN 316 (349)
Q Consensus 241 ~~~~~~~~~~----~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 316 (349)
++ +..|+.+ .........+.+|...|.+++|+ |++++|++++.|+.|++||+.++ ..+..+.+
T Consensus 222 ~s-~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~s---p~~~~l~s~s~D~~v~iwd~~~~---------~~~~~~~~ 288 (321)
T 3ow8_A 222 VT-ASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFC---PDDTHFVSSSSDKSVKVWDVGTR---------TCVHTFFD 288 (321)
T ss_dssp EE-ECTTSCEEEEETTTCCEEEEECCCSSCEEEEEEC---TTSSEEEEEETTSCEEEEETTTT---------EEEEEECC
T ss_pred EE-EcCCCeEEEEECCCcceeEEEcCCCCceEEEEEC---CCCCEEEEEeCCCcEEEEeCCCC---------EEEEEEcC
Confidence 85 3333322 22345567788999999999999 89999999999999999999987 66777889
Q ss_pred cccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 317 LNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 317 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
|...|.+++|+| ++++|++++.||.|++||++
T Consensus 289 h~~~v~~v~~s~-~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 289 HQDQVWGVKYNG-NGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp CSSCEEEEEECT-TSSEEEEEETTCCEEEEECC
T ss_pred CCCcEEEEEECC-CCCEEEEEeCCCeEEEEeCC
Confidence 999999999988 88899999999999999975
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-48 Score=315.16 Aligned_cols=290 Identities=15% Similarity=0.134 Sum_probs=245.5
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
.+..++|++|.+.|++++|+|+ +++|++++.||.|++||+++++.+..+..|..+|.+++|+|++++|++|+.|+.|++
T Consensus 3 l~~~~~~~~h~~~V~~~~fsp~-~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~v 81 (304)
T 2ynn_A 3 LDIKKTFSNRSDRVKGIDFHPT-EPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRV 81 (304)
T ss_dssp CCCEEEEEEECSCEEEEEECSS-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred ceeEEeecCCCCceEEEEECCC-CCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEE
Confidence 4678899999999999999998 899999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCc-eEeceeccccccceeEEEEccCCCCCCC
Q 018858 85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQH-CLYKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
||+++++ .+..+.+|...|.+++|+|++++|++|+.|+.|++||++++ .....+. +|...|.+++|+|+
T Consensus 82 wd~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~-~h~~~v~~v~~~p~------ 151 (304)
T 2ynn_A 82 FNYNTGE---KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE-GHEHFVMCVAFNPK------ 151 (304)
T ss_dssp EETTTCC---EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEEC-CCCSCEEEEEECTT------
T ss_pred EECCCCc---EEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhc-ccCCcEEEEEECCC------
Confidence 9999764 44556678899999999999999999999999999999977 5556677 89999999999994
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeec--cccEEE
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSK--VNIRDA 241 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 241 (349)
++.+|++|+.|+.|++||++...............+..+.++| ++.+++
T Consensus 152 -----------------------------~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 202 (304)
T 2ynn_A 152 -----------------------------DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202 (304)
T ss_dssp -----------------------------CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEE
T ss_pred -----------------------------CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEE
Confidence 5789999999999999999876655544444556677778876 677777
Q ss_pred Eeeeeeec----CceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecccc
Q 018858 242 EMEILDQS----GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL 317 (349)
Q Consensus 242 ~~~~~~~~----~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 317 (349)
+ ++.|+. ......++..+.+|...|.++.|+ |++++|++|+.||.|++||+.++ +.+..+..|
T Consensus 203 s-~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~---p~~~~l~s~s~Dg~i~iWd~~~~---------~~~~~~~~~ 269 (304)
T 2ynn_A 203 T-ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH---PTLPIIISGSEDGTLKIWNSSTY---------KVEKTLNVG 269 (304)
T ss_dssp E-EETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC---SSSSEEEEEETTSCEEEEETTTC---------CEEEEECCS
T ss_pred E-EcCCCeEEEEeCCCCccceeeCCCCCCEEEEEEC---CCCCEEEEEcCCCeEEEEECCCC---------ceeeeccCC
Confidence 4 333332 222446677889999999999999 89999999999999999999997 667777889
Q ss_pred ccceEEEEeecCCCCc-EEEeeCCCeEEEeeC
Q 018858 318 NKKVNWLCTTPTESEN-LVVCDTSKVVKVYSI 348 (349)
Q Consensus 318 ~~~v~~~~~~~~~~~~-l~~~~~dg~i~iw~~ 348 (349)
...+.+++++|.+++. +++++. ..+.+|++
T Consensus 270 ~~~~~~~~~~~~~~~~~~asg~~-~g~~~~~~ 300 (304)
T 2ynn_A 270 LERSWCIATHPTGRKNYIASGFD-NGFTVLSL 300 (304)
T ss_dssp SSSEEEEEECTTCGGGCEEEEET-TEEEEEEC
T ss_pred CccEEEEEECCCCCceEEEEecC-CceEEEEe
Confidence 9999999999965554 555555 45667765
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-47 Score=315.77 Aligned_cols=289 Identities=13% Similarity=0.135 Sum_probs=247.3
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
....++|++|.+.|++++|+|+ +++|++|+.||.|++||..+++.+..+..|...|.+++|+|++++|++++.|+.|++
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d-~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~i 123 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTD-SRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTT-SSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred chhheeecCCCCceEEEEECCC-CCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEE
Confidence 3456789999999999999998 899999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCc-ccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCC
Q 018858 85 FDVHMPAS-WRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 85 wd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
|++.+... ......+.+|...+.++.|++++. +++++.|+.|++||+++++.+..+. +|...|.+++|+|
T Consensus 124 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~~~------- 194 (340)
T 1got_B 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFT-GHTGDVMSLSLAP------- 194 (340)
T ss_dssp EETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECT-------
T ss_pred EECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEc-CCCCceEEEEECC-------
Confidence 99986532 234455677889999999998765 8899999999999999999999999 8999999999999
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
++++|++|+.||.|++||++++.....+.. ....+..++|+|+++++++
T Consensus 195 -----------------------------~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~-h~~~v~~v~~~p~~~~l~s- 243 (340)
T 1got_B 195 -----------------------------DTRLFVSGACDASAKLWDVREGMCRQTFTG-HESDINAICFFPNGNAFAT- 243 (340)
T ss_dssp -----------------------------TSSEEEEEETTSCEEEEETTTCSEEEEECC-CSSCEEEEEECTTSSEEEE-
T ss_pred -----------------------------CCCEEEEEeCCCcEEEEECCCCeeEEEEcC-CcCCEEEEEEcCCCCEEEE-
Confidence 789999999999999999998776655543 3567899999999999985
Q ss_pred eeeeecCc----eeeeeeeeec--CCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecccc
Q 018858 244 EILDQSGG----KRLHLDYSVG--GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL 317 (349)
Q Consensus 244 ~~~~~~~~----~~~~~~~~~~--~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 317 (349)
++.|+.+. .....+..+. .+...|.+++|+ |++++|++|+.|+.|++||+.+. ..+..+.+|
T Consensus 244 ~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s---~~g~~l~~g~~d~~i~vwd~~~~---------~~~~~~~~h 311 (340)
T 1got_B 244 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS---KSGRLLLAGYDDFNCNVWDALKA---------DRAGVLAGH 311 (340)
T ss_dssp EETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC---TTSSEEEEEETTSEEEEEETTTC---------CEEEEEECC
T ss_pred EcCCCcEEEEECCCCcEEEEEccCCcccceEEEEEC---CCCCEEEEECCCCeEEEEEcccC---------cEeeEeecC
Confidence 33333221 1112222332 334579999999 89999999999999999999887 566677899
Q ss_pred ccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 318 NKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 318 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
...|.+++|+| ++.+|++++.||.|++||
T Consensus 312 ~~~v~~~~~s~-dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 312 DNRVSCLGVTD-DGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SSCEEEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred CCcEEEEEEcC-CCCEEEEEcCCccEEecC
Confidence 99999999988 888999999999999997
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-47 Score=318.49 Aligned_cols=306 Identities=14% Similarity=0.127 Sum_probs=244.1
Q ss_pred CCccCCCCeeeeCCce-eeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEE---EeecCCCCeEEEEEecCCCEEEEE
Q 018858 1 MTDAEAKPRRLRGHKA-TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQL---VTDVGNGPVTSLCFKSGNEDIIYV 76 (349)
Q Consensus 1 m~~~~~~~~~l~~h~~-~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~ 76 (349)
|.+..+++++|++|.+ .|++++|+|+ +++|++|+.|++|++||+.+++... ...+|...|.+++|+|++++|+++
T Consensus 1 ~~~~~~~~~~~~~h~~~~v~~l~~sp~-g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~ 79 (345)
T 3fm0_A 1 MKDSLVLLGRVPAHPDSRCWFLAWNPA-GTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASA 79 (345)
T ss_dssp ---CEEEEEEECCSTTSCEEEEEECTT-SSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEE
T ss_pred CCccEEEeeeecCCCCCcEEEEEECCC-CCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEE
Confidence 6677788999999998 9999999998 8999999999999999998776432 236799999999999999999999
Q ss_pred eCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCc---eEeceeccccccceeEEE
Q 018858 77 SSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQH---CLYKSLRAGHSSICSSVQ 153 (349)
Q Consensus 77 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~v~~~~ 153 (349)
+.|+.+++|++..+. ...+..+.+|...|.+++|+|++++|++|+.|+.|++||++++ +++..+. .|...|.+++
T Consensus 80 s~D~~v~iw~~~~~~-~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~h~~~v~~~~ 157 (345)
T 3fm0_A 80 SFDATTCIWKKNQDD-FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLN-SHTQDVKHVV 157 (345)
T ss_dssp ETTSCEEEEEECCC--EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEEC-CCCSCEEEEE
T ss_pred ECCCcEEEEEccCCC-eEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEec-CcCCCeEEEE
Confidence 999999999988643 3455677889999999999999999999999999999999865 3456677 8899999999
Q ss_pred EccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeee-ecCCCCCCccceee
Q 018858 154 FIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS-RSKSTTKPLKGSQS 232 (349)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~~ 232 (349)
|+| ++++|++++.|+.|++||.+.+.... .........+..++
T Consensus 158 ~~p------------------------------------~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~ 201 (345)
T 3fm0_A 158 WHP------------------------------------SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLA 201 (345)
T ss_dssp ECS------------------------------------SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEE
T ss_pred ECC------------------------------------CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEE
Confidence 999 78999999999999999998765332 22233457899999
Q ss_pred eeccccEEEEeeeeeecCc-------------------eeeeeeeeecC-CCcceEEEEEeeecCCccEEEEeeCCCeEE
Q 018858 233 TSKVNIRDAEMEILDQSGG-------------------KRLHLDYSVGG-HTAAASCVAFSMFGERGKYLISGGNDKLVK 292 (349)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~-h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~ 292 (349)
|+|+|+++++ ++.|+.+. ....++..+.+ |...|++++|+ |++..|++++.|+.|+
T Consensus 202 ~sp~g~~l~s-~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~---~~~~~l~s~~~d~~i~ 277 (345)
T 3fm0_A 202 FDPSGQRLAS-CSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWC---QLTGALATACGDDAIR 277 (345)
T ss_dssp ECTTSSEEEE-EETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEEC---TTTCCEEEEETTSCEE
T ss_pred ECCCCCEEEE-EeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEe---cCCCEEEEEeCCCeEE
Confidence 9999999985 33332211 11233444554 88899999999 8999999999999999
Q ss_pred EEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 293 VWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 293 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
+|+....................+|...|++++|+|.++.+|++++.||.|++|+++
T Consensus 278 vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~ 334 (345)
T 3fm0_A 278 VFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQ 334 (345)
T ss_dssp EEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEEC
T ss_pred EEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEec
Confidence 999876532111000012233468999999999999555689999999999999964
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-46 Score=307.59 Aligned_cols=290 Identities=19% Similarity=0.237 Sum_probs=248.8
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 85 (349)
....++.+|.+.|++++|+|+ +++|++++.||.|++|+..+++....+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 92 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred eeEEEEcccCCcEEEEEECCC-CCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence 456778899999999999998 8999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCC
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPE 165 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 165 (349)
|+++++ .+..+..|...|.+++|+|++++|++|+.|+.|++||+++++.+..+. .|...+.+++|+|
T Consensus 93 d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~--------- 159 (312)
T 4ery_A 93 DVSSGK---CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHFNR--------- 159 (312)
T ss_dssp ETTTCC---EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECT---------
T ss_pred ECCCCc---EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEec-CCCCcEEEEEEcC---------
Confidence 999764 445566788899999999999999999999999999999999998998 8999999999999
Q ss_pred CCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeee
Q 018858 166 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI 245 (349)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (349)
++++|++++.||.|++||+++++............+..++|+|+++++++.+
T Consensus 160 ---------------------------~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 211 (312)
T 4ery_A 160 ---------------------------DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT- 211 (312)
T ss_dssp ---------------------------TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEE-
T ss_pred ---------------------------CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEc-
Confidence 7899999999999999999988877766666667888999999999998632
Q ss_pred eeec----CceeeeeeeeecCCCcceEE--EEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecccccc
Q 018858 246 LDQS----GGKRLHLDYSVGGHTAAASC--VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK 319 (349)
Q Consensus 246 ~~~~----~~~~~~~~~~~~~h~~~i~~--i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 319 (349)
.++. .....+.+..+.+|...+.. ..+++ +++.+|++|+.||.|++||+.++ ..+..+.+|..
T Consensus 212 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~sg~~dg~i~vwd~~~~---------~~~~~~~~h~~ 280 (312)
T 4ery_A 212 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV--TGGKWIVSGSEDNLVYIWNLQTK---------EIVQKLQGHTD 280 (312)
T ss_dssp TTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEEC--SSSCEEEECCTTSCEEEEETTTC---------CEEEEECCCSS
T ss_pred CCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEe--CCCcEEEEECCCCEEEEEECCCc---------hhhhhhhccCC
Confidence 2222 12233455666677654332 23332 67899999999999999999987 67778889999
Q ss_pred ceEEEEeecCCCCcEEEee--CCCeEEEeeCC
Q 018858 320 KVNWLCTTPTESENLVVCD--TSKVVKVYSIS 349 (349)
Q Consensus 320 ~v~~~~~~~~~~~~l~~~~--~dg~i~iw~~~ 349 (349)
.|.+++|+| ++.+|++++ .|+.|++|+..
T Consensus 281 ~v~~~~~~p-~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 281 VVISTACHP-TENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CEEEEEECS-SSSEEEEEECTTTCCEEEEECC
T ss_pred cEEEEeecC-cCCceEEEEccCCccEEEecCC
Confidence 999999998 777899886 69999999863
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-46 Score=311.02 Aligned_cols=292 Identities=16% Similarity=0.159 Sum_probs=247.4
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
.+..++|++|.+.|++++|+|+ +++|++|+.||+|++||..+++....+..|...|.+++|+|++.++++++.|+.+++
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s~d-~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v 132 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWCKD-KRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV 132 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEE
T ss_pred cEEEEEecCCCCeEEEEEECCC-CCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEE
Confidence 3456789999999999999998 899999999999999999999998899999999999999999999999999999999
Q ss_pred EEccCCC---cccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCC
Q 018858 85 FDVHMPA---SWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE 161 (349)
Q Consensus 85 wd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 161 (349)
|++.... .......+..|...|.+++|+|++..|++++.|+.|++||+++++.+..+. +|...|.+++|+|.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~-~h~~~v~~~~~~~~---- 207 (354)
T 2pbi_B 133 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFH-GHGADVLCLDLAPS---- 207 (354)
T ss_dssp EECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECCC----
T ss_pred EEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEc-CCCCCeEEEEEEeC----
Confidence 9987532 123344556788999999999999999999999999999999999999999 99999999999882
Q ss_pred CCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEE
Q 018858 162 GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA 241 (349)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (349)
+++++|++|+.||.|++||+++++....+.. ....+.+++|+|++..++
T Consensus 208 ------------------------------~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~-h~~~v~~v~~~p~~~~l~ 256 (354)
T 2pbi_B 208 ------------------------------ETGNTFVSGGCDKKAMVWDMRSGQCVQAFET-HESDVNSVRYYPSGDAFA 256 (354)
T ss_dssp ------------------------------SSCCEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEE
T ss_pred ------------------------------CCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCCCeEEEEEeCCCCEEE
Confidence 1468999999999999999998877665543 456789999999999998
Q ss_pred EeeeeeecCc----eeeeeeeeec--CCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecc
Q 018858 242 EMEILDQSGG----KRLHLDYSVG--GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI 315 (349)
Q Consensus 242 ~~~~~~~~~~----~~~~~~~~~~--~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 315 (349)
+ ++.|..+. ........+. .+...+.++.|+ |++++|++|+.|+.|++||+.++ ..+..+.
T Consensus 257 s-~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s---~~g~~l~~g~~d~~i~vwd~~~~---------~~~~~l~ 323 (354)
T 2pbi_B 257 S-GSDDATCRLYDLRADREVAIYSKESIIFGASSVDFS---LSGRLLFAGYNDYTINVWDVLKG---------SRVSILF 323 (354)
T ss_dssp E-EETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC---TTSSEEEEEETTSCEEEEETTTC---------SEEEEEC
T ss_pred E-EeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEe---CCCCEEEEEECCCcEEEEECCCC---------ceEEEEE
Confidence 5 33333221 1112222232 234578999999 89999999999999999999887 5666778
Q ss_pred ccccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 316 NLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 316 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
+|...|++++|+| ++++|++++.||.|++|+
T Consensus 324 ~h~~~v~~l~~sp-dg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 324 GHENRVSTLRVSP-DGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CCSSCEEEEEECT-TSSCEEEEETTSEEEEEC
T ss_pred CCCCcEEEEEECC-CCCEEEEEcCCCCEEecC
Confidence 9999999999988 889999999999999996
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-46 Score=332.79 Aligned_cols=325 Identities=16% Similarity=0.143 Sum_probs=254.1
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEee-------cCCCCeEEEEEecCCCEEEEEe
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD-------VGNGPVTSLCFKSGNEDIIYVS 77 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~ 77 (349)
.+..+.+.+|.+.|++++|+|+ +++|++++.|++|++||+.+++.+..+. +|...|.+++|+|++++|++++
T Consensus 180 ~~~~~~l~~H~~~V~~v~fspd-g~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s 258 (611)
T 1nr0_A 180 FKFKSTFGEHTKFVHSVRYNPD-GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS 258 (611)
T ss_dssp BEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEE
T ss_pred CeEeeeeccccCceEEEEECCC-CCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEe
Confidence 4556788999999999999998 8999999999999999999999888874 7999999999999999999999
Q ss_pred CCCeEEEEEccCCCcccc----------------------------------------eeeccCcccceEEEEEccCCCE
Q 018858 78 SGKEVKSFDVHMPASWRP----------------------------------------LESYNYNKEEINQIVCNPKSSF 117 (349)
Q Consensus 78 ~dg~i~iwd~~~~~~~~~----------------------------------------~~~~~~~~~~v~~~~~~~~~~~ 117 (349)
.|++|++||+++++.... ...+.+|...|++++|+|++++
T Consensus 259 ~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~ 338 (611)
T 1nr0_A 259 ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKT 338 (611)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred CCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCE
Confidence 999999999987643221 1234578889999999999999
Q ss_pred EEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCC-CCCCC-----------------------------
Q 018858 118 LACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEG-LPENN----------------------------- 167 (349)
Q Consensus 118 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~----------------------------- 167 (349)
|++++.|+.|++||+.+++....+...|...+.+++|++++.... ..+..
T Consensus 339 l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (611)
T 1nr0_A 339 LFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLA 418 (611)
T ss_dssp EEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEE
T ss_pred EEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEE
Confidence 999999999999999998877666337888999999987653221 11100
Q ss_pred -CCCc--------------------cccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCC
Q 018858 168 -GNAG--------------------QCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKP 226 (349)
Q Consensus 168 -~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 226 (349)
.+.+ .......+.+++++| ++++|++|+.|+.|++||+...............
T Consensus 419 ~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~sp------dg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~ 492 (611)
T 1nr0_A 419 VSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN------DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPA 492 (611)
T ss_dssp ECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECT------TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSS
T ss_pred EeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeC------CCCEEEEeCCCCeEEEEEccCCceeeeeccCCCC
Confidence 0000 000123456778888 9999999999999999999876432221234567
Q ss_pred ccceeeeeccccEEEEeeeeeecCc----ee-eeeeee--ecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCC
Q 018858 227 LKGSQSTSKVNIRDAEMEILDQSGG----KR-LHLDYS--VGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~--~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 299 (349)
.+.+++|+|+|+++++. ..+..+. .. .++... +.+|...|++++|+ |++++|++|+.|++|++||+..+
T Consensus 493 ~v~~v~fspdg~~las~-s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fs---pdg~~lasgs~D~~v~lW~~~~~ 568 (611)
T 1nr0_A 493 EITSVAFSNNGAFLVAT-DQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWS---PDNVRLATGSLDNSVIVWNMNKP 568 (611)
T ss_dssp CEEEEEECTTSSEEEEE-ETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEEC---TTSSEEEEEETTSCEEEEETTCT
T ss_pred ceEEEEECCCCCEEEEE-cCCCCEEEEEcCCCCceeeeeeeeecccceeEEEEC---CCCCEEEEEECCCcEEEEECCCc
Confidence 89999999999999853 3222211 11 222222 34499999999999 99999999999999999999876
Q ss_pred cceecccccceeeecccc-ccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 300 QGVQTSINNDLLIKNINL-NKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.. ..+....+| ...|++++|+| +++ |++++.|++|++|+++
T Consensus 569 ~~-------~~~~~~~~h~~~~v~~v~fs~-d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 569 SD-------HPIIIKGAHAMSSVNSVIWLN-ETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp TS-------CCEEETTSSTTSCEEEEEEEE-TTE-EEEEETTSCEEEEECC
T ss_pred cc-------ccchhhccCcccCeeEEEEcC-CCE-EEEecCCCCEEEEecc
Confidence 31 122456788 89999999988 776 9999999999999974
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-47 Score=316.93 Aligned_cols=288 Identities=14% Similarity=0.109 Sum_probs=228.6
Q ss_pred eeCCceeeeEEEEecCCCceEEEeCC------CCcEEEEECCCCcE----EEEeecCCCCeEEEEEecCCCEEEEEeCCC
Q 018858 11 LRGHKATATCCIASRDRPGFVASSGE------DGCICWFDLRSKDV----QLVTDVGNGPVTSLCFKSGNEDIIYVSSGK 80 (349)
Q Consensus 11 l~~h~~~i~~~~~~~~~~~~l~t~~~------dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 80 (349)
...|+..|++++|+|+ |++|++|+. |+.|++|+..++.. ......|...|.+++|+|++. +++++.||
T Consensus 38 p~~H~~~V~~v~fSpD-G~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg 115 (357)
T 4g56_B 38 PACMEVQIGAVRYRRD-GALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSG 115 (357)
T ss_dssp --CCCSEEEEEEECSS-SCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTS
T ss_pred cccccCCEEEEEECCC-CCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCC
Confidence 4569999999999999 899999997 77899999876653 233456888999999999876 55678899
Q ss_pred eEEEEEccCCCccccee-eccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCC
Q 018858 81 EVKSFDVHMPASWRPLE-SYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKP 159 (349)
Q Consensus 81 ~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 159 (349)
.|++||+.+++...... ...+|...|++++|+|++++|++|+.|+.|++||+++++++..+. .|...|.+++|+|+
T Consensus 116 ~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~-~h~~~v~~v~~s~~-- 192 (357)
T 4g56_B 116 AVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYN-AHSSEVNCVAACPG-- 192 (357)
T ss_dssp CEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTT--
T ss_pred EEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEc-CCCCCEEEEEEccC--
Confidence 99999998765433222 344688899999999999999999999999999999999999999 99999999999993
Q ss_pred CCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecC-CCCCCccceeeeecccc
Q 018858 160 WEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK-STTKPLKGSQSTSKVNI 238 (349)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 238 (349)
...++++++.||.|++||+++++...... ......+.+++|+|++.
T Consensus 193 ---------------------------------~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~ 239 (357)
T 4g56_B 193 ---------------------------------KDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKD 239 (357)
T ss_dssp ---------------------------------CSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTST
T ss_pred ---------------------------------CCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhccc
Confidence 34578999999999999999877655443 34456788999999865
Q ss_pred EEEEeeeeeecC----ceeeeeeeeecCCCcceEEEEEeeecCCc-cEEEEeeCCCeEEEEecCCCcceecccccceeee
Q 018858 239 RDAEMEILDQSG----GKRLHLDYSVGGHTAAASCVAFSMFGERG-KYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIK 313 (349)
Q Consensus 239 ~~~~~~~~~~~~----~~~~~~~~~~~~h~~~i~~i~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 313 (349)
.+++.+..+..+ ....+....+.+|...|++++|+ |++ ++|++|+.|++|+|||++++ +++ .
T Consensus 240 ~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~s---p~~~~~lasgs~D~~i~iwd~~~~---------~~~-~ 306 (357)
T 4g56_B 240 DTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYS---YHSSPFLASISEDCTVAVLDADFS---------EVF-R 306 (357)
T ss_dssp TEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEEC---SSSSCCEEEEETTSCEEEECTTSC---------EEE-E
T ss_pred ceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEc---CCCCCEEEEEeCCCEEEEEECCCC---------cEe-E
Confidence 544455544432 22445667788999999999999 666 68999999999999999986 444 3
Q ss_pred ccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 314 NINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 314 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
..+|.+.|++++|+|.++++|++++.||+|++|+++
T Consensus 307 ~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 307 DLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp ECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred ECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECC
Confidence 458999999999998788899999999999999984
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-46 Score=311.41 Aligned_cols=286 Identities=12% Similarity=0.060 Sum_probs=227.8
Q ss_pred eCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCC-----------CcEEEEeecCCCCeEEEEEecCCCEEEEEeCCC
Q 018858 12 RGHKATATCCIASRDRPGFVASSGEDGCICWFDLRS-----------KDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGK 80 (349)
Q Consensus 12 ~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 80 (349)
..|...|.+++|+|+ |++|++++ |+++++||... .........+..+|.+++|+|++ .|++++.||
T Consensus 27 ~~~~~~v~~~~fs~d-G~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg 103 (344)
T 4gqb_B 27 ACMERQLEAARYRSD-GALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSG 103 (344)
T ss_dssp SSCCSEEEEEEECTT-SCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTS
T ss_pred ccccCCEEEEEECCC-CCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCC
Confidence 457788999999999 88888887 67888886310 01111222356789999999985 688999999
Q ss_pred eEEEEEccCCCccccee-eccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCC
Q 018858 81 EVKSFDVHMPASWRPLE-SYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKP 159 (349)
Q Consensus 81 ~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 159 (349)
.|++||+++++...... ...+|...|++++|+|++++|++|+.|+.|++||+++++++..+. +|...|.+++|+|+
T Consensus 104 ~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~-~h~~~V~~~~~~~~-- 180 (344)
T 4gqb_B 104 AVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYR-AHAAQVTCVAASPH-- 180 (344)
T ss_dssp EEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECSS--
T ss_pred EEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEc-CcCCceEEEEecCC--
Confidence 99999999876544433 345788999999999999999999999999999999999999999 99999999999993
Q ss_pred CCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCC-CCCCccceeeeecccc
Q 018858 160 WEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS-TTKPLKGSQSTSKVNI 238 (349)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 238 (349)
...+|++++.|+.|++||+++++....... .....+.+++|+|++.
T Consensus 181 ---------------------------------~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 227 (344)
T 4gqb_B 181 ---------------------------------KDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQS 227 (344)
T ss_dssp ---------------------------------CTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCT
T ss_pred ---------------------------------CCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCC
Confidence 346889999999999999998877665543 3345678899999665
Q ss_pred EEEEeeeeeec----CceeeeeeeeecCCCcceEEEEEeeecCCc-cEEEEeeCCCeEEEEecCCCcceecccccceeee
Q 018858 239 RDAEMEILDQS----GGKRLHLDYSVGGHTAAASCVAFSMFGERG-KYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIK 313 (349)
Q Consensus 239 ~~~~~~~~~~~----~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 313 (349)
.+++.+..|+. .....+++..+.+|...|++++|+ |++ ++|++|+.|++|+|||+.++ ++ ..
T Consensus 228 ~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fs---p~g~~~lasgs~D~~i~vwd~~~~---------~~-~~ 294 (344)
T 4gqb_B 228 EVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFS---PHSVPFLASLSEDCSLAVLDSSLS---------EL-FR 294 (344)
T ss_dssp TEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEEC---SSSSCCEEEEETTSCEEEECTTCC---------EE-EE
T ss_pred cceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEc---cCCCeEEEEEeCCCeEEEEECCCC---------cE-EE
Confidence 44445544433 233456778889999999999999 787 68999999999999999886 33 35
Q ss_pred ccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 314 NINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 314 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
..+|.+.|++++|+|.+..+|++++.|++|++|+++
T Consensus 295 ~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 295 SQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVP 330 (344)
T ss_dssp ECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred EcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECC
Confidence 678999999999999544567799999999999974
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-46 Score=317.10 Aligned_cols=299 Identities=14% Similarity=0.115 Sum_probs=241.4
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
....++|++|.+.|++++|+|+ +++|++|+.||+|++||+.+++....+..|...|.+++|+|++++|++|+.|+.+++
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp~-~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i 134 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTPE-KNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI 134 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECTT-SSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred eEEeecccccccEEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence 3456789999999999999998 899999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCC----cccceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCceEeceec----cccccceeEEEEc
Q 018858 85 FDVHMPA----SWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYKSLR----AGHSSICSSVQFI 155 (349)
Q Consensus 85 wd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~~v~~~~~~ 155 (349)
|++.+.. .......+.+|...+.++.|.|++ ..|++|+.|+.|++||+++++.+..+. .+|...+.+++|+
T Consensus 135 w~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 214 (380)
T 3iz6_a 135 FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN 214 (380)
T ss_dssp EECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEEC
T ss_pred EECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEee
Confidence 9997532 123345567888999999999974 679999999999999999998877662 2688889999997
Q ss_pred cCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeec
Q 018858 156 PWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSK 235 (349)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (349)
|. ++++|++|+.||.|++||++...............+.+++|+|
T Consensus 215 ~~-----------------------------------~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p 259 (380)
T 3iz6_a 215 SL-----------------------------------NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFP 259 (380)
T ss_dssp SS-----------------------------------SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECT
T ss_pred cC-----------------------------------CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEec
Confidence 73 6889999999999999999854333323334567899999999
Q ss_pred cccEEEEeeeeeecCc----eeeeeeeeecC-------CCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceec
Q 018858 236 VNIRDAEMEILDQSGG----KRLHLDYSVGG-------HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 304 (349)
Q Consensus 236 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~-------h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~ 304 (349)
+++++++ ++.|+.+. .....+..+.. +...|++++|+ |+|++|++|+.||.|++||+..++...
T Consensus 260 ~~~~l~s-~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---~~g~~l~~g~~dg~i~vwd~~~~~~~~- 334 (380)
T 3iz6_a 260 DGQRFGT-GSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFS---ISGRLLFAGYSNGDCYVWDTLLAEMVL- 334 (380)
T ss_dssp TSSEEEE-ECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEEC---SSSSEEEEECTTSCEEEEETTTCCEEE-
T ss_pred CCCeEEE-EcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEEC---CCCCEEEEEECCCCEEEEECCCCceEE-
Confidence 9999985 33333221 12223333332 22358999999 899999999999999999998874221
Q ss_pred ccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 305 SINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 305 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.+.....+|.+.|++++|+| ++++|++|+.||.|++|+++
T Consensus 335 ----~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 335 ----NLGTLQNSHEGRISCLGLSS-DGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp ----EECCSCSSCCCCCCEEEECS-SSSEEEEECTTSCEEEEECC
T ss_pred ----EEecccCCCCCceEEEEECC-CCCEEEEeeCCCCEEEEecC
Confidence 11112257999999999988 88999999999999999974
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-45 Score=324.66 Aligned_cols=326 Identities=13% Similarity=0.088 Sum_probs=239.4
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK 83 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 83 (349)
+++..+.+.+|.+.|++++|+|++...|++|+.|++|++||..+++....+.+|...|.+++|+|++++|++++.|+.|+
T Consensus 136 ~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~ 215 (611)
T 1nr0_A 136 TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIV 215 (611)
T ss_dssp TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEE
Confidence 45567788999999999999998434699999999999999999888899999999999999999999999999999999
Q ss_pred EEEccCCCcccceee----ccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccc--cccceeEEEEccC
Q 018858 84 SFDVHMPASWRPLES----YNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAG--HSSICSSVQFIPW 157 (349)
Q Consensus 84 iwd~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~~~ 157 (349)
+||+.+++....+.. ..+|...|.+++|+|++++|++++.|+.|++||+++++++..+... +......+.|..+
T Consensus 216 lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (611)
T 1nr0_A 216 LYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ 295 (611)
T ss_dssp EEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSS
T ss_pred EEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCC
Confidence 999987654333211 1168899999999999999999999999999999998877766511 1223344444221
Q ss_pred CCCCCCCCCC-----CCCcc-----ccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCC-----
Q 018858 158 KPWEGLPENN-----GNAGQ-----CYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS----- 222 (349)
Q Consensus 158 ~~~~~~~~~~-----~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----- 222 (349)
....+..++. ...+. .-+...+.+++++| ++++|++++.|+.|++||+.+++.......
T Consensus 296 ~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~sp------dg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~ 369 (611)
T 1nr0_A 296 ALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSA------DGKTLFSADAEGHINSWDISTGISNRVFPDVHATM 369 (611)
T ss_dssp CEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECT------TSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSC
T ss_pred EEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeC------CCCEEEEEeCCCcEEEEECCCCceeeecccCCcce
Confidence 1111111111 00000 11334577777777 788888888888888888876543221100
Q ss_pred ----------------------------------------------------------------------------CCCC
Q 018858 223 ----------------------------------------------------------------------------TTKP 226 (349)
Q Consensus 223 ----------------------------------------------------------------------------~~~~ 226 (349)
....
T Consensus 370 v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~ 449 (611)
T 1nr0_A 370 ITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISY 449 (611)
T ss_dssp EEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSS
T ss_pred EEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCC
Confidence 0012
Q ss_pred ccceeeeeccccEEEEeeeeeecCce------eeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCc
Q 018858 227 LKGSQSTSKVNIRDAEMEILDQSGGK------RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ 300 (349)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 300 (349)
.+.+++|+|||+++++ ++.|..+.. ....... .+|...|++++|+ |++++|++++.|++|++||+.+..
T Consensus 450 ~v~~va~spdg~~las-gs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fs---pdg~~las~s~d~~v~~w~~~~~~ 524 (611)
T 1nr0_A 450 NSSCVALSNDKQFVAV-GGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFS---NNGAFLVATDQSRKVIPYSVANNF 524 (611)
T ss_dssp CEEEEEECTTSCEEEE-EETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEEC---TTSSEEEEEETTSCEEEEEGGGTT
T ss_pred CceEEEEeCCCCEEEE-eCCCCeEEEEEccCCceeeeec-cCCCCceEEEEEC---CCCCEEEEEcCCCCEEEEEcCCCC
Confidence 3456788999998885 333322111 1122233 5789999999999 999999999999999999998731
Q ss_pred ceecccccceeee--ccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 301 GVQTSINNDLLIK--NINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 301 ~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.+... ...|...|++++|+| ++++|++++.|++|++|++.
T Consensus 525 --------~~~~~~~~~~H~~~V~~v~fsp-dg~~lasgs~D~~v~lW~~~ 566 (611)
T 1nr0_A 525 --------ELAHTNSWTFHTAKVACVSWSP-DNVRLATGSLDNSVIVWNMN 566 (611)
T ss_dssp --------EESCCCCCCCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETT
T ss_pred --------ceeeeeeeeecccceeEEEECC-CCCEEEEEECCCcEEEEECC
Confidence 23222 334999999999988 89999999999999999973
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-44 Score=297.14 Aligned_cols=294 Identities=14% Similarity=0.081 Sum_probs=226.4
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC--cEEEEe-ec-CCCCeEEEEEecCCCEEEEEeCC
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK--DVQLVT-DV-GNGPVTSLCFKSGNEDIIYVSSG 79 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~--~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~~d 79 (349)
+.++++.|++|.++|++++|+|+ +|++|+.|+.|++||+..+ +....+ .. |...|.+++|+|++++|++++.|
T Consensus 3 ~~~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D 79 (330)
T 2hes_X 3 SINLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD 79 (330)
T ss_dssp CCEEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT
T ss_pred ccccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC
Confidence 46778999999999999999975 9999999999999999875 345555 34 99999999999999999999999
Q ss_pred CeEEEEEccCCC----cccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCC----ceEeceeccccccceeE
Q 018858 80 KEVKSFDVHMPA----SWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ----HCLYKSLRAGHSSICSS 151 (349)
Q Consensus 80 g~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~~v~~ 151 (349)
+.|++||++... ....+..+.+|...|.+++|+|++++|++|+.|+.|++||++. .+++..+. +|...|.+
T Consensus 80 ~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~-~h~~~v~~ 158 (330)
T 2hes_X 80 STVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQ-EHSQDVKH 158 (330)
T ss_dssp SCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEEC-CCSSCEEE
T ss_pred CcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEec-cCCCceEE
Confidence 999999986421 1234566778999999999999999999999999999999953 25667778 89999999
Q ss_pred EEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCc--eeeeecCCCCCCccc
Q 018858 152 VQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE--LNISRSKSTTKPLKG 229 (349)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~~ 229 (349)
++|+| ++.+|++++.|+.|++||.+.+ +....+ ......+.
T Consensus 159 v~~~p------------------------------------~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~-~~h~~~v~ 201 (330)
T 2hes_X 159 VIWHP------------------------------------SEALLASSSYDDTVRIWKDYDDDWECVAVL-NGHEGTVW 201 (330)
T ss_dssp EEECS------------------------------------SSSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEE
T ss_pred EEECC------------------------------------CCCEEEEEcCCCeEEEEECCCCCeeEEEEc-cCCCCcEE
Confidence 99999 7899999999999999998765 233333 33456788
Q ss_pred eeeeecc--ccEEEEeeeeeecCce------------eeeeeeeecC-CCcceEEEEEeeecCCccEEEEeeCCCeEEEE
Q 018858 230 SQSTSKV--NIRDAEMEILDQSGGK------------RLHLDYSVGG-HTAAASCVAFSMFGERGKYLISGGNDKLVKVW 294 (349)
Q Consensus 230 ~~~~~~~--~~~~~~~~~~~~~~~~------------~~~~~~~~~~-h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vw 294 (349)
.++|+|+ +..+++ ++.|..+.. .......+.+ |...|++++|+ +++ +|++++.||.|++|
T Consensus 202 ~~~~~~~~~~~~l~s-~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---~~~-~l~s~~~dg~v~iw 276 (330)
T 2hes_X 202 SSDFDKTEGVFRLCS-GSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWG---FNG-LIASVGADGVLAVY 276 (330)
T ss_dssp EEEECCSSSSCEEEE-EETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEEC---TTS-CEEEEETTSCEEEE
T ss_pred EEEecCCCCeeEEEE-EeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEc---CCC-EEEEEeCCCEEEEE
Confidence 9999998 566664 333332211 1133444554 88999999998 654 89999999999999
Q ss_pred ecCCCcceecccccceeeecccccc-ceEEEEeecC-CCCcEEEeeCCCeEEEeeCC
Q 018858 295 DCSRFQGVQTSINNDLLIKNINLNK-KVNWLCTTPT-ESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 295 d~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~-~~~~l~~~~~dg~i~iw~~~ 349 (349)
|..+++.. .......+|.. .|++++|+|. ++++|++++.||.|++|+++
T Consensus 277 ~~~~~~~~------~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~ 327 (330)
T 2hes_X 277 EEVDGEWK------VFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLE 327 (330)
T ss_dssp EEETTEEE------EEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC-
T ss_pred EcCCCceE------EEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEec
Confidence 98765210 12233457877 8999999885 57899999999999999974
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-44 Score=304.31 Aligned_cols=281 Identities=16% Similarity=0.173 Sum_probs=236.5
Q ss_pred CCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCC------------------CeEEEEEecCCCEEE
Q 018858 13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNG------------------PVTSLCFKSGNEDII 74 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~------------------~v~~~~~~~~~~~l~ 74 (349)
+|.+.|.|++|+|+ +++|++|+ ++.+++|++.+++.+..+..|.. .|.+++|+|++++|+
T Consensus 62 ~h~~~V~~v~fspd-g~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~ 139 (393)
T 1erj_A 62 DHTSVVCCVKFSND-GEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 139 (393)
T ss_dssp ECSSCCCEEEECTT-SSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred CCCCEEEEEEECCC-CCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence 59999999999998 89999987 68999999999998877765432 489999999999999
Q ss_pred EEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEE
Q 018858 75 YVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQF 154 (349)
Q Consensus 75 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 154 (349)
+++.|+.|++||++++ +.+..+.+|...|.+++|+|++++|++++.|+.|++||+++++....+. +...+.+++|
T Consensus 140 s~~~d~~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~ 214 (393)
T 1erj_A 140 TGAEDRLIRIWDIENR---KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS--IEDGVTTVAV 214 (393)
T ss_dssp EEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEE
T ss_pred EEcCCCeEEEEECCCC---cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE--cCCCcEEEEE
Confidence 9999999999999875 4455677888999999999999999999999999999999998887776 5677999999
Q ss_pred ccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecC------CCCCCcc
Q 018858 155 IPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK------STTKPLK 228 (349)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------~~~~~~~ 228 (349)
+|. ++++|++|+.||.|++||++++....... ......+
T Consensus 215 ~~~-----------------------------------~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v 259 (393)
T 1erj_A 215 SPG-----------------------------------DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSV 259 (393)
T ss_dssp CST-----------------------------------TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCE
T ss_pred ECC-----------------------------------CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCE
Confidence 984 68899999999999999999877655442 2345678
Q ss_pred ceeeeeccccEEEEeeeeeecCce----------------eeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEE
Q 018858 229 GSQSTSKVNIRDAEMEILDQSGGK----------------RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVK 292 (349)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~ 292 (349)
.+++|+|+++++++ +..|+.+.. ...+...+.+|...|.+++++ +++++|++|+.|+.|+
T Consensus 260 ~~v~~~~~g~~l~s-~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~l~sgs~D~~v~ 335 (393)
T 1erj_A 260 YSVVFTRDGQSVVS-GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT---QNDEYILSGSKDRGVL 335 (393)
T ss_dssp EEEEECTTSSEEEE-EETTSEEEEEEC---------------CEEEEEECCSSCEEEEEEC---GGGCEEEEEETTSEEE
T ss_pred EEEEECCCCCEEEE-EeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEEC---CCCCEEEEEeCCCeEE
Confidence 89999999999985 332222110 123445677899999999999 8999999999999999
Q ss_pred EEecCCCcceecccccceeeeccccccceEEEEeec-----CCCCcEEEeeCCCeEEEeeC
Q 018858 293 VWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP-----TESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 293 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~l~~~~~dg~i~iw~~ 348 (349)
+||+.++ ..+..+.+|...|.+++|++ +++++|++++.||.|++|++
T Consensus 336 iwd~~~~---------~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~ 387 (393)
T 1erj_A 336 FWDKKSG---------NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 387 (393)
T ss_dssp EEETTTC---------CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred EEECCCC---------eEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcc
Confidence 9999987 56677889999999999976 25778999999999999996
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-44 Score=294.58 Aligned_cols=300 Identities=15% Similarity=0.133 Sum_probs=236.4
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCC-----CcEEEEeecCCCCeEEEEEecCCCEEEEEeCC
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRS-----KDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG 79 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 79 (349)
..+..+|++|.+.|++++|+|+++++|++|+.|++|++|++.. +..+..+.+|...|.+++|+|++++|++++.|
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D 86 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWD 86 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCC
Confidence 3566789999999999999997568999999999999999864 23467889999999999999999999999999
Q ss_pred CeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCC
Q 018858 80 KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKP 159 (349)
Q Consensus 80 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 159 (349)
+.|++||+++++ .+..+.+|...|.+++|+|++.+|++|+.|+.|++||++. +.+..+. +|...+.++.|.|...
T Consensus 87 ~~v~~wd~~~~~---~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~-~h~~~v~~~~~~~~~~ 161 (319)
T 3frx_A 87 KTLRLWDVATGE---TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLL-GHNDWVSQVRVVPNEK 161 (319)
T ss_dssp SEEEEEETTTTE---EEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEEEEC-CCSSCEEEEEECCC--
T ss_pred CEEEEEECCCCC---eeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEe-ccCCcEEEEEEccCCC
Confidence 999999999763 4556677889999999999999999999999999999974 4566777 8999999999998421
Q ss_pred CCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccE
Q 018858 160 WEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIR 239 (349)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (349)
.. .++..+++++.|+.|++||+++.+....... ....+..++|+|++++
T Consensus 162 ~~------------------------------~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-h~~~v~~~~~sp~g~~ 210 (319)
T 3frx_A 162 AD------------------------------DDSVTIISAGNDKMVKAWNLNQFQIEADFIG-HNSNINTLTASPDGTL 210 (319)
T ss_dssp ----------------------------------CCEEEEEETTSCEEEEETTTTEEEEEECC-CCSCEEEEEECTTSSE
T ss_pred CC------------------------------CCccEEEEEeCCCEEEEEECCcchhheeecC-CCCcEEEEEEcCCCCE
Confidence 10 1456899999999999999998766554443 4567899999999999
Q ss_pred EEEeeeeeec----CceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecc
Q 018858 240 DAEMEILDQS----GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI 315 (349)
Q Consensus 240 ~~~~~~~~~~----~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 315 (349)
+++. ..|+. .....+.+..+.. ...|.+++|+ |++.+|++++.+ .+++|++........... .......
T Consensus 211 l~s~-~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~s---p~~~~la~~~~~-~i~v~~~~~~~~~~~~~~-~~~~~~~ 283 (319)
T 3frx_A 211 IASA-GKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFS---PNRYWLAAATAT-GIKVFSLDPQYLVDDLRP-EFAGYSK 283 (319)
T ss_dssp EEEE-ETTCEEEEEETTTTEEEEEEEC-CSCEEEEEEC---SSSSEEEEEETT-EEEEEEETTEEEEEEECC-CCTTCCG
T ss_pred EEEE-eCCCeEEEEECCCCcEEEEecC-CCcEEEEEEc---CCCCEEEEEcCC-CcEEEEeCcCeeeeccCc-ccccccc
Confidence 9853 32222 2223344455554 4679999999 899999988754 599999987532211000 0011123
Q ss_pred ccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 316 NLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 316 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.|...+.+++|+| +|++|++++.||.|++||+
T Consensus 284 ~~~~~v~~~~~sp-dg~~l~sg~~Dg~i~vWd~ 315 (319)
T 3frx_A 284 AAEPHAVSLAWSA-DGQTLFAGYTDNVIRVWQV 315 (319)
T ss_dssp GGCCCEEEEEECT-TSSEEEEEETTSCEEEEEE
T ss_pred CcCcceeEEEECC-CCCEEEEeecCceEEEEEE
Confidence 4567899999988 8999999999999999997
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-43 Score=288.53 Aligned_cols=271 Identities=16% Similarity=0.197 Sum_probs=214.3
Q ss_pred CeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCC--CcEEEEeecCCCCeEEEEEec--CCCEEEEEeCCCeEE
Q 018858 8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRS--KDVQLVTDVGNGPVTSLCFKS--GNEDIIYVSSGKEVK 83 (349)
Q Consensus 8 ~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~ 83 (349)
+..+.+|.+.|++++|+|+ +++|++|+.|++|++||+.. .+.+..+.+|..+|.+++|++ ++++|++++.|++|+
T Consensus 2 ~~~~~~h~~~V~~~~~s~~-g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~ 80 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYY-GKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVM 80 (297)
T ss_dssp CEECCSCSSCEEEEEECTT-SSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEE
T ss_pred ceeccCCcCceEEEEECCC-CCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEE
Confidence 4567899999999999998 89999999999999999974 356788999999999999986 389999999999999
Q ss_pred EEEccCCCcccceeeccCcccceEEEEEccC--CCEEEEEcCCCcEEEEEcCCceE--eceeccccccceeEEEEccCCC
Q 018858 84 SFDVHMPASWRPLESYNYNKEEINQIVCNPK--SSFLACADDGGDVKIIDIRQHCL--YKSLRAGHSSICSSVQFIPWKP 159 (349)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~ 159 (349)
+||+++++ ...+..+..|...|.+++|+|+ +.+|++++.|+.|++||++++.. ...+. +|...|.+++|+|+..
T Consensus 81 iWd~~~~~-~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~ 158 (297)
T 2pm7_B 81 IWKEENGR-WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPATI 158 (297)
T ss_dssp EEEBSSSC-BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEE-CCSSCEEEEEECCCC-
T ss_pred EEEcCCCc-eEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeee-cccCccceEeecCCcc
Confidence 99998753 2334456678889999999997 78999999999999999986532 34456 7899999999999421
Q ss_pred CCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccE
Q 018858 160 WEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIR 239 (349)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (349)
... + ..... .++++|++|+.|+.|++||++++.
T Consensus 159 ~~~--------~---------~~~~~------~~~~~l~sgs~D~~v~lwd~~~~~------------------------ 191 (297)
T 2pm7_B 159 EED--------G---------EHNGT------KESRKFVTGGADNLVKIWKYNSDA------------------------ 191 (297)
T ss_dssp ----------------------------------CCEEEEEETTSCEEEEEEETTT------------------------
T ss_pred ccc--------c---------cCCCC------CCcceEEEEcCCCcEEEEEEcCCC------------------------
Confidence 000 0 00000 136799999999999999998631
Q ss_pred EEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCC---ccEEEEeeCCCeEEEEecCCCcceecccccceeeeccc
Q 018858 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGER---GKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNIN 316 (349)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~---~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 316 (349)
........+.+|...|++++|+ |+ +++|++++.|++|++||++....... ..+.....
T Consensus 192 ------------~~~~~~~~l~~H~~~V~~v~~s---p~~~~~~~las~s~D~~v~iWd~~~~~~~~~----~~~~~~~~ 252 (297)
T 2pm7_B 192 ------------QTYVLESTLEGHSDWVRDVAWS---PTVLLRSYMASVSQDRTCIIWTQDNEQGPWK----KTLLKEEK 252 (297)
T ss_dssp ------------TEEEEEEEECCCSSCEEEEEEC---CCCSSSEEEEEEETTSCEEEEEESSTTSCCE----EEESSSSC
T ss_pred ------------ceEEEEEEecCCCCceEEEEEC---CCCCCceEEEEEECCCcEEEEEeCCCCCccc----eeeeeccc
Confidence 1123456788999999999999 76 48999999999999999987421100 11111246
Q ss_pred cccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 317 LNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 317 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
|...|.+++|+| ++++|++++.||.|++|+.
T Consensus 253 ~~~~v~~~~~s~-~g~~las~~~D~~v~lw~~ 283 (297)
T 2pm7_B 253 FPDVLWRASWSL-SGNVLALSGGDNKVTLWKE 283 (297)
T ss_dssp CSSCEEEEEECS-SSCCEEEEETTSCEEEEEE
T ss_pred CCCcEEEEEECC-CCCEEEEEcCCCcEEEEEE
Confidence 788999999988 8889999999999999985
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-43 Score=314.00 Aligned_cols=313 Identities=20% Similarity=0.245 Sum_probs=259.5
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK 83 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 83 (349)
+++.++.+.+|...|.+++|+|+ ++.|++++.|+.|++||.. ++.+..+.+|...|.+++|+|++++|++++.|+.|+
T Consensus 251 ~~~~~~~~~~~~~~v~~v~~~~d-~~~l~~~~~d~~i~~w~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~ 328 (577)
T 2ymu_A 251 NGQLLQTLTGHSSSVNGVAFRPD-GQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVK 328 (577)
T ss_dssp TSCEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCEEEEEecCCCCEEEEEEcCC-CCEEEEEeCCCEEEEEeCC-CcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEE
Confidence 45677888999999999999998 8999999999999999964 677788899999999999999999999999999999
Q ss_pred EEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCC
Q 018858 84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
+||+.. ..+..+..|...+.+++|+|+++++++++.|+.|++||. +++.+..+. .|...|.+++|+|++.++..
T Consensus 329 ~w~~~~----~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~-~~~~~v~~~~~s~dg~~l~~ 402 (577)
T 2ymu_A 329 LWNRNG----QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVRGVAFSPDGQTIAS 402 (577)
T ss_dssp EEETTS----CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEE-CCSSCEEEEEECTTSSCEEE
T ss_pred EEeCCC----CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEec-CCCCCeEEEEECCCCCEEEE
Confidence 999864 334556678889999999999999999999999999995 567778888 89999999999999887632
Q ss_pred --CCCC----CCCccc-----cCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceee
Q 018858 164 --PENN----GNAGQC-----YNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQS 232 (349)
Q Consensus 164 --~~~~----~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 232 (349)
.+.. ...++. .....+.+++++| ++++|++++.|+.|++||.... ...... .....+..++
T Consensus 403 ~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~------d~~~l~~~~~d~~v~~w~~~~~-~~~~~~-~~~~~v~~~~ 474 (577)
T 2ymu_A 403 ASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP------DDQTIASASDDKTVKLWNRNGQ-LLQTLT-GHSSSVRGVA 474 (577)
T ss_dssp EETTSEEEEECTTCCEEEEEECCSSCEEEEEECT------TSSEEEEEETTSEEEEEETTSC-EEEEEE-CCSSCEEEEE
T ss_pred EeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECC------CCCEEEEEcCCCEEEEEECCCC-EEEEEc-CCCCCEEEEE
Confidence 2222 111221 2346678899988 8999999999999999997643 333322 2356789999
Q ss_pred eeccccEEEEeeeeeecCc---eeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccc
Q 018858 233 TSKVNIRDAEMEILDQSGG---KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINND 309 (349)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~ 309 (349)
|+|+++++++.+ .+..+. ...+++..+.+|...|++++|+ |++++|++++.|+.|++||... +
T Consensus 475 ~spd~~~las~~-~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s---~dg~~l~s~~~dg~v~lwd~~~----------~ 540 (577)
T 2ymu_A 475 FSPDGQTIASAS-DDKTVKLWNRNGQLLQTLTGHSSSVRGVAFS---PDGQTIASASDDKTVKLWNRNG----------Q 540 (577)
T ss_dssp ECTTSCEEEEEE-TTSEEEEEETTSCEEEEEECCSSCEEEEEEC---TTSSCEEEEETTSEEEEECTTS----------C
T ss_pred EcCCCCEEEEEe-CCCEEEEEcCCCCEEEEEeCCCCCEEEEEEc---CCCCEEEEEECcCEEEEEeCCC----------C
Confidence 999999998532 222211 1335667888999999999999 8999999999999999999754 5
Q ss_pred eeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 310 LLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 310 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
.+..+.+|.+.|++++|+| |+++|++++.|+.|++||
T Consensus 541 ~~~~~~~h~~~v~~~~fs~-dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 541 LLQTLTGHSSSVWGVAFSP-DGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred EEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCEEEEeC
Confidence 6778889999999999988 889999999999999997
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-43 Score=290.09 Aligned_cols=303 Identities=16% Similarity=0.170 Sum_probs=235.7
Q ss_pred CCccCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc-----EEEEeecCCCCeEEEEEecCCCEEEE
Q 018858 1 MTDAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD-----VQLVTDVGNGPVTSLCFKSGNEDIIY 75 (349)
Q Consensus 1 m~~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~ 75 (349)
|++++.+..+|+||++.|++++|+|+++++|+||+.||+|++||+.+.+ +...+.+|...|.+++|+|++++|++
T Consensus 24 ~~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s 103 (340)
T 4aow_A 24 MTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALS 103 (340)
T ss_dssp --CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred cCCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEE
Confidence 4556667788999999999999999867899999999999999987643 46778899999999999999999999
Q ss_pred EeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEec-eeccccccceeEEEE
Q 018858 76 VSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYK-SLRAGHSSICSSVQF 154 (349)
Q Consensus 76 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~v~~~~~ 154 (349)
++.|+.|++|+..... .......+...+....+++++++|++++.|+.+++||+....... ... +|...+..++|
T Consensus 104 ~~~d~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~-~~~~~v~~~~~ 179 (340)
T 4aow_A 104 GSWDGTLRLWDLTTGT---TTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDE-SHSEWVSCVRF 179 (340)
T ss_dssp EETTSEEEEEETTTTE---EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSS-SCSSCEEEEEE
T ss_pred EcccccceEEeecccc---eeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEec-cccCcccceEE
Confidence 9999999999998653 233333456778889999999999999999999999998665443 344 78889999999
Q ss_pred ccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeee
Q 018858 155 IPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTS 234 (349)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 234 (349)
++++ ...++++++.|+.|++||+++.+....... ....+.+++|+
T Consensus 180 ~~~~----------------------------------~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~-h~~~v~~~~~s 224 (340)
T 4aow_A 180 SPNS----------------------------------SNPIIVSCGWDKLVKVWNLANCKLKTNHIG-HTGYLNTVTVS 224 (340)
T ss_dssp CSCS----------------------------------SSCEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEEC
T ss_pred ccCC----------------------------------CCcEEEEEcCCCEEEEEECCCCceeeEecC-CCCcEEEEEEC
Confidence 8831 456788999999999999998877665543 35678999999
Q ss_pred ccccEEEEeeeeeec----CceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccce
Q 018858 235 KVNIRDAEMEILDQS----GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDL 310 (349)
Q Consensus 235 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 310 (349)
|+++++++. ..|+. .......+..+.. ...|.++.|+ |++. +++++.|+.|++||+++............
T Consensus 225 ~~~~~l~s~-s~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~---~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 298 (340)
T 4aow_A 225 PDGSLCASG-GKDGQAMLWDLNEGKHLYTLDG-GDIINALCFS---PNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVI 298 (340)
T ss_dssp TTSSEEEEE-ETTCEEEEEETTTTEEEEEEEC-SSCEEEEEEC---SSSS-EEEEEETTEEEEEETTTTEEEEEECCC--
T ss_pred CCCCEEEEE-eCCCeEEEEEeccCceeeeecC-CceEEeeecC---CCCc-eeeccCCCEEEEEECCCCeEEEeccccce
Confidence 999999853 33322 1223344445554 4579999999 7765 55566799999999998754433222233
Q ss_pred eeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 311 LIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 311 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.....+|...|++++|+| ++++|++|+.||.|+|||++
T Consensus 299 ~~~~~~h~~~v~~l~~s~-dg~~l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 299 STSSKAEPPQCTSLAWSA-DGQTLFAGYTDNLVRVWQVT 336 (340)
T ss_dssp -----CCCCCEEEEEECT-TSSEEEEEETTSCEEEEEEE
T ss_pred eeeccCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEeCC
Confidence 344567899999999988 88999999999999999974
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-43 Score=292.98 Aligned_cols=306 Identities=17% Similarity=0.124 Sum_probs=228.6
Q ss_pred CCCCeeeeCCceeeeEEEE-----ecCCCceEEEeCCCCcEEEEECCCC-------cEEEEeecCCCCeEEEEEecCCCE
Q 018858 5 EAKPRRLRGHKATATCCIA-----SRDRPGFVASSGEDGCICWFDLRSK-------DVQLVTDVGNGPVTSLCFKSGNED 72 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~-----~~~~~~~l~t~~~dg~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~ 72 (349)
.++.+.|++|.+.|++++| ++.++++|++|+.|++|++||+.+. .....+.+|...|.+++|+|++.+
T Consensus 11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~ 90 (343)
T 2xzm_R 11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF 90 (343)
T ss_dssp EEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTE
T ss_pred eeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCE
Confidence 3467789999999999999 6634899999999999999998753 346778899999999999999999
Q ss_pred EEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEecee-ccccccceeE
Q 018858 73 IIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSL-RAGHSSICSS 151 (349)
Q Consensus 73 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~v~~ 151 (349)
+++++.|+.|++||+++++ .+..+.+|...|.+++|+|++++|++++.|+.|++||+......... ...|...+.+
T Consensus 91 l~s~s~D~~v~lwd~~~~~---~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~ 167 (343)
T 2xzm_R 91 AISSSWDKTLRLWDLRTGT---TYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSC 167 (343)
T ss_dssp EEEEETTSEEEEEETTSSC---EEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEE
T ss_pred EEEEcCCCcEEEEECCCCc---EEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeee
Confidence 9999999999999999764 44556678899999999999999999999999999999854332222 1157788999
Q ss_pred EEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCcccee
Q 018858 152 VQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQ 231 (349)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 231 (349)
++|+|++.-. ..+.| .+.+|++++.||.|++||.+. ....... .....+..+
T Consensus 168 ~~~~~~~~~~--------------------~~~~~------~~~~l~s~~~d~~i~iwd~~~-~~~~~~~-~h~~~v~~~ 219 (343)
T 2xzm_R 168 VRYSPIMKSA--------------------NKVQP------FAPYFASVGWDGRLKVWNTNF-QIRYTFK-AHESNVNHL 219 (343)
T ss_dssp EEECCCCCSC--------------------SCCCS------SCCEEEEEETTSEEEEEETTT-EEEEEEE-CCSSCEEEE
T ss_pred eeeccccccc--------------------cccCC------CCCEEEEEcCCCEEEEEcCCC-ceeEEEc-CccccceEE
Confidence 9999942100 01112 457999999999999999543 3333222 345678999
Q ss_pred eeeccccEEEEeeeeeecCce-----eeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCccee--c
Q 018858 232 STSKVNIRDAEMEILDQSGGK-----RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ--T 304 (349)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~--~ 304 (349)
+|+|+|+++++. ..|+.+.. .......+ .+...|.+++|+ |++++++++ .|+.|++||+.+.+... .
T Consensus 220 ~~s~~g~~l~sg-s~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~s---p~~~~la~~-~d~~v~iw~~~~~~~~~~~~ 293 (343)
T 2xzm_R 220 SISPNGKYIATG-GKDKKLLIWDILNLTYPQREF-DAGSTINQIAFN---PKLQWVAVG-TDQGVKIFNLMTQSKAPVCT 293 (343)
T ss_dssp EECTTSSEEEEE-ETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEEC---SSSCEEEEE-ESSCEEEEESSSCCSCSEEE
T ss_pred EECCCCCEEEEE-cCCCeEEEEECCCCcccceee-cCCCcEEEEEEC---CCCCEEEEE-CCCCEEEEEeCCCCCCceEE
Confidence 999999999853 33322111 11111222 245579999999 888887655 57889999998764321 0
Q ss_pred cc--ccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 305 SI--NNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 305 ~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.. .........+|...|++++|+| ++++|++|+.||.|++|++
T Consensus 294 ~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~sg~~Dg~v~~w~~ 338 (343)
T 2xzm_R 294 IEAEPITKAEGQKGKNPQCTSLAWNA-LGKKLFAGFTDGVIRTFSF 338 (343)
T ss_dssp CCCCSGGGBTTBCCSCCCEEEEEECS-SSCCEEEEETTSEEEEEEE
T ss_pred eecCcchhhhhhcCCCCceEEEEECC-CCCeEEEecCCceEEEEEE
Confidence 00 0000111236888999999988 8889999999999999996
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-42 Score=308.41 Aligned_cols=313 Identities=19% Similarity=0.227 Sum_probs=255.0
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 85 (349)
++.++|+||++.|+|++|+|+ +++||+|+.|+.|+|||. +++++.++.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 7 ~e~~~L~GH~~~V~~~a~spd-g~~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vW 84 (577)
T 2ymu_A 7 KERNRLEAHSSSVRGVAFSPD-GQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 84 (577)
T ss_dssp CEEEEECCCSSCEEEEEECTT-SSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEeeEECCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 345789999999999999998 899999999999999995 678899999999999999999999999999999999999
Q ss_pred EccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCC
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPE 165 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 165 (349)
|+. + +.+..+.+|...|.+++|+|++++|++++.|+.+++|+...... .... .+...+..+.++|++..+....
T Consensus 85 d~~-~---~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~-~~~~-~~~~~v~~~~~~~~~~~~~~~~ 158 (577)
T 2ymu_A 85 NRN-G---QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL-QTLT-GHSSSVWGVAFSPDGQTIASAS 158 (577)
T ss_dssp ETT-S---CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEE-EEEC-CCSSCEEEEEECTTSSCEEEEE
T ss_pred ECC-C---CEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeeccccccee-eecc-CCCCceeeeeeecCCccceecc
Confidence 964 3 45566778889999999999999999999999999999765543 4455 6888999999999876552211
Q ss_pred CC-----------CCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeee
Q 018858 166 NN-----------GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTS 234 (349)
Q Consensus 166 ~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 234 (349)
.. ...........+..+++.| ++++|++++.||.|++||... +...... .....+.+++|+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~l~~~~~d~~v~~w~~~~-~~~~~~~-~~~~~v~~~~~s 230 (577)
T 2ymu_A 159 DDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP------DGQTIASASDDKTVKLWNRNG-QLLQTLT-GHSSSVRGVAFS 230 (577)
T ss_dssp TTSEEEEECTTSCEEEEEECCSSCEEEEEECT------TSSCEEEEETTSEEEEECTTS-CEEEEEE-CCSSCEEEEEEC
T ss_pred cccceeccccceeeeeeccCCCcceeeeeecC------CCCEEEEEcCCCEEEEEeCCC-cEEEEEe-cCCCCEEEEEEC
Confidence 11 1111122345677888888 899999999999999999754 3333322 235678899999
Q ss_pred ccccEEEEeeeeeecCc---eeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceeccccccee
Q 018858 235 KVNIRDAEMEILDQSGG---KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLL 311 (349)
Q Consensus 235 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~ 311 (349)
|+++++++.+ .++.+. ...+.+..+.+|...|++++|+ |++++|++++.|+.|++||... ..+
T Consensus 231 ~dg~~l~~~~-~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~---~d~~~l~~~~~d~~i~~w~~~~----------~~~ 296 (577)
T 2ymu_A 231 PDGQTIASAS-DDKTVKLWNRNGQLLQTLTGHSSSVNGVAFR---PDGQTIASASDDKTVKLWNRNG----------QLL 296 (577)
T ss_dssp TTSSCEEEEE-TTSCEEEECTTSCEEEEECCCSSCEEEEEEC---TTSSEEEEEETTSCEEEEETTS----------CEE
T ss_pred CCCCEEEEEe-CCCEEEEEeCCCCEEEEEecCCCCEEEEEEc---CCCCEEEEEeCCCEEEEEeCCC----------cEE
Confidence 9999988532 222211 1234566788899999999999 8999999999999999999765 566
Q ss_pred eeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 312 IKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 312 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
..+.+|...|.+++++| ++++|++++.|+.|++||+.
T Consensus 297 ~~~~~h~~~v~~~~~~~-~~~~l~t~~~d~~i~~w~~~ 333 (577)
T 2ymu_A 297 QTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRN 333 (577)
T ss_dssp EEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETT
T ss_pred EEEecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCC
Confidence 67789999999999988 88899999999999999963
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-43 Score=290.44 Aligned_cols=272 Identities=14% Similarity=0.141 Sum_probs=208.5
Q ss_pred eeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc--EEEEeecCCCCeEEEEEec--CCCEEEEEeCCCeEEE
Q 018858 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD--VQLVTDVGNGPVTSLCFKS--GNEDIIYVSSGKEVKS 84 (349)
Q Consensus 9 ~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i 84 (349)
..+.+|.+.|++++|+|+ +++|++|+.|++|++||+.+++ .+..+.+|..+|.+++|++ ++++|++++.|++|++
T Consensus 7 ~~~~~H~~~V~~v~~s~~-g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i 85 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYY-GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII 85 (316)
T ss_dssp -------CCEEEEEECGG-GCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred eecccccCeEEEeeEcCC-CCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence 456799999999999998 8999999999999999998765 4678899999999999986 4899999999999999
Q ss_pred EEccCCCcccceeeccCcccceEEEEEccC--CCEEEEEcCCCcEEEEEcCCce---EeceeccccccceeEEEEccCCC
Q 018858 85 FDVHMPASWRPLESYNYNKEEINQIVCNPK--SSFLACADDGGDVKIIDIRQHC---LYKSLRAGHSSICSSVQFIPWKP 159 (349)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~~ 159 (349)
||+++++ ......+.+|...|.+++|+|+ +.+|++|+.|+.|++||++.+. ....+. +|...+.+++|+|+..
T Consensus 86 Wd~~~~~-~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~ 163 (316)
T 3bg1_A 86 WREENGT-WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINN-AHTIGCNAVSWAPAVV 163 (316)
T ss_dssp ECCSSSC-CCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTT-SSSSCBCCCEECCCCC
T ss_pred EECCCCc-ceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeec-cccCCcceEEEccccC
Confidence 9998653 2344556778899999999997 7899999999999999998653 234555 7888999999999521
Q ss_pred CCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccE
Q 018858 160 WEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIR 239 (349)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (349)
-.. .. ..+.......+++|++|+.|+.|++||++..
T Consensus 164 ~~~----------~~---------~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~------------------------- 199 (316)
T 3bg1_A 164 PGS----------LI---------DHPSGQKPNYIKRFASGGCDNLIKLWKEEED------------------------- 199 (316)
T ss_dssp C-------------------------CCSCCCCCCCBEECCBTTSBCCEEEECTT-------------------------
T ss_pred Ccc----------cc---------ccccccCccccceEEEecCCCeEEEEEeCCC-------------------------
Confidence 000 00 0000000013578999999999999999742
Q ss_pred EEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCc----cEEEEeeCCCeEEEEecCCCcceecccccceeeecc
Q 018858 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERG----KYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI 315 (349)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~----~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 315 (349)
........+.+|...|++++|+ |++ ++|++++.|++|++|++....... .......
T Consensus 200 ------------~~~~~~~~l~~h~~~V~~v~~s---p~~~~~~~~las~s~D~~v~iw~~~~~~~~~-----~~~~~~~ 259 (316)
T 3bg1_A 200 ------------GQWKEEQKLEAHSDWVRDVAWA---PSIGLPTSTIASCSQDGRVFIWTCDDASSNT-----WSPKLLH 259 (316)
T ss_dssp ------------SCEEEEECCBCCSSCEEEEECC---CCSSCSCCEEEEEETTCEEEEEECSSTTCCC-----CBCCEEE
T ss_pred ------------CccceeeecccCCCceEEEEec---CCCCCCCceEEEEcCCCeEEEEEccCccccc-----hhhhhhh
Confidence 1113456778999999999999 665 899999999999999998632100 1122335
Q ss_pred ccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 316 NLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 316 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.|...|.+++|+| ++++|++++.|+.|++|+.
T Consensus 260 ~~~~~v~~v~~sp-~g~~las~~~D~~v~lw~~ 291 (316)
T 3bg1_A 260 KFNDVVWHVSWSI-TANILAVSGGDNKVTLWKE 291 (316)
T ss_dssp ECSSCEEEEEECT-TTCCEEEEESSSCEEEEEE
T ss_pred cCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEE
Confidence 6888999999988 8889999999999999985
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-41 Score=277.64 Aligned_cols=285 Identities=14% Similarity=0.195 Sum_probs=242.4
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK 83 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 83 (349)
..+.++.+++|.+.|++++| |+ +++|++++.||.|++||+.+++....+..|...|.+++|+|++++|++++.||.|+
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~-~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 84 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VD-DSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMIN 84 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EE-TTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred cHHHHHHhhCCCCCcEEEEe-cC-CCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEE
Confidence 34678899999999999999 87 78999999999999999999998899999999999999999999999999999999
Q ss_pred EEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCC
Q 018858 84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
+|++........+..+..|...+.+++| +++++++++.||.|++|| .++....+. .|...+.++.|.|.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~-~~~~~v~~~~~~~~------ 153 (313)
T 3odt_A 85 GVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQ-AHNASVWDAKVVSF------ 153 (313)
T ss_dssp EEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEE-CCSSCEEEEEEEET------
T ss_pred EEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecc-cCCCceeEEEEccC------
Confidence 9999876555666777888999999999 577999999999999999 667777787 89999999999883
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
+++++++++.||.|++||.. .............+..++|+|++. +++
T Consensus 154 -----------------------------~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~i~~~~~~~~~~-~~~- 200 (313)
T 3odt_A 154 -----------------------------SENKFLTASADKTIKLWQND--KVIKTFSGIHNDVVRHLAVVDDGH-FIS- 200 (313)
T ss_dssp -----------------------------TTTEEEEEETTSCEEEEETT--EEEEEECSSCSSCEEEEEEEETTE-EEE-
T ss_pred -----------------------------CCCEEEEEECCCCEEEEecC--ceEEEEeccCcccEEEEEEcCCCe-EEE-
Confidence 67899999999999999943 444455555678899999999999 442
Q ss_pred eeeeec----CceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecccccc
Q 018858 244 EILDQS----GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK 319 (349)
Q Consensus 244 ~~~~~~----~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 319 (349)
+..++. .....+.+..+.+|...|++++|+ |++ .|++++.||.|++||+.++ ..+..+..|..
T Consensus 201 ~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~---~~~-~l~~~~~dg~v~iwd~~~~---------~~~~~~~~~~~ 267 (313)
T 3odt_A 201 CSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLL---PNG-DIVSCGEDRTVRIWSKENG---------SLKQVITLPAI 267 (313)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC---TTS-CEEEEETTSEEEEECTTTC---------CEEEEEECSSS
T ss_pred ccCCCeEEEEECCchhhhhhhhcCCceEEEEEEe---cCC-CEEEEecCCEEEEEECCCC---------ceeEEEeccCc
Confidence 332222 222345667788899999999999 888 6889999999999999997 56667788999
Q ss_pred ceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 320 KVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 320 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.|.+++|+| +++ +++++.||.|++|+++
T Consensus 268 ~i~~~~~~~-~~~-~~~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 268 SIWSVDCMS-NGD-IIVGSSDNLVRIFSQE 295 (313)
T ss_dssp CEEEEEECT-TSC-EEEEETTSCEEEEESC
T ss_pred eEEEEEEcc-CCC-EEEEeCCCcEEEEeCC
Confidence 999999988 665 7789999999999974
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-42 Score=292.00 Aligned_cols=290 Identities=14% Similarity=0.095 Sum_probs=238.6
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc------EEEEeecCCCCeEEEEEecC----C---CE
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD------VQLVTDVGNGPVTSLCFKSG----N---ED 72 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~------~~~~~~~~~~~v~~~~~~~~----~---~~ 72 (349)
...+.+++|.+.|++++|+| ++|++|+.||.|++||+.+++ .+..+..|..+|.+++|+|+ + ++
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred hhhhhhhhhhcCeEEEEecC---CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence 45677889999999999987 599999999999999999887 68888899999999999999 9 99
Q ss_pred EEEEeCCCeEEEEEccCCCcc--cceeeccCc-----ccceEEEEEc----cCCCE-EEEEcCCCcEEEEEcCC------
Q 018858 73 IIYVSSGKEVKSFDVHMPASW--RPLESYNYN-----KEEINQIVCN----PKSSF-LACADDGGDVKIIDIRQ------ 134 (349)
Q Consensus 73 l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~-----~~~v~~~~~~----~~~~~-l~~~~~dg~i~i~d~~~------ 134 (349)
|++++.|+.|++||+.+++.. ..+..+..| ...|.+++|+ |++++ |++++.||.|++||+++
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 163 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN 163 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred EEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccc
Confidence 999999999999999876431 014445555 5889999999 99999 99999999999999998
Q ss_pred ceEec-----eec------cccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCC
Q 018858 135 HCLYK-----SLR------AGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD 203 (349)
Q Consensus 135 ~~~~~-----~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 203 (349)
++.+. .+. ..|...+.+++|+| ++ +|++++.|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------------------------------------~~-~l~~~~~d 206 (397)
T 1sq9_A 164 SLTLNWSPTLELQGTVESPMTPSQFATSVDISE------------------------------------RG-LIATGFNN 206 (397)
T ss_dssp HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT------------------------------------TS-EEEEECTT
T ss_pred cceeeccCcceeeeeeccccCCCCCceEEEECC------------------------------------Cc-eEEEEeCC
Confidence 66655 553 14778899999999 78 99999999
Q ss_pred CeEEEEEccCceeeeecCCC--C---CCccceeeeeccccEEEEeeeee---ec----CceeeeeeeeecC---------
Q 018858 204 GVVDVINIESELNISRSKST--T---KPLKGSQSTSKVNIRDAEMEILD---QS----GGKRLHLDYSVGG--------- 262 (349)
Q Consensus 204 g~i~i~d~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~~~--------- 262 (349)
|.|++||+++.+........ . ...+..++|+|+++++++.+ .+ +. .....+.+..+.+
T Consensus 207 g~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~-~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~ 285 (397)
T 1sq9_A 207 GTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAH-DSNSFGCITLYETEFGERIGSLSVPTHSSQASL 285 (397)
T ss_dssp SEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEE-EETTEEEEEEEETTTCCEEEEECBC--------
T ss_pred CcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEe-cCCCCceEEEEECCCCcccceeccCcccccccc
Confidence 99999999988776655541 3 67889999999999998533 33 22 2223455667777
Q ss_pred ----CCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecc------cc---------------
Q 018858 263 ----HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI------NL--------------- 317 (349)
Q Consensus 263 ----h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~------~~--------------- 317 (349)
|...|.++.|+ |++++|++++.|+.|++||+.++ ..+..+. .|
T Consensus 286 ~~~~~~~~v~~~~~~---~~~~~l~~~~~dg~i~iwd~~~~---------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 353 (397)
T 1sq9_A 286 GEFAHSSWVMSLSFN---DSGETLCSAGWDGKLRFWDVKTK---------ERITTLNMHCDDIEIEEDILAVDEHGDSLA 353 (397)
T ss_dssp CCBSBSSCEEEEEEC---SSSSEEEEEETTSEEEEEETTTT---------EEEEEEECCGGGCSSGGGCCCBCTTSCBCS
T ss_pred cccccCCcEEEEEEC---CCCCEEEEEeCCCeEEEEEcCCC---------ceeEEEecccCcccchhhhhcccccccccc
Confidence 99999999999 89999999999999999999987 4444444 56
Q ss_pred ccceEEEEeecCCC----------CcEEEeeCCCeEEEeeCC
Q 018858 318 NKKVNWLCTTPTES----------ENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 318 ~~~v~~~~~~~~~~----------~~l~~~~~dg~i~iw~~~ 349 (349)
...|++++|+| ++ ++|++++.||.|++|+++
T Consensus 354 ~~~v~~~~~~~-~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 354 EPGVFDVKFLK-KGWRSGMGADLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp SCCEEEEEEEC-TTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred CCceeEEEecc-ccccccccccccceEEEecCCCcEEEEEcC
Confidence 89999999998 65 699999999999999973
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-41 Score=284.91 Aligned_cols=286 Identities=11% Similarity=0.112 Sum_probs=236.6
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 85 (349)
.....|.+|.+.|++++|+|+ +++|++++.||.|++||+.+++.+..+..|...|.+++|+|++++|++++.||.|++|
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKE-GDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLW 101 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTT-SCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred cccEEEEEeeceEEEEEEcCC-CCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 345668999999999999998 8999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCC-----CcEEEEEcCCceEe-----------ceecccccc--
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDG-----GDVKIIDIRQHCLY-----------KSLRAGHSS-- 147 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~-----------~~~~~~~~~-- 147 (349)
|+++++....+. +...+.+++|+|+++++++++.+ +.|++||++..... ..+. .+..
T Consensus 102 d~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 176 (369)
T 3zwl_B 102 DVSNGQCVATWK----SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKII-THEGLD 176 (369)
T ss_dssp ETTTCCEEEEEE----CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEE-CCTTCC
T ss_pred ECCCCcEEEEee----cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeecc-CCcCcc
Confidence 999875443333 56789999999999999999998 99999999855322 2222 3333
Q ss_pred ceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC-ceeeeecCCCCCC
Q 018858 148 ICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES-ELNISRSKSTTKP 226 (349)
Q Consensus 148 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~ 226 (349)
.+.+++|+| ++++|++++.||.|++||+++ ....... .....
T Consensus 177 ~~~~~~~~~------------------------------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~ 219 (369)
T 3zwl_B 177 AATVAGWST------------------------------------KGKYIIAGHKDGKISKYDVSNNYEYVDSI-DLHEK 219 (369)
T ss_dssp CEEEEEECG------------------------------------GGCEEEEEETTSEEEEEETTTTTEEEEEE-ECCSS
T ss_pred ceeEEEEcC------------------------------------CCCEEEEEcCCCEEEEEECCCCcEeEEEE-ecCCC
Confidence 677788877 899999999999999999998 4443333 33457
Q ss_pred ccceeeeeccccEEEEeeeeee----cCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCC-------------
Q 018858 227 LKGSQSTSKVNIRDAEMEILDQ----SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDK------------- 289 (349)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~------------- 289 (349)
.+..++|+|+++++++.+ .++ +..........+. +...+..+.|+ |+++++++++.++
T Consensus 220 ~v~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~ 294 (369)
T 3zwl_B 220 SISDMQFSPDLTYFITSS-RDTNSFLVDVSTLQVLKKYE-TDCPLNTAVIT---PLKEFIILGGGQEAKDVTTTSANEGK 294 (369)
T ss_dssp CEEEEEECTTSSEEEEEE-TTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC---SSSSEEEEEECCC-------------
T ss_pred ceeEEEECCCCCEEEEec-CCceEEEEECCCCceeeeec-CCCCceeEEec---CCCceEEEeecCCCceEEEEecCCCc
Confidence 789999999999998632 222 1122233444444 67789999999 8999999999888
Q ss_pred -eEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 290 -LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 290 -~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.+++||+.++ ..+..+.+|...|++++|+| ++++|++++.||.|++|+++
T Consensus 295 ~~i~~~d~~~~---------~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 295 FEARFYHKIFE---------EEIGRVQGHFGPLNTVAISP-QGTSYASGGEDGFIRLHHFE 345 (369)
T ss_dssp CEEEEEETTTC---------CEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEEEC
T ss_pred ceeEEEecCCC---------cchhheecccCcEEEEEECC-CCCEEEEEcCCCeEEEEECc
Confidence 8999999987 66677788999999999988 88899999999999999974
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-41 Score=281.03 Aligned_cols=281 Identities=14% Similarity=0.168 Sum_probs=235.8
Q ss_pred eeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcE---EEEee--cCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 10 RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV---QLVTD--VGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 10 ~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~---~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
...+|...|++++|+|+ +++|++++ ||.|++||+.+++. +..+. .|...|.+++|+|++++|++++.|+.|++
T Consensus 46 ~~~~h~~~v~~~~~~~~-~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~ 123 (337)
T 1gxr_A 46 NTLNHGEVVCAVTISNP-TRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI 123 (337)
T ss_dssp EEECCSSCCCEEEECSS-SSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEE
T ss_pred eeccCCCceEEEEEecC-CcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEE
Confidence 34479999999999998 89999999 99999999987653 23333 68899999999999999999999999999
Q ss_pred EEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCC
Q 018858 85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLP 164 (349)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 164 (349)
||+++++. .....+..|...+.+++|+|+++++++++.||.|++||+++++.+..+. .|...+.+++|+|
T Consensus 124 ~d~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~-~~~~~i~~~~~~~-------- 193 (337)
T 1gxr_A 124 WDLAAPTP-RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ-GHTDGASCIDISN-------- 193 (337)
T ss_dssp EECCCC---EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECT--------
T ss_pred EECCCCCc-ceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeee-cccCceEEEEECC--------
Confidence 99987642 2344556677889999999999999999999999999999999999998 8999999999999
Q ss_pred CCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEee
Q 018858 165 ENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME 244 (349)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (349)
++++|++++.||.|++||+++++...... ....+..++|+|+++.+++..
T Consensus 194 ----------------------------~~~~l~~~~~dg~i~~~d~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~ 243 (337)
T 1gxr_A 194 ----------------------------DGTKLWTGGLDNTVRSWDLREGRQLQQHD--FTSQIFSLGYCPTGEWLAVGM 243 (337)
T ss_dssp ----------------------------TSSEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECTTSSEEEEEE
T ss_pred ----------------------------CCCEEEEEecCCcEEEEECCCCceEeeec--CCCceEEEEECCCCCEEEEEc
Confidence 78999999999999999999887666543 346788999999999998533
Q ss_pred eeeecC----ceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccc
Q 018858 245 ILDQSG----GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKK 320 (349)
Q Consensus 245 ~~~~~~----~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (349)
.++.+ ... .....+..|...|.++.|+ |++++|++++.||.|++||+.+++ .+ ....|...
T Consensus 244 -~~~~i~~~~~~~-~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~dg~i~~~~~~~~~---------~~-~~~~~~~~ 308 (337)
T 1gxr_A 244 -ESSNVEVLHVNK-PDKYQLHLHESCVLSLKFA---YCGKWFVSTGKDNLLNAWRTPYGA---------SI-FQSKESSS 308 (337)
T ss_dssp -TTSCEEEEETTS-SCEEEECCCSSCEEEEEEC---TTSSEEEEEETTSEEEEEETTTCC---------EE-EEEECSSC
T ss_pred -CCCcEEEEECCC-CCeEEEcCCccceeEEEEC---CCCCEEEEecCCCcEEEEECCCCe---------EE-EEecCCCc
Confidence 22211 111 1123567789999999999 899999999999999999999873 33 33468889
Q ss_pred eEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 321 VNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 321 v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
+.+++|+| ++++|++++.||.|++|++
T Consensus 309 v~~~~~s~-~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 309 VLSCDISV-DDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEEEECT-TSCEEEEEETTSCEEEEEE
T ss_pred EEEEEECC-CCCEEEEecCCCeEEEEEE
Confidence 99999988 7889999999999999996
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-41 Score=284.19 Aligned_cols=295 Identities=10% Similarity=0.050 Sum_probs=235.4
Q ss_pred eeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc--EEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEc
Q 018858 10 RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD--VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDV 87 (349)
Q Consensus 10 ~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 87 (349)
.+..|.++|++++|+|+ +++|++++.|+.|++||+.+++ .+..+..|...|.+++|+|++++|++++.||.|++||+
T Consensus 3 ~~~~~~~~i~~~~~s~~-~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 81 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKD-RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL 81 (372)
T ss_dssp EEESCSSCCCEEEECTT-SSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred eecccCCCeEEEEECCC-CCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEEC
Confidence 45679999999999998 8999999999999999999887 78889999999999999999999999999999999999
Q ss_pred cCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCce---EeceeccccccceeEEEEccCCCCCCCC
Q 018858 88 HMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC---LYKSLRAGHSSICSSVQFIPWKPWEGLP 164 (349)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 164 (349)
++++.. ....+..|...+.+++|+|++++|++++.|+.|++||++.++ ....+...|...|.+++|+|
T Consensus 82 ~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------- 152 (372)
T 1k8k_C 82 KGRTWK-PTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-------- 152 (372)
T ss_dssp ETTEEE-EEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT--------
T ss_pred CCCeee-eeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcC--------
Confidence 875422 223345577899999999999999999999999999998765 23333226788999999999
Q ss_pred CCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEcc------------------CceeeeecCCCCCC
Q 018858 165 ENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE------------------SELNISRSKSTTKP 226 (349)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~------------------~~~~~~~~~~~~~~ 226 (349)
++++|++++.||.|++||++ .++...... ....
T Consensus 153 ----------------------------~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 203 (372)
T 1k8k_C 153 ----------------------------NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-SSCG 203 (372)
T ss_dssp ----------------------------TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-CCSS
T ss_pred ----------------------------CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecC-CCCC
Confidence 78999999999999999964 333333333 3456
Q ss_pred ccceeeeeccccEEEEeeeeee----cCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCC--Cc
Q 018858 227 LKGSQSTSKVNIRDAEMEILDQ----SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR--FQ 300 (349)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~--~~ 300 (349)
.+..++|+|+++++++.+ .++ +.....+.+..+..|...|.+++|+ |++++++++ .|+.|++|++.. +.
T Consensus 204 ~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~-~d~~i~i~~~~~~~~~ 278 (372)
T 1k8k_C 204 WVHGVCFSANGSRVAWVS-HDSTVCLADADKKMAVATLASETLPLLAVTFI---TESSLVAAG-HDCFPVLFTYDSAAGK 278 (372)
T ss_dssp CEEEEEECSSSSEEEEEE-TTTEEEEEEGGGTTEEEEEECSSCCEEEEEEE---ETTEEEEEE-TTSSCEEEEEETTTTE
T ss_pred eEEEEEECCCCCEEEEEe-CCCEEEEEECCCCceeEEEccCCCCeEEEEEe---cCCCEEEEE-eCCeEEEEEccCcCce
Confidence 789999999999988633 222 2222345667778899999999999 899988887 899999999988 31
Q ss_pred ce--ec---------------------ccccce-------eeeccccccceEEEEeecCCC---CcEEEeeCCCeEEEee
Q 018858 301 GV--QT---------------------SINNDL-------LIKNINLNKKVNWLCTTPTES---ENLVVCDTSKVVKVYS 347 (349)
Q Consensus 301 ~~--~~---------------------~~~~~~-------~~~~~~~~~~v~~~~~~~~~~---~~l~~~~~dg~i~iw~ 347 (349)
-. .. ...... .....+|...|++++|++.++ .+|++++.||.|++|+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~ 358 (372)
T 1k8k_C 279 LSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 358 (372)
T ss_dssp EEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred EEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence 00 00 000011 222348999999999988787 8999999999999999
Q ss_pred C
Q 018858 348 I 348 (349)
Q Consensus 348 ~ 348 (349)
+
T Consensus 359 ~ 359 (372)
T 1k8k_C 359 V 359 (372)
T ss_dssp H
T ss_pred e
Confidence 6
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=293.67 Aligned_cols=296 Identities=9% Similarity=0.019 Sum_probs=225.3
Q ss_pred CeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC--cEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 018858 8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK--DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 8 ~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 85 (349)
...++.|.++|++++|+|+ +++|++|+.|+.|++||+.++ +.+..+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 4 ~~~~~~~~~~v~~~~~s~~-g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vw 82 (377)
T 3dwl_C 4 SQVLHILPKPSYEHAFNSQ-RTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVY 82 (377)
T ss_dssp EEEEEECSSCCSCCEECSS-SSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC
T ss_pred ceeEecCCCcEEEEEECCC-CCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 3455667889999999998 899999999999999999988 6777888999999999999999999999999999999
Q ss_pred EccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCce---Eeceeccc-cccceeEEEEccCCCCC
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC---LYKSLRAG-HSSICSSVQFIPWKPWE 161 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~-~~~~v~~~~~~~~~~~~ 161 (349)
|+.+++.......+..|...|.+++|+|++++|++++.|+.|++||+++++ ....+. . |...|.+++|+|
T Consensus 83 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~h~~~v~~~~~~~----- 156 (377)
T 3dwl_C 83 EKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLK-RPLRSTILSLDWHP----- 156 (377)
T ss_dssp ------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEEC-SSCCSCEEEEEECT-----
T ss_pred EcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEee-cccCCCeEEEEEcC-----
Confidence 999765334555667788999999999999999999999999999999876 356676 5 899999999999
Q ss_pred CCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC------------------ceeeeecCCC
Q 018858 162 GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES------------------ELNISRSKST 223 (349)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~------------------~~~~~~~~~~ 223 (349)
++++|++++.||.|++||++. ++..... .
T Consensus 157 -------------------------------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 203 (377)
T 3dwl_C 157 -------------------------------NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--P 203 (377)
T ss_dssp -------------------------------TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--C
T ss_pred -------------------------------CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc--c
Confidence 789999999999999999952 2233333 5
Q ss_pred CCCccceeeeeccccEEEEeeeeeecCc----eee----eeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEe
Q 018858 224 TKPLKGSQSTSKVNIRDAEMEILDQSGG----KRL----HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD 295 (349)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~----~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd 295 (349)
....+.+++|+|+++++++. ..++.+. ... ..+..+.+|...|.+++|+ |++++|++++.|+.+ +|+
T Consensus 204 ~~~~v~~~~~sp~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s---~~~~~l~~~~~~~~~-~~~ 278 (377)
T 3dwl_C 204 SGGWVHAVGFSPSGNALAYA-GHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWA---NESAIVAAGYNYSPI-LLQ 278 (377)
T ss_dssp CSSSEEEEEECTTSSCEEEE-ETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEE---ETTEEEEEESSSSEE-EEC
T ss_pred CCceEEEEEECCCCCEEEEE-eCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEc---CCCCEEEEEcCCcEE-EEE
Confidence 56778999999999988853 3332211 111 2267788899999999999 899999999877666 666
Q ss_pred cCCCc-cee-ccc-----cc------------------------------------ceeeeccccccceEEEEeecCCCC
Q 018858 296 CSRFQ-GVQ-TSI-----NN------------------------------------DLLIKNINLNKKVNWLCTTPTESE 332 (349)
Q Consensus 296 ~~~~~-~~~-~~~-----~~------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~ 332 (349)
..... ... ... .. ........|.+.|+++++.+.++.
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~ 358 (377)
T 3dwl_C 279 GNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPG 358 (377)
T ss_dssp CCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETT
T ss_pred eCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCC
Confidence 65221 000 000 00 000112249999999998775554
Q ss_pred ---cEEEeeCCCeEEEeeC
Q 018858 333 ---NLVVCDTSKVVKVYSI 348 (349)
Q Consensus 333 ---~l~~~~~dg~i~iw~~ 348 (349)
.|+|++.||.|++||+
T Consensus 359 ~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 359 NITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp EEEEEEEEETTSEEEEECC
T ss_pred ceEEEEeecCCCcEEEecC
Confidence 6999999999999996
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-41 Score=286.31 Aligned_cols=287 Identities=9% Similarity=0.040 Sum_probs=227.0
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEee--cCCCCeEEEEEec-CCCEEEEEeCCCe
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD--VGNGPVTSLCFKS-GNEDIIYVSSGKE 81 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~~~~~dg~ 81 (349)
.+..+.+.+|.+.|++++|+|++.++|++|+.||.|++||+.+++....+. +|...|.+++|+| ++++|++++.|+.
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~ 142 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGA 142 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTE
T ss_pred cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCE
Confidence 456778899999999999999833899999999999999999888776665 6999999999999 7899999999999
Q ss_pred EEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCC
Q 018858 82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE 161 (349)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 161 (349)
|++||++. .....+.....+...+.+++|+|++++|++++.|+.|++||+ +++.+..+. .|...|.+++|+|
T Consensus 143 i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~-~h~~~v~~~~~~~----- 214 (383)
T 3ei3_B 143 TTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEK-LHKAKVTHAEFNP----- 214 (383)
T ss_dssp EEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEE-CSSSCEEEEEECS-----
T ss_pred EEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEec-cCCCcEEEEEECC-----
Confidence 99999985 334444444455678999999999999999999999999999 566778888 8999999999999
Q ss_pred CCCCCCCCCccccCCceeEEeecCcccccCCCCc-EEEEEcCCCeEEEEEccC----ceeeeecCCCCCCccceeeeec-
Q 018858 162 GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK-ICVVAKGDGVVDVINIES----ELNISRSKSTTKPLKGSQSTSK- 235 (349)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~~~~~~~~~~- 235 (349)
+++ +|++++.|+.|++||+++ ....... .....+.+++|+|
T Consensus 215 -------------------------------~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~ 261 (383)
T 3ei3_B 215 -------------------------------RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM--PHEKPVNAAYFNPT 261 (383)
T ss_dssp -------------------------------SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE--ECSSCEEEEEECTT
T ss_pred -------------------------------CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe--cCCCceEEEEEcCC
Confidence 676 899999999999999997 4444433 3567899999999
Q ss_pred cccEEEEeeeeeecC----ceeeeeeeeecC-------CC----------cceEEEEEeeecCCccEEEEeeCCCeEEEE
Q 018858 236 VNIRDAEMEILDQSG----GKRLHLDYSVGG-------HT----------AAASCVAFSMFGERGKYLISGGNDKLVKVW 294 (349)
Q Consensus 236 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~-------h~----------~~i~~i~~~~~~~~~~~l~s~~~d~~i~vw 294 (349)
+++++++.+ .++.+ .........+.+ |. ..+..+.++ |++++ +++.|+.|++|
T Consensus 262 ~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s---~dg~~--s~s~d~~i~iw 335 (383)
T 3ei3_B 262 DSTKLLTTD-QRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRY---PDDQL--LLNDKRTIDIY 335 (383)
T ss_dssp TSCEEEEEE-SSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECB---CCTTT--CTTCCCCEEEE
T ss_pred CCCEEEEEc-CCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEec---CCccc--ccCCCCeEEEE
Confidence 999998533 22211 111112222222 22 234446666 67666 77899999999
Q ss_pred ecCCCcceecccccceeeeccc--cccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 295 DCSRFQGVQTSINNDLLIKNIN--LNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 295 d~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
|+.++ ..+..+.+ |...+..++|+| ++++|++++ ||.|++||++
T Consensus 336 d~~~~---------~~~~~l~~~~~~~~~~~~~~s~-~g~~l~s~s-d~~i~iw~~~ 381 (383)
T 3ei3_B 336 DANSG---------GLVHQLRDPNAAGIISLNKFSP-TGDVLASGM-GFNILIWNRE 381 (383)
T ss_dssp ETTTC---------CEEEEECBTTBCSCCCEEEECT-TSSEEEEEE-TTEEEEEECC
T ss_pred ecCCC---------ceeeeecCCCCCceEEEEEEec-CccEEEEec-CCcEEEEecC
Confidence 99987 45555555 566777889988 888999997 9999999984
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-41 Score=281.11 Aligned_cols=300 Identities=16% Similarity=0.169 Sum_probs=230.6
Q ss_pred CeeeeCCceeeeEEEEecCCCceEEEeCC---CCcEEEEECCCCcEEEEe-ecCCCCeEEEEEecC---CCEEEEEeCCC
Q 018858 8 PRRLRGHKATATCCIASRDRPGFVASSGE---DGCICWFDLRSKDVQLVT-DVGNGPVTSLCFKSG---NEDIIYVSSGK 80 (349)
Q Consensus 8 ~~~l~~h~~~i~~~~~~~~~~~~l~t~~~---dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~---~~~l~~~~~dg 80 (349)
.+.+++|.+.|++++|+|++..++++|+. ||.|++||+.+++..... ..|..+|.+++|+|+ +++|++++.||
T Consensus 11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 90 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG 90 (357)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence 34457899999999999984456677776 999999999988865443 368999999999998 69999999999
Q ss_pred eEEEEEccCCCcccceeeccCcccceEEEE------EccCCCEEEEEcCCCcEEEEEcCCce-Eeceecccccc----ce
Q 018858 81 EVKSFDVHMPASWRPLESYNYNKEEINQIV------CNPKSSFLACADDGGDVKIIDIRQHC-LYKSLRAGHSS----IC 149 (349)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~------~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~----~v 149 (349)
.|++||+.+++ ..+..+..|...|.+++ |+|++++|++++.||.|++||+++++ .+..+. .+.. .+
T Consensus 91 ~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~~v 167 (357)
T 3i2n_A 91 NLHIWNLEAPE--MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANME-PVQGENKRDC 167 (357)
T ss_dssp CEEEECTTSCS--SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEEC-CCTTSCCCCE
T ss_pred eEEEEeCCCCC--ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceecc-ccCCCCCCce
Confidence 99999999764 24556677889999995 46789999999999999999999876 566665 3333 78
Q ss_pred eEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccc
Q 018858 150 SSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKG 229 (349)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 229 (349)
.+++|.+ ++++ ++++|++++.||.|++||+++++..... .....+.
T Consensus 168 ~~~~~~~--------------------------~~~~------~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~v~ 213 (357)
T 3i2n_A 168 WTVAFGN--------------------------AYNQ------EERVVCAGYDNGDIKLFDLRNMALRWET--NIKNGVC 213 (357)
T ss_dssp EEEEEEC--------------------------CCC-------CCCEEEEEETTSEEEEEETTTTEEEEEE--ECSSCEE
T ss_pred EEEEEEe--------------------------ccCC------CCCEEEEEccCCeEEEEECccCceeeec--CCCCceE
Confidence 8888432 1111 7899999999999999999988764442 2356789
Q ss_pred eeeeec---cccEEEEeeeeeecC----ceeeeeee-----eecCCCcceEEEEEeeecCCcc-EEEEeeCCCeEEEEec
Q 018858 230 SQSTSK---VNIRDAEMEILDQSG----GKRLHLDY-----SVGGHTAAASCVAFSMFGERGK-YLISGGNDKLVKVWDC 296 (349)
Q Consensus 230 ~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~-----~~~~h~~~i~~i~~~~~~~~~~-~l~s~~~d~~i~vwd~ 296 (349)
.++|+| ++..+++. ..++.+ ........ .+.+|...|++++|+ |+++ +|++++.||.|++||+
T Consensus 214 ~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~l~~~~~dg~i~iwd~ 289 (357)
T 3i2n_A 214 SLEFDRKDISMNKLVAT-SLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHL---PQNRELFLTAGGAGGLHLWKY 289 (357)
T ss_dssp EEEESCSSSSCCEEEEE-ESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEE---TTEEEEEEEEETTSEEEEEEE
T ss_pred EEEcCCCCCCCCEEEEE-CCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEEC---CCCCcEEEEEeCCCcEEEeec
Confidence 999999 88988853 222221 11222222 234899999999999 8888 8999999999999999
Q ss_pred CCCcceecc----------cccceeeeccccccceEEEEeecCCCCcEE-EeeCCCeEEEeeCC
Q 018858 297 SRFQGVQTS----------INNDLLIKNINLNKKVNWLCTTPTESENLV-VCDTSKVVKVYSIS 349 (349)
Q Consensus 297 ~~~~~~~~~----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~i~iw~~~ 349 (349)
+........ .....+..+.+|...|++++|+| ++++|+ +++.||.|++|++.
T Consensus 290 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 290 EYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSP-DKRGLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp ECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECS-SSTTEEEEEETTSEEEEEEEC
T ss_pred CCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcC-CCCeEEEEecCCCcEEEEECC
Confidence 875432110 01135667778999999999988 777888 79999999999974
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-41 Score=285.15 Aligned_cols=274 Identities=16% Similarity=0.189 Sum_probs=219.9
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECC--CCcEEEEeecCCCCeEEEEEecC--CCEEEEEeCCC
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLR--SKDVQLVTDVGNGPVTSLCFKSG--NEDIIYVSSGK 80 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg 80 (349)
+++++.+++|.+.|++++|+|+ +++|++|+.||.|++||+. +++.+..+.+|..+|.+++|+++ +++|++++.||
T Consensus 1 G~~~~~~~~h~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg 79 (379)
T 3jrp_A 1 GSMVVIANAHNELIHDAVLDYY-GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 79 (379)
T ss_dssp ----CCEEECCCCEEEEEECSS-SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred CCccEEecCCcccEEEEEEcCC-CCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCC
Confidence 4577899999999999999998 8999999999999999998 55667888999999999999977 99999999999
Q ss_pred eEEEEEccCCCcccceeeccCcccceEEEEEccC--CCEEEEEcCCCcEEEEEcCCce--EeceeccccccceeEEEEcc
Q 018858 81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK--SSFLACADDGGDVKIIDIRQHC--LYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~ 156 (349)
.|++||+++++ ...+..+..|...|.+++|+|+ +.+|++++.|+.|++||++++. ....+. .|...|.+++|+|
T Consensus 80 ~v~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~~v~~~~~~~ 157 (379)
T 3jrp_A 80 KVLIWKEENGR-WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVNSASWAP 157 (379)
T ss_dssp CEEEEEEETTE-EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEE-CCTTCEEEEEECC
T ss_pred EEEEEEcCCCc-eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEec-CCCCceEEEEEcC
Confidence 99999999753 2345566678899999999999 8999999999999999999763 333455 7888999999998
Q ss_pred CCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeecc
Q 018858 157 WKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKV 236 (349)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (349)
...... .... ..+++.+|++++.||.|++||++...
T Consensus 158 ~~~~~~-----------------~~~~------~~~~~~~l~~~~~dg~i~i~d~~~~~--------------------- 193 (379)
T 3jrp_A 158 ATIEED-----------------GEHN------GTKESRKFVTGGADNLVKIWKYNSDA--------------------- 193 (379)
T ss_dssp CC---------------------------------CTTCEEEEEETTSCEEEEEEETTT---------------------
T ss_pred cccccc-----------------cccc------CCCCCCEEEEEeCCCeEEEEEecCCC---------------------
Confidence 310000 0000 01147899999999999999998631
Q ss_pred ccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCC---ccEEEEeeCCCeEEEEecCCCcceecccccceeee
Q 018858 237 NIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGER---GKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIK 313 (349)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~---~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 313 (349)
........+.+|...|.+++|+ |+ +++|++++.||.|++||+.+...... ..+..
T Consensus 194 ---------------~~~~~~~~~~~h~~~v~~~~~s---p~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~ 251 (379)
T 3jrp_A 194 ---------------QTYVLESTLEGHSDWVRDVAWS---PTVLLRSYLASVSQDRTCIIWTQDNEQGPWK----KTLLK 251 (379)
T ss_dssp ---------------TEEEEEEEECCCSSCEEEEEEC---CCCSSSEEEEEEETTSCEEEEEESSTTSCCE----EEESS
T ss_pred ---------------cceeeEEEEecccCcEeEEEEC---CCCCCCCeEEEEeCCCEEEEEeCCCCCccce----eeeec
Confidence 1224556778899999999999 88 89999999999999999998632110 22333
Q ss_pred ccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 314 NINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 314 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
...|...|++++|+| ++++|++++.||.|++|++
T Consensus 252 ~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~iw~~ 285 (379)
T 3jrp_A 252 EEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWKE 285 (379)
T ss_dssp SSCCSSCEEEEEECS-SSCCEEEEESSSSEEEEEE
T ss_pred cccCCCcEEEEEEcC-CCCEEEEecCCCcEEEEeC
Confidence 445888999999988 8889999999999999996
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-41 Score=280.48 Aligned_cols=281 Identities=9% Similarity=0.083 Sum_probs=213.8
Q ss_pred CceeeeEEEEecCCCceEEEeCCCC-------cEEEEECCCCcE----------EEEeecCCCCeEEEEEecCCCEEEEE
Q 018858 14 HKATATCCIASRDRPGFVASSGEDG-------CICWFDLRSKDV----------QLVTDVGNGPVTSLCFKSGNEDIIYV 76 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~dg-------~i~vwd~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~ 76 (349)
-.-||+|++|+|+ +++|++|+.+. .|++|++..... ...+..|...|.+++++ ++.++++
T Consensus 13 ~g~PV~sv~fs~d-g~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g 89 (365)
T 4h5i_A 13 VGYPAYGAKFLNN-DTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVG 89 (365)
T ss_dssp CSSCEEEEEEEET-TEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEE
T ss_pred CCCCEEEEEEeCC-CcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEE
Confidence 3468999999998 89999987543 599999875431 12456778888887665 5567665
Q ss_pred e-----------CCCeEEEEEccCCCcc-cceee-----ccCcccceEEEEEccCCCEEEE--EcCCCcEEEEEcCCceE
Q 018858 77 S-----------SGKEVKSFDVHMPASW-RPLES-----YNYNKEEINQIVCNPKSSFLAC--ADDGGDVKIIDIRQHCL 137 (349)
Q Consensus 77 ~-----------~dg~i~iwd~~~~~~~-~~~~~-----~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~ 137 (349)
. .|+.+++|++...... ..... ...+...+.+++|+|||+++++ ++.|+.|++||++++++
T Consensus 90 ~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~ 169 (365)
T 4h5i_A 90 CNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTE 169 (365)
T ss_dssp CCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEE
T ss_pred ECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcE
Confidence 4 4678999998764321 11111 1223456889999999998765 44789999999999999
Q ss_pred eceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceee
Q 018858 138 YKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI 217 (349)
Q Consensus 138 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 217 (349)
+..+. |...|.+++|+| +++++++++.++ +.+|+..++...
T Consensus 170 ~~~~~--~~~~V~~v~fsp------------------------------------dg~~l~s~s~~~-~~~~~~~~~~~~ 210 (365)
T 4h5i_A 170 KFEIE--TRGEVKDLHFST------------------------------------DGKVVAYITGSS-LEVISTVTGSCI 210 (365)
T ss_dssp EEEEE--CSSCCCEEEECT------------------------------------TSSEEEEECSSC-EEEEETTTCCEE
T ss_pred EEEeC--CCCceEEEEEcc------------------------------------CCceEEecccee-EEEEEeccCcce
Confidence 88887 777899999999 899999998655 566666655544
Q ss_pred e-ecCCCCCCccceeeeeccccEEEEeeeee----------ecCc-eeeeeeeeecCCCcceEEEEEeeecCCccEEEEe
Q 018858 218 S-RSKSTTKPLKGSQSTSKVNIRDAEMEILD----------QSGG-KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISG 285 (349)
Q Consensus 218 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~-~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~ 285 (349)
. .........+..++|+|+++.+++..... .... ........+.+|...|++++|+ |+|++||+|
T Consensus 211 ~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~S---pdg~~lasg 287 (365)
T 4h5i_A 211 ARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVD---MKGELAVLA 287 (365)
T ss_dssp EEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEEC---TTSCEEEEE
T ss_pred eeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEEC---CCCCceEEE
Confidence 3 44445567789999999999998643211 1111 1222345677899999999999 999999999
Q ss_pred eCCCeEEEEecCCCcceecccccceeee-ccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 286 GNDKLVKVWDCSRFQGVQTSINNDLLIK-NINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 286 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
+.|+.|+|||++++ +++.. ..+|...|++++|+| |+++|++++.|++|+||+++
T Consensus 288 s~D~~V~iwd~~~~---------~~~~~~~~gH~~~V~~v~fSp-dg~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 288 SNDNSIALVKLKDL---------SMSKIFKQAHSFAITEVTISP-DSTYVASVSAANTIHIIKLP 342 (365)
T ss_dssp ETTSCEEEEETTTT---------EEEEEETTSSSSCEEEEEECT-TSCEEEEEETTSEEEEEECC
T ss_pred cCCCEEEEEECCCC---------cEEEEecCcccCCEEEEEECC-CCCEEEEEeCCCeEEEEEcC
Confidence 99999999999997 55554 578999999999988 89999999999999999985
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-41 Score=286.46 Aligned_cols=324 Identities=12% Similarity=0.045 Sum_probs=247.0
Q ss_pred CCeeeeC--CceeeeEEEEecCCCc-eEEEeCCCCcEEEEEC----CCCc------EEEEeec----------CCCCeEE
Q 018858 7 KPRRLRG--HKATATCCIASRDRPG-FVASSGEDGCICWFDL----RSKD------VQLVTDV----------GNGPVTS 63 (349)
Q Consensus 7 ~~~~l~~--h~~~i~~~~~~~~~~~-~l~t~~~dg~i~vwd~----~~~~------~~~~~~~----------~~~~v~~ 63 (349)
..+.+.. |.+.|++++|+|+ ++ +|++|+.||.|++||+ .+++ ....+.. |...|.+
T Consensus 35 ~~~~~~~~~~~~~v~~~~~s~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (425)
T 1r5m_A 35 FVKILKEIVKLDNIVSSTWNPL-DESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTC 113 (425)
T ss_dssp CCEECEEEEECSCCSEEEECSS-CTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEE
T ss_pred hhhheeeeeccCceEEEEECCC-CCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEE
Confidence 3444554 5589999999999 77 9999999999999999 8887 4555554 6779999
Q ss_pred EEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceecc
Q 018858 64 LCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA 143 (349)
Q Consensus 64 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 143 (349)
++|+|++++|++++.||.|++||. ++ ..+..+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+.
T Consensus 114 ~~~s~~~~~l~~~~~dg~i~i~~~-~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~- 188 (425)
T 1r5m_A 114 LAWSHDGNSIVTGVENGELRLWNK-TG---ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFE- 188 (425)
T ss_dssp EEECTTSSEEEEEETTSCEEEEET-TS---CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEEC-
T ss_pred EEEcCCCCEEEEEeCCCeEEEEeC-CC---CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEee-
Confidence 999999999999999999999993 33 4455667788999999999999999999999999999999999888887
Q ss_pred ccccc---------------eeEEEEccCCCCCC-CCCCC----------CCCccccCCceeEEeecCcccccCCCCcEE
Q 018858 144 GHSSI---------------CSSVQFIPWKPWEG-LPENN----------GNAGQCYNPAFVHAIAIPDADMLDKTNKIC 197 (349)
Q Consensus 144 ~~~~~---------------v~~~~~~~~~~~~~-~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 197 (349)
.+... +.+++|+|++.+.. ..++. ...........+.+++++| ++++|
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~------~~~~l 262 (425)
T 1r5m_A 189 LKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND------TNKLL 262 (425)
T ss_dssp CC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEET------TTTEE
T ss_pred ccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECC------CCCEE
Confidence 66655 89999999765431 11111 0111112346788999988 89999
Q ss_pred EEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeec----CceeeeeeeeecCCCcceEEEEEe
Q 018858 198 VVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS----GGKRLHLDYSVGGHTAAASCVAFS 273 (349)
Q Consensus 198 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~h~~~i~~i~~~ 273 (349)
++++.||.|++||+++.+....... ....+..++|+|++ .+++ +..++. .......+..+..|...|.++.|+
T Consensus 263 ~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~-~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s 339 (425)
T 1r5m_A 263 LSASDDGTLRIWHGGNGNSQNCFYG-HSQSIVSASWVGDD-KVIS-CSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRIS 339 (425)
T ss_dssp EEEETTSCEEEECSSSBSCSEEECC-CSSCEEEEEEETTT-EEEE-EETTSEEEEEETTTTEEEEEEECTTCCEEEEEEC
T ss_pred EEEcCCCEEEEEECCCCccceEecC-CCccEEEEEECCCC-EEEE-EeCCCcEEEEECCCCcEeEecccCCccEEEEEEc
Confidence 9999999999999998765555432 45678999999999 5553 332222 122345566777889999999999
Q ss_pred eecCCccEEEEeeCCCeEEEEecCCCcceec-----------ccccceeeecccccc--ceEEEEeecCCCCcEEEeeCC
Q 018858 274 MFGERGKYLISGGNDKLVKVWDCSRFQGVQT-----------SINNDLLIKNINLNK--KVNWLCTTPTESENLVVCDTS 340 (349)
Q Consensus 274 ~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~-----------~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~d 340 (349)
|++++|++++.||.|++||+.+...... ......+..+..|.. .|++++|+| ++++|++++.|
T Consensus 340 ---~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d 415 (425)
T 1r5m_A 340 ---QDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNC-AGNKISVAYSL 415 (425)
T ss_dssp ---TTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECT-TSSEEEEEESS
T ss_pred ---CCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccC-CCceEEEEecC
Confidence 8999999999999999999987631000 000126677778866 999999988 88899999999
Q ss_pred CeEEEeeCC
Q 018858 341 KVVKVYSIS 349 (349)
Q Consensus 341 g~i~iw~~~ 349 (349)
|.|++|+++
T Consensus 416 g~i~iw~~~ 424 (425)
T 1r5m_A 416 QEGSVVAIP 424 (425)
T ss_dssp SCCEEEECC
T ss_pred ceEEEEeec
Confidence 999999985
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-40 Score=299.67 Aligned_cols=298 Identities=16% Similarity=0.133 Sum_probs=229.0
Q ss_pred CCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC-----cEEEEeecCCCCeEEEEEecCCCEEEEEeCCCe
Q 018858 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK-----DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKE 81 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 81 (349)
....|++|.+.|++++|+|+++++|+||+.|++|++||+.+. .....+.+|...|.+++|+|++++|++|+.|+.
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~ 453 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE 453 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCc
Confidence 445789999999999999986789999999999999998753 345678899999999999999999999999999
Q ss_pred EEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceec--cccccceeEEEEccCCC
Q 018858 82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR--AGHSSICSSVQFIPWKP 159 (349)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~ 159 (349)
|++||+.++ ..+..+.+|...|.+++|+|++++|++++.|+.|++||+.......... .+|...|.+++|+|++
T Consensus 454 v~vwd~~~~---~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~- 529 (694)
T 3dm0_A 454 LRLWDLAAG---VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT- 529 (694)
T ss_dssp EEEEETTTT---EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCS-
T ss_pred EEEEECCCC---cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCC-
Confidence 999999876 3445567788999999999999999999999999999987654332221 1678889999999931
Q ss_pred CCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccE
Q 018858 160 WEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIR 239 (349)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (349)
....|++++.|+.|++||+++.+....... +...+.+++|+|++++
T Consensus 530 ---------------------------------~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~-h~~~v~~v~~spdg~~ 575 (694)
T 3dm0_A 530 ---------------------------------LQPTIVSASWDKTVKVWNLSNCKLRSTLAG-HTGYVSTVAVSPDGSL 575 (694)
T ss_dssp ---------------------------------SSCEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSE
T ss_pred ---------------------------------CcceEEEEeCCCeEEEEECCCCcEEEEEcC-CCCCEEEEEEeCCCCE
Confidence 236899999999999999998776655443 3567899999999999
Q ss_pred EEEeeeeeecCc----eeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceeccccccee----
Q 018858 240 DAEMEILDQSGG----KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLL---- 311 (349)
Q Consensus 240 ~~~~~~~~~~~~----~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~---- 311 (349)
+++ ++.|+.+. .....+..+. +...|.+++|+ |++.++++++ |+.|++||++++............
T Consensus 576 l~s-g~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s---p~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~ 649 (694)
T 3dm0_A 576 CAS-GGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCFS---PNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEK 649 (694)
T ss_dssp EEE-EETTSBCEEEETTTTEEEECCB-CSSCEEEEEEC---SSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC-----
T ss_pred EEE-EeCCCeEEEEECCCCceEEEec-CCCcEEEEEEc---CCCcEEEEEc-CCCEEEEECCCCCChhhhcccccccccc
Confidence 985 33333322 1233444444 34679999999 8888887765 567999999987433211000000
Q ss_pred ------eeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 312 ------IKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 312 ------~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.....+...+++++|+| ++++|++++.||.|++|++.
T Consensus 650 ~~~~~~~~~~~~~~~~~~l~~sp-dg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 650 ADNSGPAATKRKVIYCTSLNWSA-DGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp -----------CCCCEEEEEECT-TSSEEEEEETTSEEEEEEC-
T ss_pred ccccccccCCceeEEeeeEEEcC-CCCEEEEEcCCCeEEEEecc
Confidence 00011122478899988 89999999999999999974
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-41 Score=282.24 Aligned_cols=288 Identities=10% Similarity=0.048 Sum_probs=230.6
Q ss_pred eeCCceeeeEEEEecC---CCceEEEeCCCCcEEEEECCCCcEEEEeec-----CCCCeEEEEEecC----CCEEEEEeC
Q 018858 11 LRGHKATATCCIASRD---RPGFVASSGEDGCICWFDLRSKDVQLVTDV-----GNGPVTSLCFKSG----NEDIIYVSS 78 (349)
Q Consensus 11 l~~h~~~i~~~~~~~~---~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~----~~~l~~~~~ 78 (349)
..+|.++|++++|+|+ +...+++++.++.|++||+.+++.+..+.. |...|.+++|+|+ +++|++++.
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 93 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS 93 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence 3489999999999983 345666666677999999998877666653 5678999999998 679999999
Q ss_pred CCeEEEEEccCCCcccceeeccCcccceEEEEEcc-CCCEEEEEcCCCcEEEEEcCCceEecee---ccccccceeEEEE
Q 018858 79 GKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNP-KSSFLACADDGGDVKIIDIRQHCLYKSL---RAGHSSICSSVQF 154 (349)
Q Consensus 79 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~~v~~~~~ 154 (349)
||.|++||+.+++ .+..+..|...|.+++|+| ++++|++++.||.|++||+++++.+..+ . .|...|.+++|
T Consensus 94 dg~i~v~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~ 169 (366)
T 3k26_A 94 RGIIRIINPITMQ---CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVE-GHRDEVLSADY 169 (366)
T ss_dssp TCEEEEECTTTCC---EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTT-SCSSCEEEEEE
T ss_pred CCEEEEEEchhce---EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccc-cccCceeEEEE
Confidence 9999999998764 3455667889999999999 8999999999999999999999888887 5 78999999999
Q ss_pred ccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecC-------------
Q 018858 155 IPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK------------- 221 (349)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------------- 221 (349)
+| ++++|++++.||.|++||+++++......
T Consensus 170 ~~------------------------------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 213 (366)
T 3k26_A 170 DL------------------------------------LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRP 213 (366)
T ss_dssp CT------------------------------------TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSC
T ss_pred CC------------------------------------CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCccc
Confidence 99 78999999999999999999765432211
Q ss_pred --------------CCCCCccceeeeeccccEEEEeee------eeecCc-----------eeeeeeeeecCCCcceEEE
Q 018858 222 --------------STTKPLKGSQSTSKVNIRDAEMEI------LDQSGG-----------KRLHLDYSVGGHTAAASCV 270 (349)
Q Consensus 222 --------------~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-----------~~~~~~~~~~~h~~~i~~i 270 (349)
......+.+++|+ +.++++.+. ++.... .....+..+..|...|+++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 291 (366)
T 3k26_A 214 FISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYM 291 (366)
T ss_dssp CCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCC
T ss_pred ccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEE
Confidence 1145677888888 566664221 221111 0124466777899999999
Q ss_pred EEeeecCC--ccEEEEeeCCCeEEEEecCCCcceecccccceeeecccc--ccceEEEEeecCCCCcEEEeeCCCeEEEe
Q 018858 271 AFSMFGER--GKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL--NKKVNWLCTTPTESENLVVCDTSKVVKVY 346 (349)
Q Consensus 271 ~~~~~~~~--~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 346 (349)
+|+ |+ +++|++++.||.|++||+.+++... .....+..| ...|++++|+| ++++|++++.||.|++|
T Consensus 292 ~~s---~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw 362 (366)
T 3k26_A 292 RFS---MDFWQKMLALGNQVGKLYVWDLEVEDPHK-----AKCTTLTHHKCGAAIRQTSFSR-DSSILIAVCDDASIWRW 362 (366)
T ss_dssp CCE---ECTTSSEEEEECTTSCEEEEECCSSSGGG-----CEEEEECCTTCCSCEEEEEECT-TSSEEEEEETTSEEEEE
T ss_pred EEc---CCCCCcEEEEEecCCcEEEEECCCCCCcc-----ccceEEcccccCCceEEEEeCC-CCCeEEEEeCCCEEEEE
Confidence 999 78 9999999999999999999874321 233455566 78999999988 88999999999999999
Q ss_pred eCC
Q 018858 347 SIS 349 (349)
Q Consensus 347 ~~~ 349 (349)
|+.
T Consensus 363 d~~ 365 (366)
T 3k26_A 363 DRL 365 (366)
T ss_dssp EC-
T ss_pred Eec
Confidence 974
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-40 Score=283.19 Aligned_cols=268 Identities=15% Similarity=0.230 Sum_probs=221.5
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK 83 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 83 (349)
+++..+.+++|.+.|++++|+|+ +++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|+
T Consensus 139 ~~~~~~~l~~h~~~V~~v~~~~~-~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~ 217 (410)
T 1vyh_C 139 TGDFERTLKGHTDSVQDISFDHS-GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIK 217 (410)
T ss_dssp TCCCCEEECCCSSCEEEEEECTT-SSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred CCcEEEEEeccCCcEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEE
Confidence 56788999999999999999998 89999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCC
Q 018858 84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
+||++++. .+..+.+|...+.++.++|++.+|++|+.|+.|++||++++++...+. .|...|.+++|+|++.+...
T Consensus 218 ~wd~~~~~---~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~ 293 (410)
T 1vyh_C 218 MWEVQTGY---CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR-EHRHVVECISWAPESSYSSI 293 (410)
T ss_dssp EEETTTCC---EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECCSCGGGGG
T ss_pred EEECCCCc---EEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEec-CCCceEEEEEEcCcccccch
Confidence 99999764 445566788999999999999999999999999999999999988998 89999999999996433211
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
..... ...... ...+.+|++|+.|+.|++||++++........ ....+.+++|+|+++++++.
T Consensus 294 ~~~~~----------~~~~~~------~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~-h~~~v~~v~~~~~g~~l~s~ 356 (410)
T 1vyh_C 294 SEATG----------SETKKS------GKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG-HDNWVRGVLFHSGGKFILSC 356 (410)
T ss_dssp GGCCS----------CC-------------CCEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEECSSSSCEEEE
T ss_pred hhhcc----------cccccc------CCCCCEEEEEeCCCeEEEEECCCCceEEEEEC-CCCcEEEEEEcCCCCEEEEE
Confidence 00000 000000 11478999999999999999999887766543 35678999999999999853
Q ss_pred eeeee----cCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecC
Q 018858 244 EILDQ----SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS 297 (349)
Q Consensus 244 ~~~~~----~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~ 297 (349)
+.|+ +......++..+.+|...|++++|+ |++++|++|+.|+.|++|+++
T Consensus 357 -s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~---~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 357 -ADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH---KTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp -ETTTEEEEECCTTSCCCEEEECCSSCEEEEEEC---SSSSCEEEEETTSEEEEEC--
T ss_pred -eCCCeEEEEECCCCceEEEEcCCCCcEEEEEEc---CCCCEEEEEeCCCcEEEEeCC
Confidence 3332 2223445667788999999999999 899999999999999999864
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=286.76 Aligned_cols=300 Identities=15% Similarity=0.184 Sum_probs=225.9
Q ss_pred cCCCCeee-eCCceeeeEEEEec-CCCceEEEeCCCCcEEEEECCC---Cc---EEEEeecCCCCeEEEEEecCCCEEEE
Q 018858 4 AEAKPRRL-RGHKATATCCIASR-DRPGFVASSGEDGCICWFDLRS---KD---VQLVTDVGNGPVTSLCFKSGNEDIIY 75 (349)
Q Consensus 4 ~~~~~~~l-~~h~~~i~~~~~~~-~~~~~l~t~~~dg~i~vwd~~~---~~---~~~~~~~~~~~v~~~~~~~~~~~l~~ 75 (349)
+++.++.+ ++|.+.|++++|+| + +++|++|+.||.|++||+.+ +. ....+ .|..+|.+++|+|++++|++
T Consensus 51 ~g~~~~~~~~~h~~~V~~~~~s~~~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s 128 (437)
T 3gre_A 51 RGKLIATLMENEPNSITSSAVSPGE-TPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAV 128 (437)
T ss_dssp CCCEEEEECTTTTSCEEEEEEECSS-SCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEE
T ss_pred cceEEeeeccCCCCceEEEEECCCC-CCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEE
Confidence 45677888 89999999999999 7 89999999999999999876 33 22333 48999999999999999999
Q ss_pred EeCCCeEEEEEcc---CCCccccee-----ec--cC--cccceEEEE--EccCCCEEEEEcCCCcEEEEEcCCceEecee
Q 018858 76 VSSGKEVKSFDVH---MPASWRPLE-----SY--NY--NKEEINQIV--CNPKSSFLACADDGGDVKIIDIRQHCLYKSL 141 (349)
Q Consensus 76 ~~~dg~i~iwd~~---~~~~~~~~~-----~~--~~--~~~~v~~~~--~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 141 (349)
++.||.|++||++ +++...... .+ .. +...+.++. +++++.+|++++.|+.|++||+++++.+..+
T Consensus 129 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 208 (437)
T 3gre_A 129 SSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQII 208 (437)
T ss_dssp EETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEE
Confidence 9999999999995 332221111 11 11 345566666 5678999999999999999999999999988
Q ss_pred ccc--cccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeee
Q 018858 142 RAG--HSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISR 219 (349)
Q Consensus 142 ~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 219 (349)
. . |...|.+++|+| ++++|++|+.||.|++||+++++....
T Consensus 209 ~-~~~h~~~v~~~~~s~------------------------------------~~~~l~s~~~dg~i~iwd~~~~~~~~~ 251 (437)
T 3gre_A 209 E-NSPRHGAVSSICIDE------------------------------------ECCVLILGTTRGIIDIWDIRFNVLIRS 251 (437)
T ss_dssp E-CCGGGCCEEEEEECT------------------------------------TSCEEEEEETTSCEEEEETTTTEEEEE
T ss_pred c-cCCCCCceEEEEECC------------------------------------CCCEEEEEcCCCeEEEEEcCCccEEEE
Confidence 8 6 788999999999 799999999999999999999887776
Q ss_pred cCCCCCCcccee----eeeccccEEEEeeeeeec----Cceeeeeeee------------------------ecC--CCc
Q 018858 220 SKSTTKPLKGSQ----STSKVNIRDAEMEILDQS----GGKRLHLDYS------------------------VGG--HTA 265 (349)
Q Consensus 220 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~----~~~~~~~~~~------------------------~~~--h~~ 265 (349)
........+..+ .|++++.++++ +..|+. .......... +.+ |..
T Consensus 252 ~~~~~~~~v~~~~~~~~~s~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 330 (437)
T 3gre_A 252 WSFGDHAPITHVEVCQFYGKNSVIVVG-GSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLN 330 (437)
T ss_dssp EBCTTCEEEEEEEECTTTCTTEEEEEE-ESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGG
T ss_pred EecCCCCceEEEEeccccCCCccEEEE-EcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCC
Confidence 654555678888 55567888885 222221 1111122222 222 677
Q ss_pred ceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccc----------------------------cceeeecccc
Q 018858 266 AASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSIN----------------------------NDLLIKNINL 317 (349)
Q Consensus 266 ~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~----------------------------~~~~~~~~~~ 317 (349)
.|++++|+ ++++|++|+.|+.|++||+.+++....... .........|
T Consensus 331 ~v~~l~~~----~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 406 (437)
T 3gre_A 331 ALSTISVS----NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYH 406 (437)
T ss_dssp GGCCEEEE----TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------
T ss_pred ceEEEEEC----CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCccccc
Confidence 89999998 568999999999999999998764422110 0001112338
Q ss_pred ccceEEEEeecC-CCCcEEEeeCCCeEEEee
Q 018858 318 NKKVNWLCTTPT-ESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 318 ~~~v~~~~~~~~-~~~~l~~~~~dg~i~iw~ 347 (349)
.+.|+++++.+. ++.+|++++.||.|+||+
T Consensus 407 ~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 407 HDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 999999999985 366999999999999995
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-41 Score=289.06 Aligned_cols=296 Identities=9% Similarity=-0.017 Sum_probs=238.2
Q ss_pred CCceeeeEEEEecCCCceEEEeCCCCcEEEEECCC----CcEEEEeecCCCCeEEEEEecC-CCEEEEEeCCCeEEEEEc
Q 018858 13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRS----KDVQLVTDVGNGPVTSLCFKSG-NEDIIYVSSGKEVKSFDV 87 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~ 87 (349)
.|...|++++|+|+ +++|++++.||.|++||+.+ .+.+..+..|...|.+++|+|+ +++|++++.|+.|++||+
T Consensus 65 ~~~~~v~~~~~s~~-~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~ 143 (416)
T 2pm9_A 65 QVDSKFNDLDWSHN-NKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM 143 (416)
T ss_dssp CCSSCEEEEEECSS-SSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBT
T ss_pred ecCCceEEEEECCC-CCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEEC
Confidence 58899999999998 89999999999999999987 4578888999999999999998 899999999999999999
Q ss_pred cCCC------cccceeeccCcccceEEEEEccC-CCEEEEEcCCCcEEEEEcCCceEeceecccc------ccceeEEEE
Q 018858 88 HMPA------SWRPLESYNYNKEEINQIVCNPK-SSFLACADDGGDVKIIDIRQHCLYKSLRAGH------SSICSSVQF 154 (349)
Q Consensus 88 ~~~~------~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~~v~~~~~ 154 (349)
++++ ....+.....|...+.+++|+|+ +.+|++++.||.|++||+++++.+..+. .+ ...+.+++|
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~~~~~v~~~~~ 222 (416)
T 2pm9_A 144 NKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLS-YTSPNSGIKQQLSVVEW 222 (416)
T ss_dssp TTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEEC-CCCCSSCCCCCEEEEEE
T ss_pred CCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEe-ccccccccCCceEEEEE
Confidence 9765 33333345667889999999999 7899999999999999999999888887 54 788999999
Q ss_pred ccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCC---eEEEEEccCceeeeecCC-CCCCccce
Q 018858 155 IPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG---VVDVINIESELNISRSKS-TTKPLKGS 230 (349)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~-~~~~~~~~ 230 (349)
+|+ ...++++++.|+ .|++||+++......... .....+..
T Consensus 223 ~~~-----------------------------------~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~ 267 (416)
T 2pm9_A 223 HPK-----------------------------------NSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILS 267 (416)
T ss_dssp CSS-----------------------------------CTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEE
T ss_pred CCC-----------------------------------CCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeE
Confidence 993 246899999998 999999998643333333 55678999
Q ss_pred eeeec-cccEEEEeee---eeecCceeeeeeeeecCCCcceEEEEEeeecCCc-cEEEEeeCCCeEEEEecCCCcceecc
Q 018858 231 QSTSK-VNIRDAEMEI---LDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERG-KYLISGGNDKLVKVWDCSRFQGVQTS 305 (349)
Q Consensus 231 ~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~-~~l~s~~~d~~i~vwd~~~~~~~~~~ 305 (349)
++|+| +++++++.+. ...+.....+.+..+.+|...|.+++|+ |++ .+|++++.|+.|++||+.+.......
T Consensus 268 ~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s---~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~ 344 (416)
T 2pm9_A 268 LDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFA---PEAPDLFACASFDNKIEVQTLQNLTNTLDE 344 (416)
T ss_dssp EEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEEC---TTCTTEEEECCSSSEEEEEESCCCCCSSCC
T ss_pred EEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEEC---CCCCCEEEEEecCCcEEEEEccCCCCCccc
Confidence 99999 8888885332 1222333456677888999999999999 888 89999999999999999886533211
Q ss_pred cc--------cce------------------eeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 306 IN--------NDL------------------LIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 306 ~~--------~~~------------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.. ... +.....|...+.+++|+| +|++|++++.|+.|+||++.
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~la~~~~d~~v~~w~~~ 413 (416)
T 2pm9_A 345 QETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAF-GGKLVQITPDGKGVSITNPK 413 (416)
T ss_dssp ----------------------CCSCCCSSCCCCCSTTCCCSCCCEEET-TTEEECBCTTSSCBCCBCCC
T ss_pred ccccccccCCcccccccccccccccccccccccCCccccCCccceEEee-CCeEEEEeCCCCeEEEEEec
Confidence 00 000 011122677888999988 89999999999999999974
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-40 Score=274.87 Aligned_cols=267 Identities=15% Similarity=0.150 Sum_probs=217.3
Q ss_pred CCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC----cEEEEeecCCCCeEEEEEec--CCCEEEEEeCCC
Q 018858 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK----DVQLVTDVGNGPVTSLCFKS--GNEDIIYVSSGK 80 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg 80 (349)
..+.+.+|.+.|++++|+|+ +++|++|+.||.|++||+.++ +....+.+|..+|.+++|+| ++++|++++.||
T Consensus 3 ~~~~~~gH~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg 81 (351)
T 3f3f_A 3 MQPFDSGHDDLVHDVVYDFY-GRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDK 81 (351)
T ss_dssp CCCEECCCSSCEEEEEECSS-SSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred ccccCcccccceeEEEEcCC-CCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCC
Confidence 35677899999999999998 899999999999999999876 45677889999999999999 699999999999
Q ss_pred eEEEEEccCCCcc------cceeeccCcccceEEEEEccC--CCEEEEEcCCCcEEEEEcCCceEeceec----------
Q 018858 81 EVKSFDVHMPASW------RPLESYNYNKEEINQIVCNPK--SSFLACADDGGDVKIIDIRQHCLYKSLR---------- 142 (349)
Q Consensus 81 ~i~iwd~~~~~~~------~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~---------- 142 (349)
.|++||+++++.. ..+..+..|...|.+++|+|+ +++|++++.||.|++||+++++.+..+.
T Consensus 82 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 161 (351)
T 3f3f_A 82 TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSI 161 (351)
T ss_dssp CEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSC
T ss_pred eEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccc
Confidence 9999999875321 345667778899999999999 9999999999999999999876655443
Q ss_pred --cccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeec
Q 018858 143 --AGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS 220 (349)
Q Consensus 143 --~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 220 (349)
..+...+.+++|+|+. .++.++++++.++.+.+|+...+.
T Consensus 162 ~~~~~~~~~~~~~~~p~~---------------------------------~~~~~l~~~~~~~~~~~~~~~~~~----- 203 (351)
T 3f3f_A 162 PPANHLQSDFCLSWCPSR---------------------------------FSPEKLAVSALEQAIIYQRGKDGK----- 203 (351)
T ss_dssp CCSSCSCCCEEEEECCCS---------------------------------SSCCEEEEEETTEEEEEEECTTSC-----
T ss_pred ccCCcccceeEEEeccCC---------------------------------CCCcEEEEecCCCcEEEEccCCCc-----
Confidence 1345566777777620 038899999999999777776531
Q ss_pred CCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCc----cEEEEeeCCCeEEEEec
Q 018858 221 KSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERG----KYLISGGNDKLVKVWDC 296 (349)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~----~~l~s~~~d~~i~vwd~ 296 (349)
......+.+|...|++++|+ |++ ++|++++.||.|++||+
T Consensus 204 ---------------------------------~~~~~~~~~h~~~i~~~~~~---p~~~~~~~~l~s~~~dg~i~iwd~ 247 (351)
T 3f3f_A 204 ---------------------------------LHVAAKLPGHKSLIRSISWA---PSIGRWYQLIATGCKDGRIRIFKI 247 (351)
T ss_dssp ---------------------------------EEEEEECCCCCSCEEEEEEC---CCSSCSSEEEEEEETTSCEEEEEE
T ss_pred ---------------------------------eeeeeecCCCCcceeEEEEC---CCCCCcceEEEEEcCCCeEEEEeC
Confidence 23456778899999999999 787 89999999999999999
Q ss_pred CCCcceec-------------------------------------ccccceeeeccccccceEEEEeecCCCCcEEEeeC
Q 018858 297 SRFQGVQT-------------------------------------SINNDLLIKNINLNKKVNWLCTTPTESENLVVCDT 339 (349)
Q Consensus 297 ~~~~~~~~-------------------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 339 (349)
........ ......+..+.+|...|++++|+| ++++|++++.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~ 326 (351)
T 3f3f_A 248 TEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNL-TGTILSSAGD 326 (351)
T ss_dssp EECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECS-SSCCEEEEET
T ss_pred CCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcC-CCCEEEEecC
Confidence 87422110 001245566778999999999988 8889999999
Q ss_pred CCeEEEeeCC
Q 018858 340 SKVVKVYSIS 349 (349)
Q Consensus 340 dg~i~iw~~~ 349 (349)
||.|++|+++
T Consensus 327 dg~v~iw~~~ 336 (351)
T 3f3f_A 327 DGKVRLWKAT 336 (351)
T ss_dssp TSCEEEEEEC
T ss_pred CCcEEEEecC
Confidence 9999999974
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-41 Score=287.94 Aligned_cols=287 Identities=11% Similarity=0.115 Sum_probs=235.0
Q ss_pred CceeeeEEEEecCCCceEEEe----------CCCCcEEEEECCCCc---EEEEeecCCCCeEEEEEecCCCEEEEEeCCC
Q 018858 14 HKATATCCIASRDRPGFVASS----------GEDGCICWFDLRSKD---VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGK 80 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~----------~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 80 (349)
+...|.+++|+|++..+|++| +.|+.|++||+.+++ .+..+ .|...|.+++|+|++++|++++.||
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg 89 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNG 89 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSS
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCC
Confidence 456899999999943499999 889999999998775 33333 4889999999999999999999999
Q ss_pred eEEEEEccCCCc-ccceeeccCcccceEEEEEccC-CCEEEEEcCCCcEEEEEcCCce------Eece---eccccccce
Q 018858 81 EVKSFDVHMPAS-WRPLESYNYNKEEINQIVCNPK-SSFLACADDGGDVKIIDIRQHC------LYKS---LRAGHSSIC 149 (349)
Q Consensus 81 ~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~------~~~~---~~~~~~~~v 149 (349)
.|++||+.+... ...+..+..|...|.+++|+|+ +++|++++.|+.|++||+++++ .... +. .|...+
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~v 168 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSM-SSVDEV 168 (416)
T ss_dssp CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSC-CSSCCC
T ss_pred eEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccccccc-CCCCCe
Confidence 999999986221 2356667788899999999998 8999999999999999999776 3222 34 688899
Q ss_pred eEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCC-----
Q 018858 150 SSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTT----- 224 (349)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----- 224 (349)
.+++|+|+ .+.+|++++.||.|++||+++++.........
T Consensus 169 ~~~~~~~~-----------------------------------~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 213 (416)
T 2pm9_A 169 ISLAWNQS-----------------------------------LAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGI 213 (416)
T ss_dssp CEEEECSS-----------------------------------CTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCC
T ss_pred eEEEeCCC-----------------------------------CCcEEEEEcCCCCEEEEECCCCCcceEEecccccccc
Confidence 99999992 27899999999999999999988777665543
Q ss_pred CCccceeeeeccccEEEEeeeeee---cCce----e-eeeeeeec-CCCcceEEEEEeeecC-CccEEEEeeCCCeEEEE
Q 018858 225 KPLKGSQSTSKVNIRDAEMEILDQ---SGGK----R-LHLDYSVG-GHTAAASCVAFSMFGE-RGKYLISGGNDKLVKVW 294 (349)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----~-~~~~~~~~-~h~~~i~~i~~~~~~~-~~~~l~s~~~d~~i~vw 294 (349)
...+..++|+|++..+++.+..+. .+.. . ......+. +|...|.+++|+ | ++++|++++.|+.|++|
T Consensus 214 ~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s---~~~~~~l~s~~~dg~v~~w 290 (416)
T 2pm9_A 214 KQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWC---HQDEHLLLSSGRDNTVLLW 290 (416)
T ss_dssp CCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEEC---SSCSSCEEEEESSSEEEEE
T ss_pred CCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeC---CCCCCeEEEEeCCCCEEEe
Confidence 678999999999854333444443 2221 1 13455666 899999999999 7 89999999999999999
Q ss_pred ecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 295 DCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 295 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
|++++ ..+..+..|...|++++|+|..+++|++++.||.|++|+++
T Consensus 291 d~~~~---------~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~ 336 (416)
T 2pm9_A 291 NPESA---------EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQ 336 (416)
T ss_dssp CSSSC---------CEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESC
T ss_pred eCCCC---------ccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEcc
Confidence 99987 56677788999999999998433899999999999999974
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-40 Score=271.43 Aligned_cols=244 Identities=20% Similarity=0.231 Sum_probs=214.7
Q ss_pred CeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEc
Q 018858 8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDV 87 (349)
Q Consensus 8 ~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 87 (349)
...+.+|...|.+++|+++ +.++++++.|++|++||+.+++.+..+..|...+.+++|+|++++|++++.++.|++|++
T Consensus 73 ~~~l~gh~~~v~~~~~~~~-~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~ 151 (321)
T 3ow8_A 73 QWSLEGHQLGVVSVDISHT-LPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGV 151 (321)
T ss_dssp EEEECCCSSCEEEEEECSS-SSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEET
T ss_pred eeeeccCCCCEEEEEECCC-CCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEc
Confidence 4568899999999999998 899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCC
Q 018858 88 HMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENN 167 (349)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 167 (349)
++++.. ..+..+...+.+++|+|++++|++|+.||.|++||+++++.+..+. +|...|.+++|+|
T Consensus 152 ~~~~~~---~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~sp----------- 216 (321)
T 3ow8_A 152 ESGKKE---YSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLE-GHAMPIRSLTFSP----------- 216 (321)
T ss_dssp TTCSEE---EEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCCCEEEECT-----------
T ss_pred CCCcee---EEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc-ccCCceeEEEEcC-----------
Confidence 976433 3444566789999999999999999999999999999999999999 8999999999999
Q ss_pred CCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeee
Q 018858 168 GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD 247 (349)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (349)
++++|++|+.||.|++||++.......+.. ....+..++|+|+++++++ ++.|
T Consensus 217 -------------------------d~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-h~~~v~~~~~sp~~~~l~s-~s~D 269 (321)
T 3ow8_A 217 -------------------------DSQLLVTASDDGYIKIYDVQHANLAGTLSG-HASWVLNVAFCPDDTHFVS-SSSD 269 (321)
T ss_dssp -------------------------TSCEEEEECTTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEE-EETT
T ss_pred -------------------------CCCEEEEEcCCCeEEEEECCCcceeEEEcC-CCCceEEEEECCCCCEEEE-EeCC
Confidence 799999999999999999998766655443 4567889999999999885 3333
Q ss_pred ec----CceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecC
Q 018858 248 QS----GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS 297 (349)
Q Consensus 248 ~~----~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~ 297 (349)
+. ......++..+.+|...|.+++|+ |++++|++++.|+.|++||++
T Consensus 270 ~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s---~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 270 KSVKVWDVGTRTCVHTFFDHQDQVWGVKYN---GNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEEC---TTSSEEEEEETTCCEEEEECC
T ss_pred CcEEEEeCCCCEEEEEEcCCCCcEEEEEEC---CCCCEEEEEeCCCeEEEEeCC
Confidence 32 222446677888999999999999 899999999999999999974
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-40 Score=269.63 Aligned_cols=249 Identities=12% Similarity=0.169 Sum_probs=208.0
Q ss_pred cEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEE
Q 018858 49 DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVK 128 (349)
Q Consensus 49 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 128 (349)
+...++.+|...|.+++|+|++++|++++.||.|++||++++. .+..+..|...+.+++|+|++++|++|+.|+.|+
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~ 80 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQV---EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR 80 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE---EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc---eeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEE
Confidence 3467889999999999999999999999999999999998763 4455666788999999999999999999999999
Q ss_pred EEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEE
Q 018858 129 IIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDV 208 (349)
Q Consensus 129 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 208 (349)
+||+++++.+..+. +|...|.+++|+| ++++|++|+.||+|++
T Consensus 81 vwd~~~~~~~~~~~-~h~~~v~~~~~~~------------------------------------~~~~l~sgs~D~~v~l 123 (304)
T 2ynn_A 81 VFNYNTGEKVVDFE-AHPDYIRSIAVHP------------------------------------TKPYVLSGSDDLTVKL 123 (304)
T ss_dssp EEETTTCCEEEEEE-CCSSCEEEEEECS------------------------------------SSSEEEEEETTSCEEE
T ss_pred EEECCCCcEEEEEe-CCCCcEEEEEEcC------------------------------------CCCEEEEECCCCeEEE
Confidence 99999999999999 9999999999999 7899999999999999
Q ss_pred EEccCceeeeecCCCCCCccceeeeec-cccEEEEeeeeeecCce----eeeeeee-ecCCCcceEEEEEeeecCCccEE
Q 018858 209 INIESELNISRSKSTTKPLKGSQSTSK-VNIRDAEMEILDQSGGK----RLHLDYS-VGGHTAAASCVAFSMFGERGKYL 282 (349)
Q Consensus 209 ~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~-~~~h~~~i~~i~~~~~~~~~~~l 282 (349)
||++++.............+.+++|+| ++..+++ ++.|+.+.. ....... ..+|...+..+.++|. +++++|
T Consensus 124 Wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s-gs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~l 201 (304)
T 2ynn_A 124 WNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS-GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL-PDKPYM 201 (304)
T ss_dssp EEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEE-EETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCS-TTCCEE
T ss_pred EECCCCcchhhhhcccCCcEEEEEECCCCCCEEEE-EeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEc-CCCCEE
Confidence 999987554444445567889999999 5677774 443333211 1112222 2356678999999842 377899
Q ss_pred EEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 283 ISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 283 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
++++.|+.|++||++++ ..+..+.+|...|.+++|+| ++.+|++++.||.|++||++
T Consensus 202 ~s~s~D~~i~iWd~~~~---------~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~Dg~i~iWd~~ 258 (304)
T 2ynn_A 202 ITASDDLTIKIWDYQTK---------SCVATLEGHMSNVSFAVFHP-TLPIIISGSEDGTLKIWNSS 258 (304)
T ss_dssp EEEETTSEEEEEETTTT---------EEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETT
T ss_pred EEEcCCCeEEEEeCCCC---------ccceeeCCCCCCEEEEEECC-CCCEEEEEcCCCeEEEEECC
Confidence 99999999999999987 67778889999999999988 77899999999999999974
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-39 Score=276.75 Aligned_cols=318 Identities=13% Similarity=0.071 Sum_probs=247.9
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 85 (349)
+..+.+..| ..+....|+|+ +++|++|+.||.|++||+.+++....+..|...|.+++|+|++++|++++.|+.|++|
T Consensus 89 ~~~~~~~~~-~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iw 166 (420)
T 3vl1_A 89 DGSKMLKRA-DYTAVDTAKLQ-MRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIW 166 (420)
T ss_dssp ETTTTSCSC-CEEEEEEECSS-SCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ceeeEEecC-CceEEEEEecC-CCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEE
Confidence 344555555 44455567777 8999999999999999999999888888999999999999999999999999999999
Q ss_pred EccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceecc--ccccceeEEEEccCCCCCCC
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA--GHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~ 163 (349)
|+++++. +..+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+.. .+...+.+++|.|...-
T Consensus 167 d~~~~~~---~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--- 240 (420)
T 3vl1_A 167 SVKDGSN---PRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDR--- 240 (420)
T ss_dssp ETTTCCC---CEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCS---
T ss_pred eCCCCcC---ceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcc---
Confidence 9997644 345567889999999999999999999999999999999998887761 35677899999874211
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeecccc-EEEE
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNI-RDAE 242 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 242 (349)
.........+.+++++| ++++|++++.||.|++||+++++............+.+++|+|+++ ++++
T Consensus 241 ------~~~~~~~~~v~~~~~s~------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 308 (420)
T 3vl1_A 241 ------QLHEISTSKKNNLEFGT------YGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYA 308 (420)
T ss_dssp ------SCGGGCCCCCCTTCSSC------TTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEE
T ss_pred ------eeeecccCcccceEEcC------CCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEE
Confidence 11222345567777877 8999999999999999999998877777666778899999999999 6664
Q ss_pred eeeeeecCc----eee-eeeeeecC-CCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccc
Q 018858 243 MEILDQSGG----KRL-HLDYSVGG-HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNIN 316 (349)
Q Consensus 243 ~~~~~~~~~----~~~-~~~~~~~~-h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 316 (349)
+..++.+. ... .++..+.. |...|.++.+ +++++|++++.|+.|++|++....................
T Consensus 309 -g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~----~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~ 383 (420)
T 3vl1_A 309 -GYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF----AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVS 383 (420)
T ss_dssp -EETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE----ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECC
T ss_pred -EeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe----CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEcc
Confidence 43333221 111 22445555 6678888855 4788999999999999999987533221111122234567
Q ss_pred cccceEEEEeecCCCC---cEEEeeCCCeEEEeeCC
Q 018858 317 LNKKVNWLCTTPTESE---NLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 317 ~~~~v~~~~~~~~~~~---~l~~~~~dg~i~iw~~~ 349 (349)
|...|.+++|+| +++ .|++++.+|.+.+|+++
T Consensus 384 ~~~~v~~~~~s~-~~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 384 NDDAVSQFCYVS-DDESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp SSCCCCEEEEEC-CSSSSCEEEEEETTTEEEEEESC
T ss_pred CCcceEEEEEcc-CCCCcceEEEEcCCceEEEEecc
Confidence 889999999998 776 68888899999999975
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-40 Score=284.18 Aligned_cols=291 Identities=14% Similarity=0.105 Sum_probs=217.5
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcE--EEEeecCCCCeEEEEEec-CCCEEEEEeCCCeE
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV--QLVTDVGNGPVTSLCFKS-GNEDIIYVSSGKEV 82 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i 82 (349)
...+...+|...|+|++|+|.++++||+|+.||.|+|||+.+++. ...+.+|...|++++|+| ++++|++++.||+|
T Consensus 110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v 189 (435)
T 4e54_B 110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTT 189 (435)
T ss_dssp TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCE
T ss_pred eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEE
Confidence 445667789999999999997688999999999999999987654 445668999999999998 68899999999999
Q ss_pred EEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCC
Q 018858 83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEG 162 (349)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 162 (349)
++||++++. ...+.....+...+.+++|+|++++|++|+.||.|++||++. +.+..+. +|...|.+++|+|+
T Consensus 190 ~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~-~h~~~v~~v~~~p~----- 261 (435)
T 4e54_B 190 RLQDFKGNI-LRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLR-MHKKKVTHVALNPC----- 261 (435)
T ss_dssp EEEETTSCE-EEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSB-CCSSCEEEEEECTT-----
T ss_pred EEeeccCCc-eeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEe-cccceEEeeeecCC-----
Confidence 999998542 233333333445678999999999999999999999999864 4567778 89999999999994
Q ss_pred CCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeec--CCCCCCccceeeeeccccEE
Q 018858 163 LPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS--KSTTKPLKGSQSTSKVNIRD 240 (349)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 240 (349)
...+|++|+.|+.|++||+++.+..... ...+...+.+++|+|+|.+|
T Consensus 262 ------------------------------~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l 311 (435)
T 4e54_B 262 ------------------------------CDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARL 311 (435)
T ss_dssp ------------------------------CSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEE
T ss_pred ------------------------------CceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCee
Confidence 3458889999999999999876544332 23346778999999999999
Q ss_pred EEeeeeeecCc----eeeeeeeeecCCCc------ceEEEEEeeecCCccEEEEee------------CCCeEEEEecCC
Q 018858 241 AEMEILDQSGG----KRLHLDYSVGGHTA------AASCVAFSMFGERGKYLISGG------------NDKLVKVWDCSR 298 (349)
Q Consensus 241 ~~~~~~~~~~~----~~~~~~~~~~~h~~------~i~~i~~~~~~~~~~~l~s~~------------~d~~i~vwd~~~ 298 (349)
++ +..|+.+. ........+..|.. .+....|+ |++.++++++ .++.|++||..+
T Consensus 312 ~s-~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~ 387 (435)
T 4e54_B 312 LT-TDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWH---PRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNS 387 (435)
T ss_dssp EE-EESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEEC---SSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSS
T ss_pred EE-EcCCCEEEEEECCCCccceEEecccccccccceeEEEEEc---CCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCC
Confidence 85 33333221 11222222222221 22334555 5555555543 346799999998
Q ss_pred Ccceecccccceeee-ccccccceEEE-EeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 299 FQGVQTSINNDLLIK-NINLNKKVNWL-CTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 299 ~~~~~~~~~~~~~~~-~~~~~~~v~~~-~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
+ ..+.. ..+|...|.++ +|+| ++++|++|+ |+.|+||+++
T Consensus 388 g---------~~~~~l~~~~~~~v~s~~~fsp-dg~~lasg~-d~~i~iW~~~ 429 (435)
T 4e54_B 388 G---------KMMCQLYDPESSGISSLNEFNP-MGDTLASAM-GYHILIWSQQ 429 (435)
T ss_dssp C---------CEEEEECCSSCCCCCCEEEECT-TSSCEEEEC-SSEEEECCCC
T ss_pred C---------cEEEEEeCCCCCcEEEEEEECC-CCCEEEEEc-CCcEEEEECC
Confidence 7 44433 45688889888 5777 888888765 8899999974
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-39 Score=300.20 Aligned_cols=291 Identities=15% Similarity=0.135 Sum_probs=249.7
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
.+..+.|++|.+.|++++|+|+ +.+|++++.||.|++||+.+++.+..+..|..+|.+++|+|++++|++++.||.|++
T Consensus 3 l~~~~~~~~h~~~v~~i~~sp~-~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 81 (814)
T 3mkq_A 3 LDIKKTFSNRSDRVKGIDFHPT-EPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRV 81 (814)
T ss_dssp CCCEEEEEEECSCEEEEEECSS-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred cccceeeecCCCceEEEEECCC-CCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 4678899999999999999998 899999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCc-eEeceeccccccceeEEEEccCCCCCCC
Q 018858 85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQH-CLYKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
||+.+++ .+..+..|...|++++|+|++++|++++.||.|++||++++ .....+. +|...+.+++|+|+
T Consensus 82 w~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-~~~~~v~~~~~~p~------ 151 (814)
T 3mkq_A 82 FNYNTGE---KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE-GHEHFVMCVAFNPK------ 151 (814)
T ss_dssp EETTTCC---EEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEE-CCSSCEEEEEEETT------
T ss_pred EECCCCc---EEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEc-CCCCcEEEEEEEcC------
Confidence 9999764 34455668899999999999999999999999999999976 6667777 89999999999994
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeec--cccEEE
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSK--VNIRDA 241 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 241 (349)
+++.|++++.||.|++||++++.............+..++|+| ++.+++
T Consensus 152 -----------------------------~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 202 (814)
T 3mkq_A 152 -----------------------------DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202 (814)
T ss_dssp -----------------------------EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEE
T ss_pred -----------------------------CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEE
Confidence 5789999999999999999887766666666667889999999 898888
Q ss_pred Eeeeeee----cCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecccc
Q 018858 242 EMEILDQ----SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL 317 (349)
Q Consensus 242 ~~~~~~~----~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 317 (349)
+.+ .++ +..........+.+|...|.++.|+ |+++++++++.||.|++||+.++ ..+.....|
T Consensus 203 ~~~-~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~dg~v~vwd~~~~---------~~~~~~~~~ 269 (814)
T 3mkq_A 203 TAS-DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH---PTLPIIISGSEDGTLKIWNSSTY---------KVEKTLNVG 269 (814)
T ss_dssp EEC-TTSEEEEEETTTTEEEEEEECCSSCEEEEEEC---SSSSEEEEEETTSCEEEEETTTC---------SEEEEECCS
T ss_pred EEe-CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc---CCCCEEEEEeCCCeEEEEECCCC---------cEEEEeecC
Confidence 532 222 1222335566778899999999999 89999999999999999999987 666677788
Q ss_pred ccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 318 NKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 318 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
...+.+++|+|.....+++++.|+.+.+|++
T Consensus 270 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (814)
T 3mkq_A 270 LERSWCIATHPTGRKNYIASGFDNGFTVLSL 300 (814)
T ss_dssp SSSEEEEEECTTCGGGEEEEEETTEEEEEEC
T ss_pred CCcEEEEEEccCCCceEEEEEeCCCEEEEEc
Confidence 8999999999844344466667778888875
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-39 Score=267.41 Aligned_cols=247 Identities=18% Similarity=0.181 Sum_probs=209.8
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 85 (349)
.+++.+++|...|.+++|+|+ +++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 56 ~~~~~~~~h~~~v~~~~~s~d-g~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vw 134 (319)
T 3frx_A 56 VPVRSFKGHSHIVQDCTLTAD-GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134 (319)
T ss_dssp EEEEEEECCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred ccceEEeCCcccEEEEEECCC-CCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 356789999999999999998 8999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCcccceeeccCcccceEEEEEccC------CCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCC
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPK------SSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKP 159 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 159 (349)
|++. ..+..+.+|...+.++++.|. +..+++++.|+.|++||+++.+....+. +|...|.+++|+|
T Consensus 135 d~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~sp--- 206 (319)
T 3frx_A 135 TIKG----QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI-GHNSNINTLTASP--- 206 (319)
T ss_dssp ETTS----CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEEC-CCCSCEEEEEECT---
T ss_pred ECCC----CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeec-CCCCcEEEEEEcC---
Confidence 9973 345566778899999999985 4489999999999999999999888888 8999999999999
Q ss_pred CCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccE
Q 018858 160 WEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIR 239 (349)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (349)
++++|++++.||.|++||+++.+....... ...+..++|+|++.+
T Consensus 207 ---------------------------------~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~v~~~~~sp~~~~ 251 (319)
T 3frx_A 207 ---------------------------------DGTLIASAGKDGEIMLWNLAAKKAMYTLSA--QDEVFSLAFSPNRYW 251 (319)
T ss_dssp ---------------------------------TSSEEEEEETTCEEEEEETTTTEEEEEEEC--CSCEEEEEECSSSSE
T ss_pred ---------------------------------CCCEEEEEeCCCeEEEEECCCCcEEEEecC--CCcEEEEEEcCCCCE
Confidence 899999999999999999999877766554 357899999999999
Q ss_pred EEEeeeeeecCc--eeeeeeeee--------cCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCC
Q 018858 240 DAEMEILDQSGG--KRLHLDYSV--------GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 240 ~~~~~~~~~~~~--~~~~~~~~~--------~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 299 (349)
+++.......+. ........+ ..|...+.+++|+ |+|++|++|+.|+.|+|||+.+.
T Consensus 252 la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---pdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 252 LAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWS---ADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEEC---TTSSEEEEEETTSCEEEEEEEEC
T ss_pred EEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEEC---CCCCEEEEeecCceEEEEEEeec
Confidence 986432211110 011111111 2356679999999 99999999999999999998763
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-39 Score=310.49 Aligned_cols=288 Identities=16% Similarity=0.163 Sum_probs=247.0
Q ss_pred CCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEE
Q 018858 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFD 86 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 86 (349)
....+.+|.+.|++++|+|+ +++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||
T Consensus 607 ~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd 685 (1249)
T 3sfz_A 607 SRLVVRPHTDAVYHACFSQD-GQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD 685 (1249)
T ss_dssp CSEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ceEEEecccccEEEEEECCC-CCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEE
Confidence 44567899999999999998 89999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcccceeeccCcccceEEEEEcc--CCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCC
Q 018858 87 VHMPASWRPLESYNYNKEEINQIVCNP--KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLP 164 (349)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 164 (349)
+.+++ .+..+..|...|.+++|+| ++.++++|+.|+.|++||+++++++..+. +|...|.+++|+|
T Consensus 686 ~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~-~h~~~v~~~~~sp-------- 753 (1249)
T 3sfz_A 686 SATGK---LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMF-GHTNSVNHCRFSP-------- 753 (1249)
T ss_dssp TTTCC---EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEEC-CCSSCEEEEEECS--------
T ss_pred CCCCc---eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheec-CCCCCEEEEEEec--------
Confidence 99864 4455667889999999999 45689999999999999999999999998 8999999999999
Q ss_pred CCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCC------------CCCCccceee
Q 018858 165 ENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS------------TTKPLKGSQS 232 (349)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------------~~~~~~~~~~ 232 (349)
++++|++++.||.|++||++++........ .....+.+++
T Consensus 754 ----------------------------~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 805 (1249)
T 3sfz_A 754 ----------------------------DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCS 805 (1249)
T ss_dssp ----------------------------STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCC
T ss_pred ----------------------------CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEE
Confidence 799999999999999999998765543321 1233678899
Q ss_pred eeccccEEEEeeeeeecC--ceeeeeeee-ecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccc
Q 018858 233 TSKVNIRDAEMEILDQSG--GKRLHLDYS-VGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINND 309 (349)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~ 309 (349)
|+|+|+.+++.+...... ......... ..+|...|.+++|+ |+++++++++.|+.|++||+.++ .
T Consensus 806 ~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~s---p~~~~l~~~~~dg~v~vwd~~~~---------~ 873 (1249)
T 3sfz_A 806 WSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFS---PYDHLAVIALSQYCVELWNIDSR---------L 873 (1249)
T ss_dssp BCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEEC---SSTTEEEEECSSSCEEEEETTTT---------E
T ss_pred ECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEc---CCCCEEEEEeCCCeEEEEEcCCC---------c
Confidence 999999998644221111 111122222 34788999999999 89999999999999999999987 6
Q ss_pred eeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 310 LLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 310 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.+....+|...|.+++|+| ++++|++++.||.|++|++
T Consensus 874 ~~~~~~~h~~~v~~v~~sp-dg~~l~s~s~dg~v~vw~~ 911 (1249)
T 3sfz_A 874 KVADCRGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWET 911 (1249)
T ss_dssp EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEH
T ss_pred eeeecCCCccceEEEEECC-CCCEEEEEeCCCeEEEEEc
Confidence 6677889999999999988 8889999999999999985
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-40 Score=287.56 Aligned_cols=298 Identities=12% Similarity=0.043 Sum_probs=217.2
Q ss_pred eeeeCCceeeeEEEEecCC-C-------ceEEE-------------------eCCCCcEEEEECCCCcE----EEEeecC
Q 018858 9 RRLRGHKATATCCIASRDR-P-------GFVAS-------------------SGEDGCICWFDLRSKDV----QLVTDVG 57 (349)
Q Consensus 9 ~~l~~h~~~i~~~~~~~~~-~-------~~l~t-------------------~~~dg~i~vwd~~~~~~----~~~~~~~ 57 (349)
..+. +.+.|.+++|+|++ + ++||+ ++.|++|+|||+.+++. ...+.+|
T Consensus 128 ~~~~-~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~ 206 (524)
T 2j04_B 128 FIYN-VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHS 206 (524)
T ss_dssp EEEE-CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEEC
T ss_pred EEEE-CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEec
Confidence 3444 67899999999973 1 56655 55789999999987764 2456778
Q ss_pred CCCeEEEEEecC------CCEEEEEeCCCeEEEEEccCCCcc--------cceeeccCcccceEEEEEccCCCEEEEEcC
Q 018858 58 NGPVTSLCFKSG------NEDIIYVSSGKEVKSFDVHMPASW--------RPLESYNYNKEEINQIVCNPKSSFLACADD 123 (349)
Q Consensus 58 ~~~v~~~~~~~~------~~~l~~~~~dg~i~iwd~~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 123 (349)
.+.|..++|+|+ +.+||+++.||+|++||+..+... .+...+.+|...|++++|+++ ..|++|+.
T Consensus 207 ~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~ 285 (524)
T 2j04_B 207 FGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFK 285 (524)
T ss_dssp CCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEET
T ss_pred CCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeC
Confidence 899999999996 579999999999999999865422 123356678899999999986 48999999
Q ss_pred CCcEEEEEcCCce-EeceeccccccceeEE--EEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCC-cEEEE
Q 018858 124 GGDVKIIDIRQHC-LYKSLRAGHSSICSSV--QFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTN-KICVV 199 (349)
Q Consensus 124 dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~ 199 (349)
||.|++||++++. +...+. +|...|.++ .|+| ++ .+|++
T Consensus 286 DgtV~lWD~~~~~~~~~~~~-~H~~~V~sv~~~~s~------------------------------------~g~~~laS 328 (524)
T 2j04_B 286 NGFVAEFDLTDPEVPSFYDQ-VHDSYILSVSTAYSD------------------------------------FEDTVVST 328 (524)
T ss_dssp TSEEEEEETTBCSSCSEEEE-CSSSCEEEEEEECCT------------------------------------TSCCEEEE
T ss_pred CCEEEEEECCCCCCceEEee-cccccEEEEEEEcCC------------------------------------CCCeEEEE
Confidence 9999999999764 444577 899999999 4666 66 89999
Q ss_pred EcCCCeEEEEEccCceeeeecCCCCC-CccceeeeeccccEEEEeeeeeec----CceeeeeeeeecCCCcceEEEEEee
Q 018858 200 AKGDGVVDVINIESELNISRSKSTTK-PLKGSQSTSKVNIRDAEMEILDQS----GGKRLHLDYSVGGHTAAASCVAFSM 274 (349)
Q Consensus 200 ~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~h~~~i~~i~~~~ 274 (349)
++.|++|++||+++.+.......... ..+.+++|+|+++.+++.+ .+.. ......+...+.+|.+.|++++|+
T Consensus 329 ~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~-~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~S- 406 (524)
T 2j04_B 329 VAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSD-GASSLRAVPSRAAFAVHPLVSRETTITAIGVS- 406 (524)
T ss_dssp EETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEEC-SSSEEEEEETTCTTCCEEEEECSSCEEEEECC-
T ss_pred eccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeC-CCCcEEEEECcccccceeeecCCCceEEEEeC-
Confidence 99999999999998765443332222 3478899999999887533 2221 112233445677899999999999
Q ss_pred ecCCccEEEEeeCCCeEEEEecCCCcc--------------eecc---c------------------ccceeeecccccc
Q 018858 275 FGERGKYLISGGNDKLVKVWDCSRFQG--------------VQTS---I------------------NNDLLIKNINLNK 319 (349)
Q Consensus 275 ~~~~~~~l~s~~~d~~i~vwd~~~~~~--------------~~~~---~------------------~~~~~~~~~~~~~ 319 (349)
|++++|++|+.|++|++||+..... +... . ....+..+.+|..
T Consensus 407 --p~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~ 484 (524)
T 2j04_B 407 --RLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGI 484 (524)
T ss_dssp --SSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCC
T ss_pred --CCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCc
Confidence 8999999999999999999753210 0000 0 1223445667899
Q ss_pred ceEEEEeecCC--CCcEEEeeCCCeEEEeeCC
Q 018858 320 KVNWLCTTPTE--SENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 320 ~v~~~~~~~~~--~~~l~~~~~dg~i~iw~~~ 349 (349)
.|++++|+|.. +.++++|+.||.|+||++.
T Consensus 485 ~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 485 NITCTKWNETSAGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp SCCCEEECCSTTTTTEEEEECTTSEEEEEECS
T ss_pred eEEEEECCCCCCccHHHHhhccCceEEEEEcc
Confidence 99999999942 4589999999999999974
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-39 Score=267.19 Aligned_cols=246 Identities=15% Similarity=0.262 Sum_probs=212.0
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc----EEEEeecCCCCeEEEEEecCCCEEEEEeCC
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD----VQLVTDVGNGPVTSLCFKSGNEDIIYVSSG 79 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 79 (349)
+++.+..+..|...|.+++|+|+ +++|++|+.|+.+++|++.+.+ ....+.+|...|.++.|++++. +++++.|
T Consensus 86 ~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d 163 (340)
T 1got_B 86 TTNKVHAIPLRSSWVMTCAYAPS-GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGD 163 (340)
T ss_dssp TCCEEEEEECSSSCEEEEEECTT-SSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETT
T ss_pred CCCcceEeecCCccEEEEEECCC-CCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECC
Confidence 45667888999999999999998 8999999999999999998653 4667889999999999998775 8899999
Q ss_pred CeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCC
Q 018858 80 KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKP 159 (349)
Q Consensus 80 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 159 (349)
+.|++||++++ ..+..+.+|...|.+++|+|++++|++|+.|+.|++||++++++...+. +|...|.+++|+|
T Consensus 164 ~~i~~wd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~-~h~~~v~~v~~~p--- 236 (340)
T 1got_B 164 TTCALWDIETG---QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT-GHESDINAICFFP--- 236 (340)
T ss_dssp SCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC-CCSSCEEEEEECT---
T ss_pred CcEEEEECCCC---cEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEc-CCcCCEEEEEEcC---
Confidence 99999999876 3455667788999999999999999999999999999999999999998 8999999999999
Q ss_pred CCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCC-CCCccceeeeecccc
Q 018858 160 WEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKST-TKPLKGSQSTSKVNI 238 (349)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 238 (349)
++++|++|+.||.|++||++..+........ ....+.+++|+|+|+
T Consensus 237 ---------------------------------~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 283 (340)
T 1got_B 237 ---------------------------------NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283 (340)
T ss_dssp ---------------------------------TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSS
T ss_pred ---------------------------------CCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCC
Confidence 7999999999999999999987766554432 334688999999999
Q ss_pred EEEEeeeeeec----CceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEe
Q 018858 239 RDAEMEILDQS----GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD 295 (349)
Q Consensus 239 ~~~~~~~~~~~----~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd 295 (349)
++++ +..++. ..........+.+|...|.+++|+ |++++|++|+.|+.|+|||
T Consensus 284 ~l~~-g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s---~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 284 LLLA-GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT---DDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEE-EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC---TTSSCEEEEETTSCEEEEC
T ss_pred EEEE-ECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEc---CCCCEEEEEcCCccEEecC
Confidence 9985 332222 222345566788999999999999 8999999999999999997
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-39 Score=266.78 Aligned_cols=242 Identities=13% Similarity=0.112 Sum_probs=195.2
Q ss_pred CCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEE----EeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 018858 13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQL----VTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVH 88 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 88 (349)
.|...|.+++|+|+ ..|++|+.||+|++||+++++.+. .+.+|...|.+++|+|++++|++|+.|+.|++||++
T Consensus 80 ~~~~~v~~~~~s~d--~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~ 157 (344)
T 4gqb_B 80 QTEAGVADLTWVGE--RGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA 157 (344)
T ss_dssp EESSCEEEEEEETT--TEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred ccCCCEEEEEEeCC--CeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence 36678999999997 468899999999999999887533 345799999999999999999999999999999999
Q ss_pred CCCcccceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCceEeceec-cccccceeEEEEccCCCCCCCCCC
Q 018858 89 MPASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYKSLR-AGHSSICSSVQFIPWKPWEGLPEN 166 (349)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~ 166 (349)
++ +.+..+.+|...|++++|+|++ .+|++++.|+.|++||+++++....+. ..+...+.+++|+|+
T Consensus 158 ~~---~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~--------- 225 (344)
T 4gqb_B 158 QQ---VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQ--------- 225 (344)
T ss_dssp TT---EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSS---------
T ss_pred CC---cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCC---------
Confidence 76 4556777899999999999988 578999999999999999988877664 134557889999984
Q ss_pred CCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeee
Q 018858 167 NGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEIL 246 (349)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (349)
++++|++|+.||.|++||+++++.+..+.. ....+.+++|+|++..++++++.
T Consensus 226 --------------------------~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~-h~~~v~~v~fsp~g~~~lasgs~ 278 (344)
T 4gqb_B 226 --------------------------QSEVFVFGDENGTVSLVDTKSTSCVLSSAV-HSQCVTGLVFSPHSVPFLASLSE 278 (344)
T ss_dssp --------------------------CTTEEEEEETTSEEEEEESCC--CCEEEEC-CSSCEEEEEECSSSSCCEEEEET
T ss_pred --------------------------CCcceEEeccCCcEEEEECCCCcEEEEEcC-CCCCEEEEEEccCCCeEEEEEeC
Confidence 578899999999999999998877665543 35678999999998654435554
Q ss_pred eecCc----eeeeeeeeecCCCcceEEEEEeeecCCcc-EEEEeeCCCeEEEEecCCC
Q 018858 247 DQSGG----KRLHLDYSVGGHTAAASCVAFSMFGERGK-YLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 247 ~~~~~----~~~~~~~~~~~h~~~i~~i~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~ 299 (349)
|+.+. ...+ +..+.+|.+.|++++|+ |+++ +|++++.|++|++|++.+.
T Consensus 279 D~~i~vwd~~~~~-~~~~~~H~~~V~~v~~s---p~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 279 DCSLAVLDSSLSE-LFRSQAHRDFVRDATWS---PLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp TSCEEEECTTCCE-EEEECCCSSCEEEEEEC---SSSTTEEEEEETTSCEEEEECCC-
T ss_pred CCeEEEEECCCCc-EEEEcCCCCCEEEEEEe---CCCCeEEEEEcCCCeEEEEECCCC
Confidence 44322 2222 34568899999999999 7775 6779999999999999875
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=279.10 Aligned_cols=277 Identities=12% Similarity=0.094 Sum_probs=223.5
Q ss_pred eeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccce
Q 018858 17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPL 96 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 96 (349)
.+++++|+|+ +++|++++.||.|++||+.+++....+..| ..+....|+|++++|++++.||.|++||++++ ...
T Consensus 58 ~~~~~~~s~~-g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~ 132 (420)
T 3vl1_A 58 AGKGNTFEKV-GSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN---LQR 132 (420)
T ss_dssp CCTTCEEEEE-ETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSC---EEE
T ss_pred cccceeeeec-CCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCc---cee
Confidence 3557899999 899999999999999999877665555555 44455578999999999999999999999865 344
Q ss_pred eeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCC
Q 018858 97 ESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNP 176 (349)
Q Consensus 97 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (349)
..+..|...|++++|+|++++|++++.|+.|++||+++++.+..+. +|...|.+++|+|
T Consensus 133 ~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~-------------------- 191 (420)
T 3vl1_A 133 EIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI-GHRATVTDIAIID-------------------- 191 (420)
T ss_dssp EETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEE-CCSSCEEEEEEET--------------------
T ss_pred eecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEc-CCCCcEEEEEEcC--------------------
Confidence 5566788999999999999999999999999999999999888898 8999999999999
Q ss_pred ceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCC-----------------------CCCccceeee
Q 018858 177 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKST-----------------------TKPLKGSQST 233 (349)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----------------------~~~~~~~~~~ 233 (349)
++++|++++.||.|++||+++++........ ....+..++|
T Consensus 192 ----------------~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~ 255 (420)
T 3vl1_A 192 ----------------RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF 255 (420)
T ss_dssp ----------------TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCS
T ss_pred ----------------CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEE
Confidence 7899999999999999999988776655432 1355667888
Q ss_pred eccccEEEEeeeeeecC----ceeeeeeee-ecCCCcceEEEEEeeecCCcc-EEEEeeCCCeEEEEecCCCcceecccc
Q 018858 234 SKVNIRDAEMEILDQSG----GKRLHLDYS-VGGHTAAASCVAFSMFGERGK-YLISGGNDKLVKVWDCSRFQGVQTSIN 307 (349)
Q Consensus 234 ~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~h~~~i~~i~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~ 307 (349)
+|+++++++ +..++.+ ......... ...|...|.+++|+ |+++ +|++++.||.|++||+++++
T Consensus 256 s~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~l~~g~~dg~i~vwd~~~~~------- 324 (420)
T 3vl1_A 256 GTYGKYVIA-GHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVD---GNNANYIYAGYENGMLAQWDLRSPE------- 324 (420)
T ss_dssp SCTTEEEEE-EETTSCEEEEETTTCCEEEEECCTTSSCEEEEEEC---SSCTTEEEEEETTSEEEEEETTCTT-------
T ss_pred cCCCCEEEE-EcCCCeEEEEECCCCceeEEcccccCCCceeEEEe---CCCCCEEEEEeCCCeEEEEEcCCCc-------
Confidence 999999985 3323221 112222223 34588899999999 8888 99999999999999999864
Q ss_pred cceeeeccc-cccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 308 NDLLIKNIN-LNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 308 ~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
..+..+.. |...+.++.+ + ++++|++++.||.|++|+++
T Consensus 325 -~~~~~~~~~~~~~v~~~~~-~-~~~~l~s~~~d~~v~iw~~~ 364 (420)
T 3vl1_A 325 -CPVGEFLINEGTPINNVYF-A-AGALFVSSGFDTSIKLDIIS 364 (420)
T ss_dssp -SCSEEEEESTTSCEEEEEE-E-TTEEEEEETTTEEEEEEEEC
T ss_pred -CchhhhhccCCCCceEEEe-C-CCCEEEEecCCccEEEEecc
Confidence 22334444 6777888755 5 66799999999999999963
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-38 Score=268.22 Aligned_cols=253 Identities=14% Similarity=0.192 Sum_probs=215.7
Q ss_pred cCCCCeeeeC-CceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeE
Q 018858 4 AEAKPRRLRG-HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEV 82 (349)
Q Consensus 4 ~~~~~~~l~~-h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 82 (349)
+++..+.+.. |...|++++|+|+ +++|++|+.||.|++||+.+++.+..+..|...|.+++|+ ++++++++.||.|
T Consensus 122 ~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i 198 (401)
T 4aez_A 122 SGSVSALAETDESTYVASVKWSHD-GSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAI 198 (401)
T ss_dssp TCCEEEEEECCTTCCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEE
T ss_pred CCcEeEeeecCCCCCEEEEEECCC-CCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCE
Confidence 3445555555 8899999999998 8999999999999999999999999999999999999994 6799999999999
Q ss_pred EEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCC
Q 018858 83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEG 162 (349)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 162 (349)
++||++... ..+..+..|...|.+++|+|++++|++|+.|+.|++||+++++.+..+. .|...|.+++|+|+
T Consensus 199 ~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~p~----- 270 (401)
T 4aez_A 199 HHHDVRIAN--HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKT-NHNAAVKAVAWCPW----- 270 (401)
T ss_dssp EEEETTSSS--CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEEC-CCSSCCCEEEECTT-----
T ss_pred EEEecccCc--ceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEec-CCcceEEEEEECCC-----
Confidence 999998532 3455566788999999999999999999999999999999999888888 89999999999994
Q ss_pred CCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEc--CCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEE
Q 018858 163 LPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK--GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRD 240 (349)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (349)
...++++++ .|+.|++||++++
T Consensus 271 ------------------------------~~~ll~~~~gs~d~~i~i~d~~~~-------------------------- 294 (401)
T 4aez_A 271 ------------------------------QSNLLATGGGTMDKQIHFWNAATG-------------------------- 294 (401)
T ss_dssp ------------------------------STTEEEEECCTTTCEEEEEETTTC--------------------------
T ss_pred ------------------------------CCCEEEEecCCCCCEEEEEECCCC--------------------------
Confidence 346777765 7999999999874
Q ss_pred EEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEE--eeCCCeEEEEecCCCcceecccccceeeeccccc
Q 018858 241 AEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLIS--GGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLN 318 (349)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s--~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 318 (349)
..+..+. +...|.++.|+ |+++++++ |+.||.|++||+.++.. .......+|.
T Consensus 295 --------------~~~~~~~-~~~~v~~~~~s---~~~~~l~~~~g~~dg~i~v~~~~~~~~-------~~~~~~~~h~ 349 (401)
T 4aez_A 295 --------------ARVNTVD-AGSQVTSLIWS---PHSKEIMSTHGFPDNNLSIWSYSSSGL-------TKQVDIPAHD 349 (401)
T ss_dssp --------------CEEEEEE-CSSCEEEEEEC---SSSSEEEEEECTTTCEEEEEEEETTEE-------EEEEEEECCS
T ss_pred --------------CEEEEEe-CCCcEEEEEEC---CCCCeEEEEeecCCCcEEEEecCCccc-------eeEEEecCCC
Confidence 2333343 55689999999 89999998 44899999999988632 2333456899
Q ss_pred cceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 319 KKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 319 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
..|.+++|+| ++++|++++.||.|++|++.
T Consensus 350 ~~v~~~~~s~-dg~~l~s~~~dg~i~iw~~~ 379 (401)
T 4aez_A 350 TRVLYSALSP-DGRILSTAASDENLKFWRVY 379 (401)
T ss_dssp SCCCEEEECT-TSSEEEEECTTSEEEEEECC
T ss_pred CCEEEEEECC-CCCEEEEEeCCCcEEEEECC
Confidence 9999999988 88899999999999999974
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-38 Score=264.41 Aligned_cols=247 Identities=18% Similarity=0.197 Sum_probs=203.4
Q ss_pred eCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc--EEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 018858 12 RGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD--VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM 89 (349)
Q Consensus 12 ~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 89 (349)
.+|.+.|.+++|+|+ +++|++|+.|+.+++||+..+. .+..+.+|...|.+++|+|++++|++++.|+.|++||+++
T Consensus 58 ~~h~~~v~~~~~sp~-g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~ 136 (345)
T 3fm0_A 58 EGHQRTVRKVAWSPC-GNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDE 136 (345)
T ss_dssp SSCSSCEEEEEECTT-SSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECT
T ss_pred cccCCcEEEEEECCC-CCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCC
Confidence 689999999999998 8999999999999999988764 4678899999999999999999999999999999999987
Q ss_pred CCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCce--EeceeccccccceeEEEEccCCCCCCCCCCC
Q 018858 90 PASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC--LYKSLRAGHSSICSSVQFIPWKPWEGLPENN 167 (349)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 167 (349)
+.....+..+..|...|.+++|+|++++|++++.|+.|++||+++++ +...+. +|...|.+++|+|
T Consensus 137 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~-~h~~~v~~l~~sp----------- 204 (345)
T 3fm0_A 137 EDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLE-GHESTVWSLAFDP----------- 204 (345)
T ss_dssp TSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECT-----------
T ss_pred CCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEec-CCCCceEEEEECC-----------
Confidence 66556667778888999999999999999999999999999998765 446777 8999999999999
Q ss_pred CCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCce---------------eeeecCCCCCCccceee
Q 018858 168 GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL---------------NISRSKSTTKPLKGSQS 232 (349)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---------------~~~~~~~~~~~~~~~~~ 232 (349)
++++|++++.|++|++||..... ............+..++
T Consensus 205 -------------------------~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 259 (345)
T 3fm0_A 205 -------------------------SGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIA 259 (345)
T ss_dssp -------------------------TSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEE
T ss_pred -------------------------CCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEE
Confidence 89999999999999999974321 12223333556788999
Q ss_pred eeccccEEEEeeeeeecCce------------ee-eeeeeecCCCcceEEEEEeeecCCc-cEEEEeeCCCeEEEEecCC
Q 018858 233 TSKVNIRDAEMEILDQSGGK------------RL-HLDYSVGGHTAAASCVAFSMFGERG-KYLISGGNDKLVKVWDCSR 298 (349)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~------------~~-~~~~~~~~h~~~i~~i~~~~~~~~~-~~l~s~~~d~~i~vwd~~~ 298 (349)
|+|++..+++.+ .|..+.. .. .......+|...|++++|+ |++ .+|++|+.||.|++|++.+
T Consensus 260 ~~~~~~~l~s~~-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~---p~~~~~laS~s~Dg~v~~W~~~~ 335 (345)
T 3fm0_A 260 WCQLTGALATAC-GDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWN---PKEPGLLASCSDDGEVAFWKYQR 335 (345)
T ss_dssp ECTTTCCEEEEE-TTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEEC---SSSTTEEEEEETTSCEEEEEECC
T ss_pred EecCCCEEEEEe-CCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEe---CCCceEEEEcCCCCcEEEEEecC
Confidence 999999888532 2221110 01 1123346899999999999 776 5999999999999999998
Q ss_pred Cc
Q 018858 299 FQ 300 (349)
Q Consensus 299 ~~ 300 (349)
.+
T Consensus 336 ~~ 337 (345)
T 3fm0_A 336 PE 337 (345)
T ss_dssp --
T ss_pred CC
Confidence 64
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-38 Score=269.41 Aligned_cols=275 Identities=16% Similarity=0.200 Sum_probs=219.7
Q ss_pred cCCCCeeeeCCceeeeEEEEec-CCCceEEEeCCCCcEEEEECCCCcEEEEee-------------cCCCCeEEEEEec-
Q 018858 4 AEAKPRRLRGHKATATCCIASR-DRPGFVASSGEDGCICWFDLRSKDVQLVTD-------------VGNGPVTSLCFKS- 68 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~-~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~-------------~~~~~v~~~~~~~- 68 (349)
..+..+.+++|.+.|++++|+| + +++|++|+.||.|++||+.+++....+. +|...|.+++|+|
T Consensus 32 ~~~~~~~~~~h~~~v~~~~~s~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 110 (408)
T 4a11_B 32 LNKDRDVERIHGGGINTLDIEPVE-GRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPH 110 (408)
T ss_dssp ECTTEEECCCCSSCEEEEEECTTT-CCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTT
T ss_pred cCcceeeeeccCCcEEEEEEecCC-CCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccC
Confidence 3456778889999999999999 7 8999999999999999999876533332 4899999999999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCC---CEEEEEcCCCcEEEEEcCCceEeceecccc
Q 018858 69 GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS---SFLACADDGGDVKIIDIRQHCLYKSLRAGH 145 (349)
Q Consensus 69 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 145 (349)
++++|++++.||.|++||+++++....+. +...+.++.++|.+ .++++++.++.|++||+++++.+..+. .|
T Consensus 111 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~ 185 (408)
T 4a11_B 111 DTGMFTSSSFDKTLKVWDTNTLQTADVFN----FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ-GH 185 (408)
T ss_dssp CTTCEEEEETTSEEEEEETTTTEEEEEEE----CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEEC-CC
T ss_pred CCcEEEEEeCCCeEEEeeCCCCccceecc----CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeec-CC
Confidence 78899999999999999999764333322 45778999998854 599999999999999999999888888 89
Q ss_pred ccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCc-EEEEEcCCCeEEEEEccCceeee-ecCCC
Q 018858 146 SSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK-ICVVAKGDGVVDVINIESELNIS-RSKST 223 (349)
Q Consensus 146 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~-~~~~~ 223 (349)
...|.+++|+| ++. +|++++.||.|++||++...... .....
T Consensus 186 ~~~v~~~~~~~------------------------------------~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~ 229 (408)
T 4a11_B 186 RQEILAVSWSP------------------------------------RYDYILATASADSRVKLWDVRRASGCLITLDQH 229 (408)
T ss_dssp CSCEEEEEECS------------------------------------SCTTEEEEEETTSCEEEEETTCSSCCSEECCTT
T ss_pred CCcEEEEEECC------------------------------------CCCcEEEEEcCCCcEEEEECCCCCccccccccc
Confidence 99999999999 566 68999999999999998753211 11100
Q ss_pred CCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCccee
Q 018858 224 TKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ 303 (349)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 303 (349)
.. ............|...|.+++|+ |++++|++++.|+.|++||+.+++...
T Consensus 230 ~~-------------------------~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~dg~i~vwd~~~~~~~~ 281 (408)
T 4a11_B 230 NG-------------------------KKSQAVESANTAHNGKVNGLCFT---SDGLHLLTVGTDNRMRLWNSSNGENTL 281 (408)
T ss_dssp TT-------------------------CSCCCTTTSSCSCSSCEEEEEEC---TTSSEEEEEETTSCEEEEETTTCCBCC
T ss_pred cc-------------------------ccceeeccccccccCceeEEEEc---CCCCEEEEecCCCeEEEEECCCCccce
Confidence 00 00012223446788999999999 899999999999999999998765321
Q ss_pred cc--------------------------------------cccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEE
Q 018858 304 TS--------------------------------------INNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKV 345 (349)
Q Consensus 304 ~~--------------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 345 (349)
.. .....+..+.+|...|++++|+| ++++|++++.||.|++
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~i 360 (408)
T 4a11_B 282 VNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS-NFQELYSGSRDCNILA 360 (408)
T ss_dssp CCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEE
T ss_pred eccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcC-CCCEEEEECCCCeEEE
Confidence 10 12245566678999999999988 8889999999999999
Q ss_pred eeCC
Q 018858 346 YSIS 349 (349)
Q Consensus 346 w~~~ 349 (349)
|+++
T Consensus 361 w~~~ 364 (408)
T 4a11_B 361 WVPS 364 (408)
T ss_dssp EEEC
T ss_pred EeCC
Confidence 9974
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-38 Score=259.36 Aligned_cols=251 Identities=14% Similarity=0.123 Sum_probs=192.8
Q ss_pred CCeee-eC-CceeeeEEEEecCCCceEEEeCCCCcEEEEECCC-------CcEEEEeecCCCCeEEEEEecCCCEEEEEe
Q 018858 7 KPRRL-RG-HKATATCCIASRDRPGFVASSGEDGCICWFDLRS-------KDVQLVTDVGNGPVTSLCFKSGNEDIIYVS 77 (349)
Q Consensus 7 ~~~~l-~~-h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 77 (349)
....+ .+ |.+.|.+++|+|+ +++|++|+.|++|++||++. .+.+..+.+|...|.+++|+|++++|++++
T Consensus 48 ~~~~~~~~~h~~~v~~v~~sp~-~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s 126 (330)
T 2hes_X 48 LIDVLDETAHKKAIRSVAWRPH-TSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCS 126 (330)
T ss_dssp EEEEECTTCCCSCEEEEEECTT-SSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEE
T ss_pred EEEEEecCCccCCEEEEEECCC-CCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEe
Confidence 34445 34 9999999999998 89999999999999999853 345678889999999999999999999999
Q ss_pred CCCeEEEEEccC-CCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCc--eEeceeccccccceeEEEE
Q 018858 78 SGKEVKSFDVHM-PASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQH--CLYKSLRAGHSSICSSVQF 154 (349)
Q Consensus 78 ~dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~v~~~~~ 154 (349)
.|+.|++||++. +.....+..+..|...|.+++|+|++.+|++++.|+.|++||+.++ +++..+. +|...|.+++|
T Consensus 127 ~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~-~h~~~v~~~~~ 205 (330)
T 2hes_X 127 RDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLN-GHEGTVWSSDF 205 (330)
T ss_dssp TTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEE
T ss_pred CCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEcc-CCCCcEEEEEe
Confidence 999999999953 3334556677889999999999999999999999999999998865 6778888 89999999999
Q ss_pred ccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCc--------eeeeecCCCCCC
Q 018858 155 IPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE--------LNISRSKSTTKP 226 (349)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--------~~~~~~~~~~~~ 226 (349)
+|++ .+..|++|+.|++|++||++.. ............
T Consensus 206 ~~~~----------------------------------~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~ 251 (330)
T 2hes_X 206 DKTE----------------------------------GVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKR 251 (330)
T ss_dssp CCSS----------------------------------SSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSS
T ss_pred cCCC----------------------------------CeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccccccc
Confidence 9920 2678999999999999999764 233333344567
Q ss_pred ccceeeeeccccEEEEeeeeeecCce------eeeee-eeecCCCc-ceEEEEEeeecC--CccEEEEeeCCCeEEEEec
Q 018858 227 LKGSQSTSKVNIRDAEMEILDQSGGK------RLHLD-YSVGGHTA-AASCVAFSMFGE--RGKYLISGGNDKLVKVWDC 296 (349)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~h~~-~i~~i~~~~~~~--~~~~l~s~~~d~~i~vwd~ 296 (349)
.+..++|++++ .+++ +..|+.+.. ..... ....+|.. .|++++|+ | ++++|++|+.||.|++||+
T Consensus 252 ~v~~v~~s~~~-~l~s-~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~---~~~~~~~las~s~Dg~v~~W~~ 326 (330)
T 2hes_X 252 QVYNVAWGFNG-LIAS-VGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWL---ELNGKTILATGGDDGIVNFWSL 326 (330)
T ss_dssp CEEEEEECTTS-CEEE-EETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC--------CCEEEEETTSEEEEEEC
T ss_pred ceEEEEEcCCC-EEEE-EeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEe---cCCCceEEEEecCCCcEEEEEe
Confidence 88999999776 4443 333332211 11222 23456876 89999999 6 6889999999999999998
Q ss_pred CC
Q 018858 297 SR 298 (349)
Q Consensus 297 ~~ 298 (349)
+.
T Consensus 327 ~~ 328 (330)
T 2hes_X 327 EK 328 (330)
T ss_dssp --
T ss_pred cc
Confidence 75
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-38 Score=260.93 Aligned_cols=280 Identities=13% Similarity=0.119 Sum_probs=229.4
Q ss_pred CceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcc
Q 018858 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASW 93 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (349)
|.++|.+++|+|+ +++++++..++.+..|.............|...|.+++|+|++++|++++ ||.|++||+.+++..
T Consensus 8 ~~~~v~~~~~s~d-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~ 85 (337)
T 1gxr_A 8 GSKPAYSFHVTAD-GQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK 85 (337)
T ss_dssp EEEECCEEEECSS-SCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC
T ss_pred cCCceeEEEECCC-CCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCce
Confidence 5678999999999 89999888888887776665544445557999999999999999999999 999999999876554
Q ss_pred cceeecc--CcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCce--EeceeccccccceeEEEEccCCCCCCCCCCCCC
Q 018858 94 RPLESYN--YNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC--LYKSLRAGHSSICSSVQFIPWKPWEGLPENNGN 169 (349)
Q Consensus 94 ~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 169 (349)
..+..+. .|...+.+++|+|++++|++++.|+.|++||+++++ ....+. .|...+.+++|+|
T Consensus 86 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~i~~~~~~~------------- 151 (337)
T 1gxr_A 86 SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELT-SSAPACYALAISP------------- 151 (337)
T ss_dssp SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEE-CSSSCEEEEEECT-------------
T ss_pred eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecc-cCCCceEEEEECC-------------
Confidence 4444433 577899999999999999999999999999999876 556666 7888999999999
Q ss_pred CccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeec
Q 018858 170 AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS 249 (349)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (349)
++++|++++.||.|++||+++++....... ....+..++|+|+++.+++.+ .++.
T Consensus 152 -----------------------~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~-~dg~ 206 (337)
T 1gxr_A 152 -----------------------DSKVCFSCCSDGNIAVWDLHNQTLVRQFQG-HTDGASCIDISNDGTKLWTGG-LDNT 206 (337)
T ss_dssp -----------------------TSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEE-TTSE
T ss_pred -----------------------CCCEEEEEeCCCcEEEEeCCCCceeeeeec-ccCceEEEEECCCCCEEEEEe-cCCc
Confidence 789999999999999999998876665543 456789999999999998633 2221
Q ss_pred ----CceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEE
Q 018858 250 ----GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLC 325 (349)
Q Consensus 250 ----~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 325 (349)
..........+ .|...+.+++|+ |+++++++++.|+.|++||+.+. . ......|...|.+++
T Consensus 207 i~~~d~~~~~~~~~~-~~~~~v~~~~~s---~~~~~l~~~~~~~~i~~~~~~~~---------~-~~~~~~~~~~v~~~~ 272 (337)
T 1gxr_A 207 VRSWDLREGRQLQQH-DFTSQIFSLGYC---PTGEWLAVGMESSNVEVLHVNKP---------D-KYQLHLHESCVLSLK 272 (337)
T ss_dssp EEEEETTTTEEEEEE-ECSSCEEEEEEC---TTSSEEEEEETTSCEEEEETTSS---------C-EEEECCCSSCEEEEE
T ss_pred EEEEECCCCceEeee-cCCCceEEEEEC---CCCCEEEEEcCCCcEEEEECCCC---------C-eEEEcCCccceeEEE
Confidence 11122333333 367789999999 89999999999999999999986 2 335678999999999
Q ss_pred eecCCCCcEEEeeCCCeEEEeeCC
Q 018858 326 TTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 326 ~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
|+| ++++|++++.||.|++|+++
T Consensus 273 ~~~-~~~~l~~~~~dg~i~~~~~~ 295 (337)
T 1gxr_A 273 FAY-CGKWFVSTGKDNLLNAWRTP 295 (337)
T ss_dssp ECT-TSSEEEEEETTSEEEEEETT
T ss_pred ECC-CCCEEEEecCCCcEEEEECC
Confidence 988 88899999999999999974
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-38 Score=264.56 Aligned_cols=273 Identities=13% Similarity=0.121 Sum_probs=225.0
Q ss_pred CeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc---EEEEeecCCCCeEEEEEecCCC-EEEEEeCCCeEE
Q 018858 8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD---VQLVTDVGNGPVTSLCFKSGNE-DIIYVSSGKEVK 83 (349)
Q Consensus 8 ~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~ 83 (349)
.....+|.+.|++++|+|+ +++|++++.||.|++||+.+++ ....+..|...|.+++|+|+++ +|++++.||.|+
T Consensus 4 ~~~~~~h~~~v~~~~~s~~-~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 4 VQIEQAPKDYISDIKIIPS-KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp EECSSCCSSCEEEEEEEGG-GTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred eecccCCCCcEEEEEEcCC-CCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence 3445689999999999998 8999999999999999998877 3455568999999999999999 999999999999
Q ss_pred EEEc-cCCCcccceeeccC--cccceEEEEEccCCCEEEEEcCCCcEEEEEcCC---------ceEeceeccccccceeE
Q 018858 84 SFDV-HMPASWRPLESYNY--NKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ---------HCLYKSLRAGHSSICSS 151 (349)
Q Consensus 84 iwd~-~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~~~v~~ 151 (349)
+||+ .+++ ...+.. |...|.+++|+| +++|++++.|+.|++||+++ ++++..+. +...+.+
T Consensus 83 ~wd~~~~~~----~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~ 155 (342)
T 1yfq_A 83 KVDLIGSPS----FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK--VKNKIFT 155 (342)
T ss_dssp EECSSSSSS----EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS--SCCCEEE
T ss_pred EEEeccCCc----eEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe--eCCceEE
Confidence 9999 7653 245566 889999999999 99999999999999999987 77666666 7788999
Q ss_pred EEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC-cee-eeecCCCCCCccc
Q 018858 152 VQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES-ELN-ISRSKSTTKPLKG 229 (349)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~-~~~~~~~~~~~~~ 229 (349)
++|+| ++ +++++.|+.|++||+++ ... ...........+.
T Consensus 156 ~~~~~------------------------------------~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~ 197 (342)
T 1yfq_A 156 MDTNS------------------------------------SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIR 197 (342)
T ss_dssp EEECS------------------------------------SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEE
T ss_pred EEecC------------------------------------Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCcee
Confidence 99988 44 89999999999999997 443 2233334566789
Q ss_pred eeeeec-cccEEEEeeeeeecCc----ee------eeeeeeecCCCc---------ceEEEEEeeecCCccEEEEeeCCC
Q 018858 230 SQSTSK-VNIRDAEMEILDQSGG----KR------LHLDYSVGGHTA---------AASCVAFSMFGERGKYLISGGNDK 289 (349)
Q Consensus 230 ~~~~~~-~~~~~~~~~~~~~~~~----~~------~~~~~~~~~h~~---------~i~~i~~~~~~~~~~~l~s~~~d~ 289 (349)
+++|+| +++++++.+ .++.+. .. ......+..|.. .|.+++|+ |++++|++++.||
T Consensus 198 ~i~~~~~~~~~l~~~~-~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s---~~~~~l~~~~~dg 273 (342)
T 1yfq_A 198 DVALLPKEQEGYACSS-IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFS---PRHKFLYTAGSDG 273 (342)
T ss_dssp EEEECSGGGCEEEEEE-TTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEEC---TTTCCEEEEETTS
T ss_pred EEEECCCCCCEEEEEe-cCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEc---CCCCEEEEecCCc
Confidence 999999 999988633 222111 11 134445666644 99999999 8999999999999
Q ss_pred eEEEEecCCCcceecccccceeeecccc-ccceEEEEeecCCCCcEEEeeCCCe
Q 018858 290 LVKVWDCSRFQGVQTSINNDLLIKNINL-NKKVNWLCTTPTESENLVVCDTSKV 342 (349)
Q Consensus 290 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~ 342 (349)
.|++||+.++ ..+..+.+| ...|.+++ | ++++|++++.||.
T Consensus 274 ~i~vwd~~~~---------~~~~~~~~~h~~~v~~~~--~-~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 274 IISCWNLQTR---------KKIKNFAKFNEDSVVKIA--C-SDNILCLATSDDT 315 (342)
T ss_dssp CEEEEETTTT---------EEEEECCCCSSSEEEEEE--E-CSSEEEEEEECTH
T ss_pred eEEEEcCccH---------hHhhhhhcccCCCceEec--C-CCCeEEEEecCCc
Confidence 9999999987 666777888 99999998 5 8889999999998
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=273.66 Aligned_cols=261 Identities=14% Similarity=0.189 Sum_probs=217.7
Q ss_pred eeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCC----------CcEEEEeecCCCCeEEEEEecCCC-EEEEEe
Q 018858 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRS----------KDVQLVTDVGNGPVTSLCFKSGNE-DIIYVS 77 (349)
Q Consensus 9 ~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~----------~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~ 77 (349)
..+..|.+.|++++|+|+++.+|++++.||.|++||+.+ .+.+..+.+|...|.+++|+|++. +|++++
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 445679999999999997578999999999999999976 566788889999999999999988 999999
Q ss_pred CCCeEEEEEccCCCcc----cceeeccCcccceEEEEEcc-CCCEEEEEcCCCcEEEEEcCCc---eEeceeccccccce
Q 018858 78 SGKEVKSFDVHMPASW----RPLESYNYNKEEINQIVCNP-KSSFLACADDGGDVKIIDIRQH---CLYKSLRAGHSSIC 149 (349)
Q Consensus 78 ~dg~i~iwd~~~~~~~----~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~v 149 (349)
.||.|++|++..+... .....+..|...|.+++|+| ++.+|++++.||.|++||++++ +.+..+. .|...|
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~v 280 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD-AHTAEV 280 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE-CCSSCE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee-cCCCCe
Confidence 9999999999874321 22445667888999999999 6789999999999999999976 5666777 789999
Q ss_pred eEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCc-EEEEEcCCCeEEEEEccCceeeeecCCCCCCcc
Q 018858 150 SSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK-ICVVAKGDGVVDVINIESELNISRSKSTTKPLK 228 (349)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 228 (349)
.+++|+| ++. +|++|+.||.|++||++...
T Consensus 281 ~~i~~~p------------------------------------~~~~~l~tg~~dg~v~vwd~~~~~------------- 311 (430)
T 2xyi_A 281 NCLSFNP------------------------------------YSEFILATGSADKTVALWDLRNLK------------- 311 (430)
T ss_dssp EEEEECS------------------------------------SCTTEEEEEETTSEEEEEETTCTT-------------
T ss_pred EEEEeCC------------------------------------CCCCEEEEEeCCCeEEEEeCCCCC-------------
Confidence 9999999 554 78999999999999998631
Q ss_pred ceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCcc-EEEEeeCCCeEEEEecCCCcceec---
Q 018858 229 GSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK-YLISGGNDKLVKVWDCSRFQGVQT--- 304 (349)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~--- 304 (349)
..+..+..|...|.++.|+ |+++ +|++++.|+.|+|||+........
T Consensus 312 --------------------------~~~~~~~~h~~~v~~i~~s---p~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 362 (430)
T 2xyi_A 312 --------------------------LKLHSFESHKDEIFQVQWS---PHNETILASSGTDRRLHVWDLSKIGEEQSTED 362 (430)
T ss_dssp --------------------------SCSEEEECCSSCEEEEEEC---SSCTTEEEEEETTSCCEEEEGGGTTCCCCHHH
T ss_pred --------------------------CCeEEeecCCCCEEEEEEC---CCCCCEEEEEeCCCcEEEEeCCCCccccCccc
Confidence 3456677899999999999 7774 799999999999999987432111
Q ss_pred --ccccceeeeccccccceEEEEeecCCCC-cEEEeeCCCeEEEeeCC
Q 018858 305 --SINNDLLIKNINLNKKVNWLCTTPTESE-NLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 305 --~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~iw~~~ 349 (349)
.....++....+|...|++++|+| ++. +|++++.||.|++|+++
T Consensus 363 ~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 363 AEDGPPELLFIHGGHTAKISDFSWNP-NEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp HHHCCTTEEEECCCCSSCEEEEEECS-SSTTEEEEEETTSEEEEEEEC
T ss_pred cccCCcceEEEcCCCCCCceEEEECC-CCCCEEEEEECCCCEEEeEcc
Confidence 111256677788999999999998 555 89999999999999974
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-39 Score=292.91 Aligned_cols=272 Identities=16% Similarity=0.191 Sum_probs=216.8
Q ss_pred CeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECC--CCcEEEEeecCCCCeEEEEEecC--CCEEEEEeCCCeEE
Q 018858 8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLR--SKDVQLVTDVGNGPVTSLCFKSG--NEDIIYVSSGKEVK 83 (349)
Q Consensus 8 ~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~ 83 (349)
+..+.+|.+.|++++|+|+ +++|++|+.||.|++||+. +++.+..+.+|..+|.+++|+|+ +++|++|+.||.|+
T Consensus 2 ~~~l~gH~~~V~~l~~s~d-g~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~ 80 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYY-GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80 (753)
T ss_dssp ------CCCCEEEECCCSS-SCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred eeecccCcceeEEEEECCC-CCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence 4678999999999999998 8999999999999999998 45667888999999999999988 99999999999999
Q ss_pred EEEccCCCcccceeeccCcccceEEEEEccC--CCEEEEEcCCCcEEEEEcCCce--EeceeccccccceeEEEEccCCC
Q 018858 84 SFDVHMPASWRPLESYNYNKEEINQIVCNPK--SSFLACADDGGDVKIIDIRQHC--LYKSLRAGHSSICSSVQFIPWKP 159 (349)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~ 159 (349)
+||+.+++ ...+..+..|...|++++|+|+ ++++++|+.||.|++||++++. ....+. .|...|.+++|+|...
T Consensus 81 vwd~~~~~-~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~-~~~~~v~~l~~~p~~~ 158 (753)
T 3jro_A 81 IWKEENGR-WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPATI 158 (753)
T ss_dssp EEEEETTE-EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEE-CCSSCEEEEEECCCC-
T ss_pred EEECCCCc-ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEee-cCCCceEEEEecCccc
Confidence 99998753 2355566778899999999999 9999999999999999998763 333455 7889999999998210
Q ss_pred CCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccE
Q 018858 160 WEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIR 239 (349)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (349)
-. ...... .+++.++++|+.||.|++||++++
T Consensus 159 ~~-----------------~~~~~~------~~d~~~l~sgs~dg~I~iwd~~~~------------------------- 190 (753)
T 3jro_A 159 EE-----------------DGEHNG------TKESRKFVTGGADNLVKIWKYNSD------------------------- 190 (753)
T ss_dssp -------------------------------CGGGCCEEEEETTSCEEEEEEETT-------------------------
T ss_pred cc-----------------cccccc------CCCCCEEEEEECCCeEEEEeccCC-------------------------
Confidence 00 000000 114789999999999999999864
Q ss_pred EEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCC---ccEEEEeeCCCeEEEEecCCCcceecccccceeeeccc
Q 018858 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGER---GKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNIN 316 (349)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~---~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 316 (349)
.........+.+|...|++++|+ |+ +++|++++.||.|++||+.++..... ........
T Consensus 191 -----------~~~~~~~~~~~~h~~~V~~l~~s---p~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~----~~~~~~~~ 252 (753)
T 3jro_A 191 -----------AQTYVLESTLEGHSDWVRDVAWS---PTVLLRSYLASVSQDRTCIIWTQDNEQGPWK----KTLLKEEK 252 (753)
T ss_dssp -----------TTEEEEEEEECCCSSCEEEEEEC---CCCSSSEEEEEEESSSCEEEEEESSSSSCCB----CCBSSSSC
T ss_pred -----------cccceeeeeecCCCCcEEEEEec---cCCCCCCEEEEEecCCEEEEecCCCCCCcce----eEEeccCC
Confidence 11224556778899999999999 78 89999999999999999998632110 23334456
Q ss_pred cccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 317 LNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 317 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
|...|++++|+| ++++|++++.||.|++|+++
T Consensus 253 ~~~~v~~l~~sp-dg~~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 253 FPDVLWRASWSL-SGNVLALSGGDNKVTLWKEN 284 (753)
T ss_dssp CSSCCCCEEECT-TTCCEEEECSSSCEECCBCC
T ss_pred CCCceEEEEEcC-CCCEEEEEcCCCEEEEEecC
Confidence 889999999988 88899999999999999974
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-38 Score=263.29 Aligned_cols=248 Identities=15% Similarity=0.154 Sum_probs=200.0
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 85 (349)
...+.+.+|...|.+++|+|+ +.++++|+.|++|++||+++++.+..+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 67 ~~~~~l~~h~~~V~~~~~~~~-~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~w 145 (343)
T 2xzm_R 67 IPHKALTGHNHFVSDLALSQE-NCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLW 145 (343)
T ss_dssp EEEEEECCCSSCEEEEEECSS-TTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEE
T ss_pred cccchhccCCCceEEEEECCC-CCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEE
Confidence 345778999999999999998 8999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCcccceeeccCcccceEEEEEccCC----------CEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEc
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPKS----------SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFI 155 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 155 (349)
|+... ..........|...+.+++|+|++ .+|++++.|+.|++|| ...+....+. .|...|.+++|+
T Consensus 146 d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~-~h~~~v~~~~~s 222 (343)
T 2xzm_R 146 NILGE-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFK-AHESNVNHLSIS 222 (343)
T ss_dssp ESSSC-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEE-CCSSCEEEEEEC
T ss_pred eccCC-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEc-CccccceEEEEC
Confidence 99732 222223334677889999999986 6899999999999999 4556667777 899999999999
Q ss_pred cCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCcee-eeecCCCCCCccceeeee
Q 018858 156 PWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN-ISRSKSTTKPLKGSQSTS 234 (349)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~ 234 (349)
| ++++|++|+.||.|++||++.... ..... ....+..++|+
T Consensus 223 ~------------------------------------~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~--~~~~v~~v~~s 264 (343)
T 2xzm_R 223 P------------------------------------NGKYIATGGKDKKLLIWDILNLTYPQREFD--AGSTINQIAFN 264 (343)
T ss_dssp T------------------------------------TSSEEEEEETTCEEEEEESSCCSSCSEEEE--CSSCEEEEEEC
T ss_pred C------------------------------------CCCEEEEEcCCCeEEEEECCCCcccceeec--CCCcEEEEEEC
Confidence 9 899999999999999999954322 22221 23458899999
Q ss_pred ccccEEEEeee-----eeecCceeeeeeeee-----------cCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCC
Q 018858 235 KVNIRDAEMEI-----LDQSGGKRLHLDYSV-----------GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR 298 (349)
Q Consensus 235 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~-----------~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 298 (349)
|++.++++... ++...... .....+ .+|...|.+++|+ |++++|++|+.||.|++|++++
T Consensus 265 p~~~~la~~~d~~v~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---p~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 265 PKLQWVAVGTDQGVKIFNLMTQSK-APVCTIEAEPITKAEGQKGKNPQCTSLAWN---ALGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp SSSCEEEEEESSCEEEEESSSCCS-CSEEECCCCSGGGBTTBCCSCCCEEEEEEC---SSSCCEEEEETTSEEEEEEEEE
T ss_pred CCCCEEEEECCCCEEEEEeCCCCC-CceEEeecCcchhhhhhcCCCCceEEEEEC---CCCCeEEEecCCceEEEEEEEc
Confidence 99998874221 11110000 000112 2688889999999 8999999999999999999876
Q ss_pred C
Q 018858 299 F 299 (349)
Q Consensus 299 ~ 299 (349)
+
T Consensus 341 g 341 (343)
T 2xzm_R 341 S 341 (343)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-37 Score=276.92 Aligned_cols=324 Identities=13% Similarity=0.110 Sum_probs=247.1
Q ss_pred cCCCCeeeeCCce---eeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEe-e---cCCCCeEEEEEecCCCEEEEE
Q 018858 4 AEAKPRRLRGHKA---TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVT-D---VGNGPVTSLCFKSGNEDIIYV 76 (349)
Q Consensus 4 ~~~~~~~l~~h~~---~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~-~---~~~~~v~~~~~~~~~~~l~~~ 76 (349)
+++.++.+.+|.. .|++++|+|+++++|++++.||.|++||+.+++.+..+ . .|...|.+++|+ ++++|+++
T Consensus 192 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~ 270 (615)
T 1pgu_A 192 PFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATV 270 (615)
T ss_dssp TBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEE
T ss_pred CcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEE
Confidence 4566788899999 99999999975789999999999999999999999888 6 899999999999 99999999
Q ss_pred eCCCeEEEEEccCCCcccceeec-cCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEc
Q 018858 77 SSGKEVKSFDVHMPASWRPLESY-NYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFI 155 (349)
Q Consensus 77 ~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 155 (349)
+.|+.|++||+++++....+... ..+...+.++.|. +++++++++.+|.|++||+++++.+..+. +|...|.+++|
T Consensus 271 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~-~~~~~v~~~~~- 347 (615)
T 1pgu_A 271 GADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTIS-GHNKGITALTV- 347 (615)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEEC-CCSSCEEEEET-
T ss_pred cCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEe-CCCCCEEEEEe-
Confidence 99999999999976543333322 1123567788885 88999999999999999999998888888 88888888888
Q ss_pred cCCCCCCCCCCC----CCC-ccccCCc----------------------------------eeEEeecCc----------
Q 018858 156 PWKPWEGLPENN----GNA-GQCYNPA----------------------------------FVHAIAIPD---------- 186 (349)
Q Consensus 156 ~~~~~~~~~~~~----~~~-~~~~~~~----------------------------------~~~~~~~~~---------- 186 (349)
|+ ...+..++. ... ....... ....++++|
T Consensus 348 ~~-l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 426 (615)
T 1pgu_A 348 NP-LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTND 426 (615)
T ss_dssp TT-TEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETT
T ss_pred cC-cEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCC
Confidence 65 111111111 000 0000000 011111111
Q ss_pred -------------------------ccccCCCCcEEEEEcC-CCeEEEEEccCceeeeecCCCCCCccceeeeeccccEE
Q 018858 187 -------------------------ADMLDKTNKICVVAKG-DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRD 240 (349)
Q Consensus 187 -------------------------~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (349)
+.+ .+++|++++. ||.|++||+.+++............+..++|+|+++++
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 503 (615)
T 1pgu_A 427 DDLLILQSFTGDIIKSVRLNSPGSAVSL---SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYI 503 (615)
T ss_dssp SEEEEEETTTCCEEEEEECSSCEEEEEE---CSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEE
T ss_pred CceEEEeccCCceeeecccCCCceEEEE---cCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEE
Confidence 000 1678899998 99999999998765433334456789999999999999
Q ss_pred EEeeeeeec----CceeeeeeeeecC-CCcceEEEEEeeecC----------CccEEEEeeCCCeEEEEecCCCcceecc
Q 018858 241 AEMEILDQS----GGKRLHLDYSVGG-HTAAASCVAFSMFGE----------RGKYLISGGNDKLVKVWDCSRFQGVQTS 305 (349)
Q Consensus 241 ~~~~~~~~~----~~~~~~~~~~~~~-h~~~i~~i~~~~~~~----------~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 305 (349)
++.+ .++. .....+.+..+.+ |...|++++|+ | ++++|++++.|+.|++||+.++.
T Consensus 504 ~~~~-~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~s---p~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----- 574 (615)
T 1pgu_A 504 AAGD-VMGKILLYDLQSREVKTSRWAFRTSKINAISWK---PAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM----- 574 (615)
T ss_dssp EEEE-TTSCEEEEETTTTEEEECCSCCCSSCEEEEEEC---CCC------CCSCCEEEEEETTSCEEEEESSCTT-----
T ss_pred EEcC-CCCeEEEeeCCCCcceeEeecCCCCceeEEEEc---CccccccccccCCCEEEEEcCCCcEEEEECCCCc-----
Confidence 9632 2222 2223455666777 99999999999 8 99999999999999999999863
Q ss_pred cccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 306 INNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 306 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
..+..+.+|...|++++|+| +++ |++++.||.|++|+++
T Consensus 575 ---~~~~~~~~h~~~v~~l~~s~-~~~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 575 ---KIIKALNAHKDGVNNLLWET-PST-LVSSGADACIKRWNVV 613 (615)
T ss_dssp ---CCEEETTSSTTCEEEEEEEE-TTE-EEEEETTSCEEEEEEC
T ss_pred ---eechhhhcCccceEEEEEcC-CCC-eEEecCCceEEEEeee
Confidence 35667788999999999998 777 9999999999999974
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-38 Score=264.73 Aligned_cols=286 Identities=15% Similarity=0.160 Sum_probs=224.2
Q ss_pred cCCCCeeeeCCceeeeEEEEecCC--CceEEEeCCCCcEEEEECCC-CcEE-EEeecCCCCeEEEEEecCCCEEEEEeCC
Q 018858 4 AEAKPRRLRGHKATATCCIASRDR--PGFVASSGEDGCICWFDLRS-KDVQ-LVTDVGNGPVTSLCFKSGNEDIIYVSSG 79 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~--~~~l~t~~~dg~i~vwd~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d 79 (349)
..+.++.+++|.+.|++++|+|++ +++|++|+.||.|++||+.+ ++.+ ..+.+|...|.+++|+|++++|++++.|
T Consensus 28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 107 (368)
T 3mmy_A 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD 107 (368)
T ss_dssp TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC
Confidence 345677889999999999999984 58999999999999999987 5554 7888999999999999999999999999
Q ss_pred CeEEEEEccCCCcccceeeccCcccceEEEEE--ccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccC
Q 018858 80 KEVKSFDVHMPASWRPLESYNYNKEEINQIVC--NPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPW 157 (349)
Q Consensus 80 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 157 (349)
|.|++||+++++.. ....|...|.+++| +|++++|++++.||.|++||+++++.+..+. .+ ..+.++.+.+
T Consensus 108 g~v~iwd~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~-~~~~~~~~~~- 180 (368)
T 3mmy_A 108 KTAKMWDLSSNQAI----QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQ-LP-ERCYCADVIY- 180 (368)
T ss_dssp SEEEEEETTTTEEE----EEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEE-CS-SCEEEEEEET-
T ss_pred CcEEEEEcCCCCce----eeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEe-cC-CCceEEEecC-
Confidence 99999999976432 23447789999999 8899999999999999999999998888887 43 4566666654
Q ss_pred CCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeee-ecCCCCCCccceeeeecc
Q 018858 158 KPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS-RSKSTTKPLKGSQSTSKV 236 (349)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~ 236 (349)
..+++++.++.+++|+++...... ............+++.++
T Consensus 181 -------------------------------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (368)
T 3mmy_A 181 -------------------------------------PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKD 223 (368)
T ss_dssp -------------------------------------TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEEC
T ss_pred -------------------------------------CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEccc
Confidence 478888899999999998764433 333333444555555544
Q ss_pred ccE----EEEeeeeeecC-------ceeeeeeeeecCCCc------------ceEEEEEeeecCCccEEEEeeCCCeEEE
Q 018858 237 NIR----DAEMEILDQSG-------GKRLHLDYSVGGHTA------------AASCVAFSMFGERGKYLISGGNDKLVKV 293 (349)
Q Consensus 237 ~~~----~~~~~~~~~~~-------~~~~~~~~~~~~h~~------------~i~~i~~~~~~~~~~~l~s~~~d~~i~v 293 (349)
... +++ +..++.+ .........+.+|.. .|++++|+ |++++|++++.||.|++
T Consensus 224 ~~~~~~~~~~-~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---p~~~~l~s~~~dg~i~i 299 (368)
T 3mmy_A 224 KQNKPTGFAL-GSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFH---PVHGTLATVGSDGRFSF 299 (368)
T ss_dssp TTSCEEEEEE-EETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEEC---TTTCCEEEEETTSCEEE
T ss_pred CCCCCCeEEE-ecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEe---cCCCEEEEEccCCeEEE
Confidence 432 442 2222221 111133445556654 79999999 89999999999999999
Q ss_pred EecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 294 WDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 294 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
||+.++ ..+..+..|...|.+++|+| ++++|++++.|+..+.|+
T Consensus 300 wd~~~~---------~~~~~~~~~~~~v~~~~~s~-~g~~l~~~s~d~~~~~~~ 343 (368)
T 3mmy_A 300 WDKDAR---------TKLKTSEQLDQPISACCFNH-NGNIFAYASSYDWSKGHE 343 (368)
T ss_dssp EETTTT---------EEEEECCCCSSCEEEEEECT-TSSCEEEEECCCSTTCGG
T ss_pred EECCCC---------cEEEEecCCCCCceEEEECC-CCCeEEEEeccccccccc
Confidence 999987 66778889999999999988 889999999887554443
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-37 Score=263.08 Aligned_cols=250 Identities=13% Similarity=0.206 Sum_probs=211.4
Q ss_pred cCCCCeee--eCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCe
Q 018858 4 AEAKPRRL--RGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKE 81 (349)
Q Consensus 4 ~~~~~~~l--~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 81 (349)
+++..+.+ .+|...|+|++|+|+ +++|++|+.||.|++||+++++.+..+.+|...+.+++++ +..+++|+.|+.
T Consensus 134 tg~~~~~~~~~~~~~~V~sv~fspd-g~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~ 210 (420)
T 4gga_A 134 SGDILQLLQMEQPGEYISSVAWIKE-GNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGH 210 (420)
T ss_dssp TCCEEEEEECCSTTCCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSE
T ss_pred CCCEEEEEEecCCCCcEEEEEECCC-CCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCc
Confidence 45555555 467889999999998 8999999999999999999999999999999999988775 679999999999
Q ss_pred EEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceE----eceeccccccceeEEEEccC
Q 018858 82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL----YKSLRAGHSSICSSVQFIPW 157 (349)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~v~~~~~~~~ 157 (349)
+++||..... ..+..+.+|...+..+.++|+++++++++.|+.+++|+..+++. +.... .|...|.+++|+|.
T Consensus 211 i~~~d~~~~~--~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~-~~~~~V~~~~~~p~ 287 (420)
T 4gga_A 211 IHHHDVRVAE--HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT-QHQGAVKAVAWCPW 287 (420)
T ss_dssp EEEEETTSSS--CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEEC-CCSSCEEEEEECTT
T ss_pred eeEeeecccc--eeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeec-ccCCceeeeeeCCC
Confidence 9999988643 44556777889999999999999999999999999999986642 34455 68889999999995
Q ss_pred CCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEE--EcCCCeEEEEEccCceeeeecCCCCCCccceeeeec
Q 018858 158 KPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV--AKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSK 235 (349)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (349)
....+++ |+.|+.|++||++++
T Consensus 288 -----------------------------------~~~~la~~~gs~D~~I~iwd~~t~--------------------- 311 (420)
T 4gga_A 288 -----------------------------------QSNVLATGGGTSDRHIRIWNVCSG--------------------- 311 (420)
T ss_dssp -----------------------------------CTTEEEEEECTTTCEEEEEETTTT---------------------
T ss_pred -----------------------------------cccEEEEEeecCCCEEEEEeCCcc---------------------
Confidence 4566665 458999999999975
Q ss_pred cccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEee--CCCeEEEEecCCCcceecccccceeee
Q 018858 236 VNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG--NDKLVKVWDCSRFQGVQTSINNDLLIK 313 (349)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~ 313 (349)
.....+..| ..+.++.|+ ++++.+++++ .|+.|+|||+.++ ..+..
T Consensus 312 -------------------~~~~~~~~~-~~v~~~~~~---~~~~~lv~~sg~~d~~I~iwd~~~~---------~~v~~ 359 (420)
T 4gga_A 312 -------------------ACLSAVDAH-SQVCSILWS---PHYKELISGHGFAQNQLVIWKYPTM---------AKVAE 359 (420)
T ss_dssp -------------------EEEEEEECS-SCEEEEEEE---TTTTEEEEEECTTTCCEEEEETTTC---------CEEEE
T ss_pred -------------------ccceeeccc-cceeeeeec---CCCCeEEEEEecCCCEEEEEECCCC---------cEEEE
Confidence 333444433 468889999 8888887764 7999999999998 67778
Q ss_pred ccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 314 NINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 314 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
+.+|.+.|++++|+| ++++|++|+.|++|+|||+
T Consensus 360 l~gH~~~V~~l~~sp-dg~~l~S~s~D~tvriWdv 393 (420)
T 4gga_A 360 LKGHTSRVLSLTMSP-DGATVASAAADETLRLWRC 393 (420)
T ss_dssp ECCCSSCEEEEEECT-TSSCEEEEETTTEEEEECC
T ss_pred EcCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEEC
Confidence 889999999999988 8899999999999999997
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-38 Score=303.44 Aligned_cols=324 Identities=15% Similarity=0.110 Sum_probs=260.1
Q ss_pred cCCCCeeeeCCceeeeEEEEecC-CCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeE
Q 018858 4 AEAKPRRLRGHKATATCCIASRD-RPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEV 82 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~-~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 82 (349)
+++.++.+.+|...|.+++|+|+ ++.++++|+.||.|++||+.+++.+..+.+|...|.+++|+|+++++++++.||.|
T Consensus 688 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v 767 (1249)
T 3sfz_A 688 TGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTL 767 (1249)
T ss_dssp TCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEE
T ss_pred CCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeE
Confidence 56788899999999999999995 25689999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCccccee----------------------------------------------------eccCcccceEEEE
Q 018858 83 KSFDVHMPASWRPLE----------------------------------------------------SYNYNKEEINQIV 110 (349)
Q Consensus 83 ~iwd~~~~~~~~~~~----------------------------------------------------~~~~~~~~v~~~~ 110 (349)
++||+.+++....+. ....|...+.+++
T Consensus 768 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~ 847 (1249)
T 3sfz_A 768 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCD 847 (1249)
T ss_dssp EEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEE
T ss_pred EEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEE
Confidence 999997653221111 0125667899999
Q ss_pred EccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCC--CCCC---------------------
Q 018858 111 CNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGL--PENN--------------------- 167 (349)
Q Consensus 111 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~--------------------- 167 (349)
|+|+++++++++.+|.|++||+.++..+..+. +|...|.+++|+|++.++.+ .++.
T Consensus 848 ~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~ 926 (1249)
T 3sfz_A 848 FSPYDHLAVIALSQYCVELWNIDSRLKVADCR-GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEI 926 (1249)
T ss_dssp ECSSTTEEEEECSSSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEE
T ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCceeeecC-CCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeeccccee
Confidence 99999999999999999999999999999999 99999999999998755411 1111
Q ss_pred -------------------------------------------CC--------------------Cccc-----cCCcee
Q 018858 168 -------------------------------------------GN--------------------AGQC-----YNPAFV 179 (349)
Q Consensus 168 -------------------------------------------~~--------------------~~~~-----~~~~~~ 179 (349)
.+ .+.. .+...+
T Consensus 927 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v 1006 (1249)
T 3sfz_A 927 DVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAV 1006 (1249)
T ss_dssp EEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCC
T ss_pred eEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCce
Confidence 00 0000 122345
Q ss_pred EEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeee--eeecCceeeeee
Q 018858 180 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI--LDQSGGKRLHLD 257 (349)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 257 (349)
.+++++| ++++|++++.||.|++||+.++...... .....+..+++++++..++.... ...+........
T Consensus 1007 ~~l~~s~------dg~~l~s~~~dg~i~vwd~~~~~~~~~~--~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~ 1078 (1249)
T 3sfz_A 1007 RHIQFTA------DGKTLISSSEDSVIQVWNWQTGDYVFLQ--AHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIE 1078 (1249)
T ss_dssp CCEEECS------SSSCEEEECSSSBEEEEETTTTEEECCB--CCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCC
T ss_pred EEEEECC------CCCEEEEEcCCCEEEEEECCCCceEEEe--cCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCcee
Confidence 5666666 8899999999999999999987665433 44577889999998876653211 111112233456
Q ss_pred eeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEe
Q 018858 258 YSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVC 337 (349)
Q Consensus 258 ~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 337 (349)
..+.+|...|.+++|+ |+++++++++.|+.|++||+.++ ..+..+.+|...|++++|+| ++++|+++
T Consensus 1079 ~~~~~~~~~v~~~~~s---~d~~~l~s~s~d~~v~iwd~~~~---------~~~~~l~~h~~~v~~~~~s~-dg~~lat~ 1145 (1249)
T 3sfz_A 1079 RDFTCHQGTVLSCAIS---SDATKFSSTSADKTAKIWSFDLL---------SPLHELKGHNGCVRCSAFSL-DGILLATG 1145 (1249)
T ss_dssp EEEECCSSCCCCEEEC---SSSSSCEEECCSSCCCEECSSSS---------SCSBCCCCCSSCEEEEEECS-SSSEEEEE
T ss_pred EEEcccCCcEEEEEEC---CCCCEEEEEcCCCcEEEEECCCc---------ceeeeeccCCCcEEEEEECC-CCCEEEEE
Confidence 6778899999999999 89999999999999999999987 56667788999999999988 88999999
Q ss_pred eCCCeEEEeeCC
Q 018858 338 DTSKVVKVYSIS 349 (349)
Q Consensus 338 ~~dg~i~iw~~~ 349 (349)
+.||.|++||++
T Consensus 1146 ~~dg~i~vwd~~ 1157 (1249)
T 3sfz_A 1146 DDNGEIRIWNVS 1157 (1249)
T ss_dssp ETTSCCCEEESS
T ss_pred eCCCEEEEEECC
Confidence 999999999974
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=288.38 Aligned_cols=319 Identities=11% Similarity=0.026 Sum_probs=228.9
Q ss_pred eeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 018858 11 LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP 90 (349)
Q Consensus 11 l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 90 (349)
..+|.+.|++++|+|+ +++||+|+.||.|++|+....+....+. |..+|.+++|+| +++|++++.|+.|++||++++
T Consensus 13 ~~gh~~~V~~lafspd-g~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~ 89 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFT-QNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQ 89 (902)
T ss_dssp EEECSSCEEEEEEETT-TTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TTEEEEEETTCEEEEEETTTC
T ss_pred ccCCCCCcEEEEECCC-CCEEEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCC
Confidence 3489999999999998 8999999999999999998777665544 788999999999 889999999999999999986
Q ss_pred CcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEe-----------ceeccccccceeEEEEccCC-
Q 018858 91 ASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLY-----------KSLRAGHSSICSSVQFIPWK- 158 (349)
Q Consensus 91 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----------~~~~~~~~~~v~~~~~~~~~- 158 (349)
+....+ . +...|++++|+|++++|++|+.||.|++||+++++.. ..+. +|...|.+++|+|++
T Consensus 90 ~~~~~~---~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~-~h~~~V~sl~~sp~~~ 164 (902)
T 2oaj_A 90 KVLTTV---F-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPA-ARLSPIVSIQWNPRDI 164 (902)
T ss_dssp SEEEEE---E-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSS-SCCCCCCEEEEETTEE
T ss_pred cEEEEE---c-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccc-cCCCCeEEEEEccCCC
Confidence 544333 2 4578999999999999999999999999999988753 2345 788999999999963
Q ss_pred CCC--CCCCCC----CCCcc-----------------------ccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEE
Q 018858 159 PWE--GLPENN----GNAGQ-----------------------CYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVI 209 (349)
Q Consensus 159 ~~~--~~~~~~----~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~ 209 (349)
..+ +..+.. ...+. ..+...+.+++|+| ++++|++++.||.|++|
T Consensus 165 ~~l~~g~~dg~vlWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp------dg~~lasgs~Dg~i~lW 238 (902)
T 2oaj_A 165 GTVLISYEYVTLTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP------NSLHIITIHEDNSLVFW 238 (902)
T ss_dssp EEEEEECSSCEEEEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT------TSSEEEEEETTCCEEEE
T ss_pred CEEEEEeCCCcEEEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC------CCCEEEEEECCCeEEEE
Confidence 111 111111 00000 01125689999999 89999999999999999
Q ss_pred EccCceeeee--cC----C-----------CCCCccceeeee----ccccEEEEeeeeeec---------C---------
Q 018858 210 NIESELNISR--SK----S-----------TTKPLKGSQSTS----KVNIRDAEMEILDQS---------G--------- 250 (349)
Q Consensus 210 d~~~~~~~~~--~~----~-----------~~~~~~~~~~~~----~~~~~~~~~~~~~~~---------~--------- 250 (349)
|+++++.+.. .. . .....+..++|+ |++..+++++..+.. .
T Consensus 239 d~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~ 318 (902)
T 2oaj_A 239 DANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSI 318 (902)
T ss_dssp ETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGG
T ss_pred ECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccc
Confidence 9998766542 11 1 013367888895 444444433322100 0
Q ss_pred ---------------c---------------------------------------eeee--------eee-------eec
Q 018858 251 ---------------G---------------------------------------KRLH--------LDY-------SVG 261 (349)
Q Consensus 251 ---------------~---------------------------------------~~~~--------~~~-------~~~ 261 (349)
. .... ... .+.
T Consensus 319 ~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~ 398 (902)
T 2oaj_A 319 TSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLS 398 (902)
T ss_dssp CCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGT
T ss_pred cchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCccc
Confidence 0 0000 000 011
Q ss_pred CCCcceEEEEEee-------------------------------ecCCccEEEEeeCCCeEEEEecCCCcceecccccce
Q 018858 262 GHTAAASCVAFSM-------------------------------FGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDL 310 (349)
Q Consensus 262 ~h~~~i~~i~~~~-------------------------------~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 310 (349)
.|...|+++++++ ++|++++|++|+.|++|++||+.++.... ...
T Consensus 399 ~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~----~~~ 474 (902)
T 2oaj_A 399 WLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQD----NAS 474 (902)
T ss_dssp TBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTT----TBC
T ss_pred ccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccC----Cce
Confidence 2234455555521 12789999999999999999998873210 011
Q ss_pred ee-ec-----cccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 311 LI-KN-----INLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 311 ~~-~~-----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
+. .. .+|...|++++|+| ++++|++|+.||+|+||++
T Consensus 475 ~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsgs~DgtV~lwd~ 517 (902)
T 2oaj_A 475 FEVNLSRTLNKAKELAVDKISFAA-ETLELAVSIETGDVVLFKY 517 (902)
T ss_dssp EEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEEETTSCEEEEEE
T ss_pred EEeechhhcCCCCCCceeEEEecC-CCCeEEEEecCcEEEEEEe
Confidence 11 11 27889999999998 8999999999999999996
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-37 Score=258.43 Aligned_cols=247 Identities=14% Similarity=0.137 Sum_probs=209.5
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC------cEEEEeecCCCCeEEEEEecCCCEEEEEe
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK------DVQLVTDVGNGPVTSLCFKSGNEDIIYVS 77 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 77 (349)
+++..+.+..|...|.+++|+|+ +.+|++|+.|+.+++|++... .....+..|...|.+++|+|++..|++++
T Consensus 95 ~~~~~~~~~~~~~~v~~~~~sp~-g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s 173 (354)
T 2pbi_B 95 TTNKEHAVTMPCTWVMACAYAPS-GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTAS 173 (354)
T ss_dssp TCCEEEEEECSSSCCCEEEECTT-SSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEE
T ss_pred CCCcceEEecCCCCEEEEEECCC-CCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEe
Confidence 34566778889999999999998 899999999999999998643 23566778999999999999999999999
Q ss_pred CCCeEEEEEccCCCcccceeeccCcccceEEEEEcc--CCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEc
Q 018858 78 SGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNP--KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFI 155 (349)
Q Consensus 78 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 155 (349)
.|++|++||+++++ .+..+.+|...|.+++|+| ++++|++|+.||.|++||+++++++..+. .|...|.+++|+
T Consensus 174 ~D~~v~lwd~~~~~---~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~-~h~~~v~~v~~~ 249 (354)
T 2pbi_B 174 GDGTCALWDVESGQ---LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFE-THESDVNSVRYY 249 (354)
T ss_dssp TTSEEEEEETTTCC---EEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEEC
T ss_pred CCCcEEEEeCCCCe---EEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCCeEEEEEe
Confidence 99999999999764 4556667888999999987 46899999999999999999999999998 899999999999
Q ss_pred cCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCC-CCCccceeeee
Q 018858 156 PWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKST-TKPLKGSQSTS 234 (349)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~ 234 (349)
| ++++|++|+.|++|++||++........... ....+..++|+
T Consensus 250 p------------------------------------~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s 293 (354)
T 2pbi_B 250 P------------------------------------SGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFS 293 (354)
T ss_dssp T------------------------------------TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC
T ss_pred C------------------------------------CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEe
Confidence 9 7899999999999999999987665544332 23467789999
Q ss_pred ccccEEEEeeeeeec----CceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEe
Q 018858 235 KVNIRDAEMEILDQS----GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD 295 (349)
Q Consensus 235 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd 295 (349)
|+++++++. ..+.. .......+..+.+|...|++++|+ |++++|++|+.|+.|++|+
T Consensus 294 ~~g~~l~~g-~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~s---pdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 294 LSGRLLFAG-YNDYTINVWDVLKGSRVSILFGHENRVSTLRVS---PDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TTSSEEEEE-ETTSCEEEEETTTCSEEEEECCCSSCEEEEEEC---TTSSCEEEEETTSEEEEEC
T ss_pred CCCCEEEEE-ECCCcEEEEECCCCceEEEEECCCCcEEEEEEC---CCCCEEEEEcCCCCEEecC
Confidence 999999853 32222 122334566788999999999999 8999999999999999996
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-38 Score=270.00 Aligned_cols=255 Identities=12% Similarity=0.161 Sum_probs=198.3
Q ss_pred CceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc-----------EEEEeecCC------------CCeEEEEEecCC
Q 018858 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD-----------VQLVTDVGN------------GPVTSLCFKSGN 70 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~-----------~~~~~~~~~------------~~v~~~~~~~~~ 70 (349)
|.+.|++++|+|+ +++|++|+.||.|++||+.+++ ....+.+|. ..|.+++|+|++
T Consensus 27 ~~~~V~~v~~s~~-g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 27 EADIISTVEFNHS-GELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp GGGSEEEEEECSS-SSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred ccCcEEEEEECCC-CCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 5789999999998 8999999999999999998776 477888998 889999999998
Q ss_pred --CEEEEEeCCCeEEEEEccCCCccc------------------------------------ce-eeccCcccceEEEEE
Q 018858 71 --EDIIYVSSGKEVKSFDVHMPASWR------------------------------------PL-ESYNYNKEEINQIVC 111 (349)
Q Consensus 71 --~~l~~~~~dg~i~iwd~~~~~~~~------------------------------------~~-~~~~~~~~~v~~~~~ 111 (349)
.+|++++.|+.|++||+.++.... .. ....+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 789999999999999987532110 00 113568889999999
Q ss_pred ccCCCEEEEEcCCCcEEEEEcC-CceEec-------eeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEee
Q 018858 112 NPKSSFLACADDGGDVKIIDIR-QHCLYK-------SLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIA 183 (349)
Q Consensus 112 ~~~~~~l~~~~~dg~i~i~d~~-~~~~~~-------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (349)
+|++++|++| .|+.|++||++ .++.+. .+. .|...|.+++|+|
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~p--------------------------- 236 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANME-ELTEVITAAEFHP--------------------------- 236 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGG-GCCCCEEEEEECS---------------------------
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeeccccccc-ccCcceEEEEECC---------------------------
Confidence 9999999998 79999999999 444444 345 7888999999999
Q ss_pred cCcccccCCCC-cEEEEEcCCCeEEEEEccCcee----eeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeee
Q 018858 184 IPDADMLDKTN-KICVVAKGDGVVDVINIESELN----ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDY 258 (349)
Q Consensus 184 ~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (349)
++ ++|++|+.||.|++||++++.. ...+..+. ......
T Consensus 237 ---------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~----------------------------~~~~~~ 279 (447)
T 3dw8_B 237 ---------NSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPE----------------------------DPSNRS 279 (447)
T ss_dssp ---------SCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC---------------------------------CC
T ss_pred ---------CCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCC----------------------------Cccccc
Confidence 66 8999999999999999997532 00000000 000111
Q ss_pred eecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCC-Ccceecccccceeeeccccccc---------------eE
Q 018858 259 SVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR-FQGVQTSINNDLLIKNINLNKK---------------VN 322 (349)
Q Consensus 259 ~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~---------------v~ 322 (349)
.+.+|...|.+++|+ |++++|++++. +.|++||++. + ..+..+..|... +.
T Consensus 280 ~~~~~~~~v~~~~~s---~~g~~l~~~~~-~~v~iwd~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~~i~~~~ 346 (447)
T 3dw8_B 280 FFSEIISSISDVKFS---HSGRYMMTRDY-LSVKVWDLNMEN---------RPVETYQVHEYLRSKLCSLYENDCIFDKF 346 (447)
T ss_dssp HHHHHTTCEEEEEEC---TTSSEEEEEES-SEEEEEETTCCS---------SCSCCEESCGGGTTTHHHHHHTSGGGCCC
T ss_pred cccccCceEEEEEEC---CCCCEEEEeeC-CeEEEEeCCCCc---------cccceeeccccccccccccccccccccce
Confidence 223344599999999 89999999998 9999999987 4 444455555432 33
Q ss_pred EEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 323 WLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 323 ~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.++|+| ++++|++++.||.|++||+.
T Consensus 347 ~~~~s~-~~~~l~s~s~dg~v~iwd~~ 372 (447)
T 3dw8_B 347 ECCWNG-SDSVVMTGSYNNFFRMFDRN 372 (447)
T ss_dssp CEEECT-TSSEEEEECSTTEEEEEETT
T ss_pred EEEECC-CCCEEEEeccCCEEEEEEcC
Confidence 489988 88899999999999999974
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-37 Score=264.92 Aligned_cols=248 Identities=16% Similarity=0.209 Sum_probs=213.2
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEe--cCCCEEEEEeCCCe
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFK--SGNEDIIYVSSGKE 81 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~ 81 (349)
+++.++.+.+|.+.|++++|+|+ + +|++|+.||+|++||+++++.+..+.+|...|.+++|+ ++++++++++.|+.
T Consensus 151 ~~~~~~~~~~h~~~V~~l~~~~~-~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~ 228 (464)
T 3v7d_B 151 NKKFLLQLSGHDGGVWALKYAHG-G-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT 228 (464)
T ss_dssp TTEEEEEECCCSSCEEEEEECST-T-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSC
T ss_pred CCcEEEEEeCCCcCEEEEEEcCC-C-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCc
Confidence 56678889999999999999987 4 99999999999999999999999999999999999998 57789999999999
Q ss_pred EEEEEccCCCccc--------------------ceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEecee
Q 018858 82 VKSFDVHMPASWR--------------------PLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSL 141 (349)
Q Consensus 82 i~iwd~~~~~~~~--------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 141 (349)
|++||++++.... .+..+.+|...+.++ +++++++++++.||.|++||+++++.+..+
T Consensus 229 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~ 306 (464)
T 3v7d_B 229 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYIL 306 (464)
T ss_dssp EEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred EEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence 9999998754322 134456677777766 577899999999999999999999999999
Q ss_pred ccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecC
Q 018858 142 RAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK 221 (349)
Q Consensus 142 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 221 (349)
. +|...|.+++|+| +++++++|+.||.|++||++++
T Consensus 307 ~-~~~~~v~~~~~~~------------------------------------~~~~l~sg~~dg~i~vwd~~~~------- 342 (464)
T 3v7d_B 307 S-GHTDRIYSTIYDH------------------------------------ERKRCISASMDTTIRIWDLENG------- 342 (464)
T ss_dssp C-CCSSCEEEEEEET------------------------------------TTTEEEEEETTSCEEEEETTTT-------
T ss_pred c-CCCCCEEEEEEcC------------------------------------CCCEEEEEeCCCcEEEEECCCC-------
Confidence 8 8999999999999 7899999999999999999875
Q ss_pred CCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcc
Q 018858 222 STTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG 301 (349)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 301 (349)
+.+..+.+|...|.++.++ +++|++++.||.|++||+.+..
T Consensus 343 ---------------------------------~~~~~~~~h~~~v~~~~~~-----~~~l~s~s~dg~v~vwd~~~~~- 383 (464)
T 3v7d_B 343 ---------------------------------ELMYTLQGHTALVGLLRLS-----DKFLVSAAADGSIRGWDANDYS- 383 (464)
T ss_dssp ---------------------------------EEEEEECCCSSCEEEEEEC-----SSEEEEEETTSEEEEEETTTCC-
T ss_pred ---------------------------------cEEEEEeCCCCcEEEEEEc-----CCEEEEEeCCCcEEEEECCCCc-
Confidence 5667788899999999986 4799999999999999999863
Q ss_pred eecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 302 VQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.. ....+...+..+++++ ++++|++++ ||.|++||++
T Consensus 384 --------~~-~~~~~~~~~~~~~~~~-~~~~l~~~~-dg~i~iwd~~ 420 (464)
T 3v7d_B 384 --------RK-FSYHHTNLSAITTFYV-SDNILVSGS-ENQFNIYNLR 420 (464)
T ss_dssp --------EE-EEEECTTCCCEEEEEE-CSSEEEEEE-TTEEEEEETT
T ss_pred --------ee-eeecCCCCccEEEEEe-CCCEEEEec-CCeEEEEECC
Confidence 22 2223566777788877 787888887 9999999974
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=264.23 Aligned_cols=265 Identities=16% Similarity=0.197 Sum_probs=204.6
Q ss_pred CCeeeeCCceee-eEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 018858 7 KPRRLRGHKATA-TCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 7 ~~~~l~~h~~~i-~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 85 (349)
....+++|...| .|+.+ + +++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++ ++++|+.||.|++|
T Consensus 113 ~~~~l~~h~~~v~~~~~~--~-~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vw 188 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF--E-DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVW 188 (464)
T ss_dssp EEEEEECCSSSCEEEEEE--E-TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEE
T ss_pred ceEEEcCCCCCcEEEEEE--C-CCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEE
Confidence 456889999885 56555 3 5799999999999999999999999999999999999999987 89999999999999
Q ss_pred EccCCCcccceeeccCcccceEEEEEc--cCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCC
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCN--PKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
|+++++ .+..+.+|...|.+++|+ ++++++++++.||.|++||++++....... .......+.+.|...-.
T Consensus 189 d~~~~~---~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-- 261 (464)
T 3v7d_B 189 DIKKGC---CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHG--EEHDYPLVFHTPEENPY-- 261 (464)
T ss_dssp ETTTTE---EEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC--------CCSSEEESCGGGCTT--
T ss_pred ECCCCc---EEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCccccccc--ccCCcceEeeccCCCeE--
Confidence 999763 455667788999999998 477899999999999999998765433221 00111111111100000
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
......-....+.++ .+ +++++++++.||.|++||++++
T Consensus 262 ----~~~~~~~~~~~v~~~--~~------~~~~l~~~~~d~~i~vwd~~~~----------------------------- 300 (464)
T 3v7d_B 262 ----FVGVLRGHMASVRTV--SG------HGNIVVSGSYDNTLIVWDVAQM----------------------------- 300 (464)
T ss_dssp ----EEEEECCCSSCEEEE--EE------ETTEEEEEETTSCEEEEETTTT-----------------------------
T ss_pred ----EEEEccCccceEEEE--cC------CCCEEEEEeCCCeEEEEECCCC-----------------------------
Confidence 000000001111111 22 6889999999999999999875
Q ss_pred eeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEE
Q 018858 244 EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNW 323 (349)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 323 (349)
..+..+.+|...|.++.|+ |+++++++|+.|+.|++||++++ ..+..+.+|...|.+
T Consensus 301 -----------~~~~~~~~~~~~v~~~~~~---~~~~~l~sg~~dg~i~vwd~~~~---------~~~~~~~~h~~~v~~ 357 (464)
T 3v7d_B 301 -----------KCLYILSGHTDRIYSTIYD---HERKRCISASMDTTIRIWDLENG---------ELMYTLQGHTALVGL 357 (464)
T ss_dssp -----------EEEEEECCCSSCEEEEEEE---TTTTEEEEEETTSCEEEEETTTT---------EEEEEECCCSSCEEE
T ss_pred -----------cEEEEecCCCCCEEEEEEc---CCCCEEEEEeCCCcEEEEECCCC---------cEEEEEeCCCCcEEE
Confidence 5566778899999999999 89999999999999999999987 677788899999999
Q ss_pred EEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 324 LCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 324 ~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
++++ +++|++++.||.|++||++
T Consensus 358 ~~~~---~~~l~s~s~dg~v~vwd~~ 380 (464)
T 3v7d_B 358 LRLS---DKFLVSAAADGSIRGWDAN 380 (464)
T ss_dssp EEEC---SSEEEEEETTSEEEEEETT
T ss_pred EEEc---CCEEEEEeCCCcEEEEECC
Confidence 9995 4599999999999999974
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-37 Score=285.75 Aligned_cols=332 Identities=8% Similarity=0.031 Sum_probs=232.2
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEE-----------EEeecCCCCeEEEEEecC-CC
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQ-----------LVTDVGNGPVTSLCFKSG-NE 71 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~-----------~~~~~~~~~v~~~~~~~~-~~ 71 (349)
+++.++.+. |.+.|++++|+|+ +++|++|+.||.|++||+++++.. ..+.+|..+|.+++|+|+ +.
T Consensus 88 ~~~~~~~~~-~~~~V~~v~~sp~-g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~ 165 (902)
T 2oaj_A 88 SQKVLTTVF-VPGKITSIDTDAS-LDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIG 165 (902)
T ss_dssp TCSEEEEEE-CSSCEEEEECCTT-CSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEE
T ss_pred CCcEEEEEc-CCCCEEEEEECCC-CCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCC
Confidence 345666776 6789999999998 899999999999999999988753 223568899999999996 57
Q ss_pred EEEEEeCCCeEEEEEccCCCcccceeec---------------cCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCce
Q 018858 72 DIIYVSSGKEVKSFDVHMPASWRPLESY---------------NYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC 136 (349)
Q Consensus 72 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 136 (349)
.+++|+.||.| +||+++++....+... ..|...|++++|+|++++|++++.||.|++||+++++
T Consensus 166 ~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~ 244 (902)
T 2oaj_A 166 TVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGH 244 (902)
T ss_dssp EEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCC
T ss_pred EEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 89999999999 9999976433322211 2234679999999999999999999999999999887
Q ss_pred Eece--ec--cc-------------cccceeEEEEcc----CC-CCC--CCCCC-----C----C---------------
Q 018858 137 LYKS--LR--AG-------------HSSICSSVQFIP----WK-PWE--GLPEN-----N----G--------------- 168 (349)
Q Consensus 137 ~~~~--~~--~~-------------~~~~v~~~~~~~----~~-~~~--~~~~~-----~----~--------------- 168 (349)
++.. +. .. +...|.+++|++ ++ ..+ +..+. . .
T Consensus 245 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~ 324 (902)
T 2oaj_A 245 MIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGM 324 (902)
T ss_dssp EEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHH
T ss_pred EEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhh
Confidence 7543 21 01 234789999953 21 111 00000 0 0
Q ss_pred ---------------------------------------------------------CCccccC------------Ccee
Q 018858 169 ---------------------------------------------------------NAGQCYN------------PAFV 179 (349)
Q Consensus 169 ---------------------------------------------------------~~~~~~~------------~~~~ 179 (349)
..+.... ...+
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v 404 (902)
T 2oaj_A 325 KNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLA 404 (902)
T ss_dssp HHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBE
T ss_pred hhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCe
Confidence 0000000 0111
Q ss_pred EEeecCcc----------------------------cccCCCCcEEEEEcCCCeEEEEEccCceeee--ec--------C
Q 018858 180 HAIAIPDA----------------------------DMLDKTNKICVVAKGDGVVDVINIESELNIS--RS--------K 221 (349)
Q Consensus 180 ~~~~~~~~----------------------------~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~--------~ 221 (349)
.++++.+. .-..+++++|++|+.|++|++||+.++.... .+ .
T Consensus 405 ~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~ 484 (902)
T 2oaj_A 405 TTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLN 484 (902)
T ss_dssp EEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTT
T ss_pred eEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcC
Confidence 22222100 0012478899999999999999998763210 00 0
Q ss_pred CCCCCccceeeeeccccEEEEeeeeeecCc----e---------------------------------------------
Q 018858 222 STTKPLKGSQSTSKVNIRDAEMEILDQSGG----K--------------------------------------------- 252 (349)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--------------------------------------------- 252 (349)
......+.+++|+|+|+++|+. ..|+.+. .
T Consensus 485 ~~h~~~V~svafspdg~~LAsg-s~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (902)
T 2oaj_A 485 KAKELAVDKISFAAETLELAVS-IETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQ 563 (902)
T ss_dssp CSSSCCEEEEEEETTTTEEEEE-ETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSE
T ss_pred CCCCCceeEEEecCCCCeEEEE-ecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCC
Confidence 1345678999999999999962 2222111 0
Q ss_pred eeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecc-ccccceEEEEee----
Q 018858 253 RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI-NLNKKVNWLCTT---- 327 (349)
Q Consensus 253 ~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~---- 327 (349)
..+++..+.+|.+.|++++|+ |+| +||+|+.|++|++||+++...+.. ..+..+. +|...|++++|+
T Consensus 564 g~~~~~~l~~h~~~V~svafS---pdG-~lAsgs~D~tv~lwd~~~~~~~~~----~~~~~~~~gh~~~V~sv~Fs~~~~ 635 (902)
T 2oaj_A 564 GFMPSTAVHANKGKTSAINNS---NIG-FVGIAYAAGSLMLIDRRGPAIIYM----ENIREISGAQSACVTCIEFVIMEY 635 (902)
T ss_dssp EEEEEEEECCCSCSEEEEEEC---BTS-EEEEEETTSEEEEEETTTTEEEEE----EEGGGTCSSCCCCEEEEEEEEEEC
T ss_pred ccceeEEEEcCCCcEEEEEec---CCc-EEEEEeCCCcEEEEECCCCeEEEE----eehhHhccccccceEEEEEEEEec
Confidence 013466788899999999999 899 999999999999999987632110 0112343 899999999999
Q ss_pred -cCC---CCcEEEeeCCCeEEEeeC
Q 018858 328 -PTE---SENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 328 -~~~---~~~l~~~~~dg~i~iw~~ 348 (349)
| | +++|++++.|++|++||+
T Consensus 636 ~~-Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 636 GD-DGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp TT-SSSEEEEEEEEETTSEEEEEEE
T ss_pred CC-CCCcceEEEEEecCCcEEEEEE
Confidence 7 5 479999999999999997
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-37 Score=262.90 Aligned_cols=252 Identities=17% Similarity=0.275 Sum_probs=216.0
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK 83 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 83 (349)
+++.++.+.+|.+.|.+++| + +++|++|+.||.|++||+.+++.+..+..|...|.+++|+ ++++++++.||.|+
T Consensus 162 ~~~~~~~~~~h~~~v~~l~~--~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~ 236 (435)
T 1p22_A 162 TLECKRILTGHTGSVLCLQY--D-ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIA 236 (435)
T ss_dssp SCCEEEEECCCSSCEEEEEC--C-SSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEE
T ss_pred CCeEEEEEcCCCCcEEEEEE--C-CCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEE
Confidence 56778889999999999999 4 7899999999999999999999999999999999999997 45999999999999
Q ss_pred EEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCC
Q 018858 84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
+||++++........+.+|...|.+++| +++++++|+.||.|++||+++++.+..+. +|...+.++.|+
T Consensus 237 vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~-------- 305 (435)
T 1p22_A 237 VWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLN-GHKRGIACLQYR-------- 305 (435)
T ss_dssp EEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEEE--------
T ss_pred EEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEc-CCCCcEEEEEeC--------
Confidence 9999987655555667788899999999 67899999999999999999999999999 899999999884
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
++++++|+.||.|++||++++
T Consensus 306 ------------------------------~~~l~~g~~dg~i~iwd~~~~----------------------------- 326 (435)
T 1p22_A 306 ------------------------------DRLVVSGSSDNTIRLWDIECG----------------------------- 326 (435)
T ss_dssp ------------------------------TTEEEEEETTSCEEEEETTTC-----------------------------
T ss_pred ------------------------------CCEEEEEeCCCeEEEEECCCC-----------------------------
Confidence 478999999999999999974
Q ss_pred eeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEE
Q 018858 244 EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNW 323 (349)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 323 (349)
..+..+.+|...|.++.+ ++++|++|+.||.|++||+.+............+..+.+|.+.|++
T Consensus 327 -----------~~~~~~~~h~~~v~~~~~-----~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 390 (435)
T 1p22_A 327 -----------ACLRVLEGHEELVRCIRF-----DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFR 390 (435)
T ss_dssp -----------CEEEEECCCSSCEEEEEC-----CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCC
T ss_pred -----------CEEEEEeCCcCcEEEEEe-----cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEE
Confidence 455677889999999986 4679999999999999999765321111111256677889999999
Q ss_pred EEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 324 LCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 324 ~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
++| ++++|++++.||.|++||+.
T Consensus 391 l~~---~~~~l~s~s~Dg~i~iwd~~ 413 (435)
T 1p22_A 391 LQF---DEFQIVSSSHDDTILIWDFL 413 (435)
T ss_dssp EEE---CSSCEEECCSSSEEEEEC--
T ss_pred EEe---CCCEEEEEeCCCEEEEEECC
Confidence 999 56689999999999999973
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-36 Score=245.81 Aligned_cols=250 Identities=17% Similarity=0.167 Sum_probs=209.1
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK 83 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 83 (349)
+++..+.+.+|...|.+++|+|+ +++|++++.||.|++||+++++.+..+.+|...|.+++|+|++++|++++.|+.|+
T Consensus 54 ~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~ 132 (312)
T 4ery_A 54 DGKFEKTISGHKLGISDVAWSSD-SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 132 (312)
T ss_dssp TCCEEEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEE
T ss_pred CcccchhhccCCCceEEEEEcCC-CCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEE
Confidence 45667788999999999999998 89999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCC
Q 018858 84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
+||+++++ .+..+..|...+.+++|+|++++|++++.||.|++||+++++.+..+...+...+..++|+|
T Consensus 133 iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~------- 202 (312)
T 4ery_A 133 IWDVKTGK---CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP------- 202 (312)
T ss_dssp EEETTTCC---EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECT-------
T ss_pred EEECCCCE---EEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECC-------
Confidence 99998764 44556667889999999999999999999999999999998887776535667889999999
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCc-cceeeee-ccccEEE
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPL-KGSQSTS-KVNIRDA 241 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~ 241 (349)
++++|++++.||.|++||+++++............ .....++ +++.+++
T Consensus 203 -----------------------------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 253 (312)
T 4ery_A 203 -----------------------------NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 253 (312)
T ss_dssp -----------------------------TSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEE
T ss_pred -----------------------------CCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEE
Confidence 79999999999999999999988776655443222 2223344 5667776
Q ss_pred Eeeeeeec----CceeeeeeeeecCCCcceEEEEEeeecCCccEEEEee--CCCeEEEEecC
Q 018858 242 EMEILDQS----GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG--NDKLVKVWDCS 297 (349)
Q Consensus 242 ~~~~~~~~----~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~--~d~~i~vwd~~ 297 (349)
+ +..|+. .....+.+..+.+|...|.+++|+ |+++++++++ .|+.|++|+.+
T Consensus 254 s-g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~---p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 254 S-GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACH---PTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp E-CCTTSCEEEEETTTCCEEEEECCCSSCEEEEEEC---SSSSEEEEEECTTTCCEEEEECC
T ss_pred E-ECCCCEEEEEECCCchhhhhhhccCCcEEEEeec---CcCCceEEEEccCCccEEEecCC
Confidence 4 433332 222445677888999999999999 8999999987 69999999864
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-36 Score=257.01 Aligned_cols=241 Identities=18% Similarity=0.247 Sum_probs=195.9
Q ss_pred eeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccce
Q 018858 17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPL 96 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 96 (349)
.|++++|+|+ +++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+++++....+
T Consensus 125 ~v~~v~~s~d-g~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~ 203 (393)
T 1erj_A 125 YIRSVCFSPD-GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL 203 (393)
T ss_dssp BEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred eEEEEEECCC-CCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE
Confidence 4999999998 899999999999999999999999999999999999999999999999999999999999976433222
Q ss_pred eeccCcccceEEEEEcc-CCCEEEEEcCCCcEEEEEcCCceEeceec------cccccceeEEEEccCCCCCCCCCCCCC
Q 018858 97 ESYNYNKEEINQIVCNP-KSSFLACADDGGDVKIIDIRQHCLYKSLR------AGHSSICSSVQFIPWKPWEGLPENNGN 169 (349)
Q Consensus 97 ~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~ 169 (349)
. +...+.+++|+| ++++|++|+.|+.|++||+++++.+..+. .+|...|.+++|+|
T Consensus 204 ---~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~------------- 266 (393)
T 1erj_A 204 ---S-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR------------- 266 (393)
T ss_dssp ---E-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT-------------
T ss_pred ---E-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECC-------------
Confidence 2 346799999999 88999999999999999999988776652 16788899999999
Q ss_pred CccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeee-----------cCCCCCCccceeeeecccc
Q 018858 170 AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISR-----------SKSTTKPLKGSQSTSKVNI 238 (349)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~ 238 (349)
++++|++|+.||.|++||+++...... ........+..++++++++
T Consensus 267 -----------------------~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 323 (393)
T 1erj_A 267 -----------------------DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE 323 (393)
T ss_dssp -----------------------TSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGC
T ss_pred -----------------------CCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCC
Confidence 899999999999999999986432111 1112345678899999999
Q ss_pred EEEEeeeeeec----CceeeeeeeeecCCCcceEEEEEee---ecCCccEEEEeeCCCeEEEEecCCC
Q 018858 239 RDAEMEILDQS----GGKRLHLDYSVGGHTAAASCVAFSM---FGERGKYLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 239 ~~~~~~~~~~~----~~~~~~~~~~~~~h~~~i~~i~~~~---~~~~~~~l~s~~~d~~i~vwd~~~~ 299 (349)
++++ ++.|+. .......+..+.+|...|.+++|+| ++|++++|++|+.||.|++|++...
T Consensus 324 ~l~s-gs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 324 YILS-GSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EEEE-EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred EEEE-EeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 9985 333322 2223456677889999999999984 2347899999999999999998753
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=255.13 Aligned_cols=274 Identities=18% Similarity=0.196 Sum_probs=225.6
Q ss_pred CCCeeeeCCceee-eEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 6 AKPRRLRGHKATA-TCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 6 ~~~~~l~~h~~~i-~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
+..+.+.+|.+.| .| +.++ +++|++|+.||.|++||+.+++.+..+.+|...|.+++|+ ++++++++.||.|++
T Consensus 109 ~~~~~l~~h~~~v~~~--~~~~-g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~v 183 (445)
T 2ovr_B 109 KSPKVLKGHDDHVITC--LQFC-GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKV 183 (445)
T ss_dssp CCCEEEECSTTSCEEE--EEEE-TTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEE
T ss_pred ceeEEecccCCCcEEE--EEEc-CCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEE
Confidence 4678899999875 55 4455 7899999999999999999999999999999999999998 669999999999999
Q ss_pred EEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCC
Q 018858 85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLP 164 (349)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 164 (349)
||++++ ..+..+..|...|.+++|+ ++.+++|+.||.|++||+++++.+..+. +|...+.+++|.
T Consensus 184 wd~~~~---~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~~--------- 248 (445)
T 2ovr_B 184 WNAETG---ECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLM-GHVAAVRCVQYD--------- 248 (445)
T ss_dssp EETTTT---EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEE-CCSSCEEEEEEC---------
T ss_pred EECCcC---cEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEc-CCcccEEEEEEC---------
Confidence 999876 4455667788999999995 5689999999999999999999999998 899999999883
Q ss_pred CCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEee
Q 018858 165 ENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME 244 (349)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (349)
++++++|+.||.|++||+++++....... ....+.++.+ ++..+++ +
T Consensus 249 -----------------------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~--~~~~l~~-~ 295 (445)
T 2ovr_B 249 -----------------------------GRRVVSGAYDFMVKVWDPETETCLHTLQG-HTNRVYSLQF--DGIHVVS-G 295 (445)
T ss_dssp -----------------------------SSCEEEEETTSCEEEEEGGGTEEEEEECC-CSSCEEEEEE--CSSEEEE-E
T ss_pred -----------------------------CCEEEEEcCCCEEEEEECCCCcEeEEecC-CCCceEEEEE--CCCEEEE-E
Confidence 57899999999999999998877665543 3456677777 7777774 3
Q ss_pred eeeec----CceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccc---c
Q 018858 245 ILDQS----GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNIN---L 317 (349)
Q Consensus 245 ~~~~~----~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~---~ 317 (349)
..++. .....+.+..+.+|...+.++.++ ++++++++.||.|++||++++ ..+..+.. |
T Consensus 296 ~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~-----~~~l~~~~~dg~i~vwd~~~~---------~~~~~~~~~~~~ 361 (445)
T 2ovr_B 296 SLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK-----DNILVSGNADSTVKIWDIKTG---------QCLQTLQGPNKH 361 (445)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE-----TTEEEEEETTSCEEEEETTTC---------CEEEEECSTTSC
T ss_pred eCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe-----CCEEEEEeCCCeEEEEECCCC---------cEEEEEccCCCC
Confidence 32222 222345667788899999888765 569999999999999999887 44444443 8
Q ss_pred ccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 318 NKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 318 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
...|++++|+ +++|++++.||.|++||++
T Consensus 362 ~~~v~~~~~~---~~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 362 QSAVTCLQFN---KNFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp SSCEEEEEEC---SSEEEEEETTSEEEEEETT
T ss_pred CCCEEEEEEC---CCEEEEEeCCCeEEEEECC
Confidence 8899999994 4599999999999999974
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-35 Score=243.93 Aligned_cols=251 Identities=13% Similarity=0.179 Sum_probs=207.0
Q ss_pred cCCCCeeee--CCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCe
Q 018858 4 AEAKPRRLR--GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKE 81 (349)
Q Consensus 4 ~~~~~~~l~--~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 81 (349)
+++.++.++ +|...|++++|+|+ +++|++|+.||+|++||+++++.+..+.+|...+.++.+ ++..+++++.++.
T Consensus 54 tg~~~~~~~~~~~~~~V~~v~~~~~-~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~ 130 (318)
T 4ggc_A 54 SGDILQLLQMEQPGEYISSVAWIKE-GNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGH 130 (318)
T ss_dssp TCCEEEEEECCSTTCCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSE
T ss_pred CCCEEEEEEecCCCCeEEEEEECCC-CCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCc
Confidence 456666654 67888999999998 899999999999999999999999999999988877655 5679999999999
Q ss_pred EEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEe----ceeccccccceeEEEEccC
Q 018858 82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLY----KSLRAGHSSICSSVQFIPW 157 (349)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~~v~~~~~~~~ 157 (349)
+++|+..... ..+..+..|...+..+.+.++++++++++.|+.|++||+++++.. .... .+...+.++.+.|+
T Consensus 131 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~ 207 (318)
T 4ggc_A 131 IHHHDVRVAE--HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT-QHQGAVKAVAWCPW 207 (318)
T ss_dssp EEEEETTSSS--CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEEC-CCCSCEEEEEECTT
T ss_pred eEeeecCCCc--eeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeec-ccCCceEEEEecCC
Confidence 9999988643 445566678899999999999999999999999999999876532 2233 56778899999884
Q ss_pred CCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcE--EEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeec
Q 018858 158 KPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKI--CVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSK 235 (349)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (349)
.... +++++.++.|++||.+...
T Consensus 208 -----------------------------------~~~~~~~~~~~~~~~i~lwd~~~~~-------------------- 232 (318)
T 4ggc_A 208 -----------------------------------QSNVLATGGGTSDRHIRIWNVCSGA-------------------- 232 (318)
T ss_dssp -----------------------------------STTEEEEEECTTTCEEEEEETTTCC--------------------
T ss_pred -----------------------------------CCcEEEEEecCCCCEEEEEeccccc--------------------
Confidence 3343 3467789999999998731
Q ss_pred cccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEee--CCCeEEEEecCCCcceecccccceeee
Q 018858 236 VNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG--NDKLVKVWDCSRFQGVQTSINNDLLIK 313 (349)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~ 313 (349)
. .....+...+..+.++ ++++.+++++ .|+.|++||++++ ..+..
T Consensus 233 --------------------~-~~~~~~~~~v~~~~~~---~~~~~~~~~sg~~d~~i~iwd~~~~---------~~~~~ 279 (318)
T 4ggc_A 233 --------------------C-LSAVDAHSQVCSILWS---PHYKELISGHGFAQNQLVIWKYPTM---------AKVAE 279 (318)
T ss_dssp --------------------E-EEEEECSSCEEEEEEE---TTTTEEEEEECTTTCCEEEEETTTC---------CEEEE
T ss_pred --------------------c-cccccceeeeeeeeec---ccccceEEEEEcCCCEEEEEECCCC---------cEEEE
Confidence 1 1223356678999999 7888776654 7999999999998 67778
Q ss_pred ccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 314 NINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 314 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
+.+|.+.|++++|+| ++++|++++.||+|+|||+.
T Consensus 280 l~gH~~~V~~l~~sp-dg~~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 280 LKGHTSRVLSLTMSP-DGATVASAAADETLRLWRCF 314 (318)
T ss_dssp ECCCSSCEEEEEECT-TSSCEEEEETTTEEEEECCS
T ss_pred EcCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEECC
Confidence 889999999999988 88899999999999999973
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-37 Score=261.92 Aligned_cols=254 Identities=18% Similarity=0.222 Sum_probs=207.1
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc-------EEEEeecCCCCeEEEEEecC-CCEEEE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD-------VQLVTDVGNGPVTSLCFKSG-NEDIIY 75 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~-------~~~~~~~~~~~v~~~~~~~~-~~~l~~ 75 (349)
+++..+.+++|...|.+++|+|+ +++|++|+.|+.+++||+.+.. ....+.+|...|.++.|+|+ +..|++
T Consensus 97 ~~~~~~~~~~h~~~v~~~~~s~~-g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s 175 (380)
T 3iz6_a 97 TSQKTHAIKLHCPWVMECAFAPN-GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLIT 175 (380)
T ss_dssp TTEEEEEEECCCTTCCCCEECTT-SSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEE
T ss_pred CCccceEEecCCCCEEEEEECCC-CCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEE
Confidence 45677889999999999999998 8999999999999999986532 24567889999999999996 456999
Q ss_pred EeCCCeEEEEEccCCCccccee--eccCcccceEEEEEcc-CCCEEEEEcCCCcEEEEEcC-CceEeceeccccccceeE
Q 018858 76 VSSGKEVKSFDVHMPASWRPLE--SYNYNKEEINQIVCNP-KSSFLACADDGGDVKIIDIR-QHCLYKSLRAGHSSICSS 151 (349)
Q Consensus 76 ~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~v~~ 151 (349)
|+.|+.|++||+++++....+. ...+|...+.+++|++ ++++|++|+.|+.|++||++ ..+.+..+. +|...|.+
T Consensus 176 ~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~-~h~~~v~~ 254 (380)
T 3iz6_a 176 GSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYH-GHEGDINS 254 (380)
T ss_dssp ECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEEC-CCSSCCCE
T ss_pred ECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEEC-CcCCCeEE
Confidence 9999999999999875443332 1256788999999987 78999999999999999998 556777888 89999999
Q ss_pred EEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCC------C
Q 018858 152 VQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTT------K 225 (349)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~ 225 (349)
++|+| ++++|++|+.||+|++||++++.......... .
T Consensus 255 v~~~p------------------------------------~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~ 298 (380)
T 3iz6_a 255 VKFFP------------------------------------DGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNEL 298 (380)
T ss_dssp EEECT------------------------------------TSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSS
T ss_pred EEEec------------------------------------CCCeEEEEcCCCeEEEEECCCCcEEEEeccccccccccc
Confidence 99999 79999999999999999999987766443321 2
Q ss_pred CccceeeeeccccEEEEeeeeeecCc----eeeeeeeee----cCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecC
Q 018858 226 PLKGSQSTSKVNIRDAEMEILDQSGG----KRLHLDYSV----GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS 297 (349)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~----~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~ 297 (349)
..+..++|+|+|+++++ +..++.+. ...+....+ .+|.+.|++++|+ |++++|++|+.|+.|++|++.
T Consensus 299 ~~v~~~~~s~~g~~l~~-g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s---~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 299 PIVTSVAFSISGRLLFA-GYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLS---SDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp CSCSEEEECSSSSEEEE-ECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEEC---SSSSEEEEECTTSCEEEEECC
T ss_pred CceEEEEECCCCCEEEE-EECCCCEEEEECCCCceEEEEecccCCCCCceEEEEEC---CCCCEEEEeeCCCCEEEEecC
Confidence 34789999999999985 32222211 111222222 6799999999999 899999999999999999998
Q ss_pred CC
Q 018858 298 RF 299 (349)
Q Consensus 298 ~~ 299 (349)
..
T Consensus 375 ~~ 376 (380)
T 3iz6_a 375 GH 376 (380)
T ss_dssp SS
T ss_pred CC
Confidence 75
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=255.65 Aligned_cols=278 Identities=15% Similarity=0.149 Sum_probs=227.8
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK 83 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 83 (349)
+++.++.+.+|.+.|.+++|+ ++++++|+.||.|++||+.+++.+..+.+|...|.+++|+ ++.+++++.||.|+
T Consensus 148 ~~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~ 222 (445)
T 2ovr_B 148 TGKCLRTLVGHTGGVWSSQMR---DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLR 222 (445)
T ss_dssp TCCEEEECCCCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEE
T ss_pred CCcEEEEEcCCCCCEEEEEec---CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEE
Confidence 567788999999999999997 4599999999999999999999999999999999999996 56899999999999
Q ss_pred EEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCC
Q 018858 84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
+||+++++ .+..+..|...+.++++ +++++++|+.||.|++||+++++.+..+. +|...+.+++|
T Consensus 223 ~wd~~~~~---~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~--------- 287 (445)
T 2ovr_B 223 VWDIETGQ---CLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQ-GHTNRVYSLQF--------- 287 (445)
T ss_dssp EEESSSCC---EEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEEC-CCSSCEEEEEE---------
T ss_pred EEECCCCc---EEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEec-CCCCceEEEEE---------
Confidence 99999764 34555667889999999 67899999999999999999999999998 89999999998
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
++.++++++.||.|++||+++++........ ...+..+. +++.++++
T Consensus 288 -----------------------------~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~v~~~~--~~~~~l~~- 334 (445)
T 2ovr_B 288 -----------------------------DGIHVVSGSLDTSIRVWDVETGNCIHTLTGH-QSLTSGME--LKDNILVS- 334 (445)
T ss_dssp -----------------------------CSSEEEEEETTSCEEEEETTTCCEEEEECCC-CSCEEEEE--EETTEEEE-
T ss_pred -----------------------------CCCEEEEEeCCCeEEEEECCCCCEEEEEcCC-cccEEEEE--EeCCEEEE-
Confidence 3578999999999999999988776655433 23344444 45666664
Q ss_pred eeeeecC----ceeeeeeeeecC---CCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeec--
Q 018858 244 EILDQSG----GKRLHLDYSVGG---HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKN-- 314 (349)
Q Consensus 244 ~~~~~~~----~~~~~~~~~~~~---h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~-- 314 (349)
+..++.+ ....+.+..+.+ |...|+++.|+ +++|++|+.||.|++||+.+++ .+..+
T Consensus 335 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~l~s~~~dg~v~iwd~~~~~---------~~~~~~~ 400 (445)
T 2ovr_B 335 GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN-----KNFVITSSDDGTVKLWDLKTGE---------FIRNLVT 400 (445)
T ss_dssp EETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC-----SSEEEEEETTSEEEEEETTTCC---------EEEEEEE
T ss_pred EeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC-----CCEEEEEeCCCeEEEEECCCCc---------eeeeeec
Confidence 3333221 122344455554 88899999986 4799999999999999999984 33333
Q ss_pred ---cccccceEEEEeecCCCCcEEEeeCCCe----EEEeeCC
Q 018858 315 ---INLNKKVNWLCTTPTESENLVVCDTSKV----VKVYSIS 349 (349)
Q Consensus 315 ---~~~~~~v~~~~~~~~~~~~l~~~~~dg~----i~iw~~~ 349 (349)
..|.+.|++++|+| ++.++++++.||. |.+||++
T Consensus 401 ~~~~~~~~~v~~~~~s~-~~~~la~~~~dg~~~~~l~v~df~ 441 (445)
T 2ovr_B 401 LESGGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLDFD 441 (445)
T ss_dssp CTTGGGTCEEEEEEECS-SEEEEEEECSSSSSCCEEEEEECC
T ss_pred cccCCCCceEEEEEecC-CEEEEEEcccCCCCccEEEEEECC
Confidence 46888999999988 8889999999997 9999974
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-36 Score=270.94 Aligned_cols=281 Identities=15% Similarity=0.103 Sum_probs=228.9
Q ss_pred CCCeeeeCCcee-eeEEEEec--CCCceEEEeCCCCcEEEEECCCC--------cEEEEeecCCCCeEEEEEecCCCEEE
Q 018858 6 AKPRRLRGHKAT-ATCCIASR--DRPGFVASSGEDGCICWFDLRSK--------DVQLVTDVGNGPVTSLCFKSGNEDII 74 (349)
Q Consensus 6 ~~~~~l~~h~~~-i~~~~~~~--~~~~~l~t~~~dg~i~vwd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~ 74 (349)
+.++.+.+|.+. |++++|+| + +++|++++.||.|++||+.++ +....+..|..+|.+++|+|++++|+
T Consensus 54 ~~~~~~~~h~~~~v~~~~~sp~~~-~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 132 (615)
T 1pgu_A 54 PPVVQFTGHGSSVVTTVKFSPIKG-SQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLC 132 (615)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTT-CCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred ccceEEecCCCceEEEEEECcCCC-CCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEE
Confidence 688899999999 99999999 8 899999999999999999754 56778888999999999999999999
Q ss_pred EEeCC----CeEEEEEccCCCcccceeeccCcccceEEEEEccCCC-EEEEEcCCCcEEEEEcCCceEeceecccccc--
Q 018858 75 YVSSG----KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSS-FLACADDGGDVKIIDIRQHCLYKSLRAGHSS-- 147 (349)
Q Consensus 75 ~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-- 147 (349)
+++.+ +.|++||.. ..+..+..|...|.+++|+|+++ .+++++.|+.|++||+++++.+..+. .|..
T Consensus 133 ~~~~~~~~~~~v~~~d~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~-~~~~~~ 206 (615)
T 1pgu_A 133 VVGEGRDNFGVFISWDSG-----NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR-THHKQG 206 (615)
T ss_dssp EEECCSSCSEEEEETTTC-----CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC-SSSCTT
T ss_pred EeccCCCCccEEEEEECC-----CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeec-ccCCCC
Confidence 99987 688888832 34566677889999999999997 89999999999999999999999998 8888
Q ss_pred -ceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCC-CcEEEEEcCCCeEEEEEccCceeeeecCC---
Q 018858 148 -ICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT-NKICVVAKGDGVVDVINIESELNISRSKS--- 222 (349)
Q Consensus 148 -~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--- 222 (349)
.|.+++|+| + +++|++++.||.|++||+++++.......
T Consensus 207 ~~v~~~~~~~------------------------------------~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 250 (615)
T 1pgu_A 207 SFVRDVEFSP------------------------------------DSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQE 250 (615)
T ss_dssp CCEEEEEECS------------------------------------TTCCEEEEEETTCCEEEEETTTCCEEEECCBTTB
T ss_pred ceEEEEEECC------------------------------------CCCCEEEEEeCCCeEEEEECCCCCEeEEeccccc
Confidence 899999999 7 99999999999999999999887777644
Q ss_pred CCCCccceeeeeccccEEEEeee---eeecCceeeeeeeeecCC----CcceEEEEEeeecCCccEEEEeeCCCeEEEEe
Q 018858 223 TTKPLKGSQSTSKVNIRDAEMEI---LDQSGGKRLHLDYSVGGH----TAAASCVAFSMFGERGKYLISGGNDKLVKVWD 295 (349)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~h----~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd 295 (349)
.....+..++|+ +++++++.+. ...+.....+....+..+ ...+.++.+. +++++++++.|+.|++||
T Consensus 251 ~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~g~i~~~d 325 (615)
T 1pgu_A 251 PVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT----GNGRIISLSLDGTLNFYE 325 (615)
T ss_dssp CCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE----ETTEEEEEETTSCEEEEE
T ss_pred ccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC----CCCeEEEEECCCCEEEEE
Confidence 567889999999 9998886432 111112223344445444 4567778774 788999999999999999
Q ss_pred cCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 296 CSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
+.++ ..+..+.+|...|.+++| | + +++++.||.|++|++
T Consensus 326 ~~~~---------~~~~~~~~~~~~v~~~~~-~-~---l~~~~~dg~i~~w~~ 364 (615)
T 1pgu_A 326 LGHD---------EVLKTISGHNKGITALTV-N-P---LISGSYDGRIMEWSS 364 (615)
T ss_dssp TTEE---------EEEEEECCCSSCEEEEET-T-T---TEEEETTSCEEETTT
T ss_pred CCCC---------cEEEEEeCCCCCEEEEEe-c-C---cEEECCCCeEEEEEc
Confidence 9986 455556667777777777 5 3 666666666666654
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-37 Score=260.09 Aligned_cols=251 Identities=12% Similarity=0.149 Sum_probs=206.5
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC-------cEEEEeecCCCCeEEEEEecCC-CEEEEEe
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK-------DVQLVTDVGNGPVTSLCFKSGN-EDIIYVS 77 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~ 77 (349)
..+..+.+|.+.|++++|+|.++++|++|+.||.|++||+.++ +.+..+.+|...|.+++|+|++ ++|++++
T Consensus 72 ~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~ 151 (402)
T 2aq5_A 72 KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAG 151 (402)
T ss_dssp TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEE
T ss_pred CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEc
Confidence 3566788999999999999933899999999999999999987 5678889999999999999998 6999999
Q ss_pred CCCeEEEEEccCCCcccceeec--cCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEecee-ccccccc-eeEEE
Q 018858 78 SGKEVKSFDVHMPASWRPLESY--NYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSL-RAGHSSI-CSSVQ 153 (349)
Q Consensus 78 ~dg~i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~-v~~~~ 153 (349)
.|+.|++||+++++ .+..+ ..|...|.+++|+|++++|++++.||.|++||+++++.+..+ . .|... +.++.
T Consensus 152 ~dg~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~ 227 (402)
T 2aq5_A 152 CDNVILVWDVGTGA---AVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDR-PHEGTRPVHAV 227 (402)
T ss_dssp TTSCEEEEETTTTE---EEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEEC-SSCSSSCCEEE
T ss_pred CCCEEEEEECCCCC---ccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeecc-CCCCCcceEEE
Confidence 99999999999763 34444 568889999999999999999999999999999999998888 5 67665 89999
Q ss_pred EccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEE---cCCCeEEEEEccCceeeeecCCCCCCccce
Q 018858 154 FIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA---KGDGVVDVINIESELNISRSKSTTKPLKGS 230 (349)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 230 (349)
|+| ++.+|++| +.|+.|++||+++...
T Consensus 228 ~~~------------------------------------~~~~l~~g~~~~~d~~i~iwd~~~~~~-------------- 257 (402)
T 2aq5_A 228 FVS------------------------------------EGKILTTGFSRMSERQVALWDTKHLEE-------------- 257 (402)
T ss_dssp ECS------------------------------------TTEEEEEEECTTCCEEEEEEETTBCSS--------------
T ss_pred EcC------------------------------------CCcEEEEeccCCCCceEEEEcCccccC--------------
Confidence 999 78999999 7999999999986421
Q ss_pred eeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEE-EeeCCCeEEEEecCCCcceecccccc
Q 018858 231 QSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLI-SGGNDKLVKVWDCSRFQGVQTSINND 309 (349)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~~~ 309 (349)
........|...+.++.|+ |++++|+ +++.|+.|++||+.+++.
T Consensus 258 ------------------------~~~~~~~~~~~~v~~~~~s---~~~~~l~~~g~~dg~i~i~d~~~~~~-------- 302 (402)
T 2aq5_A 258 ------------------------PLSLQELDTSSGVLLPFFD---PDTNIVYLCGKGDSSIRYFEITSEAP-------- 302 (402)
T ss_dssp ------------------------CSEEEECCCCSSCEEEEEE---TTTTEEEEEETTCSCEEEEEECSSTT--------
T ss_pred ------------------------CceEEeccCCCceeEEEEc---CCCCEEEEEEcCCCeEEEEEecCCCc--------
Confidence 0001112466779999999 8999886 455799999999998741
Q ss_pred eeeeccc--cccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 310 LLIKNIN--LNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 310 ~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.+..+.. |...|.+++|+| ++.+++ +.|+.+++|++
T Consensus 303 ~~~~l~~~~~~~~v~~~~~sp-~~~~~~--s~~~~~~~~~l 340 (402)
T 2aq5_A 303 FLHYLSMFSSKESQRGMGYMP-KRGLEV--NKCEIARFYKL 340 (402)
T ss_dssp CEEEEEEECCSSCCSEEEECC-GGGSCG--GGTEEEEEEEE
T ss_pred ceEeecccccCCcccceEEec-ccccce--ecceeEEEEEc
Confidence 1222222 568999999988 666654 46779999986
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-36 Score=274.66 Aligned_cols=249 Identities=19% Similarity=0.228 Sum_probs=204.4
Q ss_pred CCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEE
Q 018858 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFD 86 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 86 (349)
..+.+.+|...|.+++|+|+ +++|++|+.||+|++||+.+++....+.+|...|.+++|+|++++|++++.|+.|++||
T Consensus 422 ~~~~~~~h~~~v~~v~~s~~-g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd 500 (694)
T 3dm0_A 422 AQRRLTGHSHFVEDVVLSSD-GQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN 500 (694)
T ss_dssp EEEEEECCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ccceecCCCCcEEEEEECCC-CCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEE
Confidence 45678999999999999998 89999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcccceeeccCcccceEEEEEccCC--CEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCC
Q 018858 87 VHMPASWRPLESYNYNKEEINQIVCNPKS--SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLP 164 (349)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 164 (349)
..............+|...|.+++|+|++ ..+++++.|+.|++||+++++....+. +|...|.+++|+|
T Consensus 501 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~-~h~~~v~~v~~sp-------- 571 (694)
T 3dm0_A 501 TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA-GHTGYVSTVAVSP-------- 571 (694)
T ss_dssp TTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECT--------
T ss_pred CCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEc-CCCCCEEEEEEeC--------
Confidence 86432222223345678889999999986 589999999999999999999988998 9999999999999
Q ss_pred CCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEee
Q 018858 165 ENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME 244 (349)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (349)
++++|++|+.||.|++||+++++....... ...+..++|+|++.++++..
T Consensus 572 ----------------------------dg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~--~~~v~~~~~sp~~~~l~~~~ 621 (694)
T 3dm0_A 572 ----------------------------DGSLCASGGKDGVVLLWDLAEGKKLYSLEA--NSVIHALCFSPNRYWLCAAT 621 (694)
T ss_dssp ----------------------------TSSEEEEEETTSBCEEEETTTTEEEECCBC--SSCEEEEEECSSSSEEEEEE
T ss_pred ----------------------------CCCEEEEEeCCCeEEEEECCCCceEEEecC--CCcEEEEEEcCCCcEEEEEc
Confidence 899999999999999999999887665543 45688999999999988632
Q ss_pred eeee--cCceeeeeeeeecC-------------------CCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCC
Q 018858 245 ILDQ--SGGKRLHLDYSVGG-------------------HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR 298 (349)
Q Consensus 245 ~~~~--~~~~~~~~~~~~~~-------------------h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 298 (349)
.... +.......+..+.. +...+++++|+ |+|++|++|+.||.|+||++..
T Consensus 622 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s---pdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 622 EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWS---ADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEEC---TTSSEEEEEETTSEEEEEEC--
T ss_pred CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEc---CCCCEEEEEcCCCeEEEEeccC
Confidence 2111 11111112222211 11247889999 9999999999999999999864
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-36 Score=253.22 Aligned_cols=208 Identities=15% Similarity=0.170 Sum_probs=180.6
Q ss_pred eeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCC-EEEEEeCCCeEEEEEcc
Q 018858 10 RLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNE-DIIYVSSGKEVKSFDVH 88 (349)
Q Consensus 10 ~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~ 88 (349)
.+.+|.+.|++++|+|+ +++|++|+.|+.|++||+++++.+..+.+|...|.+++|+|+++ ++++++.|+.|++||++
T Consensus 134 ~~~~h~~~V~~v~~spd-g~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~ 212 (357)
T 4g56_B 134 AKYEHDDIVKTLSVFSD-GTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTR 212 (357)
T ss_dssp EECCCSSCEEEEEECSS-SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTT
T ss_pred ccCCCCCCEEEEEECCC-CCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECC
Confidence 34589999999999998 89999999999999999999999999999999999999999875 78899999999999999
Q ss_pred CCCcccceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCC
Q 018858 89 MPASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENN 167 (349)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 167 (349)
+++....+. ...+...+.+++|+|++ .+|++|+.|+.|++||+++++.+..+. +|...|.+++|+|+
T Consensus 213 ~~~~~~~~~-~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~-~~~~~v~~l~~sp~---------- 280 (357)
T 4g56_B 213 KPKPATRID-FCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA-VHSQNITGLAYSYH---------- 280 (357)
T ss_dssp SSSCBCBCC-CTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEEC-CCSSCEEEEEECSS----------
T ss_pred CCceeeeee-eccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEe-ccceeEEEEEEcCC----------
Confidence 875443332 33456789999999975 688999999999999999999988998 89999999999993
Q ss_pred CCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeee
Q 018858 168 GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD 247 (349)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (349)
.+++|++|+.|++|++||++++
T Consensus 281 -------------------------~~~~lasgs~D~~i~iwd~~~~--------------------------------- 302 (357)
T 4g56_B 281 -------------------------SSPFLASISEDCTVAVLDADFS--------------------------------- 302 (357)
T ss_dssp -------------------------SSCCEEEEETTSCEEEECTTSC---------------------------------
T ss_pred -------------------------CCCEEEEEeCCCEEEEEECCCC---------------------------------
Confidence 3468999999999999999874
Q ss_pred ecCceeeeeeeeecCCCcceEEEEEeeecC-CccEEEEeeCCCeEEEEecCCC
Q 018858 248 QSGGKRLHLDYSVGGHTAAASCVAFSMFGE-RGKYLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 248 ~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~ 299 (349)
+++. ..+|...|++++|+ | ++++|++++.|++|++|++.+.
T Consensus 303 -------~~~~-~~~H~~~V~~vafs---P~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 303 -------EVFR-DLSHRDFVTGVAWS---PLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp -------EEEE-ECCCSSCEEEEEEC---SSSTTEEEEEETTSCEEEEECC--
T ss_pred -------cEeE-ECCCCCCEEEEEEe---CCCCCEEEEEcCCCeEEEEECCCC
Confidence 2222 34799999999999 6 7899999999999999999774
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-36 Score=255.68 Aligned_cols=245 Identities=14% Similarity=0.229 Sum_probs=202.0
Q ss_pred eeeEEEEecCCCceEEEeCCCCcEEEEECCCCc----EEEEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEEccCCC
Q 018858 17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKD----VQLVTDVGNGPVTSLCFKS-GNEDIIYVSSGKEVKSFDVHMPA 91 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~ 91 (349)
....++++|+...++++++.||.|++|++.... .+..+.+|...|.+++|+| ++++|++++.||.|++||+.++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 345578888733455568899999999996542 3456778999999999999 99999999999999999998763
Q ss_pred cc----cceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCceEecee--ccccccceeEEEEccCCCCCCCC
Q 018858 92 SW----RPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYKSL--RAGHSSICSSVQFIPWKPWEGLP 164 (349)
Q Consensus 92 ~~----~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~ 164 (349)
.. ..+..+.+|...|.+++|+|++ ++|++++.|+.|++||+++++.+..+ . .|...|.+++|+|
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~-------- 186 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPD-VHPDTIYSVDWSR-------- 186 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTT-TCCSCEEEEEECT--------
T ss_pred CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecC-CCCCceEEEEECC--------
Confidence 22 3455667788999999999998 69999999999999999999998888 6 8999999999999
Q ss_pred CCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEee
Q 018858 165 ENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME 244 (349)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (349)
++++|++++.||.|++||++++
T Consensus 187 ----------------------------~~~~l~~~~~d~~i~iwd~~~~------------------------------ 208 (402)
T 2aq5_A 187 ----------------------------DGALICTSCRDKRVRVIEPRKG------------------------------ 208 (402)
T ss_dssp ----------------------------TSSCEEEEETTSEEEEEETTTT------------------------------
T ss_pred ----------------------------CCCEEEEEecCCcEEEEeCCCC------------------------------
Confidence 7899999999999999999975
Q ss_pred eeeecCceeeeeeeee-cCCCcc-eEEEEEeeecCCccEEEEe---eCCCeEEEEecCCCcceecccccceeeecccccc
Q 018858 245 ILDQSGGKRLHLDYSV-GGHTAA-ASCVAFSMFGERGKYLISG---GNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK 319 (349)
Q Consensus 245 ~~~~~~~~~~~~~~~~-~~h~~~-i~~i~~~~~~~~~~~l~s~---~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 319 (349)
..+..+ .+|.+. +.++.|+ |++++|++| +.|+.|++||+.+... ........|..
T Consensus 209 ----------~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~g~~~~~d~~i~iwd~~~~~~-------~~~~~~~~~~~ 268 (402)
T 2aq5_A 209 ----------TVVAEKDRPHEGTRPVHAVFV---SEGKILTTGFSRMSERQVALWDTKHLEE-------PLSLQELDTSS 268 (402)
T ss_dssp ----------EEEEEEECSSCSSSCCEEEEC---STTEEEEEEECTTCCEEEEEEETTBCSS-------CSEEEECCCCS
T ss_pred ----------ceeeeeccCCCCCcceEEEEc---CCCcEEEEeccCCCCceEEEEcCccccC-------CceEEeccCCC
Confidence 344455 567665 8999999 899999999 7999999999988642 12223345778
Q ss_pred ceEEEEeecCCCCcEEEe-eCCCeEEEeeCC
Q 018858 320 KVNWLCTTPTESENLVVC-DTSKVVKVYSIS 349 (349)
Q Consensus 320 ~v~~~~~~~~~~~~l~~~-~~dg~i~iw~~~ 349 (349)
.+.+++|+| ++++|+++ +.||.|++|++.
T Consensus 269 ~v~~~~~s~-~~~~l~~~g~~dg~i~i~d~~ 298 (402)
T 2aq5_A 269 GVLLPFFDP-DTNIVYLCGKGDSSIRYFEIT 298 (402)
T ss_dssp SCEEEEEET-TTTEEEEEETTCSCEEEEEEC
T ss_pred ceeEEEEcC-CCCEEEEEEcCCCeEEEEEec
Confidence 899999988 77777654 579999999974
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=244.17 Aligned_cols=252 Identities=13% Similarity=0.124 Sum_probs=214.7
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCC----
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG---- 79 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---- 79 (349)
+++.++.+.+|...|.+++|+|+ +++|++++.||.|++||+.+++.+..+. +...|.+++|+|+++++++++.+
T Consensus 63 ~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~ 140 (369)
T 3zwl_B 63 NGERLGTLDGHTGTIWSIDVDCF-TKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKN 140 (369)
T ss_dssp TCCEEEEECCCSSCEEEEEECTT-SSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTB
T ss_pred CchhhhhhhhcCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCC
Confidence 56778889999999999999998 8999999999999999999999988888 88999999999999999999998
Q ss_pred -CeEEEEEccCCCcccc--------eeeccCccc--ceEEEEEccCCCEEEEEcCCCcEEEEEcCC-ceEeceecccccc
Q 018858 80 -KEVKSFDVHMPASWRP--------LESYNYNKE--EINQIVCNPKSSFLACADDGGDVKIIDIRQ-HCLYKSLRAGHSS 147 (349)
Q Consensus 80 -g~i~iwd~~~~~~~~~--------~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~ 147 (349)
+.|++||+........ +..+..+.. .+.+++|+|++++|++++.||.|++||+++ .+.+..+. .|..
T Consensus 141 ~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~ 219 (369)
T 3zwl_B 141 PGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSID-LHEK 219 (369)
T ss_dssp CCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEE-CCSS
T ss_pred CCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEe-cCCC
Confidence 9999999986543222 222233334 899999999999999999999999999998 78888888 8999
Q ss_pred ceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCc
Q 018858 148 ICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPL 227 (349)
Q Consensus 148 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 227 (349)
.|.+++|+| ++++|++++.||.|++||+++.+...... ....
T Consensus 220 ~v~~~~~~~------------------------------------~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~ 261 (369)
T 3zwl_B 220 SISDMQFSP------------------------------------DLTYFITSSRDTNSFLVDVSTLQVLKKYE--TDCP 261 (369)
T ss_dssp CEEEEEECT------------------------------------TSSEEEEEETTSEEEEEETTTCCEEEEEE--CSSC
T ss_pred ceeEEEECC------------------------------------CCCEEEEecCCceEEEEECCCCceeeeec--CCCC
Confidence 999999999 79999999999999999999887766555 4567
Q ss_pred cceeeeeccccEEEEeeeeee-----------------cCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCe
Q 018858 228 KGSQSTSKVNIRDAEMEILDQ-----------------SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKL 290 (349)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~ 290 (349)
+..++|+|+++++++.+.... ........+..+.+|...|++++|+ |++++|++++.||.
T Consensus 262 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s---~~~~~l~s~~~dg~ 338 (369)
T 3zwl_B 262 LNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAIS---PQGTSYASGGEDGF 338 (369)
T ss_dssp EEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEEC---TTSSEEEEEETTSE
T ss_pred ceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEEC---CCCCEEEEEcCCCe
Confidence 889999999999996443221 1111234556778899999999999 89999999999999
Q ss_pred EEEEecCCC
Q 018858 291 VKVWDCSRF 299 (349)
Q Consensus 291 i~vwd~~~~ 299 (349)
|++|+++..
T Consensus 339 v~iw~~~~~ 347 (369)
T 3zwl_B 339 IRLHHFEKS 347 (369)
T ss_dssp EEEEEECHH
T ss_pred EEEEECccc
Confidence 999999875
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-35 Score=248.98 Aligned_cols=240 Identities=17% Similarity=0.213 Sum_probs=199.7
Q ss_pred eCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeec-CCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 018858 12 RGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDV-GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP 90 (349)
Q Consensus 12 ~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 90 (349)
.+|...+.+.+++++ +..+++++.|+.|++||+.+++....+.. |...|.+++|+|++++|++++.||.|++||+.++
T Consensus 88 ~~~~~~~~~~~~~~s-~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 166 (401)
T 4aez_A 88 PGIIDDYYLNLLDWS-NLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ 166 (401)
T ss_dssp TTCCCCTTCBCEEEC-TTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred CCCcCCceEEEEeec-CCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC
Confidence 367666544444444 35688888999999999999998777766 7899999999999999999999999999999876
Q ss_pred CcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcC-CceEeceeccccccceeEEEEccCCCCCCCCCCCCC
Q 018858 91 ASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIR-QHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGN 169 (349)
Q Consensus 91 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 169 (349)
+ .+..+..|...|.+++|+ +++|++++.||.|++||++ .......+. .|...|.+++|+|
T Consensus 167 ~---~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~------------- 227 (401)
T 4aez_A 167 T---KLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQ-GHSSEVCGLAWRS------------- 227 (401)
T ss_dssp C---EEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEE-CCSSCEEEEEECT-------------
T ss_pred e---EEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEc-CCCCCeeEEEEcC-------------
Confidence 4 445566788999999994 5799999999999999999 566677788 8999999999999
Q ss_pred CccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeec
Q 018858 170 AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS 249 (349)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (349)
++++|++++.||.|++||+++.
T Consensus 228 -----------------------~~~~l~s~~~d~~v~iwd~~~~----------------------------------- 249 (401)
T 4aez_A 228 -----------------------DGLQLASGGNDNVVQIWDARSS----------------------------------- 249 (401)
T ss_dssp -----------------------TSSEEEEEETTSCEEEEETTCS-----------------------------------
T ss_pred -----------------------CCCEEEEEeCCCeEEEccCCCC-----------------------------------
Confidence 7999999999999999999974
Q ss_pred CceeeeeeeeecCCCcceEEEEEeeecCCc-cEEEEee--CCCeEEEEecCCCcceecccccceeeeccccccceEEEEe
Q 018858 250 GGKRLHLDYSVGGHTAAASCVAFSMFGERG-KYLISGG--NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCT 326 (349)
Q Consensus 250 ~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~-~~l~s~~--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 326 (349)
.....+..|...|.+++|+ |++ .++++++ .|+.|++||+.++ ..+..+ .+...|.+++|
T Consensus 250 -----~~~~~~~~~~~~v~~~~~~---p~~~~ll~~~~gs~d~~i~i~d~~~~---------~~~~~~-~~~~~v~~~~~ 311 (401)
T 4aez_A 250 -----IPKFTKTNHNAAVKAVAWC---PWQSNLLATGGGTMDKQIHFWNAATG---------ARVNTV-DAGSQVTSLIW 311 (401)
T ss_dssp -----SEEEEECCCSSCCCEEEEC---TTSTTEEEEECCTTTCEEEEEETTTC---------CEEEEE-ECSSCEEEEEE
T ss_pred -----CccEEecCCcceEEEEEEC---CCCCCEEEEecCCCCCEEEEEECCCC---------CEEEEE-eCCCcEEEEEE
Confidence 4455677899999999999 755 5666665 7999999999987 333333 46678999999
Q ss_pred ecCCCCcEEEe--eCCCeEEEeeC
Q 018858 327 TPTESENLVVC--DTSKVVKVYSI 348 (349)
Q Consensus 327 ~~~~~~~l~~~--~~dg~i~iw~~ 348 (349)
+| ++++++++ +.||.|++|++
T Consensus 312 s~-~~~~l~~~~g~~dg~i~v~~~ 334 (401)
T 4aez_A 312 SP-HSKEIMSTHGFPDNNLSIWSY 334 (401)
T ss_dssp CS-SSSEEEEEECTTTCEEEEEEE
T ss_pred CC-CCCeEEEEeecCCCcEEEEec
Confidence 88 78888885 48999999996
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=249.03 Aligned_cols=231 Identities=19% Similarity=0.290 Sum_probs=202.0
Q ss_pred eCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 018858 12 RGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA 91 (349)
Q Consensus 12 ~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 91 (349)
.+|...|.|+.+ + +++|++|+.||.|++||+.+++....+.+|...|.+++| ++++|++|+.||.|++||+++++
T Consensus 130 ~~~~~~v~~~~~--d-~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~ 204 (435)
T 1p22_A 130 SETSKGVYCLQY--D-DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE 204 (435)
T ss_dssp CSSCCCEEEEEC--C-SSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC
T ss_pred cCCCCcEEEEEE--C-CCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCc
Confidence 456778999887 4 789999999999999999999999999999999999998 68899999999999999999764
Q ss_pred cccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEe---ceeccccccceeEEEEccCCCCCCCCCCCC
Q 018858 92 SWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLY---KSLRAGHSSICSSVQFIPWKPWEGLPENNG 168 (349)
Q Consensus 92 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 168 (349)
.+..+..|...|.+++|++ .++++|+.||.|++||+++++.. ..+. +|...|.+++|.
T Consensus 205 ---~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~~~~v~~~~~~------------- 265 (435)
T 1p22_A 205 ---MLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLV-GHRAAVNVVDFD------------- 265 (435)
T ss_dssp ---EEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEEC-CCSSCEEEEEEE-------------
T ss_pred ---EEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEec-CCCCcEEEEEeC-------------
Confidence 4455667889999999974 59999999999999999977654 5566 788899999883
Q ss_pred CCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeee
Q 018858 169 NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ 248 (349)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (349)
++++++|+.||.|++||++++
T Consensus 266 -------------------------~~~l~s~~~dg~i~vwd~~~~---------------------------------- 286 (435)
T 1p22_A 266 -------------------------DKYIVSASGDRTIKVWNTSTC---------------------------------- 286 (435)
T ss_dssp -------------------------TTEEEEEETTSEEEEEETTTC----------------------------------
T ss_pred -------------------------CCEEEEEeCCCeEEEEECCcC----------------------------------
Confidence 578999999999999999974
Q ss_pred cCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeec
Q 018858 249 SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP 328 (349)
Q Consensus 249 ~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 328 (349)
..+..+.+|...|.++.++ ++++++|+.||.|++||++++ ..+..+.+|...|.++++
T Consensus 287 ------~~~~~~~~~~~~v~~~~~~-----~~~l~~g~~dg~i~iwd~~~~---------~~~~~~~~h~~~v~~~~~-- 344 (435)
T 1p22_A 287 ------EFVRTLNGHKRGIACLQYR-----DRLVVSGSSDNTIRLWDIECG---------ACLRVLEGHEELVRCIRF-- 344 (435)
T ss_dssp ------CEEEEEECCSSCEEEEEEE-----TTEEEEEETTSCEEEEETTTC---------CEEEEECCCSSCEEEEEC--
T ss_pred ------cEEEEEcCCCCcEEEEEeC-----CCEEEEEeCCCeEEEEECCCC---------CEEEEEeCCcCcEEEEEe--
Confidence 4556777899999999875 579999999999999999987 667778889999999998
Q ss_pred CCCCcEEEeeCCCeEEEeeC
Q 018858 329 TESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 329 ~~~~~l~~~~~dg~i~iw~~ 348 (349)
++++|++++.||.|++||+
T Consensus 345 -~~~~l~sg~~dg~i~vwd~ 363 (435)
T 1p22_A 345 -DNKRIVSGAYDGKIKVWDL 363 (435)
T ss_dssp -CSSEEEEEETTSCEEEEEH
T ss_pred -cCCEEEEEeCCCcEEEEEC
Confidence 5669999999999999996
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-35 Score=239.21 Aligned_cols=221 Identities=16% Similarity=0.123 Sum_probs=181.1
Q ss_pred CCCCeeeeCCceeeeEEEEecC-CCceEEEeCCCCcEEEEECCCCc--EEEEeecCCCCeEEEEEecC--CCEEEEEeCC
Q 018858 5 EAKPRRLRGHKATATCCIASRD-RPGFVASSGEDGCICWFDLRSKD--VQLVTDVGNGPVTSLCFKSG--NEDIIYVSSG 79 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~-~~~~l~t~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d 79 (349)
.+.+++|.+|.++|++++|+|+ ++++|++|+.|++|++||+++++ .+..+..|...|.+++|+|+ +.+|++++.|
T Consensus 43 ~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d 122 (297)
T 2pm7_B 43 HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSD 122 (297)
T ss_dssp BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred cEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECC
Confidence 4678899999999999999863 37899999999999999998774 45677889999999999997 8899999999
Q ss_pred CeEEEEEccCCCcccceeeccCcccceEEEEEccC-------------CCEEEEEcCCCcEEEEEcCCce----Eeceec
Q 018858 80 KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK-------------SSFLACADDGGDVKIIDIRQHC----LYKSLR 142 (349)
Q Consensus 80 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------------~~~l~~~~~dg~i~i~d~~~~~----~~~~~~ 142 (349)
+.|++||++++.... ...+..|...|.+++|+|+ +++|++|+.|+.|++||+++++ ....+.
T Consensus 123 ~~v~~wd~~~~~~~~-~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~ 201 (297)
T 2pm7_B 123 GKVSVVEFKENGTTS-PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE 201 (297)
T ss_dssp SEEEEEEBCSSSCBC-CEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEEC
T ss_pred CcEEEEEecCCCcee-eeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEec
Confidence 999999998653221 2445678889999999997 4799999999999999998754 556777
Q ss_pred cccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCC
Q 018858 143 AGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS 222 (349)
Q Consensus 143 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 222 (349)
+|...|.+++|+|++. .+.+|++++.|++|++||++.....
T Consensus 202 -~H~~~V~~v~~sp~~~---------------------------------~~~~las~s~D~~v~iWd~~~~~~~----- 242 (297)
T 2pm7_B 202 -GHSDWVRDVAWSPTVL---------------------------------LRSYMASVSQDRTCIIWTQDNEQGP----- 242 (297)
T ss_dssp -CCSSCEEEEEECCCCS---------------------------------SSEEEEEEETTSCEEEEEESSTTSC-----
T ss_pred -CCCCceEEEEECCCCC---------------------------------CceEEEEEECCCcEEEEEeCCCCCc-----
Confidence 8999999999999310 1589999999999999999853100
Q ss_pred CCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCC
Q 018858 223 TTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR 298 (349)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 298 (349)
..........|...|.+++|+ |++++|++++.|+.|++|+...
T Consensus 243 ------------------------------~~~~~~~~~~~~~~v~~~~~s---~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 243 ------------------------------WKKTLLKEEKFPDVLWRASWS---LSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp ------------------------------CEEEESSSSCCSSCEEEEEEC---SSSCCEEEEETTSCEEEEEECT
T ss_pred ------------------------------cceeeeecccCCCcEEEEEEC---CCCCEEEEEcCCCcEEEEEECC
Confidence 000111124577899999999 8999999999999999999864
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=243.79 Aligned_cols=251 Identities=12% Similarity=0.075 Sum_probs=205.8
Q ss_pred CCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEE--eecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLV--TDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
.++.+.+|...|.+++|+|+ +++|++++.||.|++||+++++.... +..|...|.+++|+|++++|++++.|+.|++
T Consensus 44 ~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i 122 (372)
T 1k8k_C 44 QVHELKEHNGQVTGVDWAPD-SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISI 122 (372)
T ss_dssp EEEEEECCSSCEEEEEEETT-TTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEE
T ss_pred eeeeecCCCCcccEEEEeCC-CCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEE
Confidence 77889999999999999998 89999999999999999988875443 4668999999999999999999999999999
Q ss_pred EEccCCCcccceee-ccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcC------------------CceEeceecccc
Q 018858 85 FDVHMPASWRPLES-YNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIR------------------QHCLYKSLRAGH 145 (349)
Q Consensus 85 wd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~------------------~~~~~~~~~~~~ 145 (349)
||++.+........ ...|...+.+++|+|++++|++++.||.|++||++ .++.+..+. .|
T Consensus 123 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 201 (372)
T 1k8k_C 123 CYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-SS 201 (372)
T ss_dssp EEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-CC
T ss_pred EEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecC-CC
Confidence 99997653333333 35567899999999999999999999999999954 567778887 78
Q ss_pred ccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCC
Q 018858 146 SSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTK 225 (349)
Q Consensus 146 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 225 (349)
...+.+++|+| ++++|++++.||.|++||+++++....... ..
T Consensus 202 ~~~v~~~~~~~------------------------------------~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~ 244 (372)
T 1k8k_C 202 CGWVHGVCFSA------------------------------------NGSRVAWVSHDSTVCLADADKKMAVATLAS-ET 244 (372)
T ss_dssp SSCEEEEEECS------------------------------------SSSEEEEEETTTEEEEEEGGGTTEEEEEEC-SS
T ss_pred CCeEEEEEECC------------------------------------CCCEEEEEeCCCEEEEEECCCCceeEEEcc-CC
Confidence 88999999999 789999999999999999998876665543 35
Q ss_pred CccceeeeeccccEEEEeeeeeecCce----e----------------------------------eeee------eee-
Q 018858 226 PLKGSQSTSKVNIRDAEMEILDQSGGK----R----------------------------------LHLD------YSV- 260 (349)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~----------------------------------~~~~------~~~- 260 (349)
..+..++|+|+++++++. .+..+.. . .... ..+
T Consensus 245 ~~v~~~~~~~~~~~l~~~--~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (372)
T 1k8k_C 245 LPLLAVTFITESSLVAAG--HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLD 322 (372)
T ss_dssp CCEEEEEEEETTEEEEEE--TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCS
T ss_pred CCeEEEEEecCCCEEEEE--eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccccccc
Confidence 578899999999988853 2221110 0 0000 223
Q ss_pred cCCCcceEEEEEeeecCCc---cEEEEeeCCCeEEEEecCCCc
Q 018858 261 GGHTAAASCVAFSMFGERG---KYLISGGNDKLVKVWDCSRFQ 300 (349)
Q Consensus 261 ~~h~~~i~~i~~~~~~~~~---~~l~s~~~d~~i~vwd~~~~~ 300 (349)
.+|...|++++|.+ ++| ++|++++.||.|++||+++.+
T Consensus 323 ~~h~~~v~~~~~~~--~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 323 SLHKNSVSQISVLS--GGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp SSSSSCEEEEEEEE--STTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred ccccCCcceeEEec--CCCcceeeEEEecCCCceEEEEecChh
Confidence 48999999999775 676 999999999999999998753
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-36 Score=251.76 Aligned_cols=249 Identities=12% Similarity=0.052 Sum_probs=188.4
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc---EEEEeecCCCCeEEEEEecCCCEEEEEeCCCeE
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD---VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEV 82 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 82 (349)
+.++.+.+|.+.|++++|+|+ +++|++++.|+.|++||+.+++ ....+..|...|.+++|+|++++|++++.|+.|
T Consensus 46 ~~~~~~~~h~~~v~~~~~s~~-~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 124 (377)
T 3dwl_C 46 KHARTFSDHDKIVTCVDWAPK-SNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVI 124 (377)
T ss_dssp EECCCBCCCSSCEEEEEECTT-TCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCE
T ss_pred EEEEEEecCCceEEEEEEeCC-CCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeE
Confidence 577889999999999999998 8999999999999999999876 567788899999999999999999999999999
Q ss_pred EEEEccCCCcccceeeccC-cccceEEEEEccCCCEEEEEcCCCcEEEEEcC------------------CceEeceecc
Q 018858 83 KSFDVHMPASWRPLESYNY-NKEEINQIVCNPKSSFLACADDGGDVKIIDIR------------------QHCLYKSLRA 143 (349)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~------------------~~~~~~~~~~ 143 (349)
++||+++++.......+.. |...|.+++|+|++++|++++.|+.|++||++ .++++..+
T Consensus 125 ~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 202 (377)
T 3dwl_C 125 SVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-- 202 (377)
T ss_dssp EECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--
T ss_pred EEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc--
Confidence 9999997654344556666 88999999999999999999999999999985 24444444
Q ss_pred ccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceee---eec
Q 018858 144 GHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI---SRS 220 (349)
Q Consensus 144 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~ 220 (349)
.|...|.+++|+| ++++|++++.||.|++||+++++.. ...
T Consensus 203 ~~~~~v~~~~~sp------------------------------------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 246 (377)
T 3dwl_C 203 PSGGWVHAVGFSP------------------------------------SGNALAYAGHDSSVTIAYPSAPEQPPRALIT 246 (377)
T ss_dssp CCSSSEEEEEECT------------------------------------TSSCEEEEETTTEEC-CEECSTTSCEEECCC
T ss_pred cCCceEEEEEECC------------------------------------CCCEEEEEeCCCcEEEEECCCCCCcceeeEe
Confidence 5778899999998 7899999999999999999987652 112
Q ss_pred CCCCCCccceeeeeccccEEEEeeeeeecCce-----e----------------------------e---------eee-
Q 018858 221 KSTTKPLKGSQSTSKVNIRDAEMEILDQSGGK-----R----------------------------L---------HLD- 257 (349)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----------------------------~---------~~~- 257 (349)
.......+..++|+|+++++++.. .+....- . . ...
T Consensus 247 ~~~~~~~v~~~~~s~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (377)
T 3dwl_C 247 VKLSQLPLRSLLWANESAIVAAGY-NYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFR 325 (377)
T ss_dssp EECSSSCEEEEEEEETTEEEEEES-SSSEEEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC--------------
T ss_pred ecCCCCceEEEEEcCCCCEEEEEc-CCcEEEEEeCCCceEEEeeeccccccccccccccccccccccccccccccccccc
Confidence 223456788999999999988632 1110000 0 0 000
Q ss_pred ------------eeecCCCcceEEEEEeeecCCcc---EEEEeeCCCeEEEEec
Q 018858 258 ------------YSVGGHTAAASCVAFSMFGERGK---YLISGGNDKLVKVWDC 296 (349)
Q Consensus 258 ------------~~~~~h~~~i~~i~~~~~~~~~~---~l~s~~~d~~i~vwd~ 296 (349)
.....|...|+++.+.+ +++. .|+|++.||.|++||+
T Consensus 326 ~~~~~g~~~~~~~~~~~H~~~i~~~~~~~--~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 326 NMDLKGSSQSISSLPTVHQNMIATLRPYA--GTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp -----------CCCSSSCSSCEEEEEEEE--EETTEEEEEEEEETTSEEEEECC
T ss_pred chhhccccccccccCccccceeEEEeccC--CCCCceEEEEeecCCCcEEEecC
Confidence 01123899999999773 3333 7999999999999985
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-35 Score=254.17 Aligned_cols=256 Identities=13% Similarity=0.204 Sum_probs=197.6
Q ss_pred CCeeeeCCc------------eeeeEEEEecCCC--ceEEEeCCCCcEEEEECCCCcEE---------------------
Q 018858 7 KPRRLRGHK------------ATATCCIASRDRP--GFVASSGEDGCICWFDLRSKDVQ--------------------- 51 (349)
Q Consensus 7 ~~~~l~~h~------------~~i~~~~~~~~~~--~~l~t~~~dg~i~vwd~~~~~~~--------------------- 51 (349)
....+++|. +.|++++|+|+ + .+|++++.|+.|++||+.+++..
T Consensus 73 ~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~-~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 151 (447)
T 3dw8_B 73 VYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ-KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTT 151 (447)
T ss_dssp EEEEEECCCCEEEGGGTEEECCCCCEEEECCC-CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCS
T ss_pred EecccccccccccccccccccCceEEEEEcCC-CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccc
Confidence 477889998 88999999998 5 78999999999999998764331
Q ss_pred ------------------EE-eecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCC-cccce----eeccCcccceE
Q 018858 52 ------------------LV-TDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA-SWRPL----ESYNYNKEEIN 107 (349)
Q Consensus 52 ------------------~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~----~~~~~~~~~v~ 107 (349)
.. ..+|...|.+++|+|++++|+++ .|+.|++||+++.. ....+ ..+..|...|.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 230 (447)
T 3dw8_B 152 LRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVIT 230 (447)
T ss_dssp CCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEE
T ss_pred eEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceE
Confidence 12 35799999999999999999998 79999999998422 11111 13556888999
Q ss_pred EEEEccCC-CEEEEEcCCCcEEEEEcCCceE----eceecccccc------------ceeEEEEccCCCCCCCCCCCCCC
Q 018858 108 QIVCNPKS-SFLACADDGGDVKIIDIRQHCL----YKSLRAGHSS------------ICSSVQFIPWKPWEGLPENNGNA 170 (349)
Q Consensus 108 ~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~------------~v~~~~~~~~~~~~~~~~~~~~~ 170 (349)
+++|+|++ ++|++|+.||.|++||+++++. ...+. .|.. .|.+++|+|
T Consensus 231 ~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~-------------- 295 (447)
T 3dw8_B 231 AAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFE-EPEDPSNRSFFSEIISSISDVKFSH-------------- 295 (447)
T ss_dssp EEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEEC-CC-----CCHHHHHTTCEEEEEECT--------------
T ss_pred EEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEec-cCCCccccccccccCceEEEEEECC--------------
Confidence 99999998 9999999999999999998876 56666 6654 899999999
Q ss_pred ccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC-ceeeeecCCCCCCccceeeeeccccEEEEeeeeeec
Q 018858 171 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES-ELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS 249 (349)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (349)
++++|++++. +.|++||++. +
T Consensus 296 ----------------------~g~~l~~~~~-~~v~iwd~~~~~----------------------------------- 317 (447)
T 3dw8_B 296 ----------------------SGRYMMTRDY-LSVKVWDLNMEN----------------------------------- 317 (447)
T ss_dssp ----------------------TSSEEEEEES-SEEEEEETTCCS-----------------------------------
T ss_pred ----------------------CCCEEEEeeC-CeEEEEeCCCCc-----------------------------------
Confidence 8999999998 9999999986 3
Q ss_pred CceeeeeeeeecCCCc---------------ceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceeccccc------
Q 018858 250 GGKRLHLDYSVGGHTA---------------AASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINN------ 308 (349)
Q Consensus 250 ~~~~~~~~~~~~~h~~---------------~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~------ 308 (349)
.++..+.+|.. .+..++|+ |++++|++|+.||.|++||+.+++........
T Consensus 318 -----~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s---~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 389 (447)
T 3dw8_B 318 -----RPVETYQVHEYLRSKLCSLYENDCIFDKFECCWN---GSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPR 389 (447)
T ss_dssp -----SCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEEC---TTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTT
T ss_pred -----cccceeeccccccccccccccccccccceEEEEC---CCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccc
Confidence 23344444432 13358999 89999999999999999999987543211000
Q ss_pred -----------------ceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 309 -----------------DLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 309 -----------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
........+...|..++|+| ++++|++++.++ +++|.
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p-~~~~la~~~~~~-~~~~~ 443 (447)
T 3dw8_B 390 TVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHP-KENIIAVATTNN-LYIFQ 443 (447)
T ss_dssp CBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECS-SSSEEEEECSSC-EEEEE
T ss_pred cccCCccccccCCcccccccccccccCCceeEEEECC-CCCEEEEEecce-eeeec
Confidence 01111224566899999999 788888887776 77775
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-34 Score=263.93 Aligned_cols=300 Identities=12% Similarity=0.099 Sum_probs=236.3
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK 83 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 83 (349)
+++.++.+.+|..+|++++|+|+ +++|++++.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|+
T Consensus 44 ~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 122 (814)
T 3mkq_A 44 TQVEVRSIQVTETPVRAGKFIAR-KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122 (814)
T ss_dssp TTEEEEEEECCSSCEEEEEEEGG-GTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred CCceEEEEecCCCcEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEE
Confidence 46678899999999999999998 89999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCcccceeeccCcccceEEEEEcc-CCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCC
Q 018858 84 SFDVHMPASWRPLESYNYNKEEINQIVCNP-KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEG 162 (349)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 162 (349)
+||++++. .....+..|...+.+++|+| ++..|++++.||.|++||+++++....+...+...+.+++|+|.
T Consensus 123 vw~~~~~~--~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~----- 195 (814)
T 3mkq_A 123 LWNWENNW--ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL----- 195 (814)
T ss_dssp EEEGGGTS--EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCS-----
T ss_pred EEECCCCc--eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEEC-----
Confidence 99998652 33455666788999999999 78999999999999999999887777766234488999999982
Q ss_pred CCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEE
Q 018858 163 LPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE 242 (349)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (349)
+++.+|++++.||.|++||+++++....... ....+..++|+|+++++++
T Consensus 196 -----------------------------~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~ 245 (814)
T 3mkq_A 196 -----------------------------PDKPYMITASDDLTIKIWDYQTKSCVATLEG-HMSNVSFAVFHPTLPIIIS 245 (814)
T ss_dssp -----------------------------TTCCEEEEECTTSEEEEEETTTTEEEEEEEC-CSSCEEEEEECSSSSEEEE
T ss_pred -----------------------------CCCCEEEEEeCCCEEEEEECCCCcEEEEEcC-CCCCEEEEEEcCCCCEEEE
Confidence 2578999999999999999998876665543 3467899999999998885
Q ss_pred eeeeeec----CceeeeeeeeecCCCcceEEEEEeeecCCcc--EEEEeeCCCeEEEEecCCCcceecccc-cce-----
Q 018858 243 MEILDQS----GGKRLHLDYSVGGHTAAASCVAFSMFGERGK--YLISGGNDKLVKVWDCSRFQGVQTSIN-NDL----- 310 (349)
Q Consensus 243 ~~~~~~~----~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~--~l~s~~~d~~i~vwd~~~~~~~~~~~~-~~~----- 310 (349)
.+ .++. ..........+..|...+.+++|+ |++. +++++ .|+.+.+|++..........+ ...
T Consensus 246 ~~-~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 320 (814)
T 3mkq_A 246 GS-EDGTLKIWNSSTYKVEKTLNVGLERSWCIATH---PTGRKNYIASG-FDNGFTVLSLGNDEPTLSLDPVGKLVWSGG 320 (814)
T ss_dssp EE-TTSCEEEEETTTCSEEEEECCSSSSEEEEEEC---TTCGGGEEEEE-ETTEEEEEECSCCSCCEEECSSSEEEEECC
T ss_pred Ee-CCCeEEEEECCCCcEEEEeecCCCcEEEEEEc---cCCCceEEEEE-eCCCEEEEEcCCCCceeEECCCCCEEEECc
Confidence 33 2222 222345566777888899999999 7876 45554 467788998875432211000 000
Q ss_pred ----------------------------eeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 311 ----------------------------LIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 311 ----------------------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
......+...+.+++|+| +++++++++ |+.+.+|++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~-~~~~~i~~~ 384 (814)
T 3mkq_A 321 KNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSP-NGRFVTVVG-DGEYVIYTA 384 (814)
T ss_dssp TTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECT-TSSEEEEEE-TTEEEEEET
T ss_pred ccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECC-CCCEEEEec-CCEEEEEEC
Confidence 011133455678888987 787888777 888999885
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-35 Score=241.30 Aligned_cols=220 Identities=15% Similarity=0.134 Sum_probs=180.6
Q ss_pred CCeeeeCCceeeeEEEEecC-CCceEEEeCCCCcEEEEECCCC--cEEEEeecCCCCeEEEEEecC--CCEEEEEeCCCe
Q 018858 7 KPRRLRGHKATATCCIASRD-RPGFVASSGEDGCICWFDLRSK--DVQLVTDVGNGPVTSLCFKSG--NEDIIYVSSGKE 81 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~-~~~~l~t~~~dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~ 81 (349)
.+..|++|.+.|++++|+|+ ++++|++|+.|++|++||++++ +....+.+|...|.+++|+|+ +.+|++++.|+.
T Consensus 49 ~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~ 128 (316)
T 3bg1_A 49 LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGA 128 (316)
T ss_dssp EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSC
T ss_pred EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCC
Confidence 46788999999999999753 3789999999999999999876 356778889999999999997 789999999999
Q ss_pred EEEEEccCCCcccceeeccCcccceEEEEEccC-----------------CCEEEEEcCCCcEEEEEcCCc---eEecee
Q 018858 82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPK-----------------SSFLACADDGGDVKIIDIRQH---CLYKSL 141 (349)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----------------~~~l~~~~~dg~i~i~d~~~~---~~~~~~ 141 (349)
|++||++.+........+..|...+.+++|+|+ +++|++|+.|+.|++||++.. +.+..+
T Consensus 129 i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l 208 (316)
T 3bg1_A 129 ISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKL 208 (316)
T ss_dssp EEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECC
T ss_pred EEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeec
Confidence 999999865433334556678889999999997 468999999999999999754 466778
Q ss_pred ccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecC
Q 018858 142 RAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK 221 (349)
Q Consensus 142 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 221 (349)
. +|...|.+++|+|++.. ++.+|++++.||+|++|+++....
T Consensus 209 ~-~h~~~V~~v~~sp~~~~--------------------------------~~~~las~s~D~~v~iw~~~~~~~----- 250 (316)
T 3bg1_A 209 E-AHSDWVRDVAWAPSIGL--------------------------------PTSTIASCSQDGRVFIWTCDDASS----- 250 (316)
T ss_dssp B-CCSSCEEEEECCCCSSC--------------------------------SCCEEEEEETTCEEEEEECSSTTC-----
T ss_pred c-cCCCceEEEEecCCCCC--------------------------------CCceEEEEcCCCeEEEEEccCccc-----
Confidence 8 89999999999993100 137899999999999999875210
Q ss_pred CCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCC
Q 018858 222 STTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR 298 (349)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 298 (349)
.......+..|...|.+++|+ |++++|++++.|+.|++|+...
T Consensus 251 -------------------------------~~~~~~~~~~~~~~v~~v~~s---p~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 251 -------------------------------NTWSPKLLHKFNDVVWHVSWS---ITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp -------------------------------CCCBCCEEEECSSCEEEEEEC---TTTCCEEEEESSSCEEEEEECT
T ss_pred -------------------------------cchhhhhhhcCCCcEEEEEEc---CCCCEEEEEcCCCeEEEEEECC
Confidence 001112334578899999999 8999999999999999999764
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-34 Score=242.44 Aligned_cols=251 Identities=12% Similarity=0.061 Sum_probs=196.4
Q ss_pred CCCCeeeeC-----CceeeeEEEEecCC---CceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEec-CCCEEEE
Q 018858 5 EAKPRRLRG-----HKATATCCIASRDR---PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKS-GNEDIIY 75 (349)
Q Consensus 5 ~~~~~~l~~-----h~~~i~~~~~~~~~---~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~ 75 (349)
++.++.++. |...|++++|+|+. +.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+| ++++|++
T Consensus 54 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s 133 (366)
T 3k26_A 54 QGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLS 133 (366)
T ss_dssp GGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEE
T ss_pred CcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEE
Confidence 344555554 55789999999973 35899999999999999999999999999999999999999 9999999
Q ss_pred EeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccc-----------
Q 018858 76 VSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAG----------- 144 (349)
Q Consensus 76 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------- 144 (349)
++.||.|++||+++++....+..+..|...|.+++|+|++++|++++.||.|++||+++++....+. .
T Consensus 134 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~ 212 (366)
T 3k26_A 134 VSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK-ESYDYNPNKTNR 212 (366)
T ss_dssp EETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHH-HHHTCCGGGCSS
T ss_pred EeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccc-eeEEecCCCCcc
Confidence 9999999999999775444444346788999999999999999999999999999999877655444 2
Q ss_pred -----------------cccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEE
Q 018858 145 -----------------HSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVD 207 (349)
Q Consensus 145 -----------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 207 (349)
|...|.+++|+ +++|++++.||.|+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~--------------------------------------~~~l~~~~~d~~i~ 254 (366)
T 3k26_A 213 PFISQKIHFPDFSTRDIHRNYVDCVRWL--------------------------------------GDLILSKSCENAIV 254 (366)
T ss_dssp CCCCEEECCCSEEECSSCSSCCCEEEEE--------------------------------------TTEEEEECSSSEEE
T ss_pred cccceeeccCccccccCCcceEEEEEEc--------------------------------------CCEEEEEecCCEEE
Confidence 45555555554 36899999999999
Q ss_pred EEEccCceee-------------eecCCCCCCccceeeeecc--ccEEEEeeeeeecC----ceee----eeeeeecCC-
Q 018858 208 VINIESELNI-------------SRSKSTTKPLKGSQSTSKV--NIRDAEMEILDQSG----GKRL----HLDYSVGGH- 263 (349)
Q Consensus 208 i~d~~~~~~~-------------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~----~~~~----~~~~~~~~h- 263 (349)
+||+++.... ..........+..++|+|+ ++++++. ..++.+ .... .....+.+|
T Consensus 255 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 333 (366)
T 3k26_A 255 CWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALG-NQVGKLYVWDLEVEDPHKAKCTTLTHHK 333 (366)
T ss_dssp EEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEE-CTTSCEEEEECCSSSGGGCEEEEECCTT
T ss_pred EEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEE-ecCCcEEEEECCCCCCccccceEEcccc
Confidence 9999875431 1111223456888999999 9999853 222221 1111 133456666
Q ss_pred -CcceEEEEEeeecCCccEEEEeeCCCeEEEEecCC
Q 018858 264 -TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR 298 (349)
Q Consensus 264 -~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 298 (349)
...|++++|+ |++++|++++.||.|++||+.+
T Consensus 334 ~~~~v~~~~~s---~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 334 CGAAIRQTSFS---RDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp CCSCEEEEEEC---TTSSEEEEEETTSEEEEEEC--
T ss_pred cCCceEEEEeC---CCCCeEEEEeCCCEEEEEEecC
Confidence 7899999999 8999999999999999999863
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-34 Score=235.89 Aligned_cols=250 Identities=20% Similarity=0.232 Sum_probs=206.3
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 85 (349)
.+.+.+++|...|.+++|+|+ +++|++++.|+.|++|+............+...+..+.+++++++|++++.|+.+++|
T Consensus 77 ~~~~~l~~h~~~V~~~~~s~d-g~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~ 155 (340)
T 4aow_A 77 IPQRALRGHSHFVSDVVISSD-GQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLW 155 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred eeeEEEeCCCCCEEEEEECCC-CCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEE
Confidence 356788999999999999998 8999999999999999999998888888888999999999999999999999999999
Q ss_pred EccCCCcccceeeccCcccceEEEEEccCC--CEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCC
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPKS--SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
|+.... ........|...+..++|++++ .++++++.|+.|++||+++++.+..+. +|...|.+++|+|
T Consensus 156 d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~-~h~~~v~~~~~s~------- 225 (340)
T 4aow_A 156 NTLGVC--KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI-GHTGYLNTVTVSP------- 225 (340)
T ss_dssp CTTSCE--EEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECT-------
T ss_pred EeCCCc--eEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEec-CCCCcEEEEEECC-------
Confidence 987532 3334456678899999998865 578899999999999999999999998 8999999999999
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
++++|++|+.||.|++||+++.+........ ..+..+.++|++.+++..
T Consensus 226 -----------------------------~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~ 274 (340)
T 4aow_A 226 -----------------------------DGSLCASGGKDGQAMLWDLNEGKHLYTLDGG--DIINALCFSPNRYWLCAA 274 (340)
T ss_dssp -----------------------------TSSEEEEEETTCEEEEEETTTTEEEEEEECS--SCEEEEEECSSSSEEEEE
T ss_pred -----------------------------CCCEEEEEeCCCeEEEEEeccCceeeeecCC--ceEEeeecCCCCceeecc
Confidence 7999999999999999999988777655443 568899999999887753
Q ss_pred ee-----eeecCceee------eeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCc
Q 018858 244 EI-----LDQSGGKRL------HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ 300 (349)
Q Consensus 244 ~~-----~~~~~~~~~------~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 300 (349)
.. ++....... .......+|...|++++|+ |++++|++|+.||.|+|||+++++
T Consensus 275 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s---~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 275 TGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWS---ADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp ETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEEC---TTSSEEEEEETTSCEEEEEEEC--
T ss_pred CCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEEC---CCCCEEEEEeCCCEEEEEeCCCcC
Confidence 21 111111110 1112345688899999999 899999999999999999999873
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-34 Score=247.24 Aligned_cols=249 Identities=19% Similarity=0.200 Sum_probs=196.9
Q ss_pred ceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc---EEEEeec-----------------------------------
Q 018858 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKD---VQLVTDV----------------------------------- 56 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~---~~~~~~~----------------------------------- 56 (349)
..++.+++|+|+ +++|+++ .++.|++||+.+++ .+..+..
T Consensus 4 ~~p~~~v~~s~d-g~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T 2vdu_B 4 IHPLQNLLTSRD-GSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG 81 (450)
T ss_dssp ECCCCEEEECSS-SSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred cccEEEEEecCC-CCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence 358899999999 7766665 47899999999988 5555543
Q ss_pred -------------------CCCCeEEEEEecCCCEE-EEEeCCCeEEEEEcc--CCCcccceeeccCcccceEEEEEccC
Q 018858 57 -------------------GNGPVTSLCFKSGNEDI-IYVSSGKEVKSFDVH--MPASWRPLESYNYNKEEINQIVCNPK 114 (349)
Q Consensus 57 -------------------~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~v~~~~~~~~ 114 (349)
|...|.+++|+|++++| ++++.||.|++||+. +++....+.. ..+...|.+++|+|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~ 160 (450)
T 2vdu_B 82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKR-FCFSKRPNAISIAED 160 (450)
T ss_dssp ------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEE-EECSSCEEEEEECTT
T ss_pred ccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeec-ccCCCCceEEEEcCC
Confidence 23369999999999996 889999999999998 6654444432 134578999999999
Q ss_pred CCEEEEEcCCCcEEEEEcCCceEec----eeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCccccc
Q 018858 115 SSFLACADDGGDVKIIDIRQHCLYK----SLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADML 190 (349)
Q Consensus 115 ~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (349)
+++|++++.+|.|++|++.+++... .+. +|...|.+++|+|
T Consensus 161 ~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~sp---------------------------------- 205 (450)
T 2vdu_B 161 DTTVIIADKFGDVYSIDINSIPEEKFTQEPIL-GHVSMLTDVHLIK---------------------------------- 205 (450)
T ss_dssp SSEEEEEETTSEEEEEETTSCCCSSCCCCCSE-ECSSCEEEEEEEE----------------------------------
T ss_pred CCEEEEEeCCCcEEEEecCCcccccccceeee-cccCceEEEEEcC----------------------------------
Confidence 9999999999999999998876554 666 7889999999999
Q ss_pred CCC---CcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeee-ecCCCcc
Q 018858 191 DKT---NKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYS-VGGHTAA 266 (349)
Q Consensus 191 ~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~ 266 (349)
+ +++|++++.|+.|++||++++ ..+.. +.+|...
T Consensus 206 --~~~~~~~l~s~~~d~~i~vwd~~~~----------------------------------------~~~~~~~~~h~~~ 243 (450)
T 2vdu_B 206 --DSDGHQFIITSDRDEHIKISHYPQC----------------------------------------FIVDKWLFGHKHF 243 (450)
T ss_dssp --CTTSCEEEEEEETTSCEEEEEESCT----------------------------------------TCEEEECCCCSSC
T ss_pred --CCCCCcEEEEEcCCCcEEEEECCCC----------------------------------------ceeeeeecCCCCc
Confidence 7 889999999999999999864 22333 5579999
Q ss_pred eEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceee----------------eccccccceEEEEeecCC
Q 018858 267 ASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLI----------------KNINLNKKVNWLCTTPTE 330 (349)
Q Consensus 267 i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~----------------~~~~~~~~v~~~~~~~~~ 330 (349)
|++++|+ ++++|++++.|+.|++||+.+++............ ........|..++|+| +
T Consensus 244 v~~~~~s----d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~ 318 (450)
T 2vdu_B 244 VSSICCG----KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK-N 318 (450)
T ss_dssp EEEEEEC----STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS-S
T ss_pred eEEEEEC----CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC-C
Confidence 9999996 78999999999999999999985432211000000 0002345689999988 8
Q ss_pred CCcEEEee-CCCeEEEeeC
Q 018858 331 SENLVVCD-TSKVVKVYSI 348 (349)
Q Consensus 331 ~~~l~~~~-~dg~i~iw~~ 348 (349)
+++|++++ .|+.|++|++
T Consensus 319 ~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 319 LPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp SSEEEEEETTCSEEEEEEE
T ss_pred CCEEEEEECCCCeEEEEEe
Confidence 88999998 8999999997
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-35 Score=250.14 Aligned_cols=290 Identities=11% Similarity=0.119 Sum_probs=213.1
Q ss_pred EecCCCceEEEeCCCCcEEEEECCCCcEEEEe-ecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEEccC---CCccccee
Q 018858 23 ASRDRPGFVASSGEDGCICWFDLRSKDVQLVT-DVGNGPVTSLCFKS-GNEDIIYVSSGKEVKSFDVHM---PASWRPLE 97 (349)
Q Consensus 23 ~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~ 97 (349)
|+|+ +..+++++ .|+ .+++.+..+ .+|...|.+++|+| ++++|++|+.||.|++||+.+ +.......
T Consensus 35 f~~~-~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 106 (437)
T 3gre_A 35 FGPI-QEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL 106 (437)
T ss_dssp GCCC-CCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSE
T ss_pred cCCc-cccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceee
Confidence 4555 55555544 488 457788888 88999999999999 999999999999999999976 33222222
Q ss_pred eccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcC---CceEeceeccccccceeEEEEccCCCCCCCCCCCCCCcccc
Q 018858 98 SYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIR---QHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCY 174 (349)
Q Consensus 98 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (349)
.+ .|...|.+++|+|++++|++++.||.|++||++ +++....+. .+ .+..+.|+|++
T Consensus 107 ~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~-~~--~i~~~~~~~~~---------------- 166 (437)
T 3gre_A 107 TY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLN-CE--CIRKINLKNFG---------------- 166 (437)
T ss_dssp EE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEE-EE--EEEEEEGGGGS----------------
T ss_pred ec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccc-cc--eeEEEEccCcc----------------
Confidence 32 378899999999999999999999999999995 555555554 33 56677766521
Q ss_pred CCceeEEee--cCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCC-CCCccceeeeeccccEEEEeeeeeec--
Q 018858 175 NPAFVHAIA--IPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKST-TKPLKGSQSTSKVNIRDAEMEILDQS-- 249 (349)
Q Consensus 175 ~~~~~~~~~--~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-- 249 (349)
....+.++. +.+ ++.+|++++.||.|++||+++++........ ....+.+++|+|+++++++ +..++.
T Consensus 167 ~~~~~~~~~~~~~~------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s-~~~dg~i~ 239 (437)
T 3gre_A 167 KNEYAVRMRAFVNE------EKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLIL-GTTRGIID 239 (437)
T ss_dssp SCCCEEEEEEEECS------SCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEE-EETTSCEE
T ss_pred cccCceEEEEEEcC------CCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEE-EcCCCeEE
Confidence 122233333 223 7899999999999999999998877766654 5678999999999999985 333322
Q ss_pred --Cceeeeeeeeec-CCCcceEEEEEee-ecCCccEEEEeeCCCeEEEEecCCCcceeccccc--ce---ee--------
Q 018858 250 --GGKRLHLDYSVG-GHTAAASCVAFSM-FGERGKYLISGGNDKLVKVWDCSRFQGVQTSINN--DL---LI-------- 312 (349)
Q Consensus 250 --~~~~~~~~~~~~-~h~~~i~~i~~~~-~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~--~~---~~-------- 312 (349)
......++..+. .|...|+++.++| +++++.+|++++.|+.|++||+++++........ .+ ..
T Consensus 240 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 319 (437)
T 3gre_A 240 IWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLE 319 (437)
T ss_dssp EEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGG
T ss_pred EEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccc
Confidence 122334555554 6778999997774 3467889999999999999999987543221100 00 00
Q ss_pred --eccc--cccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 313 --KNIN--LNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 313 --~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.+.+ |...|++++|+ ++++|++++.||.|++||+.
T Consensus 320 ~~~~~~~~~~~~v~~l~~~--~~~~l~s~~~d~~i~~wd~~ 358 (437)
T 3gre_A 320 ELNFCGIRSLNALSTISVS--NDKILLTDEATSSIVMFSLN 358 (437)
T ss_dssp GCCCCCCCSGGGGCCEEEE--TTEEEEEEGGGTEEEEEETT
T ss_pred cceecccccCCceEEEEEC--CceEEEecCCCCeEEEEECC
Confidence 1122 78889999997 55799999999999999974
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-35 Score=243.83 Aligned_cols=233 Identities=15% Similarity=0.137 Sum_probs=181.6
Q ss_pred EecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCC------cccce
Q 018858 23 ASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA------SWRPL 96 (349)
Q Consensus 23 ~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~ 96 (349)
+.++ +.+|++|+.||.|++||+.+++.+..+. ...|.++.++|+ +++++.|+.|++|+..... ....+
T Consensus 44 ~~~d-~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~ 117 (343)
T 3lrv_A 44 MYYD-KWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL 117 (343)
T ss_dssp SSEE-EEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred hcCC-CCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence 3445 7899999999999999999998887776 456778888887 9999999999999776311 11212
Q ss_pred eec-cCcccceEEEEEcc--CCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccc
Q 018858 97 ESY-NYNKEEINQIVCNP--KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQC 173 (349)
Q Consensus 97 ~~~-~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 173 (349)
..+ ..|...|.+++|+| +++++++++.||.|++||+++++........+...+.+++|+|
T Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p----------------- 180 (343)
T 3lrv_A 118 REIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK----------------- 180 (343)
T ss_dssp EEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT-----------------
T ss_pred EEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC-----------------
Confidence 222 24557899999999 9999999999999999999999887666424566799999999
Q ss_pred cCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCcee
Q 018858 174 YNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKR 253 (349)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (349)
++.+|++|+.||.|++||++++
T Consensus 181 -------------------dg~~lasg~~dg~i~iwd~~~~--------------------------------------- 202 (343)
T 3lrv_A 181 -------------------DSLLLALYSPDGILDVYNLSSP--------------------------------------- 202 (343)
T ss_dssp -------------------TSCEEEEECTTSCEEEEESSCT---------------------------------------
T ss_pred -------------------CCCEEEEEcCCCEEEEEECCCC---------------------------------------
Confidence 8999999999999999999975
Q ss_pred eeee-eeecC-CCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceE--EEEeecC
Q 018858 254 LHLD-YSVGG-HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVN--WLCTTPT 329 (349)
Q Consensus 254 ~~~~-~~~~~-h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~ 329 (349)
... ..+.. |...|++++|+ |++.+|++++ |+.|++||+++.+... .+..+..|...+. +++|+|
T Consensus 203 -~~~~~~~~~~h~~~v~~l~fs---~~g~~l~s~~-~~~v~iwd~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~- 270 (343)
T 3lrv_A 203 -DQASSRFPVDEEAKIKEVKFA---DNGYWMVVEC-DQTVVCFDLRKDVGTL------AYPTYTIPEFKTGTVTYDIDD- 270 (343)
T ss_dssp -TSCCEECCCCTTSCEEEEEEC---TTSSEEEEEE-SSBEEEEETTSSTTCB------SSCCCBC-----CCEEEEECT-
T ss_pred -CCCccEEeccCCCCEEEEEEe---CCCCEEEEEe-CCeEEEEEcCCCCcce------eecccccccccccceEEEECC-
Confidence 222 45566 99999999999 8999999999 5599999999874321 1111222334444 699988
Q ss_pred CCCcEEEeeC-CCeEEEeeC
Q 018858 330 ESENLVVCDT-SKVVKVYSI 348 (349)
Q Consensus 330 ~~~~l~~~~~-dg~i~iw~~ 348 (349)
++++|++++. |+.|++|++
T Consensus 271 ~g~~l~~~s~~d~~i~v~~~ 290 (343)
T 3lrv_A 271 SGKNMIAYSNESNSLTIYKF 290 (343)
T ss_dssp TSSEEEEEETTTTEEEEEEE
T ss_pred CCCEEEEecCCCCcEEEEEE
Confidence 8889999988 999999986
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-34 Score=241.89 Aligned_cols=251 Identities=13% Similarity=0.080 Sum_probs=207.3
Q ss_pred CCeeeeCCceeeeEEEEecC---CC---ceEEEeCCCCcEEEEECCCCcE-----EEEeecC-----CCCeEEEEEe---
Q 018858 7 KPRRLRGHKATATCCIASRD---RP---GFVASSGEDGCICWFDLRSKDV-----QLVTDVG-----NGPVTSLCFK--- 67 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~---~~---~~l~t~~~dg~i~vwd~~~~~~-----~~~~~~~-----~~~v~~~~~~--- 67 (349)
.+..+.+|...|++++|+|+ ++ ++|++++.||.|++||+.+++. ...+..| ...|.+++|+
T Consensus 54 ~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 133 (397)
T 1sq9_A 54 KSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN 133 (397)
T ss_dssp GEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC
T ss_pred cceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeecc
Confidence 68889999999999999996 36 7999999999999999998876 7888888 5899999999
Q ss_pred -cCCCE-EEEEeCCCeEEEEEccC------CCccc--ceeec-------cCcccceEEEEEccCCCEEEEEcCCCcEEEE
Q 018858 68 -SGNED-IIYVSSGKEVKSFDVHM------PASWR--PLESY-------NYNKEEINQIVCNPKSSFLACADDGGDVKII 130 (349)
Q Consensus 68 -~~~~~-l~~~~~dg~i~iwd~~~------~~~~~--~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 130 (349)
|++++ |++++.||.|++||+++ ++... ....+ ..|...+.+++|+|++ +|++++.||.|++|
T Consensus 134 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~ 212 (397)
T 1sq9_A 134 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQIS 212 (397)
T ss_dssp ----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEE
T ss_pred CCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEE
Confidence 99999 99999999999999987 44333 00023 3467889999999999 99999999999999
Q ss_pred EcCCceEeceeccc---c---ccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCC-
Q 018858 131 DIRQHCLYKSLRAG---H---SSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD- 203 (349)
Q Consensus 131 d~~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d- 203 (349)
|+++++.+..+. . | ...+.+++|+| ++++|++++.|
T Consensus 213 d~~~~~~~~~~~-~~~~h~~~~~~i~~i~~~~------------------------------------~~~~l~~~~~d~ 255 (397)
T 1sq9_A 213 ELSTLRPLYNFE-SQHSMINNSNSIRSVKFSP------------------------------------QGSLLAIAHDSN 255 (397)
T ss_dssp ETTTTEEEEEEE-CCC---CCCCCEEEEEECS------------------------------------STTEEEEEEEET
T ss_pred ECCCCceeEEEe-ccccccccCCccceEEECC------------------------------------CCCEEEEEecCC
Confidence 999999998888 7 7 88999999999 78999999999
Q ss_pred --CeEEEEEccCceeeeecCCC------------CCCccceeeeeccccEEEEeeeeee----cCceeeeeeeeec----
Q 018858 204 --GVVDVINIESELNISRSKST------------TKPLKGSQSTSKVNIRDAEMEILDQ----SGGKRLHLDYSVG---- 261 (349)
Q Consensus 204 --g~i~i~d~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~---- 261 (349)
|.|++||+++++.......+ ....+..++|+|+++++++.+ .++ +.....+.+..+.
T Consensus 256 ~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~ 334 (397)
T 1sq9_A 256 SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG-WDGKLRFWDVKTKERITTLNMHCD 334 (397)
T ss_dssp TEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE-TTSEEEEEETTTTEEEEEEECCGG
T ss_pred CCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEe-CCCeEEEEEcCCCceeEEEecccC
Confidence 99999999988776665542 567889999999999998633 222 1222334555666
Q ss_pred --CC---------------CcceEEEEEeeecCCc----------cEEEEeeCCCeEEEEecCCC
Q 018858 262 --GH---------------TAAASCVAFSMFGERG----------KYLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 262 --~h---------------~~~i~~i~~~~~~~~~----------~~l~s~~~d~~i~vwd~~~~ 299 (349)
+| ...|++++|+ |++ ++|++++.||.|++|+++++
T Consensus 335 ~~~~~~~~~~g~~~~~~~~~~~v~~~~~~---~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 335 DIEIEEDILAVDEHGDSLAEPGVFDVKFL---KKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp GCSSGGGCCCBCTTSCBCSSCCEEEEEEE---CTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred cccchhhhhccccccccccCCceeEEEec---cccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 66 8999999999 887 79999999999999999875
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=236.52 Aligned_cols=255 Identities=9% Similarity=0.054 Sum_probs=182.1
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEE-EEeCCCeE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDII-YVSSGKEV 82 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i 82 (349)
+.+.++.++.|.+.|++++|+|+ +++|++|+.++ +++||.++++.......+ .+..+++.++++.++ +++.|+.|
T Consensus 8 ~~~~~~~~~~h~~~V~~v~fs~d-g~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~v 83 (355)
T 3vu4_A 8 TRNPIVPENHVSNPVTDYEFNQD-QSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYVAFVTGVKEVV 83 (355)
T ss_dssp -----------CCCCCEEEECTT-SSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTSSEEEEECSSTTEE
T ss_pred ccCCccccccCCCceEEEEECCC-CCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCCCEEEEEECCccEE
Confidence 34566778899999999999998 89999998775 789999877765544432 577788888888874 56778999
Q ss_pred EEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCc-eEeceeccccccceeEEEEccCCCCC
Q 018858 83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQH-CLYKSLRAGHSSICSSVQFIPWKPWE 161 (349)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~ 161 (349)
++||+.+++... .+. +...|.+++++++. ++++ .++.|++||+.++ +.+..+. . +...+++++
T Consensus 84 ~iWd~~~~~~~~---~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~-~---~~~~~~~s~----- 147 (355)
T 3vu4_A 84 HIWDDVKKQDVS---RIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDI-R---FGGVCEFSN----- 147 (355)
T ss_dssp EEEETTTTEEEE---EEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCE-E---EEEEEEEET-----
T ss_pred EEEECCCCcEEE---EEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEec-c---CCceEEEEc-----
Confidence 999999875443 333 35689999998763 4443 3678999999988 7776666 3 333444544
Q ss_pred CCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEE--EcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccE
Q 018858 162 GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV--AKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIR 239 (349)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (349)
.++++ |+.||.|++||++++......... ++
T Consensus 148 ---------------------------------~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~-----------~~--- 180 (355)
T 3vu4_A 148 ---------------------------------GLLVYSNEFNLGQIHITKLQSSGSATTQDQG-----------VQ--- 180 (355)
T ss_dssp ---------------------------------TEEEEEESSCTTCEEEEECCC--------------------------
T ss_pred ---------------------------------cEEEEeCCCcCcEEEEEECCCCCcccccccc-----------cc---
Confidence 34555 689999999999874311100000 00
Q ss_pred EEEeeeeeecCceeeee-eeeecCCCcceEEEEEeeecCCccEEEEeeCCCe-EEEEecCCCcceecccccceeeecc-c
Q 018858 240 DAEMEILDQSGGKRLHL-DYSVGGHTAAASCVAFSMFGERGKYLISGGNDKL-VKVWDCSRFQGVQTSINNDLLIKNI-N 316 (349)
Q Consensus 240 ~~~~~~~~~~~~~~~~~-~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~-i~vwd~~~~~~~~~~~~~~~~~~~~-~ 316 (349)
.....+ ...+.+|...|++++|+ |++++|++|+.|++ |++||++++ ..+..+. +
T Consensus 181 -----------~~~~~p~~~~~~~h~~~v~~~~~s---~~g~~l~s~s~d~~~v~iwd~~~~---------~~~~~~~~g 237 (355)
T 3vu4_A 181 -----------QKAILGKGVLIKAHTNPIKMVRLN---RKSDMVATCSQDGTIIRVFKTEDG---------VLVREFRRG 237 (355)
T ss_dssp -----------------CCEEECCCSSCEEEEEEC---TTSSEEEEEETTCSEEEEEETTTC---------CEEEEEECT
T ss_pred -----------ccccCcccEEEEccCCceEEEEEC---CCCCEEEEEeCCCCEEEEEECCCC---------cEEEEEEcC
Confidence 001122 56788999999999999 89999999999998 999999987 5555565 5
Q ss_pred -cccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 317 -LNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 317 -~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
|...|++++|+| ++++|++++.|+.|++||++
T Consensus 238 ~h~~~v~~~~~s~-~~~~l~s~s~d~~v~iw~~~ 270 (355)
T 3vu4_A 238 LDRADVVDMKWST-DGSKLAVVSDKWTLHVFEIF 270 (355)
T ss_dssp TCCSCEEEEEECT-TSCEEEEEETTCEEEEEESS
T ss_pred CCCCcEEEEEECC-CCCEEEEEECCCEEEEEEcc
Confidence 999999999988 88899999999999999974
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-33 Score=237.68 Aligned_cols=281 Identities=15% Similarity=0.081 Sum_probs=186.5
Q ss_pred CCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecC---CCEEEEEeCCCeEEEEEccC
Q 018858 13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSG---NEDIIYVSSGKEVKSFDVHM 89 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~~~ 89 (349)
+|...|.+++|+|+++.+|++++.||.|++||+.+++....+. +...+.++.++|. +.++++++.++.|++||+++
T Consensus 97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 175 (408)
T 4a11_B 97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS 175 (408)
T ss_dssp CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS
T ss_pred cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC
Confidence 6999999999999658899999999999999999998887777 7788999999884 44999999999999999987
Q ss_pred CCcccceeeccCcccceEEEEEccCCC-EEEEEcCCCcEEEEEcCCce-Eecee---------------ccccccceeEE
Q 018858 90 PASWRPLESYNYNKEEINQIVCNPKSS-FLACADDGGDVKIIDIRQHC-LYKSL---------------RAGHSSICSSV 152 (349)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-~~~~~---------------~~~~~~~v~~~ 152 (349)
++ .+..+..|...|.+++|+|+++ .|++++.||.|++||++++. .+..+ . .|...|.++
T Consensus 176 ~~---~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~ 251 (408)
T 4a11_B 176 GS---CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANT-AHNGKVNGL 251 (408)
T ss_dssp SC---CCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSC-SCSSCEEEE
T ss_pred cc---eeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccc-cccCceeEE
Confidence 64 3455666889999999999998 58899999999999998654 22222 3 567778888
Q ss_pred EEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCC----CCcc
Q 018858 153 QFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTT----KPLK 228 (349)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~~ 228 (349)
+|+| ++++|++++.||.|++||+++++......... ....
T Consensus 252 ~~~~------------------------------------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 295 (408)
T 4a11_B 252 CFTS------------------------------------DGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGL 295 (408)
T ss_dssp EECT------------------------------------TSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCC
T ss_pred EEcC------------------------------------CCCEEEEecCCCeEEEEECCCCccceeccccccccccccc
Confidence 8888 89999999999999999999876544322211 1111
Q ss_pred -ceeeeeccccEEEEeee--eeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecc
Q 018858 229 -GSQSTSKVNIRDAEMEI--LDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTS 305 (349)
Q Consensus 229 -~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 305 (349)
...........++.... ...........+..+.+|...|++++|+ |++++|++++.||.|++||+.+.+.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s---~~~~~l~s~~~dg~i~iw~~~~~~~---- 368 (408)
T 4a11_B 296 KFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQ---SNFQELYSGSRDCNILAWVPSLYEP---- 368 (408)
T ss_dssp CCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEE---TTTTEEEEEETTSCEEEEEECC-------
T ss_pred eeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEc---CCCCEEEEECCCCeEEEEeCCCCCc----
Confidence 11122222333332111 1111122345667788999999999999 8999999999999999999999742
Q ss_pred cccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 306 INNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 306 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
+.....+. ....+.+.....+.+++.|+.+++|+.+
T Consensus 369 -----~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 369 -----VPDDDETT---TKSQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp --------------------------------------------
T ss_pred -----cCCCCceE---eccccccccceeecccCccCceeecCCc
Confidence 22221111 1123344444466777889999999863
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-35 Score=254.56 Aligned_cols=247 Identities=11% Similarity=0.045 Sum_probs=188.0
Q ss_pred CCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc-EEEEeecCCCCeEEE--EEecCC-CEEEEEeCCCeE
Q 018858 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD-VQLVTDVGNGPVTSL--CFKSGN-EDIIYVSSGKEV 82 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~dg~i 82 (349)
....+.+|...|++++|+++ ..|++|+.||+|++||+++++ +...+.+|...|.++ +|+|++ .+|++++.|++|
T Consensus 258 p~~~l~~h~~~v~sv~~s~~--~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tv 335 (524)
T 2j04_B 258 PSLTLSLADSLITTFDFLSP--TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYF 335 (524)
T ss_dssp CSEEECCTTTCEEEEEESSS--SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEE
T ss_pred ceEEEEcCCCCEEEEEecCC--CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeE
Confidence 34578899999999999985 489999999999999998764 456688999999999 578887 899999999999
Q ss_pred EEEEccCCCcccceeeccCcc--cceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCC
Q 018858 83 KSFDVHMPASWRPLESYNYNK--EEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPW 160 (349)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 160 (349)
++||+++++.... +.+|. ..+.+++|+|+++.+++++.|+.|++||++++.++..+. +|.+.|++++|+|
T Consensus 336 klWD~~~~~~~~~---~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~-gH~~~V~sva~Sp---- 407 (524)
T 2j04_B 336 YIFNPKDIATTKT---TVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLV-SRETTITAIGVSR---- 407 (524)
T ss_dssp EEECGGGHHHHCE---EEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEE-ECSSCEEEEECCS----
T ss_pred EEEECCCCCcccc---cccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeee-cCCCceEEEEeCC----
Confidence 9999986543322 22332 247899999999999999999999999999988878888 8999999999999
Q ss_pred CCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCC----CCCCccceeeeecc
Q 018858 161 EGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS----TTKPLKGSQSTSKV 236 (349)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~~~~~~~~~~~ 236 (349)
++++|++|+.||+|++||+... ....... .....+..++|+|+
T Consensus 408 --------------------------------~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~ 454 (524)
T 2j04_B 408 --------------------------------LHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIK 454 (524)
T ss_dssp --------------------------------SCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSS
T ss_pred --------------------------------CCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCC
Confidence 7899999999999999998653 1111110 11123568899999
Q ss_pred ccEEEEeeeeeecCc-eeeeeeeeecCCCcceEEEEEeeecCCc---cEEEEeeCCCeEEEEecCCC
Q 018858 237 NIRDAEMEILDQSGG-KRLHLDYSVGGHTAAASCVAFSMFGERG---KYLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 237 ~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~i~~i~~~~~~~~~---~~l~s~~~d~~i~vwd~~~~ 299 (349)
+..+........... ........+.+|...|++++|+ |++ .++++|+.||.|+||++...
T Consensus 455 g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafs---p~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 455 DDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWN---ETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp SCEEEECCCCCCCC-------------CCCSCCCEEEC---CSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred CCeEEccCCceecccccCCcceeeecCCCceEEEEECC---CCCCccHHHHhhccCceEEEEEcccc
Confidence 986643221111111 1244567788999999999999 674 59999999999999998763
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-34 Score=244.48 Aligned_cols=281 Identities=9% Similarity=0.026 Sum_probs=172.7
Q ss_pred CceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEE-----EEeecCCCCeEEEEEec--------CCCEEEEEeCCC
Q 018858 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQ-----LVTDVGNGPVTSLCFKS--------GNEDIIYVSSGK 80 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~-----~~~~~~~~~v~~~~~~~--------~~~~l~~~~~dg 80 (349)
|...+....+.++ +.+|++++.|++|++||.++++.. ..+.+|...|.+++|+| ++++|++++.|+
T Consensus 88 ~~~~~~~~~~~~~-~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~ 166 (393)
T 4gq1_A 88 HDGDGNVNSSPVY-SLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC 166 (393)
T ss_dssp ---------CCEE-EEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS
T ss_pred cCCCcceeecCCC-CCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC
Confidence 3333333344444 678999999999999999887653 34578999999999998 789999999999
Q ss_pred eEEEEEccCCCcccceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCceEeceeccccccc----eeEEEEc
Q 018858 81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSI----CSSVQFI 155 (349)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~----v~~~~~~ 155 (349)
+|+|||++++. .+.....|...+.+++|+|++ .+|++++.|+.|++||+++++...... .+... +....+.
T Consensus 167 tv~~Wd~~~~~---~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~-~~~~~~~~~~~s~~~~ 242 (393)
T 4gq1_A 167 TLIIWRLTDEG---PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENS-QTELVKNPWLLTLNTL 242 (393)
T ss_dssp EEEEEEEETTE---EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-----------CSCCCSEEEESG
T ss_pred eEEEEECCCCc---eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCccccccc-ccCCcccceEEecccc
Confidence 99999998653 233344467899999999987 589999999999999999876654433 22111 1111111
Q ss_pred cCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeec
Q 018858 156 PWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSK 235 (349)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (349)
+... .....-....+.++.+. .++++.+++++.|+.+++||+...+....+... ...+..+.+.|
T Consensus 243 ~~~~---------~~~~~~~~~~v~~v~~~-----~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~-~~~~~~~~~~~ 307 (393)
T 4gq1_A 243 PLVN---------TCHSSGIASSLANVRWI-----GSDGSGILAMCKSGAWLRWNLFANNDYNEISDS-TMKLGPKNLLP 307 (393)
T ss_dssp GGC---------------CCSSSCSEEEEE-----TTTTCEEEEECTTSEEEEEEC--------------------CCSC
T ss_pred ccee---------eeecccccccceeeeee-----cCCCCEEEEEeCCCCEEEEECccCCCCceEeee-cCccccEEEcc
Confidence 1000 00000111223344433 128999999999999999999875433322211 12222333333
Q ss_pred cccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecc
Q 018858 236 VNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI 315 (349)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 315 (349)
+.+. ...+...+. ..++|. .++.++++|+.||.|++||+.++ .......
T Consensus 308 ~~~~--------------------~~~~~~~~~-~~~~~~-~~~~~~~sgs~Dg~V~lwd~~~~---------~~~~~~~ 356 (393)
T 4gq1_A 308 NVQG--------------------ISLFPSLLG-ACPHPR-YMDYFATAHSQHGLIQLINTYEK---------DSNSIPI 356 (393)
T ss_dssp SEEE--------------------ECSSCCSSC-CEECSS-CTTEEEEEETTTTEEEEEETTCT---------TCCEEEE
T ss_pred cccc--------------------ccccCccee-EEEccC-CCCEEEEEECCCCEEEEEECCCC---------cEEEEec
Confidence 3321 122222333 334421 35567788899999999999987 4555667
Q ss_pred ccccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 316 NLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 316 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
.|...|.+++|+| +|++|++++.|| +.+|+
T Consensus 357 ~~~~~V~svafsp-dG~~LA~as~~G-v~lvr 386 (393)
T 4gq1_A 357 QLGMPIVDFCWHQ-DGSHLAIATEGS-VLLTR 386 (393)
T ss_dssp ECSSCEEEEEECT-TSSEEEEEESSE-EEEEE
T ss_pred CCCCcEEEEEEcC-CCCEEEEEeCCC-eEEEE
Confidence 7889999999998 899999998776 44554
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=236.33 Aligned_cols=203 Identities=13% Similarity=0.129 Sum_probs=168.4
Q ss_pred CceeeeEEEEecCCCceEE--EeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 018858 14 HKATATCCIASRDRPGFVA--SSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA 91 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~--t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 91 (349)
+...+.+++|+|+ +++++ +++.|++|+|||+++++.+..+. |...|.+++|+|+|+++++++.+ .+.+|+..+++
T Consensus 132 ~~~~~~~v~fSpD-g~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~ 208 (365)
T 4h5i_A 132 ADDYTKLVYISRE-GTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGS 208 (365)
T ss_dssp TTCCEEEEEECTT-SSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCC
T ss_pred cccCEEEEEEcCC-CCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCc
Confidence 4456889999999 78765 55679999999999999988886 77889999999999999999854 57777776654
Q ss_pred cccceeeccCcccceEEEEEccCCCEEEEEcCCC----cEEEEEcCCceE----eceeccccccceeEEEEccCCCCCCC
Q 018858 92 SWRPLESYNYNKEEINQIVCNPKSSFLACADDGG----DVKIIDIRQHCL----YKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 92 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
.. .......|...+.+++|+|+++++++++.++ .+++|++..... ...+. +|...|++++|+|
T Consensus 209 ~~-~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~V~~~~~Sp------- 279 (365)
T 4h5i_A 209 CI-ARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVT-NRFKGITSMDVDM------- 279 (365)
T ss_dssp EE-EEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEE-SSCSCEEEEEECT-------
T ss_pred ce-eeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeec-CCCCCeEeEEECC-------
Confidence 32 2233445778899999999999999998877 588899876543 33455 7888999999999
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
++++||+|+.|+.|+|||++++
T Consensus 280 -----------------------------dg~~lasgs~D~~V~iwd~~~~----------------------------- 301 (365)
T 4h5i_A 280 -----------------------------KGELAVLASNDNSIALVKLKDL----------------------------- 301 (365)
T ss_dssp -----------------------------TSCEEEEEETTSCEEEEETTTT-----------------------------
T ss_pred -----------------------------CCCceEEEcCCCEEEEEECCCC-----------------------------
Confidence 8999999999999999999975
Q ss_pred eeeeecCceeeeeeee-ecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCc
Q 018858 244 EILDQSGGKRLHLDYS-VGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ 300 (349)
Q Consensus 244 ~~~~~~~~~~~~~~~~-~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 300 (349)
+++.. +.+|...|++++|+ |||++|++||.|++|+|||++...
T Consensus 302 -----------~~~~~~~~gH~~~V~~v~fS---pdg~~laS~S~D~tvrvw~ip~~~ 345 (365)
T 4h5i_A 302 -----------SMSKIFKQAHSFAITEVTIS---PDSTYVASVSAANTIHIIKLPLNY 345 (365)
T ss_dssp -----------EEEEEETTSSSSCEEEEEEC---TTSCEEEEEETTSEEEEEECCTTT
T ss_pred -----------cEEEEecCcccCCEEEEEEC---CCCCEEEEEeCCCeEEEEEcCCCC
Confidence 44444 57899999999999 999999999999999999997653
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-33 Score=239.61 Aligned_cols=272 Identities=14% Similarity=0.065 Sum_probs=201.4
Q ss_pred eeCCceeeeEEEEecCCCceE-EEeCCCCcEEEEECC--CCcEEEEee--cCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 018858 11 LRGHKATATCCIASRDRPGFV-ASSGEDGCICWFDLR--SKDVQLVTD--VGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 11 l~~h~~~i~~~~~~~~~~~~l-~t~~~dg~i~vwd~~--~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 85 (349)
..+|.+.|++++|+|+ +++| ++++.||.|++||+. +++.+..+. .|...|.+++|+|++++|++++.+|.|++|
T Consensus 98 ~~~~~~~v~~~~~s~d-~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~ 176 (450)
T 2vdu_B 98 APPIYSYIRNLRLTSD-ESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSI 176 (450)
T ss_dssp --CCCCCEEEEEECTT-SSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred CCccCCceEEEEEcCC-CCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEE
Confidence 3467788999999999 7775 899999999999999 888877776 577899999999999999999999999999
Q ss_pred EccCCCccc-ceeeccCcccceEEEEEccC---CCEEEEEcCCCcEEEEEcCCceEece-eccccccceeEEEEccCCCC
Q 018858 86 DVHMPASWR-PLESYNYNKEEINQIVCNPK---SSFLACADDGGDVKIIDIRQHCLYKS-LRAGHSSICSSVQFIPWKPW 160 (349)
Q Consensus 86 d~~~~~~~~-~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~ 160 (349)
++.+++... ....+.+|...|++++|+|+ +++|++++.|+.|++||+++++.+.. +. +|...|.+++|+ +
T Consensus 177 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~-~h~~~v~~~~~s-d--- 251 (450)
T 2vdu_B 177 DINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLF-GHKHFVSSICCG-K--- 251 (450)
T ss_dssp ETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECC-CCSSCEEEEEEC-S---
T ss_pred ecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeec-CCCCceEEEEEC-C---
Confidence 998765443 44456678899999999999 99999999999999999998887776 44 789999999997 4
Q ss_pred CCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEE
Q 018858 161 EGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRD 240 (349)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (349)
+++|++++.|+.|++||+++++......... .+..+.+.....
T Consensus 252 ---------------------------------~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~-- 294 (450)
T 2vdu_B 252 ---------------------------------DYLLLSAGGDDKIFAWDWKTGKNLSTFDYNS--LIKPYLNDQHLA-- 294 (450)
T ss_dssp ---------------------------------TTEEEEEESSSEEEEEETTTCCEEEEEECHH--HHGGGCCTTSBC--
T ss_pred ---------------------------------CCEEEEEeCCCeEEEEECCCCcEeeeecchh--hhhhhhhhcccc--
Confidence 6899999999999999999875544332110 000000000000
Q ss_pred EEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEee-CCCeEEEEec--CCCcceecccccceeeecccc
Q 018858 241 AEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG-NDKLVKVWDC--SRFQGVQTSINNDLLIKNINL 317 (349)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~-~d~~i~vwd~--~~~~~~~~~~~~~~~~~~~~~ 317 (349)
... ............|.++.|+ |++++|++++ .|+.|++|++ ...... ..+..+..|
T Consensus 295 ----------~~~-~~~~~~~~~~~~v~~i~~~---~~~~~l~~~~~~d~~i~iw~~~~~~~~~l------~~~~~~~~~ 354 (450)
T 2vdu_B 295 ----------PPR-FQNENNDIIEFAVSKIIKS---KNLPFVAFFVEATKCIIILEMSEKQKGDL------ALKQIITFP 354 (450)
T ss_dssp ---------------------CBCCCEEEEEEC---SSSSEEEEEETTCSEEEEEEECSSSTTCE------EEEEEEECS
T ss_pred ----------ccc-ccccccccceEEEEEEEEe---CCCCEEEEEECCCCeEEEEEeccCCCCce------eeccEeccC
Confidence 000 0000011234578999999 8999999998 8999999999 433111 233445556
Q ss_pred ccceEEEEeecCCCCcEEEe-eC------CCeEEEeeC
Q 018858 318 NKKVNWLCTTPTESENLVVC-DT------SKVVKVYSI 348 (349)
Q Consensus 318 ~~~v~~~~~~~~~~~~l~~~-~~------dg~i~iw~~ 348 (349)
..|.+++|+| ++ +++++ +. +..|.+|.+
T Consensus 355 -~~v~~~~~~~-~~-~~v~~~~~~~~~~~~~~i~v~~~ 389 (450)
T 2vdu_B 355 -YNVISLSAHN-DE-FQVTLDNKESSGVQKNFAKFIEY 389 (450)
T ss_dssp -SCEEEEEEET-TE-EEEEECCTTCCSSCCCSEEEEEE
T ss_pred -CceEEEEecC-Cc-EEEEEecccCCCCCCcceEEEEE
Confidence 7899999988 54 45554 32 456788864
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-34 Score=242.68 Aligned_cols=237 Identities=13% Similarity=0.101 Sum_probs=184.6
Q ss_pred CCceeeeEEEEecCCCceEEEeCCCCcEE-----------------E----------EECCCCcEEEEee-cCCCCeEEE
Q 018858 13 GHKATATCCIASRDRPGFVASSGEDGCIC-----------------W----------FDLRSKDVQLVTD-VGNGPVTSL 64 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~t~~~dg~i~-----------------v----------wd~~~~~~~~~~~-~~~~~v~~~ 64 (349)
.-...|.+++|+|| |+++||++.|++|+ + |++.+++....+. .|...|.++
T Consensus 13 ~~~~~v~sv~~SpD-G~~iASas~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~v 91 (588)
T 2j04_A 13 EFEDWKNNLTWARD-GTLYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVC 91 (588)
T ss_dssp CCSSSSCCEEECTT-SCEEEECSSSEEEEEECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEE
T ss_pred HhhccEEEEEECCC-CCEEEEEcCCceeecccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEE
Confidence 44577889999998 88999999998884 1 2222222111122 357789999
Q ss_pred EEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCccc-----ceEEEEEccCCCEEEEEcCCCcEEEEEcCCce---
Q 018858 65 CFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKE-----EINQIVCNPKSSFLACADDGGDVKIIDIRQHC--- 136 (349)
Q Consensus 65 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--- 136 (349)
+|+|+|++||+++.||.|++||.+. .+..+. |.. .+.+++|+|+|++||+|+.||.|++||+.+++
T Consensus 92 awSPdG~~LAs~s~dg~V~iwd~~~-----~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~ 165 (588)
T 2j04_A 92 KPSPIDDWMAVLSNNGNVSVFKDNK-----MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENT 165 (588)
T ss_dssp EECSSSSCEEEEETTSCEEEEETTE-----EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTC
T ss_pred EECCCCCEEEEEeCCCcEEEEeCCc-----eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCcccc
Confidence 9999999999999999999999642 344444 443 59999999999999999999999999999875
Q ss_pred ----Eeceec---cccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEE
Q 018858 137 ----LYKSLR---AGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVI 209 (349)
Q Consensus 137 ----~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~ 209 (349)
.+..++ .+|...|.+++|+| ++ +++++.|+.|++|
T Consensus 166 ~~~i~l~ti~~~~~gh~~~V~sVawSP------------------------------------dg--Laass~D~tVrlW 207 (588)
T 2j04_A 166 PEFYFESSIRLSDAGSKDWVTHIVWYE------------------------------------DV--LVAALSNNSVFSM 207 (588)
T ss_dssp CCCEEEEEEECSCTTCCCCEEEEEEET------------------------------------TE--EEEEETTCCEEEE
T ss_pred ccceeeeeeecccccccccEEEEEEcC------------------------------------Cc--EEEEeCCCeEEEE
Confidence 245552 26778999999999 67 7888899999999
Q ss_pred EccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeee-cCCCcceEEEEEeeecCCccEEEEeeCC
Q 018858 210 NIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSV-GGHTAAASCVAFSMFGERGKYLISGGND 288 (349)
Q Consensus 210 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~i~~i~~~~~~~~~~~l~s~~~d 288 (349)
|+.++.. .....++ .+|...|.+++|+ +++||+++ +
T Consensus 208 d~~~~~~-------------------------------------~~~~~tL~~~h~~~V~svaFs-----g~~LASa~-~ 244 (588)
T 2j04_A 208 TVSASSH-------------------------------------QPVSRMIQNASRRKITDLKIV-----DYKVVLTC-P 244 (588)
T ss_dssp CCCSSSS-------------------------------------CCCEEEEECCCSSCCCCEEEE-----TTEEEEEC-S
T ss_pred ECCCCcc-------------------------------------ccceeeecccccCcEEEEEEE-----CCEEEEEe-C
Confidence 9986410 0122345 3688899999997 47898887 6
Q ss_pred CeEEEEecCCCcceecccccceeeeccccccceEEEEe--ecCCCCcEEEeeCCCeEEEeeC
Q 018858 289 KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCT--TPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 289 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
+.|++||+.++ .......+|...+..+++ +| ++..|++++.||+ ++|.+
T Consensus 245 ~tIkLWd~~~~---------~~~~~~~gh~~~V~~va~~~s~-d~~~La~a~edG~-klw~~ 295 (588)
T 2j04_A 245 GYVHKIDLKNY---------SISSLKTGSLENFHIIPLNHEK-ESTILLMSNKTSY-KVLLE 295 (588)
T ss_dssp SEEEEEETTTT---------EEEEEECSCCSCCCEEEETTCS-SCEEEEECSSCEE-EEEES
T ss_pred CeEEEEECCCC---------eEEEEEcCCCceEEEEEeeeCC-CCCEEEEEcCCCC-EEEee
Confidence 99999999986 443344489999999999 77 8888999999999 99986
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=236.31 Aligned_cols=249 Identities=14% Similarity=0.109 Sum_probs=196.5
Q ss_pred CCceeeeEEEEecCC--CceEEEeCCCCcEEEEECCCCc-EEEEeecCCCCeEEEEE------ecCCCEEEEEeCCCeEE
Q 018858 13 GHKATATCCIASRDR--PGFVASSGEDGCICWFDLRSKD-VQLVTDVGNGPVTSLCF------KSGNEDIIYVSSGKEVK 83 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~--~~~l~t~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~------~~~~~~l~~~~~dg~i~ 83 (349)
+|...|.+++|+|++ +++|++++.||.|++||+.+++ .+..+.+|...|.+++| +|++++|++++.||.|+
T Consensus 63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~ 142 (357)
T 3i2n_A 63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK 142 (357)
T ss_dssp EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEE
T ss_pred cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEE
Confidence 689999999999973 5899999999999999999887 78889999999999954 67899999999999999
Q ss_pred EEEccCCC-cccceeeccCc-ccceEEEE----EccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccC
Q 018858 84 SFDVHMPA-SWRPLESYNYN-KEEINQIV----CNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPW 157 (349)
Q Consensus 84 iwd~~~~~-~~~~~~~~~~~-~~~v~~~~----~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 157 (349)
+||+++++ ....+.....+ ...+.+++ |+|++++|++++.||.|++||+++++..... .+...+.+++|+|.
T Consensus 143 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~v~~~~~~~~ 220 (357)
T 3i2n_A 143 VWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWET--NIKNGVCSLEFDRK 220 (357)
T ss_dssp EECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEESCS
T ss_pred EEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeec--CCCCceEEEEcCCC
Confidence 99999764 23333222221 23788888 7889999999999999999999998876554 47889999999982
Q ss_pred CCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecC----CCCCCccceeee
Q 018858 158 KPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK----STTKPLKGSQST 233 (349)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~~~~~~~~ 233 (349)
+ .++++|++++.||.|++||+++.+...... ......+..++|
T Consensus 221 ~---------------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~ 267 (357)
T 3i2n_A 221 D---------------------------------ISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRH 267 (357)
T ss_dssp S---------------------------------SSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEE
T ss_pred C---------------------------------CCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEE
Confidence 0 036889999999999999998765433222 245678899999
Q ss_pred eccccEEEEeeeeeecCce-----------------------eeeeeeeecCCCcceEEEEEeeecCCccEEE-EeeCCC
Q 018858 234 SKVNIRDAEMEILDQSGGK-----------------------RLHLDYSVGGHTAAASCVAFSMFGERGKYLI-SGGNDK 289 (349)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~-s~~~d~ 289 (349)
+|+++.+++++..++.+.. ....+..+.+|...|++++|+ |++++|+ +++.|+
T Consensus 268 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s---~~~~~l~~s~~~d~ 344 (357)
T 3i2n_A 268 LPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWS---PDKRGLCVCSSFDQ 344 (357)
T ss_dssp ETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEEC---SSSTTEEEEEETTS
T ss_pred CCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEc---CCCCeEEEEecCCC
Confidence 9999943334433332111 124667788899999999999 8999888 899999
Q ss_pred eEEEEecCCC
Q 018858 290 LVKVWDCSRF 299 (349)
Q Consensus 290 ~i~vwd~~~~ 299 (349)
.|++||+.+.
T Consensus 345 ~i~iw~~~~~ 354 (357)
T 3i2n_A 345 TVRVLIVTKL 354 (357)
T ss_dssp EEEEEEECC-
T ss_pred cEEEEECCCc
Confidence 9999999875
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-33 Score=236.90 Aligned_cols=260 Identities=12% Similarity=0.093 Sum_probs=197.4
Q ss_pred CcEEEEECCCCcEEEEeecCCCCeEEEEEecCCC-EEEEEeCCCeEEEEEc----cCCCc------ccceee-ccC----
Q 018858 38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNE-DIIYVSSGKEVKSFDV----HMPAS------WRPLES-YNY---- 101 (349)
Q Consensus 38 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~----~~~~~------~~~~~~-~~~---- 101 (349)
..+.+|+++..........|..+|.+++|+|+++ +|++++.||.|++|++ .+++. ...+.. +..
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (425)
T 1r5m_A 25 SIDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASS 104 (425)
T ss_dssp ---------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC---
T ss_pred cccccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccc
Confidence 4456788876665555556779999999999999 9999999999999999 76652 111111 111
Q ss_pred --cccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCcee
Q 018858 102 --NKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFV 179 (349)
Q Consensus 102 --~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (349)
|...|++++|+|++++|++++.||.|++|| .+++.+..+. .|...|.+++|+|
T Consensus 105 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~-~~~~~v~~~~~~~----------------------- 159 (425)
T 1r5m_A 105 GKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLN-FHRAPIVSVKWNK----------------------- 159 (425)
T ss_dssp ---CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEEC-CCCSCEEEEEECT-----------------------
T ss_pred cCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeecc-CCCccEEEEEECC-----------------------
Confidence 567899999999999999999999999999 6777788888 8999999999999
Q ss_pred EEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCC--------------ccceeeeeccccEEEEeee
Q 018858 180 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKP--------------LKGSQSTSKVNIRDAEMEI 245 (349)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~ 245 (349)
++++|++++.||.|++||+++++........... .+..+.|++++.+++....
T Consensus 160 -------------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (425)
T 1r5m_A 160 -------------DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK 226 (425)
T ss_dssp -------------TSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGG
T ss_pred -------------CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCC
Confidence 7899999999999999999988776655443222 1788999999875553211
Q ss_pred --eeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEE
Q 018858 246 --LDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNW 323 (349)
Q Consensus 246 --~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 323 (349)
..............+..|...|.+++|+ |++++|++++.|+.|++||+.+. ..+..+..|...|.+
T Consensus 227 g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~---~~~~~l~~~~~d~~i~i~d~~~~---------~~~~~~~~~~~~i~~ 294 (425)
T 1r5m_A 227 GAIFVYQITEKTPTGKLIGHHGPISVLEFN---DTNKLLLSASDDGTLRIWHGGNG---------NSQNCFYGHSQSIVS 294 (425)
T ss_dssp GCEEEEETTCSSCSEEECCCSSCEEEEEEE---TTTTEEEEEETTSCEEEECSSSB---------SCSEEECCCSSCEEE
T ss_pred CeEEEEEcCCCceeeeeccCCCceEEEEEC---CCCCEEEEEcCCCEEEEEECCCC---------ccceEecCCCccEEE
Confidence 1111112234455677899999999999 89999999999999999999987 555666789999999
Q ss_pred EEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 324 LCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 324 ~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
++|+| ++ ++++++.||.|++||++
T Consensus 295 ~~~~~-~~-~l~~~~~d~~i~i~d~~ 318 (425)
T 1r5m_A 295 ASWVG-DD-KVISCSMDGSVRLWSLK 318 (425)
T ss_dssp EEEET-TT-EEEEEETTSEEEEEETT
T ss_pred EEECC-CC-EEEEEeCCCcEEEEECC
Confidence 99988 66 99999999999999974
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=242.70 Aligned_cols=211 Identities=17% Similarity=0.257 Sum_probs=173.2
Q ss_pred EEEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEcc-CCCEEEEEcCCCcEE
Q 018858 51 QLVTDVGNGPVTSLCFKS-GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNP-KSSFLACADDGGDVK 128 (349)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~ 128 (349)
......|...|++++|+| ++++||+|+.||.|+|||+.+++. ..+..+.+|...|++++|+| ++++|++++.||.|+
T Consensus 112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~-~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~ 190 (435)
T 4e54_B 112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDK-PTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR 190 (435)
T ss_dssp CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSC-CEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCc-eeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence 345567889999999999 567899999999999999987643 33344567899999999998 678999999999999
Q ss_pred EEEcCCceEeceec-cccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEE
Q 018858 129 IIDIRQHCLYKSLR-AGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVD 207 (349)
Q Consensus 129 i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 207 (349)
+||++++....... ..+...+.+++|+| ++++|++|+.||.|+
T Consensus 191 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~~~l~~g~~dg~i~ 234 (435)
T 4e54_B 191 LQDFKGNILRVFASSDTINIWFCSLDVSA------------------------------------SSRMVVTGDNVGNVI 234 (435)
T ss_dssp EEETTSCEEEEEECCSSCSCCCCCEEEET------------------------------------TTTEEEEECSSSBEE
T ss_pred EeeccCCceeEEeccCCCCccEEEEEECC------------------------------------CCCEEEEEeCCCcEe
Confidence 99998765433222 02344578899998 899999999999999
Q ss_pred EEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCcc-EEEEee
Q 018858 208 VINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK-YLISGG 286 (349)
Q Consensus 208 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~-~l~s~~ 286 (349)
+||++. +.+..+.+|...|++++|+ |++. +|++++
T Consensus 235 ~wd~~~-----------------------------------------~~~~~~~~h~~~v~~v~~~---p~~~~~~~s~s 270 (435)
T 4e54_B 235 LLNMDG-----------------------------------------KELWNLRMHKKKVTHVALN---PCCDWFLATAS 270 (435)
T ss_dssp EEESSS-----------------------------------------CBCCCSBCCSSCEEEEEEC---TTCSSEEEEEE
T ss_pred eeccCc-----------------------------------------ceeEEEecccceEEeeeec---CCCceEEEEec
Confidence 999975 4456778899999999999 7765 788999
Q ss_pred CCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 287 NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 287 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.|+.|++||+++.+.. ..+....+|...|++++|+| ++++|++++.||.|++||++
T Consensus 271 ~d~~v~iwd~~~~~~~------~~~~~~~~h~~~v~~~~~sp-dg~~l~s~~~D~~i~iwd~~ 326 (435)
T 4e54_B 271 VDQTVKIWDLRQVRGK------ASFLYSLPHRHPVNAACFSP-DGARLLTTDQKSEIRVYSAS 326 (435)
T ss_dssp TTSBCCEEETTTCCSS------SCCSBCCBCSSCEEECCBCT-TSSEEEEEESSSCEEEEESS
T ss_pred CcceeeEEeccccccc------ceEEEeeeccccccceeECC-CCCeeEEEcCCCEEEEEECC
Confidence 9999999999886432 22334467999999999988 88899999999999999974
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=236.32 Aligned_cols=284 Identities=15% Similarity=0.103 Sum_probs=219.2
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEE-----EeecCCCCeEEEEEecCCCEEEEEeCCC
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQL-----VTDVGNGPVTSLCFKSGNEDIIYVSSGK 80 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~dg 80 (349)
+.++.+..+ ..+.+++|+|+ +.++++++.++.|++||+.+++... .+.+|...|.+++|+|+++++++++.|+
T Consensus 114 ~~~~~~~~~-~~~~~~~~s~~-~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~ 191 (433)
T 3bws_A 114 RFISRFKTG-FQPKSVRFIDN-TRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQAN 191 (433)
T ss_dssp EEEEEEECS-SCBCCCEESSS-SEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGT
T ss_pred eEEEEEcCC-CCceEEEEeCC-CeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCC
Confidence 344455544 34568999995 8899999999999999999998876 3457888999999999999999999999
Q ss_pred eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEE-EEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCC
Q 018858 81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLA-CADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKP 159 (349)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 159 (349)
.|++||+++++.. ..+..+...+.+++|+|++++++ +++.++.|++||+++++.+..+. ....+.+++|+|
T Consensus 192 ~v~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~--- 263 (433)
T 3bws_A 192 AVHVFDLKTLAYK---ATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD--KIGLPRGLLLSK--- 263 (433)
T ss_dssp EEEEEETTTCCEE---EEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC--CCSEEEEEEECT---
T ss_pred EEEEEECCCceEE---EEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec--CCCCceEEEEcC---
Confidence 9999999876433 34445677899999999998775 55589999999999998888877 345689999999
Q ss_pred CCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEc--------CCCeEEEEEccCceeeeecCCCCCCcccee
Q 018858 160 WEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK--------GDGVVDVINIESELNISRSKSTTKPLKGSQ 231 (349)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 231 (349)
+++.+++++ .||.|++||+++++....... ...+..+
T Consensus 264 ---------------------------------~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~--~~~~~~~ 308 (433)
T 3bws_A 264 ---------------------------------DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGP--PGNKRHI 308 (433)
T ss_dssp ---------------------------------TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEE--EECEEEE
T ss_pred ---------------------------------CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccC--CCCcceE
Confidence 788888887 588999999998766554422 2366789
Q ss_pred eeeccccEEEEeeeeeecC----ceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeC---------------CCeEE
Q 018858 232 STSKVNIRDAEMEILDQSG----GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN---------------DKLVK 292 (349)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~---------------d~~i~ 292 (349)
+|+|+++.+++.+..+..+ ....+....+. +...+.+++|+ |+++++++++. ||.|+
T Consensus 309 ~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s---~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~ 384 (433)
T 3bws_A 309 VSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALS---PDGKYLYVSCRGPNHPTEGYLKKGLVLGKVY 384 (433)
T ss_dssp EECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEEC---TTSSEEEEEECCCCCTTTCTTSCCSSCCEEE
T ss_pred EECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEc---CCCCEEEEEecCCCccccccccccccceEEE
Confidence 9999998776544332221 11223333443 56778999999 89998888876 57999
Q ss_pred EEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeC-CCeEEEeeCC
Q 018858 293 VWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDT-SKVVKVYSIS 349 (349)
Q Consensus 293 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~iw~~~ 349 (349)
+||+.++ +.+..+.. ...+.+++|+| ++++|++++. |+.|++|+++
T Consensus 385 ~~d~~~~---------~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 385 VIDTTTD---------TVKEFWEA-GNQPTGLDVSP-DNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEETTTT---------EEEEEEEC-SSSEEEEEECT-TSCEEEEEETTTTEEEEEEET
T ss_pred EEECCCC---------cEEEEecC-CCCCceEEEcC-CCCEEEEEECCCCeEEEEEec
Confidence 9999987 34433333 45789999988 8888888874 9999999974
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-33 Score=233.84 Aligned_cols=217 Identities=17% Similarity=0.243 Sum_probs=182.8
Q ss_pred cEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccC--CCEEEEEcCCCc
Q 018858 49 DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK--SSFLACADDGGD 126 (349)
Q Consensus 49 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~ 126 (349)
+++..+.+|...|.+++|+|++++|++++.||.|++||+... ....+..+..|...|++++|+++ +++|++++.||.
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE-THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 80 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETT-EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCC-cceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence 456678899999999999999999999999999999999743 23555667788999999999977 899999999999
Q ss_pred EEEEEcCCce--EeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCC--CcEEEEEcC
Q 018858 127 VKIIDIRQHC--LYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT--NKICVVAKG 202 (349)
Q Consensus 127 i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~ 202 (349)
|++||+++++ .+..+. .|...|.+++|+| + +.+|++++.
T Consensus 81 v~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~------------------------------------~~~~~~l~~~~~ 123 (379)
T 3jrp_A 81 VLIWKEENGRWSQIAVHA-VHSASVNSVQWAP------------------------------------HEYGPLLLVASS 123 (379)
T ss_dssp EEEEEEETTEEEEEEEEC-CCSSCEEEEEECC------------------------------------GGGCSEEEEEET
T ss_pred EEEEEcCCCceeEeeeec-CCCcceEEEEeCC------------------------------------CCCCCEEEEecC
Confidence 9999999886 666777 7899999999999 6 899999999
Q ss_pred CCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecC-----
Q 018858 203 DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGE----- 277 (349)
Q Consensus 203 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~----- 277 (349)
||.|++||++.... .....+.+|...|.++.|+ |
T Consensus 124 d~~i~v~d~~~~~~--------------------------------------~~~~~~~~~~~~v~~~~~~---~~~~~~ 162 (379)
T 3jrp_A 124 DGKVSVVEFKENGT--------------------------------------TSPIIIDAHAIGVNSASWA---PATIEE 162 (379)
T ss_dssp TSEEEEEECCTTSC--------------------------------------CCEEEEECCTTCEEEEEEC---CCC---
T ss_pred CCcEEEEecCCCCc--------------------------------------eeeEEecCCCCceEEEEEc---Cccccc
Confidence 99999999986310 1223456788999999999 6
Q ss_pred --------CccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCC--CCcEEEeeCCCeEEEee
Q 018858 278 --------RGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTE--SENLVVCDTSKVVKVYS 347 (349)
Q Consensus 278 --------~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~iw~ 347 (349)
++.+|++++.|+.|++||+++..... .....+.+|...|.+++|+|.. +++|++++.||.|++||
T Consensus 163 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-----~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd 237 (379)
T 3jrp_A 163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY-----VLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 237 (379)
T ss_dssp -------CTTCEEEEEETTSCEEEEEEETTTTEE-----EEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred cccccCCCCCCEEEEEeCCCeEEEEEecCCCcce-----eeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEe
Confidence 68999999999999999998764321 3455677899999999999832 88999999999999999
Q ss_pred CC
Q 018858 348 IS 349 (349)
Q Consensus 348 ~~ 349 (349)
++
T Consensus 238 ~~ 239 (379)
T 3jrp_A 238 QD 239 (379)
T ss_dssp ES
T ss_pred CC
Confidence 63
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-32 Score=226.82 Aligned_cols=254 Identities=16% Similarity=0.175 Sum_probs=189.4
Q ss_pred CCCeeeeCCceeeeEEEEecC-CCceEEEeCCCCcEEEEECCCC---------cEEEEeecCCCCeEEEEEecC--CCEE
Q 018858 6 AKPRRLRGHKATATCCIASRD-RPGFVASSGEDGCICWFDLRSK---------DVQLVTDVGNGPVTSLCFKSG--NEDI 73 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~-~~~~l~t~~~dg~i~vwd~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~l 73 (349)
+....+.+|...|++++|+|. ++++|++++.||.|++||+.++ +.+..+..|...|.+++|+|+ +++|
T Consensus 48 ~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 127 (351)
T 3f3f_A 48 ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL 127 (351)
T ss_dssp EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEE
T ss_pred eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEE
Confidence 356778899999999999993 2799999999999999999876 557788889999999999999 9999
Q ss_pred EEEeCCCeEEEEEccCCCcccceee----------ccCcccceEEEEEccC---CCEEEEEcCCCcEEEEEcCCceE--e
Q 018858 74 IYVSSGKEVKSFDVHMPASWRPLES----------YNYNKEEINQIVCNPK---SSFLACADDGGDVKIIDIRQHCL--Y 138 (349)
Q Consensus 74 ~~~~~dg~i~iwd~~~~~~~~~~~~----------~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~--~ 138 (349)
++++.||.|++||+++++....+.. ...+...+.+++|+|+ +.++++++.++.+.+|+...++. +
T Consensus 128 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 207 (351)
T 3f3f_A 128 ACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVA 207 (351)
T ss_dssp EEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEE
T ss_pred EEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeee
Confidence 9999999999999987654433221 1246678999999997 89999999999998888877654 6
Q ss_pred ceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCC----cEEEEEcCCCeEEEEEccCc
Q 018858 139 KSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTN----KICVVAKGDGVVDVINIESE 214 (349)
Q Consensus 139 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~ 214 (349)
..+. +|...|.+++|+| ++ ++|++++.||.|++||++..
T Consensus 208 ~~~~-~h~~~i~~~~~~p------------------------------------~~~~~~~~l~s~~~dg~i~iwd~~~~ 250 (351)
T 3f3f_A 208 AKLP-GHKSLIRSISWAP------------------------------------SIGRWYQLIATGCKDGRIRIFKITEK 250 (351)
T ss_dssp EECC-CCCSCEEEEEECC------------------------------------CSSCSSEEEEEEETTSCEEEEEEEEC
T ss_pred eecC-CCCcceeEEEECC------------------------------------CCCCcceEEEEEcCCCeEEEEeCCCC
Confidence 6677 8999999999999 55 89999999999999999875
Q ss_pred eeeeecCCCCCCccceeeeeccccEEEEe-------eeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeC
Q 018858 215 LNISRSKSTTKPLKGSQSTSKVNIRDAEM-------EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN 287 (349)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~ 287 (349)
......... .........++........ .............+..+.+|...|++++|+ |++++|++++.
T Consensus 251 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s---~~~~~l~s~~~ 326 (351)
T 3f3f_A 251 LSPLASEES-LTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWN---LTGTILSSAGD 326 (351)
T ss_dssp C----------------------------------------CCSEEEEEEEEECTTSSCEEEEEEC---SSSCCEEEEET
T ss_pred cCccccCCc-ccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEc---CCCCEEEEecC
Confidence 433221111 1111122222222222210 001111223456777888999999999999 89999999999
Q ss_pred CCeEEEEecCCCc
Q 018858 288 DKLVKVWDCSRFQ 300 (349)
Q Consensus 288 d~~i~vwd~~~~~ 300 (349)
||.|++||+.++.
T Consensus 327 dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 327 DGKVRLWKATYSN 339 (351)
T ss_dssp TSCEEEEEECTTS
T ss_pred CCcEEEEecCcCc
Confidence 9999999999874
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-32 Score=230.51 Aligned_cols=219 Identities=17% Similarity=0.211 Sum_probs=180.9
Q ss_pred EECCCCcEEEEeecCCCCeEEEEEecCC-CEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEcc-CCCEEEE
Q 018858 43 FDLRSKDVQLVTDVGNGPVTSLCFKSGN-EDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNP-KSSFLAC 120 (349)
Q Consensus 43 wd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~ 120 (349)
|++...+....+.+|...|.+++|+|++ ++|++++.||.|++||+.+++.... ....+|...|.+++|+| ++++|++
T Consensus 58 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~l~s 136 (383)
T 3ei3_B 58 RSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSF-IQGMGPGDAITGMKFNQFNTNQLFV 136 (383)
T ss_dssp HHHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEE-ECCCSTTCBEEEEEEETTEEEEEEE
T ss_pred ccccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccccee-eecCCcCCceeEEEeCCCCCCEEEE
Confidence 3445566678889999999999999999 9999999999999999997643322 22345889999999999 6799999
Q ss_pred EcCCCcEEEEEcCCceEeceec--cccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEE
Q 018858 121 ADDGGDVKIIDIRQHCLYKSLR--AGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV 198 (349)
Q Consensus 121 ~~~dg~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 198 (349)
++.|+.|++||+++. .+..+. ..+...+.+++|+| ++++|+
T Consensus 137 ~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~------------------------------------~~~~l~ 179 (383)
T 3ei3_B 137 SSIRGATTLRDFSGS-VIQVFAKTDSWDYWYCCVDVSV------------------------------------SRQMLA 179 (383)
T ss_dssp EETTTEEEEEETTSC-EEEEEECCCCSSCCEEEEEEET------------------------------------TTTEEE
T ss_pred EeCCCEEEEEECCCC-ceEEEeccCCCCCCeEEEEECC------------------------------------CCCEEE
Confidence 999999999999864 444443 03347799999999 789999
Q ss_pred EEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCC
Q 018858 199 VAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGER 278 (349)
Q Consensus 199 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~ 278 (349)
+++.||.|++||++. ..+..+.+|...|.+++|+ |+
T Consensus 180 ~~~~d~~i~i~d~~~-----------------------------------------~~~~~~~~h~~~v~~~~~~---~~ 215 (383)
T 3ei3_B 180 TGDSTGRLLLLGLDG-----------------------------------------HEIFKEKLHKAKVTHAEFN---PR 215 (383)
T ss_dssp EEETTSEEEEEETTS-----------------------------------------CEEEEEECSSSCEEEEEEC---SS
T ss_pred EECCCCCEEEEECCC-----------------------------------------CEEEEeccCCCcEEEEEEC---CC
Confidence 999999999999964 4556777899999999999 88
Q ss_pred cc-EEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 279 GK-YLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 279 ~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
++ +|++++.|+.|++||+++.+... ..+... +|...|.+++|+|.++++|++++.|+.|++||++
T Consensus 216 ~~~~l~s~~~d~~i~iwd~~~~~~~~-----~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~ 281 (383)
T 3ei3_B 216 CDWLMATSSVDATVKLWDLRNIKDKN-----SYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSY 281 (383)
T ss_dssp CTTEEEEEETTSEEEEEEGGGCCSTT-----CEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETT
T ss_pred CCCEEEEEeCCCEEEEEeCCCCCccc-----ceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECC
Confidence 88 99999999999999998742110 333333 7999999999988678899999999999999974
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-31 Score=227.38 Aligned_cols=238 Identities=16% Similarity=0.222 Sum_probs=191.4
Q ss_pred eeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEee--cCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccc
Q 018858 18 ATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD--VGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRP 95 (349)
Q Consensus 18 i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 95 (349)
++.|+|+++ ++|++|. |++|+|||..+++....+. .|...|++++|+|+|++|++|+.||.|++||++++ +.
T Consensus 108 ~~~l~wS~~--n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~---~~ 181 (420)
T 4gga_A 108 LNLVDWSSG--NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ---KR 181 (420)
T ss_dssp CBCEEECTT--SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EE
T ss_pred ceeEEECCC--CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC---cE
Confidence 567999975 5777765 8999999999999876655 57788999999999999999999999999999976 44
Q ss_pred eeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCC-ceEeceeccccccceeEEEEccCCCCCCCCCCCCCCcccc
Q 018858 96 LESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ-HCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCY 174 (349)
Q Consensus 96 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (349)
+..+.+|...+.+++++ +..+++|+.|+.+++||.+. ...+..+. +|...+..+.+.|
T Consensus 182 ~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~-~h~~~~~~~~~~~------------------ 240 (420)
T 4gga_A 182 LRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLS-GHSQEVCGLRWAP------------------ 240 (420)
T ss_dssp EEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEE-CCSSCEEEEEECT------------------
T ss_pred EEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEec-ccccceeeeeecC------------------
Confidence 56667788889888775 67999999999999999985 44556777 8999999999999
Q ss_pred CCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceee
Q 018858 175 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRL 254 (349)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (349)
+++++++++.|+.+++|+...++. ..
T Consensus 241 ------------------~g~~l~s~~~D~~v~i~~~~~~~~------------------------------------~~ 266 (420)
T 4gga_A 241 ------------------DGRHLASGGNDNLVNVWPSAPGEG------------------------------------GW 266 (420)
T ss_dssp ------------------TSSEEEEEETTSCEEEEESSCCSS------------------------------------CS
T ss_pred ------------------CCCeeeeeeccccceEEeeccccc------------------------------------cc
Confidence 799999999999999999986421 11
Q ss_pred eeeeeecCCCcceEEEEEeeecCCccEEEE--eeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCC
Q 018858 255 HLDYSVGGHTAAASCVAFSMFGERGKYLIS--GGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESE 332 (349)
Q Consensus 255 ~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s--~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 332 (349)
..+.....|...|.+++|+| .+..++++ |+.|+.|++||+.++ ....... +...+.++.|++ +++
T Consensus 267 ~~~~~~~~~~~~V~~~~~~p--~~~~~la~~~gs~D~~I~iwd~~t~---------~~~~~~~-~~~~v~~~~~~~-~~~ 333 (420)
T 4gga_A 267 VPLQTFTQHQGAVKAVAWCP--WQSNVLATGGGTSDRHIRIWNVCSG---------ACLSAVD-AHSQVCSILWSP-HYK 333 (420)
T ss_dssp CCSEEECCCSSCEEEEEECT--TCTTEEEEEECTTTCEEEEEETTTT---------EEEEEEE-CSSCEEEEEEET-TTT
T ss_pred eeeeeecccCCceeeeeeCC--CcccEEEEEeecCCCEEEEEeCCcc---------ccceeec-cccceeeeeecC-CCC
Confidence 23445667889999999994 23455554 458999999999997 4443443 445788889988 566
Q ss_pred cEEEee--CCCeEEEeeCC
Q 018858 333 NLVVCD--TSKVVKVYSIS 349 (349)
Q Consensus 333 ~l~~~~--~dg~i~iw~~~ 349 (349)
.+++++ .|+.|+|||++
T Consensus 334 ~lv~~sg~~d~~I~iwd~~ 352 (420)
T 4gga_A 334 ELISGHGFAQNQLVIWKYP 352 (420)
T ss_dssp EEEEEECTTTCCEEEEETT
T ss_pred eEEEEEecCCCEEEEEECC
Confidence 666654 79999999974
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-32 Score=215.43 Aligned_cols=265 Identities=9% Similarity=0.019 Sum_probs=172.7
Q ss_pred CCeeeeCCce----eeeEEEEecCCCc--eEEEeCCCCcEEEEECCCC---cEEEEeecCCC------------------
Q 018858 7 KPRRLRGHKA----TATCCIASRDRPG--FVASSGEDGCICWFDLRSK---DVQLVTDVGNG------------------ 59 (349)
Q Consensus 7 ~~~~l~~h~~----~i~~~~~~~~~~~--~l~t~~~dg~i~vwd~~~~---~~~~~~~~~~~------------------ 59 (349)
++.+|+.-.+ .+.++-|-..+.+ -++++++ ..|++|+..++ +.++++..|..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 105 (356)
T 2w18_A 27 LVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVA 105 (356)
T ss_dssp EEEEECCCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEE
T ss_pred eeehhcCCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeee
Confidence 4445554333 2445545333222 3666665 68999999988 67788877764
Q ss_pred -------CeEEEEEecC----CCEEEEEeC--------------------CCeEEEEEccCCCcccceeeccCcccceEE
Q 018858 60 -------PVTSLCFKSG----NEDIIYVSS--------------------GKEVKSFDVHMPASWRPLESYNYNKEEINQ 108 (349)
Q Consensus 60 -------~v~~~~~~~~----~~~l~~~~~--------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 108 (349)
.|.+++++|+ ++.+++++. |+.|++|++... .+.+..+..|...++.
T Consensus 106 ~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~d--G~~~~s~~~~~~~v~~ 183 (356)
T 2w18_A 106 LGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAED--GGGKENQFLMPPEETI 183 (356)
T ss_dssp ECSSSEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTT--SCEEEEEEECCCSSCE
T ss_pred eccccccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCC--CceeeeeccCCCceee
Confidence 3556777778 777776553 778888888431 1333444556777888
Q ss_pred EEEcc---CCCEEEEEcCCCcEEEEEcCCceEeceeccccc---cceeEEEEccCCCCCCCCCCCCCCccccCCceeEEe
Q 018858 109 IVCNP---KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHS---SICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAI 182 (349)
Q Consensus 109 ~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (349)
++|+| ++.+|++++.|++|+|||++++++++++. +|. ..+.+++|+|++..+ +
T Consensus 184 l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~-g~~~~v~~v~~vafSpdG~~l--------------------v 242 (356)
T 2w18_A 184 LTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMH-IDDSYQASVCHKAYSEMGLLF--------------------I 242 (356)
T ss_dssp EEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEE-CCC---CCCEEEEEEETTEEE--------------------E
T ss_pred EEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEc-CCCcceeeeEEEEECCCCCEE--------------------E
Confidence 88888 67899999999999999999999999997 543 356777899942211 0
Q ss_pred ecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecC
Q 018858 183 AIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGG 262 (349)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (349)
..+. +.....+++|+.|++|++||..+++..... ......+
T Consensus 243 s~s~----~~~~w~laSGs~D~tIklWd~~tgk~l~v~-----------------------------------~~~~p~G 283 (356)
T 2w18_A 243 VLSH----PCAKESESLRSPVFQLIVINPKTTLSVGVM-----------------------------------LYCLPPG 283 (356)
T ss_dssp EEC----------------CCEEEEEEETTTTEEEEEE-----------------------------------EECCCTT
T ss_pred Eecc----CCCcceeeccCCCcEEEEEECCCCEEEEEE-----------------------------------EeeccCC
Confidence 0000 001113477889999999999875322100 0000135
Q ss_pred CCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceE-EEEeecCCCCcEEEeeCCC
Q 018858 263 HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVN-WLCTTPTESENLVVCDTSK 341 (349)
Q Consensus 263 h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg 341 (349)
|...+.+.. .++.++++++.|++|+|||+.++ +.+..+.+|...+. .++|+| ++++|++|+.|+
T Consensus 284 h~~~~lsg~-----~sg~~lASgS~DgTIkIWDl~tG---------k~l~tL~gH~~~vvs~vafSP-DG~~LaSGS~D~ 348 (356)
T 2w18_A 284 QAGRFLEGD-----VKDHCAAAILTSGTIAIWDLLLG---------QCTALLPPVSDQHWSFVKWSG-TDSHLLAGQKDG 348 (356)
T ss_dssp CCCCEEEEE-----EETTEEEEEETTSCEEEEETTTC---------SEEEEECCC--CCCCEEEECS-SSSEEEEECTTS
T ss_pred CcceeEccc-----cCCCEEEEEcCCCcEEEEECCCC---------cEEEEecCCCCCeEEEEEECC-CCCEEEEEECCC
Confidence 655543333 34789999999999999999998 67778888887766 589988 899999999999
Q ss_pred eEEEeeCC
Q 018858 342 VVKVYSIS 349 (349)
Q Consensus 342 ~i~iw~~~ 349 (349)
+|+|||++
T Consensus 349 TIklWd~~ 356 (356)
T 2w18_A 349 NIFVYHYS 356 (356)
T ss_dssp CEEEEEEC
T ss_pred cEEEecCC
Confidence 99999974
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-32 Score=224.29 Aligned_cols=245 Identities=11% Similarity=0.027 Sum_probs=190.3
Q ss_pred EEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCC-EEEEEcCCCcEEEE
Q 018858 52 LVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSS-FLACADDGGDVKII 130 (349)
Q Consensus 52 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~ 130 (349)
....+|...|.+++|+|++++|++++.|+.|++|++.++...........|...|.+++|+|+++ +|++|+.||.|++|
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w 84 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV 84 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEE
Confidence 33457999999999999999999999999999999987653333444456788999999999999 99999999999999
Q ss_pred Ec-CCceEeceeccc--cccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEE
Q 018858 131 DI-RQHCLYKSLRAG--HSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVD 207 (349)
Q Consensus 131 d~-~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 207 (349)
|+ .+++. ..+. . |...|.+++|+| +++|++++.|+.|+
T Consensus 85 d~~~~~~~-~~~~-~~~~~~~v~~l~~~~-------------------------------------~~~l~s~~~d~~i~ 125 (342)
T 1yfq_A 85 DLIGSPSF-QALT-NNEANLGICRICKYG-------------------------------------DDKLIAASWDGLIE 125 (342)
T ss_dssp CSSSSSSE-EECB-SCCCCSCEEEEEEET-------------------------------------TTEEEEEETTSEEE
T ss_pred EeccCCce-Eecc-ccCCCCceEEEEeCC-------------------------------------CCEEEEEcCCCeEE
Confidence 99 77755 5666 7 899999999987 57899999999999
Q ss_pred EEEccC---------ceeeeecCCCCCCccceeeeeccccEEEEeeeeeecC----cee---eeeeeeecCCCcceEEEE
Q 018858 208 VINIES---------ELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG----GKR---LHLDYSVGGHTAAASCVA 271 (349)
Q Consensus 208 i~d~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~h~~~i~~i~ 271 (349)
+||+++ .+...... ....+.+++|++++ +++ +..++.+ ... .........|...|.++.
T Consensus 126 iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~--l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~ 200 (342)
T 1yfq_A 126 VIDPRNYGDGVIAVKNLNSNNTK--VKNKIFTMDTNSSR--LIV-GMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVA 200 (342)
T ss_dssp EECHHHHTTBCEEEEESCSSSSS--SCCCEEEEEECSSE--EEE-EESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEE
T ss_pred EEcccccccccccccCCeeeEEe--eCCceEEEEecCCc--EEE-EeCCCeEEEEECCccccccceeeecCCCCceeEEE
Confidence 999987 54444333 55778899999998 332 2222111 111 112223446788999999
Q ss_pred EeeecC-CccEEEEeeCCCeEEEEecCCC--cceecccccceeeecccc---------ccceEEEEeecCCCCcEEEeeC
Q 018858 272 FSMFGE-RGKYLISGGNDKLVKVWDCSRF--QGVQTSINNDLLIKNINL---------NKKVNWLCTTPTESENLVVCDT 339 (349)
Q Consensus 272 ~~~~~~-~~~~l~s~~~d~~i~vwd~~~~--~~~~~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~~l~~~~~ 339 (349)
|+ | +++++++++.||.|++|+++.. .... .....+..| ...|.+++|+| ++++|++++.
T Consensus 201 ~~---~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~ 271 (342)
T 1yfq_A 201 LL---PKEQEGYACSSIDGRVAVEFFDDQGDDYNS-----SKRFAFRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGS 271 (342)
T ss_dssp EC---SGGGCEEEEEETTSEEEEEECCTTCCSTTC-----TTCEEEECCCCCTTCCSSCCCEEEEEECT-TTCCEEEEET
T ss_pred EC---CCCCCEEEEEecCCcEEEEEEcCCCccccc-----ccceeeecccccccccccceeEEEEEEcC-CCCEEEEecC
Confidence 99 9 9999999999999999999875 1000 222334444 44999999988 8889999999
Q ss_pred CCeEEEeeCC
Q 018858 340 SKVVKVYSIS 349 (349)
Q Consensus 340 dg~i~iw~~~ 349 (349)
||.|++||+.
T Consensus 272 dg~i~vwd~~ 281 (342)
T 1yfq_A 272 DGIISCWNLQ 281 (342)
T ss_dssp TSCEEEEETT
T ss_pred CceEEEEcCc
Confidence 9999999974
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-31 Score=217.27 Aligned_cols=240 Identities=14% Similarity=0.136 Sum_probs=192.7
Q ss_pred CcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcE
Q 018858 48 KDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDV 127 (349)
Q Consensus 48 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 127 (349)
.+....+.+|...|.+++| |++++|++++.||.|++||+.+++ ....+..|...+.+++|+|++++|++++.||.|
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 83 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQW---LGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMI 83 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSE---EEEEEEECSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCE---EEEEeecCCccEEEEEECCCCCEEEEecCCCeE
Confidence 3567889999999999999 999999999999999999998653 344455577899999999999999999999999
Q ss_pred EEEEcCCc---eEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCC
Q 018858 128 KIIDIRQH---CLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG 204 (349)
Q Consensus 128 ~i~d~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 204 (349)
++|++... +.+..+. .|...+.+++|. ++++++++.||
T Consensus 84 ~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~--------------------------------------~~~l~~~~~d~ 124 (313)
T 3odt_A 84 NGVPLFATSGEDPLYTLI-GHQGNVCSLSFQ--------------------------------------DGVVISGSWDK 124 (313)
T ss_dssp EEEETTCCTTSCC-CEEC-CCSSCEEEEEEE--------------------------------------TTEEEEEETTS
T ss_pred EEEEeeecCCCCcccchh-hcccCEEEEEec--------------------------------------CCEEEEEeCCC
Confidence 99998753 5566777 899999999994 46899999999
Q ss_pred eEEEEEccCceeeeecCCCCCCccceeeeec-cccEEEEeeeeeecCc--eeeeeeeeecC-CCcceEEEEEeeecCCcc
Q 018858 205 VVDVINIESELNISRSKSTTKPLKGSQSTSK-VNIRDAEMEILDQSGG--KRLHLDYSVGG-HTAAASCVAFSMFGERGK 280 (349)
Q Consensus 205 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~-h~~~i~~i~~~~~~~~~~ 280 (349)
.|++|| ......... .....+..+.+.| ++..+++. ..++.+. ........+.. |...+.+++|+ |++.
T Consensus 125 ~i~~~d--~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~---~~~~ 197 (313)
T 3odt_A 125 TAKVWK--EGSLVYNLQ-AHNASVWDAKVVSFSENKFLTA-SADKTIKLWQNDKVIKTFSGIHNDVVRHLAVV---DDGH 197 (313)
T ss_dssp EEEEEE--TTEEEEEEE-CCSSCEEEEEEEETTTTEEEEE-ETTSCEEEEETTEEEEEECSSCSSCEEEEEEE---ETTE
T ss_pred CEEEEc--CCcEEEecc-cCCCceeEEEEccCCCCEEEEE-ECCCCEEEEecCceEEEEeccCcccEEEEEEc---CCCe
Confidence 999999 333333222 2456778888888 88888753 2222211 12234455555 88999999999 7887
Q ss_pred EEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 281 YLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 281 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
+++++.|+.|++||++++ ..+..+..|...|++++|+| ++ .|++++.||.|++||++
T Consensus 198 -~~~~~~dg~i~i~d~~~~---------~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~v~iwd~~ 254 (313)
T 3odt_A 198 -FISCSNDGLIKLVDMHTG---------DVLRTYEGHESFVYCIKLLP-NG-DIVSCGEDRTVRIWSKE 254 (313)
T ss_dssp -EEEEETTSEEEEEETTTC---------CEEEEEECCSSCEEEEEECT-TS-CEEEEETTSEEEEECTT
T ss_pred -EEEccCCCeEEEEECCch---------hhhhhhhcCCceEEEEEEec-CC-CEEEEecCCEEEEEECC
Confidence 999999999999999987 56677788999999999988 66 69999999999999974
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-32 Score=231.53 Aligned_cols=235 Identities=11% Similarity=0.115 Sum_probs=170.1
Q ss_pred CCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCC-----CeEEEEEecCCCEEEEEeCCCeEEEEEc
Q 018858 13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNG-----PVTSLCFKSGNEDIIYVSSGKEVKSFDV 87 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 87 (349)
.|...|.+++|+|+ |++||+++.||.+++||.+. ++..+. |.. .|.+++|+|+|++|++|+.||+|++||+
T Consensus 83 ~~~~~V~~vawSPd-G~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~ 158 (588)
T 2j04_A 83 QPVCYPRVCKPSPI-DDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSI 158 (588)
T ss_dssp SCSCCEEEEEECSS-SSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEEC
T ss_pred CCCCcEEEEEECCC-CCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEEC
Confidence 46889999999998 89999999999999999654 666667 665 5999999999999999999999999999
Q ss_pred cCCCccc----ceeec----cCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceE---eceeccccccceeEEEEcc
Q 018858 88 HMPASWR----PLESY----NYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL---YKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 88 ~~~~~~~----~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~~ 156 (349)
.++.... .+..+ .+|...|.+++|+|++ +++++.|+.|++||+.+++. ..+++.+|...|.+++|+
T Consensus 159 ~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs- 235 (588)
T 2j04_A 159 RKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV- 235 (588)
T ss_dssp CCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE-
T ss_pred CCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE-
Confidence 9764211 23443 5677899999999999 88888999999999987763 244532677889999996
Q ss_pred CCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeecc
Q 018858 157 WKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKV 236 (349)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (349)
++.|++++ ++.|++||+.+++....
T Consensus 236 -------------------------------------g~~LASa~-~~tIkLWd~~~~~~~~~----------------- 260 (588)
T 2j04_A 236 -------------------------------------DYKVVLTC-PGYVHKIDLKNYSISSL----------------- 260 (588)
T ss_dssp -------------------------------------TTEEEEEC-SSEEEEEETTTTEEEEE-----------------
T ss_pred -------------------------------------CCEEEEEe-CCeEEEEECCCCeEEEE-----------------
Confidence 25788887 69999999997543111
Q ss_pred ccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEE--eeecCCccEEEEeeCCCeEEEEecCCCc-----ce-ecc---
Q 018858 237 NIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAF--SMFGERGKYLISGGNDKLVKVWDCSRFQ-----GV-QTS--- 305 (349)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~--~~~~~~~~~l~s~~~d~~i~vwd~~~~~-----~~-~~~--- 305 (349)
..+|...++.+.| + |++..++++++||+ ++|..+.-. .. ...
T Consensus 261 -----------------------~~gh~~~V~~va~~~s---~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~ 313 (588)
T 2j04_A 261 -----------------------KTGSLENFHIIPLNHE---KESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKK 313 (588)
T ss_dssp -----------------------ECSCCSCCCEEEETTC---SSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHH
T ss_pred -----------------------EcCCCceEEEEEeeeC---CCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCE
Confidence 1145555555555 5 55555555555555 555543110 00 000
Q ss_pred -----cccceeeeccccccceEEEEeecCCCCcEEEee
Q 018858 306 -----INNDLLIKNINLNKKVNWLCTTPTESENLVVCD 338 (349)
Q Consensus 306 -----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 338 (349)
.....+..+ .+...|.+++++| +|+.+|+++
T Consensus 314 v~lW~~~g~~l~~~-~~~~~I~~va~SP-dG~~lA~~~ 349 (588)
T 2j04_A 314 FKKWSTIWNEFNNY-ETTLVIHGISLSP-DGYSIAIVY 349 (588)
T ss_dssp HHHTTTTTTSSSSS-CCEEEEEEEEECT-TSSEEEEEE
T ss_pred EEEEECCCCceeee-ccceEEEEEEECC-CCCEEEEEE
Confidence 000222233 3366799999988 998999886
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=229.82 Aligned_cols=229 Identities=20% Similarity=0.285 Sum_probs=186.7
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcE-------EEEeecCCCCeEEEEEec-CCCEEEEE
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV-------QLVTDVGNGPVTSLCFKS-GNEDIIYV 76 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~-------~~~~~~~~~~v~~~~~~~-~~~~l~~~ 76 (349)
...+..+.+|...|++++|+|++..+|++|+.||.|++||+..+.. ...+..|...|.+++|+| ++.+|+++
T Consensus 171 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~ 250 (430)
T 2xyi_A 171 CQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSV 250 (430)
T ss_dssp CCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEE
T ss_pred CCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEE
Confidence 5788899999999999999998433999999999999999987322 355678999999999999 77889999
Q ss_pred eCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCC-EEEEEcCCCcEEEEEcCC-ceEeceeccccccceeEEEE
Q 018858 77 SSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSS-FLACADDGGDVKIIDIRQ-HCLYKSLRAGHSSICSSVQF 154 (349)
Q Consensus 77 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~v~~~~~ 154 (349)
+.||.|++||++++.....+..+..|...|++++|+|++. ++++|+.||.|++||+++ ..++..+. .|...|.+++|
T Consensus 251 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~-~h~~~v~~i~~ 329 (430)
T 2xyi_A 251 ADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE-SHKDEIFQVQW 329 (430)
T ss_dssp ETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE-CCSSCEEEEEE
T ss_pred eCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEee-cCCCCEEEEEE
Confidence 9999999999997643455556667889999999999886 688999999999999997 56677787 89999999999
Q ss_pred ccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCC-cEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeee
Q 018858 155 IPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTN-KICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQST 233 (349)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 233 (349)
+| ++ .+|++++.||.|++||+...........
T Consensus 330 sp------------------------------------~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----------- 362 (430)
T 2xyi_A 330 SP------------------------------------HNETILASSGTDRRLHVWDLSKIGEEQSTED----------- 362 (430)
T ss_dssp CS------------------------------------SCTTEEEEEETTSCCEEEEGGGTTCCCCHHH-----------
T ss_pred CC------------------------------------CCCCEEEEEeCCCcEEEEeCCCCccccCccc-----------
Confidence 99 55 5799999999999999986211000000
Q ss_pred eccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCcc-EEEEeeCCCeEEEEecCCC
Q 018858 234 SKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK-YLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~ 299 (349)
.. .....++..+.+|...|++++|+ |+++ +|++++.||.|+||++...
T Consensus 363 ~~---------------~~~~~~~~~~~~h~~~v~~~~~~---p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 363 AE---------------DGPPELLFIHGGHTAKISDFSWN---PNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp HH---------------HCCTTEEEECCCCSSCEEEEEEC---SSSTTEEEEEETTSEEEEEEECHH
T ss_pred cc---------------cCCcceEEEcCCCCCCceEEEEC---CCCCCEEEEEECCCCEEEeEcccc
Confidence 00 00114556677899999999999 8888 8999999999999999864
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-30 Score=219.76 Aligned_cols=246 Identities=11% Similarity=0.109 Sum_probs=194.8
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceE-EEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEe-CCCe
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFV-ASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVS-SGKE 81 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l-~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~ 81 (349)
+++.++.+.+|.. +.+++|+|+ ++++ ++++.|+.|++||+.+++.+..+..+. .+.+++|+|++++|++++ .++.
T Consensus 21 ~~~~~~~~~~~~~-~~~~~~s~d-g~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~ 97 (391)
T 1l0q_A 21 SNKVTATIPVGSN-PMGAVISPD-GTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASST 97 (391)
T ss_dssp TTEEEEEEECSSS-EEEEEECTT-SSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTE
T ss_pred CCeEEEEeecCCC-cceEEECCC-CCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCE
Confidence 4566777777754 899999999 6655 788889999999999999988888655 899999999999886554 6799
Q ss_pred EEEEEccCCCcccceeeccCcccceEEEEEccCCCEE-EEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCC
Q 018858 82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFL-ACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPW 160 (349)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 160 (349)
|++||+.+++... .+.. ...+.+++|+|+++++ ++++.++.|++||+++++.+..+. . ...+.+++|+|
T Consensus 98 v~v~d~~~~~~~~---~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~-~~~~~~~~~~~---- 167 (391)
T 1l0q_A 98 LSVIDTTSNTVAG---TVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS-V-GRSPKGIAVTP---- 167 (391)
T ss_dssp EEEEETTTTEEEE---EEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-C-CSSEEEEEECT----
T ss_pred EEEEECCCCeEEE---EEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEe-c-CCCcceEEECC----
Confidence 9999999764433 3332 3568999999999877 688889999999999999888887 4 35578999999
Q ss_pred CCCCCCCCCCccccCCceeEEeecCcccccCCCCcEE-EEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccE
Q 018858 161 EGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC-VVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIR 239 (349)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (349)
+++.+ ++++.++.|++||++++
T Consensus 168 --------------------------------dg~~l~~~~~~~~~v~~~d~~~~------------------------- 190 (391)
T 1l0q_A 168 --------------------------------DGTKVYVANFDSMSISVIDTVTN------------------------- 190 (391)
T ss_dssp --------------------------------TSSEEEEEETTTTEEEEEETTTT-------------------------
T ss_pred --------------------------------CCCEEEEEeCCCCEEEEEECCCC-------------------------
Confidence 67766 67788999999999874
Q ss_pred EEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEee---CCCeEEEEecCCCcceecccccceeeeccc
Q 018858 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG---NDKLVKVWDCSRFQGVQTSINNDLLIKNIN 316 (349)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 316 (349)
.....+. +...+.+++|+ |++++|++++ .++.|++||+.++ ..+..+..
T Consensus 191 ---------------~~~~~~~-~~~~~~~~~~~---~~g~~l~~~~~~~~~~~v~~~d~~~~---------~~~~~~~~ 242 (391)
T 1l0q_A 191 ---------------SVIDTVK-VEAAPSGIAVN---PEGTKAYVTNVDKYFNTVSMIDTGTN---------KITARIPV 242 (391)
T ss_dssp ---------------EEEEEEE-CSSEEEEEEEC---TTSSEEEEEEECSSCCEEEEEETTTT---------EEEEEEEC
T ss_pred ---------------eEEEEEe-cCCCccceEEC---CCCCEEEEEecCcCCCcEEEEECCCC---------eEEEEEec
Confidence 2222232 44578899999 8999998887 6899999999987 44444444
Q ss_pred cccceEEEEeecCCCCcE-EEeeCCCeEEEeeCC
Q 018858 317 LNKKVNWLCTTPTESENL-VVCDTSKVVKVYSIS 349 (349)
Q Consensus 317 ~~~~v~~~~~~~~~~~~l-~~~~~dg~i~iw~~~ 349 (349)
|. .+.+++|+| ++++| ++++.|+.|++||++
T Consensus 243 ~~-~~~~~~~s~-dg~~l~~s~~~d~~v~v~d~~ 274 (391)
T 1l0q_A 243 GP-DPAGIAVTP-DGKKVYVALSFXNTVSVIDTA 274 (391)
T ss_dssp CS-SEEEEEECT-TSSEEEEEETTTTEEEEEETT
T ss_pred CC-CccEEEEcc-CCCEEEEEcCCCCEEEEEECC
Confidence 43 578899988 77766 566889999999974
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-31 Score=222.70 Aligned_cols=209 Identities=10% Similarity=0.050 Sum_probs=161.4
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECC---------CCcEEEEee-cCCCCeEEEEEec--CCCE
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLR---------SKDVQLVTD-VGNGPVTSLCFKS--GNED 72 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~---------~~~~~~~~~-~~~~~v~~~~~~~--~~~~ 72 (349)
++.+..+. ...|.++.|+|. +++++.|++|++|+.. +++.+..+. .|..+|.+++|+| ++++
T Consensus 68 ~~~~~~~~--~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 141 (343)
T 3lrv_A 68 SKTITTIT--TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEY 141 (343)
T ss_dssp SSCEEEEE--EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCE
T ss_pred CcEEEEEe--cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCE
Confidence 34444444 466777788775 9999999999999665 455444444 5778999999999 9999
Q ss_pred EEEEeCCCeEEEEEccCCCcccceeec-cCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEe-ceeccc-cccce
Q 018858 73 IIYVSSGKEVKSFDVHMPASWRPLESY-NYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLY-KSLRAG-HSSIC 149 (349)
Q Consensus 73 l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~-~~~~v 149 (349)
+++++.||.|++||+++++. +... ..+...+.+++|+|++.+|++|+.||.|++||+++++.+ ..+. . |...|
T Consensus 142 l~s~s~dg~i~~wd~~~~~~---~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~-~~h~~~v 217 (343)
T 3lrv_A 142 FIWADNRGTIGFQSYEDDSQ---YIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFP-VDEEAKI 217 (343)
T ss_dssp EEEEETTCCEEEEESSSSCE---EEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECC-CCTTSCE
T ss_pred EEEEeCCCcEEEEECCCCcE---EEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEe-ccCCCCE
Confidence 99999999999999997654 2222 234557999999999999999999999999999998877 6777 6 89999
Q ss_pred eEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccc
Q 018858 150 SSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKG 229 (349)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 229 (349)
.+++|+| ++.+|++++ ++.|++||+++.+...
T Consensus 218 ~~l~fs~------------------------------------~g~~l~s~~-~~~v~iwd~~~~~~~~----------- 249 (343)
T 3lrv_A 218 KEVKFAD------------------------------------NGYWMVVEC-DQTVVCFDLRKDVGTL----------- 249 (343)
T ss_dssp EEEEECT------------------------------------TSSEEEEEE-SSBEEEEETTSSTTCB-----------
T ss_pred EEEEEeC------------------------------------CCCEEEEEe-CCeEEEEEcCCCCcce-----------
Confidence 9999999 799999999 5599999999742111
Q ss_pred eeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcce--EEEEEeeecCCccEEEEeeC-CCeEEEEecCCCc
Q 018858 230 SQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAA--SCVAFSMFGERGKYLISGGN-DKLVKVWDCSRFQ 300 (349)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i--~~i~~~~~~~~~~~l~s~~~-d~~i~vwd~~~~~ 300 (349)
.+..+..|...+ .+++|+ |++++|++++. |+.|++|++....
T Consensus 250 --------------------------~~~~~~~~~~~~~~~~~~~~---~~g~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 250 --------------------------AYPTYTIPEFKTGTVTYDID---DSGKNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp --------------------------SSCCCBC-----CCEEEEEC---TTSSEEEEEETTTTEEEEEEECTTT
T ss_pred --------------------------eecccccccccccceEEEEC---CCCCEEEEecCCCCcEEEEEEcccc
Confidence 111122233333 469999 89999999988 9999999997653
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-30 Score=213.46 Aligned_cols=240 Identities=15% Similarity=0.200 Sum_probs=187.5
Q ss_pred eeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEee--cCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccc
Q 018858 18 ATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD--VGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRP 95 (349)
Q Consensus 18 i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 95 (349)
.++|+|+++ ++|++| .|++|+|||+++++.+..+. .|...|.+++|+|++++|++|+.||.|++||+++++ .
T Consensus 28 ~~~l~WS~~--~~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~---~ 101 (318)
T 4ggc_A 28 LNLVDWSSG--NVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK---R 101 (318)
T ss_dssp CBCEEECTT--SEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE---E
T ss_pred ceEEEECCC--CEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce---e
Confidence 578999987 377776 48999999999999877665 577889999999999999999999999999999764 4
Q ss_pred eeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCc-eEeceeccccccceeEEEEccCCCCCCCCCCCCCCcccc
Q 018858 96 LESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQH-CLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCY 174 (349)
Q Consensus 96 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (349)
+..+.+|...+.++. +++..+++++.++.+++|+.... ..+..+. +|...+..+.+.+
T Consensus 102 ~~~~~~h~~~~~~~~--~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~------------------ 160 (318)
T 4ggc_A 102 LRNMTSHSARVGSLS--WNSYILSSGSRSGHIHHHDVRVAEHHVATLS-GHSQEVCGLRWAP------------------ 160 (318)
T ss_dssp EEEEECCSSCEEEEE--EETTEEEEEETTSEEEEEETTSSSCEEEEEE-CCSSCEEEEEECT------------------
T ss_pred EEEecCccceEEEee--cCCCEEEEEecCCceEeeecCCCceeEEEEc-CccCceEEEEEcC------------------
Confidence 455666777776655 45679999999999999998865 4556666 8999999999999
Q ss_pred CCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceee
Q 018858 175 NPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRL 254 (349)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (349)
++++|++++.||.|++||+++++. ..
T Consensus 161 ------------------~~~~l~s~~~d~~i~iwd~~~~~~------------------------------------~~ 186 (318)
T 4ggc_A 161 ------------------DGRHLASGGNDNLVNVWPSAPGEG------------------------------------GW 186 (318)
T ss_dssp ------------------TSSEEEEEETTSCEEEEESSCBTT------------------------------------BS
T ss_pred ------------------CCCEEEEEecCcceeEEECCCCcc------------------------------------cc
Confidence 789999999999999999986421 11
Q ss_pred eeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcE
Q 018858 255 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENL 334 (349)
Q Consensus 255 ~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 334 (349)
........|.+.|..+.++|..++.-.+++++.++.|++||..... ......+...+..+++.| +++.+
T Consensus 187 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~----------~~~~~~~~~~v~~~~~~~-~~~~~ 255 (318)
T 4ggc_A 187 VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA----------CLSAVDAHSQVCSILWSP-HYKEL 255 (318)
T ss_dssp CCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCC----------EEEEEECSSCEEEEEEET-TTTEE
T ss_pred cceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccc----------ccccccceeeeeeeeecc-cccce
Confidence 2234455677889999999422222234567789999999998852 234455777899999988 55566
Q ss_pred EEe--eCCCeEEEeeCC
Q 018858 335 VVC--DTSKVVKVYSIS 349 (349)
Q Consensus 335 ~~~--~~dg~i~iw~~~ 349 (349)
+++ +.|+.|++||++
T Consensus 256 ~~~sg~~d~~i~iwd~~ 272 (318)
T 4ggc_A 256 ISGHGFAQNQLVIWKYP 272 (318)
T ss_dssp EEEECTTTCCEEEEETT
T ss_pred EEEEEcCCCEEEEEECC
Confidence 554 379999999974
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-30 Score=213.87 Aligned_cols=238 Identities=13% Similarity=0.135 Sum_probs=179.5
Q ss_pred eeeEEEEecCCCceE-EEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCC-Cccc
Q 018858 17 TATCCIASRDRPGFV-ASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP-ASWR 94 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l-~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~ 94 (349)
.+..+++.++ ++.+ ++++.|+.|++||..+++.+..+. +..+|.+++++++ .++++. ++.|++||+.++ +...
T Consensus 60 ~~~~~~~~~~-~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~--~~~~~~-~~~i~i~d~~~~~~~~~ 134 (355)
T 3vu4_A 60 HLSKVRMLHR-TNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSRE--FIVVSY-GDVISVFKFGNPWKRIT 134 (355)
T ss_dssp CCCEEEECTT-SSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSS--EEEEEE-TTEEEEEESSTTCCBSS
T ss_pred CeEEEEEcCC-CCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCC--EEEEEE-cCEEEEEECCCCceeeE
Confidence 5777888887 5555 678888999999999999988887 6679999999875 344444 789999999876 4333
Q ss_pred ceeeccCcccceEEEEEccCCCEEEE--EcCCCcEEEEEcCCce----------------EeceeccccccceeEEEEcc
Q 018858 95 PLESYNYNKEEINQIVCNPKSSFLAC--ADDGGDVKIIDIRQHC----------------LYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 95 ~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~----------------~~~~~~~~~~~~v~~~~~~~ 156 (349)
.+.. ....+++++ .++++ |+.+|.|++||+++++ .+..+. +|...|.+++|+|
T Consensus 135 ~~~~------~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~-~h~~~v~~~~~s~ 205 (355)
T 3vu4_A 135 DDIR------FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIK-AHTNPIKMVRLNR 205 (355)
T ss_dssp CCEE------EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEEC-CCSSCEEEEEECT
T ss_pred Eecc------CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEE-ccCCceEEEEECC
Confidence 3332 334456666 56665 6889999999999765 156777 8999999999999
Q ss_pred CCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCe-EEEEEccCceeeeecCCCCCCccceeeeec
Q 018858 157 WKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGV-VDVINIESELNISRSKSTTKPLKGSQSTSK 235 (349)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (349)
++++|++|+.||+ |++||++++
T Consensus 206 ------------------------------------~g~~l~s~s~d~~~v~iwd~~~~--------------------- 228 (355)
T 3vu4_A 206 ------------------------------------KSDMVATCSQDGTIIRVFKTEDG--------------------- 228 (355)
T ss_dssp ------------------------------------TSSEEEEEETTCSEEEEEETTTC---------------------
T ss_pred ------------------------------------CCCEEEEEeCCCCEEEEEECCCC---------------------
Confidence 8999999999998 999999975
Q ss_pred cccEEEEeeeeeecCceeeeeeeeec-C-CCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccc-e--
Q 018858 236 VNIRDAEMEILDQSGGKRLHLDYSVG-G-HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINND-L-- 310 (349)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~-h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-~-- 310 (349)
+.+..+. + |...|++++|+ |++++|++++.|++|++||++.........-.. .
T Consensus 229 -------------------~~~~~~~~g~h~~~v~~~~~s---~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~ 286 (355)
T 3vu4_A 229 -------------------VLVREFRRGLDRADVVDMKWS---TDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINM 286 (355)
T ss_dssp -------------------CEEEEEECTTCCSCEEEEEEC---TTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEEC
T ss_pred -------------------cEEEEEEcCCCCCcEEEEEEC---CCCCEEEEEECCCEEEEEEccCCCCcccccccceeec
Confidence 4455666 5 89999999999 899999999999999999998753211100000 0
Q ss_pred -----------eeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 311 -----------LIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 311 -----------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.............++|++ +++.|++++.||.+++|++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-d~~~l~~~~~dg~~~~~~~ 334 (355)
T 3vu4_A 287 KYFQSEWSLCNFKLSVDKHVRGCKIAWIS-ESSLVVVWPHTRMIETFKV 334 (355)
T ss_dssp CCCCCSSCSEEEECCCCTTCCCCEEEESS-SSEEEEEETTTTEEEEEEE
T ss_pred cccccccceeEEEeccCCCCCceEEEEeC-CCCEEEEEeCCCeEEEEEE
Confidence 000111222346688977 8889999999999999985
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-30 Score=216.04 Aligned_cols=253 Identities=10% Similarity=0.035 Sum_probs=183.8
Q ss_pred EECCCCcEEEEeecCCCCeEEEEEecC---CCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEE
Q 018858 43 FDLRSKDVQLVTDVGNGPVTSLCFKSG---NEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLA 119 (349)
Q Consensus 43 wd~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 119 (349)
|+....+.+..+.+|...|.+++|+|+ +++|++++.||.|++||+++... .....+..|...|.+++|+|++++|+
T Consensus 24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~ 102 (368)
T 3mmy_A 24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ-TIPKAQQMHTGPVLDVCWSDDGSKVF 102 (368)
T ss_dssp CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC-EEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc-eeEEEeccccCCEEEEEECcCCCEEE
Confidence 455566678888999999999999999 59999999999999999986321 22245666889999999999999999
Q ss_pred EEcCCCcEEEEEcCCceEeceeccccccceeEEEE--ccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEE
Q 018858 120 CADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQF--IPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC 197 (349)
Q Consensus 120 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 197 (349)
+++.||.|++||+++++.+... .|...|.+++| +| ++++|
T Consensus 103 s~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~------------------------------------~~~~l 144 (368)
T 3mmy_A 103 TASCDKTAKMWDLSSNQAIQIA--QHDAPVKTIHWIKAP------------------------------------NYSCV 144 (368)
T ss_dssp EEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEEEECS------------------------------------SCEEE
T ss_pred EEcCCCcEEEEEcCCCCceeec--cccCceEEEEEEeCC------------------------------------CCCEE
Confidence 9999999999999999877644 58999999999 66 78899
Q ss_pred EEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeee------eeecCceeeeeeeeecCCCcceEEEE
Q 018858 198 VVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI------LDQSGGKRLHLDYSVGGHTAAASCVA 271 (349)
Q Consensus 198 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~h~~~i~~i~ 271 (349)
++++.||.|++||+++++......... .+..+.+.+ ..+++... ++..... .........+...+.++.
T Consensus 145 ~~~~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 219 (368)
T 3mmy_A 145 MTGSWDKTLKFWDTRSSNPMMVLQLPE--RCYCADVIY--PMAVVATAERGLIVYQLENQP-SEFRRIESPLKHQHRCVA 219 (368)
T ss_dssp EEEETTSEEEEECSSCSSCSEEEECSS--CEEEEEEET--TEEEEEEGGGCEEEEECSSSC-EEEEECCCSCSSCEEEEE
T ss_pred EEccCCCcEEEEECCCCcEEEEEecCC--CceEEEecC--CeeEEEeCCCcEEEEEecccc-chhhhccccccCCCceEE
Confidence 999999999999999876555444332 233333333 33332111 1111110 011111112334455666
Q ss_pred EeeecCCcc----EEEEeeCCCeEEEEecCCCcceecccccceeeecccccc------------ceEEEEeecCCCCcEE
Q 018858 272 FSMFGERGK----YLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK------------KVNWLCTTPTESENLV 335 (349)
Q Consensus 272 ~~~~~~~~~----~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~------------~v~~~~~~~~~~~~l~ 335 (349)
+. ++.. .+++++.|+.|++||++..... ..+..+..|.. .|++++|+| ++++|+
T Consensus 220 ~~---~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~ 289 (368)
T 3mmy_A 220 IF---KDKQNKPTGFALGSIEGRVAIHYINPPNPA------KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHP-VHGTLA 289 (368)
T ss_dssp EE---ECTTSCEEEEEEEETTSEEEEEESSCSCHH------HHSEEEECSEEC----CCCEEECCEEEEEECT-TTCCEE
T ss_pred Ec---ccCCCCCCeEEEecCCCcEEEEecCCCCcc------ccceeeeeeecccccccccccccceEEEEEec-CCCEEE
Confidence 65 3333 3999999999999999886321 12233344444 799999988 888999
Q ss_pred EeeCCCeEEEeeCC
Q 018858 336 VCDTSKVVKVYSIS 349 (349)
Q Consensus 336 ~~~~dg~i~iw~~~ 349 (349)
+++.||.|++||++
T Consensus 290 s~~~dg~i~iwd~~ 303 (368)
T 3mmy_A 290 TVGSDGRFSFWDKD 303 (368)
T ss_dssp EEETTSCEEEEETT
T ss_pred EEccCCeEEEEECC
Confidence 99999999999974
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.98 E-value=8e-31 Score=210.14 Aligned_cols=180 Identities=8% Similarity=0.043 Sum_probs=138.3
Q ss_pred CCCcEEEEEC-CCCcEEEEeecCCCCeEEEEEec---CCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEE
Q 018858 36 EDGCICWFDL-RSKDVQLVTDVGNGPVTSLCFKS---GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVC 111 (349)
Q Consensus 36 ~dg~i~vwd~-~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 111 (349)
.|+.|++|++ .+++.+..+..|...+..++|++ +++.|++++.|++|+|||+++++..+.+.....+...+.+++|
T Consensus 155 ~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vaf 234 (356)
T 2w18_A 155 SDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAY 234 (356)
T ss_dssp TTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEE
T ss_pred CCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEE
Confidence 4889999998 45788888888999999999998 7799999999999999999998665555432222346778899
Q ss_pred ccCCCEE------------EEEcCCCcEEEEEcCCceEeceec----cccccceeEEEEccCCCCCCCCCCCCCCccccC
Q 018858 112 NPKSSFL------------ACADDGGDVKIIDIRQHCLYKSLR----AGHSSICSSVQFIPWKPWEGLPENNGNAGQCYN 175 (349)
Q Consensus 112 ~~~~~~l------------~~~~~dg~i~i~d~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (349)
+|++.++ ++|+.|++|++||..+++.+..+. .+|...+.+..+
T Consensus 235 SpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--------------------- 293 (356)
T 2w18_A 235 SEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--------------------- 293 (356)
T ss_dssp EETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE---------------------
T ss_pred CCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc---------------------
Confidence 9999876 567889999999999998776542 144433322222
Q ss_pred CceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeee
Q 018858 176 PAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLH 255 (349)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (349)
++..+++++.|++|+|||+.++ +
T Consensus 294 -----------------sg~~lASgS~DgTIkIWDl~tG----------------------------------------k 316 (356)
T 2w18_A 294 -----------------KDHCAAAILTSGTIAIWDLLLG----------------------------------------Q 316 (356)
T ss_dssp -----------------ETTEEEEEETTSCEEEEETTTC----------------------------------------S
T ss_pred -----------------CCCEEEEEcCCCcEEEEECCCC----------------------------------------c
Confidence 4578999999999999999986 5
Q ss_pred eeeeecCCCcceE-EEEEeeecCCccEEEEeeCCCeEEEEec
Q 018858 256 LDYSVGGHTAAAS-CVAFSMFGERGKYLISGGNDKLVKVWDC 296 (349)
Q Consensus 256 ~~~~~~~h~~~i~-~i~~~~~~~~~~~l~s~~~d~~i~vwd~ 296 (349)
++.++.+|...+. .++|+ |||++|++|+.|++|+|||+
T Consensus 317 ~l~tL~gH~~~vvs~vafS---PDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 317 CTALLPPVSDQHWSFVKWS---GTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEEECCC--CCCCEEEEC---SSSSEEEEECTTSCEEEEEE
T ss_pred EEEEecCCCCCeEEEEEEC---CCCCEEEEEECCCcEEEecC
Confidence 6677888877554 68999 89999999999999999996
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=1e-30 Score=238.84 Aligned_cols=214 Identities=17% Similarity=0.246 Sum_probs=179.5
Q ss_pred EEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccC--CCEEEEEcCCCcEEE
Q 018858 52 LVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK--SSFLACADDGGDVKI 129 (349)
Q Consensus 52 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i 129 (349)
..+.+|.++|++++|+|++++|++|+.||.|++||+..+ ....+..+.+|...|++++|+|+ +++|++|+.||.|++
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~-~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE-THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETT-EEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCC-CCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 467889999999999999999999999999999999843 23556677889999999999988 899999999999999
Q ss_pred EEcCCce--EeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCC--CcEEEEEcCCCe
Q 018858 130 IDIRQHC--LYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT--NKICVVAKGDGV 205 (349)
Q Consensus 130 ~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~dg~ 205 (349)
||+++++ ....+. .|...|.+++|+| + ++++++|+.||.
T Consensus 82 wd~~~~~~~~~~~~~-~h~~~V~~v~~sp------------------------------------~~~~~~l~sgs~dg~ 124 (753)
T 3jro_A 82 WKEENGRWSQIAVHA-VHSASVNSVQWAP------------------------------------HEYGPLLLVASSDGK 124 (753)
T ss_dssp EEEETTEEEEEEEEC-CCSSCEEEEEECC------------------------------------GGGCSEEEEEETTSE
T ss_pred EECCCCccccccccc-CCCCCeEEEEECC------------------------------------CCCCCEEEEEeCCCc
Confidence 9999886 666777 8999999999999 6 899999999999
Q ss_pred EEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecC--------
Q 018858 206 VDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGE-------- 277 (349)
Q Consensus 206 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~-------- 277 (349)
|++||++.... .....+.+|...|.++.|+ |
T Consensus 125 I~vwdl~~~~~--------------------------------------~~~~~~~~~~~~v~~l~~~---p~~~~~~~~ 163 (753)
T 3jro_A 125 VSVVEFKENGT--------------------------------------TSPIIIDAHAIGVNSASWA---PATIEEDGE 163 (753)
T ss_dssp EEEEECCSSSC--------------------------------------CCCEEEECCSSCEEEEEEC---CCC------
T ss_pred EEEEEeecCCC--------------------------------------cceeEeecCCCceEEEEec---Ccccccccc
Confidence 99999986310 1223456788999999999 6
Q ss_pred -----CccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCC--CCcEEEeeCCCeEEEeeCC
Q 018858 278 -----RGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTE--SENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 278 -----~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~iw~~~ 349 (349)
+++++++|+.||.|++||+++..... .....+.+|...|++++|+|.+ +++|++++.||.|++||++
T Consensus 164 ~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~-----~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~ 237 (753)
T 3jro_A 164 HNGTKESRKFVTGGADNLVKIWKYNSDAQTY-----VLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 237 (753)
T ss_dssp ---CGGGCCEEEEETTSCEEEEEEETTTTEE-----EEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred cccCCCCCEEEEEECCCeEEEEeccCCcccc-----eeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCC
Confidence 68999999999999999998864321 3445667899999999999843 8899999999999999963
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-30 Score=218.90 Aligned_cols=228 Identities=12% Similarity=0.058 Sum_probs=157.5
Q ss_pred CeeeeCCceeeeEEEEec--------CCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCC-EEEEEeC
Q 018858 8 PRRLRGHKATATCCIASR--------DRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNE-DIIYVSS 78 (349)
Q Consensus 8 ~~~l~~h~~~i~~~~~~~--------~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~ 78 (349)
+..+.+|.+.|++++|+| + +++|++++.|++|+|||+.++..+..+..|..+|.+++|+|++. +|++++.
T Consensus 129 ~~~~~gH~~~v~~v~~~p~~~~~~~~d-~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~ 207 (393)
T 4gq1_A 129 LGGKSGHHNFVNDIDIADVYSADNRLA-EQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGER 207 (393)
T ss_dssp ECTTTSCSSCEEEEEEEEEECTTCSEE-EEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEET
T ss_pred ecccCCCCCceEEEEEccccccccCCC-CCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCC
Confidence 345789999999999998 5 78999999999999999998888888888999999999999875 7999999
Q ss_pred CCeEEEEEccCCCccccee----------------------eccCcccceEEEEEc-cCCCEEEEEcCCCcEEEEEcCCc
Q 018858 79 GKEVKSFDVHMPASWRPLE----------------------SYNYNKEEINQIVCN-PKSSFLACADDGGDVKIIDIRQH 135 (349)
Q Consensus 79 dg~i~iwd~~~~~~~~~~~----------------------~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~ 135 (349)
|+.|++||+++++...... ...+|...+.++.|. |+++.+++++.|+.+++||+..+
T Consensus 208 d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~ 287 (393)
T 4gq1_A 208 NGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFAN 287 (393)
T ss_dssp TSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---
T ss_pred CCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccC
Confidence 9999999998764322111 123466778889986 79999999999999999999988
Q ss_pred eEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCce
Q 018858 136 CLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL 215 (349)
Q Consensus 136 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 215 (349)
+....+. .+...+..+.+.|+...... ........+.+ ..++.++++|+.||.|++||+.++
T Consensus 288 ~~~~~l~-~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~----~~~~~~~~sgs~Dg~V~lwd~~~~- 349 (393)
T 4gq1_A 288 NDYNEIS-DSTMKLGPKNLLPNVQGISL------------FPSLLGACPHP----RYMDYFATAHSQHGLIQLINTYEK- 349 (393)
T ss_dssp -----------------CCSCSEEEECS------------SCCSSCCEECS----SCTTEEEEEETTTTEEEEEETTCT-
T ss_pred CCCceEe-eecCccccEEEccccccccc------------cCcceeEEEcc----CCCCEEEEEECCCCEEEEEECCCC-
Confidence 8777777 77777777777774211100 00011111111 114556778889999999999875
Q ss_pred eeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEe
Q 018858 216 NISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD 295 (349)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd 295 (349)
.....+.+|..+|++++|+ |+|++||+++.|| +.+|.
T Consensus 350 ---------------------------------------~~~~~~~~~~~~V~svafs---pdG~~LA~as~~G-v~lvr 386 (393)
T 4gq1_A 350 ---------------------------------------DSNSIPIQLGMPIVDFCWH---QDGSHLAIATEGS-VLLTR 386 (393)
T ss_dssp ---------------------------------------TCCEEEEECSSCEEEEEEC---TTSSEEEEEESSE-EEEEE
T ss_pred ---------------------------------------cEEEEecCCCCcEEEEEEc---CCCCEEEEEeCCC-eEEEE
Confidence 3334455678899999999 9999999999766 55665
Q ss_pred cC
Q 018858 296 CS 297 (349)
Q Consensus 296 ~~ 297 (349)
+.
T Consensus 387 L~ 388 (393)
T 4gq1_A 387 LM 388 (393)
T ss_dssp EG
T ss_pred Ee
Confidence 54
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=8.5e-28 Score=203.80 Aligned_cols=224 Identities=13% Similarity=0.169 Sum_probs=178.8
Q ss_pred CceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEE-EEEeCCCeEEEEEccCCCcccceeeccCcccce
Q 018858 28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDI-IYVSSGKEVKSFDVHMPASWRPLESYNYNKEEI 106 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v 106 (349)
+.++++++.|+.|++||+.+++.+..+..|. .+.+++|+|+++++ ++++.++.|++||+.+++.. ..+..+ ..+
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~---~~~~~~-~~v 76 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVI---ATVPAG-SSP 76 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEE---EEEECS-SSE
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEE---EEEECC-CCc
Confidence 3578899999999999999999988888665 58999999999987 56678999999999876443 333323 489
Q ss_pred EEEEEccCCCEEE-EEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecC
Q 018858 107 NQIVCNPKSSFLA-CADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIP 185 (349)
Q Consensus 107 ~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (349)
.+++|+|++++++ +++.++.|++||+.+++.+..+. +...+.+++|+|
T Consensus 77 ~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~--~~~~~~~~~~s~----------------------------- 125 (391)
T 1l0q_A 77 QGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK--TGKSPLGLALSP----------------------------- 125 (391)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECT-----------------------------
T ss_pred cceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe--CCCCcceEEECC-----------------------------
Confidence 9999999998775 55567999999999999888877 445689999999
Q ss_pred cccccCCCCcEE-EEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCC
Q 018858 186 DADMLDKTNKIC-VVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHT 264 (349)
Q Consensus 186 ~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 264 (349)
+++.+ ++++.++.|++||++++ +....+..+
T Consensus 126 -------dg~~l~~~~~~~~~v~~~d~~~~----------------------------------------~~~~~~~~~- 157 (391)
T 1l0q_A 126 -------DGKKLYVTNNGDKTVSVINTVTK----------------------------------------AVINTVSVG- 157 (391)
T ss_dssp -------TSSEEEEEETTTTEEEEEETTTT----------------------------------------EEEEEEECC-
T ss_pred -------CCCEEEEEeCCCCEEEEEECCCC----------------------------------------cEEEEEecC-
Confidence 67766 68888999999999875 233344434
Q ss_pred cceEEEEEeeecCCccEE-EEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEee---CC
Q 018858 265 AAASCVAFSMFGERGKYL-ISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD---TS 340 (349)
Q Consensus 265 ~~i~~i~~~~~~~~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~d 340 (349)
..+..+.|+ |+++++ ++++.|+.|++||+.++ ..... ..+...+.+++|+| ++++|++++ .+
T Consensus 158 ~~~~~~~~~---~dg~~l~~~~~~~~~v~~~d~~~~---------~~~~~-~~~~~~~~~~~~~~-~g~~l~~~~~~~~~ 223 (391)
T 1l0q_A 158 RSPKGIAVT---PDGTKVYVANFDSMSISVIDTVTN---------SVIDT-VKVEAAPSGIAVNP-EGTKAYVTNVDKYF 223 (391)
T ss_dssp SSEEEEEEC---TTSSEEEEEETTTTEEEEEETTTT---------EEEEE-EECSSEEEEEEECT-TSSEEEEEEECSSC
T ss_pred CCcceEEEC---CCCCEEEEEeCCCCEEEEEECCCC---------eEEEE-EecCCCccceEECC-CCCEEEEEecCcCC
Confidence 346899999 899877 67788999999999986 33322 33566889999988 788888887 78
Q ss_pred CeEEEeeCC
Q 018858 341 KVVKVYSIS 349 (349)
Q Consensus 341 g~i~iw~~~ 349 (349)
+.|++||+.
T Consensus 224 ~~v~~~d~~ 232 (391)
T 1l0q_A 224 NTVSMIDTG 232 (391)
T ss_dssp CEEEEEETT
T ss_pred CcEEEEECC
Confidence 999999974
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-27 Score=204.23 Aligned_cols=280 Identities=11% Similarity=0.060 Sum_probs=203.8
Q ss_pred CceeeeEEE---EecCCCceEEE--------------eCCCCcEEEEEC--CCC--cEEEEeecCCCCeEEEEEecCCCE
Q 018858 14 HKATATCCI---ASRDRPGFVAS--------------SGEDGCICWFDL--RSK--DVQLVTDVGNGPVTSLCFKSGNED 72 (349)
Q Consensus 14 h~~~i~~~~---~~~~~~~~l~t--------------~~~dg~i~vwd~--~~~--~~~~~~~~~~~~v~~~~~~~~~~~ 72 (349)
....+..++ |+|+ ++.++. ++.++.+.+|.+ .++ +.+..+..+. .+.+++|+|++.+
T Consensus 59 ~~~g~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~ 136 (433)
T 3bws_A 59 KNIALVEMAIPVYKDE-KEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGF-QPKSVRFIDNTRL 136 (433)
T ss_dssp TTEEEEEEEEECCCTT-CCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECSS-CBCCCEESSSSEE
T ss_pred cCCccEEEEEeeccCC-CcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCCC-CceEEEEeCCCeE
Confidence 345677778 8887 444432 233443455544 334 4455666544 4568999997777
Q ss_pred EEEEeCCCeEEEEEccCCCccccee--eccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceecccccccee
Q 018858 73 IIYVSSGKEVKSFDVHMPASWRPLE--SYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICS 150 (349)
Q Consensus 73 l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~ 150 (349)
+++++.++.|++||+.+++....+. .+..|...+.+++|+|++.++++++.|+.|++||+++++.+..+. .+...+.
T Consensus 137 ~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~-~~~~~~~ 215 (433)
T 3bws_A 137 AIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVD-LTGKWSK 215 (433)
T ss_dssp EEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEE-CSSSSEE
T ss_pred EEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEc-CCCCCee
Confidence 7778888999999999875443222 345677889999999999999999999999999999999888888 7888999
Q ss_pred EEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEE-EEEcCCCeEEEEEccCceeeeecCCCCCCccc
Q 018858 151 SVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC-VVAKGDGVVDVINIESELNISRSKSTTKPLKG 229 (349)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 229 (349)
+++|+| +++.+ ++++.++.|++||+++++....... ...+.
T Consensus 216 ~~~~~~------------------------------------~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~~ 257 (433)
T 3bws_A 216 ILLYDP------------------------------------IRDLVYCSNWISEDISVIDRKTKLEIRKTDK--IGLPR 257 (433)
T ss_dssp EEEEET------------------------------------TTTEEEEEETTTTEEEEEETTTTEEEEECCC--CSEEE
T ss_pred EEEEcC------------------------------------CCCEEEEEecCCCcEEEEECCCCcEEEEecC--CCCce
Confidence 999999 67766 5556899999999998877665544 34578
Q ss_pred eeeeeccccEEEEeeeeee-------c----CceeeeeeeeecCCCcceEEEEEeeecCCccE-EEEeeCCCeEEEEecC
Q 018858 230 SQSTSKVNIRDAEMEILDQ-------S----GGKRLHLDYSVGGHTAAASCVAFSMFGERGKY-LISGGNDKLVKVWDCS 297 (349)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~-------~----~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~-l~s~~~d~~i~vwd~~ 297 (349)
.++|+|+++.+++...... . .....+....+ .|...+.+++|+ |++++ +++++.|+.|++||+.
T Consensus 258 ~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~---~~g~~l~~~~~~~~~v~v~d~~ 333 (433)
T 3bws_A 258 GLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSG---NTENKIYVSDMCCSKIEVYDLK 333 (433)
T ss_dssp EEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEEC---SSTTEEEEEETTTTEEEEEETT
T ss_pred EEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEEC---CCCCEEEEEecCCCEEEEEECC
Confidence 9999999998886553211 1 11111222222 355678899999 88865 5667899999999999
Q ss_pred CCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeC---------------CCeEEEeeCC
Q 018858 298 RFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDT---------------SKVVKVYSIS 349 (349)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---------------dg~i~iw~~~ 349 (349)
++ ..+... .+...+.+++|+| ++++|++++. ||.|++||+.
T Consensus 334 ~~---------~~~~~~-~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~ 389 (433)
T 3bws_A 334 EK---------KVQKSI-PVFDKPNTIALSP-DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTT 389 (433)
T ss_dssp TT---------EEEEEE-ECSSSEEEEEECT-TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETT
T ss_pred CC---------cEEEEe-cCCCCCCeEEEcC-CCCEEEEEecCCCccccccccccccceEEEEEECC
Confidence 86 333333 4677899999988 7888888875 5799999973
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.4e-28 Score=206.48 Aligned_cols=276 Identities=11% Similarity=-0.007 Sum_probs=203.3
Q ss_pred ceeeeEEEEecCCCceEEEeC----CCC----cEEEEEC--CCCcEE--EEeecCCCCeEEEEEec--------------
Q 018858 15 KATATCCIASRDRPGFVASSG----EDG----CICWFDL--RSKDVQ--LVTDVGNGPVTSLCFKS-------------- 68 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~----~dg----~i~vwd~--~~~~~~--~~~~~~~~~v~~~~~~~-------------- 68 (349)
...+....|.+.+.+++++|+ .+| .+++||+ .+++.+ ..+.+|...+..+++++
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~ 141 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGA 141 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence 346777788888667787876 467 8999999 888876 45788888887777664
Q ss_pred CCCEEEEEeCC------CeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCC---cEEEEEcCCceEec
Q 018858 69 GNEDIIYVSSG------KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGG---DVKIIDIRQHCLYK 139 (349)
Q Consensus 69 ~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~ 139 (349)
.+..++.++.+ +.|++||+... .. ..+..|...+.+++|+|++++|++++.++ .|++||+++++..
T Consensus 142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g~-~~---~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~- 216 (415)
T 2hqs_A 142 FRTRIAYVVQTNGGQFPYELRVSDYDGY-NQ---FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR- 216 (415)
T ss_dssp TTCEEEEEEECSSSSCCEEEEEEETTSC-SC---EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-
T ss_pred CCCEEEEEEecCCCCccceEEEEcCCCC-CC---EEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-
Confidence 15667766654 79999999743 22 33444678899999999999999998875 8999999988775
Q ss_pred eeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEE-EEcCCC--eEEEEEccCcee
Q 018858 140 SLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV-VAKGDG--VVDVINIESELN 216 (349)
Q Consensus 140 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg--~i~i~d~~~~~~ 216 (349)
.+. .+...+.+++|+| +++.|+ +++.++ .|++||+++++.
T Consensus 217 ~l~-~~~~~~~~~~~sp------------------------------------dg~~la~~~~~~g~~~i~~~d~~~~~~ 259 (415)
T 2hqs_A 217 QVA-SFPRHNGAPAFSP------------------------------------DGSKLAFALSKTGSLNLYVMDLASGQI 259 (415)
T ss_dssp EEE-CCSSCEEEEEECT------------------------------------TSSEEEEEECTTSSCEEEEEETTTCCE
T ss_pred Eee-cCCCcccCEEEcC------------------------------------CCCEEEEEEecCCCceEEEEECCCCCE
Confidence 444 5777899999999 788777 666555 499999988765
Q ss_pred eeecCCCCCCccceeeeeccccEEEEeeeeeecCc----e-eeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCC---
Q 018858 217 ISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG----K-RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND--- 288 (349)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d--- 288 (349)
..... ....+..++|+|||+.+++....+.... . .......+..|...+.+++|+ |+|++|++++.+
T Consensus 260 ~~l~~--~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s---pdG~~l~~~~~~~g~ 334 (415)
T 2hqs_A 260 RQVTD--GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVS---SDGKFMVMVSSNGGQ 334 (415)
T ss_dssp EECCC--CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEEC---TTSSEEEEEEECSSC
T ss_pred EeCcC--CCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEEC---CCCCEEEEEECcCCc
Confidence 43322 2356788999999999986543222110 0 011123344566788899999 899999988764
Q ss_pred CeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCC---eEEEeeCC
Q 018858 289 KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSK---VVKVYSIS 349 (349)
Q Consensus 289 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~iw~~~ 349 (349)
..|++||+.++ .. ..+..+. .+.+++|+| ++++|++++.|+ .|++||+.
T Consensus 335 ~~i~~~d~~~~---------~~-~~l~~~~-~~~~~~~sp-dg~~l~~~s~~~~~~~l~~~d~~ 386 (415)
T 2hqs_A 335 QHIAKQDLATG---------GV-QVLSSTF-LDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTD 386 (415)
T ss_dssp EEEEEEETTTC---------CE-EECCCSS-SCEEEEECT-TSSEEEEEEEETTEEEEEEEETT
T ss_pred eEEEEEECCCC---------CE-EEecCCC-CcCCeEEcC-CCCEEEEEEcCCCccEEEEEECC
Confidence 68999999986 33 2334443 889999988 888888888776 79999863
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.2e-27 Score=204.22 Aligned_cols=279 Identities=13% Similarity=0.090 Sum_probs=203.2
Q ss_pred EEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEc--cCCCcccceeec
Q 018858 22 IASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDV--HMPASWRPLESY 99 (349)
Q Consensus 22 ~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~ 99 (349)
+++|+ +.++++++.|++|.+||..+++++.++..+.. +..++|+|++++|++++.|+.|.+||+ .+++. +..+
T Consensus 144 ~~~p~-~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~---~~~i 218 (543)
T 1nir_A 144 DLDLP-NLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK---VAEI 218 (543)
T ss_dssp CCCGG-GEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE---EEEE
T ss_pred ccCCC-CEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcE---EEEE
Confidence 48887 78899999999999999999999999884433 889999999999999999999999999 65533 3344
Q ss_pred cCcccceEEEEEcc----CCCEEEEEcC-CCcEEEEEcCCceEeceecccc-----------ccceeEEEEccCCCCCCC
Q 018858 100 NYNKEEINQIVCNP----KSSFLACADD-GGDVKIIDIRQHCLYKSLRAGH-----------SSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 100 ~~~~~~v~~~~~~~----~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~~~~ 163 (349)
. +...+..++|+| +++++++++. ++.|.+||..+++++..+. .+ ...+..+.++|+
T Consensus 219 ~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~-~~g~~~~~~~~~~~~~v~~i~~s~~------ 290 (543)
T 1nir_A 219 K-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVS-TRGMTVDTQTYHPEPRVAAIIASHE------ 290 (543)
T ss_dssp E-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEE-CCEECSSSCCEESCCCEEEEEECSS------
T ss_pred e-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeec-ccCcccCccccccCCceEEEEECCC------
Confidence 3 235689999999 9999998884 8999999999999888776 32 125667777773
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
...++++...++.|.+||+.+...+.............++|+|+|+++++.
T Consensus 291 -----------------------------~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va 341 (543)
T 1nir_A 291 -----------------------------HPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTA 341 (543)
T ss_dssp -----------------------------SSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEE
T ss_pred -----------------------------CCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEE
Confidence 345667777899999999987543331111234567789999999988754
Q ss_pred eeeeec----CceeeeeeeeecC----CCcceEEEEEeeecCC-ccEEEEee-CCCeEEEEecCCCcceecccccceeee
Q 018858 244 EILDQS----GGKRLHLDYSVGG----HTAAASCVAFSMFGER-GKYLISGG-NDKLVKVWDCSRFQGVQTSINNDLLIK 313 (349)
Q Consensus 244 ~~~~~~----~~~~~~~~~~~~~----h~~~i~~i~~~~~~~~-~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~ 313 (349)
...+.. .....++...+.. |.+....+ ++ |+ +.+++++. .|++|.+||+.+.... ....+.+..
T Consensus 342 ~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~---p~~g~~~~s~~~~d~~V~v~d~~~~~~~--~~~~~~v~~ 415 (543)
T 1nir_A 342 ANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VH---PKYGPVWSTSHLGDGSISLIGTDPKNHP--QYAWKKVAE 415 (543)
T ss_dssp EGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EE---TTTEEEEEEEBSSSSEEEEEECCTTTCT--TTBTSEEEE
T ss_pred ecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CC---CCCccEEEeccCCCceEEEEEeCCCCCc--hhcCeEEEE
Confidence 432221 1112234444432 54433333 45 66 66777775 6899999999872100 000166777
Q ss_pred ccccccceEEEEeecCCCCcEEEee-------CCCeEEEeeCC
Q 018858 314 NINLNKKVNWLCTTPTESENLVVCD-------TSKVVKVYSIS 349 (349)
Q Consensus 314 ~~~~~~~v~~~~~~~~~~~~l~~~~-------~dg~i~iw~~~ 349 (349)
+..|...+..++++| ++++|++++ .+++|.+||+.
T Consensus 416 l~~~g~~~~~v~~~p-dg~~l~v~~~~~~~~~~~~~v~v~d~~ 457 (543)
T 1nir_A 416 LQGQGGGSLFIKTHP-KSSHLYVDTTFNPDARISQSVAVFDLK 457 (543)
T ss_dssp EECSCSCCCCEECCT-TCCEEEECCTTCSSHHHHTCEEEEETT
T ss_pred EEcCCCCceEEEcCC-CCCcEEEecCCCCCcccCceEEEEECC
Confidence 888888889999988 888999987 27899999974
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.3e-26 Score=198.92 Aligned_cols=295 Identities=11% Similarity=0.054 Sum_probs=213.2
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEEC--CCCcEEEEeecCCCCeEEEEEec----CCCEEEEEe
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDL--RSKDVQLVTDVGNGPVTSLCFKS----GNEDIIYVS 77 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~--~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~ 77 (349)
+++.++++..+.. +.+++|+|+ +++|++++.|+.|.+||+ .+++.+.++. +...+..++|+| +|+++++++
T Consensus 168 t~~~~~~i~~g~~-~~~v~~spd-g~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~ 244 (543)
T 1nir_A 168 SKKIVKVIDTGYA-VHISRMSAS-GRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGA 244 (543)
T ss_dssp TCCEEEEEECSTT-EEEEEECTT-SCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEE
T ss_pred CceEEEEEecCcc-cceEEECCC-CCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEE
Confidence 5667788884333 889999998 899999999999999999 7888888888 455689999999 999999988
Q ss_pred C-CCeEEEEEccCCCcccceeecc-------Cc-ccceEEEEEccCCC-EEEEEcCCCcEEEEEcCCceEec--eecccc
Q 018858 78 S-GKEVKSFDVHMPASWRPLESYN-------YN-KEEINQIVCNPKSS-FLACADDGGDVKIIDIRQHCLYK--SLRAGH 145 (349)
Q Consensus 78 ~-dg~i~iwd~~~~~~~~~~~~~~-------~~-~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~ 145 (349)
. +++|.+||..+++....+.... .| ...+..+.++|++. ++++...++.|.+||+.+.+.+. .+. +
T Consensus 245 ~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~--~ 322 (543)
T 1nir_A 245 YWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG--A 322 (543)
T ss_dssp EESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE--C
T ss_pred ccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec--c
Confidence 5 8999999998876555443311 01 23688999999764 55677789999999998765443 333 4
Q ss_pred ccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEE-cCCCeEEEEEccCceeeeecCCCC
Q 018858 146 SSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA-KGDGVVDVINIESELNISRSKSTT 224 (349)
Q Consensus 146 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~ 224 (349)
...+..+.|+| ++++|+++ ..+++|.+||..+++.........
T Consensus 323 ~~~~~~~~~sp------------------------------------dg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~ 366 (543)
T 1nir_A 323 APFLHDGGWDS------------------------------------SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK 366 (543)
T ss_dssp CSSCCCEEECT------------------------------------TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred CcCccCceECC------------------------------------CCCEEEEEecCCCeEEEEECCCCeEEEeeccCC
Confidence 55678889998 78876654 568999999999988776554321
Q ss_pred C-Cccceee-eecc-ccEEEEeeeeeec----Ccee-------eeeeeeecCCCcceEEEEEeeecCCccEEEEee----
Q 018858 225 K-PLKGSQS-TSKV-NIRDAEMEILDQS----GGKR-------LHLDYSVGGHTAAASCVAFSMFGERGKYLISGG---- 286 (349)
Q Consensus 225 ~-~~~~~~~-~~~~-~~~~~~~~~~~~~----~~~~-------~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~---- 286 (349)
. ..-+... ++|+ +..+++....+.. .... ++.+.++.+|...+..+.++ |++++|++++
T Consensus 367 ~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~---pdg~~l~v~~~~~~ 443 (543)
T 1nir_A 367 TPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTH---PKSSHLYVDTTFNP 443 (543)
T ss_dssp SBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECC---TTCCEEEECCTTCS
T ss_pred CCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcC---CCCCcEEEecCCCC
Confidence 1 1112222 4677 5544432211111 1112 67778888888888889999 9999999987
Q ss_pred ---CCCeEEEEecCCCcceecccccceee-----eccccccceEEEEeecCCCCcEEEee-----CCCeEEEeeC
Q 018858 287 ---NDKLVKVWDCSRFQGVQTSINNDLLI-----KNINLNKKVNWLCTTPTESENLVVCD-----TSKVVKVYSI 348 (349)
Q Consensus 287 ---~d~~i~vwd~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~l~~~~-----~dg~i~iw~~ 348 (349)
.+++|.|||+.+.+... ..+. .+..+...+..++|+| +|+.|+++. .|+.|.|||.
T Consensus 444 ~~~~~~~v~v~d~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~-~g~~~~~s~~~~~~~~~~i~v~D~ 512 (543)
T 1nir_A 444 DARISQSVAVFDLKNLDAKY-----QVLPIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNGKNDSSALVVVDD 512 (543)
T ss_dssp SHHHHTCEEEEETTCTTSCC-----EEECHHHHHCCCSSCCEEEEEEECS-SSSEEEEEEECCTTSCCEEEEEET
T ss_pred CcccCceEEEEECCCCCCCe-----EEeechhhcccCCCCCceEeccCCC-CCCEEEEEeecCCCCCCeEEEEEC
Confidence 26799999999985321 0100 0134577899999988 787777652 4799999995
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.4e-26 Score=194.15 Aligned_cols=226 Identities=10% Similarity=0.062 Sum_probs=180.4
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCC---cEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEE-EEeCCC
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDG---CICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDII-YVSSGK 80 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg---~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg 80 (349)
+..++.+.+|...|.+++|+|+ +++|++++.++ .|++||+.+++.. .+..|...+.+++|+|+|++|+ +++.++
T Consensus 168 g~~~~~l~~~~~~v~~~~~Spd-g~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g 245 (415)
T 2hqs_A 168 GYNQFVVHRSPQPLMSPAWSPD-GSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTG 245 (415)
T ss_dssp SCSCEEEEEESSCEEEEEECTT-SSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTS
T ss_pred CCCCEEEeCCCCcceeeEEcCC-CCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCC
Confidence 4567889999999999999998 88999888775 9999999988865 4666888999999999999888 566555
Q ss_pred --eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcC-CC--cEEEEEcCCceEeceeccccccceeEEEEc
Q 018858 81 --EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-GG--DVKIIDIRQHCLYKSLRAGHSSICSSVQFI 155 (349)
Q Consensus 81 --~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 155 (349)
.|++||+++++. ..+..+...+.+++|+|++++|++++. ++ .|++||+.+++.. .+. .+...+.+++|+
T Consensus 246 ~~~i~~~d~~~~~~----~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~-~~~~~~~~~~~s 319 (415)
T 2hqs_A 246 SLNLYVMDLASGQI----RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RIT-WEGSQNQDADVS 319 (415)
T ss_dssp SCEEEEEETTTCCE----EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECC-CSSSEEEEEEEC
T ss_pred CceEEEEECCCCCE----EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEe-cCCCcccCeEEC
Confidence 599999987542 334456678999999999999988775 44 6888898877643 344 456678899999
Q ss_pred cCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCC---CeEEEEEccCceeeeecCCCCCCccceee
Q 018858 156 PWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD---GVVDVINIESELNISRSKSTTKPLKGSQS 232 (349)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 232 (349)
| ++++|++++.+ ..|.+||+.+++
T Consensus 320 p------------------------------------dG~~l~~~~~~~g~~~i~~~d~~~~~----------------- 346 (415)
T 2hqs_A 320 S------------------------------------DGKFMVMVSSNGGQQHIAKQDLATGG----------------- 346 (415)
T ss_dssp T------------------------------------TSSEEEEEEECSSCEEEEEEETTTCC-----------------
T ss_pred C------------------------------------CCCEEEEEECcCCceEEEEEECCCCC-----------------
Confidence 9 78888887754 589999998742
Q ss_pred eeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCC---eEEEEecCCCcceecccccc
Q 018858 233 TSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDK---LVKVWDCSRFQGVQTSINND 309 (349)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~---~i~vwd~~~~~~~~~~~~~~ 309 (349)
. ..+..|. .+.+++|+ |+|++|++++.|+ .|++||+.. .
T Consensus 347 -----------------------~-~~l~~~~-~~~~~~~s---pdg~~l~~~s~~~~~~~l~~~d~~g----------~ 388 (415)
T 2hqs_A 347 -----------------------V-QVLSSTF-LDETPSLA---PNGTMVIYSSSQGMGSVLNLVSTDG----------R 388 (415)
T ss_dssp -----------------------E-EECCCSS-SCEEEEEC---TTSSEEEEEEEETTEEEEEEEETTS----------C
T ss_pred -----------------------E-EEecCCC-CcCCeEEc---CCCCEEEEEEcCCCccEEEEEECCC----------C
Confidence 1 2344443 78899999 8999999988776 799999986 4
Q ss_pred eeeeccccccceEEEEeecC
Q 018858 310 LLIKNINLNKKVNWLCTTPT 329 (349)
Q Consensus 310 ~~~~~~~~~~~v~~~~~~~~ 329 (349)
....+..|.+.|.+++|+|.
T Consensus 389 ~~~~l~~~~~~v~~~~~~~~ 408 (415)
T 2hqs_A 389 FKARLPATDGQVKFPAWSPY 408 (415)
T ss_dssp CEEECCCSSSEEEEEEECCC
T ss_pred cEEEeeCCCCCCcCCccccc
Confidence 55677889999999999883
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.6e-26 Score=207.33 Aligned_cols=279 Identities=10% Similarity=0.061 Sum_probs=196.6
Q ss_pred ceeeeEEEEecCCCceEEEeCC-CC-----cEEEEECCCCcEEEEeecCCC------------------------CeEEE
Q 018858 15 KATATCCIASRDRPGFVASSGE-DG-----CICWFDLRSKDVQLVTDVGNG------------------------PVTSL 64 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~-dg-----~i~vwd~~~~~~~~~~~~~~~------------------------~v~~~ 64 (349)
...|.+++|+|+ |++|++++. |+ .|++||+.+++....+..+.. .+..+
T Consensus 36 ~~~~~~~~~Spd-G~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPD-GSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTT-SSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecC-CCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 456899999999 899998887 88 899999999987766655432 37889
Q ss_pred EEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccc
Q 018858 65 CFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAG 144 (349)
Q Consensus 65 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 144 (349)
+|+|+|++|++++. +.|++||+.++.. .....+..+...+..++|+|+|++|++++. +.|++||+.+++...... .
T Consensus 115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~-~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~-~ 190 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG-GELYLYDLKQEGK-AAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTA-D 190 (741)
T ss_dssp EECTTSSEEEEEET-TEEEEEESSSCST-TSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCC-C
T ss_pred EECCCCCEEEEEeC-CcEEEEECCCCCc-ceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEecc-C
Confidence 99999999999986 9999999987620 012233445677999999999999998875 589999999887655443 2
Q ss_pred cccc----------------eeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCC----
Q 018858 145 HSSI----------------CSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG---- 204 (349)
Q Consensus 145 ~~~~----------------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---- 204 (349)
+... +..++|+| +++.|++++.|+
T Consensus 191 ~~~~~~~g~~~~v~~~~~~~~~~~~~Sp------------------------------------Dg~~l~~~~~d~~~~~ 234 (741)
T 2ecf_A 191 GSTTIGNGIAEFVADEEMDRHTGYWWAP------------------------------------DDSAIAYARIDESPVP 234 (741)
T ss_dssp CCSSEEESCCCHHHHHHSCCCCSEEECT------------------------------------TSSCEEEEEEECTTSC
T ss_pred CccceeccccceeeeeccccccceEECC------------------------------------CCCEEEEEEEcCCCCc
Confidence 2221 46788888 677777665544
Q ss_pred -----------------------------eEEEEEccC-ceeeeecCC-CCCCccceeeeeccccEEEEeeeeee----c
Q 018858 205 -----------------------------VVDVINIES-ELNISRSKS-TTKPLKGSQSTSKVNIRDAEMEILDQ----S 249 (349)
Q Consensus 205 -----------------------------~i~i~d~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 249 (349)
.|.+||+.+ ++....... .....+..++| |||+.+++...... .
T Consensus 235 ~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~ 313 (741)
T 2ecf_A 235 VQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLD 313 (741)
T ss_dssp EEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEE
T ss_pred eEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEE
Confidence 788899987 665443322 34556788999 99999986443111 1
Q ss_pred C----ceeeeeeeeecCCCc----ceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccce
Q 018858 250 G----GKRLHLDYSVGGHTA----AASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKV 321 (349)
Q Consensus 250 ~----~~~~~~~~~~~~h~~----~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v 321 (349)
+ .........+..+.. .+..+.|+ |||+++++++.|+.++||.++... . ...+..+...+
T Consensus 314 i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s---pdg~~~~~~~~~g~~~l~~~~~~~--------~-~~~l~~~~~~v 381 (741)
T 2ecf_A 314 LVEVTLASNQQRVLAHETSPTWVPLHNSLRFL---DDGSILWSSERTGFQHLYRIDSKG--------K-AAALTHGNWSV 381 (741)
T ss_dssp EEEEETTTCCEEEEEEEECSSCCCCCSCCEEC---TTSCEEEEECTTSSCEEEEECSSS--------C-EEESCCSSSCE
T ss_pred EEEEECCCCceEEEEEcCCCCcCCcCCceEEC---CCCeEEEEecCCCccEEEEEcCCC--------C-eeeeeecceEE
Confidence 0 001122222222222 34678899 899999999999988888776321 4 44556677778
Q ss_pred EEE-EeecCCCCcEEE-eeCCC--eEEEeeC
Q 018858 322 NWL-CTTPTESENLVV-CDTSK--VVKVYSI 348 (349)
Q Consensus 322 ~~~-~~~~~~~~~l~~-~~~dg--~i~iw~~ 348 (349)
..+ .|+| +++.|+. ++.++ .++||++
T Consensus 382 ~~~~~~s~-dg~~l~~~~~~~~~~~~~l~~~ 411 (741)
T 2ecf_A 382 DELLAVDE-KAGLAYFRAGIESARESQIYAV 411 (741)
T ss_dssp EEEEEEET-TTTEEEEEECSSCTTCBEEEEE
T ss_pred EeEeEEeC-CCCEEEEEEeCCCCceEEEEEE
Confidence 887 4877 7776654 45555 8999975
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-24 Score=179.65 Aligned_cols=279 Identities=9% Similarity=0.035 Sum_probs=186.5
Q ss_pred EEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeC-CCeEEEEEccCCCcccceeecc
Q 018858 22 IASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS-GKEVKSFDVHMPASWRPLESYN 100 (349)
Q Consensus 22 ~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~ 100 (349)
.|.++.+..+++.+.++.|.+||..+++....+..+...+ .++|+|+++++++++. ++.|.+||+.+++.. ...+.
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~--~~~~~ 80 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK--VVAIQ 80 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE--EEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee--EEecc
Confidence 4556545668888889999999999999988887777777 9999999997777665 889999999876541 22233
Q ss_pred CcccceEEEEEccCCCEEEEEcCCC---cEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCc
Q 018858 101 YNKEEINQIVCNPKSSFLACADDGG---DVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPA 177 (349)
Q Consensus 101 ~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (349)
.+.....+++|+|++++++++..++ .|++||+.+++.+..+. ......+++|+|
T Consensus 81 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~sp--------------------- 137 (331)
T 3u4y_A 81 EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP--IPYDAVGIAISP--------------------- 137 (331)
T ss_dssp ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE--CCTTEEEEEECT---------------------
T ss_pred cCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEE--CCCCccceEECC---------------------
Confidence 3334444499999999999665553 89999999998888776 344568999999
Q ss_pred eeEEeecCcccccCCCCcEEE-EEcCCCe-EEEEEccCceeeee---cCCCCCCccceeeeeccccEEEEeeeeeecC--
Q 018858 178 FVHAIAIPDADMLDKTNKICV-VAKGDGV-VDVINIESELNISR---SKSTTKPLKGSQSTSKVNIRDAEMEILDQSG-- 250 (349)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~-~~~~dg~-i~i~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 250 (349)
++++++ +...++. |.+|++........ ...........++|+|+|+++++....+..+
T Consensus 138 ---------------dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v 202 (331)
T 3u4y_A 138 ---------------NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGI 202 (331)
T ss_dssp ---------------TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred ---------------CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEE
Confidence 676454 4456678 99999875322211 1112234568899999999776543222111
Q ss_pred --ceeeee---eeeecCCCcceEEEEEeeecCCccEEEEee-CCCeEEEEecCCCcceecccccceeeec---cccccce
Q 018858 251 --GKRLHL---DYSVGGHTAAASCVAFSMFGERGKYLISGG-NDKLVKVWDCSRFQGVQTSINNDLLIKN---INLNKKV 321 (349)
Q Consensus 251 --~~~~~~---~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~---~~~~~~v 321 (349)
....+. +..+.. ...+..++|+ |+|++++.++ .++.|.+||+.+++..... ...... .......
T Consensus 203 ~d~~~~~~~~~~~~~~~-~~~~~~~~~s---pdg~~l~v~~~~~~~i~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~~ 275 (331)
T 3u4y_A 203 LETQNPENITLLNAVGT-NNLPGTIVVS---RDGSTVYVLTESTVDVFNFNQLSGTLSFVK---SFGHGLLIDPRPLFGA 275 (331)
T ss_dssp EECSSTTSCEEEEEEEC-SSCCCCEEEC---TTSSEEEEECSSEEEEEEEETTTTEEEEEE---EEECCCCCCCGGGTTC
T ss_pred EECCCCcccceeeeccC-CCCCceEEEC---CCCCEEEEEEcCCCEEEEEECCCCceeeec---ccccccccCCCCcccc
Confidence 111122 344443 3566889999 8999776554 5788999999987431100 001111 1111223
Q ss_pred EEEEeecCCCCcEEEee-CCCeEEEeeCC
Q 018858 322 NWLCTTPTESENLVVCD-TSKVVKVYSIS 349 (349)
Q Consensus 322 ~~~~~~~~~~~~l~~~~-~dg~i~iw~~~ 349 (349)
..++|+| ++++|++++ .++.|.+||++
T Consensus 276 ~~~~~sp-dg~~l~v~~~~~~~v~v~d~~ 303 (331)
T 3u4y_A 276 NQMALNK-TETKLFISANISRELKVFTIS 303 (331)
T ss_dssp CCEEECT-TSSEEEEEETTTTEEEEEETT
T ss_pred cceEECC-CCCEEEEecCCCCcEEEEEec
Confidence 5689988 787776665 56799999974
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-24 Score=179.68 Aligned_cols=261 Identities=8% Similarity=0.040 Sum_probs=187.6
Q ss_pred ceEEEeCCCCcEEEEECCCCcEEEEeecCCC--CeEEEEEecCCCEEEE-EeCCCeEEEEEccCCCcccceeecc--Ccc
Q 018858 29 GFVASSGEDGCICWFDLRSKDVQLVTDVGNG--PVTSLCFKSGNEDIIY-VSSGKEVKSFDVHMPASWRPLESYN--YNK 103 (349)
Q Consensus 29 ~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~--~~~ 103 (349)
++|++++.++.|.+||..+++.+..+..... .+..++|+|+++++++ +..++.|.+||+.+++....+..-. .+.
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 5789999999999999999998887764332 5788999999987654 5567899999998765433332210 012
Q ss_pred cceEEEEEccCCCEEEEEc------------CCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCc
Q 018858 104 EEINQIVCNPKSSFLACAD------------DGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAG 171 (349)
Q Consensus 104 ~~v~~~~~~~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 171 (349)
..+..++|+|++++++++. .++.|.+||+.+++.+..+. ....+.+++|+|
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~s~--------------- 144 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE--APRQITMLAWAR--------------- 144 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE--CCSSCCCEEECT---------------
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEe--CCCCcceeEECC---------------
Confidence 2577899999999988885 57899999999988877776 345678889999
Q ss_pred cccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeee-----
Q 018858 172 QCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEIL----- 246 (349)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 246 (349)
++++|+++ ++.|.+||+.+++......... ....+.++|+++.+++....
T Consensus 145 ---------------------dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~~~~ 199 (337)
T 1pby_B 145 ---------------------DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQS--WEAETYAQPDVLAVWNQHESSGVMA 199 (337)
T ss_dssp ---------------------TSSCEEEE--SSSEEEEETTTTEEEEEECSTT--TTTTTBCCCBCCCCCCCCTTTTEEE
T ss_pred ---------------------CCCEEEEe--CCeEEEEECCCCcEeeeeeccc--cCCCceeCCCccEEeeeccCCCcee
Confidence 78877777 6889999999887665443322 11234788888766532211
Q ss_pred -------------------------eecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcc
Q 018858 247 -------------------------DQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG 301 (349)
Q Consensus 247 -------------------------~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 301 (349)
+.... ... ...+..+...+.+++|+ |++++++++ ++.|++||+.+++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~-~~~-~~~~~~~~~~~~~~~~s---~dg~~l~~~--~~~v~~~d~~~~~- 271 (337)
T 1pby_B 200 TPFYTARKDIDPADPTAYRTGLLTMDLETG-EMA-MREVRIMDVFYFSTAVN---PAKTRAFGA--YNVLESFDLEKNA- 271 (337)
T ss_dssp EEEEEEBTTSCTTSGGGEEEEEEEEETTTC-CEE-EEEEEECSSCEEEEEEC---TTSSEEEEE--ESEEEEEETTTTE-
T ss_pred eeeeccccccccccccccccceEEEeCCCC-Cce-EeecCCCCCceeeEEEC---CCCCEEEEe--CCeEEEEECCCCc-
Confidence 11100 001 12233455667889999 899999888 7999999998863
Q ss_pred eecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 302 VQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.+.... ....+.+++|+| ++++|++++.++.|++||+.
T Consensus 272 --------~~~~~~-~~~~~~~~~~s~-dg~~l~~~~~~~~i~v~d~~ 309 (337)
T 1pby_B 272 --------SIKRVP-LPHSYYSVNVST-DGSTVWLGGALGDLAAYDAE 309 (337)
T ss_dssp --------EEEEEE-CSSCCCEEEECT-TSCEEEEESBSSEEEEEETT
T ss_pred --------Ccceec-CCCceeeEEECC-CCCEEEEEcCCCcEEEEECc
Confidence 332322 234678899988 88888888999999999973
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-25 Score=181.63 Aligned_cols=239 Identities=9% Similarity=-0.015 Sum_probs=177.9
Q ss_pred CCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCC-CcEEEEeecC-CCCeEEEEEecCCCEEEEEeC--CCeE
Q 018858 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRS-KDVQLVTDVG-NGPVTSLCFKSGNEDIIYVSS--GKEV 82 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~-~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~--dg~i 82 (349)
....+..|...|.+++|+|+ +++|++++ ++.|++||+.+ ++.......+ ...+.+++|+|++++|++++. ++..
T Consensus 33 ~~~~~~~~~~~v~~~~~spd-g~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 110 (297)
T 2ojh_A 33 KMRVVWQTPELFEAPNWSPD-GKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKS 110 (297)
T ss_dssp EEEEEEEESSCCEEEEECTT-SSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSC
T ss_pred ceeeeccCCcceEeeEECCC-CCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcc
Confidence 34566678899999999998 88888876 78999999998 8777666555 367889999999999999983 3455
Q ss_pred EEEEc--cCCCcccceeeccCcccceEEEEEccCCCEEE-EEcCCCcEEEEEcC--CceEeceeccccccceeEEEEccC
Q 018858 83 KSFDV--HMPASWRPLESYNYNKEEINQIVCNPKSSFLA-CADDGGDVKIIDIR--QHCLYKSLRAGHSSICSSVQFIPW 157 (349)
Q Consensus 83 ~iwd~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~v~~~~~~~~ 157 (349)
.||.+ .++. ...+..+ ..+..++|+|++++|+ ++..++.+++|++. +++. ..+. .+...+.+++|+|
T Consensus 111 ~l~~~~~~~~~----~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~-~~~~-~~~~~~~~~~~s~- 182 (297)
T 2ojh_A 111 AIYLLPSTGGT----PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE-TRLT-HGEGRNDGPDYSP- 182 (297)
T ss_dssp EEEEEETTCCC----CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE-EECC-CSSSCEEEEEECT-
T ss_pred eEEEEECCCCc----eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcc-eEcc-cCCCccccceECC-
Confidence 55544 4332 2222222 3488899999999887 77788989999864 3433 4444 5677889999999
Q ss_pred CCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEc-CCCeEEEEEccCceeeeecCCCCCCccceeeeecc
Q 018858 158 KPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKV 236 (349)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (349)
+++.|++++ .++.+++|++....
T Consensus 183 -----------------------------------dg~~l~~~~~~~~~~~i~~~~~~~--------------------- 206 (297)
T 2ojh_A 183 -----------------------------------DGRWIYFNSSRTGQMQIWRVRVDG--------------------- 206 (297)
T ss_dssp -----------------------------------TSSEEEEEECTTSSCEEEEEETTS---------------------
T ss_pred -----------------------------------CCCEEEEEecCCCCccEEEECCCC---------------------
Confidence 788777655 58899999886310
Q ss_pred ccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCC-----------CeEEEEecCCCcceecc
Q 018858 237 NIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND-----------KLVKVWDCSRFQGVQTS 305 (349)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d-----------~~i~vwd~~~~~~~~~~ 305 (349)
.....+..|...+..+.|+ |++++|++++.+ +.|++||+.+++.
T Consensus 207 ------------------~~~~~~~~~~~~~~~~~~s---~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~---- 261 (297)
T 2ojh_A 207 ------------------SSVERITDSAYGDWFPHPS---PSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV---- 261 (297)
T ss_dssp ------------------SCEEECCCCSEEEEEEEEC---TTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC----
T ss_pred ------------------CCcEEEecCCcccCCeEEC---CCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc----
Confidence 2234455677788999999 899999888765 5699999988632
Q ss_pred cccceeeeccccccceEEEEeecCCCCcEEEeeCC
Q 018858 306 INNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS 340 (349)
Q Consensus 306 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 340 (349)
..+....+|...+..++|+| ++++|++++.|
T Consensus 262 ---~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~ 292 (297)
T 2ojh_A 262 ---ETLFDLFGGQGTMNSPNWSP-DGDEFAYVRYF 292 (297)
T ss_dssp ---EEEEEEEESTTTSCSCCBCT-TSSEEEEEEEC
T ss_pred ---eeeeccCCCCcccccceECC-CCCEEEEEEec
Confidence 22334446788899999988 78888888655
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-24 Score=179.40 Aligned_cols=268 Identities=12% Similarity=0.090 Sum_probs=179.7
Q ss_pred eEEEeCCCCcEEEEECC-CCc--EEEEeecCCCCeEEEEEecCCCEEEEEeCC-CeEEEEEcc--CCCcccceeeccCcc
Q 018858 30 FVASSGEDGCICWFDLR-SKD--VQLVTDVGNGPVTSLCFKSGNEDIIYVSSG-KEVKSFDVH--MPASWRPLESYNYNK 103 (349)
Q Consensus 30 ~l~t~~~dg~i~vwd~~-~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~iwd~~--~~~~~~~~~~~~~~~ 103 (349)
++++++.++.|++||+. +++ .+..+ .+...+..++|+|++++|++++.+ +.|.+|++. +++ ...+..+..+
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~- 83 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGA-LTFAAESALP- 83 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCC-EEEEEEEECS-
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCc-eeeccccccC-
Confidence 44555789999999985 333 23333 467788999999999999988876 899999997 332 2333344333
Q ss_pred cceEEEEEccCCCEEEEEc-CCCcEEEEEcC---CceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCcee
Q 018858 104 EEINQIVCNPKSSFLACAD-DGGDVKIIDIR---QHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFV 179 (349)
Q Consensus 104 ~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (349)
..+..++|+|+++++++++ .++.|++||+. ..+....+. ....+.+++|+|
T Consensus 84 ~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~s~----------------------- 138 (343)
T 1ri6_A 84 GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE--GLDGCHSANISP----------------------- 138 (343)
T ss_dssp SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC--CCTTBCCCEECT-----------------------
T ss_pred CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc--CCCCceEEEECC-----------------------
Confidence 3788999999999876655 48889999994 444555554 334588889998
Q ss_pred EEeecCcccccCCCCcEEEEEc-CCCeEEEEEccC-ceeee----ecCCCCCCccceeeeeccccEEEEeeeeeecC---
Q 018858 180 HAIAIPDADMLDKTNKICVVAK-GDGVVDVINIES-ELNIS----RSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG--- 250 (349)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 250 (349)
+++.+++++ .++.|.+||+.+ ++... ............++|+|+++++++....+..+
T Consensus 139 -------------dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~ 205 (343)
T 1ri6_A 139 -------------DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVW 205 (343)
T ss_dssp -------------TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred -------------CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEE
Confidence 787777766 899999999987 43322 22223345667899999999876543221110
Q ss_pred -c----ee---eeeeeeecC-C--CcceEEEEEeeecCCccEEE-EeeCCCeEEEEecCCCcceecccccceeeeccccc
Q 018858 251 -G----KR---LHLDYSVGG-H--TAAASCVAFSMFGERGKYLI-SGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLN 318 (349)
Q Consensus 251 -~----~~---~~~~~~~~~-h--~~~i~~i~~~~~~~~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 318 (349)
. .. ......+.. + ...+..++|+ |++++|+ ++..|+.|++||+....... ..+.....+.
T Consensus 206 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s---~dg~~l~v~~~~~~~i~v~d~~~~~~~~-----~~~~~~~~~~ 277 (343)
T 1ri6_A 206 ELKDPHGNIECVQTLDMMPENFSDTRWAADIHIT---PDGRHLYACDRTASLITVFSVSEDGSVL-----SKEGFQPTET 277 (343)
T ss_dssp ESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEEC---TTSSEEEEEETTTTEEEEEEECTTSCCE-----EEEEEEECSS
T ss_pred EecCCCCcEEEEeeccccCccccccCCccceEEC---CCCCEEEEEecCCCEEEEEEEcCCCCce-----EEeeeecCCC
Confidence 0 01 111111221 1 2356789999 8998777 45578999999998311000 2332333333
Q ss_pred cceEEEEeecCCCCcEEEee-CCCeEEEeeC
Q 018858 319 KKVNWLCTTPTESENLVVCD-TSKVVKVYSI 348 (349)
Q Consensus 319 ~~v~~~~~~~~~~~~l~~~~-~dg~i~iw~~ 348 (349)
. +..++|+| ++++|++++ .++.|.+|++
T Consensus 278 ~-~~~~~~s~-dg~~l~~~~~~~~~v~v~~~ 306 (343)
T 1ri6_A 278 Q-PRGFNVDH-SGKYLIAAGQKSHHISVYEI 306 (343)
T ss_dssp S-CCCEEECT-TSSEEEEECTTTCEEEEEEE
T ss_pred c-cceEEECC-CCCEEEEecCCCCeEEEEEE
Confidence 3 88899988 788888877 6899999964
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=205.24 Aligned_cols=306 Identities=8% Similarity=-0.033 Sum_probs=190.5
Q ss_pred eeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCC---CeEEEEEecCCCEEEEEeCC---------CeEEE
Q 018858 17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNG---PVTSLCFKSGNEDIIYVSSG---------KEVKS 84 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~d---------g~i~i 84 (349)
.+.+++|+|+ ++++++ +.||.|++||+.+++....+..|.. .|.+++|+|+|++|++++.+ +.+.+
T Consensus 18 ~~~~~~~spd-g~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~ 95 (723)
T 1xfd_A 18 HDPEAKWISD-TEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL 95 (723)
T ss_dssp CCCCCCBSSS-SCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred cccccEEcCC-CcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEE
Confidence 4678899998 777766 6899999999999988777777664 49999999999999999764 78999
Q ss_pred EEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccc----------------
Q 018858 85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSI---------------- 148 (349)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---------------- 148 (349)
||+.+++. ..+.....+...+..++|+|+|+.|+.++. +.|++||+.+++...... .+...
T Consensus 96 ~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~-~~~~~~~~~g~~~~v~~ee~~ 172 (723)
T 1xfd_A 96 SKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVS-TGKEGVIYNGLSDWLYEEEIL 172 (723)
T ss_dssp EESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEEC-CCBTTTEEEEECCHHHHHTTS
T ss_pred EECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEec-CCCCCceECcccceeEEEEec
Confidence 99998754 334444444455889999999999999886 789999999887655544 33322
Q ss_pred --eeEEEEccCCCCCCCC--CCCCC-Cc-----cccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeee
Q 018858 149 --CSSVQFIPWKPWEGLP--ENNGN-AG-----QCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS 218 (349)
Q Consensus 149 --v~~~~~~~~~~~~~~~--~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 218 (349)
+.+++|+|+|.++... +.... .. .......+..+.+.+ +|.. ..+..|++||+.+++...
T Consensus 173 ~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~G~~----~~~~~l~~~d~~~~~~~~ 242 (723)
T 1xfd_A 173 KTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPK------AGSE----NPSISLHVIGLNGPTHDL 242 (723)
T ss_dssp SSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCB------TTSC----CCEEEEEEEESSSSCCCE
T ss_pred cCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCC------CCCC----CCeeEEEEEECCCCceeE
Confidence 3789999965544211 00000 00 000001123333333 2221 123489999998876433
Q ss_pred ecCCC-----CCCccceeeeeccccEEEEeeee---eecC----ceeeeeeeeecC-CCcce----EEEEEeeecCCccE
Q 018858 219 RSKST-----TKPLKGSQSTSKVNIRDAEMEIL---DQSG----GKRLHLDYSVGG-HTAAA----SCVAFSMFGERGKY 281 (349)
Q Consensus 219 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~~~~-h~~~i----~~i~~~~~~~~~~~ 281 (349)
....+ ....+..++|+|||+++++.... +..+ ....+....+.. +...+ ..+.|+ |||+.
T Consensus 243 ~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~s---pdg~~ 319 (723)
T 1xfd_A 243 EMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFS---KDGRK 319 (723)
T ss_dssp ECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEEC---TTSCS
T ss_pred EeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEc---CCCCe
Confidence 33322 14456789999999988653221 1110 001122222222 23333 378899 89997
Q ss_pred EEE--eeCCC------eEEEEe-cCCCcceecccccceeeeccccccceEE-EEeecCCCCcEEEeeCC---CeEEEeeC
Q 018858 282 LIS--GGNDK------LVKVWD-CSRFQGVQTSINNDLLIKNINLNKKVNW-LCTTPTESENLVVCDTS---KVVKVYSI 348 (349)
Q Consensus 282 l~s--~~~d~------~i~vwd-~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~~~d---g~i~iw~~ 348 (349)
|+. +..|+ .|++|| ...+.. .....+..+...+.. ++|+| +++.|+..+.+ +.+++|++
T Consensus 320 l~~~~~~~~~~~~~~~~l~~~d~~~~~~~-------~~~~~l~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~ 391 (723)
T 1xfd_A 320 FFFIRAIPQGGRGKFYHITVSSSQPNSSN-------DNIQSITSGDWDVTKILAYDE-KGNKIYFLSTEDLPRRRQLYSA 391 (723)
T ss_dssp EEEEEEECCSSSSCEEEEEEECSSCCSSS-------CCCCBSCCSSSCEEEEEEEET-TTTEEEEEESSSCTTCCEEEEE
T ss_pred EEEEEecccCCCcceeEEEEEeccCCCCc-------cceeEeecCCeEEEeeeEEcC-CCCEEEEEEcCCCCcceEEEEE
Confidence 764 44666 577777 344310 002223333334444 68988 88888766544 78999986
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-24 Score=202.88 Aligned_cols=317 Identities=6% Similarity=-0.055 Sum_probs=220.8
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCC------CCcEEEEECCCCcEEEEeecCCCCe-------EEEEEecCCC
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGE------DGCICWFDLRSKDVQLVTDVGNGPV-------TSLCFKSGNE 71 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~------dg~i~vwd~~~~~~~~~~~~~~~~v-------~~~~~~~~~~ 71 (349)
+...+.|.+|...+.+++|||+ |++|++++. +..|++||+.+++ ...+..|...+ ..++|+|+|+
T Consensus 42 gg~~~~lt~~~~~v~~~~~SPD-G~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~ 119 (1045)
T 1k32_A 42 SGSTRKIVSNLGVINNARFFPD-GRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPDGN 119 (1045)
T ss_dssp TCCEEEEECSSSEEEEEEECTT-SSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEEEEECTTCC
T ss_pred CCcEEEeeeCCCcccCeEECCC-CCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccccccccCCCCCE
Confidence 4567889999999999999999 888887753 3479999998776 56777788877 8999999999
Q ss_pred EEEEEeCC------CeEEEEEccCCCcccc----------------------------------------------eeec
Q 018858 72 DIIYVSSG------KEVKSFDVHMPASWRP----------------------------------------------LESY 99 (349)
Q Consensus 72 ~l~~~~~d------g~i~iwd~~~~~~~~~----------------------------------------------~~~~ 99 (349)
.+++++.+ ..|.+|++..++.... ...+
T Consensus 120 ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l 199 (1045)
T 1k32_A 120 LIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKI 199 (1045)
T ss_dssp EEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEE
T ss_pred EEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEEC
Confidence 77777644 3688888765431110 0112
Q ss_pred cCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCC-ceEeceeccccccceeEEEEccCCCCCCCC-CCC--------CC
Q 018858 100 NYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ-HCLYKSLRAGHSSICSSVQFIPWKPWEGLP-ENN--------GN 169 (349)
Q Consensus 100 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~--------~~ 169 (349)
..|...+.++.|+++ ..+++++.++.+.+|.+.. +.....+. .+. .+...+|+|++.++... +.. ..
T Consensus 200 ~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~-~~~-~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~ 276 (1045)
T 1k32_A 200 VDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHT-SFT-DYYPRHLNTDGRRILFSKGGSIYIFNPDTEK 276 (1045)
T ss_dssp ECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECC-CCC-SSCEEEEEESSSCEEEEETTEEEEECTTTCC
T ss_pred cCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEec-CCC-CcceeeEcCCCCEEEEEeCCEEEEecCCceE
Confidence 335566778888887 6667778888889998653 33344444 333 46678999998765321 100 00
Q ss_pred Ccccc------------CCceeEEeecC-cccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeecc
Q 018858 170 AGQCY------------NPAFVHAIAIP-DADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKV 236 (349)
Q Consensus 170 ~~~~~------------~~~~~~~~~~~-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (349)
..... ....+..++++ | +++.|++++ ++.|.+|+...+..... .......+..++|+ |
T Consensus 277 l~~l~~~~~~~~~~~~~~~~~v~~~~~S~p------dG~~la~~~-~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~s-d 347 (1045)
T 1k32_A 277 IEKIEIGDLESPEDRIISIPSKFAEDFSPL------DGDLIAFVS-RGQAFIQDVSGTYVLKV-PEPLRIRYVRRGGD-T 347 (1045)
T ss_dssp EEECCCCCCCBCCSEEEECGGGGEEEEEEC------GGGCEEEEE-TTEEEEECTTSSBEEEC-SCCSCEEEEEECSS-S
T ss_pred eeeeccCcccccccccccccccceeeecCC------CCCEEEEEE-cCEEEEEcCCCCceEEc-cCCCcceEEeeeEc-C
Confidence 00000 11246778888 8 899888887 78999999987654432 22222267889999 9
Q ss_pred ccEEEEeeeeeecCc---e-eeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceee
Q 018858 237 NIRDAEMEILDQSGG---K-RLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLI 312 (349)
Q Consensus 237 ~~~~~~~~~~~~~~~---~-~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 312 (349)
|+.+++... +..+. . .......+.+|...+..++|+ |||++|++++.++.|++||+.++ ....
T Consensus 348 g~~l~~~s~-~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~S---pDG~~la~~~~~~~v~~~d~~tg---------~~~~ 414 (1045)
T 1k32_A 348 KVAFIHGTR-EGDFLGIYDYRTGKAEKFEENLGNVFAMGVD---RNGKFAVVANDRFEIMTVDLETG---------KPTV 414 (1045)
T ss_dssp EEEEEEEET-TEEEEEEEETTTCCEEECCCCCCSEEEEEEC---TTSSEEEEEETTSEEEEEETTTC---------CEEE
T ss_pred CCeEEEEEC-CCceEEEEECCCCCceEecCCccceeeeEEC---CCCCEEEEECCCCeEEEEECCCC---------ceEE
Confidence 998886432 11111 0 001122344677889999999 99999999999999999999987 4444
Q ss_pred eccccccceEEEEeecCCCCcEEEeeCC----------CeEEEeeCC
Q 018858 313 KNINLNKKVNWLCTTPTESENLVVCDTS----------KVVKVYSIS 349 (349)
Q Consensus 313 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d----------g~i~iw~~~ 349 (349)
...+|...+..++|+| ||++|++++.+ +.|++||+.
T Consensus 415 ~~~~~~~~v~~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~ 460 (1045)
T 1k32_A 415 IERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDME 460 (1045)
T ss_dssp EEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred eccCCCCCccceEECC-CCCeEEEEecCccccccCCCCCeEEEEECC
Confidence 4557888899999988 89889888764 499999973
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-23 Score=192.11 Aligned_cols=274 Identities=15% Similarity=0.040 Sum_probs=190.5
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccC-----C
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM-----P 90 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~ 90 (349)
..|.+++|+|+ +.++++. ++.|++||+.+++... +..+...+..++|+|+|++|+++ .++.|++||+.+ +
T Consensus 82 ~~v~~~~~spd-~~~~~~~--~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g 156 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT--QGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMS 156 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE--TTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCC
T ss_pred cCceeEEECCC-CeEEEEE--CCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCC
Confidence 56999999998 6666664 4899999999887544 44466778899999999999985 589999999987 6
Q ss_pred CcccceeeccCccc--------------ceEEEEEccCCCEEEEEc---------------------------------C
Q 018858 91 ASWRPLESYNYNKE--------------EINQIVCNPKSSFLACAD---------------------------------D 123 (349)
Q Consensus 91 ~~~~~~~~~~~~~~--------------~v~~~~~~~~~~~l~~~~---------------------------------~ 123 (349)
+....... +.. .+.+++|+||+++|++++ .
T Consensus 157 ~~~~~~~~---~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~ 233 (706)
T 2z3z_A 157 RAIAVTID---GTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSH 233 (706)
T ss_dssp CCEESCSC---CBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCC
T ss_pred CcEEeccC---CCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCC
Confidence 43322211 112 147899999999999887 3
Q ss_pred CCcEEEEEcCCceEeceec-cccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcC
Q 018858 124 GGDVKIIDIRQHCLYKSLR-AGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG 202 (349)
Q Consensus 124 dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (349)
+..|++||+.+++...... ..+...+..++|+| +++.|++++.
T Consensus 234 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp------------------------------------dg~~l~~~~~ 277 (706)
T 2z3z_A 234 HVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSP------------------------------------DENILYVAEV 277 (706)
T ss_dssp EEEEEEEETTTTEEEECCCCSCTTCEEEEEEECT------------------------------------TSSEEEEEEE
T ss_pred eeEEEEEECCCCceEeeccCCCCceeEeeEEEEC------------------------------------CCCEEEEEEe
Confidence 4679999999887654432 13556788999999 7888888776
Q ss_pred CC-----eEEEEEccCc-eeeeecCCCCC---Cccceeeeec--cccEEEEeeeeeecC----ce-eeeeeeeecCCCcc
Q 018858 203 DG-----VVDVINIESE-LNISRSKSTTK---PLKGSQSTSK--VNIRDAEMEILDQSG----GK-RLHLDYSVGGHTAA 266 (349)
Q Consensus 203 dg-----~i~i~d~~~~-~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~----~~-~~~~~~~~~~h~~~ 266 (349)
++ .|.+||+.++ ........... ..+..++|+| ||+++++. ..++.. .. .......+..|...
T Consensus 278 ~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~ 356 (706)
T 2z3z_A 278 NRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQS-RRDGWNHLYLYDTTGRLIRQVTKGEWE 356 (706)
T ss_dssp CTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEE-CTTSSCEEEEEETTSCEEEECCCSSSC
T ss_pred CCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEE-ccCCccEEEEEECCCCEEEecCCCCeE
Confidence 65 8999999987 33322211111 1246789999 99977643 222211 11 12334556667777
Q ss_pred eEE-EEEeeecCCccEEEEee-CCC----eEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCC
Q 018858 267 ASC-VAFSMFGERGKYLISGG-NDK----LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS 340 (349)
Q Consensus 267 i~~-i~~~~~~~~~~~l~s~~-~d~----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 340 (349)
+.. +.|+ |+++.|+.++ .++ .|+.||+.++ . ...+ .+...+..++|+| ++++++..+.+
T Consensus 357 v~~~~~~s---pdg~~l~~~~~~~~~~~~~l~~~d~~~~---------~-~~~l-~~~~~~~~~~~sp-dg~~l~~~~~~ 421 (706)
T 2z3z_A 357 VTNFAGFD---PKGTRLYFESTEASPLERHFYCIDIKGG---------K-TKDL-TPESGMHRTQLSP-DGSAIIDIFQS 421 (706)
T ss_dssp EEEEEEEC---TTSSEEEEEESSSCTTCBEEEEEETTCC---------C-CEES-CCSSSEEEEEECT-TSSEEEEEEEC
T ss_pred EEeeeEEc---CCCCEEEEEecCCCCceEEEEEEEcCCC---------C-ceec-cCCCceEEEEECC-CCCEEEEEecC
Confidence 776 7999 8998776555 444 6777777765 2 1122 3566788999988 78777766433
Q ss_pred ----CeEEEeeCC
Q 018858 341 ----KVVKVYSIS 349 (349)
Q Consensus 341 ----g~i~iw~~~ 349 (349)
+.|++||+.
T Consensus 422 ~~~p~~i~l~d~~ 434 (706)
T 2z3z_A 422 PTVPRKVTVTNIG 434 (706)
T ss_dssp SSCSCEEEEEESS
T ss_pred CCCCcEEEEEECC
Confidence 569999863
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-23 Score=173.42 Aligned_cols=254 Identities=9% Similarity=0.108 Sum_probs=171.4
Q ss_pred CCceeeeEEEEecCCCceEEEeC--CCCcEEEEECCCCcE--EEEeecCCCCeEEEEEecCCCEEEEEe-CCCeEEEEEc
Q 018858 13 GHKATATCCIASRDRPGFVASSG--EDGCICWFDLRSKDV--QLVTDVGNGPVTSLCFKSGNEDIIYVS-SGKEVKSFDV 87 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~t~~--~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~ 87 (349)
.+......++|+|+ +++++++. .++.|.+|++.+++. +..+..+...+..++|+|++++|++++ .++.|.+|++
T Consensus 37 ~~~~~p~~~a~spd-g~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~ 115 (347)
T 3hfq_A 37 AATQNPTYLALSAK-DCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKI 115 (347)
T ss_dssp EECSCCCCEEECTT-CEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred eccCCcceEEEccC-CeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence 35566778999998 67444432 268999999977653 444455677888999999999998888 6799999999
Q ss_pred cCCCcccceeeccC---------cccceEEEEEccCCCEEEEEcCCCcEEEEEcC-CceEec--eeccccccceeEEEEc
Q 018858 88 HMPASWRPLESYNY---------NKEEINQIVCNPKSSFLACADDGGDVKIIDIR-QHCLYK--SLRAGHSSICSSVQFI 155 (349)
Q Consensus 88 ~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~--~~~~~~~~~v~~~~~~ 155 (349)
........+..... ....+.+++|+|+++++++...++.|++|++. +++... .+.......+..++|+
T Consensus 116 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~s 195 (347)
T 3hfq_A 116 AADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFS 195 (347)
T ss_dssp CTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEEC
T ss_pred CCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEEC
Confidence 64322333333211 11247889999999977777778899999998 454322 2221123356778888
Q ss_pred cCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEE-EcCCCeEEEEEccC--ceeeeecCCCCCCccceee
Q 018858 156 PWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV-AKGDGVVDVINIES--ELNISRSKSTTKPLKGSQS 232 (349)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~--~~~~~~~~~~~~~~~~~~~ 232 (349)
| +++++++ ...++.|.+|++.. ++...
T Consensus 196 p------------------------------------dg~~l~v~~~~~~~v~v~~~~~~~g~~~~-------------- 225 (347)
T 3hfq_A 196 P------------------------------------DGQYAFLAGELSSQIASLKYDTQTGAFTQ-------------- 225 (347)
T ss_dssp T------------------------------------TSSEEEEEETTTTEEEEEEEETTTTEEEE--------------
T ss_pred C------------------------------------CCCEEEEEeCCCCEEEEEEecCCCCceEE--------------
Confidence 8 7885555 56789999999874 21000
Q ss_pred eeccccEEEEeeeeeecCceeeeeeeeecC---CCcceEEEEEeeecCCccEEE-EeeCCCeEEEEecCCCcceeccccc
Q 018858 233 TSKVNIRDAEMEILDQSGGKRLHLDYSVGG---HTAAASCVAFSMFGERGKYLI-SGGNDKLVKVWDCSRFQGVQTSINN 308 (349)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---h~~~i~~i~~~~~~~~~~~l~-s~~~d~~i~vwd~~~~~~~~~~~~~ 308 (349)
......... ....+..++|+ |+|++|+ +...++.|.+|++......
T Consensus 226 ---------------------~~~~~~~~~~~~~~~~~~~i~~s---pdG~~l~v~~~~~~~v~v~~~~~~g~~------ 275 (347)
T 3hfq_A 226 ---------------------LGIVKTIPADYTAHNGAAAIRLS---HDGHFLYVSNRGYNTLAVFAVTADGHL------ 275 (347)
T ss_dssp ---------------------EEEEESSCTTCCSCCEEEEEEEC---TTSCEEEEEEETTTEEEEEEECGGGCE------
T ss_pred ---------------------eeeeeecCCCCCCCCcceeEEEC---CCCCEEEEEeCCCCEEEEEEECCCCcE------
Confidence 001111111 12457899999 8999874 5556899999999732111
Q ss_pred ceeeeccccccceEEEEeecCCCCcEEEeeC-CCeEEEeeC
Q 018858 309 DLLIKNINLNKKVNWLCTTPTESENLVVCDT-SKVVKVYSI 348 (349)
Q Consensus 309 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~iw~~ 348 (349)
..+.....+...+..++|+| ++++|++++. ++.|.+|++
T Consensus 276 ~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~ 315 (347)
T 3hfq_A 276 TLIQQISTEGDFPRDFDLDP-TEAFVVVVNQNTDNATLYAR 315 (347)
T ss_dssp EEEEEEECSSSCCCEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred EEeEEEecCCCCcCeEEECC-CCCEEEEEEcCCCcEEEEEE
Confidence 33334445566788999988 8888888875 589999954
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.4e-23 Score=171.29 Aligned_cols=271 Identities=11% Similarity=0.055 Sum_probs=192.4
Q ss_pred ceeeeEEEEecCCCceEEEeCC-------CCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEE-eCCCeEEEEE
Q 018858 15 KATATCCIASRDRPGFVASSGE-------DGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYV-SSGKEVKSFD 86 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~-------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd 86 (349)
...+..++|+|+ ++++++++. ++.|.+||..+++.+..+... ..+..++|+|++++++++ ..++.|.+||
T Consensus 40 ~~~~~~~~~s~d-g~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 40 GKGAYEMAYSQQ-ENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp ESSEEEEEEETT-TTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ccCccceEECCC-CCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 456788999998 677666653 568999999999988887753 447789999999966555 4579999999
Q ss_pred ccCCCcccceeeccCc------ccceEEEEEccCCCEEEEEc--CCCcEEEEEcCCceEeceeccccccceeEEEEccCC
Q 018858 87 VHMPASWRPLESYNYN------KEEINQIVCNPKSSFLACAD--DGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWK 158 (349)
Q Consensus 87 ~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 158 (349)
.++++....+..-... ...+..++|+|+++++++++ .++.|.+||+.+++....+. .+...+.+++|+|
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~s~-- 194 (353)
T 3vgz_A 118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQ-NTGKMSTGLALDS-- 194 (353)
T ss_dssp TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEEC-CCCTTCCCCEEET--
T ss_pred CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEec-CCCCccceEEECC--
Confidence 9987544333321100 01268899999998877665 47889999999999888776 5556688899999
Q ss_pred CCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCC---CCCccceeeeec
Q 018858 159 PWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKST---TKPLKGSQSTSK 235 (349)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~ 235 (349)
+++.+++++.++.|.+||+.+++........ .......++++|
T Consensus 195 ----------------------------------dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 240 (353)
T 3vgz_A 195 ----------------------------------EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDT 240 (353)
T ss_dssp ----------------------------------TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEET
T ss_pred ----------------------------------CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECC
Confidence 7889999999999999999988776544332 234456799999
Q ss_pred cccEEEEeeeeeec----CceeeeeeeeecCCCcceEEEEEeeecCCccEEEEee-CCCeEEEEecCCCcceecccccce
Q 018858 236 VNIRDAEMEILDQS----GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG-NDKLVKVWDCSRFQGVQTSINNDL 310 (349)
Q Consensus 236 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~ 310 (349)
+++.+++....+.. .....+....+.... ...+.|+ |++++++.++ .++.|.+||..++ +.
T Consensus 241 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s---~dg~~l~v~~~~~~~v~~~d~~~~---------~~ 306 (353)
T 3vgz_A 241 ARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFN---PARNEAYVTHRQAGKVSVIDAKSY---------KV 306 (353)
T ss_dssp TTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CCCEEEE---TTTTEEEEEETTTTEEEEEETTTT---------EE
T ss_pred CCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--CceEEEC---CCCCEEEEEECCCCeEEEEECCCC---------eE
Confidence 99988754322111 111222333333222 2568899 8998665554 7899999999987 33
Q ss_pred eeeccccccceEEEEeecCCCCcEEEeeCC
Q 018858 311 LIKNINLNKKVNWLCTTPTESENLVVCDTS 340 (349)
Q Consensus 311 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 340 (349)
+.... ....+..++|+| ++++|+++..+
T Consensus 307 ~~~~~-~~~~~~~~~~s~-dg~~l~v~~~~ 334 (353)
T 3vgz_A 307 VKTFD-TPTHPNSLALSA-DGKTLYVSVKQ 334 (353)
T ss_dssp EEEEE-CCSEEEEEEECT-TSCEEEEEEEC
T ss_pred EEEEe-cCCCCCeEEEcC-CCCEEEEEEcc
Confidence 33332 334678999988 78777666544
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-24 Score=184.38 Aligned_cols=210 Identities=15% Similarity=0.119 Sum_probs=155.7
Q ss_pred ceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC----------cEEEE-----eecCCCCeEEEEEecCCCEEE----E
Q 018858 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSK----------DVQLV-----TDVGNGPVTSLCFKSGNEDII----Y 75 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~----------~~~~~-----~~~~~~~v~~~~~~~~~~~l~----~ 75 (349)
...+..++++++ +.++++++.++ +++|+.... ..+.. ...+...|.+++|+|++++|+ +
T Consensus 36 ~~~~n~lavs~~-~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 36 KERSSLLAVSNK-YGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CSCCBCEEEETT-TTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CCCccEEEEecC-CCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence 345889999998 78899998887 888874210 11111 112567899999999999999 7
Q ss_pred EeCCCeEEEEEccCC--------CcccceeeccCcccceEEEEEccC-CCEEEEEcCCCcEEEEEcCCceEeceeccccc
Q 018858 76 VSSGKEVKSFDVHMP--------ASWRPLESYNYNKEEINQIVCNPK-SSFLACADDGGDVKIIDIRQHCLYKSLRAGHS 146 (349)
Q Consensus 76 ~~~dg~i~iwd~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 146 (349)
++.|+.|++||+++. +....+..+.+|...|.+++|+|+ +.+|++++.||.|++||++++....... +|.
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~-~~~ 192 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATL-PST 192 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEE-CGG
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeecc-CCC
Confidence 888999999998754 112234556678899999999998 7899999999999999999887766666 688
Q ss_pred cceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCC
Q 018858 147 SICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKP 226 (349)
Q Consensus 147 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 226 (349)
..+.+++|+| ++++|++|+.||.|++||.+. +.......+
T Consensus 193 ~~v~~v~wsp------------------------------------dg~~lasgs~dg~v~iwd~~~-~~~~~~~~~--- 232 (434)
T 2oit_A 193 VAVTSVCWSP------------------------------------KGKQLAVGKQNGTVVQYLPTL-QEKKVIPCP--- 232 (434)
T ss_dssp GCEEEEEECT------------------------------------TSSCEEEEETTSCEEEECTTC-CEEEEECCC---
T ss_pred CceeEEEEcC------------------------------------CCCEEEEEcCCCcEEEEccCC-cccccccCC---
Confidence 8999999999 799999999999999999983 111100000
Q ss_pred ccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEee-CCC------eEEEEecCCC
Q 018858 227 LKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG-NDK------LVKVWDCSRF 299 (349)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~-~d~------~i~vwd~~~~ 299 (349)
......|...|.++.|+ +++.++++.+ .|| .+++|++.+.
T Consensus 233 ------------------------------~~~~~~~~~~v~~v~w~---~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 233 ------------------------------PFYESDHPVRVLDVLWI---GTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp ------------------------------TTCCTTSCEEEEEEEEE---ETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred ------------------------------cccCCCCceeEEEEEEe---cCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 00011344589999999 7877775533 443 3999999875
Q ss_pred c
Q 018858 300 Q 300 (349)
Q Consensus 300 ~ 300 (349)
+
T Consensus 280 ~ 280 (434)
T 2oit_A 280 E 280 (434)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-23 Score=193.06 Aligned_cols=275 Identities=9% Similarity=-0.013 Sum_probs=191.6
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc--EEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcc
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKD--VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASW 93 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (349)
..|.+++|+|+ +++|++++. +.|++||+.++. ....+..|...+..++|+|+|++|++++ ++.|++||+.+++..
T Consensus 109 ~~v~~~~~SpD-g~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~ 185 (741)
T 2ecf_A 109 TGIVDYQWSPD-AQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQM 185 (741)
T ss_dssp EESCCCEECTT-SSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEE
T ss_pred cCcceeEECCC-CCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEE
Confidence 44889999999 888888876 899999999872 3445666788899999999999999988 568999999875432
Q ss_pred cceeeccCccc----------------ceEEEEEccCCCEEEEEcCCC--------------------------------
Q 018858 94 RPLESYNYNKE----------------EINQIVCNPKSSFLACADDGG-------------------------------- 125 (349)
Q Consensus 94 ~~~~~~~~~~~----------------~v~~~~~~~~~~~l~~~~~dg-------------------------------- 125 (349)
.... .+.. .+..++|+|||++|++++.|+
T Consensus 186 ~~~~---~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~ 262 (741)
T 2ecf_A 186 QLTA---DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQ 262 (741)
T ss_dssp ECCC---CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCE
T ss_pred Eecc---CCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCe
Confidence 2111 1111 147799999999999887665
Q ss_pred -cEEEEEcCC-ceEeceecc-ccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcC
Q 018858 126 -DVKIIDIRQ-HCLYKSLRA-GHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG 202 (349)
Q Consensus 126 -~i~i~d~~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (349)
.|++||+.+ ++....... .+...+..++| | +++.|++++.
T Consensus 263 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-p------------------------------------Dg~~l~~~~~ 305 (741)
T 2ecf_A 263 VKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-R------------------------------------DPQHLSFQRQ 305 (741)
T ss_dssp EEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-E------------------------------------ETTEEEEEEE
T ss_pred eEEEEEECCCCCceEEecCCCCcceEEEEEEe-C------------------------------------CCCEEEEEEe
Confidence 788899888 765443321 25677888999 9 7888886653
Q ss_pred -----CCeEEEEEccCceeeeecCCCCCC---ccceeeeeccccEEEEeeeeeecCc-----eeeeeeeeecCCCcceEE
Q 018858 203 -----DGVVDVINIESELNISRSKSTTKP---LKGSQSTSKVNIRDAEMEILDQSGG-----KRLHLDYSVGGHTAAASC 269 (349)
Q Consensus 203 -----dg~i~i~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~h~~~i~~ 269 (349)
+..|++||+.+++........... .+..++|+|||+++++ +..++... .... ...+..|...+..
T Consensus 306 ~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~-~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~ 383 (741)
T 2ecf_A 306 SRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWS-SERTGFQHLYRIDSKGK-AAALTHGNWSVDE 383 (741)
T ss_dssp ETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEE-ECTTSSCEEEEECSSSC-EEESCCSSSCEEE
T ss_pred cccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEE-ecCCCccEEEEEcCCCC-eeeeeecceEEEe
Confidence 568999999987765544433322 3468999999996554 33232111 0112 4566677777888
Q ss_pred E-EEeeecCCccEEEE-eeCCC--eEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCC----C
Q 018858 270 V-AFSMFGERGKYLIS-GGNDK--LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS----K 341 (349)
Q Consensus 270 i-~~~~~~~~~~~l~s-~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g 341 (349)
+ .|+ |+++.|+. ++.|+ .++||++.... .....+.. ...+..++|+| ++++|+....+ .
T Consensus 384 ~~~~s---~dg~~l~~~~~~~~~~~~~l~~~~~~g--------~~~~~l~~-~~~~~~~~~sp-dg~~l~~~~~~~~~p~ 450 (741)
T 2ecf_A 384 LLAVD---EKAGLAYFRAGIESARESQIYAVPLQG--------GQPQRLSK-APGMHSASFAR-NASVYVDSWSNNSTPP 450 (741)
T ss_dssp EEEEE---TTTTEEEEEECSSCTTCBEEEEEETTC--------CCCEECCC-SCSEEEEEECT-TSSEEEEEEEETTEEE
T ss_pred EeEEe---CCCCEEEEEEeCCCCceEEEEEEEcCC--------CCeeeccc-CCCceEEEECC-CCCEEEEEecCCCCCC
Confidence 7 599 89987754 45555 89999986421 22223333 55678899988 77777766433 4
Q ss_pred eEEEeeC
Q 018858 342 VVKVYSI 348 (349)
Q Consensus 342 ~i~iw~~ 348 (349)
.+.+|+.
T Consensus 451 ~~~l~~~ 457 (741)
T 2ecf_A 451 QIELFRA 457 (741)
T ss_dssp EEEEEET
T ss_pred eEEEEEc
Confidence 6777764
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.9e-23 Score=194.42 Aligned_cols=271 Identities=8% Similarity=-0.011 Sum_probs=203.5
Q ss_pred CceeeeEEEEe-cCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCC-CeEEEEEecCCCEEEEEeCCCeEE-EEEccCC
Q 018858 14 HKATATCCIAS-RDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNG-PVTSLCFKSGNEDIIYVSSGKEVK-SFDVHMP 90 (349)
Q Consensus 14 h~~~i~~~~~~-~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~-iwd~~~~ 90 (349)
|...+.+++|+ |+ +++|++++ ++.|.+|+...++.. .+..|.. .+..++|+ +++.|++++.++.+. +|++..+
T Consensus 294 ~~~~v~~~~~S~pd-G~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~ 369 (1045)
T 1k32_A 294 SIPSKFAEDFSPLD-GDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTG 369 (1045)
T ss_dssp ECGGGGEEEEEECG-GGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTC
T ss_pred cccccceeeecCCC-CCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCC
Confidence 45579999999 98 88888877 789999999887754 4566777 89999999 999999999888888 9998865
Q ss_pred CcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCC
Q 018858 91 ASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNA 170 (349)
Q Consensus 91 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 170 (349)
+. ..+..+...+..++|+|++++|++++.++.|++||+.+++...... .|...+.+++|+|
T Consensus 370 ~~----~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~-~~~~~v~~~~~Sp-------------- 430 (1045)
T 1k32_A 370 KA----EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER-SREAMITDFTISD-------------- 430 (1045)
T ss_dssp CE----EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSSCCCCEEECT--------------
T ss_pred Cc----eEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEecc-CCCCCccceEECC--------------
Confidence 32 2222556789999999999999999999999999999998877776 6888899999999
Q ss_pred ccccCCceeEEeecCcccccCCCCcEEEEEcCCC----------eEEEEEccCceeeeecCCCCCCccceeeeeccccEE
Q 018858 171 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG----------VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRD 240 (349)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg----------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (349)
++++|++++.++ .|++||+.+++... ... .......++|+|||+.+
T Consensus 431 ----------------------DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~-l~~-~~~~~~~~~~spdG~~l 486 (1045)
T 1k32_A 431 ----------------------NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA-ATT-ENSHDYAPAFDADSKNL 486 (1045)
T ss_dssp ----------------------TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE-CSC-SSSBEEEEEECTTSCEE
T ss_pred ----------------------CCCeEEEEecCccccccCCCCCeEEEEECCCCcEEE-eeC-CCcccCCceEcCCCCEE
Confidence 789888877644 89999999876332 222 23446678999999998
Q ss_pred EEeeeeeec------Cc-------eee---------------------------------eeeeeecCCCcceEEEEEee
Q 018858 241 AEMEILDQS------GG-------KRL---------------------------------HLDYSVGGHTAAASCVAFSM 274 (349)
Q Consensus 241 ~~~~~~~~~------~~-------~~~---------------------------------~~~~~~~~h~~~i~~i~~~~ 274 (349)
++....... .. ... ..+..+..|.+.+..+.++
T Consensus 487 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s- 565 (1045)
T 1k32_A 487 YYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPL- 565 (1045)
T ss_dssp EEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEEC-
T ss_pred EEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEc-
Confidence 864331110 00 000 0112334466778999999
Q ss_pred ecCCccEEEE-------------eeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCC
Q 018858 275 FGERGKYLIS-------------GGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSK 341 (349)
Q Consensus 275 ~~~~~~~l~s-------------~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 341 (349)
|+++++++ ...+..|++||+.+++ . ..+. ..+..++++| ||+.|++++.|
T Consensus 566 --~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~---------~-~~l~---~~v~~~~~S~-DG~~l~~~~~~- 628 (1045)
T 1k32_A 566 --ESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK---------V-TEVK---NNLTDLRLSA-DRKTVMVRKDD- 628 (1045)
T ss_dssp --SSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC---------E-EEEE---EEEEEEEECT-TSCEEEEEETT-
T ss_pred --CCCeEEEEecccCcccccccccCCCceEEEEECCCCc---------E-EEee---cCcceEEECC-CCCEEEEEcCC-
Confidence 89987875 1235678999998863 2 1121 5678899988 89999988876
Q ss_pred eEEEeeCC
Q 018858 342 VVKVYSIS 349 (349)
Q Consensus 342 ~i~iw~~~ 349 (349)
.|++||+.
T Consensus 629 ~i~~~d~~ 636 (1045)
T 1k32_A 629 GKIYTFPL 636 (1045)
T ss_dssp SCEEEEES
T ss_pred cEEEEeCc
Confidence 79999863
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.7e-23 Score=167.09 Aligned_cols=222 Identities=10% Similarity=0.112 Sum_probs=163.5
Q ss_pred EeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccC-CCcccceeeccCc-ccceEEEE
Q 018858 33 SSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM-PASWRPLESYNYN-KEEINQIV 110 (349)
Q Consensus 33 t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~-~~~v~~~~ 110 (349)
.++.|+.|++||+.+++.. .+..|...|.+++|+|++++|++++ ++.|++||+.+ ++.... ...+ ...+.+++
T Consensus 17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~---~~~~~~~~~~~~~ 91 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKV---DTGFATICNNDHG 91 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEEC---CCTTCCCBCSCCE
T ss_pred CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEe---ccccccccccceE
Confidence 4567899999999988765 4445788999999999999999987 78999999987 543322 2222 35688999
Q ss_pred EccCCCEEEEEc--CCCcEEEE--EcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCc
Q 018858 111 CNPKSSFLACAD--DGGDVKII--DIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPD 186 (349)
Q Consensus 111 ~~~~~~~l~~~~--~dg~i~i~--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (349)
|+|++++|++++ .++...+| ++.+++ ...+. ....+..++|+|
T Consensus 92 ~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~--~~~~~~~~~~sp------------------------------ 138 (297)
T 2ojh_A 92 ISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMT--KNLPSYWHGWSP------------------------------ 138 (297)
T ss_dssp ECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECC--SSSSEEEEEECT------------------------------
T ss_pred ECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEee--cCCCccceEECC------------------------------
Confidence 999999999988 33445555 544544 33343 233488889999
Q ss_pred ccccCCCCcEEE-EEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCc
Q 018858 187 ADMLDKTNKICV-VAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTA 265 (349)
Q Consensus 187 ~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 265 (349)
+++.|+ ++..++.+++|+++... .....+..|..
T Consensus 139 ------dg~~l~~~~~~~~~~~l~~~~~~~---------------------------------------~~~~~~~~~~~ 173 (297)
T 2ojh_A 139 ------DGKSFTYCGIRDQVFDIYSMDIDS---------------------------------------GVETRLTHGEG 173 (297)
T ss_dssp ------TSSEEEEEEEETTEEEEEEEETTT---------------------------------------CCEEECCCSSS
T ss_pred ------CCCEEEEEECCCCceEEEEEECCC---------------------------------------CcceEcccCCC
Confidence 777766 77789999999975310 12234455677
Q ss_pred ceEEEEEeeecCCccEEEEee-CCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCC----
Q 018858 266 AASCVAFSMFGERGKYLISGG-NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS---- 340 (349)
Q Consensus 266 ~i~~i~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---- 340 (349)
.+.++.|+ |++++|+.++ .|+.+++|++.... .....+..|...+..++|+| ++++|++++.+
T Consensus 174 ~~~~~~~s---~dg~~l~~~~~~~~~~~i~~~~~~~--------~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~ 241 (297)
T 2ojh_A 174 RNDGPDYS---PDGRWIYFNSSRTGQMQIWRVRVDG--------SSVERITDSAYGDWFPHPSP-SGDKVVFVSYDADVF 241 (297)
T ss_dssp CEEEEEEC---TTSSEEEEEECTTSSCEEEEEETTS--------SCEEECCCCSEEEEEEEECT-TSSEEEEEEEETTCC
T ss_pred ccccceEC---CCCCEEEEEecCCCCccEEEECCCC--------CCcEEEecCCcccCCeEECC-CCCEEEEEEcCCCCC
Confidence 89999999 8999887666 58999999986321 34455667778899999988 88888888765
Q ss_pred -------CeEEEeeCC
Q 018858 341 -------KVVKVYSIS 349 (349)
Q Consensus 341 -------g~i~iw~~~ 349 (349)
+.|++||+.
T Consensus 242 ~~~~~~~~~l~~~d~~ 257 (297)
T 2ojh_A 242 DHPRDLDVRVQLMDMD 257 (297)
T ss_dssp SCCSSEEEEEEEEETT
T ss_pred cccccCceEEEEEecC
Confidence 569999863
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-22 Score=168.48 Aligned_cols=270 Identities=7% Similarity=-0.019 Sum_probs=177.0
Q ss_pred EEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCC-CCeEEEEEecCCCEEEE-EeCCCeEEEEEccCCCccccee
Q 018858 20 CCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGN-GPVTSLCFKSGNEDIIY-VSSGKEVKSFDVHMPASWRPLE 97 (349)
Q Consensus 20 ~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~ 97 (349)
.++++++ +.++++++.++.|++||..+++.+..+..+. ..+..++|+|+++++++ ...++.|.+||+.+++....+.
T Consensus 4 g~~~~~~-~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 4 GPALKAG-HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCCTT-CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred cccccCC-CEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 3467776 7889999999999999999999888877543 25788999999987654 4568999999998764333322
Q ss_pred eccCc---ccceEEEEEccCCCEEEEEcCC------------CcEEEEEcCCceEe---ceeccccccceeEEEEccCCC
Q 018858 98 SYNYN---KEEINQIVCNPKSSFLACADDG------------GDVKIIDIRQHCLY---KSLRAGHSSICSSVQFIPWKP 159 (349)
Q Consensus 98 ~~~~~---~~~v~~~~~~~~~~~l~~~~~d------------g~i~i~d~~~~~~~---~~~~~~~~~~v~~~~~~~~~~ 159 (349)
.-... ...+..++|+|+++++++++.+ +.|.+||+.+++.. ..+. +...+.+++|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~s~--- 157 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP--MPRQVYLMRAAD--- 157 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE--CCSSCCCEEECT---
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc--CCCcccceeECC---
Confidence 11000 2337889999999999988865 89999999875433 2333 334678888988
Q ss_pred CCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCC-------------
Q 018858 160 WEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKP------------- 226 (349)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------------- 226 (349)
+++ +++++. .|.+||+.+++...........
T Consensus 158 ---------------------------------dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (349)
T 1jmx_B 158 ---------------------------------DGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFW 201 (349)
T ss_dssp ---------------------------------TSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCC
T ss_pred ---------------------------------CCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeee
Confidence 777 555543 4999999887665543322100
Q ss_pred ----------ccceeeeeccccEEEEee-------eeeecCceeeeeeeeecCCCcceEEEEEeeecC-CccEEEEeeCC
Q 018858 227 ----------LKGSQSTSKVNIRDAEME-------ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGE-RGKYLISGGND 288 (349)
Q Consensus 227 ----------~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~-~~~~l~s~~~d 288 (349)
....+++++++....... ..+... .... ...+..+...+..+.++ | ++++++++ +
T Consensus 202 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~s---p~dg~~l~~~--~ 274 (349)
T 1jmx_B 202 PHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKT-GKTH-TQEFADLTELYFTGLRS---PKDPNQIYGV--L 274 (349)
T ss_dssp CCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTT-CCEE-EEEEEECSSCEEEEEEC---SSCTTEEEEE--E
T ss_pred cCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccC-CcEE-ecccccCCCcceeeEec---CCCCCEEEEE--c
Confidence 112234443331110000 000000 0011 11122344567889999 8 99999888 8
Q ss_pred CeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 289 KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 289 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
+.|++||+.++ +.+.... ....+.+++|+| ++++|++++.++.|++||+.
T Consensus 275 ~~v~~~d~~~~---------~~~~~~~-~~~~~~~~~~s~-dg~~l~~~~~~~~v~v~d~~ 324 (349)
T 1jmx_B 275 NRLAKYDLKQR---------KLIKAAN-LDHTYYCVAFDK-KGDKLYLGGTFNDLAVFNPD 324 (349)
T ss_dssp SEEEEEETTTT---------EEEEEEE-CSSCCCEEEECS-SSSCEEEESBSSEEEEEETT
T ss_pred CeEEEEECccC---------eEEEEEc-CCCCccceEECC-CCCEEEEecCCCeEEEEecc
Confidence 89999999987 3333322 234567899988 78888888889999999973
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.92 E-value=4.5e-23 Score=188.49 Aligned_cols=280 Identities=11% Similarity=0.043 Sum_probs=182.9
Q ss_pred cCCCCeeeeCCce---eeeEEEEecCCCceEEEeCCC---------CcEEEEECCCCcEEEEee---cCCCCeEEEEEec
Q 018858 4 AEAKPRRLRGHKA---TATCCIASRDRPGFVASSGED---------GCICWFDLRSKDVQLVTD---VGNGPVTSLCFKS 68 (349)
Q Consensus 4 ~~~~~~~l~~h~~---~i~~~~~~~~~~~~l~t~~~d---------g~i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~ 68 (349)
+++..+.+.+|.. .|.+++|+|+ +++|++++.+ +.+++||+.+++. ..+. .|...+..++|+|
T Consensus 46 ~g~~~~~~~~~~~~~~~v~~~~~SpD-g~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SP 123 (723)
T 1xfd_A 46 TNTSTVLIEGKKIESLRAIRYEISPD-REYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGP 123 (723)
T ss_dssp GCCCEEEECTTTTTTTTCSEEEECTT-SSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCS
T ss_pred CCcEEEEeccccccccccceEEECCC-CCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECC
Confidence 4455566666654 4999999999 8888888654 7888999998876 3333 3444588899999
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCcccceeeccCccc------------------ceEEEEEccCCCEEEEEcCCC-----
Q 018858 69 GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKE------------------EINQIVCNPKSSFLACADDGG----- 125 (349)
Q Consensus 69 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~------------------~v~~~~~~~~~~~l~~~~~dg----- 125 (349)
+|+.|++++. +.|++||+.+++...... .+.. .+..++|+|||++|++++.++
T Consensus 124 dG~~la~~~~-~~i~~~~~~~g~~~~~~~---~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~ 199 (723)
T 1xfd_A 124 KGQQLIFIFE-NNIYYCAHVGKQAIRVVS---TGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPI 199 (723)
T ss_dssp STTCEEEEET-TEEEEESSSSSCCEEEEC---CCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCE
T ss_pred CCCEEEEEEC-CeEEEEECCCCceEEEec---CCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccce
Confidence 9999999986 789999998765432221 1112 237899999999999887543
Q ss_pred -----------------------------cEEEEEcCCceEeceecccc------ccceeEEEEccCCCCCCCCCCCCCC
Q 018858 126 -----------------------------DVKIIDIRQHCLYKSLRAGH------SSICSSVQFIPWKPWEGLPENNGNA 170 (349)
Q Consensus 126 -----------------------------~i~i~d~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~ 170 (349)
.|++||+.+++....+. .+ ...+..++|+|
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~-~~~~~~~~~~~~~~~~~Sp-------------- 264 (723)
T 1xfd_A 200 MELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMM-PPDDPRMREYYITMVKWAT-------------- 264 (723)
T ss_dssp EEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECC-CCCCGGGSSEEEEEEEESS--------------
T ss_pred EEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEee-CCccCCCccceeEEEEEeC--------------
Confidence 57777776665433333 22 44566667776
Q ss_pred ccccCCceeEEeecCcccccCCCCcEEEEEcC----CCeEEEEEccCceeeeecCCCCCCcc----ceeeeeccccEEEE
Q 018858 171 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKG----DGVVDVINIESELNISRSKSTTKPLK----GSQSTSKVNIRDAE 242 (349)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 242 (349)
+++++++... +..|++||+.+++............+ ..++|+|||+.++.
T Consensus 265 ----------------------Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~ 322 (723)
T 1xfd_A 265 ----------------------STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFF 322 (723)
T ss_dssp ----------------------SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEE
T ss_pred ----------------------CCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEE
Confidence 7888866543 35799999998776554332222222 47899999998876
Q ss_pred e-eeeee--------cCce--eeee---eeeecCCCcceEE-EEEeeecCCccEEEEeeCC---CeEEEEecCCCcceec
Q 018858 243 M-EILDQ--------SGGK--RLHL---DYSVGGHTAAASC-VAFSMFGERGKYLISGGND---KLVKVWDCSRFQGVQT 304 (349)
Q Consensus 243 ~-~~~~~--------~~~~--~~~~---~~~~~~h~~~i~~-i~~~~~~~~~~~l~s~~~d---~~i~vwd~~~~~~~~~ 304 (349)
. ...+. .... .... ...+..+...+.. +.|+ |+|++|+..+.+ +.+++|++.....
T Consensus 323 ~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~s---pdg~~l~~~~~~~~~~~~~l~~~~~~~~--- 396 (723)
T 1xfd_A 323 IRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYD---EKGNKIYFLSTEDLPRRRQLYSANTVGN--- 396 (723)
T ss_dssp EEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEE---TTTTEEEEEESSSCTTCCEEEEECSSTT---
T ss_pred EEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEc---CCCCEEEEEEcCCCCcceEEEEEeCCCC---
Confidence 4 32222 0000 1111 2333333334444 6899 899998766554 7899999875321
Q ss_pred ccccceeeeccc---cccceEEEEeecCCCCcEEEe
Q 018858 305 SINNDLLIKNIN---LNKKVNWLCTTPTESENLVVC 337 (349)
Q Consensus 305 ~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~ 337 (349)
.....+.. |...+..++|+| ++++|+..
T Consensus 397 ----~~~~~l~~~~~~~~~~~~~~~sp-dg~~l~~~ 427 (723)
T 1xfd_A 397 ----FNRQCLSCDLVENCTYFSASFSH-SMDFFLLK 427 (723)
T ss_dssp ----CCCBCSSTTSSSSCCCCEEEECT-TSSEEEEE
T ss_pred ----CCcceecccccCCCCeEEEEECC-CCCEEEEE
Confidence 01112222 566788999988 77766654
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.4e-22 Score=163.40 Aligned_cols=247 Identities=11% Similarity=0.068 Sum_probs=167.6
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEE-EeCCCCcEEEEECCCCcE-EEEeecCCCCeEEEEEecCCCEEEEEeCCC-
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVA-SSGEDGCICWFDLRSKDV-QLVTDVGNGPVTSLCFKSGNEDIIYVSSGK- 80 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~-t~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg- 80 (349)
+++....+..+...+ +++|+|+ +++++ ++..++.|.+||..+++. ...+..+..+..+++|+|++++++++..++
T Consensus 29 ~~~~~~~~~~~~~~~-~~~~s~d-g~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~ 106 (331)
T 3u4y_A 29 TLEILNQITLGYDFV-DTAITSD-CSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNH 106 (331)
T ss_dssp TCCEEEEEECCCCEE-EEEECSS-SCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSS
T ss_pred ccceeeeEEccCCcc-eEEEcCC-CCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCC
Confidence 456666777666777 9999999 66554 555589999999999887 777777777666699999999999555442
Q ss_pred --eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEE-cCCCc-EEEEEcCCceEe-----ceeccccccceeE
Q 018858 81 --EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACA-DDGGD-VKIIDIRQHCLY-----KSLRAGHSSICSS 151 (349)
Q Consensus 81 --~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~-i~i~d~~~~~~~-----~~~~~~~~~~v~~ 151 (349)
.|.+||+++++.... +.. .....+++|+|++++++++ ..++. |.+|++.....+ ..+. .......
T Consensus 107 ~~~i~v~d~~~~~~~~~---~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~--~~~~~~~ 180 (331)
T 3u4y_A 107 PFNMQSYSFLKNKFIST---IPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFIS--GGTRPFN 180 (331)
T ss_dssp SCEEEEEETTTTEEEEE---EEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEEC--SSSSEEE
T ss_pred cccEEEEECCCCCeEEE---EEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCcccc--CCCCccc
Confidence 899999987644332 322 3456899999999865544 55588 999998743222 1222 3345678
Q ss_pred EEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEE-EEEcCCCeEEEEEccCcee---eeecCCCCCCc
Q 018858 152 VQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC-VVAKGDGVVDVINIESELN---ISRSKSTTKPL 227 (349)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~ 227 (349)
++|+| +++++ +++..++.|.+||+.+++. ..... ....
T Consensus 181 ~~~sp------------------------------------dg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~--~~~~ 222 (331)
T 3u4y_A 181 ITFTP------------------------------------DGNFAFVANLIGNSIGILETQNPENITLLNAVG--TNNL 222 (331)
T ss_dssp EEECT------------------------------------TSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE--CSSC
T ss_pred eEECC------------------------------------CCCEEEEEeCCCCeEEEEECCCCcccceeeecc--CCCC
Confidence 88888 78755 4555789999999988765 44333 2356
Q ss_pred cceeeeeccccEEEEeeeeeecCc------eeeeeeeeecCC----Cc---ceEEEEEeeecCCccEEEEee-CCCeEEE
Q 018858 228 KGSQSTSKVNIRDAEMEILDQSGG------KRLHLDYSVGGH----TA---AASCVAFSMFGERGKYLISGG-NDKLVKV 293 (349)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~h----~~---~i~~i~~~~~~~~~~~l~s~~-~d~~i~v 293 (349)
...++|+|+|+++++....+..+. .....+..+..+ .. ....++|+ |++++|++++ .++.|++
T Consensus 223 ~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---pdg~~l~v~~~~~~~v~v 299 (331)
T 3u4y_A 223 PGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALN---KTETKLFISANISRELKV 299 (331)
T ss_dssp CCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEEC---TTSSEEEEEETTTTEEEE
T ss_pred CceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEEC---CCCCEEEEecCCCCcEEE
Confidence 678999999998765432221111 111112222211 12 22558999 8999886555 5679999
Q ss_pred EecCCC
Q 018858 294 WDCSRF 299 (349)
Q Consensus 294 wd~~~~ 299 (349)
||+...
T Consensus 300 ~d~~~~ 305 (331)
T 3u4y_A 300 FTISGK 305 (331)
T ss_dssp EETTSC
T ss_pred EEecCC
Confidence 999874
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-22 Score=167.01 Aligned_cols=266 Identities=9% Similarity=0.054 Sum_probs=175.4
Q ss_pred CCceeeeEEEEecCCCceEEEeCCC-CcEEEEECC--CCcE--EEEeecCCCCeEEEEEecCCCEEEEEeC-CCeEEEEE
Q 018858 13 GHKATATCCIASRDRPGFVASSGED-GCICWFDLR--SKDV--QLVTDVGNGPVTSLCFKSGNEDIIYVSS-GKEVKSFD 86 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~t~~~d-g~i~vwd~~--~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd 86 (349)
.|...+.+++|+|+ +++|++++.+ +.|.+|++. +++. +..+..+. .+..++|+|+++++++++. ++.|.+||
T Consensus 35 ~~~~~~~~~~~spd-g~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d 112 (343)
T 1ri6_A 35 DVPGQVQPMVVSPD-KRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTR 112 (343)
T ss_dssp ECSSCCCCEEECTT-SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ecCCCCceEEECCC-CCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEE
Confidence 46778899999998 7877777765 999999997 5553 44555444 7889999999998877765 78999999
Q ss_pred ccCCCcccceeeccCcccceEEEEEccCCCEEEEEc-CCCcEEEEEcCC-ceEec----eeccccccceeEEEEccCCCC
Q 018858 87 VHMPASWRPLESYNYNKEEINQIVCNPKSSFLACAD-DGGDVKIIDIRQ-HCLYK----SLRAGHSSICSSVQFIPWKPW 160 (349)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~-~~~~~----~~~~~~~~~v~~~~~~~~~~~ 160 (349)
+..+.....+..... ...+.+++|+|+++++++++ .++.|++||+.+ ++... .+.......+..++|+|
T Consensus 113 ~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p---- 187 (343)
T 1ri6_A 113 LEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHP---- 187 (343)
T ss_dssp EETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECT----
T ss_pred CCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECC----
Confidence 953322333344333 24588899999999887776 889999999987 54432 22212334677888988
Q ss_pred CCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEE-EEcCCCeEEEEEccC--cee--eeec---CCC--CCCccce
Q 018858 161 EGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV-VAKGDGVVDVINIES--ELN--ISRS---KST--TKPLKGS 230 (349)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~i~d~~~--~~~--~~~~---~~~--~~~~~~~ 230 (349)
++++++ ++..++.|.+|++.. ++. .... ... .......
T Consensus 188 --------------------------------dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 235 (343)
T 1ri6_A 188 --------------------------------NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAAD 235 (343)
T ss_dssp --------------------------------TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEE
T ss_pred --------------------------------CCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccc
Confidence 777665 445889999999954 221 1111 111 1234457
Q ss_pred eeeeccccEEEEeeeeeecC--------ceeeeeeeeecCCCcceEEEEEeeecCCccEEEEee-CCCeEEEEecC--CC
Q 018858 231 QSTSKVNIRDAEMEILDQSG--------GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG-NDKLVKVWDCS--RF 299 (349)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~-~d~~i~vwd~~--~~ 299 (349)
++|+|+|+++++....+..+ ......+..+..+.. +..++|+ |++++|++++ .++.|.+|+++ ++
T Consensus 236 i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s---~dg~~l~~~~~~~~~v~v~~~d~~~g 311 (343)
T 1ri6_A 236 IHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVD---HSGKYLIAAGQKSHHISVYEIVGEQG 311 (343)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEEC---TTSSEEEEECTTTCEEEEEEEETTTT
T ss_pred eEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEEC---CCCCEEEEecCCCCeEEEEEEcCCCc
Confidence 99999999887543222111 112233344444444 7899999 8999888877 68999999655 43
Q ss_pred cceecccccceeeeccccccceEEEEeecC
Q 018858 300 QGVQTSINNDLLIKNINLNKKVNWLCTTPT 329 (349)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 329 (349)
+. ..+.... ......+++|.+.
T Consensus 312 ~~-------~~~~~~~-~g~~p~~i~~~~~ 333 (343)
T 1ri6_A 312 LL-------HEKGRYA-VGQGPMWVVVNAH 333 (343)
T ss_dssp EE-------EEEEEEE-CSSSCCEEEEEEE
T ss_pred ee-------eEccccc-cCCCCeeEEEEcc
Confidence 21 1222221 2245667777763
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.91 E-value=4.5e-23 Score=176.17 Aligned_cols=217 Identities=14% Similarity=0.103 Sum_probs=155.3
Q ss_pred CcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCc-------ccceee-----ccCcccc
Q 018858 38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPAS-------WRPLES-----YNYNKEE 105 (349)
Q Consensus 38 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-------~~~~~~-----~~~~~~~ 105 (349)
+.+++|+... . .+...+..+++++++.++++++.++ +++|+...... ...+.. ...+...
T Consensus 23 ~~vri~~~~~-~------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 2oit_A 23 KKVRIFDSPE-E------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP 94 (434)
T ss_dssp CEEECSCCCS-S------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred eeEEecCCcc-c------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence 4577876431 1 1344678899999999999999888 89987642100 000100 0113457
Q ss_pred eEEEEEccCCCEEE----EEcCCCcEEEEEcCCc--------eE---eceeccccccceeEEEEccCCCCCCCCCCCCCC
Q 018858 106 INQIVCNPKSSFLA----CADDGGDVKIIDIRQH--------CL---YKSLRAGHSSICSSVQFIPWKPWEGLPENNGNA 170 (349)
Q Consensus 106 v~~~~~~~~~~~l~----~~~~dg~i~i~d~~~~--------~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 170 (349)
|.+++|+|++++|+ +|+.|+.|++||++++ +. +..+. +|...|.+++|+|+
T Consensus 95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~~p~------------- 160 (434)
T 2oit_A 95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLK-DAGGMVIDMKWNPT------------- 160 (434)
T ss_dssp EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCC-SGGGSEEEEEECSS-------------
T ss_pred ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccC-CCCCceEEEEECCC-------------
Confidence 99999999999999 7889999999998754 11 34455 68899999999993
Q ss_pred ccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecC
Q 018858 171 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG 250 (349)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (349)
++.+|++++.||.|++||++++
T Consensus 161 ----------------------~~~~las~s~Dg~v~iwD~~~~------------------------------------ 182 (434)
T 2oit_A 161 ----------------------VPSMVAVCLADGSIAVLQVTET------------------------------------ 182 (434)
T ss_dssp ----------------------CTTEEEEEETTSCEEEEEESSS------------------------------------
T ss_pred ----------------------CCCEEEEEECCCeEEEEEcCCC------------------------------------
Confidence 3789999999999999999974
Q ss_pred ceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeec----cccccceEEEEe
Q 018858 251 GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKN----INLNKKVNWLCT 326 (349)
Q Consensus 251 ~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~ 326 (349)
.......+|...|++++|+ |+|++|++|+.||.|++||++ ++... .+... ..|...+.+++|
T Consensus 183 ----~~~~~~~~~~~~v~~v~ws---pdg~~lasgs~dg~v~iwd~~-~~~~~------~~~~~~~~~~~~~~~v~~v~w 248 (434)
T 2oit_A 183 ----VKVCATLPSTVAVTSVCWS---PKGKQLAVGKQNGTVVQYLPT-LQEKK------VIPCPPFYESDHPVRVLDVLW 248 (434)
T ss_dssp ----EEEEEEECGGGCEEEEEEC---TTSSCEEEEETTSCEEEECTT-CCEEE------EECCCTTCCTTSCEEEEEEEE
T ss_pred ----cceeeccCCCCceeEEEEc---CCCCEEEEEcCCCcEEEEccC-Ccccc------cccCCcccCCCCceeEEEEEE
Confidence 2223345688899999999 899999999999999999998 32111 11111 124458999999
Q ss_pred ecCCCCcEEEe-eCCC------eEEEeeCC
Q 018858 327 TPTESENLVVC-DTSK------VVKVYSIS 349 (349)
Q Consensus 327 ~~~~~~~l~~~-~~dg------~i~iw~~~ 349 (349)
++ ++.++++. +.|| .+++|+++
T Consensus 249 ~~-~~~~l~~~~~~dg~~~~~~~v~i~~l~ 277 (434)
T 2oit_A 249 IG-TYVFAIVYAAADGTLETSPDVVMALLP 277 (434)
T ss_dssp EE-TTEEEEEEEETTCCSSSCCEEEEEECC
T ss_pred ec-CceEEEEEccCCCccCCCCceEEEEec
Confidence 88 55555443 3443 38899874
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.91 E-value=4.3e-23 Score=183.87 Aligned_cols=232 Identities=11% Similarity=-0.025 Sum_probs=169.4
Q ss_pred ceeeeEEEEecCCCceEEEeCC-CCcEEEEECCCCcEEEEeecCC-CCeEEEEEecCCCEEEEEeC---CCeEEEEEccC
Q 018858 15 KATATCCIASRDRPGFVASSGE-DGCICWFDLRSKDVQLVTDVGN-GPVTSLCFKSGNEDIIYVSS---GKEVKSFDVHM 89 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~-dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~ 89 (349)
..+|.+++|+|| |+.|++++. ||++.||+++.++.. .+..+. ..+..++|+|+ +.+++++. +....+|.+..
T Consensus 21 ~~~~~~~~~~~D-G~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 21 AVEKYSLQGVVD-GDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp HSCEEEEEEEET-TTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEET
T ss_pred ccchheeecCCC-CCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEec
Confidence 567999999999 888888776 999999998666554 444444 68999999999 77777665 45556665543
Q ss_pred --CCcccceeeccCcccceEEEEEccCCCE-EEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCC
Q 018858 90 --PASWRPLESYNYNKEEINQIVCNPKSSF-LACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPEN 166 (349)
Q Consensus 90 --~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 166 (349)
......+... ......+|+|+++. +++.+.++.+.+||+.+++...... +.. .+++|+|
T Consensus 98 ~~~g~~~~l~~~----~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~--~~~--~~~~~sp---------- 159 (582)
T 3o4h_A 98 SRPGEEQRLEAV----KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR--LPG--FGFVSDI---------- 159 (582)
T ss_dssp TSTTCCEECTTS----CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE--ESS--CEEEEEE----------
T ss_pred cCCCccccccCC----CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec--CCC--ceEEECC----------
Confidence 2112222221 23446688888853 3333344556699999887655444 222 7888999
Q ss_pred CCCCccccCCceeEEeecCcccccCCCCcEEEEEcCC----CeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEE
Q 018858 167 NGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD----GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE 242 (349)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (349)
+|+.++.++.+ +.|++||+.++
T Consensus 160 --------------------------DG~~la~~~~~~~~~~~i~~~d~~~g---------------------------- 185 (582)
T 3o4h_A 160 --------------------------RGDLIAGLGFFGGGRVSLFTSNLSSG---------------------------- 185 (582)
T ss_dssp --------------------------ETTEEEEEEEEETTEEEEEEEETTTC----------------------------
T ss_pred --------------------------CCCEEEEEEEcCCCCeEEEEEcCCCC----------------------------
Confidence 89999987766 78999998864
Q ss_pred eeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCC--eEEEEecCCCcceecccccceeeeccccccc
Q 018858 243 MEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDK--LVKVWDCSRFQGVQTSINNDLLIKNINLNKK 320 (349)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (349)
....+..|...+..++|+ |||++|+++..++ .|++||+.++ ... ....|...
T Consensus 186 -------------~~~~l~~~~~~~~~~~~S---pDG~~l~~~~~~~~~~i~~~d~~~~---------~~~-~~~~~~~~ 239 (582)
T 3o4h_A 186 -------------GLRVFDSGEGSFSSASIS---PGMKVTAGLETAREARLVTVDPRDG---------SVE-DLELPSKD 239 (582)
T ss_dssp -------------CCEEECCSSCEEEEEEEC---TTSCEEEEEECSSCEEEEEECTTTC---------CEE-ECCCSCSH
T ss_pred -------------CceEeecCCCccccceEC---CCCCEEEEccCCCeeEEEEEcCCCC---------cEE-EccCCCcC
Confidence 223566788889999999 9999999888888 8999999987 333 55566666
Q ss_pred eEEEE--------eecCCCCcEEEeeCCCeEEEeeC
Q 018858 321 VNWLC--------TTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 321 v~~~~--------~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
+..++ |+| ||.++++++.|+.+++|++
T Consensus 240 ~~~~~~~~~~~~~~sp-dg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 240 FSSYRPTAITWLGYLP-DGRLAVVARREGRSAVFID 274 (582)
T ss_dssp HHHHCCSEEEEEEECT-TSCEEEEEEETTEEEEEET
T ss_pred hhhhhhccccceeEcC-CCcEEEEEEcCCcEEEEEE
Confidence 66666 988 7788888999999999985
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.91 E-value=6e-21 Score=159.90 Aligned_cols=249 Identities=14% Similarity=0.193 Sum_probs=166.4
Q ss_pred CceeeeEEEEecCCCceEEEeCCC----CcEEEEECCC--CcE--EEEeecCCCCeEEEEEecCCCEEEEEe-CCCeEEE
Q 018858 14 HKATATCCIASRDRPGFVASSGED----GCICWFDLRS--KDV--QLVTDVGNGPVTSLCFKSGNEDIIYVS-SGKEVKS 84 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~d----g~i~vwd~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i 84 (349)
|......++|+|+ +++|++++.+ +.|.+|++.. ++. +.....+......+++ ++++|++++ .++.|.+
T Consensus 48 ~~~~p~~l~~spd-g~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~ 124 (361)
T 3scy_A 48 EVANPSYLIPSAD-GKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITV 124 (361)
T ss_dssp ECSCCCSEEECTT-SSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEE
T ss_pred cCCCCceEEECCC-CCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEE
Confidence 5566778999998 7888888775 7999998865 433 3344445566777777 788887776 5789999
Q ss_pred EEccCCCcccceee---cc--------CcccceEEEEEccCCCEEEEEc-CCCcEEEEEcCCceE------e------ce
Q 018858 85 FDVHMPASWRPLES---YN--------YNKEEINQIVCNPKSSFLACAD-DGGDVKIIDIRQHCL------Y------KS 140 (349)
Q Consensus 85 wd~~~~~~~~~~~~---~~--------~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~------~------~~ 140 (349)
|++........+.. .. .+...+.+++|+|+++++++++ .++.|++|++..... + ..
T Consensus 125 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~ 204 (361)
T 3scy_A 125 FPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEA 204 (361)
T ss_dssp EEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEE
T ss_pred EEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccc
Confidence 99975433222211 11 1123457899999998665544 578999999874331 1 11
Q ss_pred eccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEc-CCCeEEEEEccCceeeee
Q 018858 141 LRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESELNISR 219 (349)
Q Consensus 141 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~ 219 (349)
........+..++|+| +++++++++ .++.|.+|++.++...
T Consensus 205 ~~~~~~~~~~~~~~sp------------------------------------dg~~l~v~~~~~~~v~v~~~~~g~~~-- 246 (361)
T 3scy_A 205 FKVAPGSGPRHLIFNS------------------------------------DGKFAYLINEIGGTVIAFRYADGMLD-- 246 (361)
T ss_dssp EECCTTCCEEEEEECT------------------------------------TSSEEEEEETTTCEEEEEEEETTEEE--
T ss_pred eecCCCCCCeEEEEcC------------------------------------CCCEEEEEcCCCCeEEEEEecCCceE--
Confidence 1112345567888888 788776666 6899999999864210
Q ss_pred cCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeC--CCeEEEEecC
Q 018858 220 SKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN--DKLVKVWDCS 297 (349)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~--d~~i~vwd~~ 297 (349)
....+.....+......++|+ |+|++|+++.. ++.|.+|++.
T Consensus 247 ---------------------------------~~~~~~~~~~~~~~~~~i~~s---pdg~~l~v~~~~~~~~i~v~~~~ 290 (361)
T 3scy_A 247 ---------------------------------EIQTVAADTVNAQGSGDIHLS---PDGKYLYASNRLKADGVAIFKVD 290 (361)
T ss_dssp ---------------------------------EEEEEESCSSCCCCEEEEEEC---TTSSEEEEEECSSSCEEEEEEEC
T ss_pred ---------------------------------EeEEEecCCCCCCCcccEEEC---CCCCEEEEECCCCCCEEEEEEEc
Confidence 001122233344456899999 99999877665 4899999996
Q ss_pred C--CcceecccccceeeeccccccceEEEEeecCCCCcEEEee-CCCeEEEeeC
Q 018858 298 R--FQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD-TSKVVKVYSI 348 (349)
Q Consensus 298 ~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iw~~ 348 (349)
. ++. ..+..... ...+..++|+| ++++|++++ .++.|.+|++
T Consensus 291 ~~~g~~-------~~~~~~~~-g~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~ 335 (361)
T 3scy_A 291 ETNGTL-------TKVGYQLT-GIHPRNFIITP-NGKYLLVACRDTNVIQIFER 335 (361)
T ss_dssp TTTCCE-------EEEEEEEC-SSCCCEEEECT-TSCEEEEEETTTTEEEEEEE
T ss_pred CCCCcE-------EEeeEecC-CCCCceEEECC-CCCEEEEEECCCCCEEEEEE
Confidence 3 321 12222222 45678899988 888888887 6799999764
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-21 Score=165.97 Aligned_cols=291 Identities=12% Similarity=0.062 Sum_probs=187.3
Q ss_pred ccCCCCeeeeCCceeeeE-----EEEecCCCceEEEeCC-CC--cEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEE
Q 018858 3 DAEAKPRRLRGHKATATC-----CIASRDRPGFVASSGE-DG--CICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDII 74 (349)
Q Consensus 3 ~~~~~~~~l~~h~~~i~~-----~~~~~~~~~~l~t~~~-dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 74 (349)
.++..++.|..|...... .+|+|+ +++|+.++. +| .|.+||+.+++.......+...+..++|+|+++.|+
T Consensus 18 ~~g~~~~~lt~~~~~~~~~~~~~~~~SpD-g~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~ 96 (388)
T 3pe7_A 18 STGAQVTRLTPPDVTCHRNYFYQKCFTRD-GSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALF 96 (388)
T ss_dssp TTCCEEEECSCTTSCEECCCTTSCCBCTT-SCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEE
T ss_pred CCCcceEEecCCcccccchhhcCccCCCC-CCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEE
Confidence 456778888888766665 789999 787777766 66 488889998887776666665655678999999999
Q ss_pred EEeCCCeEEEEEccCCCcccceeeccCcccceEEE--EEccCCCEEEEE----------------------cCCCcEEEE
Q 018858 75 YVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQI--VCNPKSSFLACA----------------------DDGGDVKII 130 (349)
Q Consensus 75 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~~~----------------------~~dg~i~i~ 130 (349)
.++.++.|++||+.+++.... ... +...+... .++|++.+++.. ..+..|++|
T Consensus 97 ~~~~~~~l~~~d~~~g~~~~~-~~~--~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 173 (388)
T 3pe7_A 97 YVKDGRNLMRVDLATLEENVV-YQV--PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRV 173 (388)
T ss_dssp EEETTTEEEEEETTTCCEEEE-EEC--CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEE
T ss_pred EEeCCCeEEEEECCCCcceee-eec--hhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEE
Confidence 999999999999998754322 222 22333333 348899888742 234679999
Q ss_pred EcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcC------CC
Q 018858 131 DIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG------DG 204 (349)
Q Consensus 131 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------dg 204 (349)
|+.+++...... +...+..++|+|. +++.|+.... ..
T Consensus 174 d~~~g~~~~l~~--~~~~~~~~~~sp~-----------------------------------dg~~l~~~~~~~~~~~~~ 216 (388)
T 3pe7_A 174 DLKTGESTVILQ--ENQWLGHPIYRPY-----------------------------------DDSTVAFCHEGPHDLVDA 216 (388)
T ss_dssp ETTTCCEEEEEE--ESSCEEEEEEETT-----------------------------------EEEEEEEEECSCTTTSSC
T ss_pred ECCCCceEEeec--CCccccccEECCC-----------------------------------CCCEEEEEEecCCCCCcc
Confidence 999887544433 5567888999982 3566665544 33
Q ss_pred eEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCc----------eeeeeeeeecCCCcc---eEEEE
Q 018858 205 VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG----------KRLHLDYSVGGHTAA---ASCVA 271 (349)
Q Consensus 205 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~h~~~---i~~i~ 271 (349)
.|.++|.................+..++|+|||+.+++....+.... .....+..+.++... ...+.
T Consensus 217 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~ 296 (388)
T 3pe7_A 217 RMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSL 296 (388)
T ss_dssp SEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSE
T ss_pred eEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCe
Confidence 78888877654433333222234667899999998876443221110 011122222221000 11235
Q ss_pred EeeecCCccEEEEe---------eCCCeEEEEecCCCcceecccccceeeecccccc-----------ceEEEEeecCCC
Q 018858 272 FSMFGERGKYLISG---------GNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK-----------KVNWLCTTPTES 331 (349)
Q Consensus 272 ~~~~~~~~~~l~s~---------~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~ 331 (349)
|+ |||+.|+.. ..+..|++||+.+++. ..+..+.. .+..++|+| ||
T Consensus 297 ~s---pdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~----------~~l~~~~~~~~~~~~~~~~~~~~~~~sp-Dg 362 (388)
T 3pe7_A 297 MV---GDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ----------HRVARHDTSWKVFEGDRQVTHPHPSFTP-DD 362 (388)
T ss_dssp EE---EEECCC------------CCCCEEEEEETTTTEE----------EEEEECCCCCCCBTTBSSTTCCCCEECT-TS
T ss_pred Ec---cCCCcceeEeeeccccccCCCCEEEEEeccCCce----------EEeccccCcccccccccccCCCCccCCC-CC
Confidence 78 899887754 4567899999998632 22333333 467789988 88
Q ss_pred CcEEEee-CCCeEEEeeC
Q 018858 332 ENLVVCD-TSKVVKVYSI 348 (349)
Q Consensus 332 ~~l~~~~-~dg~i~iw~~ 348 (349)
+.|+.++ .+|...||.+
T Consensus 363 ~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 363 KQILFTSDVHGKPALYLA 380 (388)
T ss_dssp SEEEEEECTTSSCEEEEE
T ss_pred CEEEEEecCCCceeEEEE
Confidence 7777665 5777777754
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=9.2e-22 Score=179.32 Aligned_cols=270 Identities=8% Similarity=-0.033 Sum_probs=174.9
Q ss_pred eeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEE-EEeecCC-----------------CCeEEEEEecCCCEEEEEeC
Q 018858 17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQ-LVTDVGN-----------------GPVTSLCFKSGNEDIIYVSS 78 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~-~~~~~~~-----------------~~v~~~~~~~~~~~l~~~~~ 78 (349)
.+..+.|. . + .+++++.++ | +||+.+++.+ ..+..+. ..|.+++|+|+ +.++.+.
T Consensus 27 ~~~~~~w~-g-~-~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~- 99 (706)
T 2z3z_A 27 YVVGLQWM-G-D-NYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT- 99 (706)
T ss_dssp -CTTCEEE-T-T-EEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-
T ss_pred cCCCCcCc-C-C-eEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-
Confidence 35567787 3 4 455556677 8 9999988762 3333222 56999999999 6666664
Q ss_pred CCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCC-----ceEeceeccccccc-----
Q 018858 79 GKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ-----HCLYKSLRAGHSSI----- 148 (349)
Q Consensus 79 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~~~~~~----- 148 (349)
++.|++||+.+++.. .+..+...+..++|+|+|++|+++ .++.|++||+.+ ++...... .+...
T Consensus 100 ~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~-~~~~~~~~g~ 173 (706)
T 2z3z_A 100 QGGLVGFDMLARKVT----YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTI-DGTETLVYGQ 173 (706)
T ss_dssp TTEEEEEETTTTEEE----EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCS-CCBTTEEESS
T ss_pred CCEEEEEECCCCceE----EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEecc-CCCCCeEccc
Confidence 599999999875322 122234568889999999999985 678999999988 76654443 22222
Q ss_pred ---------eeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEc------------------
Q 018858 149 ---------CSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK------------------ 201 (349)
Q Consensus 149 ---------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------------------ 201 (349)
+.++.|+| ++++|++++
T Consensus 174 ~~~~ee~~~~~~~~~Sp------------------------------------Dg~~la~~~~d~~~~~~~~~~~~~~~~ 217 (706)
T 2z3z_A 174 AVHQREFGIEKGTFWSP------------------------------------KGSCLAFYRMDQSMVKPTPIVDYHPLE 217 (706)
T ss_dssp CCGGGCTTCCCSEEECT------------------------------------TSSEEEEEEEECTTSCCEEEEECCSSS
T ss_pred chhhhhcCCCceEEECC------------------------------------CCCEEEEEEECCCCCceEEeeccCCCC
Confidence 47788888 677777765
Q ss_pred ---------------CCCeEEEEEccCceeeeecCC-CCCCccceeeeeccccEEEEeeeee------ec--Cceeeeee
Q 018858 202 ---------------GDGVVDVINIESELNISRSKS-TTKPLKGSQSTSKVNIRDAEMEILD------QS--GGKRLHLD 257 (349)
Q Consensus 202 ---------------~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~~ 257 (349)
.+..|.+||+.+++....... .....+..++|+|||+.+++..... .. ........
T Consensus 218 ~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~ 297 (706)
T 2z3z_A 218 AESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFV 297 (706)
T ss_dssp CEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEE
T ss_pred CceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCcee
Confidence 446899999998775544332 3445678999999999888633211 00 00011011
Q ss_pred eeec--CCCc---ceEEEEEeeecC--CccEEEEeeCCCeEEEEecC-CCcceecccccceeeeccccccceEE-EEeec
Q 018858 258 YSVG--GHTA---AASCVAFSMFGE--RGKYLISGGNDKLVKVWDCS-RFQGVQTSINNDLLIKNINLNKKVNW-LCTTP 328 (349)
Q Consensus 258 ~~~~--~h~~---~i~~i~~~~~~~--~~~~l~s~~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~ 328 (349)
..+. .+.. .+..+.|+ | +|+++++++.|+.++||++. .+ ..+..+..+...+.. ++|+|
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~s---p~~dg~~l~~~~~~g~~~l~~~~~~~---------~~~~~l~~~~~~v~~~~~~sp 365 (706)
T 2z3z_A 298 RTLFVETDKHYVEPLHPLTFL---PGSNNQFIWQSRRDGWNHLYLYDTTG---------RLIRQVTKGEWEVTNFAGFDP 365 (706)
T ss_dssp EEEEEEECSSCCCCCSCCEEC---TTCSSEEEEEECTTSSCEEEEEETTS---------CEEEECCCSSSCEEEEEEECT
T ss_pred eEEEEccCCCeECccCCceee---cCCCCEEEEEEccCCccEEEEEECCC---------CEEEecCCCCeEEEeeeEEcC
Confidence 1111 1111 24678899 9 99999999999999999886 33 344555667777776 78988
Q ss_pred CCCCcEEEee-CCC----eEEEeeC
Q 018858 329 TESENLVVCD-TSK----VVKVYSI 348 (349)
Q Consensus 329 ~~~~~l~~~~-~dg----~i~iw~~ 348 (349)
+++.|+.++ .++ .|+.|++
T Consensus 366 -dg~~l~~~~~~~~~~~~~l~~~d~ 389 (706)
T 2z3z_A 366 -KGTRLYFESTEASPLERHFYCIDI 389 (706)
T ss_dssp -TSSEEEEEESSSCTTCBEEEEEET
T ss_pred -CCCEEEEEecCCCCceEEEEEEEc
Confidence 777666554 444 5666664
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.5e-22 Score=180.66 Aligned_cols=271 Identities=10% Similarity=0.013 Sum_probs=178.8
Q ss_pred EEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCC---CeEEEEEecCCCEEEEEeC---------CCeEEEEEc
Q 018858 20 CCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNG---PVTSLCFKSGNEDIIYVSS---------GKEVKSFDV 87 (349)
Q Consensus 20 ~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~---------dg~i~iwd~ 87 (349)
.++|+|+ +++++++ .|+.|++||+.+++....+..+.. .+.+++|||+|++|++++. ++.|++||+
T Consensus 20 ~~~~s~d-g~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 20 FPNWISG-QEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCEESSS-SEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred ccEECCC-CeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence 6799998 6666655 589999999999998777765543 4889999999999999876 689999999
Q ss_pred cCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccce-----------------e
Q 018858 88 HMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSIC-----------------S 150 (349)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v-----------------~ 150 (349)
.+++.... ..+ ...+..++|+|||+.|+.+. ++.|++||+.+++.......++...+ .
T Consensus 98 ~~g~~~~~-~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~ 172 (719)
T 1z68_A 98 SNGEFVRG-NEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKY 172 (719)
T ss_dssp TTTEECCS-SCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSC
T ss_pred CCCccccc-eec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcc
Confidence 87643110 111 24578899999999999885 67999999988766443221222212 4
Q ss_pred EEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCC--------------------------
Q 018858 151 SVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG-------------------------- 204 (349)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-------------------------- 204 (349)
+++|+| +|+.|++++.|.
T Consensus 173 ~~~wSP------------------------------------DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~ 216 (719)
T 1z68_A 173 ALWWSP------------------------------------NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPK 216 (719)
T ss_dssp CEEECT------------------------------------TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCB
T ss_pred cEEECC------------------------------------CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCC
Confidence 788888 677777665431
Q ss_pred --------eEEEEEccCceee---eecC----CCCCCccceeeeeccccEEEEeeeee-----ec--C----ceeeeeee
Q 018858 205 --------VVDVINIESELNI---SRSK----STTKPLKGSQSTSKVNIRDAEMEILD-----QS--G----GKRLHLDY 258 (349)
Q Consensus 205 --------~i~i~d~~~~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--~----~~~~~~~~ 258 (349)
.|++||+.+++.. .... ......+..++|+||++.+++..... .. . ....+...
T Consensus 217 ~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~ 296 (719)
T 1z68_A 217 AGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPK 296 (719)
T ss_dssp TTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCG
T ss_pred CCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEE
Confidence 7889999876542 1111 12344567899999987665421110 11 1 11122222
Q ss_pred ee----cCCCcceE-----EEEEeeecCCccEEEE--eeCCC--eEEEEecCCCcceecccccceeeeccccccceEEEE
Q 018858 259 SV----GGHTAAAS-----CVAFSMFGERGKYLIS--GGNDK--LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLC 325 (349)
Q Consensus 259 ~~----~~h~~~i~-----~i~~~~~~~~~~~l~s--~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 325 (349)
.+ .+|...+. .+.|+ |||+.++. +..++ .|++||+.++ . ...+..+...+..+.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~s---pdg~~l~~~~~~~~g~~~l~~~~~~~~---------~-~~~lt~~~~~v~~~~ 363 (719)
T 1z68_A 297 TQEHIEESRTGWAGGFFVSTPVFS---YDAISYYKIFSDKDGYKHIHYIKDTVE---------N-AIQITSGKWEAINIF 363 (719)
T ss_dssp GGEEEEECSSSCSSSSSCCCCEEC---TTSSCEEEEEECTTSCEEEEEESSCST---------T-CEECSCSSSCEEEEE
T ss_pred EEecccccCCceEccccCCccEEC---CCCCeEEEEEEccCCceEEEEEECCCC---------c-eEecccCceEEEEEE
Confidence 33 35666666 78899 89985543 44555 5777787765 2 223344555677777
Q ss_pred eecCCCCcEEEeeC-----CCeEEEeeC
Q 018858 326 TTPTESENLVVCDT-----SKVVKVYSI 348 (349)
Q Consensus 326 ~~~~~~~~l~~~~~-----dg~i~iw~~ 348 (349)
++ +++.|+..+. ++..++|.+
T Consensus 364 ~~--d~~~i~~~~~~~~~~~~~~~l~~~ 389 (719)
T 1z68_A 364 RV--TQDSLFYSSNEFEEYPGRRNIYRI 389 (719)
T ss_dssp EE--CSSEEEEEESCGGGCTTCBEEEEE
T ss_pred EE--eCCEEEEEEecCCCCCceEEEEEE
Confidence 76 5556666554 488888875
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.7e-21 Score=160.23 Aligned_cols=258 Identities=13% Similarity=0.054 Sum_probs=168.6
Q ss_pred cCCCCeeeeCCce--eeeEEEEecCCCc-eEEEeCCCCcEEEEECCCCcEEEEeecCC-----CCeEEEEEecCCCEEEE
Q 018858 4 AEAKPRRLRGHKA--TATCCIASRDRPG-FVASSGEDGCICWFDLRSKDVQLVTDVGN-----GPVTSLCFKSGNEDIIY 75 (349)
Q Consensus 4 ~~~~~~~l~~h~~--~i~~~~~~~~~~~-~l~t~~~dg~i~vwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~ 75 (349)
+++.++.+..... .+.+++|+|+ ++ +++++..++.|.+||+.+++.+..+.... ..+..++|+|+++++++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~s~d-g~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 98 (337)
T 1pby_B 20 KMAVDKVITIADAGPTPMVPMVAPG-GRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAI 98 (337)
T ss_dssp TTEEEEEEECTTCTTCCCCEEECTT-SSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEE
T ss_pred CCcEEEEEEcCCCCCCccceEEcCC-CCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEE
Confidence 3455556653322 5788999999 55 45677778999999999998877666321 25678999999999988
Q ss_pred Ee------------CCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceecc
Q 018858 76 VS------------SGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA 143 (349)
Q Consensus 76 ~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 143 (349)
++ .++.|.+||+.+++....+.. ...+..++|+|++++++++ ++.|++||+.+++....+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~- 171 (337)
T 1pby_B 99 YESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA----PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKP- 171 (337)
T ss_dssp EEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC----CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEEC-
T ss_pred EecccccccccccccCceEEEEECCCCcEEEEEeC----CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeee-
Confidence 86 579999999987643332222 3457889999999988887 5789999999998877666
Q ss_pred ccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcE----EEEEcCCC----------eEEEE
Q 018858 144 GHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKI----CVVAKGDG----------VVDVI 209 (349)
Q Consensus 144 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~dg----------~i~i~ 209 (349)
.+. ....+.|+|++..+..... .+.. ...+..++ .|.+|
T Consensus 172 ~~~-~~~~~~~s~dg~~l~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 224 (337)
T 1pby_B 172 IQS-WEAETYAQPDVLAVWNQHE--------------------------SSGVMATPFYTARKDIDPADPTAYRTGLLTM 224 (337)
T ss_dssp STT-TTTTTBCCCBCCCCCCCCT--------------------------TTTEEEEEEEEEBTTSCTTSGGGEEEEEEEE
T ss_pred ccc-cCCCceeCCCccEEeeecc--------------------------CCCceeeeeeccccccccccccccccceEEE
Confidence 222 1123367774332210000 0111 11111111 58899
Q ss_pred EccCceeeeecCCCCCCccceeeeeccccEEEEeee-eeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCC
Q 018858 210 NIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI-LDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND 288 (349)
Q Consensus 210 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d 288 (349)
|+.+++...............++|+|+|+++++... .........+....+.. ...+.+++|+ |++++|++++.+
T Consensus 225 d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s---~dg~~l~~~~~~ 300 (337)
T 1pby_B 225 DLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPL-PHSYYSVNVS---TDGSTVWLGGAL 300 (337)
T ss_dssp ETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEESEEEEEETTTTEEEEEEEC-SSCCCEEEEC---TTSCEEEEESBS
T ss_pred eCCCCCceEeecCCCCCceeeEEECCCCCEEEEeCCeEEEEECCCCcCcceecC-CCceeeEEEC---CCCCEEEEEcCC
Confidence 999876543222233345667999999999886410 00011111223333332 2457889999 899999999999
Q ss_pred CeEEEEecCCCc
Q 018858 289 KLVKVWDCSRFQ 300 (349)
Q Consensus 289 ~~i~vwd~~~~~ 300 (349)
+.|++||+.+++
T Consensus 301 ~~i~v~d~~~~~ 312 (337)
T 1pby_B 301 GDLAAYDAETLE 312 (337)
T ss_dssp SEEEEEETTTCC
T ss_pred CcEEEEECcCCc
Confidence 999999999874
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-20 Score=158.42 Aligned_cols=253 Identities=11% Similarity=0.085 Sum_probs=166.8
Q ss_pred ceeeeEEEEecCCCceEEEeCCCCcEEEEECC-CCcEEEEeecC-CCCeEEEEEecCCCE--EEEEe-------------
Q 018858 15 KATATCCIASRDRPGFVASSGEDGCICWFDLR-SKDVQLVTDVG-NGPVTSLCFKSGNED--IIYVS------------- 77 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~--l~~~~------------- 77 (349)
...+..++|+|+ +++|++++.+ .|.+|++. +++........ .+.+..++|+|+|++ ++++.
T Consensus 39 ~~~~~~~a~spd-g~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 39 DEPISWMTFDHE-RKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TCCCSEEEECTT-SSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCcEEEECCC-CCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 346788999998 8888888877 99999997 77664433211 123556899999995 44543
Q ss_pred CCCeEEEEEccC-CCcccceeecc-CcccceEEEEEccCCCEEEEEc-CCCcEEEEEcC-CceEe--ceecc-cccccee
Q 018858 78 SGKEVKSFDVHM-PASWRPLESYN-YNKEEINQIVCNPKSSFLACAD-DGGDVKIIDIR-QHCLY--KSLRA-GHSSICS 150 (349)
Q Consensus 78 ~dg~i~iwd~~~-~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~-~~~~~--~~~~~-~~~~~v~ 150 (349)
.++.+.+|++.. ++....+..+. .+...+.+++|+|++++++++. .++.|++||+. +++.. ..+.. .+...+.
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~ 196 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR 196 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence 689999999974 43322333221 1345789999999999887765 46789999998 66543 22320 1245688
Q ss_pred EEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEc-CCCeEEEEEccC--ceeeeecCCCCCCc
Q 018858 151 SVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIES--ELNISRSKSTTKPL 227 (349)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~--~~~~~~~~~~~~~~ 227 (349)
.++|+| +++++++++ .++.|.+|++.. ++....
T Consensus 197 ~~~~sp------------------------------------dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~-------- 232 (365)
T 1jof_A 197 WVAMHP------------------------------------TGNYLYALMEAGNRICEYVIDPATHMPVYT-------- 232 (365)
T ss_dssp EEEECT------------------------------------TSSEEEEEETTTTEEEEEEECTTTCCEEEE--------
T ss_pred EeEECC------------------------------------CCCEEEEEECCCCeEEEEEEeCCCCcEEEc--------
Confidence 899999 788887766 478999998763 211000
Q ss_pred cceeeeeccccEEEEeeeeeecCceeeeeeeee----cCCCc------ceEEEE-EeeecCCccEEEEeeCC-C-----e
Q 018858 228 KGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSV----GGHTA------AASCVA-FSMFGERGKYLISGGND-K-----L 290 (349)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~h~~------~i~~i~-~~~~~~~~~~l~s~~~d-~-----~ 290 (349)
...+..+ .+|.. .+..++ |+ |||++|++++.+ . .
T Consensus 233 --------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~s---pdG~~l~v~~~~~~~~~~~~ 283 (365)
T 1jof_A 233 --------------------------HHSFPLIPPGIPDRDPETGKGLYRADVCALT---FSGKYMFASSRANKFELQGY 283 (365)
T ss_dssp --------------------------EEEEESSCTTCCCBCTTTSSBSEEEEEEEEC---TTSSEEEEEEEESSTTSCCE
T ss_pred --------------------------cceEEcCCCCcCCcccccccccccccEEEEC---CCCCEEEEECCCCCCCCCCe
Confidence 0011111 12232 578999 99 899998876643 2 8
Q ss_pred EEEEecC-CCcceecccccceeeeccccccceEEEEeecC--CCCcEEEeeC-CCeEEEeeC
Q 018858 291 VKVWDCS-RFQGVQTSINNDLLIKNINLNKKVNWLCTTPT--ESENLVVCDT-SKVVKVYSI 348 (349)
Q Consensus 291 i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~-dg~i~iw~~ 348 (349)
|.+|++. +++.. ........+...+..++|+|. ++++|++++. ++.|.+|++
T Consensus 284 i~v~~~~~~g~~~------~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~ 339 (365)
T 1jof_A 284 IAGFKLRDCGSIE------KQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW 339 (365)
T ss_dssp EEEEEECTTSCEE------EEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred EEEEEECCCCCEE------EeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEE
Confidence 9999996 44210 111012224445677888885 6888988875 599999985
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-19 Score=150.64 Aligned_cols=238 Identities=8% Similarity=0.040 Sum_probs=169.5
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCc-eEEEeCCCCcEEEEECCCCcEEEEeecCCCC---------eEEEEEecCCCEE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPG-FVASSGEDGCICWFDLRSKDVQLVTDVGNGP---------VTSLCFKSGNEDI 73 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~-~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~l 73 (349)
+++.++.+.. ...+.+++|+|+ ++ ++++...++.|.+||..+++.+..+..+... +..++|+|+++++
T Consensus 78 ~~~~~~~~~~-~~~~~~~~~s~d-g~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 155 (353)
T 3vgz_A 78 TLEVTQAIHN-DLKPFGATINNT-TQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTV 155 (353)
T ss_dssp TCCEEEEEEE-SSCCCSEEEETT-TTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEE
T ss_pred CCeEEEEEec-CCCcceEEECCC-CCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEE
Confidence 3444555553 344778899998 55 5666677899999999999988887765432 6889999999988
Q ss_pred EEEe--CCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceecc---ccccc
Q 018858 74 IYVS--SGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA---GHSSI 148 (349)
Q Consensus 74 ~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~ 148 (349)
++++ .++.|.+||.++++.. ..+..+...+..++|+|+++++++++.++.|.+||+.+++....+.. ++...
T Consensus 156 ~~~~~~~~~~i~~~d~~~~~~~---~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 232 (353)
T 3vgz_A 156 YISGIGKESVIWVVDGGNIKLK---TAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHF 232 (353)
T ss_dssp EEEEESSSCEEEEEETTTTEEE---EEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCC
T ss_pred EEEecCCCceEEEEcCCCCceE---EEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcc
Confidence 7776 4789999999876433 33332344578899999999999999999999999999988877662 13445
Q ss_pred eeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEc-CCCeEEEEEccCceeeeecCCCCCCc
Q 018858 149 CSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESELNISRSKSTTKPL 227 (349)
Q Consensus 149 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~ 227 (349)
+..++|+| +++.+++++ .++.|.+||+.+++.........
T Consensus 233 ~~~~~~s~------------------------------------dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--- 273 (353)
T 3vgz_A 233 FINISLDT------------------------------------ARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--- 273 (353)
T ss_dssp EEEEEEET------------------------------------TTTEEEEEESSSSEEEEEETTTCCEEEEEECSS---
T ss_pred cceEEECC------------------------------------CCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC---
Confidence 67789998 677666555 55999999999877665544332
Q ss_pred cceeeeeccccEEEEeeeeeecC----ceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCC
Q 018858 228 KGSQSTSKVNIRDAEMEILDQSG----GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDK 289 (349)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~ 289 (349)
...++|+|+|+++++....+..+ ....+.+..+.. ...+..++|+ |+|++|+.+..++
T Consensus 274 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s---~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 274 SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT-PTHPNSLALS---ADGKTLYVSVKQK 335 (353)
T ss_dssp CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC-CSEEEEEEEC---TTSCEEEEEEECC
T ss_pred CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec-CCCCCeEEEc---CCCCEEEEEEccc
Confidence 25699999999776543222211 112233334433 3467899999 8999777766553
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=8.5e-19 Score=144.70 Aligned_cols=243 Identities=9% Similarity=0.086 Sum_probs=172.9
Q ss_pred ceeeeEEEEecCCCceEEEeCCC------------------------CcEEEEECCCCcEEEEee-cCCCCeEEEEEecC
Q 018858 15 KATATCCIASRDRPGFVASSGED------------------------GCICWFDLRSKDVQLVTD-VGNGPVTSLCFKSG 69 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~d------------------------g~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~ 69 (349)
-+.+.+++++|+ ++++++...+ +.|.+||..+++.+..+. .+-..+..++++|+
T Consensus 23 l~~v~~va~d~~-G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSK-NNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp CSCEEEEEECTT-CCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred cCCceEEEECCC-CCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence 467999999998 7888887776 479999999888876654 34457899999999
Q ss_pred CCEEEEEeCCCeEEEEEccCCC-cccceeec------cCcccceEEEEEcc-CCCEEEEEc-CCCcEEEEEcCCceEece
Q 018858 70 NEDIIYVSSGKEVKSFDVHMPA-SWRPLESY------NYNKEEINQIVCNP-KSSFLACAD-DGGDVKIIDIRQHCLYKS 140 (349)
Q Consensus 70 ~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~------~~~~~~v~~~~~~~-~~~~l~~~~-~dg~i~i~d~~~~~~~~~ 140 (349)
|+.+++...++.|++||..... ....+... ..+...+..++++| ++.++++.+ .++.|++|| .+++.+..
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~ 180 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQ 180 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEE
Confidence 9988888888999999976421 11111110 22334688999999 788888876 689999999 56666665
Q ss_pred ecc---------ccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCC-CcEEEEEcCCCeEEEEE
Q 018858 141 LRA---------GHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT-NKICVVAKGDGVVDVIN 210 (349)
Q Consensus 141 ~~~---------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~i~d 210 (349)
+.. .+-.....++++| + +.++++...++.|++||
T Consensus 181 ~~~~g~~~~~~~~~~~~p~gia~d~------------------------------------~~g~l~v~d~~~~~I~~~~ 224 (329)
T 3fvz_A 181 WGEESSGSSPRPGQFSVPHSLALVP------------------------------------HLDQLCVADRENGRIQCFK 224 (329)
T ss_dssp ECEECCSSSCCTTEESCEEEEEEET------------------------------------TTTEEEEEETTTTEEEEEE
T ss_pred eccCCCCCCCCCcccCCCcEEEEEC------------------------------------CCCEEEEEECCCCEEEEEE
Confidence 530 1112366777777 5 77788888899999999
Q ss_pred ccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeee--cCCCcceEEEEEeeecC------CccEE
Q 018858 211 IESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSV--GGHTAAASCVAFSMFGE------RGKYL 282 (349)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~i~~i~~~~~~~------~~~~l 282 (349)
..+++ .+..+ ..+...+..++++ | +++..
T Consensus 225 ~~~G~----------------------------------------~~~~~~~~~~~~~~~~~~~~---pg~~~~~~g~~~ 261 (329)
T 3fvz_A 225 TDTKE----------------------------------------FVREIKHASFGRNVFAISYI---PGFLFAVNGKPY 261 (329)
T ss_dssp TTTCC----------------------------------------EEEEECCTTTTTCEEEEEEE---TTEEEEEECCCC
T ss_pred CCCCc----------------------------------------EEEEEeccccCCCcceeeec---CCEEEEeCCCEE
Confidence 98542 22222 2345567788887 6 33333
Q ss_pred EEeeCCCeEEEEecCCCcceecccccceeeec---cccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 283 ISGGNDKLVKVWDCSRFQGVQTSINNDLLIKN---INLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 283 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
++...+..|++||..++ .++..+ ..+...+..++++| +|.++++...++.|++|++
T Consensus 262 v~~~~~~~v~~~~~~~g---------~~~~~~~~~~~~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~ 320 (329)
T 3fvz_A 262 FGDQEPVQGFVMNFSSG---------EIIDVFKPVRKHFDMPHDIVASE-DGTVYIGDAHTNTVWKFTL 320 (329)
T ss_dssp TTCSCCCCEEEEETTTC---------CEEEEECCSSSCCSSEEEEEECT-TSEEEEEESSSCCEEEEEE
T ss_pred eccCCCcEEEEEEcCCC---------eEEEEEcCCCCccCCeeEEEECC-CCCEEEEECCCCEEEEEeC
Confidence 33334568999999887 444443 35667789999988 7777777788999999985
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-18 Score=138.84 Aligned_cols=238 Identities=11% Similarity=0.117 Sum_probs=167.6
Q ss_pred CCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeec------CCCCeEEEEEe-cCCCEEEEEeC-CCeEEE
Q 018858 13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDV------GNGPVTSLCFK-SGNEDIIYVSS-GKEVKS 84 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~------~~~~v~~~~~~-~~~~~l~~~~~-dg~i~i 84 (349)
+|-....+++++++ ++++++...++.|.+||.. ++.+..+.. +...+..+++. ++++.+++... ++.|.+
T Consensus 27 g~~~~p~~v~~~~~-g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQ-NDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TCBSCEEEEEECTT-CCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CccCCCceEEECCC-CCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 45567899999998 7888888888999999987 665555532 33568899995 66665555533 789999
Q ss_pred EEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceecc-ccccceeEEEEccCCCCCCC
Q 018858 85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA-GHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~ 163 (349)
||. +++....+. ..+...+..++++|+++++++...++.|++||.. ++.+..+.. .+...+..++++|
T Consensus 105 ~d~-~g~~~~~~~--~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~------- 173 (286)
T 1q7f_A 105 YNQ-YGQFVRKFG--ATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVND------- 173 (286)
T ss_dssp ECT-TSCEEEEEC--TTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECS-------
T ss_pred ECC-CCcEEEEec--CccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECC-------
Confidence 994 443322221 1223568899999999988888888899999964 455444431 2334577888888
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
+++++++...++.|++||....
T Consensus 174 -----------------------------~g~l~v~~~~~~~i~~~~~~g~----------------------------- 195 (286)
T 1q7f_A 174 -----------------------------KQEIFISDNRAHCVKVFNYEGQ----------------------------- 195 (286)
T ss_dssp -----------------------------SSEEEEEEGGGTEEEEEETTCC-----------------------------
T ss_pred -----------------------------CCCEEEEECCCCEEEEEcCCCC-----------------------------
Confidence 7888888788999999998642
Q ss_pred eeeeecCceeeeeeeeec--CCCcceEEEEEeeecCCccEEEEeeCCC-eEEEEecCCCcceecccccceeeecccc--c
Q 018858 244 EILDQSGGKRLHLDYSVG--GHTAAASCVAFSMFGERGKYLISGGNDK-LVKVWDCSRFQGVQTSINNDLLIKNINL--N 318 (349)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~--~h~~~i~~i~~~~~~~~~~~l~s~~~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~ 318 (349)
.+..+. ++...+..++++ ++|+++++...++ .|++||... ..+..+..+ .
T Consensus 196 ------------~~~~~~~~g~~~~p~~i~~d---~~G~l~v~~~~~~~~i~~~~~~g----------~~~~~~~~~~~~ 250 (286)
T 1q7f_A 196 ------------YLRQIGGEGITNYPIGVGIN---SNGEILIADNHNNFNLTIFTQDG----------QLISALESKVKH 250 (286)
T ss_dssp ------------EEEEESCTTTSCSEEEEEEC---TTCCEEEEECSSSCEEEEECTTS----------CEEEEEEESSCC
T ss_pred ------------EEEEEccCCccCCCcEEEEC---CCCCEEEEeCCCCEEEEEECCCC----------CEEEEEcccCCC
Confidence 122222 223567899999 8999888888776 999999654 233333322 2
Q ss_pred cceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 319 KKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 319 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
..+.++++.| +++++++ +.|+.|++|++
T Consensus 251 ~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~ 278 (286)
T 1q7f_A 251 AQCFDVALMD-DGSVVLA-SKDYRLYIYRY 278 (286)
T ss_dssp SCEEEEEEET-TTEEEEE-ETTTEEEEEEC
T ss_pred CcceeEEECC-CCcEEEE-CCCCeEEEEEc
Confidence 3477899988 7765555 67999999986
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.1e-20 Score=168.77 Aligned_cols=292 Identities=11% Similarity=0.073 Sum_probs=180.4
Q ss_pred CCCeeeeCCce---eeeEEEEecCCCceEEEeCC---------CCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEE
Q 018858 6 AKPRRLRGHKA---TATCCIASRDRPGFVASSGE---------DGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDI 73 (349)
Q Consensus 6 ~~~~~l~~h~~---~i~~~~~~~~~~~~l~t~~~---------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 73 (349)
+..+.+.+|.. .|.+++|+|+ +++|++++. ++.|++||+.+++.+.... -...+..++|+|+|+.|
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~SpD-g~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~-l~~~~~~~~~SPDG~~l 124 (719)
T 1z68_A 47 QSYTILSNRTMKSVNASNYGLSPD-RQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE-LPRPIQYLCWSPVGSKL 124 (719)
T ss_dssp CEEEEECHHHHHTTTCSEEEECTT-SSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-CCSSBCCEEECSSTTCE
T ss_pred cEEEEEccccccccceeeEEECCC-CCeEEEEecCceeEEeecceEEEEEECCCCcccccee-cCcccccceECCCCCEE
Confidence 33344444433 3899999999 888888765 6899999999887521111 12568889999999999
Q ss_pred EEEeCCCeEEEEEccCCCcccceeeccCccc-----------------ceEEEEEccCCCEEEEEcCCC-----------
Q 018858 74 IYVSSGKEVKSFDVHMPASWRPLESYNYNKE-----------------EINQIVCNPKSSFLACADDGG----------- 125 (349)
Q Consensus 74 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----------------~v~~~~~~~~~~~l~~~~~dg----------- 125 (349)
+++. ++.|++|++.+++...... .++.. ....++|+|||++|++++.|.
T Consensus 125 a~~~-~~~i~~~~~~~g~~~~l~~--~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~ 201 (719)
T 1z68_A 125 AYVY-QNNIYLKQRPGDPPFQITF--NGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYY 201 (719)
T ss_dssp EEEE-TTEEEEESSTTSCCEECCC--CCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEEC
T ss_pred EEEE-CCeEEEEeCCCCCcEEEec--CCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeecc
Confidence 9986 7899999998765432211 11111 124899999999999887542
Q ss_pred -----------------------cEEEEEcCCceEe--------ceeccccccceeEEEEccCCCCCCCCCCCCCCcccc
Q 018858 126 -----------------------DVKIIDIRQHCLY--------KSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCY 174 (349)
Q Consensus 126 -----------------------~i~i~d~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (349)
.|++||+.+++.. ..+. .+...+..++|+|
T Consensus 202 ~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Sp------------------ 262 (719)
T 1z68_A 202 GDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIA-SSDYYFSWLTWVT------------------ 262 (719)
T ss_dssp CSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHH-TSCEEEEEEEESS------------------
T ss_pred CCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCC-CCcceEEEeEEeC------------------
Confidence 6889998877642 2233 4667788889988
Q ss_pred CCceeEEeecCcccccCCCCcEEEEEcCC----CeEEEEE----ccCceeeeecC---CCCCCccc-----eeeeecccc
Q 018858 175 NPAFVHAIAIPDADMLDKTNKICVVAKGD----GVVDVIN----IESELNISRSK---STTKPLKG-----SQSTSKVNI 238 (349)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----g~i~i~d----~~~~~~~~~~~---~~~~~~~~-----~~~~~~~~~ 238 (349)
+++++++.... ..|.+|| +.+++...... ......+. .+.|+|||+
T Consensus 263 ------------------D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~ 324 (719)
T 1z68_A 263 ------------------DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAI 324 (719)
T ss_dssp ------------------SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSS
T ss_pred ------------------CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCC
Confidence 77777664322 3588899 77766544442 22233344 789999999
Q ss_pred EEEEe-eeeeec----Cc-eeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeC----CCeEEEEecCC--Ccceeccc
Q 018858 239 RDAEM-EILDQS----GG-KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN----DKLVKVWDCSR--FQGVQTSI 306 (349)
Q Consensus 239 ~~~~~-~~~~~~----~~-~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~----d~~i~vwd~~~--~~~~~~~~ 306 (349)
.++.. ...++. .. ........+..+...+..+.+. .++.+++++.. ++..++|.+.. +....
T Consensus 325 ~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~---d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~--- 398 (719)
T 1z68_A 325 SYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV---TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSK--- 398 (719)
T ss_dssp CEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE---CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCE---
T ss_pred eEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE---eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCc---
Confidence 77642 111111 00 0001123344455567777665 34444444444 47888998764 21000
Q ss_pred ccceeee-ccccccceEEEEeecCCCCcEEE-eeCC--CeEEEeeC
Q 018858 307 NNDLLIK-NINLNKKVNWLCTTPTESENLVV-CDTS--KVVKVYSI 348 (349)
Q Consensus 307 ~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~-~~~d--g~i~iw~~ 348 (349)
..+.. +.+|...+..+.|+| ++++++. ++.+ ..+.+||+
T Consensus 399 --~~l~~~~~~~~~~~~~~~~s~-dg~~l~~~~s~~~~p~~~l~d~ 441 (719)
T 1z68_A 399 --KCVTCHLRKERCQYYTASFSD-YAKYYALVCYGPGIPISTLHDG 441 (719)
T ss_dssp --EESSTTTTTTTBCBEEEEECG-GGSSEEEEECCBSSCEEEEECS
T ss_pred --eeccCccCCCCCceEEEEECC-CCCEEEEEcCCCCCCeEEEEEC
Confidence 11111 223666778888988 6666654 4333 46777775
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-18 Score=145.03 Aligned_cols=212 Identities=6% Similarity=0.080 Sum_probs=142.9
Q ss_pred CeeeeCCceeeeEEEEecCCCceEEEeC-CCCcEEEEECC-CCc--EEEEeecC---------CCCeEEEEEecCCCEEE
Q 018858 8 PRRLRGHKATATCCIASRDRPGFVASSG-EDGCICWFDLR-SKD--VQLVTDVG---------NGPVTSLCFKSGNEDII 74 (349)
Q Consensus 8 ~~~l~~h~~~i~~~~~~~~~~~~l~t~~-~dg~i~vwd~~-~~~--~~~~~~~~---------~~~v~~~~~~~~~~~l~ 74 (349)
+..+..|...+..++|+|+ +++|++++ .++.+.+|++. ++. .+..+... ...+.+++|+|+++.++
T Consensus 78 ~~~~~~~~~~p~~~a~spd-g~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v 156 (347)
T 3hfq_A 78 LNTVVAPGTPPAYVAVDEA-RQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAV 156 (347)
T ss_dssp EEEEEEESCCCSEEEEETT-TTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEE
T ss_pred eeeeecCCCCCEEEEECCC-CCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEE
Confidence 3444556778899999999 78777666 77999999996 333 23333321 12488899999999666
Q ss_pred EEeCCCeEEEEEccCCCcccceeeccC-cccceEEEEEccCCCEEEE-EcCCCcEEEEEcCC--ceE--eceeccccc--
Q 018858 75 YVSSGKEVKSFDVHMPASWRPLESYNY-NKEEINQIVCNPKSSFLAC-ADDGGDVKIIDIRQ--HCL--YKSLRAGHS-- 146 (349)
Q Consensus 75 ~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~~--~~~--~~~~~~~~~-- 146 (349)
+...++.|.+|++.............. ....+..++|+|+++++++ +..++.|.+|++.. ++. +..+. ...
T Consensus 157 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~-~~~~~ 235 (347)
T 3hfq_A 157 IDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVK-TIPAD 235 (347)
T ss_dssp EETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE-SSCTT
T ss_pred EeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeee-ecCCC
Confidence 666788999999983222222222211 2236788999999996655 56788999999874 442 22222 111
Q ss_pred ----cceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEE-EEEcCCCeEEEEEccCceeeeecC
Q 018858 147 ----SICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC-VVAKGDGVVDVINIESELNISRSK 221 (349)
Q Consensus 147 ----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~ 221 (349)
..+..++|+| ++++| ++...++.|.+|++...
T Consensus 236 ~~~~~~~~~i~~sp------------------------------------dG~~l~v~~~~~~~v~v~~~~~~------- 272 (347)
T 3hfq_A 236 YTAHNGAAAIRLSH------------------------------------DGHFLYVSNRGYNTLAVFAVTAD------- 272 (347)
T ss_dssp CCSCCEEEEEEECT------------------------------------TSCEEEEEEETTTEEEEEEECGG-------
T ss_pred CCCCCcceeEEECC------------------------------------CCCEEEEEeCCCCEEEEEEECCC-------
Confidence 3466778887 78877 45556899999999731
Q ss_pred CCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeC-CCeEEEEecC
Q 018858 222 STTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN-DKLVKVWDCS 297 (349)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~-d~~i~vwd~~ 297 (349)
.....+..+..+...+..++|+ |+|++|++++. ++.|.+|+++
T Consensus 273 ------------------------------g~~~~~~~~~~~~~~~~~~~~s---pdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 273 ------------------------------GHLTLIQQISTEGDFPRDFDLD---PTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp ------------------------------GCEEEEEEEECSSSCCCEEEEC---TTSSEEEEEETTTTEEEEEEEC
T ss_pred ------------------------------CcEEEeEEEecCCCCcCeEEEC---CCCCEEEEEEcCCCcEEEEEEe
Confidence 0113334445555667899999 89998888875 4899999553
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.84 E-value=6.1e-19 Score=146.82 Aligned_cols=134 Identities=10% Similarity=0.128 Sum_probs=98.7
Q ss_pred cCCCCeeeeCCc-eeeeEEEEecCCCce-EEEeCCCCcEEEEECCCCcEEEEeecCC------CCeEEEEEecCCCEEEE
Q 018858 4 AEAKPRRLRGHK-ATATCCIASRDRPGF-VASSGEDGCICWFDLRSKDVQLVTDVGN------GPVTSLCFKSGNEDIIY 75 (349)
Q Consensus 4 ~~~~~~~l~~h~-~~i~~~~~~~~~~~~-l~t~~~dg~i~vwd~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~ 75 (349)
+++.++.+..+. ..+..++|+|+ +++ ++++..++.|.+||+.+++.+..+..+. ..+..++|+|+|+++++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~s~d-g~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~ 108 (349)
T 1jmx_B 30 SDTVYKSCVMPDKFGPGTAMMAPD-NRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYA 108 (349)
T ss_dssp TTEEEEEEECSSCCSSCEEEECTT-SSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEE
T ss_pred CCcEEEEEecCCCCCCceeEECCC-CCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEE
Confidence 345556666443 25778999998 664 5566778999999999998877776432 23778999999999999
Q ss_pred EeCC------------CeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceec
Q 018858 76 VSSG------------KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR 142 (349)
Q Consensus 76 ~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 142 (349)
++.+ +.|.+||+.+++....+..... ...+.+++|+|+++ +++++. .|++||+.+++....+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~ 183 (349)
T 1jmx_B 109 TVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALP 183 (349)
T ss_dssp EEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEEC
T ss_pred EcccccccccccccCCCeEEEEECCCccccceeeeccC-CCcccceeECCCCc-EEEccC--cEEEEeCCCCceecccc
Confidence 8865 8999999987544444443332 24688899999999 555544 49999999988777665
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-19 Score=161.29 Aligned_cols=235 Identities=8% Similarity=-0.004 Sum_probs=163.0
Q ss_pred CCCeeeeCCc-eeeeEEEEecCCCceEEEeCC---CCcEEEEECCC---CcEEEEeecCCCCeEEEEEecCCCEE-EEEe
Q 018858 6 AKPRRLRGHK-ATATCCIASRDRPGFVASSGE---DGCICWFDLRS---KDVQLVTDVGNGPVTSLCFKSGNEDI-IYVS 77 (349)
Q Consensus 6 ~~~~~l~~h~-~~i~~~~~~~~~~~~l~t~~~---dg~i~vwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~ 77 (349)
...+++..|. ..+.+++|+|+ +++++++. +....+|.+.. +... .+.. ...+...+|+|+++.+ ++.+
T Consensus 54 g~~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~-~~~~~~~~~s~dg~~~~~~s~ 129 (582)
T 3o4h_A 54 GETVKLNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEA-VKPMRILSGVDTGEAVVFTGA 129 (582)
T ss_dssp TEEEECCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTT-SCSBEEEEEEECSSCEEEEEE
T ss_pred CCcEeeecccccccccccCCCC--eEEEEeccCCCCcceEEEEEeccCCCccc-cccC-CCCceeeeeCCCCCeEEEEec
Confidence 3455666666 68999999987 67776654 45455654432 3322 3332 2345567899988653 3333
Q ss_pred CCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCC----CcEEEEEcCCceEeceeccccccceeEEE
Q 018858 78 SGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDG----GDVKIIDIRQHCLYKSLRAGHSSICSSVQ 153 (349)
Q Consensus 78 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~v~~~~ 153 (349)
.++.+.+||+.+++.. .+... .. .+++|+|||+++++++.+ +.|++||+.+++.. .+. .+...+..++
T Consensus 130 ~~~~~~l~d~~~g~~~-~l~~~---~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~-~~~~~~~~~~ 201 (582)
T 3o4h_A 130 TEDRVALYALDGGGLR-ELARL---PG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFD-SGEGSFSSAS 201 (582)
T ss_dssp CSSCEEEEEEETTEEE-EEEEE---SS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EEC-CSSCEEEEEE
T ss_pred CCCCceEEEccCCcEE-EeecC---CC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-Eee-cCCCccccce
Confidence 4455669999876432 22221 12 789999999999988776 77999999888754 555 6778889999
Q ss_pred EccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCC--eEEEEEccCceeeeecCCCCCCcccee
Q 018858 154 FIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG--VVDVINIESELNISRSKSTTKPLKGSQ 231 (349)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~ 231 (349)
|+| +|+.|+++..++ .|++||+.+++
T Consensus 202 ~Sp------------------------------------DG~~l~~~~~~~~~~i~~~d~~~~~---------------- 229 (582)
T 3o4h_A 202 ISP------------------------------------GMKVTAGLETAREARLVTVDPRDGS---------------- 229 (582)
T ss_dssp ECT------------------------------------TSCEEEEEECSSCEEEEEECTTTCC----------------
T ss_pred ECC------------------------------------CCCEEEEccCCCeeEEEEEcCCCCc----------------
Confidence 999 899999888888 89999998752
Q ss_pred eeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEE--------EeeecCCccEEEEeeCCCeEEEEecCCCccee
Q 018858 232 STSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVA--------FSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ 303 (349)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~--------~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 303 (349)
.. .+.+|...+..+. |+ |||.++++++.|+.+++|++ +
T Consensus 230 ------------------------~~-~~~~~~~~~~~~~~~~~~~~~~s---pdg~~~~~~~~~g~~~l~~~--g---- 275 (582)
T 3o4h_A 230 ------------------------VE-DLELPSKDFSSYRPTAITWLGYL---PDGRLAVVARREGRSAVFID--G---- 275 (582)
T ss_dssp ------------------------EE-ECCCSCSHHHHHCCSEEEEEEEC---TTSCEEEEEEETTEEEEEET--T----
T ss_pred ------------------------EE-EccCCCcChhhhhhccccceeEc---CCCcEEEEEEcCCcEEEEEE--C----
Confidence 11 3344544444444 88 89999999999999999999 4
Q ss_pred cccccceeeeccccccceEEEEeecCCCCcEEEeeCCC---eEEEeeC
Q 018858 304 TSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSK---VVKVYSI 348 (349)
Q Consensus 304 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~iw~~ 348 (349)
+... .+.+.+.+++|+ +++++++++.+. .+++|++
T Consensus 276 -----~~~~---~~~~~v~~~~~s--dg~~l~~~s~~~~p~~l~~~d~ 313 (582)
T 3o4h_A 276 -----ERVE---APQGNHGRVVLW--RGKLVTSHTSLSTPPRIVSLPS 313 (582)
T ss_dssp -----EEEC---CCSSEEEEEEEE--TTEEEEEEEETTEEEEEEEETT
T ss_pred -----Ceec---cCCCceEEEEec--CCEEEEEEcCCCCCCeEEEEcC
Confidence 3332 233578888886 778888887764 4666654
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-17 Score=135.80 Aligned_cols=246 Identities=12% Similarity=0.036 Sum_probs=172.2
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCc-eEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPG-FVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEV 82 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~-~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 82 (349)
.+..+..+..+.....+++|+|+ ++ +++++..++.|..||..++ ...+..+...+.+++++++++++++...++.|
T Consensus 16 ~~~~~~~l~~~~~~~eg~~~d~~-g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i 92 (296)
T 3e5z_A 16 AGAEARRLADGFTWTEGPVYVPA-RSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRL 92 (296)
T ss_dssp TTCCCEEEECCCSSEEEEEEEGG-GTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEE
T ss_pred CCCcEEEEecCCccccCCeEeCC-CCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeE
Confidence 45567778777778899999999 66 7888888999999999877 56666677889999999999987777777899
Q ss_pred EEEEccCCCcccceeeccC-cccceEEEEEccCCCEEEE----Ec-------------CCCcEEEEEcCCceEeceeccc
Q 018858 83 KSFDVHMPASWRPLESYNY-NKEEINQIVCNPKSSFLAC----AD-------------DGGDVKIIDIRQHCLYKSLRAG 144 (349)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~----~~-------------~dg~i~i~d~~~~~~~~~~~~~ 144 (349)
.+||..+++.......... ....+..++++|+|+++++ |+ ..+.|..++.. ++. ..+. .
T Consensus 93 ~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~-~ 169 (296)
T 3e5z_A 93 ERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPI-R 169 (296)
T ss_dssp EEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEE-C
T ss_pred EEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEee-c
Confidence 9999977653222221111 1134678999999998887 33 13456666654 443 2333 3
Q ss_pred cccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC-ceeeeecCCC
Q 018858 145 HSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES-ELNISRSKST 223 (349)
Q Consensus 145 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~ 223 (349)
+......++|+| +++.+++.+.++.|.+|++.. +...
T Consensus 170 ~~~~~~gi~~s~------------------------------------dg~~lv~~~~~~~i~~~~~~~~g~~~------ 207 (296)
T 3e5z_A 170 DRVKPNGLAFLP------------------------------------SGNLLVSDTGDNATHRYCLNARGETE------ 207 (296)
T ss_dssp CCSSEEEEEECT------------------------------------TSCEEEEETTTTEEEEEEECSSSCEE------
T ss_pred CCCCCccEEECC------------------------------------CCCEEEEeCCCCeEEEEEECCCCcCc------
Confidence 455667888888 788887777889999999872 2100
Q ss_pred CCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCccee
Q 018858 224 TKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ 303 (349)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 303 (349)
..... +..+...+..++++ ++|+++++. ++.|++||...
T Consensus 208 ----------------------------~~~~~---~~~~~~~p~~i~~d---~~G~l~v~~--~~~v~~~~~~g----- 246 (296)
T 3e5z_A 208 ----------------------------YQGVH---FTVEPGKTDGLRVD---AGGLIWASA--GDGVHVLTPDG----- 246 (296)
T ss_dssp ----------------------------EEEEE---ECCSSSCCCSEEEB---TTSCEEEEE--TTEEEEECTTS-----
T ss_pred ----------------------------CCCeE---eeCCCCCCCeEEEC---CCCCEEEEc--CCeEEEECCCC-----
Confidence 00011 12244556789999 899877766 78999999874
Q ss_pred cccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEE
Q 018858 304 TSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVK 344 (349)
Q Consensus 304 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 344 (349)
..+..+..+.. +++++|..++++.|++++.++..+
T Consensus 247 -----~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~ 281 (296)
T 3e5z_A 247 -----DELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWS 281 (296)
T ss_dssp -----CEEEEEECSSC-CCEEEEESTTSCEEEEEETTEEEE
T ss_pred -----CEEEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEE
Confidence 44545555555 889999644888888888875443
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.84 E-value=8.3e-19 Score=160.36 Aligned_cols=263 Identities=9% Similarity=0.014 Sum_probs=160.6
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCC-----eEEEEEecCCCEEEEEeCC---------Ce
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGP-----VTSLCFKSGNEDIIYVSSG---------KE 81 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~d---------g~ 81 (349)
....++.|+|+ +++++++ |+.|++||+.+++....+..|... ...++|||||++|+.++.+ +.
T Consensus 17 ~~~~~~~w~~d-g~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 17 LKLYSLRWISD-HEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp CCCCCEEECSS-SEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred ccccccEECCC-CcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence 34668899998 7888886 899999999999987777776533 2347899999999998875 56
Q ss_pred EEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccc-------------
Q 018858 82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSI------------- 148 (349)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~------------- 148 (349)
+.+||+.+++.. .+..+...+...+|+|||+.||.+. ++.|++||+.+++..+.-..++...
T Consensus 94 ~~~~d~~~~~~~----~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee 168 (740)
T 4a5s_A 94 YDIYDLNKRQLI----TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEE 168 (740)
T ss_dssp EEEEETTTTEEC----CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHH
T ss_pred EEEEECCCCcEE----EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccch
Confidence 789999986432 2333456799999999999999884 6799999998776543211122221
Q ss_pred ----eeEEEEccCCCCCCCC--CCCCCC-ccc-------cCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC-
Q 018858 149 ----CSSVQFIPWKPWEGLP--ENNGNA-GQC-------YNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES- 213 (349)
Q Consensus 149 ----v~~~~~~~~~~~~~~~--~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~- 213 (349)
...+.|+|||.++... +..... -.. ........+.+.. .|.. .....|++||+.+
T Consensus 169 ~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~------~G~~----~~~~~l~v~d~~~~ 238 (740)
T 4a5s_A 169 VFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPK------AGAV----NPTVKFFVVNTDSL 238 (740)
T ss_dssp TSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCB------TTSC----CCEEEEEEEETTSC
T ss_pred hcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCC------CcCc----CCeeEEEEEECCCC
Confidence 2358899976655321 111000 000 0111222233322 1111 1122688899988
Q ss_pred --c---eeeeecCC----CCCCccceeeeeccccEEEEeeeeee---cCc----eeee----e--eeee--cCCCcceE-
Q 018858 214 --E---LNISRSKS----TTKPLKGSQSTSKVNIRDAEMEILDQ---SGG----KRLH----L--DYSV--GGHTAAAS- 268 (349)
Q Consensus 214 --~---~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~----~~~~----~--~~~~--~~h~~~i~- 268 (349)
+ +....... .....+..++|+|||+.++....... .+. ...+ + ...+ .+|...+.
T Consensus 239 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~ 318 (740)
T 4a5s_A 239 SSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGR 318 (740)
T ss_dssp CSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSS
T ss_pred CCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEcc
Confidence 6 32222211 13455778999999997664222111 000 0001 1 1112 33544443
Q ss_pred ----EEEEeeecCCccEEE-EeeC-C--CeEEEEecCCC
Q 018858 269 ----CVAFSMFGERGKYLI-SGGN-D--KLVKVWDCSRF 299 (349)
Q Consensus 269 ----~i~~~~~~~~~~~l~-s~~~-d--~~i~vwd~~~~ 299 (349)
...|+ |||+.++ ..+. + ..|++||+..+
T Consensus 319 ~~~~~p~fs---pDG~~l~~~~s~~~G~~~l~~~~~~~~ 354 (740)
T 4a5s_A 319 FRPSEPHFT---LDGNSFYKIISNEEGYRHICYFQIDKK 354 (740)
T ss_dssp SSCCCCEEC---TTSSEEEEEEECTTSCEEEEEEETTCS
T ss_pred CcCCCceEc---CCCCEEEEEEEcCCCceEEEEEECCCC
Confidence 67899 8999776 6653 3 46888898875
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-19 Score=152.77 Aligned_cols=286 Identities=12% Similarity=0.072 Sum_probs=174.8
Q ss_pred cCCCCeeeeCCcee-----eeEEEEecCCCceEEEeCC---CCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEE
Q 018858 4 AEAKPRRLRGHKAT-----ATCCIASRDRPGFVASSGE---DGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIY 75 (349)
Q Consensus 4 ~~~~~~~l~~h~~~-----i~~~~~~~~~~~~l~t~~~---dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 75 (349)
+++.++.|..+... +.+++|+|+ +++|+.... +..|.+||+.+++.......+......+.|+|+|++|+.
T Consensus 19 ~g~~~~~l~~~~~~~~~~~~~~~~~Spd-G~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~ 97 (396)
T 3c5m_A 19 TQVKVTRLTPTDIICHRNYFYQKCFTQD-GKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFY 97 (396)
T ss_dssp TCCEEEECSCTTSCEECCCTTSCCBCTT-SCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEE
T ss_pred CCcceEEEecCCCCccceeeecCcCCCC-CCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEE
Confidence 45566777665443 788899999 777665533 246888899888765443333322333789999999999
Q ss_pred EeCCCeEEEEEccCCCcccceeeccCcccceEE-------------------EEEccCCCEEEEE-----cCCCcEEEEE
Q 018858 76 VSSGKEVKSFDVHMPASWRPLESYNYNKEEINQ-------------------IVCNPKSSFLACA-----DDGGDVKIID 131 (349)
Q Consensus 76 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~l~~~-----~~dg~i~i~d 131 (349)
++.++.|++||+.+++.. .+.... ...... ..|+|+++.++.. ..+..|++||
T Consensus 98 ~~~~~~l~~~d~~~~~~~-~~~~~~--~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d 174 (396)
T 3c5m_A 98 VKNELNLMKVDLETLEEQ-VIYTVD--EEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVD 174 (396)
T ss_dssp EETTTEEEEEETTTCCEE-EEEECC--TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEE
T ss_pred EEcCCcEEEEECCCCCcE-EEEecc--cccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEE
Confidence 999999999999876432 222211 111111 3457777766654 3556799999
Q ss_pred cCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCC------Ce
Q 018858 132 IRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD------GV 205 (349)
Q Consensus 132 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------g~ 205 (349)
+.+++...... +...+..+.|+|+ +++.|+..+.+ ..
T Consensus 175 ~~~g~~~~~~~--~~~~~~~~~~sp~-----------------------------------dg~~l~~~~~~~~~~~~~~ 217 (396)
T 3c5m_A 175 IETGELEVIHQ--DTAWLGHPIYRPF-----------------------------------DDSTVGFCHEGPHDLVDAR 217 (396)
T ss_dssp TTTCCEEEEEE--ESSCEEEEEEETT-----------------------------------EEEEEEEEECSCSSSCSCC
T ss_pred CCCCcEEeecc--CCcccccceECCC-----------------------------------CCCEEEEEecCCCCCCCce
Confidence 98877654443 5567888899983 35555554433 46
Q ss_pred EEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCc--------eeeeeeeeecCCCcceEEEEEeeecC
Q 018858 206 VDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG--------KRLHLDYSVGGHTAAASCVAFSMFGE 277 (349)
Q Consensus 206 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~h~~~i~~i~~~~~~~ 277 (349)
|.+||+..+.............+..++|+|+|+.+++......... ..... ..+.... ... +.|+ |
T Consensus 218 l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~-~~~-~~~s---~ 291 (396)
T 3c5m_A 218 MWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN-EEVMVMP-PCS-HLMS---N 291 (396)
T ss_dssp CEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE-EEEEECC-SEE-EEEE---C
T ss_pred EEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe-EEeeeCC-CCC-CCcc---C
Confidence 8888987654333332211335677899999998876543221111 00111 1111111 123 7888 7
Q ss_pred -CccEEEEee----------------CCCeEEEEecCCCcceecccccceeeecccccc-----------ceEEEEeecC
Q 018858 278 -RGKYLISGG----------------NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNK-----------KVNWLCTTPT 329 (349)
Q Consensus 278 -~~~~l~s~~----------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-----------~v~~~~~~~~ 329 (349)
+|+++++++ .+..|++||+.+++. ..+..+.. .+..++|+|
T Consensus 292 ~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~----------~~l~~~~~~~~~~~~~~~~~~~~~~~s~- 360 (396)
T 3c5m_A 292 FDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA----------QKLCKHSTSWDVLDGDRQITHPHPSFTP- 360 (396)
T ss_dssp SSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC----------CEEEECCCCCCCBTTBSSTTCCCCEECT-
T ss_pred CCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce----------EEccCCCCccccccccccCCCCCceEcc-
Confidence 999888754 347899999987632 12222322 245677877
Q ss_pred CCCcEEEee-CCCeEEEee
Q 018858 330 ESENLVVCD-TSKVVKVYS 347 (349)
Q Consensus 330 ~~~~l~~~~-~dg~i~iw~ 347 (349)
+++.|+.++ .++...+|.
T Consensus 361 dg~~l~~~s~~~~~~~l~~ 379 (396)
T 3c5m_A 361 NDDGVLFTSDFEGVPAIYI 379 (396)
T ss_dssp TSSEEEEEECTTSSCEEEE
T ss_pred CCCeEEEEecCCCCceEEE
Confidence 787777765 456555654
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-17 Score=139.29 Aligned_cols=246 Identities=12% Similarity=0.128 Sum_probs=151.2
Q ss_pred ceEEEe----CCCCcEEEEEC--CCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCC----CeEEEEEccCC-Cccccee
Q 018858 29 GFVASS----GEDGCICWFDL--RSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG----KEVKSFDVHMP-ASWRPLE 97 (349)
Q Consensus 29 ~~l~t~----~~dg~i~vwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~-~~~~~~~ 97 (349)
.+++.| +.++.|.+|++ .+++.......+...+..++|+|++++|++++.+ +.|.+|++... .....+.
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~ 93 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLN 93 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEE
T ss_pred eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEee
Confidence 455555 34578999876 4565433222266777889999999999999875 79999998753 2233444
Q ss_pred eccCcccceEEEEEccCCCEEEEEc-CCCcEEEEEcCCceEeceec----c-c--------cccceeEEEEccCCCCCCC
Q 018858 98 SYNYNKEEINQIVCNPKSSFLACAD-DGGDVKIIDIRQHCLYKSLR----A-G--------HSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 98 ~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~----~-~--------~~~~v~~~~~~~~~~~~~~ 163 (349)
....+......+++ +++++++++ .++.|.+|++.....+..+. . + +...+.+++|+|
T Consensus 94 ~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp------- 164 (361)
T 3scy_A 94 TQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP------- 164 (361)
T ss_dssp EEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT-------
T ss_pred EeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC-------
Confidence 44333456677777 777776655 67899999997543322211 0 0 011234566666
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEE-cCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEE
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA-KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE 242 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (349)
++++++++ ..++.|.+|++......... +.+
T Consensus 165 -----------------------------dg~~l~~~~~~~~~v~v~~~~~~~~~~~~-----------------~~l-- 196 (361)
T 3scy_A 165 -----------------------------DGKYLLADDLGTDQIHKFNINPNANADNK-----------------EKF-- 196 (361)
T ss_dssp -----------------------------TSSEEEEEETTTTEEEEEEECTTCCTTTC-----------------CCC--
T ss_pred -----------------------------CCCEEEEEeCCCCEEEEEEEcCCCCcccc-----------------cce--
Confidence 78866554 46889999998853100000 000
Q ss_pred eeeeeecCcee-eeeeeeecCCCcceEEEEEeeecCCccEEEEee-CCCeEEEEecCCCcceecccccceeeeccccccc
Q 018858 243 MEILDQSGGKR-LHLDYSVGGHTAAASCVAFSMFGERGKYLISGG-NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKK 320 (349)
Q Consensus 243 ~~~~~~~~~~~-~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (349)
... ....... .+...+..++|+ |+|+++++++ .++.|++|++.++..... ..+.....+...
T Consensus 197 --------~~~~~~~~~~~-~~~~~~~~~~~s---pdg~~l~v~~~~~~~v~v~~~~~g~~~~~----~~~~~~~~~~~~ 260 (361)
T 3scy_A 197 --------LTKGTPEAFKV-APGSGPRHLIFN---SDGKFAYLINEIGGTVIAFRYADGMLDEI----QTVAADTVNAQG 260 (361)
T ss_dssp --------EEEEEEEEEEC-CTTCCEEEEEEC---TTSSEEEEEETTTCEEEEEEEETTEEEEE----EEEESCSSCCCC
T ss_pred --------eecccccceec-CCCCCCeEEEEc---CCCCEEEEEcCCCCeEEEEEecCCceEEe----EEEecCCCCCCC
Confidence 000 0011112 233456889999 8999887777 689999999986532100 111122234455
Q ss_pred eEEEEeecCCCCcEEEeeC--CCeEEEeeC
Q 018858 321 VNWLCTTPTESENLVVCDT--SKVVKVYSI 348 (349)
Q Consensus 321 v~~~~~~~~~~~~l~~~~~--dg~i~iw~~ 348 (349)
+..++|+| ++++|+++.. ++.|.+|++
T Consensus 261 ~~~i~~sp-dg~~l~v~~~~~~~~i~v~~~ 289 (361)
T 3scy_A 261 SGDIHLSP-DGKYLYASNRLKADGVAIFKV 289 (361)
T ss_dssp EEEEEECT-TSSEEEEEECSSSCEEEEEEE
T ss_pred cccEEECC-CCCEEEEECCCCCCEEEEEEE
Confidence 68999988 8888877765 589999986
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.81 E-value=2.8e-17 Score=137.15 Aligned_cols=269 Identities=9% Similarity=-0.038 Sum_probs=177.4
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeC----------CCCcEEEEECCCCcEEEEeecC------CCCeEEEEEe
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSG----------EDGCICWFDLRSKDVQLVTDVG------NGPVTSLCFK 67 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~----------~dg~i~vwd~~~~~~~~~~~~~------~~~v~~~~~~ 67 (349)
+++.+.++..+..+ .++|+|+ +++++++. .++.|.+||..+++.+..+... ......++++
T Consensus 40 t~~~~~~i~~g~~p--~i~~spd-g~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~s 116 (361)
T 2oiz_A 40 NGKFLGMVPTAFNG--HVQVSND-GKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQT 116 (361)
T ss_dssp TCCEEEEEECCEEE--EEEECTT-SSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEEC
T ss_pred CCeEEEEecCCCCC--ceEECCC-CCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEEC
Confidence 55667778777776 8999998 88888775 3577999999999988877643 2456779999
Q ss_pred cCCCEEEEEeC--CCeEEEEEccCCCcccceee-ccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCC-ceEece--
Q 018858 68 SGNEDIIYVSS--GKEVKSFDVHMPASWRPLES-YNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQ-HCLYKS-- 140 (349)
Q Consensus 68 ~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~-~~~~~~-- 140 (349)
|+|++|+++.. ++.|.+||+.+++. +.. +.. .....+.+.|++ ..+++.+.||.+.+|++.. ++....
T Consensus 117 pdg~~l~v~n~~~~~~v~v~d~~~~~~---~~~~i~~--~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~ 191 (361)
T 2oiz_A 117 TDGKFIVLQNASPATSIGIVDVAKGDY---VEDVTAA--AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSR 191 (361)
T ss_dssp TTSSEEEEEEESSSEEEEEEETTTTEE---EEEEGGG--TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEE
T ss_pred CCCCEEEEECCCCCCeEEEEECCCCcE---EEEEecC--CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeecc
Confidence 99999998874 57999999997643 333 321 222335667765 6778888999999999864 544311
Q ss_pred ----eccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCcee
Q 018858 141 ----LRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN 216 (349)
Q Consensus 141 ----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 216 (349)
+. ....+ ..+.+.| ++..++..+.++.+.++|+.....
T Consensus 192 ~~~~~~-~~~~~-~~~~~~~------------------------------------~g~~~~~~~~~~~v~v~d~~~~~~ 233 (361)
T 2oiz_A 192 SKQMFS-VKDDP-IFIAPAL------------------------------------DKDKAHFVSYYGNVYSADFSGDEV 233 (361)
T ss_dssp CCCCSC-TTTSC-BCSCCEE------------------------------------CSSEEEEEBTTSEEEEEECSSSSC
T ss_pred ccceEc-CCCCc-eEEEecc------------------------------------cCCEEEEEeCCCeEEEEEecCCCc
Confidence 11 11111 1112223 556666677889999999875432
Q ss_pred ee--ecC--C-------CCCCccceeeeeccccEEEEeeeee------------e--cCceeeeeeeeecCCCcceEEEE
Q 018858 217 IS--RSK--S-------TTKPLKGSQSTSKVNIRDAEMEILD------------Q--SGGKRLHLDYSVGGHTAAASCVA 271 (349)
Q Consensus 217 ~~--~~~--~-------~~~~~~~~~~~~~~~~~~~~~~~~~------------~--~~~~~~~~~~~~~~h~~~i~~i~ 271 (349)
.. ... . ........++++|+++.+.+....+ . ......+.+..+..+. +..++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia 311 (361)
T 2oiz_A 234 KVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMT 311 (361)
T ss_dssp EEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEE
T ss_pred eecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEE
Confidence 11 100 0 0012233479999988877543201 1 1122345566666665 89999
Q ss_pred EeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCC
Q 018858 272 FSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESE 332 (349)
Q Consensus 272 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 332 (349)
|+ |+|++|++++. +.|.+||..+++. +++..+..+......+++.| +|.
T Consensus 312 ~s---pdg~~l~v~n~-~~v~v~D~~t~~l-------~~~~~i~~~G~~P~~~~~~p-~G~ 360 (361)
T 2oiz_A 312 ID---QQRNLMLTLDG-GNVNVYDISQPEP-------KLLRTIEGAAEASLQVQFHP-VGG 360 (361)
T ss_dssp EE---TTTTEEEEECS-SCEEEEECSSSSC-------EEEEEETTSCSSEEEEEECC-CSC
T ss_pred EC---CCCCEEEEeCC-CeEEEEECCCCcc-------eeeEEeccCCCCcEEEEecC-CCC
Confidence 99 89999998887 9999999998621 23334345667778888888 553
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.8e-16 Score=129.93 Aligned_cols=247 Identities=10% Similarity=0.071 Sum_probs=163.6
Q ss_pred CCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCC----CeE
Q 018858 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG----KEV 82 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i 82 (349)
....+..+...+.+++|+|+ +++++++..++.|.+||.++++.......+...+.+++++|+++++++...+ +.|
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~-g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i 114 (333)
T 2dg1_A 36 PWLEISKKGLQLEGLNFDRQ-GQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGI 114 (333)
T ss_dssp EEEEEESSCCCEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEE
T ss_pred eeEEEeccCccccCcEECCC-CCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceE
Confidence 34456666677899999998 7888888888999999998887655444566789999999999877777666 689
Q ss_pred EEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcC------CCcEEEEEcCCceEeceeccccccceeEEEEcc
Q 018858 83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD------GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
.+||.+++.....+.. ......+..++++|+++++++... .+.|..+|..+++... +. .....+..++|+|
T Consensus 115 ~~~d~~~~~~~~~~~~-~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~-~~~~~~~~i~~~~ 191 (333)
T 2dg1_A 115 FAATENGDNLQDIIED-LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-II-QNISVANGIALST 191 (333)
T ss_dssp EEECTTSCSCEEEECS-SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EE-EEESSEEEEEECT
T ss_pred EEEeCCCCEEEEEEcc-CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-ee-cCCCcccceEECC
Confidence 9999886543212211 123356889999999987776653 3456667765544432 22 2333467788888
Q ss_pred CCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEE-EEEcCCCeEEEEEccC-ceeeeecCCCCCCccceeeee
Q 018858 157 WKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC-VVAKGDGVVDVINIES-ELNISRSKSTTKPLKGSQSTS 234 (349)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~ 234 (349)
+++.+ ++...++.|.+||+.. +......
T Consensus 192 ------------------------------------dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~-------------- 221 (333)
T 2dg1_A 192 ------------------------------------DEKVLWVTETTANRLHRIALEDDGVTIQPF-------------- 221 (333)
T ss_dssp ------------------------------------TSSEEEEEEGGGTEEEEEEECTTSSSEEEE--------------
T ss_pred ------------------------------------CCCEEEEEeCCCCeEEEEEecCCCcCcccc--------------
Confidence 77755 4556678999999863 1100000
Q ss_pred ccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeec
Q 018858 235 KVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKN 314 (349)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 314 (349)
.......+.++ ..+..++++ ++|+++++...++.|++||... ..+..+
T Consensus 222 ------------------~~~~~~~~~~~-~~~~~i~~d---~~G~l~v~~~~~~~v~~~d~~g----------~~~~~~ 269 (333)
T 2dg1_A 222 ------------------GATIPYYFTGH-EGPDSCCID---SDDNLYVAMYGQGRVLVFNKRG----------YPIGQI 269 (333)
T ss_dssp ------------------EEEEEEECCSS-SEEEEEEEB---TTCCEEEEEETTTEEEEECTTS----------CEEEEE
T ss_pred ------------------cceEEEecCCC-CCCCceEEC---CCCCEEEEEcCCCEEEEECCCC----------CEEEEE
Confidence 00111122222 457789999 8999888887889999999853 222222
Q ss_pred cccc------cceEEEEeecCCCCcEEEeeCC
Q 018858 315 INLN------KKVNWLCTTPTESENLVVCDTS 340 (349)
Q Consensus 315 ~~~~------~~v~~~~~~~~~~~~l~~~~~d 340 (349)
..+. ..+.+++|.| +++.|+.++.+
T Consensus 270 ~~~~~~~g~~~~~~~~~~~~-dg~~L~v~~~~ 300 (333)
T 2dg1_A 270 LIPGRDEGHMLRSTHPQFIP-GTNQLIICSND 300 (333)
T ss_dssp ECTTGGGTCSCBCCEEEECT-TSCEEEEEEEC
T ss_pred EcCCCccccccCcceEEECC-CCCEEEEEeCc
Confidence 2222 2688999976 66667666544
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.81 E-value=9.1e-17 Score=134.03 Aligned_cols=257 Identities=12% Similarity=0.077 Sum_probs=163.4
Q ss_pred CCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeC----------CCeEEEEEccCCCcccceeeccC---c
Q 018858 36 EDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS----------GKEVKSFDVHMPASWRPLESYNY---N 102 (349)
Q Consensus 36 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~---~ 102 (349)
.|+.|.+||..+++.+..+..+..+ .++|+|+++++++++. ++.|.+||..+.+....+..... +
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~ 106 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQG 106 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCB
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccccc
Confidence 3679999999999998888876555 8999999999998863 56899999987655444433211 1
Q ss_pred ccceEEEEEccCCCEEEEEcC--CCcEEEEEcCCceEece-eccccccceeEEEEccCCCCCCCCCCCCCCccccCCcee
Q 018858 103 KEEINQIVCNPKSSFLACADD--GGDVKIIDIRQHCLYKS-LRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFV 179 (349)
Q Consensus 103 ~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (349)
......++++|++++|+++.. ++.|.+||+.+++.+.. +. ... ...+.+.|+
T Consensus 107 g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~--~~~-~~~v~~~p~---------------------- 161 (361)
T 2oiz_A 107 LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTA--AAG-CWSVIPQPN---------------------- 161 (361)
T ss_dssp CCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGG--GTT-EEEEEECTT----------------------
T ss_pred CCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEec--CCC-cceeEEcCC----------------------
Confidence 234677999999999988764 57899999999988877 55 221 223456662
Q ss_pred EEeecCcccccCCCCcEEEEEcCCCeEEEEEccC-ceeeeecC----CCCCCccceeeeeccccEEEEeee------eee
Q 018858 180 HAIAIPDADMLDKTNKICVVAKGDGVVDVINIES-ELNISRSK----STTKPLKGSQSTSKVNIRDAEMEI------LDQ 248 (349)
Q Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 248 (349)
....+++.+.||.+.+|++.. ++...... .........+.+++++..++.... .+.
T Consensus 162 -------------~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~ 228 (361)
T 2oiz_A 162 -------------RPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADF 228 (361)
T ss_dssp -------------SSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEEC
T ss_pred -------------CCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEe
Confidence 236677788899999998864 33221100 000111122333455544332110 000
Q ss_pred cCceeeeeeeeec--C----C----CcceEEEEEeeecCCccEEEEeeC-----------CCeEEEEecCCCcceecccc
Q 018858 249 SGGKRLHLDYSVG--G----H----TAAASCVAFSMFGERGKYLISGGN-----------DKLVKVWDCSRFQGVQTSIN 307 (349)
Q Consensus 249 ~~~~~~~~~~~~~--~----h----~~~i~~i~~~~~~~~~~~l~s~~~-----------d~~i~vwd~~~~~~~~~~~~ 307 (349)
... .......+. . + ......++++ |+++.++++.. .+.|.+||+.+.
T Consensus 229 ~~~-~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~---~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~-------- 296 (361)
T 2oiz_A 229 SGD-EVKVDGPWSLLNDEDKAKNWVPGGYNLVGLH---RASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK-------- 296 (361)
T ss_dssp SSS-SCEEEEEEESCCHHHHHTTCEECCSSCEEEE---TTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT--------
T ss_pred cCC-CceecccccccCccccccccccCCeeEEEEe---cCCCeEEEEEccCCCcccccCCCceEEEEECCCC--------
Confidence 000 000001100 0 0 0111126788 88777766543 358999999997
Q ss_pred cceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 308 NDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 308 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
+.+..+..+. +.+++|+| ++++|++++. +.|.+||+.
T Consensus 297 -~~v~~i~~~~--p~~ia~sp-dg~~l~v~n~-~~v~v~D~~ 333 (361)
T 2oiz_A 297 -QRVARIPGRD--ALSMTIDQ-QRNLMLTLDG-GNVNVYDIS 333 (361)
T ss_dssp -EEEEEEECTT--CCEEEEET-TTTEEEEECS-SCEEEEECS
T ss_pred -cEEEEEecCC--eeEEEECC-CCCEEEEeCC-CeEEEEECC
Confidence 5555555555 89999988 8888988887 999999963
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=7.9e-18 Score=152.32 Aligned_cols=250 Identities=10% Similarity=0.075 Sum_probs=168.8
Q ss_pred CeeeeCCceeeeEEEEecCCCceEEEe--CCCCcEEEEECCCCcEEEEeecCCCCeE---------EEEEe--cCCCE-E
Q 018858 8 PRRLRGHKATATCCIASRDRPGFVASS--GEDGCICWFDLRSKDVQLVTDVGNGPVT---------SLCFK--SGNED-I 73 (349)
Q Consensus 8 ~~~l~~h~~~i~~~~~~~~~~~~l~t~--~~dg~i~vwd~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~-l 73 (349)
.+.+.+|...+..++++++ .-+++.. +.++...||....+.....+..+...+. ...|+ |+|+. |
T Consensus 16 ~~~~~~~~~~~~~~~~s~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~l 94 (662)
T 3azo_A 16 AALVASRSGRPACVGAVGD-EVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLL 94 (662)
T ss_dssp HHHHHHTCSCCEEEEEETT-EEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEE
T ss_pred HHHHhhcCCccceeEEcCC-eEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEE
Confidence 3456789999999999987 6666666 6688899998654444566666666665 56666 99998 7
Q ss_pred EEEeC-CCeEEEEEcc--C-CCcccceeeccC--cccceEEEEEccCCCEEEEEcCC----------CcEEEEEcCC---
Q 018858 74 IYVSS-GKEVKSFDVH--M-PASWRPLESYNY--NKEEINQIVCNPKSSFLACADDG----------GDVKIIDIRQ--- 134 (349)
Q Consensus 74 ~~~~~-dg~i~iwd~~--~-~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~--- 134 (349)
+.++. +..|.++++. . +. ...+..... +...+..++|+|||+.|++++.+ ..|++||+.+
T Consensus 95 a~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 173 (662)
T 3azo_A 95 VFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAA 173 (662)
T ss_dssp EEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTT
T ss_pred EEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcc
Confidence 77664 4567666665 2 32 222222110 44678899999999999988876 5799999987
Q ss_pred ---ceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCC--------
Q 018858 135 ---HCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD-------- 203 (349)
Q Consensus 135 ---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-------- 203 (349)
++...... .+...+..++|+| +|+.|+.++.+
T Consensus 174 ~~~~~~~~l~~-~~~~~~~~~~~Sp------------------------------------DG~~la~~~~~~~~~~~~~ 216 (662)
T 3azo_A 174 ADRSAVRELSD-DAHRFVTGPRLSP------------------------------------DGRQAVWLAWDHPRMPWEG 216 (662)
T ss_dssp TCGGGSEESSC-SCSSEECCCEECT------------------------------------TSSEEEEEEECTTCCTTTC
T ss_pred ccCCceeEEEe-cCCCcccCceECC------------------------------------CCCEEEEEECCCCCCCCCC
Confidence 55433331 2345677888998 88988877644
Q ss_pred CeEEEEEcc-CceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEE
Q 018858 204 GVVDVINIE-SELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYL 282 (349)
Q Consensus 204 g~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l 282 (349)
..|.+||+. ++.. ........+|...+..+.|+ |||+++
T Consensus 217 ~~i~~~d~~~~g~~-------------------------------------~~~~~l~~~~~~~~~~~~~s---pdg~l~ 256 (662)
T 3azo_A 217 TELKTARVTEDGRF-------------------------------------ADTRTLLGGPEEAIAQAEWA---PDGSLI 256 (662)
T ss_dssp EEEEEEEECTTSCE-------------------------------------EEEEEEEEETTBCEEEEEEC---TTSCEE
T ss_pred cEEEEEEECCCCcc-------------------------------------cccEEeCCCCCceEcceEEC---CCCeEE
Confidence 379999988 3210 01112223356778999999 899988
Q ss_pred EEeeCCC--eEEEEecCCCcceecccccceeeeccccccc--------eEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 283 ISGGNDK--LVKVWDCSRFQGVQTSINNDLLIKNINLNKK--------VNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 283 ~s~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
++++.|+ .|++||+.+++ .......+... +..+++++ +++++++++. +.++||.
T Consensus 257 ~~~~~~~~~~l~~~~~~~~~---------~~~l~~~~~~~~~p~w~~~~~~~~~~~-~~~~~~~~~~-~~~~l~~ 320 (662)
T 3azo_A 257 VATDRTGWWNLHRVDPATGA---------ATQLCRREEEFAGPLWTPGMRWFAPLA-NGLIAVVHGK-GAAVLGI 320 (662)
T ss_dssp EEECTTSSCEEEEECTTTCC---------EEESSCCSSBSSCCCCSTTCCSEEECT-TSCEEEEEBS-SSCEEEE
T ss_pred EEECCCCCeEEEEEECCCCc---------eeecccccccccCccccccCceEeEeC-CCEEEEEEEc-CccEEEE
Confidence 8888888 67777765552 22122222211 45678876 7778888888 9999994
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=7.5e-17 Score=146.84 Aligned_cols=245 Identities=7% Similarity=-0.046 Sum_probs=162.6
Q ss_pred CCceeeeEEEEecCCCceEEEeCCCC-----cEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCe------
Q 018858 13 GHKATATCCIASRDRPGFVASSGEDG-----CICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKE------ 81 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~t~~~dg-----~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~------ 81 (349)
+|...+..++|||+ +++|+.+..++ .|++||+.+++.+.....+ ..+..++|+|||+.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPD-g~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~ 199 (710)
T 2xdw_A 122 DGTVALRGYAFSED-GEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDG 199 (710)
T ss_dssp TSCEEEEEEEECTT-SSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSS
T ss_pred CCCEEEEEEEECCC-CCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccc
Confidence 35557889999999 78887654332 8999999999876533222 22667999999999999987765
Q ss_pred ----------EEEEEccCCCcc-cceeeccCcccceEEEEEccCCCEEEEEcC-----CCcEEEEEcCC------ce-Ee
Q 018858 82 ----------VKSFDVHMPASW-RPLESYNYNKEEINQIVCNPKSSFLACADD-----GGDVKIIDIRQ------HC-LY 138 (349)
Q Consensus 82 ----------i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~------~~-~~ 138 (349)
|++|++.+++.. ..+.....+...+..+.|+|++++|+..+. +..|++||+.+ +. ..
T Consensus 200 ~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 279 (710)
T 2xdw_A 200 TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW 279 (710)
T ss_dssp SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC
T ss_pred cccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccce
Confidence 999999876422 122222223455788999999999987664 56799999976 42 23
Q ss_pred ceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcC----CCeEEEEEccCc
Q 018858 139 KSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG----DGVVDVINIESE 214 (349)
Q Consensus 139 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~ 214 (349)
..+. .+...+.. .|+| +++.|+..+. .+.|.+||+.++
T Consensus 280 ~~l~-~~~~~~~~-~~s~------------------------------------dg~~l~~~s~~~~~~~~l~~~d~~~~ 321 (710)
T 2xdw_A 280 VKLI-DNFEGEYD-YVTN------------------------------------EGTVFTFKTNRHSPNYRLINIDFTDP 321 (710)
T ss_dssp EEEE-CSSSSCEE-EEEE------------------------------------ETTEEEEEECTTCTTCEEEEEETTSC
T ss_pred EEee-CCCCcEEE-EEec------------------------------------cCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 4444 34444433 4667 5666665543 236899998763
Q ss_pred eeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCC--cceEEEEEeeecCCccEEEEeeCCCe--
Q 018858 215 LNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHT--AAASCVAFSMFGERGKYLISGGNDKL-- 290 (349)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~i~~i~~~~~~~~~~~l~s~~~d~~-- 290 (349)
.. .....+..|. ..+..+.|+ +++.++++...|+.
T Consensus 322 ~~--------------------------------------~~~~~l~~~~~~~~~~~~~~~---~~~~lv~~~~~~g~~~ 360 (710)
T 2xdw_A 322 EE--------------------------------------SKWKVLVPEHEKDVLEWVACV---RSNFLVLCYLHDVKNT 360 (710)
T ss_dssp CG--------------------------------------GGCEEEECCCSSCEEEEEEEE---TTTEEEEEEEETTEEE
T ss_pred Cc--------------------------------------ccceeccCCCCCCeEEEEEEE---cCCEEEEEEEECCEEE
Confidence 10 0112233333 267788888 78888888888875
Q ss_pred EEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEE-Eee---CCCeEEEeeC
Q 018858 291 VKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLV-VCD---TSKVVKVYSI 348 (349)
Q Consensus 291 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~---~dg~i~iw~~ 348 (349)
|++|++.++ ..+..+..+.+.+..++++| +++.++ +.+ ..+.|+.||+
T Consensus 361 l~~~~~~~g---------~~~~~l~~~~~~v~~~~~s~-d~~~l~~~~ss~~~P~~i~~~d~ 412 (710)
T 2xdw_A 361 LQLHDLATG---------ALLKIFPLEVGSVVGYSGQK-KDTEIFYQFTSFLSPGIIYHCDL 412 (710)
T ss_dssp EEEEETTTC---------CEEEEECCCSSEEEEEECCT-TCSEEEEEEECSSCCCEEEEEET
T ss_pred EEEEECCCC---------CEEEecCCCCceEEEEecCC-CCCEEEEEEeCCCCCCEEEEEEC
Confidence 566777555 33334445567788888887 555444 333 4578999986
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.79 E-value=4.1e-17 Score=147.62 Aligned_cols=251 Identities=8% Similarity=-0.022 Sum_probs=158.4
Q ss_pred CCCeeeeCCceeee---------EEEEe--cCCCce-EEEe-CCCCcEEEEECC--C-CcEEEEeec-----CCCCeEEE
Q 018858 6 AKPRRLRGHKATAT---------CCIAS--RDRPGF-VASS-GEDGCICWFDLR--S-KDVQLVTDV-----GNGPVTSL 64 (349)
Q Consensus 6 ~~~~~l~~h~~~i~---------~~~~~--~~~~~~-l~t~-~~dg~i~vwd~~--~-~~~~~~~~~-----~~~~v~~~ 64 (349)
...+.+..|...+. ...|+ |+ ++. |+.+ ..+..|.++++. . ++ ...+.. |...+..+
T Consensus 58 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPD-g~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~ 135 (662)
T 3azo_A 58 GAEESALPAPWNVRNRVFEYSGFPWAGVPRPA-GGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADP 135 (662)
T ss_dssp SCEEESSCTTCCBCCCGGGTCCCCEEEECCSS-SSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEE
T ss_pred CCcceeCCCCccccccccccCCccceeeeecC-CCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCc
Confidence 44566777776666 66666 88 565 5544 446677788776 3 44 344444 56678899
Q ss_pred EEecCCCEEEEEeCC----------CeEEEEEccC------CCcccceeecc-CcccceEEEEEccCCCEEEEEcCC---
Q 018858 65 CFKSGNEDIIYVSSG----------KEVKSFDVHM------PASWRPLESYN-YNKEEINQIVCNPKSSFLACADDG--- 124 (349)
Q Consensus 65 ~~~~~~~~l~~~~~d----------g~i~iwd~~~------~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d--- 124 (349)
+|+|+|+.|++++.+ ..|++||+.+ ++ . ..+. .+...+..++|+|||++|+.++.+
T Consensus 136 ~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~---~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~ 211 (662)
T 3azo_A 136 VLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA-V---RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPR 211 (662)
T ss_dssp EEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG-S---EESSCSCSSEECCCEECTTSSEEEEEEECTTC
T ss_pred EECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc-e---eEEEecCCCcccCceECCCCCEEEEEECCCCC
Confidence 999999999998876 5899999986 32 2 2222 334667889999999999877754
Q ss_pred -----CcEEEEEcC-Cc---eEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCc
Q 018858 125 -----GDVKIIDIR-QH---CLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK 195 (349)
Q Consensus 125 -----g~i~i~d~~-~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (349)
..|++||+. ++ +...... .+...+..+.|+| +++
T Consensus 212 ~~~~~~~i~~~d~~~~g~~~~~~~l~~-~~~~~~~~~~~sp------------------------------------dg~ 254 (662)
T 3azo_A 212 MPWEGTELKTARVTEDGRFADTRTLLG-GPEEAIAQAEWAP------------------------------------DGS 254 (662)
T ss_dssp CTTTCEEEEEEEECTTSCEEEEEEEEE-ETTBCEEEEEECT------------------------------------TSC
T ss_pred CCCCCcEEEEEEECCCCcccccEEeCC-CCCceEcceEECC------------------------------------CCe
Confidence 379999998 56 4333333 4567889999999 788
Q ss_pred EEEEEcCCC--eEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEe
Q 018858 196 ICVVAKGDG--VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFS 273 (349)
Q Consensus 196 ~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~ 273 (349)
+++++..++ .|.+||+.+++......... . .. ...-...+..++|+
T Consensus 255 l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~------------------------------~-~~-~p~w~~~~~~~~~~ 302 (662)
T 3azo_A 255 LIVATDRTGWWNLHRVDPATGAATQLCRREE------------------------------E-FA-GPLWTPGMRWFAPL 302 (662)
T ss_dssp EEEEECTTSSCEEEEECTTTCCEEESSCCSS------------------------------B-SS-CCCCSTTCCSEEEC
T ss_pred EEEEECCCCCeEEEEEECCCCceeecccccc------------------------------c-cc-CccccccCceEeEe
Confidence 888888888 56666654432111111000 0 00 00000114568888
Q ss_pred eecCCccEEEEeeCCCeEEEE--ecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEe-eCCCeEEEe
Q 018858 274 MFGERGKYLISGGNDKLVKVW--DCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVC-DTSKVVKVY 346 (349)
Q Consensus 274 ~~~~~~~~l~s~~~d~~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~iw 346 (349)
++++++++++. +.++|| |+.++ .+..+..+...+..+. ++..+.+++++ +.+....+|
T Consensus 303 ---~~~~~~~~~~~-~~~~l~~~d~~~~----------~~~~l~~~~~~~~~~~-s~~~~~~~~~~~~~~~~~~i~ 363 (662)
T 3azo_A 303 ---ANGLIAVVHGK-GAAVLGILDPESG----------ELVDAAGPWTEWAATL-TVSGTRAVGVAASPRTAYEVV 363 (662)
T ss_dssp ---TTSCEEEEEBS-SSCEEEEEETTTT----------EEEECCSSCCEEEEEE-EEETTEEEEEEEETTEEEEEE
T ss_pred ---CCCEEEEEEEc-CccEEEEEECCCC----------cEEEecCCCCeEEEEE-ecCCCEEEEEEcCCCCCCEEE
Confidence 89999999998 999999 54443 2345556666677661 33222333333 455444444
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-16 Score=132.59 Aligned_cols=257 Identities=11% Similarity=-0.031 Sum_probs=165.2
Q ss_pred ceeeeEEEEecCCCceEEEe---------CCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCC---C--
Q 018858 15 KATATCCIASRDRPGFVASS---------GEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG---K-- 80 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~---------~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g-- 80 (349)
...+..+++ + |+.++.. ..++.|.+||+.+++... + ..+..++|+|+|++|+.++.+ +
T Consensus 14 ~~~~~~~~~--d-G~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~ 85 (347)
T 2gop_A 14 FAYLSDPRT--K-GELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVS 85 (347)
T ss_dssp SCEEEEEEE--E-TTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEE
T ss_pred eEEcccceE--C-CcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcc
Confidence 345677777 5 6666643 125789999999887543 3 468889999999999987753 3
Q ss_pred eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCC---------------------------CcEEEEEcC
Q 018858 81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDG---------------------------GDVKIIDIR 133 (349)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------------------------g~i~i~d~~ 133 (349)
.|.+|++.+++. ..+... .. +..++|+|+++.|+.++.+ ..|++||+.
T Consensus 86 ~l~~~~~~~g~~-~~l~~~---~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~ 160 (347)
T 2gop_A 86 EIWVADLETLSS-KKILEA---KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTE 160 (347)
T ss_dssp EEEEEETTTTEE-EEEEEE---SE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETT
T ss_pred eEEEEECCCCce-EEEEcC---CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECC
Confidence 477788876532 222222 23 8899999999988877632 569999999
Q ss_pred CceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCC-------eE
Q 018858 134 QHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG-------VV 206 (349)
Q Consensus 134 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-------~i 206 (349)
+++.+..+. . . .+..+.|+| ++ +++++..++ ..
T Consensus 161 ~~~~~~~l~-~-~-~~~~~~~sp------------------------------------dg-~~~~~~~~~~~~~~~~~~ 200 (347)
T 2gop_A 161 SEEVIEEFE-K-P-RFSSGIWHR------------------------------------DK-IVVNVPHREIIPQYFKFW 200 (347)
T ss_dssp TTEEEEEEE-E-E-TTCEEEEET------------------------------------TE-EEEEEECCCSSCCSSCCE
T ss_pred CCeEEeeec-C-C-CcccccCCC------------------------------------Ce-EEEEEecccccccccccc
Confidence 887756666 3 3 788899999 67 666665432 33
Q ss_pred EEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeee---------cCceeeeeeeeecCCCcceEE-EEEeeec
Q 018858 207 DVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ---------SGGKRLHLDYSVGGHTAAASC-VAFSMFG 276 (349)
Q Consensus 207 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~h~~~i~~-i~~~~~~ 276 (349)
.+|.+.+++....... ... ..++|+|+.+++.+.... ......+.......|...+.. +.|+
T Consensus 201 ~l~~~d~~~~~~l~~~---~~~--~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~~~~~~~~~~~~s--- 272 (347)
T 2gop_A 201 DIYIWEDGKEEKMFEK---VSF--YAVDSDGERILLYGKPEKKYMSEHNKLYIYDGKEVMGILDEVDRGVGQAKIKD--- 272 (347)
T ss_dssp EEEEEETTEEEEEEEE---ESE--EEEEECSSCEEEEECCSSSCCCSSCEEEEECSSCEEESSTTCCSEEEEEEEET---
T ss_pred cEEEeCCCceEEeccC---cce--eeECCCCCEEEEEEccccCCccccceEEEECCCceEeccccCCcccCCccEEc---
Confidence 4444434433222221 222 234999998886543221 000011222223345566775 6764
Q ss_pred CCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeE-EEeeC
Q 018858 277 ERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVV-KVYSI 348 (349)
Q Consensus 277 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i-~iw~~ 348 (349)
++ ++++++.++.+++| +.++ ... ....+...|.+++|+| .++++++.++.. .+|.+
T Consensus 273 -dg-~~~~~~~~~~~~l~-~~~g---------~~~-~~~~~~~~v~~~~~s~---~~~~~~~~~~~~~~l~~~ 329 (347)
T 2gop_A 273 -GK-VYFTLFEEGSVNLY-IWDG---------EIK-PIAKGRHWIMGFDVDE---IVVYLKETATRLRELFTW 329 (347)
T ss_dssp -TE-EEEEEEETTEEEEE-EESS---------SEE-EEECSSSEEEEEEESS---SEEEEEECSSSCCEEEEE
T ss_pred -Cc-EEEEEecCCcEEEE-EcCC---------ceE-EEecCCCeEEeeeeeC---cEEEEEcCCCChHHheEe
Confidence 66 88899999999999 8743 222 2334567889999977 477777777654 77754
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.79 E-value=3.6e-16 Score=125.27 Aligned_cols=238 Identities=9% Similarity=-0.036 Sum_probs=161.0
Q ss_pred eeeEEEEecCCCceEE-EeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccc
Q 018858 17 TATCCIASRDRPGFVA-SSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRP 95 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~-t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 95 (349)
...+++++++ +++++ +...++.|.+||..+.........+...+.+++++++++.+++.. ++.|.+||...... ..
T Consensus 25 ~p~~i~~~~~-g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSA-GNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-TV 101 (270)
T ss_dssp CEEEEEECTT-CCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-EE
T ss_pred CccceEECCC-CCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-ee
Confidence 6678999998 67776 556788999999765543322222335678899999998665555 88999999875322 11
Q ss_pred eeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccC
Q 018858 96 LESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYN 175 (349)
Q Consensus 96 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (349)
+. ......+..+++.++++.+++...++.|.+|+..+........ .....+.+++++|
T Consensus 102 ~~--~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~-~~~~~p~~i~~~~------------------- 159 (270)
T 1rwi_B 102 LP--FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF-TGLNDPDGVAVDN------------------- 159 (270)
T ss_dssp CC--CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCC-CSCCSCCCEEECT-------------------
T ss_pred ee--cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeecc-ccCCCceeEEEeC-------------------
Confidence 11 1122568899999999888877778899999765543322222 2234567788887
Q ss_pred CceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeee
Q 018858 176 PAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLH 255 (349)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (349)
+++++++...++.|.+||.....
T Consensus 160 -----------------~g~l~v~~~~~~~i~~~~~~~~~---------------------------------------- 182 (270)
T 1rwi_B 160 -----------------SGNVYVTDTDNNRVVKLEAESNN---------------------------------------- 182 (270)
T ss_dssp -----------------TCCEEEEEGGGTEEEEECTTTCC----------------------------------------
T ss_pred -----------------CCCEEEEECCCCEEEEEecCCCc----------------------------------------
Confidence 78877777778899999987531
Q ss_pred eeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEE
Q 018858 256 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLV 335 (349)
Q Consensus 256 ~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 335 (349)
.......+...+..++++ ++|.++++...++.|++|+..... .......+...+.++++.+ ++++++
T Consensus 183 ~~~~~~~~~~~p~~i~~d---~~g~l~v~~~~~~~v~~~~~~~~~---------~~~~~~~~~~~p~~i~~~~-~g~l~v 249 (270)
T 1rwi_B 183 QVVLPFTDITAPWGIAVD---EAGTVYVTEHNTNQVVKLLAGSTT---------STVLPFTGLNTPLAVAVDS-DRTVYV 249 (270)
T ss_dssp EEECCCSSCCSEEEEEEC---TTCCEEEEETTTSCEEEECTTCSC---------CEECCCCSCSCEEEEEECT-TCCEEE
T ss_pred eEeecccCCCCceEEEEC---CCCCEEEEECCCCcEEEEcCCCCc---------ceeeccCCCCCceeEEECC-CCCEEE
Confidence 111111222567899999 888888877778999999987642 2222223335688999987 777777
Q ss_pred EeeCCCeEEEeeCC
Q 018858 336 VCDTSKVVKVYSIS 349 (349)
Q Consensus 336 ~~~~dg~i~iw~~~ 349 (349)
+...++.|+++++.
T Consensus 250 ~~~~~~~v~~~~~~ 263 (270)
T 1rwi_B 250 ADRGNDRVVKLTSL 263 (270)
T ss_dssp EEGGGTEEEEECCC
T ss_pred EECCCCEEEEEcCC
Confidence 77889999999863
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-16 Score=134.15 Aligned_cols=235 Identities=14% Similarity=0.082 Sum_probs=148.8
Q ss_pred eEEEeCCC--CcEEEEEC--CCCcEEE--Eee-cCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcc-CCCcccceeeccC
Q 018858 30 FVASSGED--GCICWFDL--RSKDVQL--VTD-VGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVH-MPASWRPLESYNY 101 (349)
Q Consensus 30 ~l~t~~~d--g~i~vwd~--~~~~~~~--~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~ 101 (349)
+++.|+.. +.|.+|++ .++++.. ... .....+..++|+|++++|++++.+ .|.+|++. +++... +.....
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~-~~~~~~ 81 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH-EASHPI 81 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE-EEEEEC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE-eeEeec
Confidence 34444432 46887765 4555422 221 233467889999999999998887 99999997 553322 111111
Q ss_pred cccceEEEEEccCCCE--EEEEc-------------CCCcEEEEEcC-CceEeceecc---ccccceeEEEEccCCCCCC
Q 018858 102 NKEEINQIVCNPKSSF--LACAD-------------DGGDVKIIDIR-QHCLYKSLRA---GHSSICSSVQFIPWKPWEG 162 (349)
Q Consensus 102 ~~~~v~~~~~~~~~~~--l~~~~-------------~dg~i~i~d~~-~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~ 162 (349)
. +.+..++|+|++++ ++++. .++.+.+|++. +++....+.. .+...+.+++|+|
T Consensus 82 ~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp------ 154 (365)
T 1jof_A 82 G-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP------ 154 (365)
T ss_dssp C-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT------
T ss_pred C-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC------
Confidence 1 23556899999984 45553 68899999997 4554433320 1345678888888
Q ss_pred CCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEc-CCCeEEEEEcc-CceeeeecCCCCCCccceeeeeccccEE
Q 018858 163 LPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIE-SELNISRSKSTTKPLKGSQSTSKVNIRD 240 (349)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (349)
++++++++. .++.|++|++. +++.
T Consensus 155 ------------------------------dG~~l~~~~~~~~~v~~~~~~~~g~~------------------------ 180 (365)
T 1jof_A 155 ------------------------------TETYLYSADLTANKLWTHRKLASGEV------------------------ 180 (365)
T ss_dssp ------------------------------TSSEEEEEETTTTEEEEEEECTTSCE------------------------
T ss_pred ------------------------------CCCEEEEEcCCCCEEEEEEECCCCCE------------------------
Confidence 788777765 46899999997 4321
Q ss_pred EEeeeeeecCceeeeeeeeec--CCCcceEEEEEeeecCCccEEEEeeC-CCeEEEEecCC--Ccceecccccceeeec-
Q 018858 241 AEMEILDQSGGKRLHLDYSVG--GHTAAASCVAFSMFGERGKYLISGGN-DKLVKVWDCSR--FQGVQTSINNDLLIKN- 314 (349)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~--~h~~~i~~i~~~~~~~~~~~l~s~~~-d~~i~vwd~~~--~~~~~~~~~~~~~~~~- 314 (349)
..+..+. .|...+..++|+ |+|+++++++. ++.|.+|++.. ++..... ..+...
T Consensus 181 --------------~~~~~~~~~~~g~~p~~~~~s---pdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~---~~~~~~~ 240 (365)
T 1jof_A 181 --------------ELVGSVDAPDPGDHPRWVAMH---PTGNYLYALMEAGNRICEYVIDPATHMPVYTH---HSFPLIP 240 (365)
T ss_dssp --------------EEEEEEECSSTTCCEEEEEEC---TTSSEEEEEETTTTEEEEEEECTTTCCEEEEE---EEEESSC
T ss_pred --------------EEeeeEecCCCCCCCCEeEEC---CCCCEEEEEECCCCeEEEEEEeCCCCcEEEcc---ceEEcCC
Confidence 1111222 234568899999 89999888774 68999998763 3211000 011111
Q ss_pred ---ccccc------ceEEEE-eecCCCCcEEEeeCC-C-----eEEEeeC
Q 018858 315 ---INLNK------KVNWLC-TTPTESENLVVCDTS-K-----VVKVYSI 348 (349)
Q Consensus 315 ---~~~~~------~v~~~~-~~~~~~~~l~~~~~d-g-----~i~iw~~ 348 (349)
.+|.. .+..++ |+| +|++|++++.+ . .|.+|++
T Consensus 241 ~~~~g~~~~~~~~~~~~~i~~~sp-dG~~l~v~~~~~~~~~~~~i~v~~~ 289 (365)
T 1jof_A 241 PGIPDRDPETGKGLYRADVCALTF-SGKYMFASSRANKFELQGYIAGFKL 289 (365)
T ss_dssp TTCCCBCTTTSSBSEEEEEEEECT-TSSEEEEEEEESSTTSCCEEEEEEE
T ss_pred CCcCCcccccccccccccEEEECC-CCCEEEEECCCCCCCCCCeEEEEEE
Confidence 12232 578899 877 88888877543 2 8999986
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.78 E-value=4.5e-17 Score=148.95 Aligned_cols=241 Identities=12% Similarity=0.027 Sum_probs=154.1
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeecc--CcccceEEEEEccCCCEEEEEcCC---------CcEE
Q 018858 60 PVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYN--YNKEEINQIVCNPKSSFLACADDG---------GDVK 128 (349)
Q Consensus 60 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~ 128 (349)
....++|+|++++++++ |+.|++||+.+++....+.... ........++|+||+++|+.++.+ +.++
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 35578999999988886 8999999999876533322211 111123458999999999988875 5677
Q ss_pred EEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEE
Q 018858 129 IIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDV 208 (349)
Q Consensus 129 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 208 (349)
+||+.+++... +. .+...+...+|+| +|+.|+.+ .++.|++
T Consensus 96 ~~d~~~~~~~~-l~-~~~~~~~~~~~SP------------------------------------dG~~la~~-~~~~i~~ 136 (740)
T 4a5s_A 96 IYDLNKRQLIT-EE-RIPNNTQWVTWSP------------------------------------VGHKLAYV-WNNDIYV 136 (740)
T ss_dssp EEETTTTEECC-SS-CCCTTEEEEEECS------------------------------------STTCEEEE-ETTEEEE
T ss_pred EEECCCCcEEE-cc-cCCCcceeeEECC------------------------------------CCCEEEEE-ECCeEEE
Confidence 99999988644 55 5677899999999 78888887 4689999
Q ss_pred EEccCceeeeecCCCCC-----------------CccceeeeeccccEEEEeeeeeecCc--------------------
Q 018858 209 INIESELNISRSKSTTK-----------------PLKGSQSTSKVNIRDAEMEILDQSGG-------------------- 251 (349)
Q Consensus 209 ~d~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 251 (349)
|++.++........... .....+.|||||+.|+.....+....
T Consensus 137 ~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~ 216 (740)
T 4a5s_A 137 KIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRV 216 (740)
T ss_dssp ESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEE
T ss_pred EECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceee
Confidence 99987765543322221 12245889999999986432111000
Q ss_pred ---------e--ee----------e---eeeeec------CCCcceEEEEEeeecCCccEEEEee----CCCeEEEEecC
Q 018858 252 ---------K--RL----------H---LDYSVG------GHTAAASCVAFSMFGERGKYLISGG----NDKLVKVWDCS 297 (349)
Q Consensus 252 ---------~--~~----------~---~~~~~~------~h~~~i~~i~~~~~~~~~~~l~s~~----~d~~i~vwd~~ 297 (349)
. .. . ....+. +|...+..++|+ |||+.++... .+..|++||+.
T Consensus 217 ~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ws---pdg~~~~~~~~r~~~~~~i~~~d~~ 293 (740)
T 4a5s_A 217 PYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWA---TQERISLQWLRRIQNYSVMDICDYD 293 (740)
T ss_dssp ECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEE---ETTEEEEEEEESSTTEEEEEEEEEE
T ss_pred cCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEe---CCCeEEEEEeCCCCCEEEEEEEECC
Confidence 0 00 0 011121 266678899999 8999766543 33479999999
Q ss_pred CCcceecccccceeee--ccccccceE-----EEEeecCCCCcEE-Eee-CC--CeEEEeeC
Q 018858 298 RFQGVQTSINNDLLIK--NINLNKKVN-----WLCTTPTESENLV-VCD-TS--KVVKVYSI 348 (349)
Q Consensus 298 ~~~~~~~~~~~~~~~~--~~~~~~~v~-----~~~~~~~~~~~l~-~~~-~d--g~i~iw~~ 348 (349)
+++..... ..... ...|...+. ..+|+| ||+.|+ ..+ .+ ..|++|++
T Consensus 294 tg~~~~~~---~~~~~l~~~~~~~~v~~~~~~~p~fsp-DG~~l~~~~s~~~G~~~l~~~~~ 351 (740)
T 4a5s_A 294 ESSGRWNC---LVARQHIEMSTTGWVGRFRPSEPHFTL-DGNSFYKIISNEEGYRHICYFQI 351 (740)
T ss_dssp TTTTEEEE---CGGGCEEEECSSSCSSSSSCCCCEECT-TSSEEEEEEECTTSCEEEEEEET
T ss_pred CCccccce---eEEEEeeeccCCceEccCcCCCceEcC-CCCEEEEEEEcCCCceEEEEEEC
Confidence 87410000 00111 123443333 677877 887766 555 34 45777765
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-15 Score=121.66 Aligned_cols=188 Identities=12% Similarity=0.035 Sum_probs=139.7
Q ss_pred CceEEEeCCCCcEEEEECCCCcEEEEeecCC-CCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccce
Q 018858 28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGN-GPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEI 106 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v 106 (349)
+++|++++.++.|.+||.++++.+..+..+. ..+.+++++|+|+.++ +.++.|..||. +++....+... ....+
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~--~~~~~ 79 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAP--AGCEM 79 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECC--TTCEE
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCC--CCccc
Confidence 5899999999999999999999999998776 5788999999999888 45778999998 66544443321 12467
Q ss_pred EEEEEccCCCEEEEEcC-CCcEEEEEcCCceEeceeccc-----cccceeEEEEccCCCCCCCCCCCCCCccccCCceeE
Q 018858 107 NQIVCNPKSSFLACADD-GGDVKIIDIRQHCLYKSLRAG-----HSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVH 180 (349)
Q Consensus 107 ~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (349)
.++.+.++++.+++.+. ++.|..+|. +++.+..+... +......+++.+
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~------------------------ 134 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNK------------------------ 134 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECT------------------------
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECC------------------------
Confidence 88899999999998877 777888875 67766665411 111233344444
Q ss_pred EeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeee
Q 018858 181 AIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSV 260 (349)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (349)
+++++++...++.|..||.+ + +.+.++
T Consensus 135 ------------~G~~lv~~~~~~~v~~~d~~-G----------------------------------------~~~w~~ 161 (276)
T 3no2_A 135 ------------KGNYLVPLFATSEVREIAPN-G----------------------------------------QLLNSV 161 (276)
T ss_dssp ------------TSCEEEEETTTTEEEEECTT-S----------------------------------------CEEEEE
T ss_pred ------------CCCEEEEecCCCEEEEECCC-C----------------------------------------CEEEEE
Confidence 89999999999999999988 4 223333
Q ss_pred cCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcce
Q 018858 261 GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGV 302 (349)
Q Consensus 261 ~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 302 (349)
... ..+.++... ++|+++++++.++.|..+|..+++.+
T Consensus 162 ~~~-~~~~~~~~~---~~g~~~v~~~~~~~v~~~d~~tG~~~ 199 (276)
T 3no2_A 162 KLS-GTPFSSAFL---DNGDCLVACGDAHCFVQLNLESNRIV 199 (276)
T ss_dssp ECS-SCCCEEEEC---TTSCEEEECBTTSEEEEECTTTCCEE
T ss_pred ECC-CCccceeEc---CCCCEEEEeCCCCeEEEEeCcCCcEE
Confidence 322 234456666 89999999988889999999988543
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-16 Score=143.96 Aligned_cols=243 Identities=11% Similarity=-0.013 Sum_probs=158.2
Q ss_pred CCceeeeEEEEecCCCceEE-----EeCCCCcEEEEECCCCcEEEEeecCCCCe--EEEEEecCCCEEEEEeCCCe----
Q 018858 13 GHKATATCCIASRDRPGFVA-----SSGEDGCICWFDLRSKDVQLVTDVGNGPV--TSLCFKSGNEDIIYVSSGKE---- 81 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~-----t~~~dg~i~vwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~dg~---- 81 (349)
+|...+.+++|||+ +++|+ .|+.+..|++||+.+++.+. ..+...+ ..++|+|+|+.|+.++.+..
T Consensus 118 ~~~~~~~~~~~SPD-G~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~ 194 (695)
T 2bkl_A 118 DGTVSLGTWAVSWD-GKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIK 194 (695)
T ss_dssp SSCEEEEEEEECTT-SSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSC
T ss_pred CCCEEEEEEEECCC-CCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCc
Confidence 46668999999999 88888 55566789999999988641 1111122 67899999999999988765
Q ss_pred ---------EEEEEccCCCcc-cceeeccCcccceEEEEEccCCCEEEEEcCCC----cEEEEEcCCceEeceecccccc
Q 018858 82 ---------VKSFDVHMPASW-RPLESYNYNKEEINQIVCNPKSSFLACADDGG----DVKIIDIRQHCLYKSLRAGHSS 147 (349)
Q Consensus 82 ---------i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~ 147 (349)
|++|++.++... ..+.....+...+..+.|+|+|++|+.++.++ .|++++..+++. ..+. .+..
T Consensus 195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~-~~~~ 272 (695)
T 2bkl_A 195 VDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLV-KGVG 272 (695)
T ss_dssp GGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEE-ECSS
T ss_pred cccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEee-cCCC
Confidence 999999876432 23333333445788999999999998877665 677777655543 3333 3444
Q ss_pred ceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEc---CCCeEEEEEccCceeeeecCCCC
Q 018858 148 ICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK---GDGVVDVINIESELNISRSKSTT 224 (349)
Q Consensus 148 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~ 224 (349)
.+....+ + ++.+++... .++.|.+||+.++..
T Consensus 273 ~~~~~~~-~------------------------------------~g~l~~~s~~~~~~~~l~~~d~~~~~~-------- 307 (695)
T 2bkl_A 273 AKYEVHA-W------------------------------------KDRFYVLTDEGAPRQRVFEVDPAKPAR-------- 307 (695)
T ss_dssp CCEEEEE-E------------------------------------TTEEEEEECTTCTTCEEEEEBTTBCSG--------
T ss_pred ceEEEEe-c------------------------------------CCcEEEEECCCCCCCEEEEEeCCCCCc--------
Confidence 4455555 4 445444443 257899999875310
Q ss_pred CCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCC-CcceEEEEEeeecCCccEEEEeeCCCeEEEEecCC-Ccce
Q 018858 225 KPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGH-TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR-FQGV 302 (349)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~-~~~~ 302 (349)
. .....+..+ ...+..+.++ ++.++++...|+..++|.+.. +
T Consensus 308 ---------------------------~--~~~~l~~~~~~~~l~~~~~~----~~~lv~~~~~dg~~~l~~~~~~g--- 351 (695)
T 2bkl_A 308 ---------------------------A--SWKEIVPEDSSASLLSVSIV----GGHLSLEYLKDATSEVRVATLKG--- 351 (695)
T ss_dssp ---------------------------G--GCEEEECCCSSCEEEEEEEE----TTEEEEEEEETTEEEEEEEETTC---
T ss_pred ---------------------------c--CCeEEecCCCCCeEEEEEEE----CCEEEEEEEECCEEEEEEEeCCC---
Confidence 0 001112222 3457778876 677889999999888886652 2
Q ss_pred ecccccceeeecccc-ccceEEEEeecCCCCcEE-Ee---eCCCeEEEeeC
Q 018858 303 QTSINNDLLIKNINL-NKKVNWLCTTPTESENLV-VC---DTSKVVKVYSI 348 (349)
Q Consensus 303 ~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~-~~---~~dg~i~iw~~ 348 (349)
.....+..+ ...+..++++| +++.++ +. ...+.|++||+
T Consensus 352 ------~~~~~l~~~~~~~v~~~~~s~-d~~~l~~~~ss~~~P~~v~~~d~ 395 (695)
T 2bkl_A 352 ------KPVRTVQLPGVGAASNLMGLE-DLDDAYYVFTSFTTPRQIYKTSV 395 (695)
T ss_dssp ------CEEEECCCSSSSEECCCBSCT-TCSEEEEEEEETTEEEEEEEEET
T ss_pred ------CeeEEecCCCCeEEEEeecCC-CCCEEEEEEcCCCCCCEEEEEEC
Confidence 222233333 56677788877 665555 33 24578999986
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.9e-15 Score=122.58 Aligned_cols=239 Identities=13% Similarity=-0.043 Sum_probs=161.1
Q ss_pred eeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccce
Q 018858 17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPL 96 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 96 (349)
....+.+.. ++++++...++.|.+||..+++.+.++. .......++++++++..++...++.|.+||..+++....+
T Consensus 45 ~~~~i~~~~--~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i 121 (328)
T 3dsm_A 45 VAQSMVIRD--GIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYI 121 (328)
T ss_dssp CEEEEEEET--TEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEE
T ss_pred cceEEEEEC--CEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEE
Confidence 356676653 5666666778999999999999988886 4567889999998854444437899999999876533333
Q ss_pred eecc--CcccceEEEEEccCCCEEEEEc-CCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccc
Q 018858 97 ESYN--YNKEEINQIVCNPKSSFLACAD-DGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQC 173 (349)
Q Consensus 97 ~~~~--~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 173 (349)
..-. ........+++ .+++.+++.. .++.|.++|+.+++.+..+. . ......+.++|
T Consensus 122 ~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~-~-g~~p~~i~~~~----------------- 181 (328)
T 3dsm_A 122 ECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELT-I-GIQPTSLVMDK----------------- 181 (328)
T ss_dssp ECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEE-C-SSCBCCCEECT-----------------
T ss_pred EcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEE-c-CCCccceEEcC-----------------
Confidence 2211 00114556777 3444444443 47899999999998887776 2 33456778887
Q ss_pred cCCceeEEeecCcccccCCCCcEEEEEcCC----------CeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 174 YNPAFVHAIAIPDADMLDKTNKICVVAKGD----------GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
++++++++..+ +.|.++|..+.+
T Consensus 182 -------------------dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~---------------------------- 214 (328)
T 3dsm_A 182 -------------------YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFT---------------------------- 214 (328)
T ss_dssp -------------------TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE----------------------------
T ss_pred -------------------CCCEEEEECCCccCCccccCCceEEEEECCCCe----------------------------
Confidence 78877766554 789999998742
Q ss_pred eeeeecCceeeeeeeeecCC-CcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceE
Q 018858 244 EILDQSGGKRLHLDYSVGGH-TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVN 322 (349)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~h-~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 322 (349)
....+.-. ......++++ |++++|+++.. .|++||..+++... ............
T Consensus 215 ------------v~~~~~~~~g~~p~~la~~---~d~~~lyv~~~--~v~~~d~~t~~~~~-------~~~~~~~~~~p~ 270 (328)
T 3dsm_A 215 ------------VEKQFKFKLGDWPSEVQLN---GTRDTLYWINN--DIWRMPVEADRVPV-------RPFLEFRDTKYY 270 (328)
T ss_dssp ------------EEEEEECCTTCCCEEEEEC---TTSCEEEEESS--SEEEEETTCSSCCS-------SCSBCCCSSCEE
T ss_pred ------------EEEEEecCCCCCceeEEEe---cCCCEEEEEcc--EEEEEECCCCceee-------eeeecCCCCceE
Confidence 22222211 2357899999 88888887765 89999998863210 001111245688
Q ss_pred EEEeecCCCCcEEEe----eCCCeEEEeeCC
Q 018858 323 WLCTTPTESENLVVC----DTSKVVKVYSIS 349 (349)
Q Consensus 323 ~~~~~~~~~~~l~~~----~~dg~i~iw~~~ 349 (349)
.++++|.++++.++. ..++.|.+||..
T Consensus 271 gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 271 GLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp EEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred EEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 899988666655555 578999999863
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-13 Score=111.95 Aligned_cols=277 Identities=8% Similarity=-0.016 Sum_probs=180.9
Q ss_pred eeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEE-EeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 018858 11 LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQL-VTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM 89 (349)
Q Consensus 11 l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 89 (349)
+..+...+.++++.++ ++++++...++.|.+||.. ++... ....+...+..+++.+++...++...++.|..||..
T Consensus 10 ~~~~~~~~~~i~~d~~-g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~- 86 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDK-GKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK- 86 (299)
T ss_dssp CCSSSCCEEEEEECTT-SCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred CCCcCCCccceEECCC-CCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-
Confidence 4455678999999998 7777777667899999988 55432 222345678999999999877777768899999876
Q ss_pred CCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCC
Q 018858 90 PASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGN 169 (349)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 169 (349)
++ ...+. .......+..+++.+++.++++...++.|.+||. +++............+..+++.+
T Consensus 87 g~-~~~~~-~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~------------- 150 (299)
T 2z2n_A 87 GI-IKEYT-LPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGS------------- 150 (299)
T ss_dssp SC-EEEEE-CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-------------
T ss_pred Cc-EEEEe-CCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcC-------------
Confidence 22 22221 2223456889999999988888777889999998 55443222112345577888877
Q ss_pred CccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeee---e
Q 018858 170 AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI---L 246 (349)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 246 (349)
+++++++...++.|..||. +++............+..++++++|..+++... .
T Consensus 151 -----------------------~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i 206 (299)
T 2z2n_A 151 -----------------------DNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKI 206 (299)
T ss_dssp -----------------------TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEE
T ss_pred -----------------------CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceE
Confidence 7887777777889999998 544433212222345678899999987665311 1
Q ss_pred eecCceeeee-eeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceee-eccccccceEEE
Q 018858 247 DQSGGKRLHL-DYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLI-KNINLNKKVNWL 324 (349)
Q Consensus 247 ~~~~~~~~~~-~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~ 324 (349)
..... .... ......+...+.+++++ ++|+++++...++.|.+||.. + .... ....+...+.++
T Consensus 207 ~~~~~-~g~~~~~~~~~~~~~~~~i~~~---~~g~l~v~~~~~~~i~~~d~~-g---------~~~~~~~~~~~~~~~~i 272 (299)
T 2z2n_A 207 GRITT-SGEITEFKIPTPNARPHAITAG---AGIDLWFTEWGANKIGRLTSN-N---------IIEEYPIQIKSAEPHGI 272 (299)
T ss_dssp EEECT-TCCEEEEECSSTTCCEEEEEEC---STTCEEEEETTTTEEEEEETT-T---------EEEEEECSSSSCCEEEE
T ss_pred EEECC-CCcEEEEECCCCCCCceeEEEC---CCCCEEEeccCCceEEEECCC-C---------ceEEEeCCCCCCccceE
Confidence 11111 1111 11223345678899999 888877776678899999983 3 2211 122345678888
Q ss_pred EeecCCCCcEEEeeCCCeEEEee
Q 018858 325 CTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 325 ~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
++ + ++.+.++.. .+.+..++
T Consensus 273 ~~-~-~g~l~v~~~-~~~l~~~~ 292 (299)
T 2z2n_A 273 CF-D-GETIWFAME-CDKIGKLT 292 (299)
T ss_dssp EE-C-SSCEEEEET-TTEEEEEE
T ss_pred Ee-c-CCCEEEEec-CCcEEEEE
Confidence 88 5 776555444 45555555
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.74 E-value=8.8e-16 Score=126.96 Aligned_cols=243 Identities=9% Similarity=-0.005 Sum_probs=161.7
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccc
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRP 95 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 95 (349)
..|.++.|+++ +..++..+.++.++.| .++....+..+...+.+++|+++++.++++..++.|.+||.++++...
T Consensus 6 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~- 80 (333)
T 2dg1_A 6 QDLPTLFYSGK-SNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR- 80 (333)
T ss_dssp CCCCBCCSCGG-GGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE-
T ss_pred cccceeeecCC-ccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEE-
Confidence 45778889998 6777777888999999 355666777777788999999999977788889999999988654322
Q ss_pred eeeccCcccceEEEEEccCCCEEEEEcCC----CcEEEEEcCCceEeceec-cccccceeEEEEccCCCCCCCCCCCCCC
Q 018858 96 LESYNYNKEEINQIVCNPKSSFLACADDG----GDVKIIDIRQHCLYKSLR-AGHSSICSSVQFIPWKPWEGLPENNGNA 170 (349)
Q Consensus 96 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 170 (349)
+. ..+...+.+++++|+++++++...+ +.|.+||..+++....+. ......+.+++++|
T Consensus 81 ~~--~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~-------------- 144 (333)
T 2dg1_A 81 PF--VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS-------------- 144 (333)
T ss_dssp EE--ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT--------------
T ss_pred Ee--eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECC--------------
Confidence 11 1234679999999999888877666 689999988765432222 02344677888888
Q ss_pred ccccCCceeEEeecCcccccCCCCcEEEEEcC------CCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEee
Q 018858 171 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKG------DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME 244 (349)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (349)
+++++++... .+.|..+|..+++
T Consensus 145 ----------------------~g~l~v~~~~~~~~~~~~~l~~~~~~~~~----------------------------- 173 (333)
T 2dg1_A 145 ----------------------KGGFYFTDFRGYSTNPLGGVYYVSPDFRT----------------------------- 173 (333)
T ss_dssp ----------------------TSCEEEEECCCBTTBCCEEEEEECTTSCC-----------------------------
T ss_pred ----------------------CCCEEEEeccccccCCCceEEEEeCCCCE-----------------------------
Confidence 7777776543 2455555554321
Q ss_pred eeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEE-EEeeCCCeEEEEecCC-CcceecccccceeeeccccccceE
Q 018858 245 ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYL-ISGGNDKLVKVWDCSR-FQGVQTSINNDLLIKNINLNKKVN 322 (349)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l-~s~~~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~v~ 322 (349)
...+..+...+..++|+ |++++| ++.+.++.|++||+.. +....... ........++ ..+.
T Consensus 174 ------------~~~~~~~~~~~~~i~~~---~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~-~~~~~~~~~~-~~~~ 236 (333)
T 2dg1_A 174 ------------VTPIIQNISVANGIALS---TDEKVLWVTETTANRLHRIALEDDGVTIQPFG-ATIPYYFTGH-EGPD 236 (333)
T ss_dssp ------------EEEEEEEESSEEEEEEC---TTSSEEEEEEGGGTEEEEEEECTTSSSEEEEE-EEEEEECCSS-SEEE
T ss_pred ------------EEEeecCCCcccceEEC---CCCCEEEEEeCCCCeEEEEEecCCCcCccccc-ceEEEecCCC-CCCC
Confidence 00111122346889999 898855 4555678999999964 22111000 0011111222 4677
Q ss_pred EEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 323 WLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 323 ~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.+++.+ +++++++...++.|.+||.
T Consensus 237 ~i~~d~-~G~l~v~~~~~~~v~~~d~ 261 (333)
T 2dg1_A 237 SCCIDS-DDNLYVAMYGQGRVLVFNK 261 (333)
T ss_dssp EEEEBT-TCCEEEEEETTTEEEEECT
T ss_pred ceEECC-CCCEEEEEcCCCEEEEECC
Confidence 889977 7777776677889999985
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.74 E-value=9.3e-16 Score=129.56 Aligned_cols=213 Identities=7% Similarity=-0.015 Sum_probs=143.2
Q ss_pred EEECCCCcEEEEeecCCCCeEE-----EEEecCCCEEEEEeC-CC--eEEEEEccCCCcccceeeccCcccceEEEEEcc
Q 018858 42 WFDLRSKDVQLVTDVGNGPVTS-----LCFKSGNEDIIYVSS-GK--EVKSFDVHMPASWRPLESYNYNKEEINQIVCNP 113 (349)
Q Consensus 42 vwd~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 113 (349)
.+|..++..+..+..|...... .+|+|+|++|+.++. ++ .|.+||+.+++.. .....+...+..++|+|
T Consensus 14 ~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~---~lt~~~~~~~~~~~~sp 90 (388)
T 3pe7_A 14 YQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVAT---QLTEGRGDNTFGGFLSP 90 (388)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEE---ECCCSSCBCSSSCEECT
T ss_pred EecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceE---EeeeCCCCCccceEEcC
Confidence 3466677777777777666655 789999999999887 66 4888898876432 22233334444678999
Q ss_pred CCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEE--EccCCCCCCCCCCCCCCccccCCceeEEeecCcccccC
Q 018858 114 KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQ--FIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLD 191 (349)
Q Consensus 114 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (349)
+++.|+.++.++.|++||+.+++...... .+...+.... ++|
T Consensus 91 dg~~l~~~~~~~~l~~~d~~~g~~~~~~~-~~~~~~~~~~~~~~~----------------------------------- 134 (388)
T 3pe7_A 91 DDDALFYVKDGRNLMRVDLATLEENVVYQ-VPAEWVGYGTWVANS----------------------------------- 134 (388)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCEEEEEE-CCTTEEEEEEEEECT-----------------------------------
T ss_pred CCCEEEEEeCCCeEEEEECCCCcceeeee-chhhcccccceeECC-----------------------------------
Confidence 99999999998999999999887765555 4444443333 356
Q ss_pred CCCcEEEEE----------------------cCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeec
Q 018858 192 KTNKICVVA----------------------KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS 249 (349)
Q Consensus 192 ~~~~~l~~~----------------------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (349)
++..++.. ..+..|.+||+.+++
T Consensus 135 -dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~---------------------------------- 179 (388)
T 3pe7_A 135 -DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE---------------------------------- 179 (388)
T ss_dssp -TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC----------------------------------
T ss_pred -CCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc----------------------------------
Confidence 56665531 234678888877631
Q ss_pred CceeeeeeeeecCCCcceEEEEEeeecC-CccEEEEeeCC------CeEEEEecCCCcceecccccceeeeccccc--cc
Q 018858 250 GGKRLHLDYSVGGHTAAASCVAFSMFGE-RGKYLISGGND------KLVKVWDCSRFQGVQTSINNDLLIKNINLN--KK 320 (349)
Q Consensus 250 ~~~~~~~~~~~~~h~~~i~~i~~~~~~~-~~~~l~s~~~d------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~ 320 (349)
...+..+...+..+.|+ | +|+.|+..+.+ ..|+++|..... . ..+..+. ..
T Consensus 180 -------~~~l~~~~~~~~~~~~s---p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~---------~-~~l~~~~~~~~ 239 (388)
T 3pe7_A 180 -------STVILQENQWLGHPIYR---PYDDSTVAFCHEGPHDLVDARMWLINEDGTN---------M-RKVKTHAEGES 239 (388)
T ss_dssp -------EEEEEEESSCEEEEEEE---TTEEEEEEEEECSCTTTSSCSEEEEETTSCC---------C-EESCCCCTTEE
T ss_pred -------eEEeecCCccccccEEC---CCCCCEEEEEEecCCCCCcceEEEEeCCCCc---------e-EEeeeCCCCcc
Confidence 12233345668899999 9 99988877653 378888877642 2 2223333 35
Q ss_pred eEEEEeecCCCCcEEEeeC-C----CeEEEeeCC
Q 018858 321 VNWLCTTPTESENLVVCDT-S----KVVKVYSIS 349 (349)
Q Consensus 321 v~~~~~~~~~~~~l~~~~~-d----g~i~iw~~~ 349 (349)
+...+|+| ||+.|+..+. + ..|++||+.
T Consensus 240 ~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~ 272 (388)
T 3pe7_A 240 CTHEFWVP-DGSALVYVSYLKGSPDRFIYSADPE 272 (388)
T ss_dssp EEEEEECT-TSSCEEEEEEETTCCCEEEEEECTT
T ss_pred cccceECC-CCCEEEEEecCCCCCcceEEEEecC
Confidence 77888988 8887766543 2 239999863
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.74 E-value=2.1e-14 Score=117.64 Aligned_cols=250 Identities=10% Similarity=0.052 Sum_probs=162.0
Q ss_pred eeeeCCceeeeEEEEecCCCceEEE-------eCCCCcEEEEECCCCcEEEEee----cCCCCeEEEEEecC-CCEEEEE
Q 018858 9 RRLRGHKATATCCIASRDRPGFVAS-------SGEDGCICWFDLRSKDVQLVTD----VGNGPVTSLCFKSG-NEDIIYV 76 (349)
Q Consensus 9 ~~l~~h~~~i~~~~~~~~~~~~l~t-------~~~dg~i~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~-~~~l~~~ 76 (349)
..+...-....+++|+++ +.++++ +..++.|.+||..+++...... ++...+..++++++ ++.++ +
T Consensus 11 ~~~~~~~~~~~~~~~~~~-g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v-~ 88 (314)
T 1pjx_A 11 TKVTEDIPGAEGPVFDKN-GDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFV-A 88 (314)
T ss_dssp EEEECCCTTCEEEEECTT-SCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEE-E
T ss_pred hhhhccCCCccCceECCC-CCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEE-E
Confidence 344444455678999987 777777 5678899999988877543221 13467889999998 65444 4
Q ss_pred eCCCeEEEEEccCCCcccc-eeecc-CcccceEEEEEccCCCEEEEEcCC---------------CcEEEEEcCCceEec
Q 018858 77 SSGKEVKSFDVHMPASWRP-LESYN-YNKEEINQIVCNPKSSFLACADDG---------------GDVKIIDIRQHCLYK 139 (349)
Q Consensus 77 ~~dg~i~iwd~~~~~~~~~-~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d---------------g~i~i~d~~~~~~~~ 139 (349)
+..+.|.+||.+ ++.... ..... .....+..+++.++++++++...+ +.|..||.. ++...
T Consensus 89 ~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~ 166 (314)
T 1pjx_A 89 DMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ 166 (314)
T ss_dssp ETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE
T ss_pred ECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE
Confidence 445579999987 543221 11111 112457899999999887776654 567777765 44332
Q ss_pred eeccccccceeEEEEc----cCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEE-EEcCCCeEEEEEcc-C
Q 018858 140 SLRAGHSSICSSVQFI----PWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV-VAKGDGVVDVINIE-S 213 (349)
Q Consensus 140 ~~~~~~~~~v~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~i~d~~-~ 213 (349)
... .......++++ | +++.+. +...++.|.+||.. .
T Consensus 167 ~~~--~~~~~~~i~~~~~~d~------------------------------------dg~~l~v~~~~~~~i~~~~~~~~ 208 (314)
T 1pjx_A 167 VDT--AFQFPNGIAVRHMNDG------------------------------------RPYQLIVAETPTKKLWSYDIKGP 208 (314)
T ss_dssp EEE--EESSEEEEEEEECTTS------------------------------------CEEEEEEEETTTTEEEEEEEEET
T ss_pred ecc--CCCCcceEEEecccCC------------------------------------CCCEEEEEECCCCeEEEEECCCC
Confidence 222 33345677887 7 675554 44567899999976 2
Q ss_pred ceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCC-cceEEEEEeeecCCccEEEEeeCCCeEE
Q 018858 214 ELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHT-AAASCVAFSMFGERGKYLISGGNDKLVK 292 (349)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~i~~i~~~~~~~~~~~l~s~~~d~~i~ 292 (349)
+.. ........+..+. ..+..++++ ++|+++++...++.|.
T Consensus 209 g~~-----------------------------------~~~~~~~~~~~~~~~~p~~i~~d---~~G~l~v~~~~~~~i~ 250 (314)
T 1pjx_A 209 AKI-----------------------------------ENKKVWGHIPGTHEGGADGMDFD---EDNNLLVANWGSSHIE 250 (314)
T ss_dssp TEE-----------------------------------EEEEEEEECCCCSSCEEEEEEEB---TTCCEEEEEETTTEEE
T ss_pred Ccc-----------------------------------ccceEEEECCCCCCCCCCceEEC---CCCCEEEEEcCCCEEE
Confidence 210 0001222333443 567889999 8999888887889999
Q ss_pred EEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEe-eCCCeEEEeeC
Q 018858 293 VWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVC-DTSKVVKVYSI 348 (349)
Q Consensus 293 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~iw~~ 348 (349)
+||..++ ..+.....+...+.++++.+ +++.|+.+ ..++.|..|++
T Consensus 251 ~~d~~~g---------~~~~~~~~~~~~~~~i~~~~-dg~~l~v~~~~~~~l~~~~~ 297 (314)
T 1pjx_A 251 VFGPDGG---------QPKMRIRCPFEKPSNLHFKP-QTKTIFVTEHENNAVWKFEW 297 (314)
T ss_dssp EECTTCB---------SCSEEEECSSSCEEEEEECT-TSSEEEEEETTTTEEEEEEC
T ss_pred EEcCCCC---------cEeEEEeCCCCCceeEEECC-CCCEEEEEeCCCCeEEEEeC
Confidence 9998865 23333334556789999976 77755554 56688988885
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.3e-14 Score=123.89 Aligned_cols=273 Identities=14% Similarity=0.079 Sum_probs=173.3
Q ss_pred CceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcc--CCCcccceeeccCcccc
Q 018858 28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVH--MPASWRPLESYNYNKEE 105 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~ 105 (349)
+.++++...++.|.++|..+++.+..+... ..+..+.++|+|+++++++.++.|.+||+. +++.. ..+.. ...
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v---~~i~~-G~~ 241 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV---AEIKI-GSE 241 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE---EEEEC-CSE
T ss_pred ceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEe---EEEec-CCC
Confidence 456777888899999999999998888743 457799999999999999999999999995 54333 33322 234
Q ss_pred eEEEEEc----cCCCEEEEEcC-CCcEEEEEcCCceEeceecccc-----------ccceeEEEEccCCCCCCCCCCCCC
Q 018858 106 INQIVCN----PKSSFLACADD-GGDVKIIDIRQHCLYKSLRAGH-----------SSICSSVQFIPWKPWEGLPENNGN 169 (349)
Q Consensus 106 v~~~~~~----~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~~~~~~~~~~ 169 (349)
...++|+ |+|+++++++. ++.|.++|..+.+++..+. .. ...+..+..+++
T Consensus 242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~-~~~~~~~~~~~~p~~rva~i~~s~~------------ 308 (567)
T 1qks_A 242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQS-TRGMTYDEQEYHPEPRVAAILASHY------------ 308 (567)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEE-CCEECTTTCCEESCCCEEEEEECSS------------
T ss_pred CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEe-ccccccccccccCCCceEEEEEcCC------------
Confidence 6789999 69998877664 5889999999988887765 21 113455555552
Q ss_pred CccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeec
Q 018858 170 AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS 249 (349)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (349)
....++....+|.|.++|....................+.|+|+|++++++...+..
T Consensus 309 -----------------------~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~ 365 (567)
T 1qks_A 309 -----------------------RPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNK 365 (567)
T ss_dssp -----------------------SSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTE
T ss_pred -----------------------CCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCe
Confidence 234555556779999999876433222222233455678899999998764322111
Q ss_pred C----ceeeeeeeee-----cCCCcceEEEEEeeecCC-ccEEEEee-CCCeEEEEecCCCcceecccccceeeeccccc
Q 018858 250 G----GKRLHLDYSV-----GGHTAAASCVAFSMFGER-GKYLISGG-NDKLVKVWDCSRFQGVQTSINNDLLIKNINLN 318 (349)
Q Consensus 250 ~----~~~~~~~~~~-----~~h~~~i~~i~~~~~~~~-~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 318 (349)
+ ....+....+ ..|.+.-..+ ++ |+ +...+++. .++.|.++|........ ..-+.+.......
T Consensus 366 V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~---p~~g~v~~t~~~g~~~Vsvid~~~~~~~~--~~~kvv~~i~~~g 439 (567)
T 1qks_A 366 LVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VH---PTFGPVWATSHMGDDSVALIGTDPEGHPD--NAWKILDSFPALG 439 (567)
T ss_dssp EEEEETTTTEEEEEEECSSSSBCCTTCEEE-EE---TTTEEEEEEEBSSSSEEEEEECCTTTCTT--TBTSEEEEEECSC
T ss_pred EEEEECCCCcEEEEEeccCcCCCCccceee-EC---CCCCcEEEeCCCCCCeEEEecCCCCCCcc--ccCEEEEEEecCC
Confidence 1 1111222111 1243222122 45 76 44445553 46899999998732100 0003334433333
Q ss_pred cceEEEEeecCCCCcEEEeeC-------CCeEEEeeC
Q 018858 319 KKVNWLCTTPTESENLVVCDT-------SKVVKVYSI 348 (349)
Q Consensus 319 ~~v~~~~~~~~~~~~l~~~~~-------dg~i~iw~~ 348 (349)
..-..+..+| ++++|.+... ...|.++|+
T Consensus 440 ~g~~~i~~~p-~~~~l~v~~~~~~~~~~~~~v~v~d~ 475 (567)
T 1qks_A 440 GGSLFIKTHP-NSQYLYVDATLNPEAEISGSVAVFDI 475 (567)
T ss_dssp SCCCCEECCT-TCSEEEEECTTCSSHHHHTCEEEEEG
T ss_pred CCCEEEEeCC-CCCeEEEecCCCCCcccCceEEEEEC
Confidence 3334466777 7878887652 358999886
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-14 Score=116.50 Aligned_cols=200 Identities=11% Similarity=0.117 Sum_probs=141.6
Q ss_pred CceeeeEEEEecCCCceEEEeCC-CCcEEEEECCCCcEEEEeec-CCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 018858 14 HKATATCCIASRDRPGFVASSGE-DGCICWFDLRSKDVQLVTDV-GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA 91 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~-dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 91 (349)
|...+.++++.+.++.++++... ++.|.+|| .+++.+..+.. +...+..++++|+++.+++...++.|.+||.. ++
T Consensus 75 ~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~ 152 (286)
T 1q7f_A 75 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GN 152 (286)
T ss_dssp CBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred cccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CC
Confidence 44567889995433666666643 78999999 56776666643 34578999999999977777778999999965 32
Q ss_pred cccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceecccc--ccceeEEEEccCCCCCCCCCCCCC
Q 018858 92 SWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGH--SSICSSVQFIPWKPWEGLPENNGN 169 (349)
Q Consensus 92 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~ 169 (349)
....+.. ..+...+..++++++++++++...++.|++||.. ++.+..+. .. ...+..++++|
T Consensus 153 ~~~~~~~-~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~-~~g~~~~p~~i~~d~------------- 216 (286)
T 1q7f_A 153 VLHKFGC-SKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIG-GEGITNYPIGVGINS------------- 216 (286)
T ss_dssp EEEEEEC-TTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEES-CTTTSCSEEEEEECT-------------
T ss_pred EEEEeCC-CCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEc-cCCccCCCcEEEECC-------------
Confidence 2222211 1233568899999999988888888999999974 45555554 22 24677888888
Q ss_pred CccccCCceeEEeecCcccccCCCCcEEEEEcCCC-eEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeee
Q 018858 170 AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG-VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ 248 (349)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (349)
+++++++...++ .|.+||....
T Consensus 217 -----------------------~G~l~v~~~~~~~~i~~~~~~g~---------------------------------- 239 (286)
T 1q7f_A 217 -----------------------NGEILIADNHNNFNLTIFTQDGQ---------------------------------- 239 (286)
T ss_dssp -----------------------TCCEEEEECSSSCEEEEECTTSC----------------------------------
T ss_pred -----------------------CCCEEEEeCCCCEEEEEECCCCC----------------------------------
Confidence 788888887775 9999996541
Q ss_pred cCceeeeeeeeecCC--CcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCC
Q 018858 249 SGGKRLHLDYSVGGH--TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 249 ~~~~~~~~~~~~~~h--~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 299 (349)
.+..+..+ ...+.+++++ |+|+++++ +.|+.|++|++...
T Consensus 240 -------~~~~~~~~~~~~~~~~i~~~---~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 240 -------LISALESKVKHAQCFDVALM---DDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp -------EEEEEEESSCCSCEEEEEEE---TTTEEEEE-ETTTEEEEEECSCC
T ss_pred -------EEEEEcccCCCCcceeEEEC---CCCcEEEE-CCCCeEEEEEcccc
Confidence 11222222 2347789999 89987777 57999999998664
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.70 E-value=8.1e-16 Score=130.22 Aligned_cols=269 Identities=5% Similarity=-0.063 Sum_probs=155.9
Q ss_pred EEECCCCcEEEEeecCCCC-----eEEEEEecCCCEEEEEeCC---CeEEEEEccCCCcccceeeccCcccceEEEEEcc
Q 018858 42 WFDLRSKDVQLVTDVGNGP-----VTSLCFKSGNEDIIYVSSG---KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNP 113 (349)
Q Consensus 42 vwd~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 113 (349)
..|..+++.+..+..+... +..++|+|+|++|+..... ..|.+||+.+++.. .+ ..........+.|+|
T Consensus 14 ~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~-~l--~~~~~~~~~~~~~sp 90 (396)
T 3c5m_A 14 FVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAV-QL--TEGKGDNTFGGFIST 90 (396)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEE-EC--CCSSCBCTTTCEECT
T ss_pred eecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEE-Ee--ecCCCCccccceECC
Confidence 3466777766666554333 6678999999998877543 37888898865422 11 111112223378999
Q ss_pred CCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCC
Q 018858 114 KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT 193 (349)
Q Consensus 114 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (349)
++++|+.++.++.|++||+.+++...... .+.. |.|++.++........ ........+++| +
T Consensus 91 dg~~l~~~~~~~~l~~~d~~~~~~~~~~~-~~~~------~~~~g~~l~~~~~~~~-----~~~~~~~~~~sp------d 152 (396)
T 3c5m_A 91 DERAFFYVKNELNLMKVDLETLEEQVIYT-VDEE------WKGYGTWVANSDCTKL-----VGIEILKRDWQP------L 152 (396)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCEEEEEE-CCTT------EEEEEEEEECTTSSEE-----EEEEEEGGGCCC------C
T ss_pred CCCEEEEEEcCCcEEEEECCCCCcEEEEe-cccc------cCCCCCEEEeccCCcc-----ccccccccccCC------C
Confidence 99999999988899999998877654443 2322 2222111100000000 000001123333 6
Q ss_pred CcEEEEE-----cCCCeEEEEEccCceeeeecCCCCCCccceeeeec-cccEEEEeeeeee-----cCce---eeeeeee
Q 018858 194 NKICVVA-----KGDGVVDVINIESELNISRSKSTTKPLKGSQSTSK-VNIRDAEMEILDQ-----SGGK---RLHLDYS 259 (349)
Q Consensus 194 ~~~l~~~-----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~---~~~~~~~ 259 (349)
++.++.. ..+..|.+||+.+++..... .....+..+.|+| +++.+++...... .+.. .......
T Consensus 153 g~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~ 230 (396)
T 3c5m_A 153 TSWEKFAEFYHTNPTCRLIKVDIETGELEVIH--QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK 230 (396)
T ss_dssp CSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE--EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE
T ss_pred CcceeeeeeccCCCcceEEEEECCCCcEEeec--cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE
Confidence 6665544 35678999999876654433 2335567889999 8887776432110 0100 0011122
Q ss_pred ecCC--CcceEEEEEeeecCCccEEEEeeCC-----CeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCC
Q 018858 260 VGGH--TAAASCVAFSMFGERGKYLISGGND-----KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESE 332 (349)
Q Consensus 260 ~~~h--~~~i~~i~~~~~~~~~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 332 (349)
+..+ ...+..+.|+ |+|++|+.++.+ +.|++||+.+++. ..+....+ .. +.|+|.+++
T Consensus 231 l~~~~~~~~~~~~~~s---pdg~~l~~~~~~~~~~~~~l~~~d~~~g~~-------~~l~~~~~----~~-~~~s~~dg~ 295 (396)
T 3c5m_A 231 IKEHAEGESCTHEFWI---PDGSAMAYVSYFKGQTDRVIYKANPETLEN-------EEVMVMPP----CS-HLMSNFDGS 295 (396)
T ss_dssp SSCCCTTEEEEEEEEC---TTSSCEEEEEEETTTCCEEEEEECTTTCCE-------EEEEECCS----EE-EEEECSSSS
T ss_pred eeccCCCccccceEEC---CCCCEEEEEecCCCCccceEEEEECCCCCe-------EEeeeCCC----CC-CCccCCCCc
Confidence 2222 2357788999 899988777544 4599999988632 11111111 22 678765777
Q ss_pred cEEEee----------------CCCeEEEeeC
Q 018858 333 NLVVCD----------------TSKVVKVYSI 348 (349)
Q Consensus 333 ~l~~~~----------------~dg~i~iw~~ 348 (349)
++++++ .++.|++||+
T Consensus 296 ~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~ 327 (396)
T 3c5m_A 296 LMVGDGCDAPVDVADADSYNIENDPFLYVLNT 327 (396)
T ss_dssp EEEEEECCC----------CCCCCCEEEEEET
T ss_pred eEEEecCCcceeeccccccccCCCCcEEEEec
Confidence 777654 3478999986
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.69 E-value=9.5e-14 Score=117.54 Aligned_cols=254 Identities=10% Similarity=0.025 Sum_probs=162.4
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCC--eEEEEEccCCCcc
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGK--EVKSFDVHMPASW 93 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~ 93 (349)
.....++|+++ ++++++...++.|++||..+++........ .... ++|+++++.|+++..++ .|.+++...+...
T Consensus 131 ~~P~~la~d~~-g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGN-NTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCEEEEEECST-TEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred CCceEEEEeCC-CCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee
Confidence 35778999998 788888777899999999887765554443 3334 99999999999888765 7888888754332
Q ss_pred cceeeccC-cccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEece----eccccccce-e-EEEEccCCCCCCCCCC
Q 018858 94 RPLESYNY-NKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKS----LRAGHSSIC-S-SVQFIPWKPWEGLPEN 166 (349)
Q Consensus 94 ~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~~v-~-~~~~~~~~~~~~~~~~ 166 (349)
..+..... ....+.+++++|++..|+++..++.|+.||..++..... .. +....- . .++|+|+
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~-g~~~~~P~~~ia~~p~--------- 277 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELS-GSLGTNPGPYLIYYFV--------- 277 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCC-SCCCCSSCCEEEEETT---------
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccccc-CCCCCCccccEEEeCC---------
Confidence 22211111 335678899999655566577788999999986653221 11 111111 2 7888873
Q ss_pred CCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeee
Q 018858 167 NGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEIL 246 (349)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (349)
++.++++-..++.|+.|+.........-.... .+
T Consensus 278 --------------------------~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~------------------~g-- 311 (409)
T 3hrp_A 278 --------------------------DSNFYMSDQNLSSVYKITPDGECEWFCGSATQ------------------KT-- 311 (409)
T ss_dssp --------------------------TTEEEEEETTTTEEEEECTTCCEEEEEECTTC------------------CS--
T ss_pred --------------------------CCEEEEEeCCCCEEEEEecCCCEEEEEeCCCC------------------CC--
Confidence 35666666778899999876421100000000 00
Q ss_pred eecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEee-CCCeEEEEecCCCcceecccccceeeecccc--------
Q 018858 247 DQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG-NDKLVKVWDCSRFQGVQTSINNDLLIKNINL-------- 317 (349)
Q Consensus 247 ~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~-------- 317 (349)
.... ......-.....++++ ++|+++++-. .++.|+.|++.++.. ..+.++
T Consensus 312 ----~~dg---~~~~~~~~~P~gia~d---~dG~lyvad~~~~~~I~~~~~~~G~v----------~~~~g~~~~~g~~~ 371 (409)
T 3hrp_A 312 ----VQDG---LREEALFAQPNGMTVD---EDGNFYIVDGFKGYCLRKLDILDGYV----------STVAGQVDVASQID 371 (409)
T ss_dssp ----CBCE---EGGGCBCSSEEEEEEC---TTCCEEEEETTTTCEEEEEETTTTEE----------EEEEECTTCBSCCC
T ss_pred ----cCCC---cccccEeCCCeEEEEe---CCCCEEEEeCCCCCEEEEEECCCCEE----------EEEeCCCCCCCcCC
Confidence 0000 0000112346899999 8999888877 889999999877532 111111
Q ss_pred -------ccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 318 -------NKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 318 -------~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
-.....+++.+ ++.++++-..++.|+.++++
T Consensus 372 g~~~~~~~~~P~giavd~-~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 372 GTPLEATFNYPYDICYDG-EGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp BSTTTCCBSSEEEEEECS-SSEEEEEESTTCEEEEEEEC
T ss_pred CChhceEeCCceEEEEcC-CCCEEEEECCCCeEEEEEeC
Confidence 24578999988 57666666788899888764
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-14 Score=132.87 Aligned_cols=242 Identities=10% Similarity=0.017 Sum_probs=153.0
Q ss_pred CceeeeEEEEecCCCceEEEeCCC-----CcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCe-------
Q 018858 14 HKATATCCIASRDRPGFVASSGED-----GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKE------- 81 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~d-----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~------- 81 (349)
|...+..++|||+ +++|+.+..+ ..|++||+.+++.+.... +...+..++|+|+ +.|+.++.++.
T Consensus 161 ~~~~~~~~~~SPD-G~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~ 237 (741)
T 1yr2_A 161 GATALDAWAASDD-GRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQ 237 (741)
T ss_dssp --EEEEEEEECTT-SSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EEEESCCCEESTT-SEEEEEECCCC-------
T ss_pred CCEEEEeEEECCC-CCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CCceeccEEEECC-CEEEEEEecCcccccccc
Confidence 4457889999999 7877765433 469999999998754311 2222356889999 99998886543
Q ss_pred -------EEEEEccCCCcc-cceeeccCcccceEEEEEccCCCEEEEEcCCC-----cEEEEEcCCc--eEeceeccccc
Q 018858 82 -------VKSFDVHMPASW-RPLESYNYNKEEINQIVCNPKSSFLACADDGG-----DVKIIDIRQH--CLYKSLRAGHS 146 (349)
Q Consensus 82 -------i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~--~~~~~~~~~~~ 146 (349)
|++|++.++... ..+.....+...+..+.|+|+|++|+..+.++ .|++||+.++ +....+. .+.
T Consensus 238 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~-~~~ 316 (741)
T 1yr2_A 238 ALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALI-PDL 316 (741)
T ss_dssp -CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEE-CSS
T ss_pred cCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEec-CCC
Confidence 889998765421 12222222333578999999999988776543 7999999876 3134444 333
Q ss_pred cceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcC----CCeEEEEEccCceeeeecCC
Q 018858 147 SICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG----DGVVDVINIESELNISRSKS 222 (349)
Q Consensus 147 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~ 222 (349)
....... .| +++.|+..+. ++.|.+||+.+..
T Consensus 317 ~~~~~~~-~~------------------------------------dg~~l~~~s~~~~~~~~l~~~d~~~~~------- 352 (741)
T 1yr2_A 317 KAQWDFV-DG------------------------------------VGDQLWFVSGDGAPLKKIVRVDLSGST------- 352 (741)
T ss_dssp SSCEEEE-EE------------------------------------ETTEEEEEECTTCTTCEEEEEECSSSS-------
T ss_pred CceEEEE-ec------------------------------------cCCEEEEEECCCCCCCEEEEEeCCCCc-------
Confidence 3333332 36 6777766654 3568899987520
Q ss_pred CCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecC-CCcc
Q 018858 223 TTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS-RFQG 301 (349)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~-~~~~ 301 (349)
. .....+..+...+..+.++ ++.++++...|+..+||.+. .+
T Consensus 353 -----------------------------~--~~~~l~~~~~~~l~~~~~~----~~~lv~~~~~dg~~~l~~~~~~g-- 395 (741)
T 1yr2_A 353 -----------------------------P--RFDTVVPESKDNLESVGIA----GNRLFASYIHDAKSQVLAFDLDG-- 395 (741)
T ss_dssp -----------------------------C--EEEEEECCCSSEEEEEEEE----BTEEEEEEEETTEEEEEEEETTS--
T ss_pred -----------------------------c--ccEEEecCCCCeEEEEEEE----CCEEEEEEEECCEEEEEEEeCCC--
Confidence 0 1112223344456667775 56788888889887777654 22
Q ss_pred eecccccceeeecc-ccccceEEEEeecCCCCcEE-Eee---CCCeEEEeeC
Q 018858 302 VQTSINNDLLIKNI-NLNKKVNWLCTTPTESENLV-VCD---TSKVVKVYSI 348 (349)
Q Consensus 302 ~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~-~~~---~dg~i~iw~~ 348 (349)
.....+. .....+..+.++| +++.|+ +.+ ..+.|++||+
T Consensus 396 -------~~~~~l~~~~~~~v~~~~~s~-d~~~l~~~~ss~~~P~~i~~~d~ 439 (741)
T 1yr2_A 396 -------KPAGAVSLPGIGSASGLSGRP-GDRHAYLSFSSFTQPATVLALDP 439 (741)
T ss_dssp -------CEEEECBCSSSCEEEEEECCB-TCSCEEEEEEETTEEEEEEEEET
T ss_pred -------CceeeccCCCCeEEEEeecCC-CCCEEEEEEcCCCCCCEEEEEEC
Confidence 2222332 2456788888988 555555 332 4588999986
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.9e-13 Score=118.70 Aligned_cols=300 Identities=10% Similarity=0.012 Sum_probs=188.2
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECC--CCcEEEEeecCCCCeEEEEEe----cCCCEEEEEe
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLR--SKDVQLVTDVGNGPVTSLCFK----SGNEDIIYVS 77 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~--~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~ 77 (349)
+++.+.++... ..+..+.|+|+ ++++++++.|+.|.+||+. +++.+..+... .....++|+ |+|+++++++
T Consensus 186 t~~v~~~i~~g-~~p~~v~~SpD-Gr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~n 262 (567)
T 1qks_A 186 TYEIKTVLDTG-YAVHISRLSAS-GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEARSIETSKMEGWEDKYAIAGA 262 (567)
T ss_dssp TCCEEEEEECS-SCEEEEEECTT-SCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEEEEEECCSTTCTTTEEEEEE
T ss_pred CCeEEEEEeCC-CCccceEECCC-CCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCceeEEccccCCCCCEEEEEE
Confidence 45566666643 34568999998 8999999999999999995 78888887753 346789999 6999998887
Q ss_pred C-CCeEEEEEccCCCcccceeeccC-------c-ccceEEEEEccCCC-EEEEEcCCCcEEEEEcCCceEe--ceecccc
Q 018858 78 S-GKEVKSFDVHMPASWRPLESYNY-------N-KEEINQIVCNPKSS-FLACADDGGDVKIIDIRQHCLY--KSLRAGH 145 (349)
Q Consensus 78 ~-dg~i~iwd~~~~~~~~~~~~~~~-------~-~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~ 145 (349)
. ++.|.++|..+.+..+.+..... | ...+..+..++++. +++....+|.|.++|....+.+ ..+. .
T Consensus 263 ~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~--~ 340 (567)
T 1qks_A 263 YWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS--A 340 (567)
T ss_dssp EETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE--C
T ss_pred ccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee--c
Confidence 5 48999999887655544432110 1 12567788888764 4555667799999998765432 2222 3
Q ss_pred ccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEc-CCCeEEEEEccCceeeeecCC-C
Q 018858 146 SSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESELNISRSKS-T 223 (349)
Q Consensus 146 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~-~ 223 (349)
......+.|+| ++++|+++. .++.|.++|+.+++....... .
T Consensus 341 ~~~~~d~~~~p------------------------------------dgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg 384 (567)
T 1qks_A 341 ERFLHDGGLDG------------------------------------SHRYFITAANARNKLVVIDTKEGKLVAIEDTGG 384 (567)
T ss_dssp CSSEEEEEECT------------------------------------TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred cccccCceECC------------------------------------CCCEEEEEeCCCCeEEEEECCCCcEEEEEeccC
Confidence 34456778888 788876655 678999999999876655433 1
Q ss_pred C-CCccceee-eeccccEE-EEe--eeeeecCc--ee-------eeeeeeecCCCcceEEEEEeeecCCccEEEEeeC--
Q 018858 224 T-KPLKGSQS-TSKVNIRD-AEM--EILDQSGG--KR-------LHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN-- 287 (349)
Q Consensus 224 ~-~~~~~~~~-~~~~~~~~-~~~--~~~~~~~~--~~-------~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~-- 287 (349)
. ..+-+... ++|++..+ ++. +....... .. ++.+.++......-..+..+ |+++++.+...
T Consensus 385 ~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~---p~~~~l~v~~~~~ 461 (567)
T 1qks_A 385 QTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTH---PNSQYLYVDATLN 461 (567)
T ss_dssp SSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECC---TTCSEEEEECTTC
T ss_pred cCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeC---CCCCeEEEecCCC
Confidence 1 11112333 57774444 332 11111111 11 34445554432222346667 89999888662
Q ss_pred -----CCeEEEEecCCCcceecccccceeee-----ccccccceEEEEeecCCCCcEEEee-----CCCeEEEeeC
Q 018858 288 -----DKLVKVWDCSRFQGVQTSINNDLLIK-----NINLNKKVNWLCTTPTESENLVVCD-----TSKVVKVYSI 348 (349)
Q Consensus 288 -----d~~i~vwd~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~l~~~~-----~dg~i~iw~~ 348 (349)
...|.|+|+.+.+.......-..+.. +..-...+..+.|++ +|+.+..+. .++.|.|+|.
T Consensus 462 ~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~~~~s~~~~~~~~~~i~v~D~ 536 (567)
T 1qks_A 462 PEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNK-DGTEVWFSVWNGKDQESALVVVDD 536 (567)
T ss_dssp SSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECT-TSSEEEEEEECCTTSCCEEEEEET
T ss_pred CCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECC-CCCEEEEEeecCCCCCCcEEEEEC
Confidence 35899999987611000000011100 011234788899988 777666552 3789999884
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.3e-12 Score=104.56 Aligned_cols=275 Identities=7% Similarity=-0.026 Sum_probs=177.9
Q ss_pred CceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEE-EeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCc
Q 018858 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQL-VTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPAS 92 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 92 (349)
....+.++++.++ +++.++...++.|.+||.. ++... .+......+..+++.++++..++...++.|..+|.. ++.
T Consensus 18 ~~~~p~~i~~d~~-g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~ 94 (300)
T 2qc5_A 18 PDSGPYGITSSED-GKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF 94 (300)
T ss_dssp TTCCEEEEEECTT-SCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred CCCCcceeeECCC-CCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence 4567889999998 7877777778999999988 55433 223334678999999999877776667889999877 432
Q ss_pred ccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEece-eccccccceeEEEEccCCCCCCCCCCCCCCc
Q 018858 93 WRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKS-LRAGHSSICSSVQFIPWKPWEGLPENNGNAG 171 (349)
Q Consensus 93 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 171 (349)
..+ ........+..+++.++++++++...++.|..+|.. ++.... +. .....+.++++.+
T Consensus 95 -~~~-~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~-~~~~~~~~i~~d~--------------- 155 (300)
T 2qc5_A 95 -TEY-PLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLP-NKGSYPAFITLGS--------------- 155 (300)
T ss_dssp -EEE-ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECS-STTCCEEEEEECT---------------
T ss_pred -EEe-cCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCC-CCCCCceeEEECC---------------
Confidence 222 222223568899999999888887778889999987 544322 22 2345677788877
Q ss_pred cccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeee---eee
Q 018858 172 QCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI---LDQ 248 (349)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 248 (349)
+++++++...++.|..||.. ++...............++++++|...++... ...
T Consensus 156 ---------------------~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~ 213 (300)
T 2qc5_A 156 ---------------------DNALWFTENQNNSIGRITNT-GKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGR 213 (300)
T ss_dssp ---------------------TSSEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred ---------------------CCCEEEEecCCCeEEEECCC-CcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEE
Confidence 67877766667899999984 43333222222345678899999887765311 111
Q ss_pred cCceeeee-eeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEee
Q 018858 249 SGGKRLHL-DYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTT 327 (349)
Q Consensus 249 ~~~~~~~~-~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 327 (349)
... .... ...+..+...+.+++++ ++|++.++...++.|..||.. +. ............+.++++.
T Consensus 214 ~~~-~g~~~~~~~~~~~~~~~~i~~d---~~g~l~v~~~~~~~i~~~~~~-g~--------~~~~~~~~~~~~~~~i~~~ 280 (300)
T 2qc5_A 214 ITT-TGEISEYDIPTPNARPHAITAG---KNSEIWFTEWGANQIGRITND-NT--------IQEYQLQTENAEPHGITFG 280 (300)
T ss_dssp ECT-TCCEEEEECSSTTCCEEEEEEC---STTCEEEEETTTTEEEEECTT-SC--------EEEEECCSTTCCCCCEEEC
T ss_pred EcC-CCcEEEEECCCCCCCceEEEEC---CCCCEEEeccCCCeEEEECCC-Cc--------EEEEECCccCCccceeEeC
Confidence 111 1111 11223344568899999 888877777677899999984 31 1111122234567888887
Q ss_pred cCCCCcEEEeeCCCeEEEeeC
Q 018858 328 PTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 328 ~~~~~~l~~~~~dg~i~iw~~ 348 (349)
+ ++++.+ ++.. .|..++.
T Consensus 281 ~-~g~l~v-~~~~-~i~~~~p 298 (300)
T 2qc5_A 281 K-DGSVWF-ALKC-KIGKLNL 298 (300)
T ss_dssp T-TSCEEE-ECSS-EEEEEEE
T ss_pred C-CCCEEE-EccC-ceEEeCC
Confidence 7 676444 4444 6666653
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.68 E-value=5e-13 Score=108.44 Aligned_cols=238 Identities=13% Similarity=0.106 Sum_probs=154.3
Q ss_pred eeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 018858 11 LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP 90 (349)
Q Consensus 11 l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 90 (349)
+..+..--.+..|+|+++.++++...++.|..||..+++. ..+. ....+.++++++++++++ +. ++.|.+||.+++
T Consensus 8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v-~~-~~~l~~~d~~~g 83 (297)
T 3g4e_A 8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVA-TI-GTKFCALNWKEQ 83 (297)
T ss_dssp ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEE-EE-TTEEEEEETTTT
T ss_pred eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEE-EE-CCeEEEEECCCC
Confidence 3344445668899997577788888889999999988765 3333 456799999999999544 44 567999998865
Q ss_pred Ccccceeecc--CcccceEEEEEccCCCEEEEEcCC---------CcEEEEEcC-CceEeceeccccccceeEEEEccCC
Q 018858 91 ASWRPLESYN--YNKEEINQIVCNPKSSFLACADDG---------GDVKIIDIR-QHCLYKSLRAGHSSICSSVQFIPWK 158 (349)
Q Consensus 91 ~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~i~d~~-~~~~~~~~~~~~~~~v~~~~~~~~~ 158 (349)
+. ..+.... .....+..+++.|+|+++++.... ..-.+|.+. .++... +. ........++|+|
T Consensus 84 ~~-~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~-~~~~~pngi~~sp-- 158 (297)
T 3g4e_A 84 SA-VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YF-DQVDISNGLDWSL-- 158 (297)
T ss_dssp EE-EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EE-EEESBEEEEEECT--
T ss_pred cE-EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE-Ee-eccccccceEEcC--
Confidence 42 2222211 112457889999999866654221 223444443 233322 22 2333456788888
Q ss_pred CCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEE-EEEcCCCeEEEEEcc--CceeeeecCCCCCCccceeeeec
Q 018858 159 PWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC-VVAKGDGVVDVINIE--SELNISRSKSTTKPLKGSQSTSK 235 (349)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~ 235 (349)
+++.| ++.+.++.|..|++. ++..
T Consensus 159 ----------------------------------dg~~lyv~~~~~~~i~~~~~d~~~G~~------------------- 185 (297)
T 3g4e_A 159 ----------------------------------DHKIFYYIDSLSYSVDAFDYDLQTGQI------------------- 185 (297)
T ss_dssp ----------------------------------TSCEEEEEEGGGTEEEEEEECTTTCCE-------------------
T ss_pred ----------------------------------CCCEEEEecCCCCcEEEEeccCCCCcc-------------------
Confidence 67655 555678899999974 3210
Q ss_pred cccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecc
Q 018858 236 VNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI 315 (349)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 315 (349)
...+....+..+...+..++++ ++|++.++...++.|.+||..++ +++..+.
T Consensus 186 ----------------~~~~~~~~~~~~~~~p~g~~~d---~~G~lwva~~~~~~v~~~d~~tG---------~~~~~i~ 237 (297)
T 3g4e_A 186 ----------------SNRRSVYKLEKEEQIPDGMCID---AEGKLWVACYNGGRVIRLDPVTG---------KRLQTVK 237 (297)
T ss_dssp ----------------EEEEEEEECCGGGCEEEEEEEB---TTSCEEEEEETTTEEEEECTTTC---------CEEEEEE
T ss_pred ----------------cCcEEEEECCCCCCCCCeeEEC---CCCCEEEEEcCCCEEEEEcCCCc---------eEEEEEE
Confidence 0012222333344567889999 89988888877889999999876 4555555
Q ss_pred ccccceEEEEeecCCCCcEEEee
Q 018858 316 NLNKKVNWLCTTPTESENLVVCD 338 (349)
Q Consensus 316 ~~~~~v~~~~~~~~~~~~l~~~~ 338 (349)
.+...+++++|..++++.|++++
T Consensus 238 ~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 238 LPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp CSSSBEEEEEEESGGGCEEEEEE
T ss_pred CCCCCceEEEEeCCCCCEEEEEc
Confidence 55678999999833666555554
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=9.2e-14 Score=114.54 Aligned_cols=211 Identities=10% Similarity=0.024 Sum_probs=148.3
Q ss_pred CceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc-EEEEe---------ecCCCCeEEEEEec-CCCEEEEEe-CCCe
Q 018858 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD-VQLVT---------DVGNGPVTSLCFKS-GNEDIIYVS-SGKE 81 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~-~~~~~---------~~~~~~v~~~~~~~-~~~~l~~~~-~dg~ 81 (349)
+-.....++++|+ ++++++...++.|++||..... .+..+ ..+......++++| ++..+++.+ .++.
T Consensus 89 ~~~~p~gia~d~~-g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~ 167 (329)
T 3fvz_A 89 LFYLPHGLSIDTD-GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR 167 (329)
T ss_dssp TCSSEEEEEECTT-SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE
T ss_pred ccCCceEEEECCC-CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe
Confidence 3456788999998 7888888889999999986542 34444 23445688999999 788777776 6899
Q ss_pred EEEEEccCCCcccceeec-------cCcccceEEEEEccC-CCEEEEEcCCCcEEEEEcCCceEeceecc-ccccceeEE
Q 018858 82 VKSFDVHMPASWRPLESY-------NYNKEEINQIVCNPK-SSFLACADDGGDVKIIDIRQHCLYKSLRA-GHSSICSSV 152 (349)
Q Consensus 82 i~iwd~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~ 152 (349)
|++|+. +++....+... ..+......++++|+ +.++++...++.|++||..+++.+..+.. .+...+..+
T Consensus 168 I~~~~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~ 246 (329)
T 3fvz_A 168 IVQFSP-SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAI 246 (329)
T ss_dssp EEEECT-TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEE
T ss_pred EEEEcC-CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCccee
Confidence 999994 34333222211 112234789999998 77777888889999999988888777741 345567788
Q ss_pred EEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceee
Q 018858 153 QFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQS 232 (349)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 232 (349)
+|+|. . .+. .+++.+++...+..|++|+..+++
T Consensus 247 ~~~pg-~-----------------------~~~------~~g~~~v~~~~~~~v~~~~~~~g~----------------- 279 (329)
T 3fvz_A 247 SYIPG-F-----------------------LFA------VNGKPYFGDQEPVQGFVMNFSSGE----------------- 279 (329)
T ss_dssp EEETT-E-----------------------EEE------EECCCCTTCSCCCCEEEEETTTCC-----------------
T ss_pred eecCC-E-----------------------EEE------eCCCEEeccCCCcEEEEEEcCCCe-----------------
Confidence 88871 0 000 034444444556689999988752
Q ss_pred eeccccEEEEeeeeeecCceeeeeeeee---cCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCC
Q 018858 233 TSKVNIRDAEMEILDQSGGKRLHLDYSV---GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 299 (349)
.+..+ .++...+..++++ |+|.++++...++.|++|++...
T Consensus 280 -----------------------~~~~~~~~~~~~~~p~~ia~~---~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 280 -----------------------IIDVFKPVRKHFDMPHDIVAS---EDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp -----------------------EEEEECCSSSCCSSEEEEEEC---TTSEEEEEESSSCCEEEEEEEEC
T ss_pred -----------------------EEEEEcCCCCccCCeeEEEEC---CCCCEEEEECCCCEEEEEeCCcc
Confidence 22222 3456678999999 89988888889999999998653
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.6e-14 Score=118.76 Aligned_cols=215 Identities=12% Similarity=0.035 Sum_probs=138.9
Q ss_pred CCeEEEEEecCCCEEEEEe---------CCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCC---C-
Q 018858 59 GPVTSLCFKSGNEDIIYVS---------SGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDG---G- 125 (349)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g- 125 (349)
..+...++ +|++++... .++.|.+||+.+++. ..+ ..+..++|+|+|++|+..+.+ +
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l-------~~~~~~~~SpDg~~la~~~~~~~~~~ 84 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNAR-RFI-------ENATMPRISPDGKKIAFMRANEEKKV 84 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCE-EEE-------ESCEEEEECTTSSEEEEEEEETTTTE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCce-EEc-------ccCCCeEECCCCCEEEEEEeccCCCc
Confidence 34566667 788877653 256799999987642 222 457889999999999877653 2
Q ss_pred -cEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcC--
Q 018858 126 -DVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG-- 202 (349)
Q Consensus 126 -~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-- 202 (349)
.|++||+.+++...... ... +..++|+| +++.|+.++.
T Consensus 85 ~~l~~~~~~~g~~~~l~~--~~~-~~~~~wsp------------------------------------dg~~l~~~~~~~ 125 (347)
T 2gop_A 85 SEIWVADLETLSSKKILE--AKN-IRSLEWNE------------------------------------DSRKLLIVGFKR 125 (347)
T ss_dssp EEEEEEETTTTEEEEEEE--ESE-EEEEEECT------------------------------------TSSEEEEEEECC
T ss_pred ceEEEEECCCCceEEEEc--CCC-ccceeECC------------------------------------CCCEEEEEEccC
Confidence 38888988887655444 333 88999999 6666666542
Q ss_pred -------------------------CCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeec----C-ce
Q 018858 203 -------------------------DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS----G-GK 252 (349)
Q Consensus 203 -------------------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~ 252 (349)
...|.+||+.+++....+.. . .+..+.|+||| .+++ +..+.. . ..
T Consensus 126 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~--~-~~~~~~~spdg-~~~~-~~~~~~~~~~~~~~ 200 (347)
T 2gop_A 126 REDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK--P-RFSSGIWHRDK-IVVN-VPHREIIPQYFKFW 200 (347)
T ss_dssp CC---------CCCC---------CEEEEEEEETTTTEEEEEEEE--E-TTCEEEEETTE-EEEE-EECCCSSCCSSCCE
T ss_pred CCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC--C-CcccccCCCCe-EEEE-Eecccccccccccc
Confidence 25799999988766232222 2 67889999999 4443 322210 0 00
Q ss_pred ee-----eeeeeecCCCcceEEEEEeeecCCccEEEEeeCC--------CeEEEEecCCCcceecccccceeeecccccc
Q 018858 253 RL-----HLDYSVGGHTAAASCVAFSMFGERGKYLISGGND--------KLVKVWDCSRFQGVQTSINNDLLIKNINLNK 319 (349)
Q Consensus 253 ~~-----~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d--------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 319 (349)
.. .....+..+ ..+..+ + |+|++|+.++.+ ..|++|| ++ ........+..
T Consensus 201 ~l~~~d~~~~~~l~~~-~~~~~~--s---pdg~~l~~~~~~~~~~~~~~~~l~~~d--~~---------~~~~l~~~~~~ 263 (347)
T 2gop_A 201 DIYIWEDGKEEKMFEK-VSFYAV--D---SDGERILLYGKPEKKYMSEHNKLYIYD--GK---------EVMGILDEVDR 263 (347)
T ss_dssp EEEEEETTEEEEEEEE-ESEEEE--E---ECSSCEEEEECCSSSCCCSSCEEEEEC--SS---------CEEESSTTCCS
T ss_pred cEEEeCCCceEEeccC-cceeeE--C---CCCCEEEEEEccccCCccccceEEEEC--CC---------ceEeccccCCc
Confidence 00 111222223 334433 6 899988877644 4688888 43 33334445667
Q ss_pred ceEE-EEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 320 KVNW-LCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 320 ~v~~-~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.+.. +.|+ ++ ++++++.++.+++| +
T Consensus 264 ~~~~~~~~s--dg-~~~~~~~~~~~~l~-~ 289 (347)
T 2gop_A 264 GVGQAKIKD--GK-VYFTLFEEGSVNLY-I 289 (347)
T ss_dssp EEEEEEEET--TE-EEEEEEETTEEEEE-E
T ss_pred ccCCccEEc--Cc-EEEEEecCCcEEEE-E
Confidence 7776 7785 66 88888999999999 6
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.6e-12 Score=108.56 Aligned_cols=268 Identities=10% Similarity=-0.027 Sum_probs=164.2
Q ss_pred EecCCCceEEEeCC--CC---cEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEe----------CCCeEEEEEc
Q 018858 23 ASRDRPGFVASSGE--DG---CICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVS----------SGKEVKSFDV 87 (349)
Q Consensus 23 ~~~~~~~~l~t~~~--dg---~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iwd~ 87 (349)
..|+ +++++.... .. .|.++|..+++.+..+.....+ .++++|++++++++. .++.|.+||.
T Consensus 28 ~~~~-~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 28 PGAD-GRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred CCCC-CCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 3455 666666653 33 7899999999988888765444 899999999999886 3678999999
Q ss_pred cCCCcccceeec-cC---cccceEEEEEccCCCEEEEEcC--CCcEEEEEcCCceEece-eccccccceeEEEEccCCCC
Q 018858 88 HMPASWRPLESY-NY---NKEEINQIVCNPKSSFLACADD--GGDVKIIDIRQHCLYKS-LRAGHSSICSSVQFIPWKPW 160 (349)
Q Consensus 88 ~~~~~~~~~~~~-~~---~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~ 160 (349)
.+.+....+..- .. .......++|+|++++|+++.. ++.|.++| .+++.+.. +. . .. ++.+.|+
T Consensus 105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~-~-~~---~~~~~~~--- 175 (373)
T 2mad_H 105 VTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS-S-PT---CYHIHPG--- 175 (373)
T ss_pred CCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC-C-Cc---eEEEEeC---
Confidence 876544333221 00 0123557899999999998874 47899999 99988777 65 2 21 2444452
Q ss_pred CCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecC-----CCCCCccceeeeec
Q 018858 161 EGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK-----STTKPLKGSQSTSK 235 (349)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~~~~~~~~~~ 235 (349)
..+.+++.+.||.+.++|. +++...... ...........+.+
T Consensus 176 --------------------------------~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~ 222 (373)
T 2mad_H 176 --------------------------------APSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQAN 222 (373)
T ss_pred --------------------------------CCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEe
Confidence 3355667778999999999 655442211 01111112234455
Q ss_pred cccEEEEeeee-eecC--c--eeeeeeeeecC----------CCcceEEEEEeeecCCccEEEEeeC----------CCe
Q 018858 236 VNIRDAEMEIL-DQSG--G--KRLHLDYSVGG----------HTAAASCVAFSMFGERGKYLISGGN----------DKL 290 (349)
Q Consensus 236 ~~~~~~~~~~~-~~~~--~--~~~~~~~~~~~----------h~~~i~~i~~~~~~~~~~~l~s~~~----------d~~ 290 (349)
++..++..... .... . ........+.- .......+.++ ++++.++.+.. ++.
T Consensus 223 ~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s---~d~~~lyV~~~~~~~~~~~~~~~~ 299 (373)
T 2mad_H 223 KSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYL---KSSDGIYLLTSEQSAWKLHAAAKE 299 (373)
T ss_pred cCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEEC---CCCCEEEEEeccCCcccccCCCCe
Confidence 54333221100 0000 0 00011111110 01223346777 78887776543 357
Q ss_pred EEEEecCCCcceecccccceeeeccccccceEEEEeecCCCC-cEEEee-CCCeEEEeeCC
Q 018858 291 VKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESE-NLVVCD-TSKVVKVYSIS 349 (349)
Q Consensus 291 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~-~dg~i~iw~~~ 349 (349)
|.++|..+. +.+..+ ........++|+| |++ .++++. .++.|.++|+.
T Consensus 300 V~VID~~t~---------~vv~~i-~~g~~p~~i~~s~-Dg~~~l~v~~~~~~~V~ViD~~ 349 (373)
T 2mad_H 300 VTSVTGLVG---------QTSSQI-SLGHDVDAISVAQ-DGGPDLYALSAGTEVLHIYDAG 349 (373)
T ss_pred EEEEECCCC---------EEEEEE-ECCCCcCeEEECC-CCCeEEEEEcCCCCeEEEEECC
Confidence 999999987 443333 2333678999988 787 777776 58999999963
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.61 E-value=8.2e-13 Score=108.96 Aligned_cols=272 Identities=13% Similarity=0.005 Sum_probs=167.6
Q ss_pred EEEecCCCceEEEeCC-----CCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEe----------CCCeEEEE
Q 018858 21 CIASRDRPGFVASSGE-----DGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVS----------SGKEVKSF 85 (349)
Q Consensus 21 ~~~~~~~~~~l~t~~~-----dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iw 85 (349)
....|+ ++.++.... ++.|.+.|..+++.+..+.....+ . ++++|+|+++++++ .++.|.+|
T Consensus 38 ~~~~pd-~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vsvi 114 (386)
T 3sjl_D 38 EAPAPD-ARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVF 114 (386)
T ss_dssp CCCCCC-TTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred eccCCC-CCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEE
Confidence 445677 666666544 679999999999999998876666 4 99999999988876 35789999
Q ss_pred EccCCCcccceeeccC----cccceEEEEEccCCCEEEEEcC--CCcEEEEEcCCceEeceeccccccceeEEEEccCCC
Q 018858 86 DVHMPASWRPLESYNY----NKEEINQIVCNPKSSFLACADD--GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKP 159 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 159 (349)
|..+.+....+..-.+ .......++++|+|++++++.. ++.|.++|+.+++.+.++. ... +....|.
T Consensus 115 D~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~-v~g----~~~~~P~-- 187 (386)
T 3sjl_D 115 DPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLD-VPD----CYHIFPT-- 187 (386)
T ss_dssp CTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE-CCS----EEEEEEE--
T ss_pred ECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEE-CCC----cceeecC--
Confidence 9998765544433110 0124567899999999888764 6889999999999988886 221 1122231
Q ss_pred CCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC-ceeeeec---CCCCCCcc-ceeeee
Q 018858 160 WEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES-ELNISRS---KSTTKPLK-GSQSTS 234 (349)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~---~~~~~~~~-~~~~~~ 234 (349)
..+.+++.+.||.+.+.++.. ++..... .......+ ....|.
T Consensus 188 ---------------------------------g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~ 234 (386)
T 3sjl_D 188 ---------------------------------APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYS 234 (386)
T ss_dssp ---------------------------------ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEE
T ss_pred ---------------------------------CCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeE
Confidence 345666777788888888865 3332211 11111112 123443
Q ss_pred -ccccEEEEeeeeeecCc----eeeeeeeeec---------C-CCcceEEEEEeeecCCccEEEEeeC----------CC
Q 018858 235 -KVNIRDAEMEILDQSGG----KRLHLDYSVG---------G-HTAAASCVAFSMFGERGKYLISGGN----------DK 289 (349)
Q Consensus 235 -~~~~~~~~~~~~~~~~~----~~~~~~~~~~---------~-h~~~i~~i~~~~~~~~~~~l~s~~~----------d~ 289 (349)
++|+++.++........ ........+. + .......+.++ ++++.++.... .+
T Consensus 235 ~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~---~~~~~lyV~~~~~~~~~hk~~~~ 311 (386)
T 3sjl_D 235 QKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYH---RALDRIYLLVDQRDEWRHKTASR 311 (386)
T ss_dssp TTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEE---TTTTEEEEEEEECCTTCTTSCEE
T ss_pred cCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeEC---CCCCeEEEEeccccccccCCCCC
Confidence 56655433211111000 0001111110 0 11223346667 78877776542 25
Q ss_pred eEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCC-cEEEe-eCCCeEEEeeCC
Q 018858 290 LVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESE-NLVVC-DTSKVVKVYSIS 349 (349)
Q Consensus 290 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~-~~dg~i~iw~~~ 349 (349)
.|.+.|+.+.+ .+..+. -...+.++++++ |++ .|+++ ..++.|.++|..
T Consensus 312 ~V~viD~~t~k---------v~~~i~-vg~~~~~lavs~-D~~~~ly~tn~~~~~VsViD~~ 362 (386)
T 3sjl_D 312 FVVVLDAKTGE---------RLAKFE-MGHEIDSINVSQ-DEKPLLYALSTGDKTLYIHDAE 362 (386)
T ss_dssp EEEEEETTTCC---------EEEEEE-EEEEECEEEECS-SSSCEEEEEETTTTEEEEEETT
T ss_pred EEEEEECCCCe---------EEEEEE-CCCCcceEEECC-CCCeEEEEEcCCCCeEEEEECC
Confidence 79999999984 333222 234788999988 665 66665 468999999863
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.5e-12 Score=104.76 Aligned_cols=243 Identities=9% Similarity=-0.031 Sum_probs=153.5
Q ss_pred CCCeeeeCCceeeeEEEEecCCCc-eEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 6 AKPRRLRGHKATATCCIASRDRPG-FVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~-~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
..+..+..+........|+|+ ++ ++++...++.|..|+. +++ ...+..+...+..++++++|+++++...++.|.+
T Consensus 35 ~~~~~l~~~~~~~egp~~~~~-g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~ 111 (305)
T 3dr2_A 35 ARLLTLYDQATWSEGPAWWEA-QRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITR 111 (305)
T ss_dssp CCCEEEECCCSSEEEEEEEGG-GTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred CceEEEecCCcCccCCeEeCC-CCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEE
Confidence 355666666667788999998 55 7788888899999998 454 3455556677899999999996665555678999
Q ss_pred EEccCCCcccceeeccCc-ccceEEEEEccCCCEEEE----EcC-------------CCcEEEEEcCCceEeceeccccc
Q 018858 85 FDVHMPASWRPLESYNYN-KEEINQIVCNPKSSFLAC----ADD-------------GGDVKIIDIRQHCLYKSLRAGHS 146 (349)
Q Consensus 85 wd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~~~~~~~~ 146 (349)
|+.. ++........... ...+..+++.|+|+++++ |.. .+.|+.+|..+++..... ..
T Consensus 112 ~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~---~~ 187 (305)
T 3dr2_A 112 SDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA---DL 187 (305)
T ss_dssp ECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE---EE
T ss_pred ECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe---cC
Confidence 9875 4321111111111 134678999999998876 432 245777777655432211 12
Q ss_pred cceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCC------CeEEEEEccCceeeeec
Q 018858 147 SICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD------GVVDVINIESELNISRS 220 (349)
Q Consensus 147 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~ 220 (349)
.....++|+| +++.|+++... +.|..|++.... ..
T Consensus 188 ~~p~gl~~sp------------------------------------dg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~-- 228 (305)
T 3dr2_A 188 DHPNGLAFSP------------------------------------DEQTLYVSQTPEQGHGSVEITAFAWRDGA-LH-- 228 (305)
T ss_dssp SSEEEEEECT------------------------------------TSSEEEEEECCC---CCCEEEEEEEETTE-EE--
T ss_pred CCCcceEEcC------------------------------------CCCEEEEEecCCcCCCCCEEEEEEecCCC-cc--
Confidence 2356678888 78877766554 689999987531 00
Q ss_pred CCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCc
Q 018858 221 KSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ 300 (349)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 300 (349)
........ ..+.+..+.++ ++|++.++ ..+ .|.+|+...
T Consensus 229 --------------------------------~~~~~~~~--~~~~pdgi~~d---~~G~lwv~-~~~-gv~~~~~~g-- 267 (305)
T 3dr2_A 229 --------------------------------DRRHFASV--PDGLPDGFCVD---RGGWLWSS-SGT-GVCVFDSDG-- 267 (305)
T ss_dssp --------------------------------EEEEEECC--SSSCCCSEEEC---TTSCEEEC-CSS-EEEEECTTS--
T ss_pred --------------------------------CCeEEEEC--CCCCCCeEEEC---CCCCEEEe-cCC-cEEEECCCC--
Confidence 00111111 22345678888 89985544 444 499999854
Q ss_pred ceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEE
Q 018858 301 GVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKV 345 (349)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 345 (349)
..+..+.... .+..++|.+ +++.|+.++.++..++
T Consensus 268 --------~~~~~~~~~~-~~~~~~f~~-d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 268 --------QLLGHIPTPG-TASNCTFDQ-AQQRLFITGGPCLWML 302 (305)
T ss_dssp --------CEEEEEECSS-CCCEEEECT-TSCEEEEEETTEEEEE
T ss_pred --------CEEEEEECCC-ceeEEEEeC-CCCEEEEEcCCeEEEE
Confidence 3333333333 578889985 7777888777654433
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-13 Score=124.76 Aligned_cols=232 Identities=9% Similarity=-0.026 Sum_probs=142.0
Q ss_pred EecCCCceEEEeCCCC-----cEEEEECCCCcEEEEee------cCCCCeEEEEEecCCCEEEEE-----eCCCeEEEEE
Q 018858 23 ASRDRPGFVASSGEDG-----CICWFDLRSKDVQLVTD------VGNGPVTSLCFKSGNEDIIYV-----SSGKEVKSFD 86 (349)
Q Consensus 23 ~~~~~~~~l~t~~~dg-----~i~vwd~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~-----~~dg~i~iwd 86 (349)
.+|+ |++++....++ .|.+.+...++....+. +|...+..++|||+|++||.+ +.+..|++||
T Consensus 75 p~~d-G~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~d 153 (695)
T 2bkl_A 75 PSRR-NGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVID 153 (695)
T ss_dssp CEEE-TTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEE
T ss_pred CEEE-CCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEE
Confidence 3477 66665444332 34444544454333332 344568899999999999854 3346899999
Q ss_pred ccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCc-------------EEEEEcCCce----Eeceeccccccce
Q 018858 87 VHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGD-------------VKIIDIRQHC----LYKSLRAGHSSIC 149 (349)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-------------i~i~d~~~~~----~~~~~~~~~~~~v 149 (349)
+.+++... ...+.. .....++|+||++.|+.++.+.. |++|++.++. .+.... .+...+
T Consensus 154 l~tg~~~~-~~~~~~--~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~-~~~~~~ 229 (695)
T 2bkl_A 154 VDSGEWSK-VDVIEG--GKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERT-GDPTTF 229 (695)
T ss_dssp TTTCCBCS-SCCBSC--CTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCC-CCTTCE
T ss_pred CCCCCCcC-CcccCc--ccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecC-CCCEEE
Confidence 99875431 111111 11267899999999998888765 9999998765 333333 344567
Q ss_pred eEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCC----eEEEEEccCceeeeecCCCCC
Q 018858 150 SSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG----VVDVINIESELNISRSKSTTK 225 (349)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~ 225 (349)
..+.|+| +|++|+..+.++ .|.+++..++
T Consensus 230 ~~~~~Sp------------------------------------DG~~l~~~~~~~~~~~~l~~~~~~~~----------- 262 (695)
T 2bkl_A 230 LQSDLSR------------------------------------DGKYLFVYILRGWSENDVYWKRPGEK----------- 262 (695)
T ss_dssp EEEEECT------------------------------------TSCCEEEEEEETTTEEEEEEECTTCS-----------
T ss_pred EEEEECC------------------------------------CCCEEEEEEeCCCCceEEEEEcCCCC-----------
Confidence 8889999 788887776555 5666654331
Q ss_pred CccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEee---CCCeEEEEecCCCcce
Q 018858 226 PLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG---NDKLVKVWDCSRFQGV 302 (349)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~---~d~~i~vwd~~~~~~~ 302 (349)
....+..+...+....+. +|.+++... .++.|++||+.++...
T Consensus 263 ------------------------------~~~~l~~~~~~~~~~~~~----~g~l~~~s~~~~~~~~l~~~d~~~~~~~ 308 (695)
T 2bkl_A 263 ------------------------------DFRLLVKGVGAKYEVHAW----KDRFYVLTDEGAPRQRVFEVDPAKPARA 308 (695)
T ss_dssp ------------------------------SCEEEEECSSCCEEEEEE----TTEEEEEECTTCTTCEEEEEBTTBCSGG
T ss_pred ------------------------------ceEEeecCCCceEEEEec----CCcEEEEECCCCCCCEEEEEeCCCCCcc
Confidence 112223333444444444 455545444 3588999999775310
Q ss_pred ecccccceeeecccc-ccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 303 QTSINNDLLIKNINL-NKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 303 ~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
........+ ...+..++++ ++.++++...|+..++|.+
T Consensus 309 ------~~~~l~~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~ 347 (695)
T 2bkl_A 309 ------SWKEIVPEDSSASLLSVSIV--GGHLSLEYLKDATSEVRVA 347 (695)
T ss_dssp ------GCEEEECCCSSCEEEEEEEE--TTEEEEEEEETTEEEEEEE
T ss_pred ------CCeEEecCCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEE
Confidence 011122222 4467778885 5667888889999888854
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.7e-13 Score=109.23 Aligned_cols=215 Identities=8% Similarity=-0.027 Sum_probs=144.3
Q ss_pred CCCCcEEEEECCCCcEEEEee------cCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEE
Q 018858 35 GEDGCICWFDLRSKDVQLVTD------VGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQ 108 (349)
Q Consensus 35 ~~dg~i~vwd~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 108 (349)
+.++.|.++|.++++....+. ........+.+. .++..++...++.|.+||..+++....+.. ......
T Consensus 14 ~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~----~~~p~~ 88 (328)
T 3dsm_A 14 YSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG----FTSPRY 88 (328)
T ss_dssp SCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC----CSSEEE
T ss_pred CCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC----CCCCcE
Confidence 348999999999988765442 112345677774 344555556679999999998765444432 356888
Q ss_pred EEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccc-----cceeEEEEccCCCCCCCCCCCCCCccccCCceeEEee
Q 018858 109 IVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHS-----SICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIA 183 (349)
Q Consensus 109 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (349)
++++++++.+++...++.|.+||..+++....+. ... .....+++ .
T Consensus 89 i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~-~g~~~~~~~~p~~i~~-~--------------------------- 139 (328)
T 3dsm_A 89 IHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIE-CPDMDMESGSTEQMVQ-Y--------------------------- 139 (328)
T ss_dssp EEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEE-CTTCCTTTCBCCCEEE-E---------------------------
T ss_pred EEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEE-cCCccccCCCcceEEE-E---------------------------
Confidence 9998888555555478999999999998877665 221 14455666 3
Q ss_pred cCcccccCCCCcEEEEEc-CCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecC
Q 018858 184 IPDADMLDKTNKICVVAK-GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGG 262 (349)
Q Consensus 184 ~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (349)
++..+++.. .++.|.++|+.+++. ...+..
T Consensus 140 ---------~~~lyv~~~~~~~~v~viD~~t~~~----------------------------------------~~~i~~ 170 (328)
T 3dsm_A 140 ---------GKYVYVNCWSYQNRILKIDTETDKV----------------------------------------VDELTI 170 (328)
T ss_dssp ---------TTEEEEEECTTCCEEEEEETTTTEE----------------------------------------EEEEEC
T ss_pred ---------CCEEEEEcCCCCCEEEEEECCCCeE----------------------------------------EEEEEc
Confidence 455555544 488999999987532 122221
Q ss_pred CCcceEEEEEeeecCCccEEEEeeCC----------CeEEEEecCCCcceecccccceeeecc-ccccceEEEEeecCCC
Q 018858 263 HTAAASCVAFSMFGERGKYLISGGND----------KLVKVWDCSRFQGVQTSINNDLLIKNI-NLNKKVNWLCTTPTES 331 (349)
Q Consensus 263 h~~~i~~i~~~~~~~~~~~l~s~~~d----------~~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~ 331 (349)
......+.++ ++|++++++..+ +.|.++|..++ ++..... .....+..++++| ++
T Consensus 171 -g~~p~~i~~~---~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~---------~v~~~~~~~~g~~p~~la~~~-d~ 236 (328)
T 3dsm_A 171 -GIQPTSLVMD---KYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF---------TVEKQFKFKLGDWPSEVQLNG-TR 236 (328)
T ss_dssp -SSCBCCCEEC---TTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT---------EEEEEEECCTTCCCEEEEECT-TS
T ss_pred -CCCccceEEc---CCCCEEEEECCCccCCccccCCceEEEEECCCC---------eEEEEEecCCCCCceeEEEec-CC
Confidence 1234577888 889887777654 78999999886 3332222 1134678999988 67
Q ss_pred CcEEEeeCCCeEEEeeC
Q 018858 332 ENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 332 ~~l~~~~~dg~i~iw~~ 348 (349)
+.|+++.. .|.+||.
T Consensus 237 ~~lyv~~~--~v~~~d~ 251 (328)
T 3dsm_A 237 DTLYWINN--DIWRMPV 251 (328)
T ss_dssp CEEEEESS--SEEEEET
T ss_pred CEEEEEcc--EEEEEEC
Confidence 77877755 8888885
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.60 E-value=8.6e-13 Score=107.07 Aligned_cols=203 Identities=10% Similarity=-0.035 Sum_probs=135.1
Q ss_pred EEEeecCCCCeEEEEEecCCC-EEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEE
Q 018858 51 QLVTDVGNGPVTSLCFKSGNE-DIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKI 129 (349)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 129 (349)
+..+..+.....+++|+|+++ .++++..++.|..|+..++ . ..+..+...+.+++++|+++++++...++.|.+
T Consensus 20 ~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~---~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~ 94 (296)
T 3e5z_A 20 ARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--L---SPEMHPSHHQNGHCLNKQGHLIACSHGLRRLER 94 (296)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--E---EEEESSCSSEEEEEECTTCCEEEEETTTTEEEE
T ss_pred EEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--e---EEEECCCCCcceeeECCCCcEEEEecCCCeEEE
Confidence 344555666788999999998 6777888899999998864 2 233334567899999999998888777789999
Q ss_pred EEcCCceEeceecc---ccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEE----EcC
Q 018858 130 IDIRQHCLYKSLRA---GHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV----AKG 202 (349)
Q Consensus 130 ~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~ 202 (349)
||..+++....... .....+..++++| +|+++++ |+.
T Consensus 95 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~------------------------------------~G~l~vtd~~~g~~ 138 (296)
T 3e5z_A 95 QREPGGEWESIADSFEGKKLNSPNDVCLAP------------------------------------DGSLWFSDPTYGID 138 (296)
T ss_dssp ECSTTCCEEEEECEETTEECCCCCCEEECT------------------------------------TSCEEEEECSHHHH
T ss_pred EcCCCCcEEEEeeccCCCCCCCCCCEEECC------------------------------------CCCEEEECCccccc
Confidence 99977765433220 1122456677877 7887776 331
Q ss_pred -------------CCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEE
Q 018858 203 -------------DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASC 269 (349)
Q Consensus 203 -------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 269 (349)
.+.|..++.. + . ...+..+....+.
T Consensus 139 ~~~~~~~~~~~~~~~~l~~~~~~-g----------------------------------------~-~~~~~~~~~~~~g 176 (296)
T 3e5z_A 139 KPEEGYGGEMELPGRWVFRLAPD-G----------------------------------------T-LSAPIRDRVKPNG 176 (296)
T ss_dssp CGGGSSCCCCCSSSCEEEEECTT-S----------------------------------------C-EEEEECCCSSEEE
T ss_pred cccccccccccCCCcEEEEECCC-C----------------------------------------C-EEEeecCCCCCcc
Confidence 2344444433 1 1 1122234456788
Q ss_pred EEEeeecCCccEEEEeeCCCeEEEEecC-CCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 270 VAFSMFGERGKYLISGGNDKLVKVWDCS-RFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 270 i~~~~~~~~~~~l~s~~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
++|+ |+++++++.+.++.|++|++. .+.... . ...+..+...+..+++.+ +|+++++. ++.|.+|+.
T Consensus 177 i~~s---~dg~~lv~~~~~~~i~~~~~~~~g~~~~-----~-~~~~~~~~~~p~~i~~d~-~G~l~v~~--~~~v~~~~~ 244 (296)
T 3e5z_A 177 LAFL---PSGNLLVSDTGDNATHRYCLNARGETEY-----Q-GVHFTVEPGKTDGLRVDA-GGLIWASA--GDGVHVLTP 244 (296)
T ss_dssp EEEC---TTSCEEEEETTTTEEEEEEECSSSCEEE-----E-EEEECCSSSCCCSEEEBT-TSCEEEEE--TTEEEEECT
T ss_pred EEEC---CCCCEEEEeCCCCeEEEEEECCCCcCcC-----C-CeEeeCCCCCCCeEEECC-CCCEEEEc--CCeEEEECC
Confidence 9999 899988777888999999997 331100 0 111123455677889977 77655444 888999985
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.9e-13 Score=106.46 Aligned_cols=168 Identities=11% Similarity=0.014 Sum_probs=128.9
Q ss_pred cCCCCeeeeCCc-eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCC-CCeEEEEEecCCCEEEEEeC-CC
Q 018858 4 AEAKPRRLRGHK-ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGN-GPVTSLCFKSGNEDIIYVSS-GK 80 (349)
Q Consensus 4 ~~~~~~~l~~h~-~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~-dg 80 (349)
+++.+.++..+. ..+.++.++|+ ++++++ .++.|..||. +++.+..+..+. ..+.++.+.++|+.+++.+. ++
T Consensus 24 tG~~~w~~~~~~~~~~~~~~~~pd-G~ilvs--~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~ 99 (276)
T 3no2_A 24 TKEIVWEYPLEKGWECNSVAATKA-GEILFS--YSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPS 99 (276)
T ss_dssp TTEEEEEEECCTTCCCCEEEECTT-SCEEEE--CBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTE
T ss_pred CCeEEEEeCCCccCCCcCeEECCC-CCEEEe--CCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCC
Confidence 677888888776 57889999998 788884 3678999998 899999888753 57888999999999999887 77
Q ss_pred eEEEEEccCCCcccceeec---cCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccC
Q 018858 81 EVKSFDVHMPASWRPLESY---NYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPW 157 (349)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 157 (349)
.|..+|. +++....+..- ..+......++..++++++++...++.|..||.+ ++.+.++. .. ....++.+.+
T Consensus 100 ~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~-~~-~~~~~~~~~~- 174 (276)
T 3no2_A 100 TILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVK-LS-GTPFSSAFLD- 174 (276)
T ss_dssp EEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEE-CS-SCCCEEEECT-
T ss_pred EEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEE-CC-CCccceeEcC-
Confidence 7877775 44433333211 1112234556788999999999999999999988 99888887 33 4455666666
Q ss_pred CCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCce
Q 018858 158 KPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL 215 (349)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 215 (349)
++++++++..+++|..+|..+++
T Consensus 175 -----------------------------------~g~~~v~~~~~~~v~~~d~~tG~ 197 (276)
T 3no2_A 175 -----------------------------------NGDCLVACGDAHCFVQLNLESNR 197 (276)
T ss_dssp -----------------------------------TSCEEEECBTTSEEEEECTTTCC
T ss_pred -----------------------------------CCCEEEEeCCCCeEEEEeCcCCc
Confidence 78899888888899999998764
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.7e-13 Score=122.62 Aligned_cols=231 Identities=6% Similarity=-0.024 Sum_probs=143.3
Q ss_pred cCCCceEEEeC-CCC----cEEEEECCCCcEEEEee------cCCCCeEEEEEecCCCEEEEEeCCC-----eEEEEEcc
Q 018858 25 RDRPGFVASSG-EDG----CICWFDLRSKDVQLVTD------VGNGPVTSLCFKSGNEDIIYVSSGK-----EVKSFDVH 88 (349)
Q Consensus 25 ~~~~~~l~t~~-~dg----~i~vwd~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~ 88 (349)
|+ |++++... ..+ .|.+.+...++....+. +|...+..++|||+|++|+.++.++ .|++||+.
T Consensus 81 ~d-G~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~ 159 (710)
T 2xdw_A 81 KK-GKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD 159 (710)
T ss_dssp EE-TTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT
T ss_pred EE-CCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECC
Confidence 77 55555332 222 34444544444332222 2334578899999999998876533 89999999
Q ss_pred CCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCc----------------EEEEEcCCceE----eceeccccccc
Q 018858 89 MPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGD----------------VKIIDIRQHCL----YKSLRAGHSSI 148 (349)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~----------------i~i~d~~~~~~----~~~~~~~~~~~ 148 (349)
+++.... ... ...+..++|+||++.|+.++.++. |++|++.+++. +.... .+...
T Consensus 160 tg~~~~~--~~~--~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~-~~~~~ 234 (710)
T 2xdw_A 160 GAKELPD--VLE--RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFP-DEPKW 234 (710)
T ss_dssp TTEEEEE--EEE--EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCT-TCTTC
T ss_pred CCCCCcc--ccc--CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccC-CCCeE
Confidence 8754322 111 123677999999999998887765 99999987652 22222 23445
Q ss_pred eeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcC-----CCeEEEEEccC------ceee
Q 018858 149 CSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG-----DGVVDVINIES------ELNI 217 (349)
Q Consensus 149 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~------~~~~ 217 (349)
+..+.|+| ++++|+..+. +..|.+||+.+ +.
T Consensus 235 ~~~~~~Sp------------------------------------Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~-- 276 (710)
T 2xdw_A 235 MGGAELSD------------------------------------DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGI-- 276 (710)
T ss_dssp EEEEEECT------------------------------------TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSS--
T ss_pred EEEEEEcC------------------------------------CCCEEEEEEEccCCCccEEEEEECcccccccCCc--
Confidence 67888998 7888877654 56899999875 20
Q ss_pred eecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeC----CCeEEE
Q 018858 218 SRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN----DKLVKV 293 (349)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~----d~~i~v 293 (349)
.....+..+...+.. .|+ ++|+.|+..+. .+.|++
T Consensus 277 -------------------------------------~~~~~l~~~~~~~~~-~~s---~dg~~l~~~s~~~~~~~~l~~ 315 (710)
T 2xdw_A 277 -------------------------------------LKWVKLIDNFEGEYD-YVT---NEGTVFTFKTNRHSPNYRLIN 315 (710)
T ss_dssp -------------------------------------CCCEEEECSSSSCEE-EEE---EETTEEEEEECTTCTTCEEEE
T ss_pred -------------------------------------cceEEeeCCCCcEEE-EEe---ccCCEEEEEECCCCCCCEEEE
Confidence 012233344444443 367 67777665554 246999
Q ss_pred EecCCCcceecccccceeeecccccc--ceEEEEeecCCCCcEEEeeCCCeE--EEeeC
Q 018858 294 WDCSRFQGVQTSINNDLLIKNINLNK--KVNWLCTTPTESENLVVCDTSKVV--KVYSI 348 (349)
Q Consensus 294 wd~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg~i--~iw~~ 348 (349)
||+.++.. .....+..|.. .+..++|++ ++.++++...|+.. ++|++
T Consensus 316 ~d~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~-~~~lv~~~~~~g~~~l~~~~~ 366 (710)
T 2xdw_A 316 IDFTDPEE-------SKWKVLVPEHEKDVLEWVACVR-SNFLVLCYLHDVKNTLQLHDL 366 (710)
T ss_dssp EETTSCCG-------GGCEEEECCCSSCEEEEEEEET-TTEEEEEEEETTEEEEEEEET
T ss_pred EeCCCCCc-------ccceeccCCCCCCeEEEEEEEc-CCEEEEEEEECCEEEEEEEEC
Confidence 99987521 01223334433 677888875 66677888888854 44554
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.59 E-value=5.7e-13 Score=106.56 Aligned_cols=199 Identities=6% Similarity=-0.052 Sum_probs=140.7
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccc
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRP 95 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 95 (349)
..+.+++++++ ++++++.. ++.|.+||................+..++++++++.+++...++.|.+|+..+... .
T Consensus 67 ~~p~~i~~~~~-g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~--~ 142 (270)
T 1rwi_B 67 YQPQGLAVDGA-GTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ--T 142 (270)
T ss_dssp CSCCCEEECTT-CCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC--E
T ss_pred CCcceeEECCC-CCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee--E
Confidence 46788999998 67666666 88999999876554322222335789999999998777777788999997554321 1
Q ss_pred eeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccC
Q 018858 96 LESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYN 175 (349)
Q Consensus 96 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (349)
.. .......+..++++++++.+++...++.|.+||........... .....+.++++.+
T Consensus 143 ~~-~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~-~~~~~p~~i~~d~------------------- 201 (270)
T 1rwi_B 143 VL-PFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPF-TDITAPWGIAVDE------------------- 201 (270)
T ss_dssp EC-CCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCC-SSCCSEEEEEECT-------------------
T ss_pred ee-ccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecc-cCCCCceEEEECC-------------------
Confidence 11 11122457889999999877777778899999988665443322 2335677888887
Q ss_pred CceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeee
Q 018858 176 PAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLH 255 (349)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (349)
++.++++...++.|.+|+.....
T Consensus 202 -----------------~g~l~v~~~~~~~v~~~~~~~~~---------------------------------------- 224 (270)
T 1rwi_B 202 -----------------AGTVYVTEHNTNQVVKLLAGSTT---------------------------------------- 224 (270)
T ss_dssp -----------------TCCEEEEETTTSCEEEECTTCSC----------------------------------------
T ss_pred -----------------CCCEEEEECCCCcEEEEcCCCCc----------------------------------------
Confidence 77777777778899999987531
Q ss_pred eeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCC
Q 018858 256 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 256 ~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 299 (349)
.......+...+.+++++ ++|+++++...++.|+++++...
T Consensus 225 ~~~~~~~~~~~p~~i~~~---~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 225 STVLPFTGLNTPLAVAVD---SDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp CEECCCCSCSCEEEEEEC---TTCCEEEEEGGGTEEEEECCCGG
T ss_pred ceeeccCCCCCceeEEEC---CCCCEEEEECCCCEEEEEcCCCc
Confidence 001111223567899999 89998888889999999998875
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-11 Score=101.67 Aligned_cols=229 Identities=10% Similarity=-0.005 Sum_probs=146.5
Q ss_pred eeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccce
Q 018858 17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPL 96 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 96 (349)
-..+..|+|+++.++++...++.|..||..+++.. .+. ....+.+++++++++++++. .+ .|.+||.++++. ..+
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~-~~~ 124 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVL-TLH 124 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCE-EEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcE-EEE
Confidence 35678899975667777777899999999877643 333 34679999999999876654 44 499999877643 222
Q ss_pred eecc--CcccceEEEEEccCCCEEEEEcC------CCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCC
Q 018858 97 ESYN--YNKEEINQIVCNPKSSFLACADD------GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNG 168 (349)
Q Consensus 97 ~~~~--~~~~~v~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 168 (349)
.... .....+..++++|+++++++... .+.|..++ +++.. .+. ........++|+|
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~-~~~~~~~~i~~s~------------ 188 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLF-ADISIPNSICFSP------------ 188 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEE-EEESSEEEEEECT------------
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-Eee-CCCcccCCeEEcC------------
Confidence 2211 11245889999999987665432 24566666 45433 222 2233456788888
Q ss_pred CCccccCCceeEEeecCcccccCCCCcEEE-EEcCCCeEEEEEcc--Cc-eeeeecCCCCCCccceeeeeccccEEEEee
Q 018858 169 NAGQCYNPAFVHAIAIPDADMLDKTNKICV-VAKGDGVVDVINIE--SE-LNISRSKSTTKPLKGSQSTSKVNIRDAEME 244 (349)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~i~d~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (349)
+++.++ +.+.++.|.+||+. ++ ..
T Consensus 189 ------------------------dg~~lyv~~~~~~~I~~~d~~~~~Gl~~---------------------------- 216 (326)
T 2ghs_A 189 ------------------------DGTTGYFVDTKVNRLMRVPLDARTGLPT---------------------------- 216 (326)
T ss_dssp ------------------------TSCEEEEEETTTCEEEEEEBCTTTCCBS----------------------------
T ss_pred ------------------------CCCEEEEEECCCCEEEEEEcccccCCcc----------------------------
Confidence 677554 44567899999986 32 10
Q ss_pred eeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEE
Q 018858 245 ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWL 324 (349)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 324 (349)
........+......+..+.++ ++|++.++...++.|.+||.. + ..+..+..+...++++
T Consensus 217 -------~~~~~~~~~~~~~~~p~gi~~d---~~G~lwva~~~~~~v~~~d~~-g---------~~~~~i~~~~~~~~~~ 276 (326)
T 2ghs_A 217 -------GKAEVFIDSTGIKGGMDGSVCD---AEGHIWNARWGEGAVDRYDTD-G---------NHIARYEVPGKQTTCP 276 (326)
T ss_dssp -------SCCEEEEECTTSSSEEEEEEEC---TTSCEEEEEETTTEEEEECTT-C---------CEEEEEECSCSBEEEE
T ss_pred -------cCceEEEECCCCCCCCCeeEEC---CCCCEEEEEeCCCEEEEECCC-C---------CEEEEEECCCCCcEEE
Confidence 0001112222334456788888 889887777667899999984 3 3344444455678999
Q ss_pred EeecCCCCcEEEee
Q 018858 325 CTTPTESENLVVCD 338 (349)
Q Consensus 325 ~~~~~~~~~l~~~~ 338 (349)
+|..++++.|++++
T Consensus 277 af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 277 AFIGPDASRLLVTS 290 (326)
T ss_dssp EEESTTSCEEEEEE
T ss_pred EEecCCCCEEEEEe
Confidence 99733666565543
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=7.4e-13 Score=120.06 Aligned_cols=242 Identities=13% Similarity=0.050 Sum_probs=146.5
Q ss_pred CCceeeeEEEEecCCCceEE-----EeCCCCcEEEEECCCCcEEEE-eecCCCCeEEEEEecCCCEEEEEeCCC------
Q 018858 13 GHKATATCCIASRDRPGFVA-----SSGEDGCICWFDLRSKDVQLV-TDVGNGPVTSLCFKSGNEDIIYVSSGK------ 80 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~-----t~~~dg~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg------ 80 (349)
+|...+..++|||+ +++|+ .|+....|++||+.+++.+.. +... ....++|+ |++.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpD-g~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~~ 201 (693)
T 3iuj_A 126 DGTTALDQLSFSRD-GRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV--KFSGISWL-GNEGFFYSSYDKPDGSEL 201 (693)
T ss_dssp TSCCEEEEEEECTT-SSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE--ESCCCEEE-TTTEEEEEESSCCC----
T ss_pred CCcEEEEEEEECCC-CCEEEEEEecCCCceEEEEEEECCCCCCCccccCCc--eeccEEEe-CCCEEEEEEecCcccccc
Confidence 35567889999999 78777 344446899999999986543 2211 12467899 999999988773
Q ss_pred -------eEEEEEccCCCcc-cceeeccC-cccceEEEEEccCCCEEEEEcC----CCcEEEEEcCCce-Eeceeccccc
Q 018858 81 -------EVKSFDVHMPASW-RPLESYNY-NKEEINQIVCNPKSSFLACADD----GGDVKIIDIRQHC-LYKSLRAGHS 146 (349)
Q Consensus 81 -------~i~iwd~~~~~~~-~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~-~~~~~~~~~~ 146 (349)
.|++|++.++... ..+..... +......+.|+|++++|+.... ...|+++|+.++. ....+. .+.
T Consensus 202 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~-~~~ 280 (693)
T 3iuj_A 202 SARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQ-GDL 280 (693)
T ss_dssp ---CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEE-CSS
T ss_pred cccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEe-CCC
Confidence 4999998875321 22333332 3345678999999998865432 3479999997653 233444 343
Q ss_pred cceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCC---CeEEEEEccCceeeeecCCC
Q 018858 147 SICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD---GVVDVINIESELNISRSKST 223 (349)
Q Consensus 147 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~ 223 (349)
...... ++++ .+.+++....+ +.|..+|+.++..
T Consensus 281 ~~~~~~-~~~~-----------------------------------g~~l~~~t~~~~~~~~l~~~d~~~~~~------- 317 (693)
T 3iuj_A 281 DADVSL-VDNK-----------------------------------GSTLYLLTNRDAPNRRLVTVDAANPGP------- 317 (693)
T ss_dssp SSCEEE-EEEE-----------------------------------TTEEEEEECTTCTTCEEEEEETTSCCG-------
T ss_pred CceEEE-Eecc-----------------------------------CCEEEEEECCCCCCCEEEEEeCCCCCc-------
Confidence 333333 4451 23444444433 5788888876310
Q ss_pred CCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeC-CC--eEEEEecCCCc
Q 018858 224 TKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN-DK--LVKVWDCSRFQ 300 (349)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~-d~--~i~vwd~~~~~ 300 (349)
.....+..|...+. .|+ +++++|+.... ++ .|++||+...
T Consensus 318 -------------------------------~~~~~l~~~~~~~~--~~s---~~g~~lv~~~~~~g~~~l~~~d~~g~- 360 (693)
T 3iuj_A 318 -------------------------------AHWRDLIPERQQVL--TVH---SGSGYLFAEYMVDATARVEQFDYEGK- 360 (693)
T ss_dssp -------------------------------GGCEEEECCCSSCE--EEE---EETTEEEEEEEETTEEEEEEECTTSC-
T ss_pred -------------------------------cccEEEecCCCCEE--EEE---EECCEEEEEEEECCeeEEEEEECCCC-
Confidence 00122334444443 777 67777766654 44 6899998854
Q ss_pred ceecccccceeeeccccccceEEEEeecCCCCcEEEeeCC----CeEEEeeC
Q 018858 301 GVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTS----KVVKVYSI 348 (349)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~iw~~ 348 (349)
............+..+.+++ +++.|+....+ +.++.||+
T Consensus 361 --------~~~~l~~p~~~~~~~~~~~~-d~~~l~~~~ss~~tP~~l~~~d~ 403 (693)
T 3iuj_A 361 --------RVREVALPGLGSVSGFNGKH-DDPALYFGFENYAQPPTLYRFEP 403 (693)
T ss_dssp --------EEEEECCSSSSEEEECCCCT-TCSCEEEEEECSSSCCEEEEECT
T ss_pred --------eeEEeecCCCceEEeeecCC-CCCEEEEEecCCCCCCEEEEEEC
Confidence 22222223344566666766 55555544333 78888876
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=5.5e-11 Score=96.33 Aligned_cols=237 Identities=4% Similarity=-0.073 Sum_probs=153.8
Q ss_pred cCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCc
Q 018858 56 VGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQH 135 (349)
Q Consensus 56 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 135 (349)
.+...+.++++.++|+..++...++.|.+||.. ++ ...+. .......+..+++.+++..+++...++.|..||.. +
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~-~~~~~-~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g 87 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GK-ITEYP-LPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G 87 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CC-EEEEE-CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CC-eEEec-CCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence 345678999999999877766667899999987 43 22221 12234678899999999888887778889999976 3
Q ss_pred eEeceecc-ccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCc
Q 018858 136 CLYKSLRA-GHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE 214 (349)
Q Consensus 136 ~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 214 (349)
+. ..+.. .....+.++++.| +++++++...++.|..||. ++
T Consensus 88 ~~-~~~~~~~~~~~~~~i~~~~------------------------------------~g~l~v~~~~~~~i~~~d~-~g 129 (299)
T 2z2n_A 88 II-KEYTLPNPDSAPYGITEGP------------------------------------NGDIWFTEMNGNRIGRITD-DG 129 (299)
T ss_dssp CE-EEEECSSTTCCEEEEEECT------------------------------------TSCEEEEETTTTEEEEECT-TC
T ss_pred cE-EEEeCCCcCCCceeeEECC------------------------------------CCCEEEEecCCceEEEECC-CC
Confidence 32 22220 2344677788877 7888887777889999998 44
Q ss_pred eeeeecCCCCCCccceeeeeccccEEEEee---eeeecCceeeeee-eeecCCCcceEEEEEeeecCCccEEEEeeCCCe
Q 018858 215 LNISRSKSTTKPLKGSQSTSKVNIRDAEME---ILDQSGGKRLHLD-YSVGGHTAAASCVAFSMFGERGKYLISGGNDKL 290 (349)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~ 290 (349)
+...............+++.++|..+++.. ....... ..... ..+..+...+..++++ +++++.++...++.
T Consensus 130 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~---~~g~l~v~~~~~~~ 205 (299)
T 2z2n_A 130 KIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKG---NDDALWFVEIIGNK 205 (299)
T ss_dssp CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC---TTSSEEEEETTTTE
T ss_pred CEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEEC---CCCCEEEEccCCce
Confidence 333322222344567889999998776431 1111111 11111 1122334567899999 88888777777889
Q ss_pred EEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 291 VKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 291 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
|.+||. ++.. .......+...+.++++.+ ++++.++...++.|..|+.
T Consensus 206 i~~~~~-~g~~--------~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 206 IGRITT-SGEI--------TEFKIPTPNARPHAITAGA-GIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp EEEECT-TCCE--------EEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEEET
T ss_pred EEEECC-CCcE--------EEEECCCCCCCceeEEECC-CCCEEEeccCCceEEEECC
Confidence 999998 5421 1111223456788999977 6765555547788888874
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.55 E-value=7.5e-12 Score=105.11 Aligned_cols=266 Identities=11% Similarity=0.027 Sum_probs=163.2
Q ss_pred CceEEEeCC-C----CcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEe----------CCCeEEEEEccCCCc
Q 018858 28 PGFVASSGE-D----GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVS----------SGKEVKSFDVHMPAS 92 (349)
Q Consensus 28 ~~~l~t~~~-d----g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~ 92 (349)
++.++.... + +.|.+.|..+++.+..+.....+ .++++|++++++++. .++.|.++|..+.+.
T Consensus 84 ~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~v 161 (426)
T 3c75_H 84 ARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLP 161 (426)
T ss_dssp TTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE
T ss_pred CCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcE
Confidence 455554433 2 69999999999999999876666 899999999998876 367899999998765
Q ss_pred ccceeec-cC---cccceEEEEEccCCCEEEEEcC--CCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCC
Q 018858 93 WRPLESY-NY---NKEEINQIVCNPKSSFLACADD--GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPEN 166 (349)
Q Consensus 93 ~~~~~~~-~~---~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 166 (349)
...+..- .. .......++++|++++++++.. ++.|.+.|+.+++.+..+. ... +....|+
T Consensus 162 v~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~-v~g----~~~~~p~--------- 227 (426)
T 3c75_H 162 IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLD-VPD----CYHIFPA--------- 227 (426)
T ss_dssp EEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE-CCS----EEEEEEE---------
T ss_pred EEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEE-cCC----ceeeccC---------
Confidence 4444321 00 0123557899999999988764 5789999999999988877 221 1223331
Q ss_pred CCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeee----cCCCCCCccceeeeeccccEEEE
Q 018858 167 NGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISR----SKSTTKPLKGSQSTSKVNIRDAE 242 (349)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 242 (349)
....+++.+.||.+.+.++.+++.... +..........+.+.+++..++.
T Consensus 228 --------------------------g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~ 281 (426)
T 3c75_H 228 --------------------------SPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVW 281 (426)
T ss_dssp --------------------------ETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEE
T ss_pred --------------------------CCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEE
Confidence 224555566677777777754433211 11111111223456777666543
Q ss_pred eeeee-ecCce----eeeeeeeec-------C---CCcceEEEEEeeecCCccEEEEeeC----------CCeEEEEecC
Q 018858 243 MEILD-QSGGK----RLHLDYSVG-------G---HTAAASCVAFSMFGERGKYLISGGN----------DKLVKVWDCS 297 (349)
Q Consensus 243 ~~~~~-~~~~~----~~~~~~~~~-------~---h~~~i~~i~~~~~~~~~~~l~s~~~----------d~~i~vwd~~ 297 (349)
..... ..... .......+. . .......+.++ ++++.++.... ++.|.+.|..
T Consensus 282 ~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s---~dg~rlyVa~~~~~~gthk~~s~~VsVID~~ 358 (426)
T 3c75_H 282 PTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYH---RQSDRIYLLVDQRDEWKHKAASRFVVVLNAE 358 (426)
T ss_dssp EBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEE---GGGTEEEEEEEECCTTCTTSCEEEEEEEETT
T ss_pred EeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEc---CCCCEEEEEecccccccccCCCCEEEEEECC
Confidence 22100 00000 000111100 0 01111236788 78877666532 3579999999
Q ss_pred CCcceecccccceeeeccccccceEEEEeecCCCC-cEEEee-CCCeEEEeeCC
Q 018858 298 RFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESE-NLVVCD-TSKVVKVYSIS 349 (349)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~-~dg~i~iw~~~ 349 (349)
+.+ .+..+. -......++++| |++ +++++. .++.|.++|+.
T Consensus 359 T~k---------vv~~I~-vg~~P~gia~sp-Dg~~~lyv~n~~s~~VsVID~~ 401 (426)
T 3c75_H 359 TGE---------RINKIE-LGHEIDSINVSQ-DAEPLLYALSAGTQTLHIYDAA 401 (426)
T ss_dssp TCC---------EEEEEE-EEEEECEEEECC-SSSCEEEEEETTTTEEEEEETT
T ss_pred CCe---------EEEEEE-CCCCcCeEEEcc-CCCEEEEEEcCCCCeEEEEECC
Confidence 984 433332 223588899988 787 788887 69999999963
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.8e-13 Score=113.37 Aligned_cols=170 Identities=11% Similarity=0.047 Sum_probs=122.2
Q ss_pred eeeEEEEecCCCceEEEeCCCCcEEEEECCCCc-----------EEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 018858 17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKD-----------VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 85 (349)
++..+++++. ..++++|+.+ .+++|++++.+ ...... +.. |+.++| +++.|+++ .++.|++|
T Consensus 39 ~~nlLais~~-~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~-lp~-V~~l~f--d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 39 SLQNLDISNS-KSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKE-IPD-VIFVCF--HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp CCBCEEEETT-TTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEE-CTT-EEEEEE--ETTEEEEE-ESSEEEEE
T ss_pred cccEEEEcCC-CCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEee-CCC-eeEEEE--CCCEEEEE-cCCcEEEE
Confidence 6899999998 7788888887 46669865332 112233 556 999999 88999998 78999999
Q ss_pred EccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCC
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPE 165 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 165 (349)
|+.+......... +...+.++.+.+. .+++++.||.|.+||++++.... +...|++++|+|
T Consensus 112 dv~sl~~~~~~~~---~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-----~~~~Vs~v~WSp--------- 172 (388)
T 1xip_A 112 DLEELSEFRTVTS---FEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-----LAQNVTSFDVTN--------- 172 (388)
T ss_dssp ESSSTTCEEEEEE---CSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-----EEESEEEEEECS---------
T ss_pred EchhhhccCccce---eecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-----ccCCceEEEEcC---------
Confidence 9987543333333 3456777776654 38888999999999999776532 335799999999
Q ss_pred CCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCcee--eeecCC--------CCCCccceeeeec
Q 018858 166 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN--ISRSKS--------TTKPLKGSQSTSK 235 (349)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~--------~~~~~~~~~~~~~ 235 (349)
+| ++.|..||.+++|+....+. ...... .....+.++.|.+
T Consensus 173 ---------------------------kG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~ 223 (388)
T 1xip_A 173 ---------------------------SQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILS 223 (388)
T ss_dssp ---------------------------SE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESS
T ss_pred ---------------------------Cc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEec
Confidence 67 67889999999999887653 222211 1234566677777
Q ss_pred cccEEE
Q 018858 236 VNIRDA 241 (349)
Q Consensus 236 ~~~~~~ 241 (349)
++.+++
T Consensus 224 ~~~flv 229 (388)
T 1xip_A 224 PQDFLA 229 (388)
T ss_dssp SSEEEE
T ss_pred CCeEEE
Confidence 777666
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.55 E-value=3.2e-11 Score=100.65 Aligned_cols=246 Identities=9% Similarity=-0.043 Sum_probs=151.2
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeC----------CCCcEEEEECCCCcEEEEeecC-------CCCeEEEEE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSG----------EDGCICWFDLRSKDVQLVTDVG-------NGPVTSLCF 66 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~----------~dg~i~vwd~~~~~~~~~~~~~-------~~~v~~~~~ 66 (349)
+++.+.++.....+ .++++|+ +++++.+. .++.|.+||..+.+.+..+... ......++|
T Consensus 56 t~~~~~~i~~g~~p--~i~~spD-g~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~ 132 (373)
T 2mad_H 56 SGSILGHVNGGFLP--NPVAAHS-GSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNAN 132 (373)
T ss_pred CCeEEEEecCCCCC--CeEECCC-CCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEE
Confidence 44555566544444 8999999 78887775 3678999999998887776532 123457999
Q ss_pred ecCCCEEEEEeC--CCeEEEEEccCCCcccceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCceEeceec-
Q 018858 67 KSGNEDIIYVSS--GKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYKSLR- 142 (349)
Q Consensus 67 ~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~- 142 (349)
+|+|++|+++.. ++.|.++| .+++....+ +... .++.+.|++ +.+++.+.||.+.++|. +++......
T Consensus 133 spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~--i~~~----~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~ 204 (373)
T 2mad_H 133 TPNNADLLFFQFAAGPAVGLVV-QGGSSDDQL--LSSP----TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLV 204 (373)
T ss_pred CCCCCEEEEEecCCCCeEEEEE-CCCCEEeEE--cCCC----ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEec
Confidence 999999998874 47899999 876543220 2211 124455655 45667778999999999 776653221
Q ss_pred ----cccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceee-
Q 018858 143 ----AGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI- 217 (349)
Q Consensus 143 ----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~- 217 (349)
...........+.+ ++..++..+..+.+.+.|+......
T Consensus 205 ~~~~~~~~p~~~~~~~~~------------------------------------~~~~~~~~~~~~~v~vid~~~~~~~v 248 (373)
T 2mad_H 205 GAMLTAAQNLLTQPAQAN------------------------------------KSGRIVWPVYSGKILQADISAAGATN 248 (373)
T ss_pred cccccCCcceeecceeEe------------------------------------cCCEEEEEcCCceEEEEeccCCcceE
Confidence 01110111233444 3333333346788999998754221
Q ss_pred -eecCC---------CCCCccceeeeeccccEEEEeeee-----------eec--CceeeeeeeeecCCCcceEEEEEee
Q 018858 218 -SRSKS---------TTKPLKGSQSTSKVNIRDAEMEIL-----------DQS--GGKRLHLDYSVGGHTAAASCVAFSM 274 (349)
Q Consensus 218 -~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~--~~~~~~~~~~~~~h~~~i~~i~~~~ 274 (349)
..... ........++++++++.+.+.... ... .....+.+..+.. ......++|+
T Consensus 249 ~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s- 326 (373)
T 2mad_H 249 KAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVA- 326 (373)
T ss_pred eeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEEC-
Confidence 11100 011223347889998887753321 111 1122344444432 2357899999
Q ss_pred ecCCcc-EEEEee-CCCeEEEEecCCCc
Q 018858 275 FGERGK-YLISGG-NDKLVKVWDCSRFQ 300 (349)
Q Consensus 275 ~~~~~~-~l~s~~-~d~~i~vwd~~~~~ 300 (349)
|||+ +++++. .++.|.+||..+++
T Consensus 327 --~Dg~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 327 --QDGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred --CCCCeEEEEEcCCCCeEEEEECCCCC
Confidence 8999 777776 58999999999984
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.6e-13 Score=112.41 Aligned_cols=184 Identities=5% Similarity=-0.012 Sum_probs=127.1
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCc--------ccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEE
Q 018858 59 GPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPAS--------WRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKII 130 (349)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 130 (349)
.++..+++++....+++|+.++ +.+|+++.... ........ ... |+.++| ++++|+++ .++.|++|
T Consensus 38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~-lp~-V~~l~f--d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE-IPD-VIFVCF--HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE-CTT-EEEEEE--ETTEEEEE-ESSEEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEee-CCC-eeEEEE--CCCEEEEE-cCCcEEEE
Confidence 3688999999999999999875 66698764220 11111112 335 999999 88999998 88999999
Q ss_pred EcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEE
Q 018858 131 DIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVIN 210 (349)
Q Consensus 131 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d 210 (349)
|+++........ .+...+.++.+.+ . .+++++.||.|.+||
T Consensus 112 dv~sl~~~~~~~-~~~~~v~~i~~~~------------------------------------p--~~av~~~dG~L~v~d 152 (388)
T 1xip_A 112 DLEELSEFRTVT-SFEKPVFQLKNVN------------------------------------N--TLVILNSVNDLSALD 152 (388)
T ss_dssp ESSSTTCEEEEE-ECSSCEEEEEECS------------------------------------S--EEEEEETTSEEEEEE
T ss_pred EchhhhccCccc-eeecceeeEEecC------------------------------------C--CEEEEECCCCEEEEE
Confidence 998665444444 5566677776655 2 288889999999999
Q ss_pred ccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCe
Q 018858 211 IESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKL 290 (349)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~ 290 (349)
+..+. .. . +...|++++|+ |+| ++.|..||.
T Consensus 153 l~~~~----------------------------------------~~-~---~~~~Vs~v~WS---pkG--~~vg~~dg~ 183 (388)
T 1xip_A 153 LRTKS----------------------------------------TK-Q---LAQNVTSFDVT---NSQ--LAVLLKDRS 183 (388)
T ss_dssp TTTCC----------------------------------------EE-E---EEESEEEEEEC---SSE--EEEEETTSC
T ss_pred ccCCc----------------------------------------cc-c---ccCCceEEEEc---CCc--eEEEEcCCc
Confidence 98641 11 1 34579999999 888 677889999
Q ss_pred EEEEecCCCcc--eecccccceeeeccccccceEEEEeecCCCCcEEEe
Q 018858 291 VKVWDCSRFQG--VQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVC 337 (349)
Q Consensus 291 i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 337 (349)
+++|+...... .........+....+|...|.++.|.+ ++.++++-
T Consensus 184 i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~-~~~flv~y 231 (388)
T 1xip_A 184 FQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILS-PQDFLAVF 231 (388)
T ss_dssp EEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESS-SSEEEEEE
T ss_pred EEEEcCCCccccccceecCCcccccccCCCeeEEEEEEec-CCeEEEEE
Confidence 99998887632 110000000001124778999999987 66666664
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.4e-12 Score=115.46 Aligned_cols=197 Identities=8% Similarity=-0.056 Sum_probs=123.8
Q ss_pred CCeEEEEEecCCCEEEEEeCC-----CeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCc-------
Q 018858 59 GPVTSLCFKSGNEDIIYVSSG-----KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGD------- 126 (349)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~------- 126 (349)
..+..++|||||++|+.++.+ ..|++||+.+++.... .. +...+..++|+|| +.|+.+..++.
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~--~~--~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~ 237 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD--EL--KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQ 237 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE--EE--EEEESCCCEESTT-SEEEEEECCCC-------
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc--cC--CCceeccEEEECC-CEEEEEEecCcccccccc
Confidence 367889999999999887643 3699999998754321 11 1122357899999 98888776554
Q ss_pred -------EEEEEcCCce----EeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCc
Q 018858 127 -------VKIIDIRQHC----LYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK 195 (349)
Q Consensus 127 -------i~i~d~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (349)
|++|++.++. .+.... .+...+..+.|+| +|+
T Consensus 238 ~~~~~~~v~~~~lgt~~~~~~lv~~~~-~~~~~~~~~~~Sp------------------------------------DG~ 280 (741)
T 1yr2_A 238 ALNYNQTVWLHRLGTPQSADQPVFATP-ELPKRGHGASVSS------------------------------------DGR 280 (741)
T ss_dssp -CCCCCEEEEEETTSCGGGCEEEECCT-TCTTCEEEEEECT------------------------------------TSC
T ss_pred cCCCCCEEEEEECCCCchhCEEEeccC-CCCeEEEEEEECC------------------------------------CCC
Confidence 8899987654 222222 2223477888888 788
Q ss_pred EEEEEcCC-----CeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEE
Q 018858 196 ICVVAKGD-----GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCV 270 (349)
Q Consensus 196 ~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i 270 (349)
+|+..+.+ ..|.+||+.++.. .....+..+...+...
T Consensus 281 ~l~~~~~~~~~~~~~l~~~d~~~~~~--------------------------------------~~~~~l~~~~~~~~~~ 322 (741)
T 1yr2_A 281 WVVITSSEGTDPVNTVHVARVTNGKI--------------------------------------GPVTALIPDLKAQWDF 322 (741)
T ss_dssp EEEEEEECTTCSCCEEEEEEEETTEE--------------------------------------CCCEEEECSSSSCEEE
T ss_pred EEEEEEEccCCCcceEEEEECCCCCC--------------------------------------cccEEecCCCCceEEE
Confidence 88776644 3899999876310 0012233333333333
Q ss_pred EEeeecCCccEEEEeeC----CCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEe
Q 018858 271 AFSMFGERGKYLISGGN----DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVY 346 (349)
Q Consensus 271 ~~~~~~~~~~~l~s~~~----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 346 (349)
++ |+|+.|+..+. ++.|++||+.+.. . ........+...+..++++ ++.++++...|+..+||
T Consensus 323 -~~---~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~------~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~ 389 (741)
T 1yr2_A 323 -VD---GVGDQLWFVSGDGAPLKKIVRVDLSGST-P------RFDTVVPESKDNLESVGIA--GNRLFASYIHDAKSQVL 389 (741)
T ss_dssp -EE---EETTEEEEEECTTCTTCEEEEEECSSSS-C------EEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEEEEE
T ss_pred -Ee---ccCCEEEEEECCCCCCCEEEEEeCCCCc-c------ccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEEEEE
Confidence 34 57777776664 3559999987741 0 1222233344456667775 45577778888888877
Q ss_pred eC
Q 018858 347 SI 348 (349)
Q Consensus 347 ~~ 348 (349)
.+
T Consensus 390 ~~ 391 (741)
T 1yr2_A 390 AF 391 (741)
T ss_dssp EE
T ss_pred EE
Confidence 53
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.49 E-value=3.3e-11 Score=99.45 Aligned_cols=248 Identities=10% Similarity=-0.007 Sum_probs=152.2
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeC----------CCCcEEEEECCCCcEEEEeecCC-------CCeEEEEE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSG----------EDGCICWFDLRSKDVQLVTDVGN-------GPVTSLCF 66 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~----------~dg~i~vwd~~~~~~~~~~~~~~-------~~v~~~~~ 66 (349)
+++.+.++..-..+ . ++++|+ +++++.+. .++.|.+||..+++.+.++.... .....+++
T Consensus 68 t~~v~~~I~vG~~P-~-va~spD-G~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~ 144 (386)
T 3sjl_D 68 AGRVIGMIDGGFLP-N-PVVADD-GSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSL 144 (386)
T ss_dssp TTEEEEEEEECSSC-E-EEECTT-SSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEE
T ss_pred CCeEEEEEECCCCC-c-EEECCC-CCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEE
Confidence 45556666654455 3 999999 77777664 35789999999999988876432 24567999
Q ss_pred ecCCCEEEEEeC--CCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCC-ceEeceecc
Q 018858 67 KSGNEDIIYVSS--GKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ-HCLYKSLRA 143 (349)
Q Consensus 67 ~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~ 143 (349)
+|+|++++++.. ++.|.++|+.+++....+.. . + . ...+....+.+++.+.||.+.+.++.+ ++.......
T Consensus 145 spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v-~---g-~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~ 218 (386)
T 3sjl_D 145 TPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV-P---D-C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTE 218 (386)
T ss_dssp CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC-C---S-E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECC
T ss_pred cCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC-C---C-c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecc
Confidence 999999998874 68999999998754444322 1 1 1 122322346677778889988888875 554221110
Q ss_pred ---cccccee-EEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeee-
Q 018858 144 ---GHSSICS-SVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS- 218 (349)
Q Consensus 144 ---~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~- 218 (349)
....++. ...|.+ ++|++++ .+.+|.|.+.|+.+.....
T Consensus 219 ~~~~~~~~~~~~~~~~~-----------------------------------~dG~~~~-vs~~g~V~v~d~~~~~~~v~ 262 (386)
T 3sjl_D 219 VFHPEDEFLINHPAYSQ-----------------------------------KAGRLVW-PTYTGKIHQIDLSSGDAKFL 262 (386)
T ss_dssp CCSCTTSCBCSCCEEET-----------------------------------TTTEEEE-EBTTSEEEEEECTTSSCEEC
T ss_pred eeccccccccccceeEc-----------------------------------CCCcEEE-EeCCCEEEEEECCCCcceee
Confidence 0001111 123321 1666555 4558999999997653211
Q ss_pred -ec---------CCCCCCccceeeeeccccEEEEeeeee-----------ec--CceeeeeeeeecCCCcceEEEEEeee
Q 018858 219 -RS---------KSTTKPLKGSQSTSKVNIRDAEMEILD-----------QS--GGKRLHLDYSVGGHTAAASCVAFSMF 275 (349)
Q Consensus 219 -~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~--~~~~~~~~~~~~~h~~~i~~i~~~~~ 275 (349)
.. ..........++++++++.+.+....+ .. .....+.+..+.- ...+..|.++
T Consensus 263 ~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~~lavs-- 339 (386)
T 3sjl_D 263 PAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVS-- 339 (386)
T ss_dssp CCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEEC--
T ss_pred cceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-CCCcceEEEC--
Confidence 11 111223445688899998887643211 00 1112223333321 2367899999
Q ss_pred cCCcc-EEEEe-eCCCeEEEEecCCCc
Q 018858 276 GERGK-YLISG-GNDKLVKVWDCSRFQ 300 (349)
Q Consensus 276 ~~~~~-~l~s~-~~d~~i~vwd~~~~~ 300 (349)
+|++ +|++. ..++.|.++|..+++
T Consensus 340 -~D~~~~ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 340 -QDEKPLLYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp -SSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred -CCCCeEEEEEcCCCCeEEEEECCCCc
Confidence 8986 66654 568999999999984
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.47 E-value=5.7e-12 Score=104.38 Aligned_cols=276 Identities=8% Similarity=0.001 Sum_probs=147.2
Q ss_pred CCeeeeCCceeeeEEEEecCCCceEEEeC--CCCcEEEEECCCCcEEEEee-------cCCCCeEEEEEecCCCEEEEEe
Q 018858 7 KPRRLRGHKATATCCIASRDRPGFVASSG--EDGCICWFDLRSKDVQLVTD-------VGNGPVTSLCFKSGNEDIIYVS 77 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~t~~--~dg~i~vwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~ 77 (349)
.++.+.........++++|+ ++++++.. .++.++||.+.+++. ..+. .+-..+..++++++++++++-.
T Consensus 8 ~~~~v~~~~~~p~~va~~~~-g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~ 85 (343)
T 2qe8_A 8 RLEVVAELSLAPGNITLTPD-GRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDN 85 (343)
T ss_dssp CCEEEEEESSCEEEEEECTT-SCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEEC
T ss_pred eeEEEEEcCCCcceEEECCC-CCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcC
Confidence 34444333367889999998 78888853 234355565545543 3222 2446789999999987655543
Q ss_pred C-----CCeEEEEEccCCCcccceeec---cCcccceEEEEEccCCCEE-EEEc---CCCcEEEEEcCCceEeceecccc
Q 018858 78 S-----GKEVKSFDVHMPASWRPLESY---NYNKEEINQIVCNPKSSFL-ACAD---DGGDVKIIDIRQHCLYKSLRAGH 145 (349)
Q Consensus 78 ~-----dg~i~iwd~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l-~~~~---~dg~i~i~d~~~~~~~~~~~~~~ 145 (349)
. ++.|.+||+.+++....+..- ..+...+..+++++++..+ ++.. .++.|.+||+.+++..+.+. .|
T Consensus 86 g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~-~~ 164 (343)
T 2qe8_A 86 GNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQ-GY 164 (343)
T ss_dssp HHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECT-TC
T ss_pred CCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEec-CC
Confidence 3 578999999876533333211 1122356889999865444 5544 57889999999887766554 32
Q ss_pred cccee-EEEEccCCCCCCCCCCCCCCccc-cCCceeEEeecCcccccCCCCcEEEEEcCCC-eEEEEEccCceeeeecCC
Q 018858 146 SSICS-SVQFIPWKPWEGLPENNGNAGQC-YNPAFVHAIAIPDADMLDKTNKICVVAKGDG-VVDVINIESELNISRSKS 222 (349)
Q Consensus 146 ~~~v~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~ 222 (349)
..... ...+.+++......+ ..+.. .-......++++| +++.|+++...+ .+..++.....
T Consensus 165 ~~~~~~~~~~~~~g~~~~~~~---~~g~~~~~~~~~~gia~s~------dg~~ly~~~~~~~~l~~~~~~~~~------- 228 (343)
T 2qe8_A 165 PGIAPEDIDLVIDGVPVQIGQ---PDGTVIRPHLGVNGIVLDA------ENEWLYLSPMHSTSMYRIKSADLS------- 228 (343)
T ss_dssp TTTSCCSCCCEETTEECBEEC---TTSCEECCCCCEEEEEECT------TSCEEEEEESSCSEEEEEEHHHHT-------
T ss_pred CcccccccceeECCEEEEecc---CCCceeceecccceeEecc------CCCEEEEEeCCCCeEEEEEHHHhc-------
Confidence 21100 022222111000000 00000 0011234555555 555555554433 33333221000
Q ss_pred CCCCccceeeeeccccEEEEeeeeeecCceeeeeee--eecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCc
Q 018858 223 TTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDY--SVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ 300 (349)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 300 (349)
+.... ..+... ...++.+....++++ ++|+++++...++.|.+||..++
T Consensus 229 ------------------------~~~~~-~~~~~~~~~~~g~~g~pdgia~d---~~G~l~va~~~~~~V~~~d~~~G- 279 (343)
T 2qe8_A 229 ------------------------NLQLT-DAELGSKIERYSEKPICDGISID---KDHNIYVGDLAHSAIGVITSADR- 279 (343)
T ss_dssp ------------------------CTTCC-HHHHHTTCEEEEECCSCSCEEEC---TTCCEEEEEGGGTEEEEEETTTT-
T ss_pred ------------------------CCCCC-hhhhhcceEecccCCCCceEEEC---CCCCEEEEccCCCeEEEEECCCC-
Confidence 00000 000000 111233456678899 89999999989999999998444
Q ss_pred ceecccccceeeecc-ccccceEEEEeecCCCCcEEEeeC
Q 018858 301 GVQTSINNDLLIKNI-NLNKKVNWLCTTPTESENLVVCDT 339 (349)
Q Consensus 301 ~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~ 339 (349)
....... .+...+.++++.+ +++++++.+.
T Consensus 280 --------~~~~~~~~~~~~~p~~va~~~-~g~l~v~~~~ 310 (343)
T 2qe8_A 280 --------AYKLLVTDEKLSWTDSFNFGS-DGYLYFDCNQ 310 (343)
T ss_dssp --------EEEEEEECGGGSCEEEEEECT-TSCEEEEECC
T ss_pred --------CEEEEEECCceecCCeeEECC-CCcEEEEeCc
Confidence 2211111 1244688999987 6776666653
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.47 E-value=6.7e-10 Score=89.94 Aligned_cols=236 Identities=6% Similarity=-0.055 Sum_probs=152.2
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCce
Q 018858 57 GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC 136 (349)
Q Consensus 57 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 136 (349)
....+.++++.++++..++...++.|.+||.. ++. ..+ ........+..+++.+++..+++...++.|..||.. ++
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~-~~~-~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~ 93 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRI-KEF-EVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG 93 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEE-ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cce-EEE-ECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC
Confidence 45678899999999877777678999999977 432 222 122233568899999999888877777889999987 54
Q ss_pred Eeceec-cccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCce
Q 018858 137 LYKSLR-AGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL 215 (349)
Q Consensus 137 ~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 215 (349)
.. .+. ......+.++++.+ +++++++...++.|..+|.. ++
T Consensus 94 ~~-~~~~~~~~~~~~~i~~~~------------------------------------~g~l~v~~~~~~~i~~~~~~-g~ 135 (300)
T 2qc5_A 94 FT-EYPLPQPDSGPYGITEGL------------------------------------NGDIWFTQLNGDRIGKLTAD-GT 135 (300)
T ss_dssp EE-EEECSSTTCCEEEEEECS------------------------------------TTCEEEEETTTTEEEEECTT-SC
T ss_pred eE-EecCCCCCCCCccceECC------------------------------------CCCEEEEccCCCeEEEECCC-CC
Confidence 42 222 02335677788877 78877777778899999987 44
Q ss_pred eeeecCCCCCCccceeeeeccccEEEEeee---eeecC-ceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeE
Q 018858 216 NISRSKSTTKPLKGSQSTSKVNIRDAEMEI---LDQSG-GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLV 291 (349)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i 291 (349)
...............+++.++|+..++... ..... ...... .....+...+..++++ +++++.++....+.|
T Consensus 136 ~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~-~~~~~~~~~~~~i~~d---~~g~l~v~~~~~~~i 211 (300)
T 2qc5_A 136 IYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNTGKLEE-YPLPTNAAAPVGITSG---NDGALWFVEIMGNKI 211 (300)
T ss_dssp EEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEE-EECSSTTCCEEEEEEC---TTSSEEEEETTTTEE
T ss_pred EEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECCCCcEEE-eeCCCCCCCcceEEEC---CCCCEEEEccCCCEE
Confidence 332222223345678899999986654211 11111 111111 1222334568899998 888887777777889
Q ss_pred EEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 292 KVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 292 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.+||. ++. ............+.++++.+ ++++.++...++.|..|+.
T Consensus 212 ~~~~~-~g~--------~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 212 GRITT-TGE--------ISEYDIPTPNARPHAITAGK-NSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp EEECT-TCC--------EEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECT
T ss_pred EEEcC-CCc--------EEEEECCCCCCCceEEEECC-CCCEEEeccCCCeEEEECC
Confidence 99998 331 11111223445678899977 6765555556688888874
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.46 E-value=9.2e-11 Score=98.56 Aligned_cols=246 Identities=10% Similarity=-0.002 Sum_probs=153.4
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeC----------CCCcEEEEECCCCcEEEEeecC-------CCCeEEEEE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSG----------EDGCICWFDLRSKDVQLVTDVG-------NGPVTSLCF 66 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~----------~dg~i~vwd~~~~~~~~~~~~~-------~~~v~~~~~ 66 (349)
+++.+.++..-..+ .++++|+ +++|+.+. .++.|.++|..+++.+..+... ......+++
T Consensus 108 t~~vv~~I~vG~~P--gia~SpD-gk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~ 184 (426)
T 3c75_H 108 TGRILGMTDGGFLP--HPVAAED-GSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNAL 184 (426)
T ss_dssp TTEEEEEEEECSSC--EEEECTT-SSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEE
T ss_pred CCEEEEEEECCCCC--ceEECCC-CCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEE
Confidence 45566666644455 7999999 77777665 3678999999999998877642 133567899
Q ss_pred ecCCCEEEEEeC--CCeEEEEEccCCCcccceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCceEec----
Q 018858 67 KSGNEDIIYVSS--GKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYK---- 139 (349)
Q Consensus 67 ~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~---- 139 (349)
+|+|++++++.. ++.|.+.|+.+.+....+..- . . ....|++ ..+++.+.||.+.+.++.+++...
T Consensus 185 spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~----g-~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~ 257 (426)
T 3c75_H 185 TPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVP----D-C--YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTE 257 (426)
T ss_dssp CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC----S-E--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECC
T ss_pred cCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcC----C-c--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeee
Confidence 999999999874 578999999986544333321 1 1 2333433 555666677888777875554432
Q ss_pred eeccccccc-eeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeee
Q 018858 140 SLRAGHSSI-CSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNIS 218 (349)
Q Consensus 140 ~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 218 (349)
.+. ....+ ...+.|.+ ++..++.....+.+.+.|........
T Consensus 258 ~~~-v~~~p~~~~~~~~~------------------------------------dg~~~~~~s~~g~V~ViD~~~~~~~v 300 (426)
T 3c75_H 258 VFH-TEDELLINHPAFSL------------------------------------RSGRLVWPTYTGKIFQADLTAEGATF 300 (426)
T ss_dssp CCS-CTTSCBCSCCEECT------------------------------------TTCEEEEEBTTSEEEEEEECSSCEEE
T ss_pred eec-cCCCceeeEeeecC------------------------------------CCCEEEEEeCCCcEEEEeccCCceEE
Confidence 111 11111 11234455 56666666678899999997543221
Q ss_pred ecC----C-------CCCCccceeeeeccccEEEEeeee-----------eec--CceeeeeeeeecCCCcceEEEEEee
Q 018858 219 RSK----S-------TTKPLKGSQSTSKVNIRDAEMEIL-----------DQS--GGKRLHLDYSVGGHTAAASCVAFSM 274 (349)
Q Consensus 219 ~~~----~-------~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~--~~~~~~~~~~~~~h~~~i~~i~~~~ 274 (349)
... . ........++++++++.+.+.... ... .....+.+..+.. ......+.|+
T Consensus 301 ~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v-g~~P~gia~s- 378 (426)
T 3c75_H 301 RAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL-GHEIDSINVS- 378 (426)
T ss_dssp CCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEEC-
T ss_pred eeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC-CCCcCeEEEc-
Confidence 110 0 011223347999999887754221 111 1112333334432 1247889999
Q ss_pred ecCCcc-EEEEee-CCCeEEEEecCCCc
Q 018858 275 FGERGK-YLISGG-NDKLVKVWDCSRFQ 300 (349)
Q Consensus 275 ~~~~~~-~l~s~~-~d~~i~vwd~~~~~ 300 (349)
||++ ++++.. .++.|.|+|+.+.+
T Consensus 379 --pDg~~~lyv~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 379 --QDAEPLLYALSAGTQTLHIYDAATGE 404 (426)
T ss_dssp --CSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred --cCCCEEEEEEcCCCCeEEEEECCCCC
Confidence 8998 888877 58999999999983
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.42 E-value=1.8e-10 Score=94.06 Aligned_cols=199 Identities=12% Similarity=0.118 Sum_probs=129.0
Q ss_pred CceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEE-eec----CCCCeEEEEEecCCCEEEEEeCC---------
Q 018858 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLV-TDV----GNGPVTSLCFKSGNEDIIYVSSG--------- 79 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~l~~~~~d--------- 79 (349)
+...+.++++++++++++++.. .+.|.+||.+ ++.... ... ....+..++++++|+..++...+
T Consensus 69 ~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~ 146 (314)
T 1pjx_A 69 YGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR 146 (314)
T ss_dssp EECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred CCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence 4466889999987345444444 4479999988 665433 221 12347899999999877766544
Q ss_pred ------CeEEEEEccCCCcccceeeccCcccceEEEEEc----cCCCEEE-EEcCCCcEEEEEcC-CceE-----eceec
Q 018858 80 ------KEVKSFDVHMPASWRPLESYNYNKEEINQIVCN----PKSSFLA-CADDGGDVKIIDIR-QHCL-----YKSLR 142 (349)
Q Consensus 80 ------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~-~~~~dg~i~i~d~~-~~~~-----~~~~~ 142 (349)
+.|..++.. ++. ..+. .+......++++ |+++.++ +...++.|.+||+. +++. ...+.
T Consensus 147 ~~~~~~~~l~~~~~~-g~~-~~~~---~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~ 221 (314)
T 1pjx_A 147 SMQEKFGSIYCFTTD-GQM-IQVD---TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIP 221 (314)
T ss_dssp TTSSSCEEEEEECTT-SCE-EEEE---EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECC
T ss_pred cccCCCCeEEEECCC-CCE-EEec---cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECC
Confidence 466666654 322 1111 122446788999 9986654 44567899999986 4432 22222
Q ss_pred cccc-cceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecC
Q 018858 143 AGHS-SICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK 221 (349)
Q Consensus 143 ~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 221 (349)
.+. ..+..+++++ +++++++...++.|.+||.+++
T Consensus 222 -~~~~~~p~~i~~d~------------------------------------~G~l~v~~~~~~~i~~~d~~~g------- 257 (314)
T 1pjx_A 222 -GTHEGGADGMDFDE------------------------------------DNNLLVANWGSSHIEVFGPDGG------- 257 (314)
T ss_dssp -CCSSCEEEEEEEBT------------------------------------TCCEEEEEETTTEEEEECTTCB-------
T ss_pred -CCCCCCCCceEECC------------------------------------CCCEEEEEcCCCEEEEEcCCCC-------
Confidence 222 4566777777 7888887777889999998743
Q ss_pred CCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEE-EEeeCCCeEEEEecCCC
Q 018858 222 STTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYL-ISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l-~s~~~d~~i~vwd~~~~ 299 (349)
+....+..+...+.+++++ ++++.| ++...++.|..|++...
T Consensus 258 ---------------------------------~~~~~~~~~~~~~~~i~~~---~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 258 ---------------------------------QPKMRIRCPFEKPSNLHFK---PQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp ---------------------------------SCSEEEECSSSCEEEEEEC---TTSSEEEEEETTTTEEEEEECSSC
T ss_pred ---------------------------------cEeEEEeCCCCCceeEEEC---CCCCEEEEEeCCCCeEEEEeCCCC
Confidence 1222233344678999998 899855 45556789999998753
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.3e-10 Score=94.30 Aligned_cols=240 Identities=13% Similarity=0.054 Sum_probs=144.8
Q ss_pred cCCCceEEEeCCCCcEEEEECCCC----cEEEEee-------cCCCCeEEEEEecCCCEEEEEeCC------CeEEEEEc
Q 018858 25 RDRPGFVASSGEDGCICWFDLRSK----DVQLVTD-------VGNGPVTSLCFKSGNEDIIYVSSG------KEVKSFDV 87 (349)
Q Consensus 25 ~~~~~~l~t~~~dg~i~vwd~~~~----~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~ 87 (349)
++...+++++-.++.|+++|+.+. +...+++ ........+..+|+| .++++..+ +.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 663344556777899999998754 5556663 112245667888999 66665544 78999999
Q ss_pred cCCCcccceeeccCcccceEEEEEccCCCEEEEEc-------------------CCCcEEEEEcCCceEeceeccc-ccc
Q 018858 88 HMPASWRPLESYNYNKEEINQIVCNPKSSFLACAD-------------------DGGDVKIIDIRQHCLYKSLRAG-HSS 147 (349)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------------------~dg~i~i~d~~~~~~~~~~~~~-~~~ 147 (349)
++.+.......-......-..+-|+|+++.+++.. ....|.+||+.+++.+.++..+ ...
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~ 251 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR 251 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence 87654433332111112244678899999888874 3678999999998888887732 223
Q ss_pred ceeEEEE--ccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEc------CCCeEEEEEccCceeeee
Q 018858 148 ICSSVQF--IPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK------GDGVVDVINIESELNISR 219 (349)
Q Consensus 148 ~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~ 219 (349)
....+.| +| +++++.+++ .++.|.+|....+.....
T Consensus 252 ~P~~i~f~~~P------------------------------------dg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~ 295 (462)
T 2ece_A 252 MALELRPLHDP------------------------------------TKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAE 295 (462)
T ss_dssp EEEEEEECSST------------------------------------TCCEEEEEEEEETTTCCEEEEEEEEETTEEEEE
T ss_pred ccceeEeeECC------------------------------------CCCEEEEEEeeeccCCCceEEEEEecCCceeEE
Confidence 4455555 77 777777666 456888877654311000
Q ss_pred cCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeee-------cCCCcceEEEEEeeecCCccEEEEee-CCCeE
Q 018858 220 SKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSV-------GGHTAAASCVAFSMFGERGKYLISGG-NDKLV 291 (349)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~h~~~i~~i~~~~~~~~~~~l~s~~-~d~~i 291 (349)
.. .+ .........+ .+-......|.++ +||++|+++. ..+.|
T Consensus 296 ~v------------------------Id---i~~~~v~~~lp~~~~~f~~~~~~pa~I~lS---~DGrfLYVSnrg~d~V 345 (462)
T 2ece_A 296 KV------------------------IE---IPAEPLEGNLPEILKPFKAVPPLVTDIDIS---LDDKFLYLSLWGIGEV 345 (462)
T ss_dssp EE------------------------EE---ECCEECCSSCCGGGGGGTEECCCCCCEEEC---TTSCEEEEEETTTTEE
T ss_pred EE------------------------Ee---CCCccccccccccccccccCCCceeEEEEC---CCCCEEEEEeCCCCEE
Confidence 00 00 0000000011 0102346789999 9999998776 46899
Q ss_pred EEEecCCCcceecccccceeeec-cc-------c------ccceEEEEeecCCCCcEEEee
Q 018858 292 KVWDCSRFQGVQTSINNDLLIKN-IN-------L------NKKVNWLCTTPTESENLVVCD 338 (349)
Q Consensus 292 ~vwd~~~~~~~~~~~~~~~~~~~-~~-------~------~~~v~~~~~~~~~~~~l~~~~ 338 (349)
.+||+...... +++... .+ | .+....++++| ||++|+++.
T Consensus 346 avfdV~d~~~~------~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp-DGk~LyVaN 399 (462)
T 2ece_A 346 RQYDISNPFKP------VLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR-DGRRVYVTN 399 (462)
T ss_dssp EEEECSSTTSC------EEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT-TSSEEEEEC
T ss_pred EEEEecCCCCc------EEEEEEEeCCeeccccccccccCCCCCCEEEEcC-CCCEEEEEc
Confidence 99998643211 111111 11 1 11357788887 888888887
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.36 E-value=7.3e-10 Score=93.76 Aligned_cols=209 Identities=9% Similarity=-0.011 Sum_probs=126.7
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCC--cEEEEEcCCce
Q 018858 59 GPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGG--DVKIIDIRQHC 136 (349)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~ 136 (349)
.....++|+++++.+++...++.|++||..++........ ..... ++|+++++.|+++..++ .|.+++...+.
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~----~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~ 205 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG----FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGW 205 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET----CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc----CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCc
Confidence 3578899999999777777779999999986533222111 12334 89999999888888765 78888877554
Q ss_pred Eecee---ccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC
Q 018858 137 LYKSL---RAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 213 (349)
Q Consensus 137 ~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 213 (349)
....+ .......+.+++++| ++..|+++..++.|+.||..+
T Consensus 206 ~~~~~g~~~~~~~~~p~~iav~p------------------------------------~~g~lyv~d~~~~I~~~d~~~ 249 (409)
T 3hrp_A 206 APTRIGQLGSTFSGKIGAVALDE------------------------------------TEEWLYFVDSNKNFGRFNVKT 249 (409)
T ss_dssp CEEEEEECCTTSCSCCCBCEECT------------------------------------TSSEEEEECTTCEEEEEETTT
T ss_pred eeEEeeeccchhcCCcEEEEEeC------------------------------------CCCeEEEEECCCcEEEEECCC
Confidence 33333 101345567788887 444455577788999999886
Q ss_pred ceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcc--eEEEEEeeecC-CccEEEEeeCCCe
Q 018858 214 ELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAA--ASCVAFSMFGE-RGKYLISGGNDKL 290 (349)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--i~~i~~~~~~~-~~~~l~s~~~d~~ 290 (349)
+..... ... ...++... ...++|+ | ++.++++-..++.
T Consensus 250 ~~~~~~-----------------------------------~~~-~~~g~~~~~P~~~ia~~---p~~g~lyv~d~~~~~ 290 (409)
T 3hrp_A 250 QEVTLI-----------------------------------KQL-ELSGSLGTNPGPYLIYY---FVDSNFYMSDQNLSS 290 (409)
T ss_dssp CCEEEE-----------------------------------EEC-CCCSCCCCSSCCEEEEE---TTTTEEEEEETTTTE
T ss_pred CCEEEE-----------------------------------ecc-cccCCCCCCccccEEEe---CCCCEEEEEeCCCCE
Confidence 421000 000 01111111 1289999 7 4666677677899
Q ss_pred EEEEecCCCcceecccc--ccee--eeccccccceEEEEeecCCCCcEEEee-CCCeEEEeeC
Q 018858 291 VKVWDCSRFQGVQTSIN--NDLL--IKNINLNKKVNWLCTTPTESENLVVCD-TSKVVKVYSI 348 (349)
Q Consensus 291 i~vwd~~~~~~~~~~~~--~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iw~~ 348 (349)
|+.|+............ .... ......-.....+++.+ +++++++-. .++.|+.|++
T Consensus 291 I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~-dG~lyvad~~~~~~I~~~~~ 352 (409)
T 3hrp_A 291 VYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDE-DGNFYIVDGFKGYCLRKLDI 352 (409)
T ss_dssp EEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECT-TCCEEEEETTTTCEEEEEET
T ss_pred EEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeC-CCCEEEEeCCCCCEEEEEEC
Confidence 99999775311000000 0000 00000113478899987 777666656 7889999984
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=8.6e-10 Score=91.17 Aligned_cols=255 Identities=8% Similarity=-0.085 Sum_probs=151.5
Q ss_pred eEEEeCCCC----cEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEe----------CCCeEEEEEccCCCcccc
Q 018858 30 FVASSGEDG----CICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVS----------SGKEVKSFDVHMPASWRP 95 (349)
Q Consensus 30 ~l~t~~~dg----~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~ 95 (349)
.+++-..++ +|.+.|..+++.+.++.....+ .+.++|++++++++. .++.|.+||..+++....
T Consensus 34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~ 111 (368)
T 1mda_H 34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD 111 (368)
T ss_dssp EEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEE
T ss_pred EEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEE
Confidence 344444444 7889999999999999876666 799999999999886 368899999998765555
Q ss_pred eeeccCc----ccceEEEEEccCCCEEEEEcC--CCcEEE--EEcCCceEeceeccccccceeEEEEccCCCCCCCCCCC
Q 018858 96 LESYNYN----KEEINQIVCNPKSSFLACADD--GGDVKI--IDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENN 167 (349)
Q Consensus 96 ~~~~~~~----~~~v~~~~~~~~~~~l~~~~~--dg~i~i--~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 167 (349)
+..-... ......++++||+++++++.. +..+.+ +|+.+ +..+. ... . +.+.|+
T Consensus 112 I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~-v~~--~--~~~~p~---------- 173 (368)
T 1mda_H 112 IELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTK-SAS--C--FHIHPG---------- 173 (368)
T ss_dssp EEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEE-CSS--C--CCCEEE----------
T ss_pred EECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEE-CCC--c--eEEccC----------
Confidence 4321000 123567899999999988864 456888 88876 34443 111 1 112331
Q ss_pred CCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC-----ceeeeec---CCCCCCccceeeeeccccE
Q 018858 168 GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES-----ELNISRS---KSTTKPLKGSQSTSKVNIR 239 (349)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~---~~~~~~~~~~~~~~~~~~~ 239 (349)
....+++.+.||.+.+.|+.+ ++..... ......+. + .+++..
T Consensus 174 -------------------------g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~ 224 (368)
T 1mda_H 174 -------------------------AAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGM 224 (368)
T ss_dssp -------------------------ETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTE
T ss_pred -------------------------CCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCE
Confidence 234555667788888888876 3322110 00001111 3 555544
Q ss_pred EEEeeeeeecCc-e-----eeeeeeeecC-------CC---cceEEEEEeeecCCccEEEEeeC---------CCeEEEE
Q 018858 240 DAEMEILDQSGG-K-----RLHLDYSVGG-------HT---AAASCVAFSMFGERGKYLISGGN---------DKLVKVW 294 (349)
Q Consensus 240 ~~~~~~~~~~~~-~-----~~~~~~~~~~-------h~---~~i~~i~~~~~~~~~~~l~s~~~---------d~~i~vw 294 (349)
++.... .... . .......+.- +. .....+.++ ++++.++.+.. ++.+.++
T Consensus 225 ~~~vs~--~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s---~dg~~lyV~~~~~~~~~~~~~~~~~Vi 299 (368)
T 1mda_H 225 LVWAVA--SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKL---KNTDGIMILTVEHSRSCLAAAENTSSV 299 (368)
T ss_dssp EEECBS--SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEE---TTTTEEEEEEEECSSCTTSCEEEEEEE
T ss_pred EEEEcC--CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEc---CCCCEEEEEeccccCcccccCCCEEEE
Confidence 433222 1110 0 0011111110 00 111126788 88887776532 2356699
Q ss_pred ecCCCcceecccccceeeeccccccceEEEEeecCCCC-cEEEee-CCCeEEEeeCC
Q 018858 295 DCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESE-NLVVCD-TSKVVKVYSIS 349 (349)
Q Consensus 295 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~-~dg~i~iw~~~ 349 (349)
|+.+. +.+..+.. ......+++++ |++ .+++.. .++.|.++|+.
T Consensus 300 D~~t~---------~vv~~i~v-g~~p~gi~~s~-Dg~~l~va~~~~~~~VsVID~~ 345 (368)
T 1mda_H 300 TASVG---------QTSGPISN-GHDSDAIIAAQ-DGASDNYANSAGTEVLDIYDAA 345 (368)
T ss_dssp ESSSC---------CEEECCEE-EEEECEEEECC-SSSCEEEEEETTTTEEEEEESS
T ss_pred ECCCC---------eEEEEEEC-CCCcceEEECC-CCCEEEEEccCCCCeEEEEECC
Confidence 99997 34433322 23688899988 776 455556 59999999973
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=7.5e-13 Score=110.63 Aligned_cols=141 Identities=9% Similarity=0.081 Sum_probs=77.8
Q ss_pred CceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceE
Q 018858 28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEIN 107 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~ 107 (349)
+..+++++.||.|+.||..+++.++.+.. .++.+..+..++..+++++.|+.|+.||.++++......... ...+.
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~--~~~~~ 84 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTI--PELVQ 84 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCH--HHHHT
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccC--ccccc
Confidence 57889999999999999999999988876 455555556677778888899999999998875432221100 01110
Q ss_pred -EEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCc
Q 018858 108 -QIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPD 186 (349)
Q Consensus 108 -~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (349)
...+. .+..+++++.++.|+.||.++++.+..+. .+. ...++|
T Consensus 85 ~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~-~~~----~~~~~p------------------------------ 128 (369)
T 2hz6_A 85 ASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLS-SAF----ADSLSP------------------------------ 128 (369)
T ss_dssp TCSCC------CCCCEEEEEEEEECCC-----------------------------------------------------
T ss_pred cCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEec-CCC----cccccc------------------------------
Confidence 00111 34567788889999999999999887776 332 123444
Q ss_pred ccccCCCCcEEEEEcCCCeEEEEEccCc
Q 018858 187 ADMLDKTNKICVVAKGDGVVDVINIESE 214 (349)
Q Consensus 187 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 214 (349)
++..+++++.++.|+.||.+++
T Consensus 129 ------~~~~v~~~~~dg~v~a~d~~tG 150 (369)
T 2hz6_A 129 ------STSLLYLGRTEYTITMYDTKTR 150 (369)
T ss_dssp ----------EEEEEEEEEEECCCSSSS
T ss_pred ------cCCEEEEEecCCEEEEEECCCC
Confidence 5677888899999999999875
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=3e-10 Score=93.90 Aligned_cols=238 Identities=7% Similarity=-0.047 Sum_probs=146.2
Q ss_pred ccCCCCeeeeCCceeeeEEEEecCCCceEEEeC----------CCCcEEEEECCCCcEEEEeecCC-------CCeEEEE
Q 018858 3 DAEAKPRRLRGHKATATCCIASRDRPGFVASSG----------EDGCICWFDLRSKDVQLVTDVGN-------GPVTSLC 65 (349)
Q Consensus 3 ~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~----------~dg~i~vwd~~~~~~~~~~~~~~-------~~v~~~~ 65 (349)
.+++.+.++..-..+ .+.++|+ +++++.+. .++.|.+||..+++.+.++..+. .....++
T Consensus 54 ~t~~v~~~i~vG~~P--~i~~spD-g~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia 130 (368)
T 1mda_H 54 GCGVTLGHSLGAFLS--LAVAGHS-GSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIG 130 (368)
T ss_dssp TTTEEEEEEEECTTC--EEEECTT-SSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEE
T ss_pred CCCeEEEEEeCCCCC--ceEECCC-CCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEE
Confidence 356677777655556 6999999 77777764 36889999999999998887541 2356799
Q ss_pred EecCCCEEEEEeC--CCeEEE--EEccCCCcccceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCC-----c
Q 018858 66 FKSGNEDIIYVSS--GKEVKS--FDVHMPASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQ-----H 135 (349)
Q Consensus 66 ~~~~~~~l~~~~~--dg~i~i--wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~-----~ 135 (349)
++|+|++++++.. +..|.+ +|..+ ...+.. . . . +.+.|++ ..+++.+.|+.+.+.|+.+ +
T Consensus 131 ~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v-~---~-~--~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~ 200 (368)
T 1mda_H 131 NCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKS-A---S-C--FHIHPGAAATHYLGSCPASLAASDLAAAPAAAG 200 (368)
T ss_dssp ECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEEC-S---S-C--CCCEEEETTEEECCCCTTSCEEEECCSSCCCCE
T ss_pred EcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEEC-C---C-c--eEEccCCCeEEEEEcCCCCEEEEECccccccCC
Confidence 9999999999875 357888 88875 222221 1 1 1 1233444 4455666788888888876 4
Q ss_pred eEec----eeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEc
Q 018858 136 CLYK----SLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINI 211 (349)
Q Consensus 136 ~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 211 (349)
+... .+. -...+. . .+ ++..++..+. +.+.+.|.
T Consensus 201 ~v~~~~t~~i~-vg~~P~---~-~~------------------------------------~~~~~~~vs~-~~V~viD~ 238 (368)
T 1mda_H 201 IVGAQCTGAQN-CSSQAA---Q-AN------------------------------------YPGMLVWAVA-SSILQGDI 238 (368)
T ss_dssp ECCCCSCTTSC-BCSCCE---E-ET------------------------------------TTTEEEECBS-SCCEEEEC
T ss_pred eEEEEeeeeee-CCCCcc---c-cc------------------------------------cCCEEEEEcC-CEEEEEEC
Confidence 4321 111 111111 2 33 3445555555 89999998
Q ss_pred cCce--eeeecCCC---------CCCccceeeeeccccEEEEeee---------eeec---CceeeeeeeeecCCCcceE
Q 018858 212 ESEL--NISRSKST---------TKPLKGSQSTSKVNIRDAEMEI---------LDQS---GGKRLHLDYSVGGHTAAAS 268 (349)
Q Consensus 212 ~~~~--~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~---------~~~~---~~~~~~~~~~~~~h~~~i~ 268 (349)
.+.. ........ .......++++|+++.+.+... .+.. .....+.+..+... ....
T Consensus 239 ~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg-~~p~ 317 (368)
T 1mda_H 239 PAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG-HDSD 317 (368)
T ss_dssp CSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE-EEEC
T ss_pred CCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC-CCcc
Confidence 7532 11111110 1112233789999988875322 1111 11223334444322 2578
Q ss_pred EEEEeeecCCcc-EEEEee-CCCeEEEEecCCC
Q 018858 269 CVAFSMFGERGK-YLISGG-NDKLVKVWDCSRF 299 (349)
Q Consensus 269 ~i~~~~~~~~~~-~l~s~~-~d~~i~vwd~~~~ 299 (349)
.+.++ +||+ .+++.. .++.|.++|+.+.
T Consensus 318 gi~~s---~Dg~~l~va~~~~~~~VsVID~~t~ 347 (368)
T 1mda_H 318 AIIAA---QDGASDNYANSAGTEVLDIYDAASD 347 (368)
T ss_dssp EEEEC---CSSSCEEEEEETTTTEEEEEESSSC
T ss_pred eEEEC---CCCCEEEEEccCCCCeEEEEECCCC
Confidence 99999 8987 556666 5899999999998
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.27 E-value=1.4e-08 Score=82.13 Aligned_cols=203 Identities=9% Similarity=0.055 Sum_probs=122.6
Q ss_pred ecCCCCeEEEEEecCCCE-EEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcC
Q 018858 55 DVGNGPVTSLCFKSGNED-IIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIR 133 (349)
Q Consensus 55 ~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 133 (349)
.....-..+..|++++.. +++...++.|..||..+++. ..+ . ....+.+++++++++++++. ++.|.+||..
T Consensus 9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~-~---~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~ 81 (297)
T 3g4e_A 9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRV-T---MDAPVSSVALRQSGGYVATI--GTKFCALNWK 81 (297)
T ss_dssp CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEE-E---CSSCEEEEEEBTTSSEEEEE--TTEEEEEETT
T ss_pred ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEE-e---CCCceEEEEECCCCCEEEEE--CCeEEEEECC
Confidence 334445567889996554 55556678999999986532 211 1 23678999999999955543 4679999998
Q ss_pred CceEeceecc---ccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCC-------
Q 018858 134 QHCLYKSLRA---GHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD------- 203 (349)
Q Consensus 134 ~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------- 203 (349)
+++....... .....+..++++| +|+++++....
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~di~~d~------------------------------------dG~l~~~~~~~~~~~~~~ 125 (297)
T 3g4e_A 82 EQSAVVLATVDNDKKNNRFNDGKVDP------------------------------------AGRYFAGTMAEETAPAVL 125 (297)
T ss_dssp TTEEEEEEECCTTCSSEEEEEEEECT------------------------------------TSCEEEEEEECCSBTTBC
T ss_pred CCcEEEEEecCCCCCCCCCCCEEECC------------------------------------CCCEEEecCCcccccccc
Confidence 7765332220 1123467777877 77766544221
Q ss_pred --CeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccE
Q 018858 204 --GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKY 281 (349)
Q Consensus 204 --g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~ 281 (349)
..-.+|.+... ++ . ..+..+....+.++|+ |+++.
T Consensus 126 ~~~~~~l~~~d~~----------------------g~-----------------~-~~~~~~~~~pngi~~s---pdg~~ 162 (297)
T 3g4e_A 126 ERHQGALYSLFPD----------------------HH-----------------V-KKYFDQVDISNGLDWS---LDHKI 162 (297)
T ss_dssp CTTCEEEEEECTT----------------------SC-----------------E-EEEEEEESBEEEEEEC---TTSCE
T ss_pred cCCCcEEEEEECC----------------------CC-----------------E-EEEeeccccccceEEc---CCCCE
Confidence 22334443321 10 0 0111122346789999 89986
Q ss_pred EE-EeeCCCeEEEEecC--CCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 282 LI-SGGNDKLVKVWDCS--RFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 282 l~-s~~~d~~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
|+ +.+.++.|++|++. ++.... .+.+..+..+...+..+++.+ +|++.++...++.|..||.
T Consensus 163 lyv~~~~~~~i~~~~~d~~~G~~~~----~~~~~~~~~~~~~p~g~~~d~-~G~lwva~~~~~~v~~~d~ 227 (297)
T 3g4e_A 163 FYYIDSLSYSVDAFDYDLQTGQISN----RRSVYKLEKEEQIPDGMCIDA-EGKLWVACYNGGRVIRLDP 227 (297)
T ss_dssp EEEEEGGGTEEEEEEECTTTCCEEE----EEEEEECCGGGCEEEEEEEBT-TSCEEEEEETTTEEEEECT
T ss_pred EEEecCCCCcEEEEeccCCCCcccC----cEEEEECCCCCCCCCeeEECC-CCCEEEEEcCCCEEEEEcC
Confidence 64 55567899999974 332110 022223333445678889977 7776666667788999875
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.24 E-value=5.8e-09 Score=94.20 Aligned_cols=161 Identities=11% Similarity=0.073 Sum_probs=98.7
Q ss_pred CceEEEeCCCCcEEEEECCCCcEEEEeecC--CCCeEEEEEec---CCCEEEEEe------CCCeEEEEEccCCCcccce
Q 018858 28 PGFVASSGEDGCICWFDLRSKDVQLVTDVG--NGPVTSLCFKS---GNEDIIYVS------SGKEVKSFDVHMPASWRPL 96 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~---~~~~l~~~~------~dg~i~iwd~~~~~~~~~~ 96 (349)
+..++.++.|+.|+.+|.++++.+..+... ......+..+| ++ .+++++ .++.|..||.++++.....
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 199 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRF 199 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence 457888888999999999999998877642 11111111112 34 444443 3689999999998755443
Q ss_pred eeccC----------------------------cccceEEEEEccCCCEEEEEcCCCc-------------------EEE
Q 018858 97 ESYNY----------------------------NKEEINQIVCNPKSSFLACADDGGD-------------------VKI 129 (349)
Q Consensus 97 ~~~~~----------------------------~~~~v~~~~~~~~~~~l~~~~~dg~-------------------i~i 129 (349)
..... .......+++.|+...++.+..++. |..
T Consensus 200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A 279 (689)
T 1yiq_A 200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA 279 (689)
T ss_dssp ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence 32110 0011125788888889998887763 999
Q ss_pred EEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCc---EEEEEcCCCeE
Q 018858 130 IDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK---ICVVAKGDGVV 206 (349)
Q Consensus 130 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~dg~i 206 (349)
+|.++++.+..++ ............. +.....+.+ +++ .++.++.+|.+
T Consensus 280 lD~~TG~~~W~~~-~~~~d~wd~~~~~-------------------~~~l~d~~~--------~G~~~~~v~~~~~~G~l 331 (689)
T 1yiq_A 280 VNADTGEYVWHYQ-TTPGDAWDYTATQ-------------------HMILAELPI--------DGKPRKVLMQAPKNGFF 331 (689)
T ss_dssp EETTTCCEEEEEE-SSTTCCSCCCCCS-------------------CEEEEEEEE--------TTEEEEEEEECCTTSEE
T ss_pred EEccCCceeEeee-cCCcccccccCCC-------------------CcEEEeecc--------CCcEEEEEEEECCCCeE
Confidence 9999999888776 2211111100000 000000000 343 78889999999
Q ss_pred EEEEccCceee
Q 018858 207 DVINIESELNI 217 (349)
Q Consensus 207 ~i~d~~~~~~~ 217 (349)
+++|.++++.+
T Consensus 332 ~~lD~~tG~~l 342 (689)
T 1yiq_A 332 YVIDRATGELL 342 (689)
T ss_dssp EEEETTTCCEE
T ss_pred EEEECCCCCEe
Confidence 99999998765
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1e-07 Score=79.89 Aligned_cols=260 Identities=10% Similarity=0.036 Sum_probs=142.0
Q ss_pred CceEEEeCCCCcEEEEECCCCcEEEEeecCC---------CCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceee
Q 018858 28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGN---------GPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLES 98 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 98 (349)
+..++.++.++.|..+|.++++.+....... ..+... ...++..+++++.++.|..+|.++++.......
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 3567778888999999999999887776532 223222 222456788888999999999998865433322
Q ss_pred ccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEE--EccCCCCCCCCCCCCCCccccCC
Q 018858 99 YNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQ--FIPWKPWEGLPENNGNAGQCYNP 176 (349)
Q Consensus 99 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 176 (349)
- ......... .+..+++++.++.|..+|.++++.+.... ... .+.... -.|
T Consensus 132 ~---~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~-~~~-~~~~~~~~~~~-------------------- 184 (376)
T 3q7m_A 132 A---GEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVN-LDM-PSLSLRGESAP-------------------- 184 (376)
T ss_dssp S---SCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEE-CCC------CCCCCC--------------------
T ss_pred C---CceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEe-CCC-CceeecCCCCc--------------------
Confidence 1 111111122 24578888889999999999999887766 221 111000 000
Q ss_pred ceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCC---------ccceeeeeccccEEEEe--ee
Q 018858 177 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKP---------LKGSQSTSKVNIRDAEM--EI 245 (349)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~--~~ 245 (349)
.+ .+..+++++.++.|..+|.++++..-........ .+.......++..++.. +.
T Consensus 185 ------~~--------~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~ 250 (376)
T 3q7m_A 185 ------TT--------AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGN 250 (376)
T ss_dssp ------EE--------ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSC
T ss_pred ------EE--------ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcE
Confidence 00 2346777888999999999887665433221100 01111111122222211 00
Q ss_pred eeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecc-ccccceEEE
Q 018858 246 LDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI-NLNKKVNWL 324 (349)
Q Consensus 246 ~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~ 324 (349)
.........+.+.... ......+.. ++..++.++.++.|+.+|..+++... ... .....+...
T Consensus 251 l~~~d~~tG~~~w~~~--~~~~~~~~~-----~~~~l~~~~~~g~l~~~d~~tG~~~w---------~~~~~~~~~~~~~ 314 (376)
T 3q7m_A 251 LTALDLRSGQIMWKRE--LGSVNDFIV-----DGNRIYLVDQNDRVMALTIDGGVTLW---------TQSDLLHRLLTSP 314 (376)
T ss_dssp EEEEETTTCCEEEEEC--CCCEEEEEE-----ETTEEEEEETTCCEEEEETTTCCEEE---------EECTTTTSCCCCC
T ss_pred EEEEECCCCcEEeecc--CCCCCCceE-----ECCEEEEEcCCCeEEEEECCCCcEEE---------eecccCCCcccCC
Confidence 0000001111111111 122334433 34567777788999999999985322 221 111122222
Q ss_pred EeecCCCCcEEEeeCCCeEEEeeC
Q 018858 325 CTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 325 ~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.. .+..|+.++.+|.++++|.
T Consensus 315 ~~---~~~~l~v~~~~g~l~~~d~ 335 (376)
T 3q7m_A 315 VL---YNGNLVVGDSEGYLHWINV 335 (376)
T ss_dssp EE---ETTEEEEECTTSEEEEEET
T ss_pred EE---ECCEEEEEeCCCeEEEEEC
Confidence 22 2236888888888888875
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=7.5e-09 Score=93.27 Aligned_cols=105 Identities=10% Similarity=0.036 Sum_probs=75.0
Q ss_pred CCcEEEEECCCCcEEEEeecCCCC--------------------------------eEEEEEecCCCEEEEEeCCC----
Q 018858 37 DGCICWFDLRSKDVQLVTDVGNGP--------------------------------VTSLCFKSGNEDIIYVSSGK---- 80 (349)
Q Consensus 37 dg~i~vwd~~~~~~~~~~~~~~~~--------------------------------v~~~~~~~~~~~l~~~~~dg---- 80 (349)
+|.|+.+|..+++.+..+...... ...++++|++..++.++.++
T Consensus 189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~ 268 (677)
T 1kb0_A 189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWS 268 (677)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCcccc
Confidence 689999999999998877643211 12467888889888887664
Q ss_pred ---------------eEEEEEccCCCcccceeeccCcc-------cceEEEEEccCC---CEEEEEcCCCcEEEEEcCCc
Q 018858 81 ---------------EVKSFDVHMPASWRPLESYNYNK-------EEINQIVCNPKS---SFLACADDGGDVKIIDIRQH 135 (349)
Q Consensus 81 ---------------~i~iwd~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~ 135 (349)
.|..+|.++++.....+... |. .....+....+| ..++.++.+|.++++|.+++
T Consensus 269 ~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~-~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG 347 (677)
T 1kb0_A 269 HKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETP-GDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG 347 (677)
T ss_dssp HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESST-TCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred CCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCC-CcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC
Confidence 59999999887554443321 11 122223333466 67899999999999999999
Q ss_pred eEeceec
Q 018858 136 CLYKSLR 142 (349)
Q Consensus 136 ~~~~~~~ 142 (349)
+.+..++
T Consensus 348 ~~l~~~~ 354 (677)
T 1kb0_A 348 KFISAKN 354 (677)
T ss_dssp CEEEEEE
T ss_pred CEecccc
Confidence 9887765
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=4.5e-09 Score=94.71 Aligned_cols=155 Identities=11% Similarity=0.018 Sum_probs=101.0
Q ss_pred CceEEEeCCCCcEEEEECCCCcEEEEeecC-C----CCeEE-EEEecCCCEEEEEeC------CCeEEEEEccCCCcccc
Q 018858 28 PGFVASSGEDGCICWFDLRSKDVQLVTDVG-N----GPVTS-LCFKSGNEDIIYVSS------GKEVKSFDVHMPASWRP 95 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~-~----~~v~~-~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~ 95 (349)
+..|+.++.|+.|..+|..+++.+..+..+ . ..+.+ ... .+..+++++. ++.|+.+|.++++....
T Consensus 128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~ 205 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWR 205 (677)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence 457888888999999999999999888754 2 11211 111 2345555543 68999999998875543
Q ss_pred eeeccCc-----------------------------ccceEEEEEccCCCEEEEEcCCC-------------------cE
Q 018858 96 LESYNYN-----------------------------KEEINQIVCNPKSSFLACADDGG-------------------DV 127 (349)
Q Consensus 96 ~~~~~~~-----------------------------~~~v~~~~~~~~~~~l~~~~~dg-------------------~i 127 (349)
....... ......++++|++..++.+..++ .|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv 285 (677)
T 1kb0_A 206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASI 285 (677)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEE
Confidence 3321110 01113578888888888887664 49
Q ss_pred EEEEcCCceEeceecccccc--------ceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCC---cE
Q 018858 128 KIIDIRQHCLYKSLRAGHSS--------ICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTN---KI 196 (349)
Q Consensus 128 ~i~d~~~~~~~~~~~~~~~~--------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 196 (349)
..+|.++++.+..++..+.. ...-+.... +| ..
T Consensus 286 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~------------------------------------dG~~~~~ 329 (677)
T 1kb0_A 286 VALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKI------------------------------------AGKPRKV 329 (677)
T ss_dssp EEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEE------------------------------------TTEEEEE
T ss_pred EEEECCCCCEEEEEecCCCcccccccCCCcEEEeccc------------------------------------CCcEeeE
Confidence 99999999988776621110 000111111 45 67
Q ss_pred EEEEcCCCeEEEEEccCceeeeec
Q 018858 197 CVVAKGDGVVDVINIESELNISRS 220 (349)
Q Consensus 197 l~~~~~dg~i~i~d~~~~~~~~~~ 220 (349)
++.++.+|.++++|.++++.+...
T Consensus 330 l~~~~~~G~l~~lD~~tG~~l~~~ 353 (677)
T 1kb0_A 330 ILHAPKNGFFFVLDRTNGKFISAK 353 (677)
T ss_dssp EEECCTTSEEEEEETTTCCEEEEE
T ss_pred EEEECCCCEEEEEECCCCCEeccc
Confidence 889999999999999998765543
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.8e-09 Score=97.96 Aligned_cols=197 Identities=12% Similarity=0.092 Sum_probs=118.5
Q ss_pred CCCCeEEEEEecCCCEEEEEeC-----CCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCc-----
Q 018858 57 GNGPVTSLCFKSGNEDIIYVSS-----GKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGD----- 126 (349)
Q Consensus 57 ~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~----- 126 (349)
+...+..++|||+|++||.+.. ...|++||+.+++.... .+. ......++|+ |++.|+.+..+..
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~~--~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~ 201 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PLK--DVKFSGISWL-GNEGFFYSSYDKPDGSEL 201 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EEE--EEESCCCEEE-TTTEEEEEESSCCC----
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--ccC--CceeccEEEe-CCCEEEEEEecCcccccc
Confidence 4456888999999999886432 25799999998764322 111 1113568999 9998988877643
Q ss_pred --------EEEEEcCCce----Eeceeccc-cccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCC
Q 018858 127 --------VKIIDIRQHC----LYKSLRAG-HSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKT 193 (349)
Q Consensus 127 --------i~i~d~~~~~----~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (349)
|++|++.++. .+.... . +......+.|+| +
T Consensus 202 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~-~~~~~~~~~~~~Sp------------------------------------D 244 (693)
T 3iuj_A 202 SARTDQHKVYFHRLGTAQEDDRLVFGAI-PAQHHRYVGATVTE------------------------------------D 244 (693)
T ss_dssp ---CCCCEEEEEETTSCGGGCEEEESCS-GGGCCSEEEEEECT------------------------------------T
T ss_pred cccCCCcEEEEEECCCCcccceEEEecC-CCCCeEEEEEEEcC------------------------------------C
Confidence 9999987653 222222 2 333467788888 7
Q ss_pred CcEEEEEc----CCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEE
Q 018858 194 NKICVVAK----GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASC 269 (349)
Q Consensus 194 ~~~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 269 (349)
+++|+... ....|+++|+.++. .....+..+......
T Consensus 245 g~~l~~~~~~~~~~~~i~~~d~~~~~---------------------------------------~~~~~l~~~~~~~~~ 285 (693)
T 3iuj_A 245 DRFLLISAANSTSGNRLYVKDLSQEN---------------------------------------APLLTVQGDLDADVS 285 (693)
T ss_dssp SCEEEEEEESSSSCCEEEEEETTSTT---------------------------------------CCCEEEECSSSSCEE
T ss_pred CCEEEEEEccCCCCcEEEEEECCCCC---------------------------------------CceEEEeCCCCceEE
Confidence 77775433 23589999987531 112233334444444
Q ss_pred EEEeeecCCcc-EEEEeeCC---CeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEee-CCC--e
Q 018858 270 VAFSMFGERGK-YLISGGND---KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD-TSK--V 342 (349)
Q Consensus 270 i~~~~~~~~~~-~l~s~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg--~ 342 (349)
. ++ +++. +++....+ +.|..+|+.++.. .....+..|...+. .|++ +++.|+... .++ .
T Consensus 286 ~-~~---~~g~~l~~~t~~~~~~~~l~~~d~~~~~~-------~~~~~l~~~~~~~~--~~s~-~g~~lv~~~~~~g~~~ 351 (693)
T 3iuj_A 286 L-VD---NKGSTLYLLTNRDAPNRRLVTVDAANPGP-------AHWRDLIPERQQVL--TVHS-GSGYLFAEYMVDATAR 351 (693)
T ss_dssp E-EE---EETTEEEEEECTTCTTCEEEEEETTSCCG-------GGCEEEECCCSSCE--EEEE-ETTEEEEEEEETTEEE
T ss_pred E-Ee---ccCCEEEEEECCCCCCCEEEEEeCCCCCc-------cccEEEecCCCCEE--EEEE-ECCEEEEEEEECCeeE
Confidence 3 44 3444 44444433 6799999887532 11223344544444 6666 555666654 454 6
Q ss_pred EEEeeC
Q 018858 343 VKVYSI 348 (349)
Q Consensus 343 i~iw~~ 348 (349)
|++|++
T Consensus 352 l~~~d~ 357 (693)
T 3iuj_A 352 VEQFDY 357 (693)
T ss_dssp EEEECT
T ss_pred EEEEEC
Confidence 777775
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=3.3e-07 Score=72.77 Aligned_cols=158 Identities=11% Similarity=0.063 Sum_probs=100.4
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEE-eCCCeEEEEEccCCCccc
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYV-SSGKEVKSFDVHMPASWR 94 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~ 94 (349)
....+++++++++.++++-..++.|..++.........+.........+++++++..|+.+ ...+.|.++++.... ..
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~ 114 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RR 114 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC-EE
Confidence 4567899999745666666677899999987665443333333567899999976666555 456799999986432 22
Q ss_pred ceeeccCcccceEEEEEccCCCEEEEEcC---CCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCc
Q 018858 95 PLESYNYNKEEINQIVCNPKSSFLACADD---GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAG 171 (349)
Q Consensus 95 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 171 (349)
.+. .........++++|++..|+.+.. .+.|..+++.... ...+..........++++|
T Consensus 115 ~~~--~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~--------------- 176 (267)
T 1npe_A 115 VLF--DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDA--------------- 176 (267)
T ss_dssp EEE--CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEET---------------
T ss_pred EEE--ECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcC---------------
Confidence 221 111245788999997655554443 3678888875322 2222101223466778877
Q ss_pred cccCCceeEEeecCcccccCCCCcE-EEEEcCCCeEEEEEccC
Q 018858 172 QCYNPAFVHAIAIPDADMLDKTNKI-CVVAKGDGVVDVINIES 213 (349)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~i~d~~~ 213 (349)
++.. +++-...+.|..+|+..
T Consensus 177 ---------------------~~~~lyv~d~~~~~I~~~~~~g 198 (267)
T 1npe_A 177 ---------------------FSSQLCWVDAGTHRAECLNPAQ 198 (267)
T ss_dssp ---------------------TTTEEEEEETTTTEEEEEETTE
T ss_pred ---------------------CCCEEEEEECCCCEEEEEecCC
Confidence 5544 45555678999999874
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.19 E-value=4.3e-09 Score=86.48 Aligned_cols=215 Identities=7% Similarity=-0.051 Sum_probs=124.4
Q ss_pred ceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEE
Q 018858 29 GFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQ 108 (349)
Q Consensus 29 ~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 108 (349)
..++.++.++.|..+|.. ++.......+...+.++...+++. +..++.++.|..+|.. ++...... .....+.+
T Consensus 108 ~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~---~~~~~~~~ 181 (330)
T 3hxj_A 108 DILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFK---TNDAITSA 181 (330)
T ss_dssp TEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEE---CSSCCCSC
T ss_pred CEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEe---cCCCceee
Confidence 356666677888888877 666666655555555566665555 5667777888888876 43322222 12234555
Q ss_pred EEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCccc
Q 018858 109 IVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDAD 188 (349)
Q Consensus 109 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (349)
+...+++...+ ++ +.|..+| .+++...... .....+.++...+
T Consensus 182 ~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~-~~~~~~~~~~~~~-------------------------------- 224 (330)
T 3hxj_A 182 ASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFY-AGYWTVTRPAISE-------------------------------- 224 (330)
T ss_dssp CEECTTCCEEE-ES--SSEEEEC-TTSCEEEEEC-CSSCCCSCCEECT--------------------------------
T ss_pred eEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEc-cCCcceeceEECC--------------------------------
Confidence 66666665443 44 6788888 6666655555 3344566666655
Q ss_pred ccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceE
Q 018858 189 MLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAAS 268 (349)
Q Consensus 189 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~ 268 (349)
++. +.+++.++.|..+|.... .+..+......+.
T Consensus 225 ----~g~-l~v~t~~~gl~~~~~~g~-----------------------------------------~~~~~~~~~~~~~ 258 (330)
T 3hxj_A 225 ----DGT-IYVTSLDGHLYAINPDGT-----------------------------------------EKWRFKTGKRIES 258 (330)
T ss_dssp ----TSC-EEEEETTTEEEEECTTSC-----------------------------------------EEEEEECSSCCCS
T ss_pred ----CCe-EEEEcCCCeEEEECCCCC-----------------------------------------EeEEeeCCCCccc
Confidence 444 445566677777764321 1111221222233
Q ss_pred EEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 269 CVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 269 ~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.+.+. +++ .|..++.++.|..+|. ++ ..+.........+.++...+ ++ .|..++.+|.+++...
T Consensus 259 ~~~~~---~~g-~l~v~t~~ggl~~~d~-~g---------~~~~~~~~~~~~~~~~~~d~-~g-~l~~gt~~G~~~~~~~ 322 (330)
T 3hxj_A 259 SPVIG---NTD-TIYFGSYDGHLYAINP-DG---------TEKWNFETGSWIIATPVIDE-NG-TIYFGTRNGKFYALFN 322 (330)
T ss_dssp CCEEC---TTS-CEEEECTTCEEEEECT-TS---------CEEEEEECSSCCCSCCEECT-TC-CEEEECTTSCEEEEEC
T ss_pred cceEc---CCC-eEEEecCCCCEEEECC-CC---------cEEEEEEcCCccccceEEcC-CC-EEEEEcCCCeEEEEec
Confidence 34444 455 5666777888999996 44 22222222344455665544 55 5888999999988654
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=4.2e-08 Score=80.50 Aligned_cols=152 Identities=11% Similarity=0.020 Sum_probs=96.7
Q ss_pred ceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeec----CCCCeEEEEEecCCCEEEEEeC------CCeEEE
Q 018858 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDV----GNGPVTSLCFKSGNEDIIYVSS------GKEVKS 84 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~------dg~i~i 84 (349)
...+.+++++++ ++++++. .+ .|.+||..+++....... ....+..++++|+|+++++... .+.|..
T Consensus 89 ~~~v~~i~~~~d-g~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~ 165 (326)
T 2ghs_A 89 PFMGSALAKISD-SKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYH 165 (326)
T ss_dssp SSCEEEEEEEET-TEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEE
T ss_pred CCcceEEEEeCC-CeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEE
Confidence 457899999998 7776655 33 499999988875433221 1235789999999987665432 245555
Q ss_pred EEccCCCcccceeeccCcccceEEEEEccCCCEEEE-EcCCCcEEEEEcC--Cc-eE-----eceeccccccceeEEEEc
Q 018858 85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLAC-ADDGGDVKIIDIR--QH-CL-----YKSLRAGHSSICSSVQFI 155 (349)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~--~~-~~-----~~~~~~~~~~~v~~~~~~ 155 (349)
++ +++ ...+. ........++|+|+++.++. .+.++.|.+||+. ++ +. ...+. ........+++.
T Consensus 166 ~~--~g~-~~~~~---~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~-~~~~~p~gi~~d 238 (326)
T 2ghs_A 166 VA--KGK-VTKLF---ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDST-GIKGGMDGSVCD 238 (326)
T ss_dssp EE--TTE-EEEEE---EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECT-TSSSEEEEEEEC
T ss_pred Ee--CCc-EEEee---CCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECC-CCCCCCCeeEEC
Confidence 55 332 22221 11234678999999987654 4567889999986 55 31 11222 223345566666
Q ss_pred cCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEcc
Q 018858 156 PWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE 212 (349)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 212 (349)
+ +++++++...++.|..||..
T Consensus 239 ~------------------------------------~G~lwva~~~~~~v~~~d~~ 259 (326)
T 2ghs_A 239 A------------------------------------EGHIWNARWGEGAVDRYDTD 259 (326)
T ss_dssp T------------------------------------TSCEEEEEETTTEEEEECTT
T ss_pred C------------------------------------CCCEEEEEeCCCEEEEECCC
Confidence 6 78777766667889999884
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.19 E-value=3.6e-08 Score=82.63 Aligned_cols=219 Identities=7% Similarity=0.050 Sum_probs=131.6
Q ss_pred ceEEEeCCCCcEEEEECCCCcEEEEeecCCCCe-----EEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCc-
Q 018858 29 GFVASSGEDGCICWFDLRSKDVQLVTDVGNGPV-----TSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYN- 102 (349)
Q Consensus 29 ~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~- 102 (349)
..++.++.++.|..+|..+++.+.......... ...... +..++.++.++.|..+|.++++...........
T Consensus 144 ~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~ 221 (376)
T 3q7m_A 144 GLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATG 221 (376)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC---
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCC
Confidence 467778889999999999999888776432211 112222 456788888999999999887644332211000
Q ss_pred cc---ceEEEEEcc--CCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCc
Q 018858 103 KE---EINQIVCNP--KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPA 177 (349)
Q Consensus 103 ~~---~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (349)
.. .+..+.-.| .+..++.++.++.+..+|.++++.+.... .. ....+..
T Consensus 222 ~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~-~~--~~~~~~~----------------------- 275 (376)
T 3q7m_A 222 STEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRE-LG--SVNDFIV----------------------- 275 (376)
T ss_dssp --------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEEC-CC--CEEEEEE-----------------------
T ss_pred CcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeecc-CC--CCCCceE-----------------------
Confidence 00 000000111 24577778888999999999998876655 21 2223322
Q ss_pred eeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeee
Q 018858 178 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLD 257 (349)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (349)
++..+.+++.++.|..+|..+++. .
T Consensus 276 ---------------~~~~l~~~~~~g~l~~~d~~tG~~----------------------------------------~ 300 (376)
T 3q7m_A 276 ---------------DGNRIYLVDQNDRVMALTIDGGVT----------------------------------------L 300 (376)
T ss_dssp ---------------ETTEEEEEETTCCEEEEETTTCCE----------------------------------------E
T ss_pred ---------------ECCEEEEEcCCCeEEEEECCCCcE----------------------------------------E
Confidence 345677778899999999987531 1
Q ss_pred eeec-CCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEE-EEeecCCCCcEE
Q 018858 258 YSVG-GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNW-LCTTPTESENLV 335 (349)
Q Consensus 258 ~~~~-~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~ 335 (349)
.... .....+...... +..|+.++.+|.|+++|..+++ ++.........+.. ... . + ..|+
T Consensus 301 w~~~~~~~~~~~~~~~~-----~~~l~v~~~~g~l~~~d~~tG~---------~~~~~~~~~~~~~~~~~~-~-~-~~l~ 363 (376)
T 3q7m_A 301 WTQSDLLHRLLTSPVLY-----NGNLVVGDSEGYLHWINVEDGR---------FVAQQKVDSSGFQTEPVA-A-D-GKLL 363 (376)
T ss_dssp EEECTTTTSCCCCCEEE-----TTEEEEECTTSEEEEEETTTCC---------EEEEEECCTTCBCSCCEE-E-T-TEEE
T ss_pred EeecccCCCcccCCEEE-----CCEEEEEeCCCeEEEEECCCCc---------EEEEEecCCCcceeCCEE-E-C-CEEE
Confidence 1111 111122233333 3577788889999999999984 33222222222222 122 2 3 3788
Q ss_pred EeeCCCeEEEee
Q 018858 336 VCDTSKVVKVYS 347 (349)
Q Consensus 336 ~~~~dg~i~iw~ 347 (349)
.++.+|.|+.|+
T Consensus 364 v~~~~G~l~~~~ 375 (376)
T 3q7m_A 364 IQAKDGTVYSIT 375 (376)
T ss_dssp EEBTTSCEEEEE
T ss_pred EEeCCCEEEEEe
Confidence 899999999987
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.18 E-value=5.3e-09 Score=86.50 Aligned_cols=238 Identities=5% Similarity=-0.010 Sum_probs=135.1
Q ss_pred CCeEEEEEecCCCEEEEEeC--CCeEEEEEccCCCcccceee----ccCcccceEEEEEccCCCEEEEEcC-----CCcE
Q 018858 59 GPVTSLCFKSGNEDIIYVSS--GKEVKSFDVHMPASWRPLES----YNYNKEEINQIVCNPKSSFLACADD-----GGDV 127 (349)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i 127 (349)
..+..++++++|+.+++... ++.++||.+.+++ ...+.. ...+...+..+++.++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 57889999999998887642 3435556554332 121111 1123457899999999887666543 5789
Q ss_pred EEEEcCCceEeceeccc-----cccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEc-
Q 018858 128 KIIDIRQHCLYKSLRAG-----HSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK- 201 (349)
Q Consensus 128 ~i~d~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 201 (349)
.+||+.+++.+..+... +...+..++++|+ ++..+++..
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~-----------------------------------~g~~yvtd~~ 140 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLI-----------------------------------HNFVYISDPA 140 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETT-----------------------------------TTEEEEEECC
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecC-----------------------------------CCEEEEEcCc
Confidence 99999988876665411 1234567777762 344455554
Q ss_pred --CCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCc
Q 018858 202 --GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERG 279 (349)
Q Consensus 202 --~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~ 279 (349)
.++.|.+||+.+++.................+.++|..+.+. ..++ .. ..+ ...++.|+++ |++
T Consensus 141 ~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~-~~~g------~~-~~~---~~~~~gia~s---~dg 206 (343)
T 2qe8_A 141 PDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIG-QPDG------TV-IRP---HLGVNGIVLD---AEN 206 (343)
T ss_dssp SGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEE-CTTS------CE-ECC---CCCEEEEEEC---TTS
T ss_pred cCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEec-cCCC------ce-ece---ecccceeEec---cCC
Confidence 678999999987765544332111111113444455433210 0000 00 001 1246889999 899
Q ss_pred cEEEEeeCCC-eEEEEecCCCcceecccccceee--eccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 280 KYLISGGNDK-LVKVWDCSRFQGVQTSINNDLLI--KNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 280 ~~l~s~~~d~-~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
++|+.+..++ .++.++....... ......... ...++......+++.+ +|.++++...++.|.+||.
T Consensus 207 ~~ly~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g~~g~pdgia~d~-~G~l~va~~~~~~V~~~d~ 276 (343)
T 2qe8_A 207 EWLYLSPMHSTSMYRIKSADLSNL-QLTDAELGSKIERYSEKPICDGISIDK-DHNIYVGDLAHSAIGVITS 276 (343)
T ss_dssp CEEEEEESSCSEEEEEEHHHHTCT-TCCHHHHHTTCEEEEECCSCSCEEECT-TCCEEEEEGGGTEEEEEET
T ss_pred CEEEEEeCCCCeEEEEEHHHhcCC-CCChhhhhcceEecccCCCCceEEECC-CCCEEEEccCCCeEEEEEC
Confidence 9888877665 5555543210000 000000100 1113344567788987 7877777778899999985
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.7e-08 Score=82.06 Aligned_cols=202 Identities=8% Similarity=-0.008 Sum_probs=121.0
Q ss_pred EEEeecCCCCeEEEEEecCCC-EEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEE
Q 018858 51 QLVTDVGNGPVTSLCFKSGNE-DIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKI 129 (349)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 129 (349)
+..+...........|+|+++ .+++...++.|..|+.. ++ .. .+......+..++++++++++++...++.|.+
T Consensus 37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~---~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~ 111 (305)
T 3dr2_A 37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VD---VLLDATAFTNGNAVDAQQRLVHCEHGRRAITR 111 (305)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EE---EEEESCSCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EE---EEeCCCCccceeeECCCCCEEEEECCCCEEEE
Confidence 344444556678899999998 45666678899999873 32 22 22223466889999999997777666678999
Q ss_pred EEcCCceEeceecc--c-cccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEE----EcC
Q 018858 130 IDIRQHCLYKSLRA--G-HSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVV----AKG 202 (349)
Q Consensus 130 ~d~~~~~~~~~~~~--~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~ 202 (349)
|+.. ++....... + ....+..+++.| +|+++++ |..
T Consensus 112 ~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~------------------------------------dG~l~~td~~~g~~ 154 (305)
T 3dr2_A 112 SDAD-GQAHLLVGRYAGKRLNSPNDLIVAR------------------------------------DGAIWFTDPPFGLR 154 (305)
T ss_dssp ECTT-SCEEEEECEETTEECSCCCCEEECT------------------------------------TSCEEEECCSGGGS
T ss_pred ECCC-CCEEEEEeccCCCccCCCCCEEECC------------------------------------CCCEEEeCcCCCcc
Confidence 9975 443221110 1 112355677777 6777765 332
Q ss_pred -------------CCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEE
Q 018858 203 -------------DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASC 269 (349)
Q Consensus 203 -------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~ 269 (349)
.+.|..||..+++. .. +. .....+.
T Consensus 155 ~~~~~~~~~~~~~~~~v~~~d~~~g~~--------------------------------------~~---~~-~~~~p~g 192 (305)
T 3dr2_A 155 KPSQGCPADPELAHHSVYRLPPDGSPL--------------------------------------QR---MA-DLDHPNG 192 (305)
T ss_dssp CGGGSCCCCCSSSCEEEEEECSSSCCC--------------------------------------EE---EE-EESSEEE
T ss_pred ccccccccccccCCCeEEEEcCCCCcE--------------------------------------EE---Ee-cCCCCcc
Confidence 24455566543210 11 11 2234578
Q ss_pred EEEeeecCCccEEEEeeCC------CeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeE
Q 018858 270 VAFSMFGERGKYLISGGND------KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVV 343 (349)
Q Consensus 270 i~~~~~~~~~~~l~s~~~d------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 343 (349)
++|+ |+++.|+.+... +.|++|++.... ... ...... .....+..+++.+ +|+ |.+++.+| |
T Consensus 193 l~~s---pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~---~~~~~~--~~~~~pdgi~~d~-~G~-lwv~~~~g-v 260 (305)
T 3dr2_A 193 LAFS---PDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHD---RRHFAS--VPDGLPDGFCVDR-GGW-LWSSSGTG-V 260 (305)
T ss_dssp EEEC---TTSSEEEEEECCC---CCCEEEEEEEETTE-EEE---EEEEEC--CSSSCCCSEEECT-TSC-EEECCSSE-E
T ss_pred eEEc---CCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccC---CeEEEE--CCCCCCCeEEECC-CCC-EEEecCCc-E
Confidence 8999 899877776654 789999987642 100 011111 1233455677766 676 55555444 7
Q ss_pred EEeeC
Q 018858 344 KVYSI 348 (349)
Q Consensus 344 ~iw~~ 348 (349)
.+|+.
T Consensus 261 ~~~~~ 265 (305)
T 3dr2_A 261 CVFDS 265 (305)
T ss_dssp EEECT
T ss_pred EEECC
Confidence 77764
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.6e-11 Score=102.59 Aligned_cols=179 Identities=8% Similarity=0.051 Sum_probs=95.7
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceecccccc-
Q 018858 69 GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSS- 147 (349)
Q Consensus 69 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~- 147 (349)
++..+++++.|+.|+.||..+++....... ..+.+..+..++..+++++.||.|+.||.++++.+..+. .+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-----~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~-~~~~~ 81 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-----DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLP-FTIPE 81 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-----CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECS-CCHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-----CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeee-ccCcc
Confidence 577899999999999999998865544433 233344445567788888899999999999888766554 2211
Q ss_pred ceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCc
Q 018858 148 ICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPL 227 (349)
Q Consensus 148 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 227 (349)
.+. .+| .. . .+..+++++.++.|+.||.++++
T Consensus 82 ~~~---~sp------------------------------~~--~-~~~~v~~g~~dg~v~a~D~~tG~------------ 113 (369)
T 2hz6_A 82 LVQ---ASP------------------------------CR--S-SDGILYMGKKQDIWYVIDLLTGE------------ 113 (369)
T ss_dssp HHT---TCS------------------------------CC--------CCCCEEEEEEEEECCC---------------
T ss_pred ccc---cCc------------------------------eE--e-cCCEEEEEeCCCEEEEEECCCCc------------
Confidence 110 011 00 0 23467778889999999999763
Q ss_pred cceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccc
Q 018858 228 KGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSIN 307 (349)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~ 307 (349)
.+..+..+. ...++ |++..+++++.|+.|+.||..+++....
T Consensus 114 ----------------------------~~w~~~~~~----~~~~~---p~~~~v~~~~~dg~v~a~d~~tG~~~W~--- 155 (369)
T 2hz6_A 114 ----------------------------KQQTLSSAF----ADSLS---PSTSLLYLGRTEYTITMYDTKTRELRWN--- 155 (369)
T ss_dssp ------------------------------------------------------EEEEEEEEEEECCCSSSSSCCCE---
T ss_pred ----------------------------EEEEecCCC----ccccc---ccCCEEEEEecCCEEEEEECCCCCEEEe---
Confidence 222222221 13345 6778899999999999999999854321
Q ss_pred cceeeeccccccceEEEEeecCCC---CcEEEeeCCCeEEEeeC
Q 018858 308 NDLLIKNINLNKKVNWLCTTPTES---ENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 308 ~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~~~dg~i~iw~~ 348 (349)
...+ .....++.. +. ..+++++.||.|+.||.
T Consensus 156 ------~~~~--~~~~~~~~~-~~~~~~~v~~~~~dg~v~a~d~ 190 (369)
T 2hz6_A 156 ------ATYF--DYAASLPED-DVDYKMSHFVSNGDGLVVTVDS 190 (369)
T ss_dssp ------EEEE--EECCBCCCC-CTTCCCCEEEEETSCEEEEECT
T ss_pred ------Eecc--cccCccccC-CccccceEEEECCCCEEEEEEC
Confidence 1110 011122222 11 46788888999999886
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.7e-09 Score=88.94 Aligned_cols=272 Identities=9% Similarity=-0.002 Sum_probs=151.5
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 85 (349)
+..-++..+.....++.+..+ ..++.++.++.|..|| .+++.......+...+.++...+++. +..++.+ |..+
T Consensus 10 ~~~W~~~~~~~~~~~~~~d~~--g~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~ 83 (330)
T 3hxj_A 10 KIKWEFLIGNSIDSSPILAKN--GTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAI 83 (330)
T ss_dssp --CCTTTSCEEECCCCEECTT--SCEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEE
T ss_pred eEEEEEeCCCCcccCceEccC--CeEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEE
Confidence 344444444433444445444 4577778888999999 88887766655444556666666664 5555544 8888
Q ss_pred EccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCC
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPE 165 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 165 (349)
|. +++....... .........+. +..+..++.++.|..+|.. ++...... .....+.++...+
T Consensus 84 d~-~g~~~~~~~~---~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~-~~~~~~~~~~~~~--------- 146 (330)
T 3hxj_A 84 NP-DGTEKWRFDT---KKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFK-TKKAIYATPIVSE--------- 146 (330)
T ss_dssp CC-CGGGGGGSCC--------CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEE-CSSCCCSCCEECT---------
T ss_pred CC-CCcEEEEEEC---CCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEc-CCCceeeeeEEcC---------
Confidence 75 4432222211 11222223333 5567778888999999988 76665555 3444445555554
Q ss_pred CCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeee
Q 018858 166 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI 245 (349)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (349)
++. +.+++.++.|..+|.. ++....... ....+..+...+++..++..+.
T Consensus 147 ---------------------------~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~-~~~~~~~~~~d~~g~l~v~t~~ 196 (330)
T 3hxj_A 147 ---------------------------DGT-IYVGSNDNYLYAINPD-GTEKWRFKT-NDAITSAASIGKDGTIYFGSDK 196 (330)
T ss_dssp ---------------------------TSC-EEEECTTSEEEEECTT-SCEEEEEEC-SSCCCSCCEECTTCCEEEESSS
T ss_pred ---------------------------CCE-EEEEcCCCEEEEECCC-CCEeEEEec-CCCceeeeEEcCCCEEEEEeCE
Confidence 455 6667788999999988 544333222 2334566777777776664311
Q ss_pred eeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEE
Q 018858 246 LDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLC 325 (349)
Q Consensus 246 ~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 325 (349)
..... ...............+.++... ++|. |..++.++.|..+|.. + ..+.........+..+.
T Consensus 197 l~~~d-~~g~~~~~~~~~~~~~~~~~~~---~~g~-l~v~t~~~gl~~~~~~-g---------~~~~~~~~~~~~~~~~~ 261 (330)
T 3hxj_A 197 VYAIN-PDGTEKWNFYAGYWTVTRPAIS---EDGT-IYVTSLDGHLYAINPD-G---------TEKWRFKTGKRIESSPV 261 (330)
T ss_dssp EEEEC-TTSCEEEEECCSSCCCSCCEEC---TTSC-EEEEETTTEEEEECTT-S---------CEEEEEECSSCCCSCCE
T ss_pred EEEEC-CCCcEEEEEccCCcceeceEEC---CCCe-EEEEcCCCeEEEECCC-C---------CEeEEeeCCCCccccce
Confidence 11111 1112222333334557777777 6665 4556667888888743 3 22222222222233344
Q ss_pred eecCCCCcEEEeeCCCeEEEee
Q 018858 326 TTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 326 ~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
..+ ++ .|..++.+|.|..+|
T Consensus 262 ~~~-~g-~l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 262 IGN-TD-TIYFGSYDGHLYAIN 281 (330)
T ss_dssp ECT-TS-CEEEECTTCEEEEEC
T ss_pred EcC-CC-eEEEecCCCCEEEEC
Confidence 432 33 677788887787776
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=2.8e-07 Score=75.41 Aligned_cols=238 Identities=8% Similarity=-0.017 Sum_probs=139.8
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecC--------------------CCCeEEEEEecCCCEEEE
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVG--------------------NGPVTSLCFKSGNEDIIY 75 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~--------------------~~~v~~~~~~~~~~~l~~ 75 (349)
....++++.++ +++++++..++.|..|+..+++.. .+... ...+..+++.++...|+.
T Consensus 19 ~~p~~i~~d~~-g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v 96 (322)
T 2fp8_A 19 YAPNSFTFDST-NKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYI 96 (322)
T ss_dssp SCCCCEECCTT-CSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEE
T ss_pred CCceEEEEcCC-CCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEE
Confidence 34567889988 787888888899999998765542 22210 135788999973334555
Q ss_pred EeCCCeEEEEEccCCCcccceee-ccC-cccceEEEEEcc-CCCEEEEEcC-----------------CCcEEEEEcCCc
Q 018858 76 VSSGKEVKSFDVHMPASWRPLES-YNY-NKEEINQIVCNP-KSSFLACADD-----------------GGDVKIIDIRQH 135 (349)
Q Consensus 76 ~~~dg~i~iwd~~~~~~~~~~~~-~~~-~~~~v~~~~~~~-~~~~l~~~~~-----------------dg~i~i~d~~~~ 135 (349)
+...+.|..+|..++. ...+.. ... .......+++.+ +++..++-.. ++.|..||..++
T Consensus 97 ~d~~~~i~~~d~~~g~-~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 175 (322)
T 2fp8_A 97 VDCYYHLSVVGSEGGH-ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK 175 (322)
T ss_dssp EETTTEEEEECTTCEE-CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred EECCCCEEEEeCCCCE-EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence 6555558888876432 122211 111 113467899999 8876665432 366888887766
Q ss_pred eEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEE-cCCCeEEEEEccCc
Q 018858 136 CLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVA-KGDGVVDVINIESE 214 (349)
Q Consensus 136 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~ 214 (349)
+...... .......++++| +++.|.++ ...+.|..|++...
T Consensus 176 ~~~~~~~--~~~~p~gia~~~------------------------------------dg~~lyv~d~~~~~I~~~~~~~~ 217 (322)
T 2fp8_A 176 ETTLLLK--ELHVPGGAEVSA------------------------------------DSSFVLVAEFLSHQIVKYWLEGP 217 (322)
T ss_dssp EEEEEEE--EESCCCEEEECT------------------------------------TSSEEEEEEGGGTEEEEEESSST
T ss_pred EEEEecc--CCccCcceEECC------------------------------------CCCEEEEEeCCCCeEEEEECCCC
Confidence 5432222 122345677777 77755544 56789999998742
Q ss_pred eeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeC-------
Q 018858 215 LNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN------- 287 (349)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~------- 287 (349)
.. ...+....+. + ...++++ ++|++.++...
T Consensus 218 ~~-----------------------------------~~~~~~~~~~---g-P~gi~~d---~~G~l~va~~~~~~~~~~ 255 (322)
T 2fp8_A 218 KK-----------------------------------GTAEVLVKIP---N-PGNIKRN---ADGHFWVSSSEELDGNMH 255 (322)
T ss_dssp TT-----------------------------------TCEEEEEECS---S-EEEEEEC---TTSCEEEEEEEETTSSTT
T ss_pred cC-----------------------------------CccceEEeCC---C-CCCeEEC---CCCCEEEEecCccccccc
Confidence 10 0001111121 2 5678888 78876666544
Q ss_pred ---CCeEEEEecCCCcceecccccceeeecccc----ccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 288 ---DKLVKVWDCSRFQGVQTSINNDLLIKNINL----NKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 288 ---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.+.|..+|... +.+..+... -..+..+++ . ++++.++....+.|..+++
T Consensus 256 ~~~~~~v~~~d~~G----------~~~~~~~~~~g~~~~~~~~~~~-~-~g~L~v~~~~~~~i~~~~~ 311 (322)
T 2fp8_A 256 GRVDPKGIKFDEFG----------NILEVIPLPPPFAGEHFEQIQE-H-DGLLYIGTLFHGSVGILVY 311 (322)
T ss_dssp SCEEEEEEEECTTS----------CEEEEEECCTTTTTSCCCEEEE-E-TTEEEEECSSCSEEEEEEC
T ss_pred CCCccEEEEECCCC----------CEEEEEECCCCCccccceEEEE-e-CCEEEEeecCCCceEEEec
Confidence 46677887643 222222211 234566655 3 5655555557788888875
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=2e-07 Score=72.97 Aligned_cols=217 Identities=9% Similarity=-0.073 Sum_probs=127.6
Q ss_pred cEEEEeecCCC--CeEEEEEecCCCEEEEEeC--CCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEE-EEEcC
Q 018858 49 DVQLVTDVGNG--PVTSLCFKSGNEDIIYVSS--GKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFL-ACADD 123 (349)
Q Consensus 49 ~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~ 123 (349)
+.+.++. |.. ....++|++++...++.+. ++.|.++|+.+++....+.. .. ......+++. ++.+ ++.-.
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l-~~-~~fgeGi~~~--g~~lyv~t~~ 84 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKM-DD-SYFGEGLTLL--NEKLYQVVWL 84 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEEC-CT-TCCEEEEEEE--TTEEEEEETT
T ss_pred eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEec-CC-CcceEEEEEe--CCEEEEEEec
Confidence 3455665 443 3689999998644444443 57999999998865544332 11 1122345554 4444 45556
Q ss_pred CCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCC
Q 018858 124 GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD 203 (349)
Q Consensus 124 dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 203 (349)
++.+.++|..+.+.+.++..+ .. ....+++ +++.++++..+
T Consensus 85 ~~~v~viD~~t~~v~~~i~~g-~~--~g~glt~------------------------------------Dg~~l~vs~gs 125 (266)
T 2iwa_A 85 KNIGFIYDRRTLSNIKNFTHQ-MK--DGWGLAT------------------------------------DGKILYGSDGT 125 (266)
T ss_dssp CSEEEEEETTTTEEEEEEECC-SS--SCCEEEE------------------------------------CSSSEEEECSS
T ss_pred CCEEEEEECCCCcEEEEEECC-CC--CeEEEEE------------------------------------CCCEEEEECCC
Confidence 789999999999998888722 11 2233455 55556666678
Q ss_pred CeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEE
Q 018858 204 GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLI 283 (349)
Q Consensus 204 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~ 283 (349)
+.|.++|..+.+...... +..-...-..++.+.+. +++..+
T Consensus 126 ~~l~viD~~t~~v~~~I~-----------------------------------Vg~~~~p~~~~nele~~----dg~lyv 166 (266)
T 2iwa_A 126 SILYEIDPHTFKLIKKHN-----------------------------------VKYNGHRVIRLNELEYI----NGEVWA 166 (266)
T ss_dssp SEEEEECTTTCCEEEEEE-----------------------------------CEETTEECCCEEEEEEE----TTEEEE
T ss_pred CeEEEEECCCCcEEEEEE-----------------------------------ECCCCcccccceeEEEE----CCEEEE
Confidence 999999998743211110 00000011246788876 566666
Q ss_pred EeeCCCeEEEEecCCCcceecccccceeee--cc--ccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 284 SGGNDKLVKVWDCSRFQGVQTSINNDLLIK--NI--NLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 284 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~--~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
....++.|.+.|..+++.........+... .. .-....+.+++.|...++++++...+.+.+-++
T Consensus 167 n~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l 235 (266)
T 2iwa_A 167 NIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKL 235 (266)
T ss_dssp EETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred ecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEE
Confidence 666678999999999854321110000000 00 011356899999844456666667788877654
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.08 E-value=1.8e-08 Score=87.00 Aligned_cols=261 Identities=10% Similarity=-0.014 Sum_probs=138.9
Q ss_pred cCCCceEEEe-CCCCcEEEEECCCCcEEEEeecC-CCCeEEEEE-e-cCCCEEEEEeC------------------CCeE
Q 018858 25 RDRPGFVASS-GEDGCICWFDLRSKDVQLVTDVG-NGPVTSLCF-K-SGNEDIIYVSS------------------GKEV 82 (349)
Q Consensus 25 ~~~~~~l~t~-~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~-~-~~~~~l~~~~~------------------dg~i 82 (349)
+| |++++.. ..++.|.+-|+.+.+....+.-. ......+++ + |++++++++++ ++.+
T Consensus 99 ~D-G~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 99 YD-GRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EE-EEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred cC-CCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 35 5665554 44577999999999987755432 356888887 5 99999988852 3578
Q ss_pred EEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCC---------------cEEEEEcCCceEeceeccccc-
Q 018858 83 KSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGG---------------DVKIIDIRQHCLYKSLRAGHS- 146 (349)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---------------~i~i~d~~~~~~~~~~~~~~~- 146 (349)
.+.|.++.+....+.. . .....++++|+++++++.+.+. .|.++|....+. ..+.+..
T Consensus 178 tvID~~t~~v~~qI~V---g-g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~--~v~~Gk~~ 251 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLV---S-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK--AIAAGDYQ 251 (595)
T ss_dssp EEEETTTTEEEEEEEE---S-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH--HHHHTCSE
T ss_pred EEEECCCCeEEEEEEe---C-CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeE--eccCCCee
Confidence 9999987543333322 1 2345678999999998887553 245555432110 0000000
Q ss_pred --cceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEc-CCCeEEEEEccCceeeeecCCC
Q 018858 147 --SICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESELNISRSKST 223 (349)
Q Consensus 147 --~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~ 223 (349)
+.|.-+..... ..........-....+++.++| ||+++++++ .+.+|.++|+.+.+....-.
T Consensus 252 ~i~~V~VID~~~~-------~~~~~~~~Ipvg~~PhGv~~sP------DGk~v~V~~~~s~~VsVid~~~~~~~~~~~-- 316 (595)
T 1fwx_A 252 ELNGVKVVDGRKE-------ASSLFTRYIPIANNPHGCNMAP------DKKHLCVAGKLSPTVTVLDVTRFDAVFYEN-- 316 (595)
T ss_dssp EETTEEEEECSGG-------GCCSSEEEEEEESSCCCEEECT------TSSEEEEECTTSSBEEEEEGGGHHHHHHSC--
T ss_pred EECcEEEEeCccc-------CCceeEEEEecCCCceEEEEcC------CCCEEEEeCCCCCeEEEEECcccccccccc--
Confidence 00111100000 0000000011112345556665 888777665 67899999999632110000
Q ss_pred CCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCccee
Q 018858 224 TKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ 303 (349)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 303 (349)
+.++. .......- ......++|+ ++|...++.-.|+.|.+||+.......
T Consensus 317 ---------l~~~~-----------------~v~~~v~v-G~gP~h~aF~---~dG~aY~t~~ldsqV~kwdi~~a~~~~ 366 (595)
T 1fwx_A 317 ---------ADPRS-----------------AVVAEPEL-GLGPLHTAFD---GRGNAYTSLFLDSQVVKWNIEDAIRAY 366 (595)
T ss_dssp ---------CCGGG-----------------GEEECCBC-CSCEEEEEEC---TTSEEEEEETTTTEEEEEEHHHHHHHH
T ss_pred ---------cCccc-----------------ceEEEcCC-CCCcceEEEC---CCCeEEEEEecCCcEEEEEhhHhhhhh
Confidence 00111 11122222 2346789999 899555566789999999997721000
Q ss_pred cc-cccceeeeccccccc-----eEEEEeecCCCCcEEEee
Q 018858 304 TS-INNDLLIKNINLNKK-----VNWLCTTPTESENLVVCD 338 (349)
Q Consensus 304 ~~-~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~l~~~~ 338 (349)
.. ...+.+....-|-.+ -..+...| ||++|+++.
T Consensus 367 ~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~-DGk~l~~~N 406 (595)
T 1fwx_A 367 AGEKVDPIKDKLDVHYQPGHLKTVMGETLDA-TNDWLVCLS 406 (595)
T ss_dssp HTCSCCCEEEEEECSSCEEEEEETTTTSTTC-CSSEEEEEE
T ss_pred cccccceeEEEeecccccccceeccceEeCC-CCCEEEEcC
Confidence 00 000333333333221 12223445 899988884
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.4e-07 Score=73.79 Aligned_cols=215 Identities=10% Similarity=0.058 Sum_probs=134.6
Q ss_pred CCCCeeeeCCce--eeeEEEEecCCCceEEEeCC--CCcEEEEECCCCcEEEEeecCCC-CeEEEEEecCCCEEEEEe-C
Q 018858 5 EAKPRRLRGHKA--TATCCIASRDRPGFVASSGE--DGCICWFDLRSKDVQLVTDVGNG-PVTSLCFKSGNEDIIYVS-S 78 (349)
Q Consensus 5 ~~~~~~l~~h~~--~i~~~~~~~~~~~~l~t~~~--dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~-~ 78 (349)
.+.++++. |.. ....+.|+++ +.++++.+. ++.|.+.|+.+++.+..+..... ....+++. ++.|+.+. .
T Consensus 9 ~~vv~~~p-~~~~~f~~Gl~~~~d-g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~ 84 (266)
T 2iwa_A 9 VEVLNEFP-HDPYAFTQGLVYAEN-DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWL 84 (266)
T ss_dssp EEEEEEEE-CCTTCCEEEEEECST-TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETT
T ss_pred ceEEEEEE-CCCCCCcccEEEeCC-CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEec
Confidence 34556664 443 3578999987 655555543 57999999999999888764322 22345554 55665554 5
Q ss_pred CCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccc-c---ceeEEEE
Q 018858 79 GKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHS-S---ICSSVQF 154 (349)
Q Consensus 79 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~---~v~~~~~ 154 (349)
++.+.++|..+.+....+.. .... ...++++++.++++..++.|.++|..+.+.+..+.-+.. . .+..+.|
T Consensus 85 ~~~v~viD~~t~~v~~~i~~---g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~ 159 (266)
T 2iwa_A 85 KNIGFIYDRRTLSNIKNFTH---QMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEY 159 (266)
T ss_dssp CSEEEEEETTTTEEEEEEEC---CSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred CCEEEEEECCCCcEEEEEEC---CCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEE
Confidence 78999999987644433322 1011 233556787777777788999999999888777662111 1 2445555
Q ss_pred ccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeee
Q 018858 155 IPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTS 234 (349)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 234 (349)
. ++..++....++.|.+.|..+++......-.
T Consensus 160 ~-------------------------------------dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~----------- 191 (266)
T 2iwa_A 160 I-------------------------------------NGEVWANIWQTDCIARISAKDGTLLGWILLP----------- 191 (266)
T ss_dssp E-------------------------------------TTEEEEEETTSSEEEEEETTTCCEEEEEECH-----------
T ss_pred E-------------------------------------CCEEEEecCCCCeEEEEECCCCcEEEEEECC-----------
Confidence 4 3555555556789999999986432221100
Q ss_pred ccccEEEEeeeeeecCceeeeeeee--ec--CCCcceEEEEEeeecCCcc-EEEEeeCCCeEEEEecCCC
Q 018858 235 KVNIRDAEMEILDQSGGKRLHLDYS--VG--GHTAAASCVAFSMFGERGK-YLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~h~~~i~~i~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~ 299 (349)
.+... .. ......+.|+++ |+++ +++++...+.|++.++...
T Consensus 192 --------------------g~~~~~~~~~~~~~~v~nGIa~~---~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 192 --------------------NLRKKLIDEGFRDIDVLNGIAWD---QENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp --------------------HHHHHHHHTTCTTCCCEEEEEEE---TTTTEEEEEETTCSEEEEEEEEEC
T ss_pred --------------------CcccccccccccccCceEEEEEc---CCCCEEEEECCCCCeEEEEEEecc
Confidence 00000 00 011356899999 7765 5667777899999998764
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.05 E-value=8.3e-07 Score=69.03 Aligned_cols=169 Identities=7% Similarity=0.051 Sum_probs=112.1
Q ss_pred eeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeec-CCCCeEEEEEecCCCEEEEEeCCCeEEEEEc
Q 018858 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDV-GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDV 87 (349)
Q Consensus 9 ~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 87 (349)
+.|.+-.+.+..++++|+++.++++...++.|...|.. ++.+..+.. .......+++.+++.++++.-.++.+.++++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 34556567899999999855566667778999999998 887777653 2356788999988877666556788999988
Q ss_pred cCCCcccceeec------cCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCC---ceEeceec------cccccceeEE
Q 018858 88 HMPASWRPLESY------NYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ---HCLYKSLR------AGHSSICSSV 152 (349)
Q Consensus 88 ~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~------~~~~~~v~~~ 152 (349)
........+... .........++|+|.++.|.++.+.....+|.+.. ...+..+. ..+...+.++
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 754322211111 11234578999999997777777665556665541 11111111 0122345667
Q ss_pred EEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC
Q 018858 153 QFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 213 (349)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 213 (349)
+++|. .+++++.......|..+|...
T Consensus 179 ~~dp~-----------------------------------tg~lliLS~~s~~L~~~d~~g 204 (255)
T 3qqz_A 179 EFNQQ-----------------------------------KNTLLVLSHESRALQEVTLVG 204 (255)
T ss_dssp EEETT-----------------------------------TTEEEEEETTTTEEEEECTTC
T ss_pred EEcCC-----------------------------------CCeEEEEECCCCeEEEEcCCC
Confidence 77764 677888888888999999875
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=99.04 E-value=2.4e-07 Score=71.65 Aligned_cols=202 Identities=8% Similarity=0.012 Sum_probs=118.8
Q ss_pred EEEEeecCCCC--eEEEEEecCCCEEEEEeCCC--eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEE-EcCC
Q 018858 50 VQLVTDVGNGP--VTSLCFKSGNEDIIYVSSGK--EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLAC-ADDG 124 (349)
Q Consensus 50 ~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d 124 (349)
.+.+++ |... ...+.|+ ++.+..+.+.+| .|+++|+++++....+.. . .......+.++++.|.. .-.+
T Consensus 33 vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l-~---~~~FgeGit~~g~~ly~ltw~~ 106 (262)
T 3nol_A 33 IVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIEL-G---KRYFGEGISDWKDKIVGLTWKN 106 (262)
T ss_dssp EEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEEC-C---TTCCEEEEEEETTEEEEEESSS
T ss_pred EEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEec-C---CccceeEEEEeCCEEEEEEeeC
Confidence 455664 5433 4788998 666666666665 899999998865544432 1 22322222233445544 4457
Q ss_pred CcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCC
Q 018858 125 GDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG 204 (349)
Q Consensus 125 g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 204 (349)
+.+.+||..+.+.+.++. .. . ....+.+ +++.|+.+..++
T Consensus 107 ~~v~v~D~~t~~~~~ti~-~~-~--eG~glt~------------------------------------dg~~L~~SdGs~ 146 (262)
T 3nol_A 107 GLGFVWNIRNLRQVRSFN-YD-G--EGWGLTH------------------------------------NDQYLIMSDGTP 146 (262)
T ss_dssp SEEEEEETTTCCEEEEEE-CS-S--CCCCEEE------------------------------------CSSCEEECCSSS
T ss_pred CEEEEEECccCcEEEEEE-CC-C--CceEEec------------------------------------CCCEEEEECCCC
Confidence 899999999999999888 22 2 2223334 566666666688
Q ss_pred eEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCC-CcceEEEEEeeecCCccEEE
Q 018858 205 VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGH-TAAASCVAFSMFGERGKYLI 283 (349)
Q Consensus 205 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~i~~i~~~~~~~~~~~l~ 283 (349)
.|.++|..+.+...... -...+. -..++.+.+. +|+..+
T Consensus 147 ~i~~iDp~T~~v~~~I~------------------------------------V~~~g~~~~~lNELe~~----~G~lya 186 (262)
T 3nol_A 147 VLRFLDPESLTPVRTIT------------------------------------VTAHGEELPELNELEWV----DGEIFA 186 (262)
T ss_dssp EEEEECTTTCSEEEEEE------------------------------------CEETTEECCCEEEEEEE----TTEEEE
T ss_pred eEEEEcCCCCeEEEEEE------------------------------------eccCCccccccceeEEE----CCEEEE
Confidence 99999998753211110 001111 1345677776 677666
Q ss_pred EeeCCCeEEEEecCCCcceecccccceeee---ccccccceEEEEeecCCCCcEEEe
Q 018858 284 SGGNDKLVKVWDCSRFQGVQTSINNDLLIK---NINLNKKVNWLCTTPTESENLVVC 337 (349)
Q Consensus 284 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~l~~~ 337 (349)
..-.++.|.+.|..+++......-..+... ...-....+.||+.|....+++||
T Consensus 187 n~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 187 NVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred EEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 666788999999999865432211111100 011124679999998544444444
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.01 E-value=6.6e-07 Score=74.73 Aligned_cols=200 Identities=10% Similarity=0.023 Sum_probs=119.5
Q ss_pred cCCCEEEEEe-CCCeEEEEEccCC-Ccccceeecc-------CcccceEEEEEccCCCEEEEEcCC------CcEEEEEc
Q 018858 68 SGNEDIIYVS-SGKEVKSFDVHMP-ASWRPLESYN-------YNKEEINQIVCNPKSSFLACADDG------GDVKIIDI 132 (349)
Q Consensus 68 ~~~~~l~~~~-~dg~i~iwd~~~~-~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~ 132 (349)
+++++|+..+ .++.|.++|+.+. ...+..+.+. ........+...|++ .++++..+ |.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 7788776654 6789999999753 2223333331 011245567888999 66665554 68999999
Q ss_pred CCceEeceeccccc--cceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEc---------
Q 018858 133 RQHCLYKSLRAGHS--SICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK--------- 201 (349)
Q Consensus 133 ~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------- 201 (349)
++.+++.++..+.. .--+.+-|+| +++.+++..
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p------------------------------------~~~~mvsS~wg~p~~~~~ 215 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNL------------------------------------PNEVLVSSEWAVPNTIED 215 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEET------------------------------------TTTEEEECBCCCHHHHTT
T ss_pred CCCeEEEEEccCCCCccccceEEECC------------------------------------CCCEEEEccCcCcccccc
Confidence 99999888762211 2234577788 677777764
Q ss_pred ----------CCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecC--CCcceEE
Q 018858 202 ----------GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGG--HTAAASC 269 (349)
Q Consensus 202 ----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~i~~ 269 (349)
.+.+|.+||+.+++.. .++.- .......
T Consensus 216 g~~~~~~~~~~~d~V~v~D~~~~k~~----------------------------------------~tI~vg~~g~~P~~ 255 (462)
T 2ece_A 216 GLKLEHLKDRYGNRIHFWDLRKRKRI----------------------------------------HSLTLGEENRMALE 255 (462)
T ss_dssp CCCTTTHHHHSCCEEEEEETTTTEEE----------------------------------------EEEESCTTEEEEEE
T ss_pred ccchhhhhhccCCEEEEEECCCCcEe----------------------------------------eEEecCCCCCccce
Confidence 3689999999875322 22221 1123344
Q ss_pred EEE--eeecCCccEEEEee------CCCeEEEEecCCCcceecc----cccceeeec-------cccccceEEEEeecCC
Q 018858 270 VAF--SMFGERGKYLISGG------NDKLVKVWDCSRFQGVQTS----INNDLLIKN-------INLNKKVNWLCTTPTE 330 (349)
Q Consensus 270 i~~--~~~~~~~~~l~s~~------~d~~i~vwd~~~~~~~~~~----~~~~~~~~~-------~~~~~~v~~~~~~~~~ 330 (349)
+.| + |++++++.++ .+++|.+|..+.+.-.... ...+....+ .+-......+.+++ |
T Consensus 256 i~f~~~---Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~-D 331 (462)
T 2ece_A 256 LRPLHD---PTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISL-D 331 (462)
T ss_dssp EEECSS---TTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECT-T
T ss_pred eEeeEC---CCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECC-C
Confidence 545 6 7787776665 3467777666542210000 000000000 00124577888987 8
Q ss_pred CCcEEEee-CCCeEEEeeC
Q 018858 331 SENLVVCD-TSKVVKVYSI 348 (349)
Q Consensus 331 ~~~l~~~~-~dg~i~iw~~ 348 (349)
+++|+++. ..+.|.++|+
T Consensus 332 GrfLYVSnrg~d~VavfdV 350 (462)
T 2ece_A 332 DKFLYLSLWGIGEVRQYDI 350 (462)
T ss_dssp SCEEEEEETTTTEEEEEEC
T ss_pred CCEEEEEeCCCCEEEEEEe
Confidence 88888886 4689999987
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.00 E-value=9.3e-08 Score=86.39 Aligned_cols=184 Identities=8% Similarity=0.022 Sum_probs=124.7
Q ss_pred EEEEecCCCceEEEeCCCCc-------------------EEEEECCCCcEEEEeec--CC-------CCeEEEEEecCCC
Q 018858 20 CCIASRDRPGFVASSGEDGC-------------------ICWFDLRSKDVQLVTDV--GN-------GPVTSLCFKSGNE 71 (349)
Q Consensus 20 ~~~~~~~~~~~l~t~~~dg~-------------------i~vwd~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~ 71 (349)
.++++|+ ..+++.+..++. |..+|.++++.+..++. |. .++.......+|+
T Consensus 239 ~~~~d~~-~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~ 317 (689)
T 1yiq_A 239 SFAYDPE-LNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGK 317 (689)
T ss_dssp CEEEETT-TTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred ceeEcCC-CCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCc
Confidence 5788887 678888877763 99999999999888764 21 1222223333565
Q ss_pred ---EEEEEeCCCeEEEEEccCCCcccceeecc-------------------------Cccc-----------ceEEEEEc
Q 018858 72 ---DIIYVSSGKEVKSFDVHMPASWRPLESYN-------------------------YNKE-----------EINQIVCN 112 (349)
Q Consensus 72 ---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------------------------~~~~-----------~v~~~~~~ 112 (349)
.++.++.+|.++++|.++++.+....... .... .-..++++
T Consensus 318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~d 397 (689)
T 1yiq_A 318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYN 397 (689)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEE
T ss_pred EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceEC
Confidence 78889999999999999886542111100 0000 01126788
Q ss_pred cCCCEEEEEcC---------------------------------------------CCcEEEEEcCCceEeceecccccc
Q 018858 113 PKSSFLACADD---------------------------------------------GGDVKIIDIRQHCLYKSLRAGHSS 147 (349)
Q Consensus 113 ~~~~~l~~~~~---------------------------------------------dg~i~i~d~~~~~~~~~~~~~~~~ 147 (349)
|+..++++... +|.|+.||+.+++.+.+++ .+ .
T Consensus 398 p~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~-~ 475 (689)
T 1yiq_A 398 PDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVP-YV-T 475 (689)
T ss_dssp TTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEE-ES-S
T ss_pred CCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEcc-CC-C
Confidence 88777776522 3678889999988887776 22 2
Q ss_pred ceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCc
Q 018858 148 ICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPL 227 (349)
Q Consensus 148 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 227 (349)
+...-.+.. .+.++++++.||.|+.||.++++.+-.........
T Consensus 476 ~~~~g~~~t------------------------------------agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~ 519 (689)
T 1yiq_A 476 IFNGGTLST------------------------------------AGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVM 519 (689)
T ss_dssp SCCCCEEEE------------------------------------TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred CccCccceE------------------------------------CCCEEEEECCCCcEEEEECCCCccceeeeCCCCcc
Confidence 222223333 57788899999999999999998887776665555
Q ss_pred cceeeeeccccEEEE
Q 018858 228 KGSQSTSKVNIRDAE 242 (349)
Q Consensus 228 ~~~~~~~~~~~~~~~ 242 (349)
..-+.+..+|+..++
T Consensus 520 ~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 520 AAPVTYSVDGEQYVT 534 (689)
T ss_dssp SCCEEEEETTEEEEE
T ss_pred cCceEEEECCEEEEE
Confidence 566788888886654
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.99 E-value=1e-06 Score=67.60 Aligned_cols=203 Identities=11% Similarity=0.008 Sum_probs=119.1
Q ss_pred EEEEeecCC--CCeEEEEEecCCCEEEEEeCC--CeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCC
Q 018858 50 VQLVTDVGN--GPVTSLCFKSGNEDIIYVSSG--KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGG 125 (349)
Q Consensus 50 ~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 125 (349)
.+.+++ |. .....+.|++ +....+.+.. ..|+.+|+++++....+..-. . ..-..+++.. ++.....-.++
T Consensus 11 v~~~~p-hd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~-~-~fgeGi~~~~-~~ly~ltw~~~ 85 (243)
T 3mbr_X 11 VVKRYP-HDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPP-P-YFGAGIVAWR-DRLIQLTWRNH 85 (243)
T ss_dssp EEEEEE-CCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT-T-CCEEEEEEET-TEEEEEESSSS
T ss_pred EEEEcC-CCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC-C-cceeEEEEeC-CEEEEEEeeCC
Confidence 455554 44 4466899986 5555555654 489999999886554443211 1 1112334332 33444455688
Q ss_pred cEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCe
Q 018858 126 DVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGV 205 (349)
Q Consensus 126 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 205 (349)
.+.+||.++.+.+.+++ .. ..-..++ + ++..|+++..++.
T Consensus 86 ~v~v~D~~tl~~~~ti~-~~-~~Gwglt--~------------------------------------dg~~L~vSdgs~~ 125 (243)
T 3mbr_X 86 EGFVYDLATLTPRARFR-YP-GEGWALT--S------------------------------------DDSHLYMSDGTAV 125 (243)
T ss_dssp EEEEEETTTTEEEEEEE-CS-SCCCEEE--E------------------------------------CSSCEEEECSSSE
T ss_pred EEEEEECCcCcEEEEEe-CC-CCceEEe--e------------------------------------CCCEEEEECCCCe
Confidence 99999999999999988 22 2223333 4 4556666667899
Q ss_pred EEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecC-CCcceEEEEEeeecCCccEEEE
Q 018858 206 VDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGG-HTAAASCVAFSMFGERGKYLIS 284 (349)
Q Consensus 206 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~i~~~~~~~~~~~l~s 284 (349)
|.++|..+.+....... ...+ .-..++.+.+. +|+..+.
T Consensus 126 l~~iDp~t~~~~~~I~V------------------------------------~~~g~~~~~lNeLe~~----~G~lyan 165 (243)
T 3mbr_X 126 IRKLDPDTLQQVGSIKV------------------------------------TAGGRPLDNLNELEWV----NGELLAN 165 (243)
T ss_dssp EEEECTTTCCEEEEEEC------------------------------------EETTEECCCEEEEEEE----TTEEEEE
T ss_pred EEEEeCCCCeEEEEEEE------------------------------------ccCCcccccceeeEEe----CCEEEEE
Confidence 99999987532211100 0011 11345777775 7776666
Q ss_pred eeCCCeEEEEecCCCcceecccccceeeec----cccccceEEEEeecCCCCcEEEe
Q 018858 285 GGNDKLVKVWDCSRFQGVQTSINNDLLIKN----INLNKKVNWLCTTPTESENLVVC 337 (349)
Q Consensus 285 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~ 337 (349)
.-.+..|.+.|..+++......-..+.... ..-.+..+.||+.|...++++||
T Consensus 166 vw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 166 VWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp ETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred ECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 656789999999998654322211111100 11234679999999555555555
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.97 E-value=9e-07 Score=68.45 Aligned_cols=202 Identities=8% Similarity=-0.083 Sum_probs=122.4
Q ss_pred EEEEeecCCC--CeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcE
Q 018858 50 VQLVTDVGNG--PVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDV 127 (349)
Q Consensus 50 ~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 127 (349)
.+.++. |.. ....+.|+ ++.+..+.+.+|.|+++|+++++....+ +.. ......+++.. ++..+..-.++.+
T Consensus 45 Vv~~~p-hd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~-~~FgeGit~~g-~~Ly~ltw~~~~v 118 (268)
T 3nok_A 45 IIREYP-HATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLG-NIFAEGLASDG-ERLYQLTWTEGLL 118 (268)
T ss_dssp EEEEEE-CCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECT-TCCEEEEEECS-SCEEEEESSSCEE
T ss_pred EEEEEc-CCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCC-CcceeEEEEeC-CEEEEEEccCCEE
Confidence 445554 443 34788887 3566667778889999999998766555 321 11122345432 2344444568899
Q ss_pred EEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEE
Q 018858 128 KIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVD 207 (349)
Q Consensus 128 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 207 (349)
.+||.++.+.+.++. . ...-..++ + +++.|+.+..++.|.
T Consensus 119 ~V~D~~Tl~~~~ti~-~-~~eGwGLt--~------------------------------------Dg~~L~vSdGs~~l~ 158 (268)
T 3nok_A 119 FTWSGMPPQRERTTR-Y-SGEGWGLC--Y------------------------------------WNGKLVRSDGGTMLT 158 (268)
T ss_dssp EEEETTTTEEEEEEE-C-SSCCCCEE--E------------------------------------ETTEEEEECSSSEEE
T ss_pred EEEECCcCcEEEEEe-C-CCceeEEe--c------------------------------------CCCEEEEECCCCEEE
Confidence 999999999999888 2 22223343 3 566777777789999
Q ss_pred EEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecC-CCcceEEEEEeeecCCccEEEEee
Q 018858 208 VINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGG-HTAAASCVAFSMFGERGKYLISGG 286 (349)
Q Consensus 208 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~i~~~~~~~~~~~l~s~~ 286 (349)
++|..+.+....... ...+ .-..++.+.|. +|+..+..-
T Consensus 159 ~iDp~T~~v~~~I~V------------------------------------~~~g~~v~~lNeLe~~----dG~lyanvw 198 (268)
T 3nok_A 159 FHEPDGFALVGAVQV------------------------------------KLRGQPVELINELECA----NGVIYANIW 198 (268)
T ss_dssp EECTTTCCEEEEEEC------------------------------------EETTEECCCEEEEEEE----TTEEEEEET
T ss_pred EEcCCCCeEEEEEEe------------------------------------CCCCcccccccccEEe----CCEEEEEEC
Confidence 999987532211110 0010 11245778876 777666665
Q ss_pred CCCeEEEEecCCCcceecccccceeee----ccccccceEEEEeecCCCCcEEEe
Q 018858 287 NDKLVKVWDCSRFQGVQTSINNDLLIK----NINLNKKVNWLCTTPTESENLVVC 337 (349)
Q Consensus 287 ~d~~i~vwd~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~l~~~ 337 (349)
.+..|.+.|..+++......-..+... ...-.+..+.||+.|...++++||
T Consensus 199 ~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 199 HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 788999999999865432211111000 011224679999998555555555
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.94 E-value=5.1e-06 Score=67.35 Aligned_cols=237 Identities=12% Similarity=0.010 Sum_probs=134.0
Q ss_pred CCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCC-C-eEEE
Q 018858 7 KPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG-K-EVKS 84 (349)
Q Consensus 7 ~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g-~i~i 84 (349)
.+..+... .....++|+++ ++++++-..++.|..||... +....+. ....+..+++.++++.+++.... + .|..
T Consensus 24 ~~~~~p~~-~~pegia~~~~-g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~ 99 (306)
T 2p4o_A 24 IITSFPVN-TFLENLASAPD-GTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVS 99 (306)
T ss_dssp EEEEECTT-CCEEEEEECTT-SCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred EeEeCCCC-CCcceEEECCC-CCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEE
Confidence 34444332 45678899997 77777777789999999765 3333333 33568899999999865554332 2 4666
Q ss_pred EEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceE-eceecc--------ccccceeEEEEc
Q 018858 85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL-YKSLRA--------GHSSICSSVQFI 155 (349)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~--------~~~~~v~~~~~~ 155 (349)
++..+++. ..+..... ......++..+++..+++-..++.|+++|...++. +..... ..-.....+ +
T Consensus 100 ~d~~~g~~-~~~~~~~~-~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s 175 (306)
T 2p4o_A 100 LVKSDGTV-ETLLTLPD-AIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--K 175 (306)
T ss_dssp EECTTSCE-EEEEECTT-CSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--E
T ss_pred EcCCCCeE-EEEEeCCC-ccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--C
Confidence 77666542 22222211 12234455555555555555678899999765421 110000 000011122 3
Q ss_pred cCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEE-EEEcCCCeEEEEEccC-ceeeeecCCCCCCccceeee
Q 018858 156 PWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKIC-VVAKGDGVVDVINIES-ELNISRSKSTTKPLKGSQST 233 (349)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~ 233 (349)
| +++.| ++-...+.|..|++.. +..
T Consensus 176 ~------------------------------------dg~~lyv~d~~~~~I~~~~~~~~g~~----------------- 202 (306)
T 2p4o_A 176 R------------------------------------FGNFLYVSNTEKMLLLRIPVDSTDKP----------------- 202 (306)
T ss_dssp E------------------------------------ETTEEEEEETTTTEEEEEEBCTTSCB-----------------
T ss_pred c------------------------------------CCCEEEEEeCCCCEEEEEEeCCCCCC-----------------
Confidence 3 55544 4555678999999874 100
Q ss_pred eccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccce--e
Q 018858 234 SKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDL--L 311 (349)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~--~ 311 (349)
...+....+ .....++++ ++|+++++....+.|.++|.. + .. +
T Consensus 203 ------------------~~~~~~~~~----~~P~gi~vd---~dG~l~va~~~~~~V~~~~~~-G---------~~~~~ 247 (306)
T 2p4o_A 203 ------------------GEPEIFVEQ----TNIDDFAFD---VEGNLYGATHIYNSVVRIAPD-R---------STTII 247 (306)
T ss_dssp ------------------CCCEEEEES----CCCSSEEEB---TTCCEEEECBTTCCEEEECTT-C---------CEEEE
T ss_pred ------------------CccEEEecc----CCCCCeEEC---CCCCEEEEeCCCCeEEEECCC-C---------CEEEE
Confidence 000111111 234668888 899887777777899999975 3 22 1
Q ss_pred eeccccccceEEEEeec--CCCCcEEEeeC
Q 018858 312 IKNINLNKKVNWLCTTP--TESENLVVCDT 339 (349)
Q Consensus 312 ~~~~~~~~~v~~~~~~~--~~~~~l~~~~~ 339 (349)
.........+++++|.. ++++.|+.++.
T Consensus 248 ~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 248 AQAEQGVIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp ECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred eecccccCCceEEEEecccCCCCEEEEECC
Confidence 11222234678899972 36666666653
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=4.9e-06 Score=65.99 Aligned_cols=222 Identities=7% Similarity=0.004 Sum_probs=123.8
Q ss_pred eEEEeCCCCcEEEEECCCCcE-----EEEeecCCCCeEEEEEecCCCEEEEEe-CCCeEEEEEccCCCcccceeeccCcc
Q 018858 30 FVASSGEDGCICWFDLRSKDV-----QLVTDVGNGPVTSLCFKSGNEDIIYVS-SGKEVKSFDVHMPASWRPLESYNYNK 103 (349)
Q Consensus 30 ~l~t~~~dg~i~vwd~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~ 103 (349)
+|+.+.. +.|+.+++..... ...+......+..++|+++++.|+.+. ..+.|..++...... ..+ .....
T Consensus 3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~--~~~~~ 78 (267)
T 1npe_A 3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTI--IRQDL 78 (267)
T ss_dssp EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEE--ECTTC
T ss_pred EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-EEE--EECCC
Confidence 4444443 4688888765432 112222224578899999776666554 568999999875432 111 11122
Q ss_pred cceEEEEEccCCCEE-EEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEe
Q 018858 104 EEINQIVCNPKSSFL-ACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAI 182 (349)
Q Consensus 104 ~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (349)
.....+++++++..+ ++-...+.|.++++.......... ........++++|
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~-~~~~~P~~i~vd~-------------------------- 131 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFD-TGLVNPRGIVTDP-------------------------- 131 (267)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-SSCSSEEEEEEET--------------------------
T ss_pred CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEE-CCCCCccEEEEee--------------------------
Confidence 467899999976554 455567789999986432211122 1223467788887
Q ss_pred ecCcccccCCCCcEEEEEcC---CCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeee
Q 018858 183 AIPDADMLDKTNKICVVAKG---DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYS 259 (349)
Q Consensus 183 ~~~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (349)
++..|..+.. .+.|..+++..... ..+
T Consensus 132 ----------~~g~lyv~~~~~~~~~I~~~~~dg~~~--------------------------------------~~~-- 161 (267)
T 1npe_A 132 ----------VRGNLYWTDWNRDNPKIETSHMDGTNR--------------------------------------RIL-- 161 (267)
T ss_dssp ----------TTTEEEEEECCSSSCEEEEEETTSCCC--------------------------------------EEE--
T ss_pred ----------CCCEEEEEECCCCCcEEEEEecCCCCc--------------------------------------EEE--
Confidence 4444444432 36777777764210 011
Q ss_pred ecCCCcceEEEEEeeecCCccEE-EEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEee
Q 018858 260 VGGHTAAASCVAFSMFGERGKYL-ISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD 338 (349)
Q Consensus 260 ~~~h~~~i~~i~~~~~~~~~~~l-~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 338 (349)
..........++++ +++..| ++-...+.|.++|..... ....... ......++.. + ..|+.+.
T Consensus 162 ~~~~~~~P~gia~d---~~~~~lyv~d~~~~~I~~~~~~g~~---------~~~~~~~-~~~P~gi~~d--~-~~lyva~ 225 (267)
T 1npe_A 162 AQDNLGLPNGLTFD---AFSSQLCWVDAGTHRAECLNPAQPG---------RRKVLEG-LQYPFAVTSY--G-KNLYYTD 225 (267)
T ss_dssp ECTTCSCEEEEEEE---TTTTEEEEEETTTTEEEEEETTEEE---------EEEEEEC-CCSEEEEEEE--T-TEEEEEE
T ss_pred EECCCCCCcEEEEc---CCCCEEEEEECCCCEEEEEecCCCc---------eEEEecC-CCCceEEEEe--C-CEEEEEE
Confidence 11112356889998 766555 444566889999987532 1111111 1233556542 3 3555554
Q ss_pred -CCCeEEEeeC
Q 018858 339 -TSKVVKVYSI 348 (349)
Q Consensus 339 -~dg~i~iw~~ 348 (349)
..+.|..+|.
T Consensus 226 ~~~~~v~~~d~ 236 (267)
T 1npe_A 226 WKTNSVIAMDL 236 (267)
T ss_dssp TTTTEEEEEET
T ss_pred CCCCeEEEEeC
Confidence 5578877764
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.93 E-value=4e-07 Score=70.38 Aligned_cols=191 Identities=10% Similarity=0.059 Sum_probs=124.2
Q ss_pred CCeeeeCCc--eeeeEEEEecCCCceEEEeCCCC--cEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEe-CCCe
Q 018858 7 KPRRLRGHK--ATATCCIASRDRPGFVASSGEDG--CICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVS-SGKE 81 (349)
Q Consensus 7 ~~~~l~~h~--~~i~~~~~~~~~~~~l~t~~~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~ 81 (349)
.++++. |. .....+.|+ + +.++.+.+.+| .|+++|+++++.+..+.... ......+.+.++.|.... .++.
T Consensus 33 vv~~~p-hd~~~ftqGL~~~-~-~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~ 108 (262)
T 3nol_A 33 IVHSYP-HDTKAFTEGFFYR-N-GYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGL 108 (262)
T ss_dssp EEEEEE-CCTTCEEEEEEEE-T-TEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSE
T ss_pred EEEEec-CCCCcccceEEEE-C-CEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCE
Confidence 345553 43 335788888 5 66677777665 89999999999988876543 333333333456666555 5789
Q ss_pred EEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceecccc-ccc---eeEEEEccC
Q 018858 82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGH-SSI---CSSVQFIPW 157 (349)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~---v~~~~~~~~ 157 (349)
+.++|.++.+....+.. . . ....++++++.|+.+..++.|.++|..+.+.+..+.... ..+ +..+.|.
T Consensus 109 v~v~D~~t~~~~~ti~~---~-~--eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-- 180 (262)
T 3nol_A 109 GFVWNIRNLRQVRSFNY---D-G--EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-- 180 (262)
T ss_dssp EEEEETTTCCEEEEEEC---S-S--CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE--
T ss_pred EEEEECccCcEEEEEEC---C-C--CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE--
Confidence 99999998655444433 1 1 112334577777776667889999999988887766111 112 2345553
Q ss_pred CCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCC-----------CCC
Q 018858 158 KPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKST-----------TKP 226 (349)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----------~~~ 226 (349)
++..++..-.+..|.+.|.++++........ ...
T Consensus 181 -----------------------------------~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~ 225 (262)
T 3nol_A 181 -----------------------------------DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPID 225 (262)
T ss_dssp -----------------------------------TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCC
T ss_pred -----------------------------------CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCC
Confidence 4666655557889999999998876543221 123
Q ss_pred ccceeeeeccccEEEEee
Q 018858 227 LKGSQSTSKVNIRDAEME 244 (349)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~ 244 (349)
....++++|+++.+.++|
T Consensus 226 vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 226 VLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp CEEEEEEETTTTEEEEEE
T ss_pred ceEEEEEcCCCCEEEEEC
Confidence 457899999988777544
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.92 E-value=3.6e-07 Score=79.02 Aligned_cols=256 Identities=13% Similarity=0.058 Sum_probs=151.0
Q ss_pred EEEeCCCCcEEEEECCCCcEEEEeecC---------------------------------C------CCeEEEEEec---
Q 018858 31 VASSGEDGCICWFDLRSKDVQLVTDVG---------------------------------N------GPVTSLCFKS--- 68 (349)
Q Consensus 31 l~t~~~dg~i~vwd~~~~~~~~~~~~~---------------------------------~------~~v~~~~~~~--- 68 (349)
|.+|+..|.++|+-+.+++.+..+... . +.......|.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 678899999999999998887765321 0 1112244444
Q ss_pred --CCCEEEEEeC-CCeEEEEEccCCCcccceeeccCcccceEEEEE-c-cCCCEEEEEc------------------CCC
Q 018858 69 --GNEDIIYVSS-GKEVKSFDVHMPASWRPLESYNYNKEEINQIVC-N-PKSSFLACAD------------------DGG 125 (349)
Q Consensus 69 --~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~l~~~~------------------~dg 125 (349)
+|++++.... +..|.+.|+.+.+..+.+ .++. ......+++ . |+++++++++ .++
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii-~ip~-g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~ 175 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCDAIL-EIPN-AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN 175 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEE-ECSS-CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEeeEE-eCCC-CCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCc
Confidence 7888877665 568999999987655544 3321 245778887 5 8999998884 245
Q ss_pred cEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCC-
Q 018858 126 DVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG- 204 (349)
Q Consensus 126 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg- 204 (349)
.+.+.|..+.+...++. -. +....++++| +++++++.+.+.
T Consensus 176 ~vtvID~~t~~v~~qI~-Vg-g~pd~~~~sp------------------------------------dGk~~~vt~~~se 217 (595)
T 1fwx_A 176 VFTAVDADKWEVAWQVL-VS-GNLDNCDADY------------------------------------EGKWAFSTSYNSE 217 (595)
T ss_dssp EEEEEETTTTEEEEEEE-ES-SCCCCEEECS------------------------------------SSSEEEEEESCTT
T ss_pred eEEEEECCCCeEEEEEE-eC-CCccceEECC------------------------------------CCCEEEEEecCcc
Confidence 79999999998888877 22 2467788888 555555555332
Q ss_pred --------------eEEEEEccCceeeeecCCCCCCccceeeeeccccEEEE--eeeeeecCceeeee-eeeecCCCcce
Q 018858 205 --------------VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE--MEILDQSGGKRLHL-DYSVGGHTAAA 267 (349)
Q Consensus 205 --------------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~h~~~i 267 (349)
.|.++|..... .+.++|++... ..-.|..... ... +..+.. ....
T Consensus 218 ~~~~i~~~~~~~~d~v~V~~~~~~~----------------~~v~~Gk~~~i~~V~VID~~~~~-~~~~~~~Ipv-g~~P 279 (595)
T 1fwx_A 218 KGMTLPEMTAAEMDHIVVFNIAEIE----------------KAIAAGDYQELNGVKVVDGRKEA-SSLFTRYIPI-ANNP 279 (595)
T ss_dssp CCSSHHHHTCCSEEEEEEEEHHHHH----------------HHHHHTCSEEETTEEEEECSGGG-CCSSEEEEEE-ESSC
T ss_pred cCcchhhccccccceEEEeecccee----------------EeccCCCeeEECcEEEEeCcccC-CceeEEEEec-CCCc
Confidence 34444443211 01112211110 0000000000 011 112221 1234
Q ss_pred EEEEEeeecCCccEEEEee-CCCeEEEEecCCCcceec--ccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEE
Q 018858 268 SCVAFSMFGERGKYLISGG-NDKLVKVWDCSRFQGVQT--SINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVK 344 (349)
Q Consensus 268 ~~i~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 344 (349)
.++.++ |||+++++++ .+.+|.++|+.+.+.... ......+.....-......++|++ +|...++.-.|+.|.
T Consensus 280 hGv~~s---PDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~-dG~aY~t~~ldsqV~ 355 (595)
T 1fwx_A 280 HGCNMA---PDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDG-RGNAYTSLFLDSQVV 355 (595)
T ss_dssp CCEEEC---TTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECT-TSEEEEEETTTTEEE
T ss_pred eEEEEc---CCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECC-CCeEEEEEecCCcEE
Confidence 678899 9999887665 678999999996521000 000011222233445678889988 774344446899999
Q ss_pred EeeC
Q 018858 345 VYSI 348 (349)
Q Consensus 345 iw~~ 348 (349)
+||+
T Consensus 356 kwdi 359 (595)
T 1fwx_A 356 KWNI 359 (595)
T ss_dssp EEEH
T ss_pred EEEh
Confidence 9985
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.2e-05 Score=66.36 Aligned_cols=158 Identities=11% Similarity=0.008 Sum_probs=98.4
Q ss_pred eeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEE-EEeCCCeEEEEEccCCCcccc
Q 018858 17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDII-YVSSGKEVKSFDVHMPASWRP 95 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~ 95 (349)
....++|++.++.++++-...+.|..++.........+.........+++.+.+..|+ +-...+.|.+.++.... ...
T Consensus 74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-~~~ 152 (349)
T 3v64_C 74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-RKV 152 (349)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEE
T ss_pred ceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc-eEE
Confidence 3578899987455666666678899999886654443333334567889987655554 44556889999987432 122
Q ss_pred eeeccCcccceEEEEEccCCCEEE-EEcCC-CcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccc
Q 018858 96 LESYNYNKEEINQIVCNPKSSFLA-CADDG-GDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQC 173 (349)
Q Consensus 96 ~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 173 (349)
+ ..........+++.|.+..|+ +-... +.|..+++.......... ..-.....++++|+
T Consensus 153 l--~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~-~~~~~PnGla~d~~---------------- 213 (349)
T 3v64_C 153 L--LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD-THLFWPNGLTIDYA---------------- 213 (349)
T ss_dssp E--ECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCC-SSCSCEEEEEEETT----------------
T ss_pred E--EeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEE-CCCCCcceEEEeCC----------------
Confidence 2 111234578999998665554 44444 678888876432222122 22334677888873
Q ss_pred cCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC
Q 018858 174 YNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 213 (349)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 213 (349)
++.++++-...+.|..+|+..
T Consensus 214 -------------------~~~lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 214 -------------------GRRMYWVDAKHHVIERANLDG 234 (349)
T ss_dssp -------------------TTEEEEEETTTTEEEEEETTS
T ss_pred -------------------CCEEEEEECCCCEEEEEeCCC
Confidence 344555555678899999874
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.87 E-value=7.5e-06 Score=69.64 Aligned_cols=154 Identities=14% Similarity=0.129 Sum_probs=97.1
Q ss_pred eeeEEEEec-CCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCC----C-eEEEEEccCC
Q 018858 17 TATCCIASR-DRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG----K-EVKSFDVHMP 90 (349)
Q Consensus 17 ~i~~~~~~~-~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g-~i~iwd~~~~ 90 (349)
....++++| +++ .|+.+...+.|+.+|+..++..... ........+++++++++|+++... . .+...+.. +
T Consensus 138 ~P~~lavdp~~~g-~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHN-HLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-S 214 (430)
T ss_dssp CCCEEEEETTEEE-EEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-G
T ss_pred CCCEEEECCCCCC-eEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-C
Confidence 346789997 434 4554444488999998876644333 345668899999999977666542 1 34444433 2
Q ss_pred Ccc--cceeeccCcccceEEEEEcc-CCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCC
Q 018858 91 ASW--RPLESYNYNKEEINQIVCNP-KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENN 167 (349)
Q Consensus 91 ~~~--~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 167 (349)
... ..+.. ......++++| ++.++++-..++.|..++...+................++|+|
T Consensus 215 ~~~~~~~l~~----~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~p----------- 279 (430)
T 3tc9_A 215 GFKVITELTK----GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHP----------- 279 (430)
T ss_dssp TSCSEEEEEE----CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECT-----------
T ss_pred ceeeeeeecc----CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcC-----------
Confidence 211 12222 23467788999 6676666667788999998866542222211223467788888
Q ss_pred CCCccccCCceeEEeecCcccccCCCCc-EEEEEcCCCeEEEEEccC
Q 018858 168 GNAGQCYNPAFVHAIAIPDADMLDKTNK-ICVVAKGDGVVDVINIES 213 (349)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~ 213 (349)
+++ ++++-...+.|..++...
T Consensus 280 -------------------------dG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 280 -------------------------SGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp -------------------------TSSEEEEEETTTTEEEEEEEET
T ss_pred -------------------------CCCEEEEEECCCCEEEEEeCCc
Confidence 787 445555778899988763
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.87 E-value=9.3e-06 Score=68.07 Aligned_cols=159 Identities=12% Similarity=0.042 Sum_probs=98.0
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEE-EeCCCeEEEEEccCCCccc
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIY-VSSGKEVKSFDVHMPASWR 94 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~ 94 (349)
.....++|++.++.++++-...+.|..++.........+.........+++.+.+..|+. -...+.|.+.++.... ..
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~-~~ 194 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-RK 194 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS-CE
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc-eE
Confidence 446789999874666666667788999998866544433333345567888876555544 4556788888876432 12
Q ss_pred ceeeccCcccceEEEEEccCCCEEEEEc-CC-CcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCcc
Q 018858 95 PLESYNYNKEEINQIVCNPKSSFLACAD-DG-GDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQ 172 (349)
Q Consensus 95 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 172 (349)
.+ ..........+++.|.+..|+... .. +.|..+++.......... ..-.....++++|+
T Consensus 195 ~l--~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~-~~~~~PnGlavd~~--------------- 256 (386)
T 3v65_B 195 VL--LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD-THLFWPNGLTIDYA--------------- 256 (386)
T ss_dssp EE--ECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-SSCSCEEEEEEEGG---------------
T ss_pred Ee--ecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEE-CCCCCeeeEEEeCC---------------
Confidence 22 112235678999998766555443 34 678888876432222222 22334577888872
Q ss_pred ccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC
Q 018858 173 CYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 213 (349)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 213 (349)
.++++++-...+.|..+|+..
T Consensus 257 --------------------~~~lY~aD~~~~~I~~~d~dG 277 (386)
T 3v65_B 257 --------------------GRRMYWVDAKHHVIERANLDG 277 (386)
T ss_dssp --------------------GTEEEEEETTTTEEEEECTTS
T ss_pred --------------------CCEEEEEECCCCEEEEEeCCC
Confidence 344555555678898888864
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.86 E-value=2.5e-06 Score=65.37 Aligned_cols=191 Identities=12% Similarity=0.053 Sum_probs=121.6
Q ss_pred CCeeeeCCc--eeeeEEEEecCCCceEEEeCCC--CcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEE-eCCCe
Q 018858 7 KPRRLRGHK--ATATCCIASRDRPGFVASSGED--GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYV-SSGKE 81 (349)
Q Consensus 7 ~~~~l~~h~--~~i~~~~~~~~~~~~l~t~~~d--g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~ 81 (349)
.++++. |. .....+.|++ +.++.+.+.+ ..|+.+|+.+++.+..+..... .........++.|... -.++.
T Consensus 11 v~~~~p-hd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~-~fgeGi~~~~~~ly~ltw~~~~ 86 (243)
T 3mbr_X 11 VVKRYP-HDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP-YFGAGIVAWRDRLIQLTWRNHE 86 (243)
T ss_dssp EEEEEE-CCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT-CCEEEEEEETTEEEEEESSSSE
T ss_pred EEEEcC-CCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC-cceeEEEEeCCEEEEEEeeCCE
Confidence 445553 54 3467888885 4666666665 4899999999999888765432 2222223334555544 46889
Q ss_pred EEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccc-cc---cceeEEEEccC
Q 018858 82 VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAG-HS---SICSSVQFIPW 157 (349)
Q Consensus 82 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~---~~v~~~~~~~~ 157 (349)
+.++|.++.+....+.. . ..-..++ ++++.|+.+..++.|.++|..+.+.+..+... +. ..+..+.+.
T Consensus 87 v~v~D~~tl~~~~ti~~---~-~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-- 158 (243)
T 3mbr_X 87 GFVYDLATLTPRARFRY---P-GEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-- 158 (243)
T ss_dssp EEEEETTTTEEEEEEEC---S-SCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--
T ss_pred EEEEECCcCcEEEEEeC---C-CCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe--
Confidence 99999987654443332 1 2223444 56777776677889999999998887777611 11 123344443
Q ss_pred CCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCC------------CCC
Q 018858 158 KPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS------------TTK 225 (349)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------------~~~ 225 (349)
++..++..-.+..|.+.|.++++......- +..
T Consensus 159 -----------------------------------~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~ 203 (243)
T 3mbr_X 159 -----------------------------------NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTN 203 (243)
T ss_dssp -----------------------------------TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTS
T ss_pred -----------------------------------CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcC
Confidence 466565555678999999999877654321 122
Q ss_pred CccceeeeeccccEEEEee
Q 018858 226 PLKGSQSTSKVNIRDAEME 244 (349)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~ 244 (349)
.-...++++|+++.+.++|
T Consensus 204 ~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 204 DVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp SCEEEEEEETTTTEEEEEE
T ss_pred CceEEEEEcCCCCEEEEEC
Confidence 3457899999888777544
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.84 E-value=2.6e-06 Score=78.01 Aligned_cols=114 Identities=12% Similarity=0.073 Sum_probs=73.7
Q ss_pred eeeEEEEe-cCCCceEEEe-CCC----CcEEEEECCCC-cEEE-EeecCCCCeEEEEEecCCCEEEEEeCC-----CeEE
Q 018858 17 TATCCIAS-RDRPGFVASS-GED----GCICWFDLRSK-DVQL-VTDVGNGPVTSLCFKSGNEDIIYVSSG-----KEVK 83 (349)
Q Consensus 17 ~i~~~~~~-~~~~~~l~t~-~~d----g~i~vwd~~~~-~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~ 83 (349)
.+...+|| |+ +++|+-+ ..+ ..|+++|+.++ +.+. .+.. ....++|+|+++.|+....+ ..|.
T Consensus 175 ~~~~~~~S~PD-G~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~ 250 (751)
T 2xe4_A 175 DVMEVKPAPPE-HDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVW 250 (751)
T ss_dssp EEEEEEECTTT-TCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEE
T ss_pred EEeeeEecCCC-CCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEE
Confidence 67888999 98 7776633 222 35999999988 6321 1111 12357899999988887765 3688
Q ss_pred EEEccCCCcc-cceeeccCcccceEEEEEccCCCEEEEEcC---CCcEEEEEcCCc
Q 018858 84 SFDVHMPASW-RPLESYNYNKEEINQIVCNPKSSFLACADD---GGDVKIIDIRQH 135 (349)
Q Consensus 84 iwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~ 135 (349)
.+++.++... ..+.... .......+.|+|++++|+.... ...|+++|+.++
T Consensus 251 ~~~lgt~~~~~~lv~~~~-~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 251 RHVMGKLQSEDVCLYEEH-NPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp EEETTSCGGGCEEEEECC-CTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred EEECCCCchhcEEEEecC-CCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 8888765321 1221111 1234567899999998876553 345888898765
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.83 E-value=6.9e-07 Score=69.08 Aligned_cols=190 Identities=11% Similarity=0.033 Sum_probs=121.8
Q ss_pred CCeeeeCCce--eeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEE-eCCCeEE
Q 018858 7 KPRRLRGHKA--TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYV-SSGKEVK 83 (349)
Q Consensus 7 ~~~~l~~h~~--~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~ 83 (349)
.++++. |.. ....+.|+. +.+..+.+.+|.|+++|+++++.+..+ ... ........+.++.|... -.++.+.
T Consensus 45 Vv~~~p-hd~~~ftqGL~~~~--~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-~~FgeGit~~g~~Ly~ltw~~~~v~ 119 (268)
T 3nok_A 45 IIREYP-HATNAFTQGLVFHQ--GHFFESTGHQGTLRQLSLESAQPVWME-RLG-NIFAEGLASDGERLYQLTWTEGLLF 119 (268)
T ss_dssp EEEEEE-CCTTCCEEEEEEET--TEEEEEETTTTEEEECCSSCSSCSEEE-ECT-TCCEEEEEECSSCEEEEESSSCEEE
T ss_pred EEEEEc-CCCccccceEEEEC--CEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-CcceeEEEEeCCEEEEEEccCCEEE
Confidence 344553 432 356788873 577788888899999999999987766 322 33332223345555544 4678999
Q ss_pred EEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccc-ccc---ceeEEEEccCCC
Q 018858 84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAG-HSS---ICSSVQFIPWKP 159 (349)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~---~v~~~~~~~~~~ 159 (349)
++|.++.+....+.. . ..-..++ ++++.|+.+..++.|.++|..+.+.+..+... ... .+..+.|.
T Consensus 120 V~D~~Tl~~~~ti~~---~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~---- 189 (268)
T 3nok_A 120 TWSGMPPQRERTTRY---S-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA---- 189 (268)
T ss_dssp EEETTTTEEEEEEEC---S-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE----
T ss_pred EEECCcCcEEEEEeC---C-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe----
Confidence 999998654444432 1 2223344 56777777777889999999998888776611 111 23444544
Q ss_pred CCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCC------------CCCCc
Q 018858 160 WEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS------------TTKPL 227 (349)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------------~~~~~ 227 (349)
+|..++..-.+..|.+.|.++++......- ....-
T Consensus 190 ---------------------------------dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~v 236 (268)
T 3nok_A 190 ---------------------------------NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAV 236 (268)
T ss_dssp ---------------------------------TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCC
T ss_pred ---------------------------------CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCc
Confidence 366565555688999999999876654321 12234
Q ss_pred cceeeeeccccEEEEee
Q 018858 228 KGSQSTSKVNIRDAEME 244 (349)
Q Consensus 228 ~~~~~~~~~~~~~~~~~ 244 (349)
...++++|+++.+.++|
T Consensus 237 lNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 237 LNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEEEEECTTTCCEEEEE
T ss_pred eEEEEEcCCCCEEEEeC
Confidence 57899999877776544
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.5e-05 Score=67.74 Aligned_cols=266 Identities=8% Similarity=0.009 Sum_probs=138.0
Q ss_pred eeeEEEEecC-CCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCC----C-eEEEEEccCC
Q 018858 17 TATCCIASRD-RPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG----K-EVKSFDVHMP 90 (349)
Q Consensus 17 ~i~~~~~~~~-~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g-~i~iwd~~~~ 90 (349)
.-..++++|+ +...|+.+...+.|+.+|..+++.... .........++++++++ |+.+... . .+...+...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC
Confidence 3567899983 123444444338899999887765443 33445688999999999 5444432 1 2333332211
Q ss_pred Ccc-cceeeccCcccceEEEEEcc-CCCEEEEEcCCCcEEEEEcCCceEecee-ccccccceeEEEEccCCCCCCCCCCC
Q 018858 91 ASW-RPLESYNYNKEEINQIVCNP-KSSFLACADDGGDVKIIDIRQHCLYKSL-RAGHSSICSSVQFIPWKPWEGLPENN 167 (349)
Q Consensus 91 ~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~ 167 (349)
... ..+.. ......++++| ++.++++-..++.|+.+|..++.....+ ..+.......++|+|
T Consensus 218 ~~~~~~~~~----~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dp----------- 282 (433)
T 4hw6_A 218 FTERLSLCN----ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHP----------- 282 (433)
T ss_dssp TCCEEEEEE----CSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECT-----------
T ss_pred eeccccccc----cCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeC-----------
Confidence 100 11111 23456788999 6666666667788999998866652222 211122234578877
Q ss_pred CCCccccCCceeEEeecCcccccCCCCcE-EEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeee
Q 018858 168 GNAGQCYNPAFVHAIAIPDADMLDKTNKI-CVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEIL 246 (349)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (349)
+++. +++-...+.|+.+++........ ....++-.+ + .
T Consensus 283 -------------------------dG~~LYvad~~~~~I~~~~~d~~~~~~~-------~~~~~ag~~-g--------~ 321 (433)
T 4hw6_A 283 -------------------------TGDWAYIIYNGKHCIYRVDYNRETGKLA-------VPYIVCGQH-S--------S 321 (433)
T ss_dssp -------------------------TSSEEEEEETTTTEEEEEEBCTTTCCBC-------CCEEEEECT-T--------C
T ss_pred -------------------------CCCEEEEEeCCCCEEEEEeCCCCCcccC-------cEEEEEecC-C--------C
Confidence 6774 44555678899988763100000 000000000 0 0
Q ss_pred eecCceeeeeeeeecCCCcceEEEEE---------eeecCCccEEEEeeCCCeEEEEecCCCcceecccccc-----eee
Q 018858 247 DQSGGKRLHLDYSVGGHTAAASCVAF---------SMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINND-----LLI 312 (349)
Q Consensus 247 ~~~~~~~~~~~~~~~~h~~~i~~i~~---------~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-----~~~ 312 (349)
.+.. ... .....-.....+++ . +++.++++-...+.|+.++. .+.......... ...
T Consensus 322 ~g~~--dg~---~~~a~~~~P~giav~~n~~y~~dd---~~g~lyvaD~~n~~I~~~~~-~G~v~t~~G~g~~~~~G~~d 392 (433)
T 4hw6_A 322 PGWV--DGM---GTGARLWGPNQGIFVKNEAYAGEE---DEYDFYFCDRDSHTVRVLTP-EGRVTTYAGRGNSREWGYVD 392 (433)
T ss_dssp CCCB--CEE---GGGSBCSSEEEEEEEECGGGTTSS---CCEEEEEEETTTTEEEEECT-TSEEEEEECCCTTCSSCCBC
T ss_pred CccC--CCc---ccceEEcCCccEEEEccccccccC---CCCcEEEEECCCCEEEEECC-CCCEEEEEeCCCCCccccCC
Confidence 0000 000 00011124567888 5 67777777777889999985 332110000000 000
Q ss_pred ---eccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 313 ---KNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 313 ---~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.....-.....|++.|.++.++++=...+.|+..+++
T Consensus 393 G~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 393 GELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 0000112467899986577555544567888887753
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.81 E-value=8.6e-07 Score=79.86 Aligned_cols=153 Identities=12% Similarity=0.072 Sum_probs=97.6
Q ss_pred ceEEEeCCCCcEEEEECCCCcEEEEeecCC----CCeEE-EEEecCCCEEEEEeC------CCeEEEEEccCCCccccee
Q 018858 29 GFVASSGEDGCICWFDLRSKDVQLVTDVGN----GPVTS-LCFKSGNEDIIYVSS------GKEVKSFDVHMPASWRPLE 97 (349)
Q Consensus 29 ~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~----~~v~~-~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~ 97 (349)
..++.++.|+.|..+|..+++.+..+.... ..+.+ ..+ .+..++++.. +|.|..+|.++++......
T Consensus 118 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 118 DKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence 467778889999999999999988876521 11111 111 1334555542 5899999999887554443
Q ss_pred eccCc----------------------------ccceEEEEEccCCCEEEEEcCCC-------------------cEEEE
Q 018858 98 SYNYN----------------------------KEEINQIVCNPKSSFLACADDGG-------------------DVKII 130 (349)
Q Consensus 98 ~~~~~----------------------------~~~v~~~~~~~~~~~l~~~~~dg-------------------~i~i~ 130 (349)
..... ......+++.|+...++.++.++ .|..+
T Consensus 196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al 275 (668)
T 1kv9_A 196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI 275 (668)
T ss_dssp SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 21100 00112467888888888887765 39999
Q ss_pred EcCCceEeceeccc-cc-------cceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCc---EEEE
Q 018858 131 DIRQHCLYKSLRAG-HS-------SICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK---ICVV 199 (349)
Q Consensus 131 d~~~~~~~~~~~~~-~~-------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~ 199 (349)
|.++++.+..++.. |. .+.....+.. +++ .++.
T Consensus 276 D~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~------------------------------------~G~~~~~v~~ 319 (668)
T 1kv9_A 276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNI------------------------------------DGKPRKVLMQ 319 (668)
T ss_dssp CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE------------------------------------TTEEEEEEEE
T ss_pred cCCCCceeeEeecCCCccccccCCCCcEEEEecc------------------------------------CCcEEEEEEE
Confidence 99999988877621 11 0111111111 343 6889
Q ss_pred EcCCCeEEEEEccCceeeee
Q 018858 200 AKGDGVVDVINIESELNISR 219 (349)
Q Consensus 200 ~~~dg~i~i~d~~~~~~~~~ 219 (349)
++.+|.++++|.++++.+..
T Consensus 320 ~~~~G~l~~lD~~tG~~l~~ 339 (668)
T 1kv9_A 320 APKNGFFYVLDRTNGKLISA 339 (668)
T ss_dssp CCTTSEEEEEETTTCCEEEE
T ss_pred ECCCCEEEEEECCCCCEecc
Confidence 99999999999999876643
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=0.00012 Score=67.77 Aligned_cols=272 Identities=10% Similarity=0.006 Sum_probs=155.2
Q ss_pred eeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEe-ecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccce
Q 018858 18 ATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVT-DVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPL 96 (349)
Q Consensus 18 i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 96 (349)
|.++...++ +.+.+ +..++.|..|+..+++..... ......|.++...+++. |..++.++-|..||..+++. ...
T Consensus 175 i~~i~~d~~-g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lwigt~~~Gl~~~~~~~~~~-~~~ 250 (795)
T 4a2l_A 175 IASTLYRQG-DQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTR-IWVATEGAGLFLINPKTKEI-KNY 250 (795)
T ss_dssp CEEEEEEET-TEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTE-EEEEEBSSCEEEEETTTTEE-EEE
T ss_pred eEEEEECCC-CCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCC-EEEEECCCCeEEEeCCCCeE-EEe
Confidence 788888776 55444 555555899998776643321 12345788888877776 44555444488899875422 111
Q ss_pred eec-----cCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceec------cccccceeEEEEccCCCCCCCCC
Q 018858 97 ESY-----NYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR------AGHSSICSSVQFIPWKPWEGLPE 165 (349)
Q Consensus 97 ~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~ 165 (349)
... ......|.++...+++.+.+ |+.+ -|.+||..+++...... ......|.++...+
T Consensus 251 ~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~--------- 319 (795)
T 4a2l_A 251 LHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDS--------- 319 (795)
T ss_dssp CCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECT---------
T ss_pred ecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeC---------
Confidence 110 01235688998888776444 5555 58899987765432211 01224567776665
Q ss_pred CCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecC-----CCCCCccceeeeeccccEE
Q 018858 166 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK-----STTKPLKGSQSTSKVNIRD 240 (349)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 240 (349)
+|. |-+|+.++-|..|+........... ......+.++...++|...
T Consensus 320 ---------------------------~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lW 371 (795)
T 4a2l_A 320 ---------------------------QGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLW 371 (795)
T ss_dssp ---------------------------TSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEE
T ss_pred ---------------------------CcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEE
Confidence 565 5567777778899877654322211 1124457788888888877
Q ss_pred EEee--eeeecCce--eeeeeeee------cCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccce
Q 018858 241 AEME--ILDQSGGK--RLHLDYSV------GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDL 310 (349)
Q Consensus 241 ~~~~--~~~~~~~~--~~~~~~~~------~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 310 (349)
+... ........ .......- .-....|.++... ++++.|..|+.++-|..||..+++.
T Consensus 372 iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d---~~g~~lWigt~~~Gl~~~d~~~~~~--------- 439 (795)
T 4a2l_A 372 IGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVD---EKKSLVYIGTHAGGLSILHRNSGQV--------- 439 (795)
T ss_dssp EEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEE---TTTTEEEEEETTTEEEEEETTTCCE---------
T ss_pred EEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEc---CCCCEEEEEeCcCceeEEeCCCCcE---------
Confidence 6421 11111111 11111100 0113568899888 7887566677777799999887532
Q ss_pred eeecc----ccccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 311 LIKNI----NLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 311 ~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
..... .....|.++...+ ++. |..++.+| +.+|+
T Consensus 440 ~~~~~~~~~l~~~~v~~i~~d~-~g~-lwigt~~G-l~~~~ 477 (795)
T 4a2l_A 440 ENFNQRNSQLVNENVYAILPDG-EGN-LWLGTLSA-LVRFN 477 (795)
T ss_dssp EEECTTTSCCSCSCEEEEEECS-SSC-EEEEESSC-EEEEE
T ss_pred EEeecCCCCcCCCeeEEEEECC-CCC-EEEEecCc-eeEEe
Confidence 11111 2345688887755 554 44455544 66665
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.76 E-value=5.6e-05 Score=63.61 Aligned_cols=162 Identities=13% Similarity=0.060 Sum_probs=98.6
Q ss_pred CCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC----cEEEEeecCCCCeEEEEEecCCCEEE-EEeCCCeEEEEEc
Q 018858 13 GHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK----DVQLVTDVGNGPVTSLCFKSGNEDII-YVSSGKEVKSFDV 87 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~ 87 (349)
.....+..++|++.++.++++-...+.|+.+++... .....+.........+++.+.+..|+ +-...+.|.+.++
T Consensus 109 ~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~ 188 (400)
T 3p5b_L 109 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT 188 (400)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECT
T ss_pred cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeC
Confidence 344567889999874556666566788999988752 22333333445678899998555554 4456788999888
Q ss_pred cCCCcccceeeccCcccceEEEEEccCCCEEEEEc--CCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCC
Q 018858 88 HMPASWRPLESYNYNKEEINQIVCNPKSSFLACAD--DGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPE 165 (349)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 165 (349)
+... ...+.. ........+++.|.+.+|+... ..+.|...++.......... ..-.....++++++
T Consensus 189 ~g~~-~~~l~~--~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~-~~l~~P~glavd~~-------- 256 (400)
T 3p5b_L 189 KGVK-RKTLFR--ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT-ENIQWPNGITLDLL-------- 256 (400)
T ss_dssp TTCS-EEEEEE--CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC-SSCSCEEEEEEETT--------
T ss_pred CCCc-eEEEEe--CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE-CCCCceEEEEEEeC--------
Confidence 7432 222211 1234578999999766655443 24678888876433222222 22345677888872
Q ss_pred CCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC
Q 018858 166 NNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 213 (349)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 213 (349)
.++++++-...+.|..+|+..
T Consensus 257 ---------------------------~~~lY~aD~~~~~I~~~d~dG 277 (400)
T 3p5b_L 257 ---------------------------SGRLYWVDSKLHSISSIDVNG 277 (400)
T ss_dssp ---------------------------TTEEEEEETTTTEEEEEETTS
T ss_pred ---------------------------CCEEEEEECCCCEEEEEeCCC
Confidence 344444445677899999875
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=0.00015 Score=66.97 Aligned_cols=236 Identities=8% Similarity=0.063 Sum_probs=139.6
Q ss_pred ceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeec--------CCCCeEEEEEecCCCEEEEEeCCCeEEEEE
Q 018858 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDV--------GNGPVTSLCFKSGNEDIIYVSSGKEVKSFD 86 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 86 (349)
...|.++...++ +. |..|+.++-|..|+..+++....... ....|.++...++++.|..|+.++-|..+|
T Consensus 356 ~~~V~~i~~d~~-g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d 433 (795)
T 4a2l_A 356 DNVVSCIVEDKD-KN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILH 433 (795)
T ss_dssp CSSEEEEEECTT-SC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred CCeeEEEEECCC-CC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEe
Confidence 345888888776 44 66677777799999887664332211 235688998888887577788777799999
Q ss_pred ccCCCcccceeec--cCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceecc-----ccccceeEEEEccCCC
Q 018858 87 VHMPASWRPLESY--NYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA-----GHSSICSSVQFIPWKP 159 (349)
Q Consensus 87 ~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~ 159 (349)
.++++. ..+... ......|.++...+++.+.+. +.+ -+.+||..+++....... .....|.++...+
T Consensus 434 ~~~~~~-~~~~~~~~~l~~~~v~~i~~d~~g~lwig-t~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~--- 507 (795)
T 4a2l_A 434 RNSGQV-ENFNQRNSQLVNENVYAILPDGEGNLWLG-TLS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDS--- 507 (795)
T ss_dssp TTTCCE-EEECTTTSCCSCSCEEEEEECSSSCEEEE-ESS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECT---
T ss_pred CCCCcE-EEeecCCCCcCCCeeEEEEECCCCCEEEE-ecC-ceeEEeCCCCeEEEccccccccccCCceEEEEEECC---
Confidence 886532 111110 012356888888887765554 444 588999877654322210 1124566666665
Q ss_pred CCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeec-----CCCCCCccceeeee
Q 018858 160 WEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS-----KSTTKPLKGSQSTS 234 (349)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~~~~~~~~~ 234 (349)
++++.+ |+. +-|..||..+.+. ... .......+.++...
T Consensus 508 ---------------------------------~g~lWi-gt~-~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d 551 (795)
T 4a2l_A 508 ---------------------------------HKRLWI-GGE-EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEA 551 (795)
T ss_dssp ---------------------------------TCCEEE-EES-SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEEC
T ss_pred ---------------------------------CCCEEE-EeC-CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEEC
Confidence 566554 444 4588899877654 211 11223456778888
Q ss_pred ccccEEEEeee-eeecCc--eeeeeeeeecC-CCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCC
Q 018858 235 KVNIRDAEMEI-LDQSGG--KRLHLDYSVGG-HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 235 ~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~-h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 299 (349)
++|...+.... ...... ..........+ ....|.++..+ ++|++.+++ . +-|..|+..+.
T Consensus 552 ~~g~lWigT~~Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d---~~g~lWi~t-~-~Gl~~~~~~~~ 615 (795)
T 4a2l_A 552 SNGIIWVGTREGFYCFNEKDKQIKRYNTTNGLPNNVVYGILED---SFGRLWLST-N-RGISCFNPETE 615 (795)
T ss_dssp TTSCEEEEESSCEEEEETTTTEEEEECGGGTCSCSCEEEEEEC---TTSCEEEEE-T-TEEEEEETTTT
T ss_pred CCCCEEEEeCCCceeECCCCCcEEEeCCCCCCchhheEEEEEC---CCCCEEEEc-C-CceEEEcCCCC
Confidence 88887664321 111110 11111111112 13468888887 778766655 3 45778888764
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=5.7e-05 Score=61.42 Aligned_cols=159 Identities=14% Similarity=0.051 Sum_probs=95.4
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCC----CcEEEEeecCCCCeEEEEEecCCCEEEE-EeCCCeEEEEEccCC
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRS----KDVQLVTDVGNGPVTSLCFKSGNEDIIY-VSSGKEVKSFDVHMP 90 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~ 90 (349)
....+++|++.++.++++-..++.|..+++.. ......+...-.....+++.+.+..|+. -...+.|.+.++...
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~ 109 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence 34568999987456666666678999999875 2222223322245678999875555544 456789999998743
Q ss_pred CcccceeeccCcccceEEEEEccCCCEEEEEcC-C-CcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCC
Q 018858 91 ASWRPLESYNYNKEEINQIVCNPKSSFLACADD-G-GDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNG 168 (349)
Q Consensus 91 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 168 (349)
. ...+.. ........+++.|.+..|+.... . +.|..+++... ....+....-.....++++|+
T Consensus 110 ~-~~~~~~--~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~~~~~~~~P~gla~d~~----------- 174 (316)
T 1ijq_A 110 K-RKTLFR--ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLL----------- 174 (316)
T ss_dssp S-EEEEEE--CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEEEETT-----------
T ss_pred c-eEEEEE--CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-CeEEEEECCCCCceEEEEecc-----------
Confidence 2 222221 12246789999986665544433 2 67888887533 222222022334667888872
Q ss_pred CCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC
Q 018858 169 NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 213 (349)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 213 (349)
.++++++-...+.|..+|+..
T Consensus 175 ------------------------~~~lY~~D~~~~~I~~~d~dg 195 (316)
T 1ijq_A 175 ------------------------SGRLYWVDSKLHSISSIDVNG 195 (316)
T ss_dssp ------------------------TTEEEEEETTTTEEEEEETTS
T ss_pred ------------------------CCEEEEEECCCCeEEEEecCC
Confidence 344445555677999999874
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.69 E-value=4.8e-05 Score=59.16 Aligned_cols=215 Identities=8% Similarity=0.103 Sum_probs=125.8
Q ss_pred EeecCCCCeEEEEEecCCCEEEE-EeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEE
Q 018858 53 VTDVGNGPVTSLCFKSGNEDIIY-VSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIID 131 (349)
Q Consensus 53 ~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d 131 (349)
.+.+-...+..++|+|+++.|++ ...++.|...|.. ++..+.+. +.+ ......+++.+++.++++.-.++.+.+++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-l~g-~~D~EGIa~~~~g~~~vs~E~~~~l~~~~ 97 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-LDF-VKDLETIEYIGDNQFVISDERDYAIYVIS 97 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-CSS-CSSEEEEEECSTTEEEEEETTTTEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-cCC-CCChHHeEEeCCCEEEEEECCCCcEEEEE
Confidence 44455567999999998776665 5667889888987 54333332 121 24577888888888777766778899998
Q ss_pred cCCceE---eceec-----cccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCC
Q 018858 132 IRQHCL---YKSLR-----AGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD 203 (349)
Q Consensus 132 ~~~~~~---~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 203 (349)
+..... +.... ...+.....++|+| .++.|.++...
T Consensus 98 v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~------------------------------------~~~~L~va~E~ 141 (255)
T 3qqz_A 98 LTPNSEVKILKKIKIPLQESPTNCGFEGLAYSR------------------------------------QDHTFWFFKEK 141 (255)
T ss_dssp ECTTCCEEEEEEEECCCSSCCCSSCCEEEEEET------------------------------------TTTEEEEEEES
T ss_pred cCCCCeeeeeeeeccccccccccCCcceEEEeC------------------------------------CCCEEEEEECc
Confidence 764332 12221 01234456777777 56566666655
Q ss_pred CeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEE
Q 018858 204 GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLI 283 (349)
Q Consensus 204 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~ 283 (349)
....+|.++... . .. .+....+ ... .-..+...+.+++++| ..+.+++
T Consensus 142 ~p~~i~~~~g~~-----~----~~--~l~i~~~-----------------~~~--~~~~~~~d~S~l~~dp--~tg~lli 189 (255)
T 3qqz_A 142 NPIEVYKVNGLL-----S----SN--ELHISKD-----------------KAL--QRQFTLDDVSGAEFNQ--QKNTLLV 189 (255)
T ss_dssp SSEEEEEEESTT-----C----SS--CCEEEEC-----------------HHH--HHTCCSSCCCEEEEET--TTTEEEE
T ss_pred CCceEEEEcccc-----c----CC--ceeeecc-----------------hhh--ccccccCCceeEEEcC--CCCeEEE
Confidence 555566554200 0 00 0000000 000 0011234578999996 5667777
Q ss_pred EeeCCCeEEEEecCCCcceecccccceeeecccc------ccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 284 SGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL------NKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 284 s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
.....+.|.++|.... .. ..+....+. -.....|++.+ +|+ |+.+++-+.++.+.
T Consensus 190 LS~~s~~L~~~d~~g~-~~------~~~~L~~g~~~l~~~~~qpEGia~d~-~G~-lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 190 LSHESRALQEVTLVGE-VI------GEMSLTKGSRGLSHNIKQAEGVAMDA-SGN-IYIVSEPNRFYRFT 250 (255)
T ss_dssp EETTTTEEEEECTTCC-EE------EEEECSTTGGGCSSCCCSEEEEEECT-TCC-EEEEETTTEEEEEE
T ss_pred EECCCCeEEEEcCCCC-EE------EEEEcCCccCCcccccCCCCeeEECC-CCC-EEEEcCCceEEEEE
Confidence 7788899999998764 11 111112121 12567899988 775 66667777776664
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.68 E-value=0.0001 Score=61.78 Aligned_cols=114 Identities=7% Similarity=-0.000 Sum_probs=69.2
Q ss_pred CcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEE-eCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCC
Q 018858 38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYV-SSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSS 116 (349)
Q Consensus 38 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 116 (349)
..|+..++........+. ....+..++|.+.+..|+.+ ...+.|..+++.... ...+ ..........+++.+.+.
T Consensus 96 ~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~-~~~~--~~~~~~~p~glavd~~~g 171 (386)
T 3v65_B 96 IDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN-VEEV--VSTGLESPGGLAVDWVHD 171 (386)
T ss_dssp SCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC-EEEE--ECSSCSCCCCEEEETTTT
T ss_pred ccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC-cEEE--EeCCCCCccEEEEEeCCC
Confidence 568888887665544444 34557899999866666555 456889999987542 1121 111123456788887554
Q ss_pred -EEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEcc
Q 018858 117 -FLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 117 -~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
++++-...+.|.+.++........+. ........+++.|
T Consensus 172 ~lY~~d~~~~~I~~~~~dg~~~~~l~~-~~l~~P~giavdp 211 (386)
T 3v65_B 172 KLYWTDSGTSRIEVANLDGAHRKVLLW-QSLEKPRAIALHP 211 (386)
T ss_dssp EEEEEETTTTEEEECBTTSCSCEEEEC-SSCSCEEEEEEET
T ss_pred eEEEEcCCCCeEEEEeCCCCceEEeec-CCCCCCcEEEEEc
Confidence 44555566788888876443222222 2334567788877
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.6e-05 Score=70.20 Aligned_cols=157 Identities=11% Similarity=0.103 Sum_probs=93.2
Q ss_pred CceEEEeCCCCcEEEEECCCCcEEEEeecCCC----CeEE-EEEecCCCEEEEEeC------CCeEEEEEccCCCcccce
Q 018858 28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNG----PVTS-LCFKSGNEDIIYVSS------GKEVKSFDVHMPASWRPL 96 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~----~v~~-~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~ 96 (349)
+..++.++.|+.|..+|..+++.+........ .+.+ ... .+..+++++. ++.|..+|.++++.....
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 34677788899999999999999887653220 1111 111 1345666654 789999999988654433
Q ss_pred eeccCc----------------------------------cc-ceEEEEEccCCCEEEEEcCC----------------C
Q 018858 97 ESYNYN----------------------------------KE-EINQIVCNPKSSFLACADDG----------------G 125 (349)
Q Consensus 97 ~~~~~~----------------------------------~~-~v~~~~~~~~~~~l~~~~~d----------------g 125 (349)
...... .. ....+++.++...++.+..+ +
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~ 272 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM 272 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence 321100 00 00135566666666666532 2
Q ss_pred cEEEEEcCCceEeceecccc-cc----ceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCC---cEE
Q 018858 126 DVKIIDIRQHCLYKSLRAGH-SS----ICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTN---KIC 197 (349)
Q Consensus 126 ~i~i~d~~~~~~~~~~~~~~-~~----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l 197 (349)
.|..+|.++++.+..++..+ .. .+....+.. ... ++ +.+
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~---------------------------~~~------~G~~~~~v 319 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTD---------------------------QPV------NGKMTPLL 319 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEE---------------------------EEE------TTEEEEEE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEe---------------------------ccc------CCcEEEEE
Confidence 59999999999887766211 10 011111100 000 45 357
Q ss_pred EEEcCCCeEEEEEccCceeeee
Q 018858 198 VVAKGDGVVDVINIESELNISR 219 (349)
Q Consensus 198 ~~~~~dg~i~i~d~~~~~~~~~ 219 (349)
+.++.+|.+.++|.++++.+..
T Consensus 320 ~~~~~~G~l~~lD~~tG~~~w~ 341 (571)
T 2ad6_A 320 SHIDRNGILYTLNRENGNLIVA 341 (571)
T ss_dssp EEECTTSEEEEEETTTCCEEEE
T ss_pred EEeCCCcEEEEEECCCCCEEee
Confidence 7888999999999998876543
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.67 E-value=0.00015 Score=66.93 Aligned_cols=278 Identities=10% Similarity=-0.007 Sum_probs=153.0
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEee--------------cCCCCeEEEEEecCCCEEEEEeCCCe
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD--------------VGNGPVTSLCFKSGNEDIIYVSSGKE 81 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~l~~~~~dg~ 81 (349)
..|.++...++ +. |..|+..+-|.++|..+++...... .....|.++...++|. |..|+.++-
T Consensus 258 ~~i~~i~~d~~-g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~G 334 (781)
T 3v9f_A 258 SYIFSIKQLKD-NK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGG 334 (781)
T ss_dssp CCEEEEEECTT-SE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSC
T ss_pred ceEEEEEECCC-CC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCe
Confidence 45888887776 44 5555554568889987665322111 1345788998888776 667776777
Q ss_pred EEEEEccCCCcccceee-------ccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceec--cccccceeEE
Q 018858 82 VKSFDVHMPASWRPLES-------YNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR--AGHSSICSSV 152 (349)
Q Consensus 82 i~iwd~~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~v~~~ 152 (349)
|..++....... .+.. .......|.++...+++. |..|+.++-|..||..++....... ......|.++
T Consensus 335 l~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i 412 (781)
T 3v9f_A 335 INFISNAPPTFH-TWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCS 412 (781)
T ss_dssp EEEECSSCCSCE-EEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEE
T ss_pred EEEeCCCCCcce-eeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEE
Confidence 888887654321 1110 011235688888877765 5556666669999977554322111 0123456666
Q ss_pred EEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecC-CCCCCcccee
Q 018858 153 QFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK-STTKPLKGSQ 231 (349)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~~ 231 (349)
...+ ++. |.+|+.++.|..++.++++...... ......+.++
T Consensus 413 ~~d~------------------------------------~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i 455 (781)
T 3v9f_A 413 LKDS------------------------------------EGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVF 455 (781)
T ss_dssp EECT------------------------------------TSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEE
T ss_pred EECC------------------------------------CCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEE
Confidence 6655 555 4457766778899987665443322 2234567788
Q ss_pred eeeccccEEEEeee-eeecCce--eeeeeeeec---CCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecc
Q 018858 232 STSKVNIRDAEMEI-LDQSGGK--RLHLDYSVG---GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTS 305 (349)
Q Consensus 232 ~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~---~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~ 305 (349)
...++|...+.... ....... ......... .....|.++... ++|++.+. +.++-|..||..+....
T Consensus 456 ~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d---~~g~lWig-t~~~Gl~~~~~~~~~~~--- 528 (781)
T 3v9f_A 456 YEDKNKKIWIGTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQD---SEGRFWIG-TFGGGVGIYTPDMQLVR--- 528 (781)
T ss_dssp EECTTSEEEEEETTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEEC---TTCCEEEE-ESSSCEEEECTTCCEEE---
T ss_pred EECCCCCEEEEECCceEEEeCCCCeEEecccCcccccccceeEEEEEc---CCCCEEEE-EcCCCEEEEeCCCCeEE---
Confidence 88888887764321 0000000 111111111 113568888887 77776554 44334777887764211
Q ss_pred cccceeeeccc-cccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 306 INNDLLIKNIN-LNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 306 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
......+ ....|.++...+ ++. |..++.+|.+..||.
T Consensus 529 ----~~~~~~~l~~~~i~~i~~d~-~g~-lWi~T~~Glv~~~d~ 566 (781)
T 3v9f_A 529 ----KFNQYEGFCSNTINQIYRSS-KGQ-MWLATGEGLVCFPSA 566 (781)
T ss_dssp ----EECTTTTCSCSCEEEEEECT-TSC-EEEEETTEEEEESCT
T ss_pred ----EccCCCCCCCCeeEEEEECC-CCC-EEEEECCCceEEECC
Confidence 0000111 234677877755 554 555555665466653
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.64 E-value=0.00012 Score=60.44 Aligned_cols=132 Identities=8% Similarity=0.049 Sum_probs=78.2
Q ss_pred eeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEe-CCCeEEEEEccCCCcccc
Q 018858 17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVS-SGKEVKSFDVHMPASWRP 95 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~ 95 (349)
..+|.+..++ +.++++ . ...|+..++........+. ....+..++|++....|+.+. ..+.|..+++..... ..
T Consensus 35 ~~~C~~~~~~-~~ll~~-~-~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~~ 109 (349)
T 3v64_C 35 RRSCKALGPE-PVLLFA-N-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-EE 109 (349)
T ss_dssp SSCEEESSSC-CEEEEE-C-BSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EE
T ss_pred CCcccccccC-ceeEee-c-ccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCc-eE
Confidence 3456555553 333433 3 3458888887655444443 334578999998766666554 568899999875432 22
Q ss_pred eeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEcc
Q 018858 96 LESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 96 ~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
+ ..........+++.+.+ ..+++-...+.|.+.++........+. ........+++.|
T Consensus 110 ~--~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~-~~l~~P~~iavdp 168 (349)
T 3v64_C 110 V--VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW-QSLEKPRAIALHP 168 (349)
T ss_dssp E--ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-TTCSCEEEEEEET
T ss_pred E--EeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEe-CCCCCcceEEEec
Confidence 1 11112345788898755 444555667789999987543222222 2334567788887
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.57 E-value=8.7e-06 Score=73.37 Aligned_cols=183 Identities=6% Similarity=-0.001 Sum_probs=116.5
Q ss_pred EEEEecCCCceEEEeCCCC-------------------cEEEEECCCCcEEEEeec--CC-------CCeEEEEEecCCC
Q 018858 20 CCIASRDRPGFVASSGEDG-------------------CICWFDLRSKDVQLVTDV--GN-------GPVTSLCFKSGNE 71 (349)
Q Consensus 20 ~~~~~~~~~~~l~t~~~dg-------------------~i~vwd~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~ 71 (349)
.+++.|+ ..+++.+..++ .|..+|..+++.+..++. |. .+.....+..+|+
T Consensus 234 ~~a~d~~-~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~ 312 (668)
T 1kv9_A 234 SMAYDPE-LDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGK 312 (668)
T ss_dssp CEEEETT-TTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred ceEEcCC-CCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCc
Confidence 4678887 56777777665 399999999999888764 22 2333333334665
Q ss_pred ---EEEEEeCCCeEEEEEccCCCcccceeecc--------C-ccc------------------------ceEEEEEccCC
Q 018858 72 ---DIIYVSSGKEVKSFDVHMPASWRPLESYN--------Y-NKE------------------------EINQIVCNPKS 115 (349)
Q Consensus 72 ---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--------~-~~~------------------------~v~~~~~~~~~ 115 (349)
.++.++.+|.++++|.++++.+....... . ... .-..++++|+.
T Consensus 313 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~ 392 (668)
T 1kv9_A 313 PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT 392 (668)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred EEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCC
Confidence 68888999999999999886542211100 0 000 00125677766
Q ss_pred CEEEEE------------------------------------cCCCcEEEEEcCCceEeceeccccccceeEEEEccCCC
Q 018858 116 SFLACA------------------------------------DDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKP 159 (349)
Q Consensus 116 ~~l~~~------------------------------------~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 159 (349)
..++.. ..+|.|..||+.+++.+.+.+ . ........+..
T Consensus 393 g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~-~-~~~~~~~~~~t--- 467 (668)
T 1kv9_A 393 GLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVP-Y-PTHWNGGTLST--- 467 (668)
T ss_dssp TEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEE-E-SSSCCCCEEEE---
T ss_pred CEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEcc-C-CCCCcCceeEe---
Confidence 655431 123778899999988877766 2 22222222222
Q ss_pred CCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccE
Q 018858 160 WEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIR 239 (349)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (349)
.+.++++++.||.++.||.++++.+............-+.+..+|+.
T Consensus 468 ---------------------------------~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~ 514 (668)
T 1kv9_A 468 ---------------------------------AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQ 514 (668)
T ss_dssp ---------------------------------TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred ---------------------------------CCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEE
Confidence 56788889999999999999988777665554333345566667764
Q ss_pred EE
Q 018858 240 DA 241 (349)
Q Consensus 240 ~~ 241 (349)
.+
T Consensus 515 yv 516 (668)
T 1kv9_A 515 YV 516 (668)
T ss_dssp EE
T ss_pred EE
Confidence 44
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.54 E-value=0.00039 Score=63.51 Aligned_cols=161 Identities=13% Similarity=0.082 Sum_probs=98.7
Q ss_pred CceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC----cEEEEeecCCCCeEEEEEecCCCEEEEE-eCCCeEEEEEcc
Q 018858 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSK----DVQLVTDVGNGPVTSLCFKSGNEDIIYV-SSGKEVKSFDVH 88 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~ 88 (349)
....+..++|.+.++.++++-...+.|+.+++... .....+.........|++.+.++.|+.+ ...+.|.+.++.
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 501 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence 34556789999864566666666788999988753 2233333344556789999877666555 456899999987
Q ss_pred CCCcccceeeccCcccceEEEEEccCCCEEEEEc-C-CCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCC
Q 018858 89 MPASWRPLESYNYNKEEINQIVCNPKSSFLACAD-D-GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPEN 166 (349)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~-dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 166 (349)
... ...+.. ........|++.|...+|+... . .+.|...++........+. ..-.....|++.+.
T Consensus 502 G~~-~~~l~~--~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~-~~l~~P~GLavD~~--------- 568 (791)
T 3m0c_C 502 GVK-RKTLFR--ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT-ENIQWPNGITLDLL--------- 568 (791)
T ss_dssp SSS-EEEEEE--CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC-SSCSCEEEEEEETT---------
T ss_pred CCe-EEEEEe--CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe-CCCCCceEEEEecC---------
Confidence 432 222221 1224578999999765555443 2 2678888886443322222 23345677888762
Q ss_pred CCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC
Q 018858 167 NGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 213 (349)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 213 (349)
.++++++-...+.|..+++..
T Consensus 569 --------------------------~~~LYwaD~~~~~I~~~d~dG 589 (791)
T 3m0c_C 569 --------------------------SGRLYWVDSKLHSISSIDVNG 589 (791)
T ss_dssp --------------------------TTEEEEEETTTTEEEEEETTS
T ss_pred --------------------------CCeEEEEeCCCCcEEEEecCC
Confidence 344444445667888888875
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.53 E-value=0.00018 Score=58.22 Aligned_cols=84 Identities=7% Similarity=0.002 Sum_probs=54.5
Q ss_pred cEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCC--c
Q 018858 49 DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGG--D 126 (349)
Q Consensus 49 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~ 126 (349)
+.+..+... .....++|+++++.+++-..++.|..||.... . ...... ...+..+++.++++++++..... .
T Consensus 23 ~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~-~~~~~~---~~~p~gia~~~dG~l~vad~~~~~~~ 96 (306)
T 2p4o_A 23 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-Q-QIHATV---EGKVSGLAFTSNGDLVATGWNADSIP 96 (306)
T ss_dssp EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-E-EEEEEC---SSEEEEEEECTTSCEEEEEECTTSCE
T ss_pred eEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-e-EEEEeC---CCCceeEEEcCCCcEEEEeccCCcce
Confidence 344455432 45788999999986666667889999987642 1 111111 24688999999998666554322 4
Q ss_pred EEEEEcCCceEe
Q 018858 127 VKIIDIRQHCLY 138 (349)
Q Consensus 127 i~i~d~~~~~~~ 138 (349)
|..+|..+++..
T Consensus 97 v~~~d~~~g~~~ 108 (306)
T 2p4o_A 97 VVSLVKSDGTVE 108 (306)
T ss_dssp EEEEECTTSCEE
T ss_pred EEEEcCCCCeEE
Confidence 777777776643
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=5.8e-05 Score=61.59 Aligned_cols=112 Identities=6% Similarity=-0.131 Sum_probs=69.6
Q ss_pred eeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeec-----CCCCeEEEEEec-CCCEEEEEeC------------
Q 018858 17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDV-----GNGPVTSLCFKS-GNEDIIYVSS------------ 78 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~l~~~~~------------ 78 (349)
....+++.+++++++++.. .+.|..+|..+++.. .+.. .......+++.+ +|+..++-..
T Consensus 81 ~p~gi~~~~~~g~l~v~d~-~~~i~~~d~~~g~~~-~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~ 158 (322)
T 2fp8_A 81 RTYDISYNLQNNQLYIVDC-YYHLSVVGSEGGHAT-QLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIM 158 (322)
T ss_dssp CEEEEEEETTTTEEEEEET-TTEEEEECTTCEECE-EEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHH
T ss_pred CCceEEEcCCCCcEEEEEC-CCCEEEEeCCCCEEE-EecccCCCCcccccceEEEecCCCEEEEECCcccccccccceeh
Confidence 4678899973255554433 345888887655321 2211 113467899999 8876665432
Q ss_pred -----CCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEE-cCCCcEEEEEcCC
Q 018858 79 -----GKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACA-DDGGDVKIIDIRQ 134 (349)
Q Consensus 79 -----dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~ 134 (349)
++.|..+|..+++.......+ .....++++|+++.|+.+ ...+.|.+|++..
T Consensus 159 ~~~~~~g~v~~~d~~~~~~~~~~~~~----~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~ 216 (322)
T 2fp8_A 159 DTSDKTGRLIKYDPSTKETTLLLKEL----HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEG 216 (322)
T ss_dssp HHTCCCEEEEEEETTTTEEEEEEEEE----SCCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred cccCCCceEEEEeCCCCEEEEeccCC----ccCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence 367888887654321111221 345679999999866554 5668899999874
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=4.9e-05 Score=67.23 Aligned_cols=112 Identities=14% Similarity=0.075 Sum_probs=72.5
Q ss_pred eEEEeC------CCCcEEEEECCCCcEEEEeecCCCCe-----------------------------------------E
Q 018858 30 FVASSG------EDGCICWFDLRSKDVQLVTDVGNGPV-----------------------------------------T 62 (349)
Q Consensus 30 ~l~t~~------~dg~i~vwd~~~~~~~~~~~~~~~~v-----------------------------------------~ 62 (349)
.++.++ .+|.|+.+|..+++.+.........+ .
T Consensus 170 ~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~ 249 (582)
T 1flg_A 170 LLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQ 249 (582)
T ss_dssp EEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCS
T ss_pred EEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccC
Confidence 565554 37899999999999887664321100 1
Q ss_pred EEEEecCCCEEEEEeC--------------------C----CeEEEEEccCCCcccceeeccCcc-------cceEEEEE
Q 018858 63 SLCFKSGNEDIIYVSS--------------------G----KEVKSFDVHMPASWRPLESYNYNK-------EEINQIVC 111 (349)
Q Consensus 63 ~~~~~~~~~~l~~~~~--------------------d----g~i~iwd~~~~~~~~~~~~~~~~~-------~~v~~~~~ 111 (349)
.+++.|....++.+.. | +.|.-+|.++++.....+.. .|. ....-+..
T Consensus 250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~-~~d~wd~~~~~~p~l~~~ 328 (582)
T 1flg_A 250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHT-PNDAWDFSGNNELVLFDY 328 (582)
T ss_dssp CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESS-TTCCSCCCCCCCCEEEEE
T ss_pred CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCC-CCCcccccCCCCcEEEee
Confidence 2456666677776653 2 58999999988755443321 111 11111222
Q ss_pred c-cCC---CEEEEEcCCCcEEEEEcCCceEeceec
Q 018858 112 N-PKS---SFLACADDGGDVKIIDIRQHCLYKSLR 142 (349)
Q Consensus 112 ~-~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~ 142 (349)
. .++ ..++.++.+|.++++|.++++.+..++
T Consensus 329 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~ 363 (582)
T 1flg_A 329 KAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFP 363 (582)
T ss_dssp ECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ecCCCCEEEEEEEECCCceEEEEECCCCCEecccc
Confidence 1 356 377889999999999999999987766
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=8e-05 Score=65.85 Aligned_cols=158 Identities=9% Similarity=0.028 Sum_probs=93.6
Q ss_pred EEEeCCCCcEEEEECCCCcEEEEeecCCC----CeEE-EEEecCCCEEEEEe------CCCeEEEEEccCCCcccceeec
Q 018858 31 VASSGEDGCICWFDLRSKDVQLVTDVGNG----PVTS-LCFKSGNEDIIYVS------SGKEVKSFDVHMPASWRPLESY 99 (349)
Q Consensus 31 l~t~~~dg~i~vwd~~~~~~~~~~~~~~~----~v~~-~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~ 99 (349)
|+.++.|+.|..+|..+++.+........ .+.+ ..+. ++ .+++++ .++.|.-+|.++++........
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~ 201 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT 201 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence 77788899999999999999877654320 1111 1111 33 455554 3789999999988654333221
Q ss_pred cCc----------------------------------ccce-EEEEEccCCCEEEEEcCC----------------CcEE
Q 018858 100 NYN----------------------------------KEEI-NQIVCNPKSSFLACADDG----------------GDVK 128 (349)
Q Consensus 100 ~~~----------------------------------~~~v-~~~~~~~~~~~l~~~~~d----------------g~i~ 128 (349)
... ...+ ..+++.++...++.+..+ +.|.
T Consensus 202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~ 281 (599)
T 1w6s_A 202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF 281 (599)
T ss_dssp SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEE
Confidence 100 0001 134566677777777655 3799
Q ss_pred EEEcCCceEeceeccccccceeEEEE--ccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCC---cEEEEEcCC
Q 018858 129 IIDIRQHCLYKSLRAGHSSICSSVQF--IPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTN---KICVVAKGD 203 (349)
Q Consensus 129 i~d~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~d 203 (349)
.+|.++++.+..++ ........... .| .+ .... +.++ ..++.++.+
T Consensus 282 Ald~~TG~~~W~~q-~~~~d~wd~d~~~~p---------------------~l--~d~~-----~~~G~~~~~v~~~~~~ 332 (599)
T 1w6s_A 282 GRDADTGEAKFGYQ-KTPHDEWDYAGVNVM---------------------ML--SEQK-----DKDGKARKLLTHPDRN 332 (599)
T ss_dssp EEETTTCCEEEEEE-SSTTCSSCCCCCCCC---------------------EE--EEEE-----CTTSCEEEEEEEECTT
T ss_pred EEeCCCCceeeEee-cCCCccccccCCCcc---------------------EE--Eecc-----ccCCcEEEEEEEECCC
Confidence 99999999887776 22111110000 00 00 0000 0145 567778899
Q ss_pred CeEEEEEccCceeeee
Q 018858 204 GVVDVINIESELNISR 219 (349)
Q Consensus 204 g~i~i~d~~~~~~~~~ 219 (349)
|.+.++|.++++.+..
T Consensus 333 G~l~~lD~~tG~~lw~ 348 (599)
T 1w6s_A 333 GIVYTLDRTDGALVSA 348 (599)
T ss_dssp SEEEEEETTTCCEEEE
T ss_pred cEEEEEECCCCCEeec
Confidence 9999999998876553
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.50 E-value=0.0002 Score=58.00 Aligned_cols=143 Identities=8% Similarity=0.128 Sum_probs=92.3
Q ss_pred CceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecC----CCE--EEEEe-C---CCeEEEEEcc--CCCcccc
Q 018858 28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSG----NED--IIYVS-S---GKEVKSFDVH--MPASWRP 95 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~----~~~--l~~~~-~---dg~i~iwd~~--~~~~~~~ 95 (349)
..+++.....+-+.+||+ +++.++.+.. +.+..+..-|. ++. ++.++ . +++|.+|++. +++ ...
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~ 115 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQS 115 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEE
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eee
Confidence 345666666788999999 7888888764 56777776652 322 33333 3 4789999874 221 222
Q ss_pred eeec--c--CcccceEEEEE--ccC-CC-EEEEEcCCCcEEEEEcC-------CceEeceeccccccceeEEEEccCCCC
Q 018858 96 LESY--N--YNKEEINQIVC--NPK-SS-FLACADDGGDVKIIDIR-------QHCLYKSLRAGHSSICSSVQFIPWKPW 160 (349)
Q Consensus 96 ~~~~--~--~~~~~v~~~~~--~~~-~~-~l~~~~~dg~i~i~d~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~ 160 (349)
+... + .....+..+++ +|. +. ++++...+|.+..|++. +.+.++++. ..+.+..+...+
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~--lgsq~EgcvvDd---- 189 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK--MNSQTEGMAADD---- 189 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE--CSSCEEEEEEET----
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec--CCCCcceEEEcC----
Confidence 2111 1 11145666777 664 43 57778888999999883 345667776 345677888877
Q ss_pred CCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEcc
Q 018858 161 EGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE 212 (349)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 212 (349)
....|+++-++.-|..|+.+
T Consensus 190 --------------------------------~~g~Lyv~eEd~GIw~~da~ 209 (355)
T 3amr_A 190 --------------------------------EYGRLYIAEEDEAIWKFSAE 209 (355)
T ss_dssp --------------------------------TTTEEEEEETTTEEEEEECS
T ss_pred --------------------------------CCCeEEEecccceEEEEeCC
Confidence 67788888888766666654
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.49 E-value=2.1e-05 Score=70.87 Aligned_cols=115 Identities=8% Similarity=0.048 Sum_probs=73.3
Q ss_pred EEEEecCCCceEEEeCCCC-----------cEEEEECCCCcE--EEEeec-CCCCeEEEEEecCCCEEEEEeC-CCeEEE
Q 018858 20 CCIASRDRPGFVASSGEDG-----------CICWFDLRSKDV--QLVTDV-GNGPVTSLCFKSGNEDIIYVSS-GKEVKS 84 (349)
Q Consensus 20 ~~~~~~~~~~~l~t~~~dg-----------~i~vwd~~~~~~--~~~~~~-~~~~v~~~~~~~~~~~l~~~~~-dg~i~i 84 (349)
+.++.+.++++++.|+.+. .+.+||..+++. +..+.. +.....++++..+++.++.|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 4567773378888876542 588999887653 223322 3333445677889999999884 458999
Q ss_pred EEccCCCcccceeeccCcccceEEEEEccCCCEEEEEc-CC-----CcEEEEEcCCce
Q 018858 85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACAD-DG-----GDVKIIDIRQHC 136 (349)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-----g~i~i~d~~~~~ 136 (349)
||..+.+ ...+..+... ..-..++..++++.++.|+ .+ ..+.+||..+++
T Consensus 270 yd~~t~~-W~~~~~~~~~-R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 270 YDSSSDS-WIPGPDMQVA-RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp EEGGGTE-EEECCCCSSC-CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred ecCcCCc-eeECCCCCcc-ccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 9988653 2222222211 1223455567889999988 34 468999987664
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.48 E-value=0.00029 Score=57.17 Aligned_cols=159 Identities=11% Similarity=0.020 Sum_probs=97.4
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcE-EEEeecCCCCeEEEEEecCCCEEE-EEeCCCeEEEEEccCCCcc
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV-QLVTDVGNGPVTSLCFKSGNEDII-YVSSGKEVKSFDVHMPASW 93 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~ 93 (349)
....+++|.+.++.++++-...+.|..++...... ...+...-.....+++.+.+..|+ +-...+.|.++++.... .
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-~ 113 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-R 113 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-C
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc-E
Confidence 45678899986466666666778899999876532 122222334567888987555554 44556889999987432 2
Q ss_pred cceeeccCcccceEEEEEccCCCEEEEEc--CCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCc
Q 018858 94 RPLESYNYNKEEINQIVCNPKSSFLACAD--DGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAG 171 (349)
Q Consensus 94 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 171 (349)
..+. .........+++.|.+..|+... ..+.|..+++.......... ..-.....++++|+
T Consensus 114 ~~l~--~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~-~~l~~Pnglavd~~-------------- 176 (318)
T 3sov_A 114 KVLF--WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN-SEIYWPNGLTLDYE-------------- 176 (318)
T ss_dssp EEEE--CSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEEC-SSCSCEEEEEEETT--------------
T ss_pred EEEE--eCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEE-CCCCCccEEEEecc--------------
Confidence 2221 12235578999998766655544 35778888876332211122 22234567888873
Q ss_pred cccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC
Q 018858 172 QCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 213 (349)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 213 (349)
.++++++-...+.|..+|+..
T Consensus 177 ---------------------~~~lY~aD~~~~~I~~~d~dG 197 (318)
T 3sov_A 177 ---------------------EQKLYWADAKLNFIHKSNLDG 197 (318)
T ss_dssp ---------------------TTEEEEEETTTTEEEEEETTS
T ss_pred ---------------------CCEEEEEECCCCEEEEEcCCC
Confidence 344445555678899999874
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.46 E-value=0.00089 Score=61.74 Aligned_cols=274 Identities=11% Similarity=0.043 Sum_probs=148.9
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEee-------cCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD-------VGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVH 88 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 88 (349)
..|.++...++ +.+.+ |+.+ -|.+||..+++...... .....|.++...++|. |..|+..+-|.++|..
T Consensus 211 ~~i~~i~~d~~-g~lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~ 286 (781)
T 3v9f_A 211 NDVRCIYKDTN-GNIWI-GTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQ 286 (781)
T ss_dssp SSEEEEEECTT-CCEEE-EETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETT
T ss_pred CceeEEEEcCC-CCEEE-EeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCC
Confidence 45888877776 55444 4444 58999987665422111 1245688888877775 5566664568889887
Q ss_pred CCCccccee-------e----ccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceec---------cccccc
Q 018858 89 MPASWRPLE-------S----YNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR---------AGHSSI 148 (349)
Q Consensus 89 ~~~~~~~~~-------~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---------~~~~~~ 148 (349)
+........ . .......|.++...+++. |..|+.++-|..++........ +. ......
T Consensus 287 ~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~ 364 (781)
T 3v9f_A 287 QNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHT-WSYSPTQMNESSLSNKV 364 (781)
T ss_dssp CC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEE-EC----CCCSSCCSSSC
T ss_pred CCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCccee-eccCccccccCCCCCcc
Confidence 643211111 0 011235688888887775 5567766778888876543211 11 012234
Q ss_pred eeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecC--CCCCC
Q 018858 149 CSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK--STTKP 226 (349)
Q Consensus 149 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~ 226 (349)
|.++...+ ++. |.+|+.++-|..||..+........ .....
T Consensus 365 v~~i~~d~------------------------------------~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~ 407 (781)
T 3v9f_A 365 VSSVCDDG------------------------------------QGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSN 407 (781)
T ss_dssp EEEEEECT------------------------------------TSC-EEEEEBSSCEEEEETTEEEEECC-----CCCS
T ss_pred eEEEEEcC------------------------------------CCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCc
Confidence 66666655 555 5566766668899987654332211 12235
Q ss_pred ccceeeeeccccEEEEee--eeeecCceeeeeeeeec---CCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcc
Q 018858 227 LKGSQSTSKVNIRDAEME--ILDQSGGKRLHLDYSVG---GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG 301 (349)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 301 (349)
.+.++...++|...+... ........... ...+. .....|.++... +++.+.+ |+. +-|..||..+++-
T Consensus 408 ~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~-~~~~~~~~~~~~~v~~i~~d---~~g~lwi-gt~-~Gl~~~~~~~~~~ 481 (781)
T 3v9f_A 408 SVLCSLKDSEGNLWFGTYLGNISYYNTRLKK-FQIIELEKNELLDVRVFYED---KNKKIWI-GTH-AGVFVIDLASKKV 481 (781)
T ss_dssp BEEEEEECTTSCEEEEETTEEEEEECSSSCE-EEECCSTTTCCCCEEEEEEC---TTSEEEE-EET-TEEEEEESSSSSC
T ss_pred ceEEEEECCCCCEEEEeccCCEEEEcCCCCc-EEEeccCCCCCCeEEEEEEC---CCCCEEE-EEC-CceEEEeCCCCeE
Confidence 567777777887776431 11111111111 11111 124578888877 6776554 444 4588899877532
Q ss_pred eecccccceeeecc---ccccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 302 VQTSINNDLLIKNI---NLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 302 ~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
. ...... .....|.+++..+ ++. |..++.++-+..|+
T Consensus 482 ~-------~~~~~~~~~~~~~~i~~i~~d~-~g~-lWigt~~~Gl~~~~ 521 (781)
T 3v9f_A 482 I-------HHYDTSNSQLLENFVRSIAQDS-EGR-FWIGTFGGGVGIYT 521 (781)
T ss_dssp C-------EEECTTTSSCSCSCEEEEEECT-TCC-EEEEESSSCEEEEC
T ss_pred E-------ecccCcccccccceeEEEEEcC-CCC-EEEEEcCCCEEEEe
Confidence 1 110000 1135688887765 554 55555533355554
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.45 E-value=4.7e-05 Score=69.74 Aligned_cols=92 Identities=8% Similarity=0.000 Sum_probs=57.3
Q ss_pred CeEEEEEe-cCCCEEEEEeC-CC----eEEEEEccCC-CcccceeeccCcccceEEEEEccCCCEEEEEcCC-----CcE
Q 018858 60 PVTSLCFK-SGNEDIIYVSS-GK----EVKSFDVHMP-ASWRPLESYNYNKEEINQIVCNPKSSFLACADDG-----GDV 127 (349)
Q Consensus 60 ~v~~~~~~-~~~~~l~~~~~-dg----~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i 127 (349)
.+...+|| |+|++|+.+.. +| .|+++|+.++ +... ..+ ......++|+||++.|+....+ ..|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~--~~~---~~~~~~~~WspDg~~l~y~~~d~~~~~~~v 249 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA--DKV---SGTNGEIVWGPDHTSLFYVTKDETLRENKV 249 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC--CCE---EEECSCCEECSSTTEEEEEEECTTCCEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC--ccc---cCceeeEEEecCCCEEEEEEECCCCCCCEE
Confidence 57789999 99999886643 22 5999999987 4211 111 1223568899999888776654 257
Q ss_pred EEEEcCCceE--eceeccccccceeEEEEcc
Q 018858 128 KIIDIRQHCL--YKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 128 ~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~ 156 (349)
+++++.++.. ...+..........+.|+|
T Consensus 250 ~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp 280 (751)
T 2xe4_A 250 WRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA 280 (751)
T ss_dssp EEEETTSCGGGCEEEEECCCTTCEEEEEECT
T ss_pred EEEECCCCchhcEEEEecCCCceEEEEEECC
Confidence 8888876532 1222201222345677888
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=4.3e-05 Score=67.44 Aligned_cols=164 Identities=9% Similarity=-0.047 Sum_probs=99.3
Q ss_pred cEEEEECCCCcEEEEeecC----------CCCeEEEEEecCCC---EEEEEeCCCeEEEEEccCCCcccceeeccCc---
Q 018858 39 CICWFDLRSKDVQLVTDVG----------NGPVTSLCFKSGNE---DIIYVSSGKEVKSFDVHMPASWRPLESYNYN--- 102 (349)
Q Consensus 39 ~i~vwd~~~~~~~~~~~~~----------~~~v~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--- 102 (349)
.|..+|.++++.+..++.. ..++. +....+|+ .++.++.+|.+.++|.++++.......-...
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~ 351 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF 351 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence 5999999999998887632 12222 22334674 5677888999999999887644332211000
Q ss_pred -------ccce--------------------------EEEEEccCCCEEEEEcC--------------------------
Q 018858 103 -------KEEI--------------------------NQIVCNPKSSFLACADD-------------------------- 123 (349)
Q Consensus 103 -------~~~v--------------------------~~~~~~~~~~~l~~~~~-------------------------- 123 (349)
..++ ..++++|+..++++...
T Consensus 352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~ 431 (571)
T 2ad6_A 352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM 431 (571)
T ss_dssp EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccccee
Confidence 0000 23577787777765532
Q ss_pred -----------CCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCC
Q 018858 124 -----------GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDK 192 (349)
Q Consensus 124 -----------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (349)
+|.|..||+.+++.+.++. ....+....+..
T Consensus 432 ~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~--~~~~~~~~~~~t------------------------------------ 473 (571)
T 2ad6_A 432 YPGPNGPTKKEMGQIRAFDLTTGKAKWTKW--EKFAAWGGTLYT------------------------------------ 473 (571)
T ss_dssp EECTTSTTSCCCEEEEEECTTTCCEEEEEE--ESSCCCSBCEEE------------------------------------
T ss_pred ccCccccCCCCCCeEEEEECCCCCEEEEec--CCCCccceeEEE------------------------------------
Confidence 4667777877777766655 111121111111
Q ss_pred CCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEE
Q 018858 193 TNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA 241 (349)
Q Consensus 193 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (349)
.+..+++++.||.|+.+|.++++.+-............+.+..+|+.++
T Consensus 474 ~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv 522 (571)
T 2ad6_A 474 KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYI 522 (571)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEE
Confidence 3567777999999999999998877655544333333344556666555
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=0.00038 Score=56.57 Aligned_cols=115 Identities=11% Similarity=0.072 Sum_probs=70.4
Q ss_pred CcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEe-CCCeEEEEEccCC---CcccceeeccCcccceEEEEEcc
Q 018858 38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVS-SGKEVKSFDVHMP---ASWRPLESYNYNKEEINQIVCNP 113 (349)
Q Consensus 38 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~ 113 (349)
..|+..|+...+....+. ....+..++|++.++.|+.+. ..+.|..+++... .....+ ..........+++.+
T Consensus 10 ~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~--~~~~~~~p~glavd~ 86 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV--ISRDIQAPDGLAVDW 86 (316)
T ss_dssp SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE--ECSSCSCCCEEEEET
T ss_pred CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEE--EeCCCCCcCEEEEee
Confidence 468999998876655444 345678999998766665554 5689999998751 111111 111123567889987
Q ss_pred CC-CEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEcc
Q 018858 114 KS-SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 114 ~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
.+ +..++-...+.|.++++........+. ........+++.|
T Consensus 87 ~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~-~~~~~P~~iavdp 129 (316)
T 1ijq_A 87 IHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDP 129 (316)
T ss_dssp TTTEEEEEETTTTEEEEEETTSSSEEEEEE-CTTCCEEEEEEET
T ss_pred cCCeEEEEECCCCEEEEEeCCCCceEEEEE-CCCCCcceEEeCC
Confidence 55 444555677889999987543322222 2334567788887
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.44 E-value=0.00033 Score=63.13 Aligned_cols=119 Identities=8% Similarity=0.004 Sum_probs=73.0
Q ss_pred EEEEec-CCCEEEEEeCCC-----------eEEEEEccCCCcccceeecc-CcccceEEEEEccCCCEEEEEcC-CCcEE
Q 018858 63 SLCFKS-GNEDIIYVSSGK-----------EVKSFDVHMPASWRPLESYN-YNKEEINQIVCNPKSSFLACADD-GGDVK 128 (349)
Q Consensus 63 ~~~~~~-~~~~l~~~~~dg-----------~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-dg~i~ 128 (349)
..++.+ +++.++.|+.+. .+.+||..+++- ..+.... .+......+++..+++.+++|+. +..+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w-~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIV-SDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCB-CCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcE-EeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceE
Confidence 556677 788888887542 688999987642 3333221 12223445677788999999884 45799
Q ss_pred EEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEc-CC----
Q 018858 129 IIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GD---- 203 (349)
Q Consensus 129 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d---- 203 (349)
+||..+.+-...-.......-.+++..+ ++++++.|+ .+
T Consensus 269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~------------------------------------dg~iyv~GG~~~~~~~ 312 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQVARGYQSSATMS------------------------------------DGRVFTIGGSWSGGVF 312 (656)
T ss_dssp EEEGGGTEEEECCCCSSCCSSCEEEECT------------------------------------TSCEEEECCCCCSSSC
T ss_pred EecCcCCceeECCCCCccccccceEEec------------------------------------CCeEEEEeCcccCCcc
Confidence 9998865432211100111112334444 688888888 34
Q ss_pred -CeEEEEEccCceeee
Q 018858 204 -GVVDVINIESELNIS 218 (349)
Q Consensus 204 -g~i~i~d~~~~~~~~ 218 (349)
..+.+||..+.+...
T Consensus 313 ~~~~e~yd~~t~~W~~ 328 (656)
T 1k3i_A 313 EKNGEVYSPSSKTWTS 328 (656)
T ss_dssp CCCEEEEETTTTEEEE
T ss_pred cccceEeCCCCCccee
Confidence 468999998876544
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.41 E-value=4.9e-05 Score=67.19 Aligned_cols=165 Identities=9% Similarity=0.041 Sum_probs=100.5
Q ss_pred CcEEEEECCCCcEEEEeec--CC--------CCeEEEEEe-cCCC---EEEEEeCCCeEEEEEccCCCcccceeecc---
Q 018858 38 GCICWFDLRSKDVQLVTDV--GN--------GPVTSLCFK-SGNE---DIIYVSSGKEVKSFDVHMPASWRPLESYN--- 100 (349)
Q Consensus 38 g~i~vwd~~~~~~~~~~~~--~~--------~~v~~~~~~-~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--- 100 (349)
+.|..+|..+++.+..++. |. .++. +... .+|+ .++.++.+|.++++|.++++.+.....-.
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~ 369 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT 369 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence 6899999999999888764 32 2222 2222 4664 67888999999999998876443222110
Q ss_pred ----------------------------Cccc-----------ceEEEEEccCCCEEEEEc-------------------
Q 018858 101 ----------------------------YNKE-----------EINQIVCNPKSSFLACAD------------------- 122 (349)
Q Consensus 101 ----------------------------~~~~-----------~v~~~~~~~~~~~l~~~~------------------- 122 (349)
.... .-..++++|+...+++..
T Consensus 370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~ 449 (582)
T 1flg_A 370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA 449 (582)
T ss_dssp SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence 0000 001345666555554432
Q ss_pred --------------CCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCccc
Q 018858 123 --------------DGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDAD 188 (349)
Q Consensus 123 --------------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (349)
.+|.|..||+.+++.+.+.+ .. .+...-....
T Consensus 450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~-~~-~~~~~g~~~t-------------------------------- 495 (582)
T 1flg_A 450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHK-EH-LPLWAGVLAT-------------------------------- 495 (582)
T ss_dssp CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEE-ES-SCCCSCCEEE--------------------------------
T ss_pred eeccceeecCCCCCCcceEEEEECCCCCEEEEec-CC-CCCcccceEe--------------------------------
Confidence 24667777777777766655 11 1111100000
Q ss_pred ccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEE
Q 018858 189 MLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA 241 (349)
Q Consensus 189 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (349)
.+.++++++.||.++.||.++++.+-...........-+.+..+|+..+
T Consensus 496 ----agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv 544 (582)
T 1flg_A 496 ----AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL 544 (582)
T ss_dssp ----TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred ----CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEE
Confidence 4567888999999999999999887766655444444567777877554
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=8.3e-05 Score=65.77 Aligned_cols=49 Identities=6% Similarity=0.028 Sum_probs=36.0
Q ss_pred CCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEE
Q 018858 193 TNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA 241 (349)
Q Consensus 193 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (349)
.+.+++.++.||.|+.||.++++.+-...........-+.+..+|+..+
T Consensus 483 agg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv 531 (599)
T 1w6s_A 483 AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYV 531 (599)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred cCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEE
Confidence 4667778999999999999999887766555444445566777776544
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.38 E-value=0.00073 Score=56.84 Aligned_cols=124 Identities=10% Similarity=0.028 Sum_probs=74.1
Q ss_pred eEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEe-CCCeEEEEEccCCCcc-cceeeccCcccceE
Q 018858 30 FVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVS-SGKEVKSFDVHMPASW-RPLESYNYNKEEIN 107 (349)
Q Consensus 30 ~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~-~~~~~~~~~~~~v~ 107 (349)
+|+.+. ...|+..++........+. ....+..++|++.+..|+.+. ..+.|+.+++...... ..............
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 344333 3578888888665544443 456788999998766666654 5678998988642100 11111221234577
Q ss_pred EEEEccC-CCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEcc
Q 018858 108 QIVCNPK-SSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 108 ~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
.+++.+. +++.++-...+.|.+.++........+. ........+++.|
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~-~~~~~P~~iavdp 211 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDP 211 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEE-CSSCCEEEEEEET
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEe-CCCCCcceEEEec
Confidence 8899874 4555566667889999987554333333 2334567888887
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.34 E-value=7.5e-06 Score=74.05 Aligned_cols=158 Identities=13% Similarity=0.073 Sum_probs=88.8
Q ss_pred eeeEEEEecCCCceEEEeCCCCcEEEEECCC----CcEEEEeecCCCCeEEEEEecCCCEEEEE-eCCCeEEEEEccCCC
Q 018858 17 TATCCIASRDRPGFVASSGEDGCICWFDLRS----KDVQLVTDVGNGPVTSLCFKSGNEDIIYV-SSGKEVKSFDVHMPA 91 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~ 91 (349)
.+..++|.+.++.++++-...+.|+.+++.. ......+.........|++.+.+..|+.+ ...+.|.++++....
T Consensus 407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~ 486 (699)
T 1n7d_A 407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK 486 (699)
T ss_dssp TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC
T ss_pred ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCc
Confidence 3567889887344455545568899999875 22222222122234567887655444443 456789999887432
Q ss_pred cccceeeccCcccceEEEEEccCCCEEEEEcC--CCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCC
Q 018858 92 SWRPLESYNYNKEEINQIVCNPKSSFLACADD--GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGN 169 (349)
Q Consensus 92 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 169 (349)
...+ +.........+++.|.+.+|+.... .+.|.++++.... ...+....-.....|+|+|+
T Consensus 487 -~~~l--~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l~~~~l~~PnGlavd~~------------ 550 (699)
T 1n7d_A 487 -RKTL--FREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLL------------ 550 (699)
T ss_dssp -EEEE--CCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEESCSSCSSCCCEEECTT------------
T ss_pred -eEEE--EeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEEEeCCCCCccEEEEecc------------
Confidence 1221 1111244677899987655554432 2678777765322 22221012234566777773
Q ss_pred CccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC
Q 018858 170 AGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 213 (349)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 213 (349)
.++++++-...+.|..+++..
T Consensus 551 -----------------------~~~LY~aD~~~~~I~~~d~dG 571 (699)
T 1n7d_A 551 -----------------------SGRLYWVDSKLHSISSIDVNG 571 (699)
T ss_dssp -----------------------TCCEEEEETTTTEEEEECSSS
T ss_pred -----------------------CCEEEEEecCCCeEEEEccCC
Confidence 355556666778899998864
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.32 E-value=0.0019 Score=59.15 Aligned_cols=117 Identities=11% Similarity=0.009 Sum_probs=69.7
Q ss_pred CcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEE-eCCCeEEEEEccCCCcc-cceeeccCcccceEEEEEccCC
Q 018858 38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYV-SSGKEVKSFDVHMPASW-RPLESYNYNKEEINQIVCNPKS 115 (349)
Q Consensus 38 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~ 115 (349)
..|+..++...+....+. ....+..++|.+....|+.+ ...+.|+.+++...... .....+.........|++.+.+
T Consensus 404 ~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~ 482 (791)
T 3m0c_C 404 HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 482 (791)
T ss_dssp SSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred cceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecC
Confidence 468888887665444443 45667899999866665554 45678988888742110 1111122123456788998776
Q ss_pred C-EEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEcc
Q 018858 116 S-FLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 116 ~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
+ ++++-...+.|.+.++........+. ........|++.|
T Consensus 483 ~~LY~tD~~~~~I~v~~ldG~~~~~l~~-~~l~~P~gIaVDp 523 (791)
T 3m0c_C 483 SNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDP 523 (791)
T ss_dssp TEEEEEETTTTEEEEEETTSSSEEEEEE-CTTCCEEEEEEET
T ss_pred CcEEEEecCCCeEEEEeCCCCeEEEEEe-CCCCCcceEEEec
Confidence 4 44555667889999987544333332 2334577888887
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.32 E-value=0.0011 Score=56.67 Aligned_cols=112 Identities=13% Similarity=0.143 Sum_probs=71.0
Q ss_pred eeEEEEec-CCCceEEEeCCCCcEEEEECCCCcEEEEeecC---CCCeEEEEE-------ecCCCEEEEEeCCC------
Q 018858 18 ATCCIASR-DRPGFVASSGEDGCICWFDLRSKDVQLVTDVG---NGPVTSLCF-------KSGNEDIIYVSSGK------ 80 (349)
Q Consensus 18 i~~~~~~~-~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~---~~~v~~~~~-------~~~~~~l~~~~~dg------ 80 (349)
-..|+|+| ++++++++-...+.|++.|++++.....+... ......++| ++++++|+++...+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~ 220 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES 220 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence 45789998 33445555444567899998877765444332 235789999 99999777766543
Q ss_pred -eEEEEEccC-CCcc-----cceeeccCcccceEEEEEccCC-CEEEEEcCCCcEEEEEcC
Q 018858 81 -EVKSFDVHM-PASW-----RPLESYNYNKEEINQIVCNPKS-SFLACADDGGDVKIIDIR 133 (349)
Q Consensus 81 -~i~iwd~~~-~~~~-----~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~ 133 (349)
.|.+++... +... ..+..+ .....++++|++ .++++-..++.|..+|+.
T Consensus 221 ~~V~~i~r~~~G~~~~~~~~~~v~~~----~~p~giavdp~~g~LYvtd~~~g~V~r~d~~ 277 (496)
T 3kya_A 221 PSVYIIKRNADGTFDDRSDIQLIAAY----KQCNGATIHPINGELYFNSYEKGQVFRLDLV 277 (496)
T ss_dssp EEEEEEECCTTSCCSTTSCEEEEEEE----SCCCCEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred ceEEEEecCCCCceeecccceeeccC----CCceEEEEcCCCCeEEEEECCCCEEEEEecc
Confidence 366665443 1211 122222 345678889954 555666677889999987
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.22 E-value=0.0014 Score=53.25 Aligned_cols=116 Identities=9% Similarity=0.076 Sum_probs=68.1
Q ss_pred CCcEEEEECCCCc--EEEEeecCCCCeEEEEEecCCCEEEEE-eCCCeEEEEEccCCCcccceeeccCcccceEEEEEcc
Q 018858 37 DGCICWFDLRSKD--VQLVTDVGNGPVTSLCFKSGNEDIIYV-SSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNP 113 (349)
Q Consensus 37 dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 113 (349)
...|+..++.... ....+. ....+..++|.+.+..|+.+ ...+.|..+++........+.. ..-.....+++.+
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~--~~l~~p~glavd~ 88 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV--SGLLSPDGLACDW 88 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEE--ECCSCCCEEEEET
T ss_pred cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEc--CCCCCccEEEEEc
Confidence 3578899987653 222222 12346789999865555554 4568899999875422111111 1123466788887
Q ss_pred CC-CEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEcc
Q 018858 114 KS-SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 114 ~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
.+ ..+++-...+.|.++++........+. ........+++.|
T Consensus 89 ~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~-~~~~~P~giavdp 131 (318)
T 3sov_A 89 LGEKLYWTDSETNRIEVSNLDGSLRKVLFW-QELDQPRAIALDP 131 (318)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSCEEEEC-SSCSSEEEEEEEG
T ss_pred CCCeEEEEECCCCEEEEEECCCCcEEEEEe-CCCCCccEEEEeC
Confidence 54 455555667789999986533222222 2334567788877
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.21 E-value=0.0011 Score=53.42 Aligned_cols=105 Identities=9% Similarity=0.102 Sum_probs=55.7
Q ss_pred CceEEEeC-CC-----CcEEEEECCCCcEEEE--eecCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEEccCCCc--
Q 018858 28 PGFVASSG-ED-----GCICWFDLRSKDVQLV--TDVGNGPVTSLCFKSGNEDIIYVSSG-----KEVKSFDVHMPAS-- 92 (349)
Q Consensus 28 ~~~l~t~~-~d-----g~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~-- 92 (349)
+.+++.|+ .+ ..+.+||..+.+.... +....... +++ ..++..++.|+.+ ..+.+||..+.+.
T Consensus 15 ~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~-~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~ 92 (301)
T 2vpj_A 15 EVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYV-ASV-SLHDRIYVIGGYDGRSRLSSVECLDYTADEDGV 92 (301)
T ss_dssp EEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSC-EEE-EETTEEEEECCBCSSCBCCCEEEEETTCCTTCC
T ss_pred CEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccc-cEE-EECCEEEEEcCCCCCccCceEEEEECCCCCCCe
Confidence 45666776 32 3688999887653221 11111111 222 2356667777654 4689999887541
Q ss_pred ccceeeccCcccceEEEEEccCCCEEEEEcCCC-----cEEEEEcCCce
Q 018858 93 WRPLESYNYNKEEINQIVCNPKSSFLACADDGG-----DVKIIDIRQHC 136 (349)
Q Consensus 93 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~ 136 (349)
...+..++........+.+ +++.++.|+.++ .+.+||+.+.+
T Consensus 93 W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~ 139 (301)
T 2vpj_A 93 WYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ 139 (301)
T ss_dssp CEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred eEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence 2333333222222222222 566777776543 57888877654
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=98.19 E-value=0.0012 Score=52.95 Aligned_cols=168 Identities=8% Similarity=0.093 Sum_probs=104.2
Q ss_pred ecCCCCeEEEEEecCCCEEEEEe-CCCeEEEEEccCCCcccceeeccC-----c-ccceEEEEE---ccCCCEEEEEc--
Q 018858 55 DVGNGPVTSLCFKSGNEDIIYVS-SGKEVKSFDVHMPASWRPLESYNY-----N-KEEINQIVC---NPKSSFLACAD-- 122 (349)
Q Consensus 55 ~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~-----~-~~~v~~~~~---~~~~~~l~~~~-- 122 (349)
.....-..+++|.+....+..++ ..++|..|+...+.. ..+ .+.. . ...+..+.| .|+++++++..
T Consensus 9 ~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~-~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~ 86 (334)
T 2p9w_A 9 KVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSH-FNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNA 86 (334)
T ss_dssp CCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCE-EEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEET
T ss_pred cCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeE-EEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccc
Confidence 33344455788988666666666 789999999874422 222 2221 1 124578999 68877777543
Q ss_pred -----------CCCcEEEEEcC---CceEeceecc-c-----------cccceeEEEEccCCCCCCCCCCCCCCccccCC
Q 018858 123 -----------DGGDVKIIDIR---QHCLYKSLRA-G-----------HSSICSSVQFIPWKPWEGLPENNGNAGQCYNP 176 (349)
Q Consensus 123 -----------~dg~i~i~d~~---~~~~~~~~~~-~-----------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (349)
.+..|..||+. +++.+..... . .......++..+
T Consensus 87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-------------------- 146 (334)
T 2p9w_A 87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-------------------- 146 (334)
T ss_dssp TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT--------------------
T ss_pred ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC--------------------
Confidence 25679999998 7766544331 0 112356677766
Q ss_pred ceeEEeecCcccccCCCCcEEEEEcCC-CeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeee
Q 018858 177 AFVHAIAIPDADMLDKTNKICVVAKGD-GVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLH 255 (349)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (349)
+|+..++++.. +.|..++... +.+. .+.
T Consensus 147 ----------------~GnaYVt~s~~~~~I~rV~pdG------------------------~~~~-----------~~~ 175 (334)
T 2p9w_A 147 ----------------DGNSYVAFALGMPAIARVSADG------------------------KTVS-----------TFA 175 (334)
T ss_dssp ----------------TSCEEEEEEESSCEEEEECTTS------------------------CCEE-----------EEE
T ss_pred ----------------CCCEEEeCCCCCCeEEEEeCCC------------------------CEEe-----------eee
Confidence 78888888877 7766665543 2111 000
Q ss_pred eeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCC
Q 018858 256 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR 298 (349)
Q Consensus 256 ~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 298 (349)
............+.|+++ |+|+.|++...+|.|..+|+..
T Consensus 176 ~~~~~~~~~~G~nGIv~~---pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 176 WESGNGGQRPGYSGITFD---PHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp ECCCCSSSCCSCSEEEEE---TTTTEEEEESSSSSEEEEECSS
T ss_pred ecCCCcccccCcceEEEe---CCCCEEEEEcCCCeEEEEcCCC
Confidence 000011122346789999 8998888887799999999885
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.18 E-value=0.0017 Score=53.00 Aligned_cols=275 Identities=9% Similarity=-0.048 Sum_probs=136.1
Q ss_pred ceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEee----cCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCC
Q 018858 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD----VGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP 90 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 90 (349)
...+.++.|.++ +..++. +.+|.| +...+.++.-..+. .....+..+.+.+ +. ++.++..+.|.. ....+
T Consensus 35 ~~~~~~v~~~~~-~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~-S~DgG 108 (327)
T 2xbg_A 35 TATILDMSFIDR-HHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIMLH-TTDGG 108 (327)
T ss_dssp SSCEEEEEESSS-SCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEEEE-ESSTT
T ss_pred CCcEEEEEECCC-CcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeEEE-ECCCC
Confidence 457889988765 556664 456655 33334343211111 1245688899986 44 444555664443 33334
Q ss_pred CcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCC
Q 018858 91 ASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNA 170 (349)
Q Consensus 91 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 170 (349)
+....+.........+..+.+.+++..++.+. +|.|.. ....++.-..........+..+.+.|
T Consensus 109 ~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~-------------- 172 (327)
T 2xbg_A 109 QSWSQIPLDPKLPGSPRLIKALGNGSAEMITN-VGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSP-------------- 172 (327)
T ss_dssp SSCEECCCCTTCSSCEEEEEEEETTEEEEEET-TCCEEE-ESSTTSSEEEEECSCCCCEEEEEECT--------------
T ss_pred CCceECccccCCCCCeEEEEEECCCCEEEEeC-CccEEE-EcCCCCCCEEeecCCCcceEEEEEcC--------------
Confidence 44443332211224467777777676666554 554432 11223222222213344677777777
Q ss_pred ccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeee--eee
Q 018858 171 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI--LDQ 248 (349)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 248 (349)
++.+++++...+..+-.|-....-.. ........+..+++.+++..+++... .-.
T Consensus 173 ----------------------~~~~~~~g~~G~~~~S~d~gG~tW~~-~~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~ 229 (327)
T 2xbg_A 173 ----------------------SGEYVAVSSRGSFYSTWEPGQTAWEP-HNRTTSRRLHNMGFTPDGRLWMIVNGGKIAF 229 (327)
T ss_dssp ----------------------TSCEEEEETTSSEEEEECTTCSSCEE-EECCSSSCEEEEEECTTSCEEEEETTTEEEE
T ss_pred ----------------------CCcEEEEECCCcEEEEeCCCCCceeE-CCCCCCCccceeEECCCCCEEEEeCCceEEE
Confidence 67777766544433333321111111 11223345667778888876654211 000
Q ss_pred c--C-ceeeeeeeee-cCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEE
Q 018858 249 S--G-GKRLHLDYSV-GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWL 324 (349)
Q Consensus 249 ~--~-~~~~~~~~~~-~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 324 (349)
. . ...+..+..- ..+...+..+.+. +++.+++++. ++.| ++..+.++. . ..+.........+..+
T Consensus 230 s~~D~G~tW~~~~~~~~~~~~~~~~v~~~---~~~~~~~~g~-~g~i-~~S~DgG~t-W-----~~~~~~~~~~~~~~~v 298 (327)
T 2xbg_A 230 SDPDNSENWGELLSPLRRNSVGFLDLAYR---TPNEVWLAGG-AGAL-LCSQDGGQT-W-----QQDVDVKKVPSNFYKI 298 (327)
T ss_dssp EETTEEEEECCCBCTTSSCCSCEEEEEES---SSSCEEEEES-TTCE-EEESSTTSS-C-----EECGGGTTSSSCCCEE
T ss_pred ecCCCCCeeEeccCCcccCCcceEEEEec---CCCEEEEEeC-CCeE-EEeCCCCcc-c-----EEcCccCCCCCCeEEE
Confidence 1 1 1112111111 0122357888888 6777666654 6766 344444421 0 1111111234567778
Q ss_pred EeecCCCCcEEEeeCCCeEEEee
Q 018858 325 CTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 325 ~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
.+.+ ++ .+++++.+|.|.-++
T Consensus 299 ~~~~-~~-~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 299 LFFS-PD-QGFILGQKGILLRYV 319 (327)
T ss_dssp EEEE-TT-EEEEECSTTEEEEEC
T ss_pred EEEC-CC-ceEEEcCCceEEEEc
Confidence 8754 43 577788899877654
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00039 Score=55.79 Aligned_cols=162 Identities=13% Similarity=0.150 Sum_probs=103.7
Q ss_pred ceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEE-eec----CC--CCeEEEEE---ecCCCEEEEEe-------
Q 018858 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLV-TDV----GN--GPVTSLCF---KSGNEDIIYVS------- 77 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~-~~~----~~--~~v~~~~~---~~~~~~l~~~~------- 77 (349)
.---.+++|++.++.++++.-..++|..||...+..... +.. .. ..+..+.| .|++.++++..
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF 91 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence 334457889987455666665789999999876654333 221 11 13578999 58877666533
Q ss_pred ------CCCeEEEEEcc---CCCcccceee--cc-C-------cccceEEEEEccCCCEEEEEcCC-CcEEEEEcCCceE
Q 018858 78 ------SGKEVKSFDVH---MPASWRPLES--YN-Y-------NKEEINQIVCNPKSSFLACADDG-GDVKIIDIRQHCL 137 (349)
Q Consensus 78 ------~dg~i~iwd~~---~~~~~~~~~~--~~-~-------~~~~v~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~ 137 (349)
.+..|..+|+. +++....... .. + .......++..++|+..++++.. +.|..++.....
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~- 170 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT- 170 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC-
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE-
Confidence 15779999998 6654433221 10 0 11247899999999988888877 777777754332
Q ss_pred ecee--cc---ccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEcc
Q 018858 138 YKSL--RA---GHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE 212 (349)
Q Consensus 138 ~~~~--~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 212 (349)
+..+ .. ......+.|++.| +++.|++....|.|..+|++
T Consensus 171 ~~~~~~~~~~~~~~~G~nGIv~~p------------------------------------dg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 171 VSTFAWESGNGGQRPGYSGITFDP------------------------------------HSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp EEEEEECCCCSSSCCSCSEEEEET------------------------------------TTTEEEEESSSSSEEEEECS
T ss_pred EeeeeecCCCcccccCcceEEEeC------------------------------------CCCEEEEEcCCCeEEEEcCC
Confidence 2211 10 1112255777777 78888887779999999988
Q ss_pred C
Q 018858 213 S 213 (349)
Q Consensus 213 ~ 213 (349)
.
T Consensus 215 ~ 215 (334)
T 2p9w_A 215 K 215 (334)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=0.005 Score=54.88 Aligned_cols=159 Identities=11% Similarity=0.023 Sum_probs=93.6
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcE-EEEeecCCCCeEEEEEecCCCEEEEE-eCCCeEEEEEccCCCcc
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV-QLVTDVGNGPVTSLCFKSGNEDIIYV-SSGKEVKSFDVHMPASW 93 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~ 93 (349)
+....++|++.++.++++-...+.|..++++.... ...+...-.....+++.+.+..|+.+ ...+.|.+.++.... .
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~-~ 118 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-R 118 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-C
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC-E
Confidence 34678899987455555655568898898875432 22333333568899999866655554 456899999987432 2
Q ss_pred cceeeccCcccceEEEEEccCCCEEEEEcC--CCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCc
Q 018858 94 RPLESYNYNKEEINQIVCNPKSSFLACADD--GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAG 171 (349)
Q Consensus 94 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 171 (349)
+.+.. ..-.....|++.|.+.+|+.... .+.|...++.......... ..-.....++++++
T Consensus 119 ~~l~~--~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~-~~~~~P~Glald~~-------------- 181 (619)
T 3s94_A 119 KVLFW--QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN-SEIYWPNGLTLDYE-------------- 181 (619)
T ss_dssp EEEEC--SSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-SSCSSEEEEEEETT--------------
T ss_pred EEEEe--CCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEe-CCCCCCcEEEEEcc--------------
Confidence 22221 12345778999997655554442 3567766765332222222 22334567777762
Q ss_pred cccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC
Q 018858 172 QCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 213 (349)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 213 (349)
+++++++-...+.|..+|+..
T Consensus 182 ---------------------~~~LY~aD~~~~~I~~~~~dG 202 (619)
T 3s94_A 182 ---------------------EQKLYWADAKLNFIHKSNLDG 202 (619)
T ss_dssp ---------------------TTEEEEEETTTCCEEEESSSC
T ss_pred ---------------------CCEEEEEeCCCCeEEEecCCC
Confidence 344445545667888888875
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=0.0055 Score=54.69 Aligned_cols=158 Identities=6% Similarity=0.020 Sum_probs=99.1
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEE-eCCCeEEEEEccCCCccc
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYV-SSGKEVKSFDVHMPASWR 94 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~ 94 (349)
.....++|++.++.++++-..++.|..+++........+.........+++.+.+..|+.+ ...+.|.+.++.... ..
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~-~~ 115 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH-RQ 115 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT-CE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc-EE
Confidence 3567899999756666676778899999987654443443333456789998766666554 456789999987432 22
Q ss_pred ceeeccCcccceEEEEEccCCCEEEEEc--CCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCcc
Q 018858 95 PLESYNYNKEEINQIVCNPKSSFLACAD--DGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQ 172 (349)
Q Consensus 95 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 172 (349)
.+.. ..-.....+++.|....|+... ..+.|...++..... ..+. ..-.....++++++
T Consensus 116 ~l~~--~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~~l~-~~~~~P~GlalD~~--------------- 176 (628)
T 4a0p_A 116 VLVW--KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-TTLV-PNVGRANGLTIDYA--------------- 176 (628)
T ss_dssp EEEC--SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEE-CSCSSEEEEEEETT---------------
T ss_pred EEEe--CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-EEEE-CCCCCcceEEEccc---------------
Confidence 2211 1234578999998655555444 246787777764332 2222 23345677888772
Q ss_pred ccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC
Q 018858 173 CYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 213 (349)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 213 (349)
.++++++-...+.|..+|+..
T Consensus 177 --------------------~~~LY~aD~~~~~I~~~d~dG 197 (628)
T 4a0p_A 177 --------------------KRRLYWTDLDTNLIESSNMLG 197 (628)
T ss_dssp --------------------TTEEEEEETTTTEEEEEETTS
T ss_pred --------------------cCEEEEEECCCCEEEEEcCCC
Confidence 344444445678899998875
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.0029 Score=50.91 Aligned_cols=104 Identities=13% Similarity=0.202 Sum_probs=53.7
Q ss_pred CceEEEeCCC----CcEEEEECCCCcEEEE--eecCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEEccCCCcccce
Q 018858 28 PGFVASSGED----GCICWFDLRSKDVQLV--TDVGNGPVTSLCFKSGNEDIIYVSSG-----KEVKSFDVHMPASWRPL 96 (349)
Q Consensus 28 ~~~l~t~~~d----g~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~ 96 (349)
+.+++.|+.+ ..+..||..+.+-... +......- +++. -++..++.|+.+ ..+.+||..+.+ ...+
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~-W~~~ 92 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRA-GMVY-MAGLVFAVGGFNGSLRVRTVDSYDPVKDQ-WTSV 92 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEESCBCSSSBCCCEEEEETTTTE-EEEE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccc-eEEE-ECCEEEEEeCcCCCccccceEEECCCCCc-eeeC
Confidence 3566666643 3578899887653222 11111111 2222 256666676644 368889987643 3333
Q ss_pred eeccCcccceEEEEEccCCCEEEEEcCCC-----cEEEEEcCCce
Q 018858 97 ESYNYNKEEINQIVCNPKSSFLACADDGG-----DVKIIDIRQHC 136 (349)
Q Consensus 97 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~ 136 (349)
...+........+.+ +++.++.|+.++ .+.+||+.+.+
T Consensus 93 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~ 135 (302)
T 2xn4_A 93 ANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNE 135 (302)
T ss_dssp CCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTE
T ss_pred CCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCe
Confidence 333222222222222 566777777553 47778877554
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00015 Score=65.64 Aligned_cols=117 Identities=10% Similarity=0.004 Sum_probs=65.8
Q ss_pred CcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEe-CCCeEEEEEccCCCc-ccceeeccCcccceEEEEEccCC
Q 018858 38 GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVS-SGKEVKSFDVHMPAS-WRPLESYNYNKEEINQIVCNPKS 115 (349)
Q Consensus 38 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~ 115 (349)
..|+..++...+....+.. ...+..++|.+.+..|+.+. ..+.|+.+++..... ......+.........|++.+.+
T Consensus 386 ~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~ 464 (699)
T 1n7d_A 386 HEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 464 (699)
T ss_dssp TC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSS
T ss_pred cceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeC
Confidence 5688888877665444332 34567889998777776664 457899999874100 00111111111235567887544
Q ss_pred -CEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEcc
Q 018858 116 -SFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 116 -~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
+++++-...+.|.++++........+. ........+++.|
T Consensus 465 g~LY~tD~~~~~I~v~d~dg~~~~~l~~-~~~~~P~giavDp 505 (699)
T 1n7d_A 465 SNIYWTDSVLGTVSVADTKGVKRKTLFR-EQGSKPRAIVVDP 505 (699)
T ss_dssp SBCEECCTTTSCEEEEBSSSCCEEEECC-CSSCCCCCEECCS
T ss_pred CcEEEEeccCCeEEEEecCCCceEEEEe-CCCCCcceEEEcc
Confidence 445555567789999987554332222 2223456677776
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.005 Score=49.57 Aligned_cols=103 Identities=11% Similarity=0.069 Sum_probs=55.7
Q ss_pred ceEEEeCC--CCcEEEEECCCCcEEEE--eecCCCCeEEEEEecCCCEEEEEeCC----CeEEEEEccCCCcccceeecc
Q 018858 29 GFVASSGE--DGCICWFDLRSKDVQLV--TDVGNGPVTSLCFKSGNEDIIYVSSG----KEVKSFDVHMPASWRPLESYN 100 (349)
Q Consensus 29 ~~l~t~~~--dg~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~ 100 (349)
.+++.|+. ...+.+||..+.+-... +.........+. -++..++.|+.+ ..+.+||..+.+ ...+..++
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~-W~~~~~~p 89 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDS-WYSKLGPP 89 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTE-EEEEECCS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCe-EEECCCCC
Confidence 45556654 35788999887654321 111111222222 256666777654 578899988653 33333332
Q ss_pred CcccceEEEEEccCCCEEEEEcCC------CcEEEEEcCCce
Q 018858 101 YNKEEINQIVCNPKSSFLACADDG------GDVKIIDIRQHC 136 (349)
Q Consensus 101 ~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~ 136 (349)
........+.+ +++.++.|+.+ ..+.+||..+.+
T Consensus 90 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~ 129 (306)
T 3ii7_A 90 TPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTES 129 (306)
T ss_dssp SCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTE
T ss_pred ccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCc
Confidence 22222222222 56677777754 458888887654
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.0036 Score=53.16 Aligned_cols=117 Identities=10% Similarity=0.015 Sum_probs=64.8
Q ss_pred CceeeeEEEEecCCCceEEEeCCC---C-cEEEEECCCCcE-EEEeecCCCCeEEEEEec-CCCEEEEEeCCCeEEEEEc
Q 018858 14 HKATATCCIASRDRPGFVASSGED---G-CICWFDLRSKDV-QLVTDVGNGPVTSLCFKS-GNEDIIYVSSGKEVKSFDV 87 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~d---g-~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~ 87 (349)
.......++++++ ++++++-... . .+...+...+.. ...+. .......++++| ++...++-..++.|+.++.
T Consensus 180 ~~~~P~giavd~d-G~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~ 257 (433)
T 4hw6_A 180 NIGQCADVNFTLN-GDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDP 257 (433)
T ss_dssp CCSCEEEEEECTT-CCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECT
T ss_pred CCCCccEEEECCC-CCEEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEEC
Confidence 3345778899998 6655544321 1 133333222111 11222 223456688899 5665555556788999988
Q ss_pred cCCCcccceeeccCcccceEEEEEccCCCEE-EEEcCCCcEEEEEcC
Q 018858 88 HMPASWRPLESYNYNKEEINQIVCNPKSSFL-ACADDGGDVKIIDIR 133 (349)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~ 133 (349)
.++.....+.... .......++|+|++++| ++-...+.|+.++..
T Consensus 258 ~~g~~~~~~~~~~-~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 258 ATGTLTEEEVMMD-TKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp TTCCEEEEEEECS-CCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred CCCeEEEEEeccC-CCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 7554312222211 11223469999999855 455566789998865
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.001 Score=56.51 Aligned_cols=153 Identities=9% Similarity=0.054 Sum_probs=90.3
Q ss_pred ceEEEEEcc-CCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEee
Q 018858 105 EINQIVCNP-KSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIA 183 (349)
Q Consensus 105 ~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (349)
....++++| ++..|+++...+.|+.+|+..+....... .......++|++
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~--~~~~P~~ia~d~--------------------------- 188 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS--GLSKVRTICWTH--------------------------- 188 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC--CCSCEEEEEECT---------------------------
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec--CCCCcceEEEeC---------------------------
Confidence 467889998 45556655555789999988766543333 445577888888
Q ss_pred cCcccccCCCCcEEEEEcC-CC----eEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeee
Q 018858 184 IPDADMLDKTNKICVVAKG-DG----VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDY 258 (349)
Q Consensus 184 ~~~~~~~~~~~~~l~~~~~-dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (349)
+++.|+++.. ++ .+..++.... +. ....+.
T Consensus 189 ---------~G~~lyvad~~~~~~~~~v~~~~~~g~------------------------~~------------~~~~l~ 223 (430)
T 3tc9_A 189 ---------EADSMIITNDQNNNDRPNNYILTRESG------------------------FK------------VITELT 223 (430)
T ss_dssp ---------TSSEEEEEECCSCTTSEEEEEEEGGGT------------------------SC------------SEEEEE
T ss_pred ---------CCCEEEEEeCCCCcccceEEEEeCCCc------------------------ee------------eeeeec
Confidence 7775555543 22 2333332211 00 001111
Q ss_pred eecCCCcceEEEEEeeecC-CccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEe
Q 018858 259 SVGGHTAAASCVAFSMFGE-RGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVC 337 (349)
Q Consensus 259 ~~~~h~~~i~~i~~~~~~~-~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 337 (349)
. ......++++ | ++.++++-..++.|+.++...... ..+.. .........++++| ++++|+.+
T Consensus 224 ~----~~~p~giavd---p~~g~lyv~d~~~~~V~~~~~~~~~~-------~~~~~-~~~~~~P~gia~~p-dG~~lyv~ 287 (430)
T 3tc9_A 224 K----GQNCNGAETH---PINGELYFNSWNAGQVFRYDFTTQET-------TPLFT-IQDSGWEFHIQFHP-SGNYAYIV 287 (430)
T ss_dssp E----CSSCCCEEEC---TTTCCEEEEETTTTEEEEEETTTTEE-------EEEEE-CSSSSCCEEEEECT-TSSEEEEE
T ss_pred c----CCCceEEEEe---CCCCEEEEEECCCCEEEEEECCCCcE-------EEEEE-cCCCCcceeEEEcC-CCCEEEEE
Confidence 1 1234677888 7 677777766788999999886521 01111 11224567899988 77755555
Q ss_pred -eCCCeEEEee
Q 018858 338 -DTSKVVKVYS 347 (349)
Q Consensus 338 -~~dg~i~iw~ 347 (349)
...+.|..++
T Consensus 288 d~~~~~I~~~~ 298 (430)
T 3tc9_A 288 VVNQHYILRSD 298 (430)
T ss_dssp ETTTTEEEEEE
T ss_pred ECCCCEEEEEe
Confidence 4667888765
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0075 Score=48.63 Aligned_cols=104 Identities=10% Similarity=0.101 Sum_probs=54.3
Q ss_pred CceEEEeCCC----CcEEEEECCCCcEEEE--eecCCCCeEEEEEecCCCEEEEEeC----C-----CeEEEEEccCCCc
Q 018858 28 PGFVASSGED----GCICWFDLRSKDVQLV--TDVGNGPVTSLCFKSGNEDIIYVSS----G-----KEVKSFDVHMPAS 92 (349)
Q Consensus 28 ~~~l~t~~~d----g~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~----d-----g~i~iwd~~~~~~ 92 (349)
+.+++.|+.+ ..+.+||..+.+-... +....... +++. -++..++.|+. + ..+.+||..+.+
T Consensus 25 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~- 101 (308)
T 1zgk_A 25 RLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ- 101 (308)
T ss_dssp CCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTE-
T ss_pred CEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCe-
Confidence 5677777632 3688999887654322 11111111 2222 25666666665 2 368888987643
Q ss_pred ccceeeccCcccceEEEEEccCCCEEEEEcCC-----CcEEEEEcCCce
Q 018858 93 WRPLESYNYNKEEINQIVCNPKSSFLACADDG-----GDVKIIDIRQHC 136 (349)
Q Consensus 93 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~ 136 (349)
...+..++........+.+ +++.++.|+.+ ..+.+||+.+.+
T Consensus 102 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 148 (308)
T 1zgk_A 102 WSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDE 148 (308)
T ss_dssp EEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTE
T ss_pred EeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCe
Confidence 2333322222222222222 56677777643 357888887654
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0011 Score=54.94 Aligned_cols=151 Identities=10% Similarity=-0.022 Sum_probs=89.9
Q ss_pred CCcEEEEEcCCCeEEEEEccCceeeeecCCC---CCCccceeeeeccccEEEEeeeeeecCcee---------------e
Q 018858 193 TNKICVVAKGDGVVDVINIESELNISRSKST---TKPLKGSQSTSKVNIRDAEMEILDQSGGKR---------------L 254 (349)
Q Consensus 193 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~ 254 (349)
++..++++ .++.||.-++.....-+.+..+ ....+..+..+|+|.++|..+.....+..- .
T Consensus 31 n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~ 109 (452)
T 3pbp_A 31 NGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAF 109 (452)
T ss_dssp TTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTT
T ss_pred CCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccccccccc
Confidence 44545444 3467777777643222222222 233678899999999999865443321110 0
Q ss_pred ee-eeeec----CCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceec-ccccceeeeccccccceEEEEeec
Q 018858 255 HL-DYSVG----GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT-SINNDLLIKNINLNKKVNWLCTTP 328 (349)
Q Consensus 255 ~~-~~~~~----~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~ 328 (349)
++ ...+. ....+|..+.|+|.+..+..|++-..|+.|++||+........ ................|.+++|.+
T Consensus 110 q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~ 189 (452)
T 3pbp_A 110 QIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSK 189 (452)
T ss_dssp EEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECT
T ss_pred ceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcC
Confidence 00 01111 1246799999998777888999999999999999997432221 000000011222336788999977
Q ss_pred CCCCcEEEee--CCCeEEE
Q 018858 329 TESENLVVCD--TSKVVKV 345 (349)
Q Consensus 329 ~~~~~l~~~~--~dg~i~i 345 (349)
++=.|...+ ..|.|+-
T Consensus 190 -~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 190 -DGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp -TSSCEEEEECTTSCEEEE
T ss_pred -CCcEEEEEecCCCCCEEE
Confidence 676677754 7787763
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0091 Score=48.63 Aligned_cols=134 Identities=13% Similarity=0.151 Sum_probs=73.1
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcE-EEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCccc
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV-QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWR 94 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 94 (349)
+.+..+.+.++ +..++.+. +|.|.. ..+.++. ..........+..+++.+++.+++.+...+..+-.|- .+....
T Consensus 122 ~~~~~i~~~~~-~~~~~~~~-~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~-gG~tW~ 197 (327)
T 2xbg_A 122 GSPRLIKALGN-GSAEMITN-VGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEP-GQTAWE 197 (327)
T ss_dssp SCEEEEEEEET-TEEEEEET-TCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECT-TCSSCE
T ss_pred CCeEEEEEECC-CCEEEEeC-CccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCC-CCCcee
Confidence 45677887766 56666554 554432 2223332 2222344567889999998887766654333333332 133333
Q ss_pred ceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccc---cccceeEEEEcc
Q 018858 95 PLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAG---HSSICSSVQFIP 156 (349)
Q Consensus 95 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~~~ 156 (349)
.+.. .....+..+.+.+++..++. +.+|.+++.+...++.-..+... ....+.++.+.+
T Consensus 198 ~~~~--~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~ 259 (327)
T 2xbg_A 198 PHNR--TTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRT 259 (327)
T ss_dssp EEEC--CSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESS
T ss_pred ECCC--CCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecC
Confidence 3322 12356788889888876554 45677777643334433333201 123467777776
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.78 E-value=0.01 Score=48.15 Aligned_cols=197 Identities=11% Similarity=0.118 Sum_probs=111.8
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccC----CC---EEEEEcC---CCcEEEEEcC--Cce
Q 018858 69 GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPK----SS---FLACADD---GGDVKIIDIR--QHC 136 (349)
Q Consensus 69 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~~~~~---dg~i~i~d~~--~~~ 136 (349)
....++.....+-+.+||+ +++.. ..+.. +.+..+..-|. ++ ++++... ++.|.+|++. +++
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l---~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~ 112 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKML---HSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT 112 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEE---EEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEE---EEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc
Confidence 4455666667788999999 55443 33321 34555555442 22 2333333 4789999773 333
Q ss_pred Eeceeccc-----cc-cceeEEEE--ccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCc-EEEEEcCCCeEE
Q 018858 137 LYKSLRAG-----HS-SICSSVQF--IPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK-ICVVAKGDGVVD 207 (349)
Q Consensus 137 ~~~~~~~~-----~~-~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~ 207 (349)
+..+... .. ..+..+++ +|. .+. ++++...+|.+.
T Consensus 113 -l~~i~~~~~pv~t~~~~pyGlcly~~~~-----------------------------------~g~~yafV~~k~G~~~ 156 (355)
T 3amr_A 113 -LQSMTDPDHPIATAINEVYGFTLYHSQK-----------------------------------TGKYYAMVTGKEGEFE 156 (355)
T ss_dssp -EEECSCTTSCEECCCSSCCCEEEEECTT-----------------------------------TCCEEEEEECSSSEEE
T ss_pred -eeeccccccCcCCCCCCeeEEEEEecCC-----------------------------------CCcEEEEEECCCCeEE
Confidence 3333200 11 44556666 441 343 677888899999
Q ss_pred EEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeC
Q 018858 208 VINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN 287 (349)
Q Consensus 208 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~ 287 (349)
.|++.... +| ....+.+.++.- .+.+-.+... +....|+.+-+
T Consensus 157 q~~l~~~~--------------------~g-------------~~~~~lVR~f~l-gsq~EgcvvD---d~~g~Lyv~eE 199 (355)
T 3amr_A 157 QYELKADK--------------------NG-------------YISGKKVRAFKM-NSQTEGMAAD---DEYGRLYIAEE 199 (355)
T ss_dssp EEEEEECT--------------------TS-------------CEEEEEEEEEEC-SSCEEEEEEE---TTTTEEEEEET
T ss_pred EEEEEeCC--------------------CC-------------cccceEEEEecC-CCCcceEEEc---CCCCeEEEecc
Confidence 99985310 00 012244455543 2467788888 78889999999
Q ss_pred CCeEEEEecCCCcceecccccceeeec-cc-cccceEEEEeec-CCCC-cEEEee-CCCeEEEeeC
Q 018858 288 DKLVKVWDCSRFQGVQTSINNDLLIKN-IN-LNKKVNWLCTTP-TESE-NLVVCD-TSKVVKVYSI 348 (349)
Q Consensus 288 d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~-~~~~v~~~~~~~-~~~~-~l~~~~-~dg~i~iw~~ 348 (349)
|.-|+.++.+...... ..++... .+ ....+..|++.+ .+++ +|++++ .+.+..+||.
T Consensus 200 d~GIw~~da~p~~~~~----~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr 261 (355)
T 3amr_A 200 DEAIWKFSAEPDGGSN----GTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDR 261 (355)
T ss_dssp TTEEEEEECSTTSCSC----CEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEES
T ss_pred cceEEEEeCCcCCCCC----ceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEEC
Confidence 8777777755221000 0233222 12 334678888753 2344 566665 6778999986
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=0.014 Score=48.00 Aligned_cols=73 Identities=11% Similarity=0.083 Sum_probs=45.1
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeec---cCcccceEEEEEccC---CCEEEEEcC----C---
Q 018858 58 NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESY---NYNKEEINQIVCNPK---SSFLACADD----G--- 124 (349)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~v~~~~~~~~---~~~l~~~~~----d--- 124 (349)
-.....++|.|+|+ |+++..+|.|++++ .+++ ..+..+ .........|+++|+ +..|.++.. +
T Consensus 28 l~~P~~ia~~pdG~-l~V~e~~g~I~~~d-~~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVTERPGRLVLIS-PSGK--KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI 103 (354)
T ss_dssp CSCEEEEEEEETTE-EEEEETTTEEEEEC-SSCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred CCCCeEEEEcCCCe-EEEEeCCCEEEEEe-CCCc--eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence 34578899999997 55556679999887 3332 222221 112356889999997 444544332 2
Q ss_pred -CcEEEEEcCC
Q 018858 125 -GDVKIIDIRQ 134 (349)
Q Consensus 125 -g~i~i~d~~~ 134 (349)
..|..|+...
T Consensus 104 ~~~v~r~~~~~ 114 (354)
T 3a9g_A 104 RNRVIRGRLDG 114 (354)
T ss_dssp EEEEEEEEECS
T ss_pred ceEEEEEEECC
Confidence 4577777654
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.014 Score=46.84 Aligned_cols=104 Identities=13% Similarity=0.187 Sum_probs=56.6
Q ss_pred CceEEEeCCC-----CcEEEEECCCCc---EEEE--eecCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEEccCCCc
Q 018858 28 PGFVASSGED-----GCICWFDLRSKD---VQLV--TDVGNGPVTSLCFKSGNEDIIYVSSG-----KEVKSFDVHMPAS 92 (349)
Q Consensus 28 ~~~l~t~~~d-----g~i~vwd~~~~~---~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~ 92 (349)
+.+++.|+.+ ..+.+||..+.+ .... +.........+.+ +++.++.|+.+ ..+.+||..+.+
T Consensus 63 ~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~- 139 (301)
T 2vpj_A 63 DRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ- 139 (301)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE-
T ss_pred CEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCe-
Confidence 5677777754 468899988765 3222 2211122222222 56666666643 368899987653
Q ss_pred ccceeeccCcccceEEEEEccCCCEEEEEcCC-----CcEEEEEcCCce
Q 018858 93 WRPLESYNYNKEEINQIVCNPKSSFLACADDG-----GDVKIIDIRQHC 136 (349)
Q Consensus 93 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~ 136 (349)
...+...+........+.+ +++.++.|+.+ ..+.+||+.+.+
T Consensus 140 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~ 186 (301)
T 2vpj_A 140 WSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGH 186 (301)
T ss_dssp EEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred EEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCc
Confidence 3333333222222222222 56777777654 358888887654
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.014 Score=46.75 Aligned_cols=104 Identities=10% Similarity=0.053 Sum_probs=54.8
Q ss_pred CceEEEeCCC-----CcEEEEECCCCcEEEE--eecCCCCeEEEEEecCCCEEEEEeCCC-----eEEEEEccCCCcccc
Q 018858 28 PGFVASSGED-----GCICWFDLRSKDVQLV--TDVGNGPVTSLCFKSGNEDIIYVSSGK-----EVKSFDVHMPASWRP 95 (349)
Q Consensus 28 ~~~l~t~~~d-----g~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~ 95 (349)
+.+++.|+.+ ..+.+||..+.+-... +.........+. -+++.++.|+.++ .+.+||+.+.+ ...
T Consensus 62 ~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~-W~~ 138 (302)
T 2xn4_A 62 GLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNE-WFH 138 (302)
T ss_dssp TEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTE-EEE
T ss_pred CEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCe-Eee
Confidence 5677777754 3588899887654322 111111122222 2566777776543 57888887643 233
Q ss_pred eeeccCcccceEEEEEccCCCEEEEEcCC-------CcEEEEEcCCce
Q 018858 96 LESYNYNKEEINQIVCNPKSSFLACADDG-------GDVKIIDIRQHC 136 (349)
Q Consensus 96 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~~ 136 (349)
+...+........+.+ +++.++.|+.+ ..+.+||+.+.+
T Consensus 139 ~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~ 184 (302)
T 2xn4_A 139 VAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNE 184 (302)
T ss_dssp ECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTE
T ss_pred cCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCc
Confidence 3322222122222222 56666776642 348888887654
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.017 Score=46.67 Aligned_cols=102 Identities=9% Similarity=-0.045 Sum_probs=53.6
Q ss_pred eEEEeCCCCcEEEEECCCCcEEE-EeecCCCCeEEEEEecCCCEEEEEeC-----C------CeEEEEEccCCCccccee
Q 018858 30 FVASSGEDGCICWFDLRSKDVQL-VTDVGNGPVTSLCFKSGNEDIIYVSS-----G------KEVKSFDVHMPASWRPLE 97 (349)
Q Consensus 30 ~l~t~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~-----d------g~i~iwd~~~~~~~~~~~ 97 (349)
+++.|+ ..+..||..+++-.. .+..........+...++..++.|+. . ..+.+||..+.+ ...+.
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~-W~~~~ 83 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSE-WLGMP 83 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTE-EEECC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCe-EEECC
Confidence 455566 469999998877432 22211122223333456777777773 1 137788887643 23333
Q ss_pred eccCcccceEEEEEccCCCEEEEEcCC--------CcEEEEEcCCce
Q 018858 98 SYNYNKEEINQIVCNPKSSFLACADDG--------GDVKIIDIRQHC 136 (349)
Q Consensus 98 ~~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~ 136 (349)
..+........+.+ +++.++.|+.+ ..+.+||..+.+
T Consensus 84 ~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~ 128 (315)
T 4asc_A 84 PLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFK 128 (315)
T ss_dssp CBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTE
T ss_pred CCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCc
Confidence 22211111222222 56667777632 348888887653
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.021 Score=47.03 Aligned_cols=103 Identities=12% Similarity=0.091 Sum_probs=60.4
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcE--EEEee---cCCCCeEEEEEecC---CCEEEEEeC-C-----Ce
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV--QLVTD---VGNGPVTSLCFKSG---NEDIIYVSS-G-----KE 81 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~--~~~~~---~~~~~v~~~~~~~~---~~~l~~~~~-d-----g~ 81 (349)
..-..++|.|+ ++++++ ..+|.|.+++ +++. +..+. ........++++|+ +..|.++.. . +.
T Consensus 31 ~~P~~ia~~pd-G~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 31 EVPWALAFLPD-GGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp SCEEEEEECTT-SCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCceEEEEcCC-CeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 34568999998 775555 4569999998 4432 22221 12356889999998 555554433 2 67
Q ss_pred EEEEEccCCCc--cc-ceeecc---CcccceEEEEEccCCCEEEEEc
Q 018858 82 VKSFDVHMPAS--WR-PLESYN---YNKEEINQIVCNPKSSFLACAD 122 (349)
Q Consensus 82 i~iwd~~~~~~--~~-~~~~~~---~~~~~v~~~~~~~~~~~l~~~~ 122 (349)
|..++...+.. .+ .+..+. ........++|.|++.+.++.+
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 88888764311 11 122222 1112346789999997666543
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.038 Score=49.32 Aligned_cols=122 Identities=10% Similarity=0.090 Sum_probs=73.7
Q ss_pred eEEEeCCCCcEEEEECCCCcEEEEeec-CCCCeEEEEEecCCCEEEEE-eCCCeEEEEEccCCCcccceeeccCcccceE
Q 018858 30 FVASSGEDGCICWFDLRSKDVQLVTDV-GNGPVTSLCFKSGNEDIIYV-SSGKEVKSFDVHMPASWRPLESYNYNKEEIN 107 (349)
Q Consensus 30 ~l~t~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~ 107 (349)
+|+.+ ....|+..+++.......+.. .-..+..++|++.+..|+.+ ..++.|..+++.... ...+. ........
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~-~~~v~--~~g~~~P~ 83 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSA-LEHVV--EFGLDYPE 83 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEE--CSSCSCCC
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCC-cEEEE--eCCCCCcc
Confidence 44433 346799999987654433332 23467899999977776655 456889999887432 22221 11123567
Q ss_pred EEEEccCCC-EEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEcc
Q 018858 108 QIVCNPKSS-FLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 108 ~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
.+++.+.+. +.++-...+.|.+.++........+. ..-.....+++.|
T Consensus 84 GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~-~~l~~P~~iavdp 132 (628)
T 4a0p_A 84 GMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVW-KDLDSPRALALDP 132 (628)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEEC-SSCCCEEEEEEET
T ss_pred eEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEe-CCCCCcccEEEcc
Confidence 888887654 44555567789999986443211222 2334467888887
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.038 Score=49.24 Aligned_cols=117 Identities=5% Similarity=-0.101 Sum_probs=75.4
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeC--CCeEEEEEccCCCcc
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS--GKEVKSFDVHMPASW 93 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~ 93 (349)
.....+++.+.++++.++-...+.|.+.+++.......+...-.....|++.|.+.+|+.... .+.|...++.. ...
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG-~~~ 162 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSR 162 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTS-CSC
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCC-Cce
Confidence 456789999864666777777889999998755433333334455678999997666665553 35677777653 222
Q ss_pred cceeeccCcccceEEEEEccCCCEEE-EEcCCCcEEEEEcCCc
Q 018858 94 RPLESYNYNKEEINQIVCNPKSSFLA-CADDGGDVKIIDIRQH 135 (349)
Q Consensus 94 ~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~ 135 (349)
..+.. ..-.....+++.++++.|. +-...+.|..+|+...
T Consensus 163 ~~l~~--~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~ 203 (619)
T 3s94_A 163 FIIIN--SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT 203 (619)
T ss_dssp EEEEC--SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCC
T ss_pred EEEEe--CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCC
Confidence 22211 1234578899998765554 4455677998888644
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.032 Score=47.90 Aligned_cols=115 Identities=15% Similarity=0.206 Sum_probs=66.7
Q ss_pred eEEEEEec-CCCEEEEEeC-CCeEEEEEccCCCcccceeeccCcccceEEEEE-------ccCCCEEEEEcCCC------
Q 018858 61 VTSLCFKS-GNEDIIYVSS-GKEVKSFDVHMPASWRPLESYNYNKEEINQIVC-------NPKSSFLACADDGG------ 125 (349)
Q Consensus 61 v~~~~~~~-~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~~l~~~~~dg------ 125 (349)
...|+|+| ++..|+.+.. .+.|++.|++.+........-.........++| ++++++|+++...+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~ 220 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES 220 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence 46889998 3555555544 467888898864322222211112235889999 99998666665543
Q ss_pred -cEEEEEcCC-ceEe-----ceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEE
Q 018858 126 -DVKIIDIRQ-HCLY-----KSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV 198 (349)
Q Consensus 126 -~i~i~d~~~-~~~~-----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 198 (349)
.|.+++... +... ..+. .-.....++++|+ ++.+++
T Consensus 221 ~~V~~i~r~~~G~~~~~~~~~~v~--~~~~p~giavdp~-----------------------------------~g~LYv 263 (496)
T 3kya_A 221 PSVYIIKRNADGTFDDRSDIQLIA--AYKQCNGATIHPI-----------------------------------NGELYF 263 (496)
T ss_dssp EEEEEEECCTTSCCSTTSCEEEEE--EESCCCCEEECTT-----------------------------------TCCEEE
T ss_pred ceEEEEecCCCCceeecccceeec--cCCCceEEEEcCC-----------------------------------CCeEEE
Confidence 266665333 2221 1111 1122345556652 456666
Q ss_pred EEcCCCeEEEEEcc
Q 018858 199 VAKGDGVVDVINIE 212 (349)
Q Consensus 199 ~~~~dg~i~i~d~~ 212 (349)
+-..++.|..+|+.
T Consensus 264 td~~~g~V~r~d~~ 277 (496)
T 3kya_A 264 NSYEKGQVFRLDLV 277 (496)
T ss_dssp EETTTTEEEEECHH
T ss_pred EECCCCEEEEEecc
Confidence 67788899999987
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.53 E-value=0.025 Score=47.03 Aligned_cols=111 Identities=13% Similarity=0.249 Sum_probs=67.7
Q ss_pred cCCCEEEEEeCCCeEEEEEccCCCcccceeecc-CcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceE---------
Q 018858 68 SGNEDIIYVSSGKEVKSFDVHMPASWRPLESYN-YNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL--------- 137 (349)
Q Consensus 68 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--------- 137 (349)
.++..++.+- ++.||.-++......+.+..-. ..-..+..+..+|+|.+||..+. ..|.|..+-.+..
T Consensus 30 ~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~ 107 (452)
T 3pbp_A 30 QNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQD 107 (452)
T ss_dssp TTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHH
T ss_pred cCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCccccccc
Confidence 3455554444 4667777776433333333311 01235778999999999998865 5788888863211
Q ss_pred ---eceeccc-----cccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEE
Q 018858 138 ---YKSLRAG-----HSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVI 209 (349)
Q Consensus 138 ---~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~ 209 (349)
.+.+..+ ...+|..+.|+| ... .+..|++-..|+.|++|
T Consensus 108 ~~q~~ty~l~~~~~~~~s~I~qVlWHP------------------------------l~~---~ds~LVVLtsD~~Ir~y 154 (452)
T 3pbp_A 108 AFQIFHYSIDEEEVGPKSSIKKVLFHP------------------------------KSY---RDSCIVVLKEDDTITMF 154 (452)
T ss_dssp TTEEEEEEGGGCC--CCCCEEEEEECT------------------------------TBG---GGCEEEEEETTSCEEEE
T ss_pred ccceeEEEcCCcccCCCCceeEEEecc------------------------------ccC---CCCeEEEEecCCEEEEE
Confidence 0111100 123455566665 322 67889999999999999
Q ss_pred EccC
Q 018858 210 NIES 213 (349)
Q Consensus 210 d~~~ 213 (349)
|+..
T Consensus 155 Dl~~ 158 (452)
T 3pbp_A 155 DILN 158 (452)
T ss_dssp ETTC
T ss_pred Eccc
Confidence 9986
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.52 E-value=0.071 Score=51.16 Aligned_cols=224 Identities=10% Similarity=0.030 Sum_probs=118.3
Q ss_pred cEEEEECCCCcEEEEeec-CCCCeEEEEE---ec-CCCEEEEEe----------CCCeEEEEEccCCCcccceeeccCcc
Q 018858 39 CICWFDLRSKDVQLVTDV-GNGPVTSLCF---KS-GNEDIIYVS----------SGKEVKSFDVHMPASWRPLESYNYNK 103 (349)
Q Consensus 39 ~i~vwd~~~~~~~~~~~~-~~~~v~~~~~---~~-~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~ 103 (349)
.|++.|..+.+.+..++- ..+.+.+++. .. ...++++|+ ..|.|.+|++..+ ..+.+.... .+
T Consensus 808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~-kL~lv~~~~-v~ 885 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDG-KLQTVAEKE-VK 885 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETT-EEEEEEEEE-ES
T ss_pred EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECC-EEEEEEEEE-cC
Confidence 466777776666555443 2344555543 22 246788876 2478999999743 233333222 25
Q ss_pred cceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEee
Q 018858 104 EEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIA 183 (349)
Q Consensus 104 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (349)
+.+++++-- +| +|++|- ...|++|++...+.++ ....+-..+..+....
T Consensus 886 g~v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~~L~-~~~~~~~~i~~~~l~~--------------------------- 934 (1158)
T 3ei3_A 886 GAVYSMVEF-NG-KLLASI-NSTVRLYEWTTEKELR-TECNHYNNIMALYLKT--------------------------- 934 (1158)
T ss_dssp SCEEEEEEE-TT-EEEEEE-TTEEEEEEECTTSCEE-EEEEECCCSCEEEEEE---------------------------
T ss_pred CcCEEEeee-CC-EEEEEc-CCEEEEEECCCCceEE-EEeeccccEEEEEEec---------------------------
Confidence 678877644 35 444443 3689999998654333 1100111122212211
Q ss_pred cCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCC
Q 018858 184 IPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGH 263 (349)
Q Consensus 184 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 263 (349)
.++++++|..-..|.++..+.. ... ...+.. .-+
T Consensus 935 ---------~~~~I~vgD~~~Sv~~~~y~~~----------------------~~~--------------L~~~a~-D~~ 968 (1158)
T 3ei3_A 935 ---------KGDFILVGDLMRSVLLLAYKPM----------------------EGN--------------FEEIAR-DFN 968 (1158)
T ss_dssp ---------ETTEEEEEESSBCEEEEEEETT----------------------TTE--------------EEEEEE-CCS
T ss_pred ---------cCCEEEEEEhhheEEEEEEEcC----------------------CCe--------------EEEEEe-ecc
Confidence 3677888887666766654421 000 111111 123
Q ss_pred CcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecccc-ccceEEEEe---ecCC--------C
Q 018858 264 TAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL-NKKVNWLCT---TPTE--------S 331 (349)
Q Consensus 264 ~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~---~~~~--------~ 331 (349)
...++++.+- .+ ..++.+..+|.+.+......... .....++.....-| ...|+++.- .+.. .
T Consensus 969 ~~~vta~~~l---d~-~t~l~aD~~gNl~vl~~~~~~~~-~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~ 1043 (1158)
T 3ei3_A 969 PNWMSAVEIL---DD-DNFLGAENAFNLFVCQKDSAATT-DEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQ 1043 (1158)
T ss_dssp CBCEEEEEEE---ET-TEEEEEETTSEEEEEEECTTCCS-TTGGGBEEEEEEEECSSCEEEEEECCSCCC-------CEE
T ss_pred cccEEEEEEE---cc-CcEEEEcCCCcEEEEecCCCCCC-ccccceeeeEEEEeCCCcEeeEEeeeeecCCCcccccccc
Confidence 4578888886 34 57777889999999987663211 11111232222222 345666542 2211 2
Q ss_pred CcEEEeeCCCeEEEe
Q 018858 332 ENLVVCDTSKVVKVY 346 (349)
Q Consensus 332 ~~l~~~~~dg~i~iw 346 (349)
..++-++.+|.|-+.
T Consensus 1044 ~~il~~T~~GsIg~l 1058 (1158)
T 3ei3_A 1044 GSVLFGTVNGMIGLV 1058 (1158)
T ss_dssp EEEEEEETTSCEEEE
T ss_pred ceEEEEecCCEEEEE
Confidence 247777888888653
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.027 Score=45.23 Aligned_cols=104 Identities=7% Similarity=0.055 Sum_probs=56.3
Q ss_pred CceEEEeCCC----CcEEEEECCCCcEEEE--eecCCCCeEEEEEecCCCEEEEEeCC------CeEEEEEccCCCcccc
Q 018858 28 PGFVASSGED----GCICWFDLRSKDVQLV--TDVGNGPVTSLCFKSGNEDIIYVSSG------KEVKSFDVHMPASWRP 95 (349)
Q Consensus 28 ~~~l~t~~~d----g~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~ 95 (349)
+.+++.|+.+ ..+.+||..+.+-... +.........+.+ +++.++.|+.+ ..+.+||..+.+ ...
T Consensus 56 ~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~-W~~ 132 (306)
T 3ii7_A 56 NVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTES-WHT 132 (306)
T ss_dssp TEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTE-EEE
T ss_pred CEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCc-eEe
Confidence 5677777754 5688899887654322 2211112222222 56667777654 468899988653 233
Q ss_pred eeeccCcccceEEEEEccCCCEEEEEcC---------CCcEEEEEcCCce
Q 018858 96 LESYNYNKEEINQIVCNPKSSFLACADD---------GGDVKIIDIRQHC 136 (349)
Q Consensus 96 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~ 136 (349)
+..++........+.+ +++.++.|+. ...+.+||+.+.+
T Consensus 133 ~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~ 180 (306)
T 3ii7_A 133 KPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATET 180 (306)
T ss_dssp ECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTE
T ss_pred CCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCe
Confidence 3222221122222222 5666676653 3458888887653
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.48 E-value=0.034 Score=46.36 Aligned_cols=207 Identities=11% Similarity=0.166 Sum_probs=121.7
Q ss_pred EEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccC
Q 018858 22 IASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNY 101 (349)
Q Consensus 22 ~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 101 (349)
-.+|. .+.+|.-. ..++.|+|+++.+.+....- ..+|.--.|-.+ +.|+..+ +..|+-|+++... .+.+.+..
T Consensus 72 IMnP~-~~iiALra-g~~lQiFnle~K~klks~~~-~e~VvfWkWis~-~~l~lVT-~taVyHWsi~~~s--~P~kvFdR 144 (494)
T 1bpo_A 72 IMNPA-SKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISL-NTVALVT-DNAVYHWSMEGES--QPVKMFDR 144 (494)
T ss_dssp EECSS-SSCEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEEEET-TEEEEEC-SSEEEEEESSSSC--CCEEEEEC
T ss_pred eeCCC-CcEEEEec-CCeEEEEchHHhhhhcceec-CCCceEEEecCC-CeEEEEc-CCeeEEecccCCC--Cchhheec
Confidence 45676 56676654 57899999999988888774 456777777643 4565555 6679999997532 23232222
Q ss_pred c----ccceEEEEEccCCCEEEEEc-------CCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCC
Q 018858 102 N----KEEINQIVCNPKSSFLACAD-------DGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNA 170 (349)
Q Consensus 102 ~----~~~v~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 170 (349)
| ...|.....+++.++++..+ -.|.+.+|..+.+ .-+.+. +|......+.+..+
T Consensus 145 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ie-Ghaa~F~~~~~~g~------------- 209 (494)
T 1bpo_A 145 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIE-GHAASFAQFKMEGN------------- 209 (494)
T ss_dssp CGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEEC-CSEEEEEEEECTTC-------------
T ss_pred chhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchhe-eeeeeeEEEecCCC-------------
Confidence 2 24566677788888876433 2467888987654 334555 67655444443321
Q ss_pred ccccCCceeEEeecCcccccCCCCcEEEEEcC---CCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeee
Q 018858 171 GQCYNPAFVHAIAIPDADMLDKTNKICVVAKG---DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD 247 (349)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (349)
......++.+.. .+.+++.++....... .+ |.
T Consensus 210 --------------------~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~---~~---------f~------------- 244 (494)
T 1bpo_A 210 --------------------AEESTLFCFAVRGQAGGKLHIIEVGTPPTGN---QP---------FP------------- 244 (494)
T ss_dssp --------------------SSEEEEEEEEECSTTCCEEEEEECSCCCTTC---CC---------CC-------------
T ss_pred --------------------CCCceEEEEEEecCCCcEEEEEEcCCCccCC---CC---------cc-------------
Confidence 001234444443 2788888885420000 00 00
Q ss_pred ecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcc
Q 018858 248 QSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG 301 (349)
Q Consensus 248 ~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 301 (349)
.........-..-..-..++..+ +.-..+..-..-|.|++||++++..
T Consensus 245 ---kk~vdv~fppe~~~DFPvamqvs---~kygviyviTK~G~i~lyDleTgt~ 292 (494)
T 1bpo_A 245 ---KKAVDVFFPPEAQNDFPVAMQIS---EKHDVVFLITKYGYIHLYDLETGTC 292 (494)
T ss_dssp ---CEEEECCCCTTSTTCCEEEEEEE---TTTTEEEEEETTSEEEEEETTTCCE
T ss_pred ---ceeeeeeCCcccccCceeEEEec---ccCCEEEEEecCceEEEEeccccee
Confidence 00001111111223344578888 7777888888899999999999953
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.38 E-value=0.11 Score=49.95 Aligned_cols=74 Identities=11% Similarity=0.025 Sum_probs=50.6
Q ss_pred ceeeeEEEEecCC-----CceEEEeCC-CCcEEEEECCCCcEEEEeecC-CCCeEEEEEe--cCCCEEEEEeCCCeEEEE
Q 018858 15 KATATCCIASRDR-----PGFVASSGE-DGCICWFDLRSKDVQLVTDVG-NGPVTSLCFK--SGNEDIIYVSSGKEVKSF 85 (349)
Q Consensus 15 ~~~i~~~~~~~~~-----~~~l~t~~~-dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~--~~~~~l~~~~~dg~i~iw 85 (349)
.+.|.|+++.|.+ +++++.|.. |++++|+++.+.+.+....-. .....++.+. ....+|..|-.||.+.-+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 4579999998642 368898886 999999999987765433221 2234444443 234578888899988766
Q ss_pred Ecc
Q 018858 86 DVH 88 (349)
Q Consensus 86 d~~ 88 (349)
.+.
T Consensus 633 ~~d 635 (1158)
T 3ei3_A 633 GLN 635 (1158)
T ss_dssp EEC
T ss_pred EEc
Confidence 654
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.049 Score=43.75 Aligned_cols=104 Identities=9% Similarity=0.057 Sum_probs=54.9
Q ss_pred CceEEEeCC----C-----CcEEEEECCCCcEEEE--eecCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEEccCCC
Q 018858 28 PGFVASSGE----D-----GCICWFDLRSKDVQLV--TDVGNGPVTSLCFKSGNEDIIYVSSG-----KEVKSFDVHMPA 91 (349)
Q Consensus 28 ~~~l~t~~~----d-----g~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~ 91 (349)
+.+++.|+. + ..+.+||..+.+-... +.........+.+ +++.++.|+.+ ..+.+||..+.+
T Consensus 71 ~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 148 (308)
T 1zgk_A 71 GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDE 148 (308)
T ss_dssp TEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTE
T ss_pred CEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCe
Confidence 567777775 2 3588889877653221 1111112222222 56666666643 468889987643
Q ss_pred cccceeeccCcccceEEEEEccCCCEEEEEcCC-----CcEEEEEcCCce
Q 018858 92 SWRPLESYNYNKEEINQIVCNPKSSFLACADDG-----GDVKIIDIRQHC 136 (349)
Q Consensus 92 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~ 136 (349)
...+..++........+.+ +++.++.|+.+ ..+.+||+.+.+
T Consensus 149 -W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 195 (308)
T 1zgk_A 149 -WHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNE 195 (308)
T ss_dssp -EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred -EeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCe
Confidence 2222222221122222222 56677777654 358888887654
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.065 Score=43.92 Aligned_cols=104 Identities=20% Similarity=0.141 Sum_probs=60.5
Q ss_pred eeEEEEecCCCceEEEeC------------CCCcEEEEECCC--CcEE-EEeec-----CCCCeEEEEEec--CCC-EEE
Q 018858 18 ATCCIASRDRPGFVASSG------------EDGCICWFDLRS--KDVQ-LVTDV-----GNGPVTSLCFKS--GNE-DII 74 (349)
Q Consensus 18 i~~~~~~~~~~~~l~t~~------------~dg~i~vwd~~~--~~~~-~~~~~-----~~~~v~~~~~~~--~~~-~l~ 74 (349)
.-.+...|+ +..+++++ .+|.|.++|..+ ++.. ..+.+ .......+.+.+ ++. +|+
T Consensus 52 ~EDi~~~~~-G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 52 SEDLEILPN-GLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCEEEECTT-SEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred cceeEEcCC-CeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 345566776 65555542 689999999874 3321 12222 224677788766 344 455
Q ss_pred EEeC---CCeEEEEEccCCC-cccceeeccCc-ccceEEEEEccCCCEEEEEc
Q 018858 75 YVSS---GKEVKSFDVHMPA-SWRPLESYNYN-KEEINQIVCNPKSSFLACAD 122 (349)
Q Consensus 75 ~~~~---dg~i~iwd~~~~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~ 122 (349)
++.. +.+|.+|++.... ....+..+.+. -...+.+.+.++|.+.++..
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~ 183 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATND 183 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEES
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCC
Confidence 5532 4678888877532 22333333321 23578899999998777654
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.011 Score=48.08 Aligned_cols=114 Identities=10% Similarity=0.106 Sum_probs=71.1
Q ss_pred ceEEEeCCCCcEEEEECCCCcEEEEeecC-CCCeEEEEEe--cCCCEEEEE--eCCCeEEEEEccCCCcccceeeccC-c
Q 018858 29 GFVASSGEDGCICWFDLRSKDVQLVTDVG-NGPVTSLCFK--SGNEDIIYV--SSGKEVKSFDVHMPASWRPLESYNY-N 102 (349)
Q Consensus 29 ~~l~t~~~dg~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~--~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~-~ 102 (349)
.+++.++.||.|.-.|.++|+.++.++.. ..++....-. +.+..++.+ +.||.|..++.+++.....+..-.. .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 57888999999999999999999988754 1233321110 112234433 5799999999877632221111000 0
Q ss_pred ccceEE---EEE-c----cCCCEEEEEcCCCcEEEEEcCCceEeceec
Q 018858 103 KEEINQ---IVC-N----PKSSFLACADDGGDVKIIDIRQHCLYKSLR 142 (349)
Q Consensus 103 ~~~v~~---~~~-~----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 142 (349)
..++.. ... . ..+..+++|+.+|.+...|+++|+.+.++.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~ 138 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFG 138 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEES
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence 011111 000 0 135678899999999999999999998887
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.071 Score=43.04 Aligned_cols=103 Identities=10% Similarity=-0.032 Sum_probs=52.3
Q ss_pred ceEEEeCCCCcEEEEECCCCcEEE-EeecCCCCeEEEEEecCCCEEEEEeC----CC-------eEEEEEccCCCcccce
Q 018858 29 GFVASSGEDGCICWFDLRSKDVQL-VTDVGNGPVTSLCFKSGNEDIIYVSS----GK-------EVKSFDVHMPASWRPL 96 (349)
Q Consensus 29 ~~l~t~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~----dg-------~i~iwd~~~~~~~~~~ 96 (349)
.+++.|+. .+..||..+.+-.. .+..............++..++.|+. ++ .+.+||..+.+ ...+
T Consensus 17 ~i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~-W~~~ 93 (318)
T 2woz_A 17 LILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSE-WVGL 93 (318)
T ss_dssp EEEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTE-EEEC
T ss_pred hhhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCc-EEEC
Confidence 34555554 38899998776533 12211122222233456777777773 11 27788877643 2333
Q ss_pred eeccCcccceEEEEEccCCCEEEEEcCC-------CcEEEEEcCCce
Q 018858 97 ESYNYNKEEINQIVCNPKSSFLACADDG-------GDVKIIDIRQHC 136 (349)
Q Consensus 97 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~~ 136 (349)
...+..........+ +++.++.|+.+ ..+.+||..+.+
T Consensus 94 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~ 138 (318)
T 2woz_A 94 PPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAK 138 (318)
T ss_dssp SCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTE
T ss_pred CCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCC
Confidence 222221122222222 56677777653 247788877654
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.085 Score=42.51 Aligned_cols=104 Identities=11% Similarity=0.029 Sum_probs=52.8
Q ss_pred CceEEEeCC-----C------CcEEEEECCCCcEEEEeecCCCCe--EEEEEecCCCEEEEEeCC--------CeEEEEE
Q 018858 28 PGFVASSGE-----D------GCICWFDLRSKDVQLVTDVGNGPV--TSLCFKSGNEDIIYVSSG--------KEVKSFD 86 (349)
Q Consensus 28 ~~~l~t~~~-----d------g~i~vwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~d--------g~i~iwd 86 (349)
+.+++.|+. . ..+.+||..+.+-.. +..-..+- .+++.. +++.++.|+.+ ..+.+||
T Consensus 46 ~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d 123 (315)
T 4asc_A 46 NQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG-MPPLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYD 123 (315)
T ss_dssp CCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE-CCCBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEE
T ss_pred CEEEEEcCcccCCCCCccccccceEEecCCCCeEEE-CCCCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEEC
Confidence 677777763 1 127788887765422 11111111 112222 55666666632 4688999
Q ss_pred ccCCCcccceeeccCcccceEEEEEccCCCEEEEEcC-C-----CcEEEEEcCCce
Q 018858 87 VHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-G-----GDVKIIDIRQHC 136 (349)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-----g~i~i~d~~~~~ 136 (349)
..+.+ ...+..++........+. -+++.++.|+. + ..+.+||..+.+
T Consensus 124 ~~~~~-W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 176 (315)
T 4asc_A 124 RLSFK-WGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKFE 176 (315)
T ss_dssp TTTTE-EEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTTE
T ss_pred CCCCc-EeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCCe
Confidence 88653 333333222112222222 35667777775 2 358888887653
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.11 Score=42.37 Aligned_cols=114 Identities=10% Similarity=0.068 Sum_probs=66.7
Q ss_pred eeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEE--EEe----ecCCCCeEEEEEecC---CCEEEEE---
Q 018858 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQ--LVT----DVGNGPVTSLCFKSG---NEDIIYV--- 76 (349)
Q Consensus 9 ~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~--~~~----~~~~~~v~~~~~~~~---~~~l~~~--- 76 (349)
..+-..-..-+.++|.|+ +.++++--..|.|++++...++.. ..+ .........|+++|+ +..|...
T Consensus 25 ~~va~gL~~P~~ia~~pd-G~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~ 103 (347)
T 3das_A 25 RTVATGLNSPWGLAPLPG-GDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTS 103 (347)
T ss_dssp EEEECCCSSEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEEC
T ss_pred EEeecCCCCceEEEEcCC-CcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEec
Confidence 334333445678999998 788777766899999987655542 222 123456889999995 3444432
Q ss_pred eCCCeEEEEEccCCC----c---cc-ceeeccC-cccceEEEEEccCCCEEEEEcC
Q 018858 77 SSGKEVKSFDVHMPA----S---WR-PLESYNY-NKEEINQIVCNPKSSFLACADD 123 (349)
Q Consensus 77 ~~dg~i~iwd~~~~~----~---~~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~ 123 (349)
..++.|.-|.+..+. . .+ .+..+.. .......|+|.|++.+.++.+.
T Consensus 104 ~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd 159 (347)
T 3das_A 104 ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGE 159 (347)
T ss_dssp SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBC
T ss_pred CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECC
Confidence 234566666665421 1 11 1122221 1123456899999977666543
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.13 Score=42.32 Aligned_cols=104 Identities=11% Similarity=0.102 Sum_probs=60.4
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc-EEEEee---cCCCCeEEEEEecC---CCEEEEEeC----C----C
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKD-VQLVTD---VGNGPVTSLCFKSG---NEDIIYVSS----G----K 80 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~-~~~~~~---~~~~~v~~~~~~~~---~~~l~~~~~----d----g 80 (349)
..-..++|.|+ ++++++ ..+|.|++++ .+++ .+..+. ........|+++|+ +..|.++.. + .
T Consensus 29 ~~P~~ia~~pd-G~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 29 EVPWSIAPLGG-GRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp SCEEEEEEEET-TEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCeEEEEcCC-CeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 44678999998 775555 5559999997 3454 222221 12356889999997 455554432 2 5
Q ss_pred eEEEEEccCCC--c--ccc-eeeccC-cccceEEEEEccCCCEEEEEc
Q 018858 81 EVKSFDVHMPA--S--WRP-LESYNY-NKEEINQIVCNPKSSFLACAD 122 (349)
Q Consensus 81 ~i~iwd~~~~~--~--~~~-~~~~~~-~~~~v~~~~~~~~~~~l~~~~ 122 (349)
.|..|+..... . .+. +..+.. .......++|.|++.+.++.+
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG 153 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence 67777765431 0 111 121221 112346799999998666643
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.16 Score=41.75 Aligned_cols=62 Identities=16% Similarity=0.226 Sum_probs=37.5
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeec----cCcccceEEEEEccC---CCEEEEE
Q 018858 59 GPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESY----NYNKEEINQIVCNPK---SSFLACA 121 (349)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~~v~~~~~~~~---~~~l~~~ 121 (349)
.....|+|.|+|+.|+++...|.|++++.. +.....+..+ .........++++|+ +..|...
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~ 86 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLS 86 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEE
Confidence 356789999999845555668999999853 2211111111 112345789999996 4444433
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.17 Score=41.60 Aligned_cols=103 Identities=11% Similarity=0.091 Sum_probs=56.9
Q ss_pred eeeEEEEecCCCc-eEEEeCCCCcEEEEECCCCcEEEE---e----ecCCCCeEEEEEecC---CCEEEEEe-C------
Q 018858 17 TATCCIASRDRPG-FVASSGEDGCICWFDLRSKDVQLV---T----DVGNGPVTSLCFKSG---NEDIIYVS-S------ 78 (349)
Q Consensus 17 ~i~~~~~~~~~~~-~l~t~~~dg~i~vwd~~~~~~~~~---~----~~~~~~v~~~~~~~~---~~~l~~~~-~------ 78 (349)
.-..++|.|+ ++ ++++ ...|.|++++.. ++.... + .........++++|+ +..|..+. .
T Consensus 19 ~P~~i~~~pd-G~~l~V~-e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 19 HPWALAFLPD-NHGMLIT-LRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp SEEEEEECST-TCCEEEE-ETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred CcEEEEEcCC-CCEEEEE-eCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 4578999998 77 5554 457899999853 332111 1 112346789999995 44554442 2
Q ss_pred -CCeEEEEEccCCC----cccc-eeeccC---cccceEEEEEccCCCEEEEEc
Q 018858 79 -GKEVKSFDVHMPA----SWRP-LESYNY---NKEEINQIVCNPKSSFLACAD 122 (349)
Q Consensus 79 -dg~i~iwd~~~~~----~~~~-~~~~~~---~~~~v~~~~~~~~~~~l~~~~ 122 (349)
...|..+++.... ..+. +..+.. .......++|.|++.+.++-+
T Consensus 96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 148 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALG 148 (353)
T ss_dssp EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEEC
T ss_pred ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEEC
Confidence 2356666665321 1111 112221 112245799999996655543
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=96.77 E-value=0.19 Score=42.04 Aligned_cols=224 Identities=10% Similarity=0.115 Sum_probs=121.7
Q ss_pred CCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCC
Q 018858 36 EDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS 115 (349)
Q Consensus 36 ~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 115 (349)
.+..+.|-|+.++..+..-+- ..-+.-.+|..+.||.-. ...++|+|+++.+ .++.+.-. ..|..=.|-.+
T Consensus 46 ~~~~vvIiDl~~~~~~~rrpi---~AdsAIMnP~~~iiALra-g~~lQiFnle~K~---klks~~~~-e~VvfWkWis~- 116 (494)
T 1bpo_A 46 EQAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKS---KMKAHTMT-DDVTFWKWISL- 116 (494)
T ss_dssp TCCEEEEEETTSTTSCEEEEC---CCSEEEECSSSSCEEEEE-TTEEEEEETTTTE---EEEEEECS-SCCCEEEEEET-
T ss_pred CCCeEEEEECCCCCcceeccc---ccceeeeCCCCcEEEEec-CCeEEEEchHHhh---hhcceecC-CCceEEEecCC-
Confidence 344788888887654322111 112344678888777665 7899999999753 33333322 45655566533
Q ss_pred CEEEEEcCCCcEEEEEcCC-ceEeceecccc----ccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCccccc
Q 018858 116 SFLACADDGGDVKIIDIRQ-HCLYKSLRAGH----SSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADML 190 (349)
Q Consensus 116 ~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (349)
+.|+..+. ..|+-|++.. ..+.+.+. .| ...|.....+++
T Consensus 117 ~~l~lVT~-taVyHWsi~~~s~P~kvFd-R~~~L~~~QIInY~~d~~--------------------------------- 161 (494)
T 1bpo_A 117 NTVALVTD-NAVYHWSMEGESQPVKMFD-RHSSLAGCQIINYRTDAK--------------------------------- 161 (494)
T ss_dssp TEEEEECS-SEEEEEESSSSCCCEEEEE-CCGGGTTCEEEEEEECTT---------------------------------
T ss_pred CeEEEEcC-CeeEEecccCCCCchhhee-cchhcccceEEEEEECCC---------------------------------
Confidence 35555544 4799999974 33444444 33 234555555553
Q ss_pred CCCCcEEEEEc-------CCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCC
Q 018858 191 DKTNKICVVAK-------GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGH 263 (349)
Q Consensus 191 ~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 263 (349)
.+.++..+ -.|.+.+|..+.+ ....+.+|
T Consensus 162 ---~kW~~l~GI~~~~~~v~G~mQLYS~er~-----------------------------------------~sQ~ieGh 197 (494)
T 1bpo_A 162 ---QKWLLLTGISAQQNRVVGAMQLYSVDRK-----------------------------------------VSQPIEGH 197 (494)
T ss_dssp ---SSEEEEEEEEEETTEEEEEEEEEESTTC-----------------------------------------CEEEECCS
T ss_pred ---CCeEEEEeecccCCcccceEEEeecccc-----------------------------------------ccchheee
Confidence 44433222 1367788888752 33445556
Q ss_pred CcceEEEEEeeecCCccEEEEeeC---CCeEEEEecCCCc-ceecccccceeeec---cccccceEEEEeecCCCCcEEE
Q 018858 264 TAAASCVAFSMFGERGKYLISGGN---DKLVKVWDCSRFQ-GVQTSINNDLLIKN---INLNKKVNWLCTTPTESENLVV 336 (349)
Q Consensus 264 ~~~i~~i~~~~~~~~~~~l~s~~~---d~~i~vwd~~~~~-~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~ 336 (349)
.+....+.+.-.......++.+.. .++++|-++.... .... -..+....+ ....+-..++..++..| .++.
T Consensus 198 aa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~-f~kk~vdv~fppe~~~DFPvamqvs~kyg-viyv 275 (494)
T 1bpo_A 198 AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQP-FPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFL 275 (494)
T ss_dssp EEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCC-CCCEEEECCCCTTSTTCCEEEEEEETTTT-EEEE
T ss_pred eeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCC-ccceeeeeeCCcccccCceeEEEecccCC-EEEE
Confidence 554433332100000123333322 2789999986531 1100 000111111 22355677788877544 7888
Q ss_pred eeCCCeEEEeeCC
Q 018858 337 CDTSKVVKVYSIS 349 (349)
Q Consensus 337 ~~~dg~i~iw~~~ 349 (349)
.+.-|.|+++|++
T Consensus 276 iTK~G~i~lyDle 288 (494)
T 1bpo_A 276 ITKYGYIHLYDLE 288 (494)
T ss_dssp EETTSEEEEEETT
T ss_pred EecCceEEEEecc
Confidence 8999999999974
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.28 Score=47.59 Aligned_cols=121 Identities=12% Similarity=0.215 Sum_probs=73.2
Q ss_pred EecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCc
Q 018858 23 ASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYN 102 (349)
Q Consensus 23 ~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 102 (349)
.+|. .+.+|.-. ..++.|+|+++...+..+.- ..+|.--.|-.. +.|+..+ +..|.-|++.... .+.+.+..|
T Consensus 73 MnP~-~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~-~~l~lVT-~~aVyHW~~~~~s--~P~k~fdR~ 145 (1630)
T 1xi4_A 73 MNPA-SKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISL-NTVALVT-DNAVYHWSMEGES--QPVKMFDRH 145 (1630)
T ss_pred cCCC-cceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCC-CeeEEEc-CCeEEEeccCCCC--ccHHHHhcc
Confidence 4555 55566544 57899999998877766663 456777777643 3455555 5679999996422 222222222
Q ss_pred ----ccceEEEEEccCCCEEEEEc-------CCCcEEEEEcCCceEeceeccccccceeEE
Q 018858 103 ----KEEINQIVCNPKSSFLACAD-------DGGDVKIIDIRQHCLYKSLRAGHSSICSSV 152 (349)
Q Consensus 103 ----~~~v~~~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 152 (349)
...|.....+++.++++..+ -.|.+.+|..+.+ ..+.+. +|......+
T Consensus 146 ~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~ie-gha~~F~~~ 204 (1630)
T 1xi4_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIE-GHAASFAQF 204 (1630)
T ss_pred hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhh-HhHhhhhee
Confidence 24566667788888876432 3477888887643 234444 665444333
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.21 Score=40.22 Aligned_cols=104 Identities=11% Similarity=0.053 Sum_probs=52.3
Q ss_pred CceEEEeCC----CC-------cEEEEECCCCcEEEE--eecCCCCeEEEEEecCCCEEEEEeCC-------CeEEEEEc
Q 018858 28 PGFVASSGE----DG-------CICWFDLRSKDVQLV--TDVGNGPVTSLCFKSGNEDIIYVSSG-------KEVKSFDV 87 (349)
Q Consensus 28 ~~~l~t~~~----dg-------~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-------g~i~iwd~ 87 (349)
+.+++.|+. ++ .+.+||..+.+-... +....... +++.. +++.++.|+.+ ..+.+||.
T Consensus 57 ~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~ 134 (318)
T 2woz_A 57 NQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF-GLGEV-DDKIYVVAGKDLQTEASLDSVLCYDP 134 (318)
T ss_dssp SCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC-EEEEE-TTEEEEEEEEBTTTCCEEEEEEEEET
T ss_pred CEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc-ceEEE-CCEEEEEcCccCCCCcccceEEEEeC
Confidence 677777773 12 167788876654322 11111111 22222 56666777653 35788888
Q ss_pred cCCCcccceeeccCcccceEEEEEccCCCEEEEEcC------CCcEEEEEcCCce
Q 018858 88 HMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD------GGDVKIIDIRQHC 136 (349)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~ 136 (349)
.+.+ ...+..++........+. .+++.++.|+. ...+.+||+.+.+
T Consensus 135 ~~~~-W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 186 (318)
T 2woz_A 135 VAAK-WSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD 186 (318)
T ss_dssp TTTE-EEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTE
T ss_pred CCCC-EeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCE
Confidence 7643 232222221111112222 35667777764 2358889987654
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.24 Score=40.67 Aligned_cols=92 Identities=10% Similarity=0.080 Sum_probs=45.5
Q ss_pred CceEEEeCCC-CcEEEEECCC--CcEEEEeec-C--CCCeEEEEEecCCCEEEEEeC-C---------CeEEEEEccCCC
Q 018858 28 PGFVASSGED-GCICWFDLRS--KDVQLVTDV-G--NGPVTSLCFKSGNEDIIYVSS-G---------KEVKSFDVHMPA 91 (349)
Q Consensus 28 ~~~l~t~~~d-g~i~vwd~~~--~~~~~~~~~-~--~~~v~~~~~~~~~~~l~~~~~-d---------g~i~iwd~~~~~ 91 (349)
+.+++.|+.+ ..+.+||..+ .+-. .+.. . ...-.+++.. +++.++.|+. + ..+.+||..+.+
T Consensus 20 ~~iyv~GG~~~~~~~~~d~~~~~~~W~-~~~~~p~~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~ 97 (357)
T 2uvk_A 20 DTVYIGLGSAGTAWYKLDTQAKDKKWT-ALAAFPGGPRDQATSAFI-DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS 97 (357)
T ss_dssp TEEEEECGGGTTCEEEEETTSSSCCEE-ECCCCTTCCCBSCEEEEE-TTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred CEEEEEeCcCCCeEEEEccccCCCCee-ECCCCCCCcCccceEEEE-CCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence 5676766643 5688899864 3322 2211 1 1111122222 5666666665 2 468899988643
Q ss_pred cccceeecc-CcccceEEEEEccCCCEEEEEcCC
Q 018858 92 SWRPLESYN-YNKEEINQIVCNPKSSFLACADDG 124 (349)
Q Consensus 92 ~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d 124 (349)
...+.... .......++. .+++.++.|+.+
T Consensus 98 -W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~ 128 (357)
T 2uvk_A 98 -WVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVN 128 (357)
T ss_dssp -EEECSCCCSSCCSSEEEEE--ETTEEEEEECCC
T ss_pred -EEECCCCCCcccccceEEE--ECCEEEEEeCcC
Confidence 22222222 1111222222 466777888754
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.55 Score=42.58 Aligned_cols=107 Identities=9% Similarity=0.135 Sum_probs=59.6
Q ss_pred CceEEEeCCC----CcEEEEECCCCcEEEEe-e------cCCCCeEEEEEec-CCCEEEEEeCC------CeEEEEEccC
Q 018858 28 PGFVASSGED----GCICWFDLRSKDVQLVT-D------VGNGPVTSLCFKS-GNEDIIYVSSG------KEVKSFDVHM 89 (349)
Q Consensus 28 ~~~l~t~~~d----g~i~vwd~~~~~~~~~~-~------~~~~~v~~~~~~~-~~~~l~~~~~d------g~i~iwd~~~ 89 (349)
+.+++.||.+ ..+.+||..+.+....- . .....-.+++..+ +++.++.|+.+ ..+.+||..+
T Consensus 398 ~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t 477 (695)
T 2zwa_A 398 NDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKT 477 (695)
T ss_dssp SCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTT
T ss_pred CEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCC
Confidence 5677777753 45888898876643222 1 1111122333333 67777777743 3588889876
Q ss_pred CCcccceeeccCcccceEEEEEccCCCEEEEEcCCC--cEEEEEcCCce
Q 018858 90 PASWRPLESYNYNKEEINQIVCNPKSSFLACADDGG--DVKIIDIRQHC 136 (349)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~ 136 (349)
.+ ...+...+.....- +.+...+++.++.|+.++ .+.+||..+.+
T Consensus 478 ~~-W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~ 524 (695)
T 2zwa_A 478 RE-WSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEI 524 (695)
T ss_dssp TE-EEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTE
T ss_pred Cc-EEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCc
Confidence 42 23332222111122 223323678888887654 68999988654
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.34 Score=39.69 Aligned_cols=63 Identities=17% Similarity=0.228 Sum_probs=37.1
Q ss_pred ceEEEEEeeecCCccEEEEee-CCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEee
Q 018858 266 AASCVAFSMFGERGKYLISGG-NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD 338 (349)
Q Consensus 266 ~i~~i~~~~~~~~~~~l~s~~-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 338 (349)
..+.++|+ ||+++|+.+. ..+.|+.|++....... ....+ ...+..-.+++.+.+|++.+++.
T Consensus 222 ~pNGia~s---pDg~~lYvadt~~~~I~~~~~~~~g~l~------~~~~~-~~~g~PDGi~vD~e~G~lwva~~ 285 (355)
T 3sre_A 222 FANGINIS---PDGKYVYIAELLAHKIHVYEKHANWTLT------PLRVL-SFDTLVDNISVDPVTGDLWVGCH 285 (355)
T ss_dssp SEEEEEEC---TTSSEEEEEEGGGTEEEEEEECTTSCEE------EEEEE-ECSSEEEEEEECTTTCCEEEEEE
T ss_pred ccCcceEC---CCCCEEEEEeCCCCeEEEEEECCCCcEe------cCEEE-eCCCCCceEEEeCCCCcEEEEec
Confidence 46889999 8987776554 56889999986421111 01111 22345666777552366555454
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.21 E-value=0.5 Score=45.92 Aligned_cols=113 Identities=12% Similarity=0.146 Sum_probs=62.3
Q ss_pred CCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCC
Q 018858 37 DGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSS 116 (349)
Q Consensus 37 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 116 (349)
...+.|-|+.++..+..-+ -..-+.-.+|..+.||.-. ...++|+|+++... ++.+.- ...|..=.|-.. +
T Consensus 47 ~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~k---lks~~~-~e~VvfWkWis~-~ 117 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSK---MKAHTM-TDDVTFWKWISL-N 117 (1630)
T ss_pred CceEEEEECCCCCCccccc---ccchhhccCCCcceEEEec-CCeEEEeehHHhhh---hccccc-CCCceEEEecCC-C
Confidence 3478888887765431111 1112334678777666654 77899999987533 333322 245555566433 3
Q ss_pred EEEEEcCCCcEEEEEcCC-ceEeceecccc----ccceeEEEEccCCCC
Q 018858 117 FLACADDGGDVKIIDIRQ-HCLYKSLRAGH----SSICSSVQFIPWKPW 160 (349)
Q Consensus 117 ~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~----~~~v~~~~~~~~~~~ 160 (349)
.|+..+. ..|+.|++.. ..+.+.+. .| ...|..-..+++..|
T Consensus 118 ~l~lVT~-~aVyHW~~~~~s~P~k~fd-R~~~L~~~QIinY~~d~~~kW 164 (1630)
T 1xi4_A 118 TVALVTD-NAVYHWSMEGESQPVKMFD-RHSSLAGCQIINYRTDAKQKW 164 (1630)
T ss_pred eeEEEcC-CeEEEeccCCCCccHHHHh-cchhcccCeeEEeeeCCCCCe
Confidence 4544443 4799999974 33444444 33 334555555664333
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=96.16 E-value=0.53 Score=40.18 Aligned_cols=107 Identities=12% Similarity=0.152 Sum_probs=62.1
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEE--EEeec------CCCCeEEEEEecC---CCEEEEEeC------
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQ--LVTDV------GNGPVTSLCFKSG---NEDIIYVSS------ 78 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~--~~~~~------~~~~v~~~~~~~~---~~~l~~~~~------ 78 (349)
..-+.++|.|+ ++++++-...+.|++++..+++.. ..+.. ....+..|+|+|+ +..|..+..
T Consensus 27 ~~P~~~a~~pd-G~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 27 NKPHALLWGPD-NQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SSEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCceEEEEcCC-CcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 34568999998 787777554457888886655542 22221 2456789999995 555544432
Q ss_pred -------CCeEEEEEccCCC----ccc-ceeeccC-cccceEEEEEccCCCEEEEEcC
Q 018858 79 -------GKEVKSFDVHMPA----SWR-PLESYNY-NKEEINQIVCNPKSSFLACADD 123 (349)
Q Consensus 79 -------dg~i~iwd~~~~~----~~~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~ 123 (349)
...|.-+++.... ..+ .+..+.. .......|+|.|+|.+.++.+.
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 2356666654321 111 1222221 1234688999999987776543
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.51 Score=38.65 Aligned_cols=51 Identities=2% Similarity=-0.074 Sum_probs=27.6
Q ss_pred CceEEEeCC-C---------CcEEEEECCCCcEEEEeecC-C-CCeEEEEEecCCCEEEEEeCC
Q 018858 28 PGFVASSGE-D---------GCICWFDLRSKDVQLVTDVG-N-GPVTSLCFKSGNEDIIYVSSG 79 (349)
Q Consensus 28 ~~~l~t~~~-d---------g~i~vwd~~~~~~~~~~~~~-~-~~v~~~~~~~~~~~l~~~~~d 79 (349)
+++++.|+. + ..+.+||..+.+-...-... . ..-.+++. .+++.++.|+.+
T Consensus 66 ~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~ 128 (357)
T 2uvk_A 66 GNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVN 128 (357)
T ss_dssp TEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE-ETTEEEEEECCC
T ss_pred CEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE-ECCEEEEEeCcC
Confidence 577777775 2 46888998876543221111 1 11122222 467777778754
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=95.79 E-value=0.42 Score=35.96 Aligned_cols=29 Identities=3% Similarity=0.004 Sum_probs=21.6
Q ss_pred cceEEEEEccCCCEEEEEcCCCcEEEEEcCC
Q 018858 104 EEINQIVCNPKSSFLACADDGGDVKIIDIRQ 134 (349)
Q Consensus 104 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 134 (349)
..+..++|+|++.+.++ .+|.++-.+..+
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t 69 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPT 69 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCC
Confidence 36789999998886666 667777666543
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.19 Score=37.77 Aligned_cols=105 Identities=10% Similarity=-0.044 Sum_probs=61.5
Q ss_pred eeeEEEEecCCCceEEEeCCCCcEEEEECCCCcE------EEEeec-CCCCeEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 018858 17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDV------QLVTDV-GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM 89 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~------~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 89 (349)
.+..++|+|+ +.+.+. .+|.++-.+..+... -..+-. --....++.|.|+|.+.++ .||.|.-++-.+
T Consensus 42 ~~~~laf~P~-G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 42 NFKFLFLSPG-GELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TCSEEEECTT-SCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred cceeEEECCC-ccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 5779999996 775555 667766666544211 111110 0011367889999987777 569888776533
Q ss_pred CCcccce----eeccCcccceEEEEEccCCCEEEEEcCCCcEE
Q 018858 90 PASWRPL----ESYNYNKEEINQIVCNPKSSFLACADDGGDVK 128 (349)
Q Consensus 90 ~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 128 (349)
.....-+ ..-...-..+..|.+.|+|.+.++. |+.++
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY 157 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence 2111100 0001112467899999999877776 66654
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=95.28 E-value=1.7 Score=39.78 Aligned_cols=113 Identities=7% Similarity=0.139 Sum_probs=64.1
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccc
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRP 95 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 95 (349)
..|.++....+ + .|..|+.+| +..||..+.+...........|.++.. .++ .|..++.+ -|..+|..+++. ..
T Consensus 63 ~~i~~i~~d~~-g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~-~~ 135 (758)
T 3ott_A 63 TRIYCGVIIDN-T-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKL-TS 135 (758)
T ss_dssp SCEEEEEEETT-T-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCE-EE
T ss_pred ceEEEEEEcCC-C-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeE-EE
Confidence 45888777665 4 566666555 789998765432111112234666654 344 56667766 588888765432 11
Q ss_pred eee--ccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceE
Q 018858 96 LES--YNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL 137 (349)
Q Consensus 96 ~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 137 (349)
+.. .......|.++....++...+ |+.+ -+..++..+++.
T Consensus 136 ~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~ 177 (758)
T 3ott_A 136 FDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKF 177 (758)
T ss_dssp ECHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEE
T ss_pred eccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCce
Confidence 110 011134577887777776554 4544 477888776543
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.25 E-value=1 Score=36.90 Aligned_cols=73 Identities=7% Similarity=0.074 Sum_probs=45.5
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeec---cCcccceEEEEEccC---CCEEEEEcC-C-----C
Q 018858 58 NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESY---NYNKEEINQIVCNPK---SSFLACADD-G-----G 125 (349)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~v~~~~~~~~---~~~l~~~~~-d-----g 125 (349)
-.....++|.|+|++ +++...|.|.+++ .++ ...+... .........++++|+ +..|.++.. . .
T Consensus 30 l~~P~~ia~~pdG~l-~V~e~~g~I~~i~--~g~-~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 30 LEVPWALAFLPDGGM-LIAERPGRIRLFR--EGR-LSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp CSCEEEEEECTTSCE-EEEETTTEEEEEE--TTE-EEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CCCceEEEEcCCCeE-EEEeCCCeEEEEE--CCC-ccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 345678999999984 4555679999998 332 2222211 112356889999998 545544332 2 5
Q ss_pred cEEEEEcCC
Q 018858 126 DVKIIDIRQ 134 (349)
Q Consensus 126 ~i~i~d~~~ 134 (349)
.|..++...
T Consensus 106 ~v~r~~~~~ 114 (352)
T 2ism_A 106 QVVRLRHLG 114 (352)
T ss_dssp EEEEEEECS
T ss_pred EEEEEEeCC
Confidence 677777764
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=95.22 E-value=0.87 Score=35.95 Aligned_cols=104 Identities=10% Similarity=0.009 Sum_probs=54.5
Q ss_pred eeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCC-Ccccc
Q 018858 17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP-ASWRP 95 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~ 95 (349)
.|..++.... ..++. . ||.++.|-......+..-......|..++..... .++. . ||.|..|-.... +...+
T Consensus 25 ~i~~ia~G~~--h~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P 97 (282)
T 3qhy_B 25 GVDAIAGGYF--HGLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVP 97 (282)
T ss_dssp SCCEEEECSS--EEEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCC
T ss_pred CCcEEEeCCC--eEEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCC
Confidence 5677766533 33333 4 8999999754321111101112356666654332 2333 4 899999976542 21111
Q ss_pred eeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCC
Q 018858 96 LESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQ 134 (349)
Q Consensus 96 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 134 (349)
.. . ...|..++.... +.+.-. +|.|+.|-...
T Consensus 98 ~~-~---~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~ 129 (282)
T 3qhy_B 98 AE-A---RSGVDAIAAGAW--ASYALK-DGKVIAWGDDS 129 (282)
T ss_dssp GG-G---SSSEEEEEEETT--EEEEEE-TTEEEEEECCT
T ss_pred cc-c---CCCeEEEECcCC--EEEEEe-CCeEEEecCCC
Confidence 11 1 245777766543 333334 89999997653
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=94.58 E-value=1.7 Score=36.14 Aligned_cols=113 Identities=15% Similarity=0.124 Sum_probs=55.2
Q ss_pred ceeeeEEEEecCCCceEEEeCCCC----cEEEEECCCCcEEEEeec--------------CCCCeEEEEEecC--CCEEE
Q 018858 15 KATATCCIASRDRPGFVASSGEDG----CICWFDLRSKDVQLVTDV--------------GNGPVTSLCFKSG--NEDII 74 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~dg----~i~vwd~~~~~~~~~~~~--------------~~~~v~~~~~~~~--~~~l~ 74 (349)
...|.+|++.|.+...|+.++..| .|...+ +.++.-..+.. ....|.++++.|. ...+.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 356999999983344555555444 344332 22332111111 1124777888862 45666
Q ss_pred EEeCCCeEEEEEccCCCcccceeecc----------------CcccceEEEEEccC-CCEEEEEcCCCcEEE
Q 018858 75 YVSSGKEVKSFDVHMPASWRPLESYN----------------YNKEEINQIVCNPK-SSFLACADDGGDVKI 129 (349)
Q Consensus 75 ~~~~dg~i~iwd~~~~~~~~~~~~~~----------------~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i 129 (349)
.++..+.|...+ ..++....+.... .....+.+|.+.|. ...+..+..++.|..
T Consensus 133 ~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~ 203 (394)
T 3b7f_A 133 AGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFE 203 (394)
T ss_dssp EEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEE
T ss_pred EEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEE
Confidence 666566554432 2233333222110 01235778889874 345555544444433
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=94.11 E-value=2.6 Score=38.24 Aligned_cols=107 Identities=9% Similarity=0.127 Sum_probs=59.3
Q ss_pred CceEEEeCCC------CcEEEEECCCCcEEEE--eecCCCCeEEEEEecCCCEEEEEeCCC--eEEEEEccCCCccccee
Q 018858 28 PGFVASSGED------GCICWFDLRSKDVQLV--TDVGNGPVTSLCFKSGNEDIIYVSSGK--EVKSFDVHMPASWRPLE 97 (349)
Q Consensus 28 ~~~l~t~~~d------g~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~ 97 (349)
+.+++.||.+ ..+.+||..+.+-... +...... .+++...+++.++.|+.++ .+.+||..+.. ...+.
T Consensus 452 ~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~-W~~~~ 529 (695)
T 2zwa_A 452 NQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEI-FKDVT 529 (695)
T ss_dssp TEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTE-EEECC
T ss_pred CEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCc-eEEcc
Confidence 6777777754 3578888887543222 1111111 2233324777788887654 68999988653 22222
Q ss_pred e---ccCcccceEEEEEccC-CCEEEEEcC--C-----CcEEEEEcCCce
Q 018858 98 S---YNYNKEEINQIVCNPK-SSFLACADD--G-----GDVKIIDIRQHC 136 (349)
Q Consensus 98 ~---~~~~~~~v~~~~~~~~-~~~l~~~~~--d-----g~i~i~d~~~~~ 136 (349)
. .+........+.+..+ ++.++.|+. + ..+.+||+.+.+
T Consensus 530 ~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 530 PKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp CSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 1 1111222333555554 667777765 2 358888887665
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=93.98 E-value=2.1 Score=34.88 Aligned_cols=81 Identities=9% Similarity=0.082 Sum_probs=48.3
Q ss_pred EeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeec----cCcccceEEEEEccC---CCEEEEE---c
Q 018858 53 VTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESY----NYNKEEINQIVCNPK---SSFLACA---D 122 (349)
Q Consensus 53 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~~v~~~~~~~~---~~~l~~~---~ 122 (349)
.+...-.....|+|.|+|..+++--..|.|++++...++. ..+..+ .........|+++|+ +..|... .
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~-~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~ 104 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRK-TELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA 104 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcE-eeecccCceeecCCCCceeeEeccccccCCEEEEEEecC
Confidence 3333445678999999998666655589999987654432 222211 123456889999995 3444332 2
Q ss_pred CCCcEEEEEcCC
Q 018858 123 DGGDVKIIDIRQ 134 (349)
Q Consensus 123 ~dg~i~i~d~~~ 134 (349)
.++.|.-|.+..
T Consensus 105 ~~~~v~R~~~~~ 116 (347)
T 3das_A 105 SDNRIVRMLYDE 116 (347)
T ss_dssp SSEEEEEEEBCT
T ss_pred CCCEEEEEEeCC
Confidence 344555565543
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=93.94 E-value=2.6 Score=35.87 Aligned_cols=63 Identities=5% Similarity=0.068 Sum_probs=38.4
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeecc------CcccceEEEEEccC---CCEEEEE
Q 018858 58 NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYN------YNKEEINQIVCNPK---SSFLACA 121 (349)
Q Consensus 58 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~~v~~~~~~~~---~~~l~~~ 121 (349)
-.....|+|.|+|+++++-...+.|.+++..++.. ..+..+. ........|+|+|+ +..|...
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~-~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~ 97 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSV-KTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS 97 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcE-eEEecCCccccccCCCCceeEEEECCCcCcCCEEEEE
Confidence 34567999999998666554445788887654432 2222221 12456779999995 4444433
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=93.42 E-value=4.6 Score=36.99 Aligned_cols=119 Identities=11% Similarity=0.056 Sum_probs=68.2
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEee-c-----CCCCeEEEEEecCCCEEEEEeCCCeEEEEEccC
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD-V-----GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM 89 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~-~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 89 (349)
..|.++.-..+ +. |..|. ++-|..+|..+++...... . ....|.++...+++. |..|+..+-|..+|.++
T Consensus 373 ~~v~~i~~d~~-g~-lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigT~~~Gl~~~~~~~ 448 (758)
T 3ott_A 373 NRIRHIYEDKE-QQ-LWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQ-LWISTCLGGIFVVDKHK 448 (758)
T ss_dssp SCEEEEEECTT-SC-EEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSE-EEEEESSSCEEEEEHHH
T ss_pred CceEEEEECCC-CC-EEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCC-EEEEECCCceEEEcccc
Confidence 35888777665 44 44455 3569999988765432211 1 123577777766654 66677666688888652
Q ss_pred C-----Cccc---ceeeccC-cccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEe
Q 018858 90 P-----ASWR---PLESYNY-NKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLY 138 (349)
Q Consensus 90 ~-----~~~~---~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 138 (349)
. .... ......+ ....|.++...+++...+.++..+-|..+|.++++..
T Consensus 449 ~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~ 506 (758)
T 3ott_A 449 LMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVT 506 (758)
T ss_dssp HHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEE
T ss_pred ccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceE
Confidence 1 0000 0000000 1235888888888876653333445888998776543
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=93.14 E-value=4 Score=35.55 Aligned_cols=92 Identities=12% Similarity=0.154 Sum_probs=60.0
Q ss_pred EEEeCCCCcEEEEECCCCcEEEEeecCC-------------------------CCeE--EEEEe---cCCCEEEEEe-CC
Q 018858 31 VASSGEDGCICWFDLRSKDVQLVTDVGN-------------------------GPVT--SLCFK---SGNEDIIYVS-SG 79 (349)
Q Consensus 31 l~t~~~dg~i~vwd~~~~~~~~~~~~~~-------------------------~~v~--~~~~~---~~~~~l~~~~-~d 79 (349)
|.+|+..|.++|+-+.+++.+..+...+ +... .+.+. -+|++|+.-. ..
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 7789999999999999999888764321 1111 23332 2567777665 35
Q ss_pred CeEEEEEccCCCcccceeeccCcccceEEEEEc--cCCCEEEEEcCC
Q 018858 80 KEVKSFDVHMPASWRPLESYNYNKEEINQIVCN--PKSSFLACADDG 124 (349)
Q Consensus 80 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d 124 (349)
..|-..+++..++.+.+.. + +...+..+.+- |+..+++++++.
T Consensus 153 ~RvAri~l~~~~~d~Ii~i-P-n~~~~Hg~~~~~~p~T~yv~~~~e~ 197 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITV-P-NVQAIHGLRLQKVPHTKYVFANAEF 197 (638)
T ss_dssp TEEEEEETTTTEEEEEEEC-T-TCSCEEEEEECCSSBCCEEEEEECS
T ss_pred cceEEEECCcEeeceeEeC-C-CCcCcccccccccCCccEEEeccee
Confidence 6777788877655444433 2 23567777775 677888887763
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=91.92 E-value=2.2 Score=40.25 Aligned_cols=35 Identities=26% Similarity=0.138 Sum_probs=29.1
Q ss_pred ceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCccee
Q 018858 266 AASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ 303 (349)
Q Consensus 266 ~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 303 (349)
.+.++... ++..++++-+.|+++|+|++.+++...
T Consensus 237 ~~~~~~~~---~~~~~lftl~~D~~LRiWsl~t~~~v~ 271 (950)
T 4gq2_M 237 TIISMIFL---STYNVLVMLSLDYKLKVLDLSTNQCVE 271 (950)
T ss_dssp CEEEEEEE---TTTTEEEEEETTCEEEEEETTTTEEEE
T ss_pred eEEEEeec---CCCcEEEEEECCCEEEEEECCCCCeEe
Confidence 45667666 788899999999999999999986543
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=90.51 E-value=5.1 Score=34.97 Aligned_cols=75 Identities=4% Similarity=-0.132 Sum_probs=51.4
Q ss_pred CeEEEEEecCCCEEEEEeC-CCeEEEEEccCC------Cc---ccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEE
Q 018858 60 PVTSLCFKSGNEDIIYVSS-GKEVKSFDVHMP------AS---WRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKI 129 (349)
Q Consensus 60 ~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~------~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 129 (349)
....+..+|+|++++.++. +.++.++|++.. +. ...+.....-.......+|.++|....+---|..|.-
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvk 403 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVK 403 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEE
Confidence 3457888999999888775 679999999841 10 0111111112345678899999965566668999999
Q ss_pred EEcCC
Q 018858 130 IDIRQ 134 (349)
Q Consensus 130 ~d~~~ 134 (349)
|++..
T Consensus 404 Wni~~ 408 (638)
T 3sbq_A 404 WNMEE 408 (638)
T ss_dssp EEHHH
T ss_pred EeccH
Confidence 99864
|
| >1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1 | Back alignment and structure |
|---|
Probab=90.20 E-value=6.1 Score=31.63 Aligned_cols=197 Identities=11% Similarity=0.088 Sum_probs=107.5
Q ss_pred CceEEEeCCCCcEEEEECCCCc-------EEEE--eecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcc-----
Q 018858 28 PGFVASSGEDGCICWFDLRSKD-------VQLV--TDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASW----- 93 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~-------~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----- 93 (349)
..++++.+.+|.|+--.+..-+ -+.. ++. ...+..+......+.++..+..|.++-+....-...
T Consensus 8 e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~ 86 (312)
T 1suu_A 8 ENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASK 86 (312)
T ss_dssp CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC------
T ss_pred CCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCC
Confidence 5678888899999877654321 1111 222 234555555556677888888998877765421000
Q ss_pred -cc---eeeccCcccceEEEEEcc---CCCEEEEEcCCCcEEEEEcCCc-------eEeceeccccccceeEEEEccCCC
Q 018858 94 -RP---LESYNYNKEEINQIVCNP---KSSFLACADDGGDVKIIDIRQH-------CLYKSLRAGHSSICSSVQFIPWKP 159 (349)
Q Consensus 94 -~~---~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~ 159 (349)
.+ .-.+.. ...+..+...+ +..+++..+..|.++...+..- .....+. ..+.+-.+....
T Consensus 87 G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~--~~d~lv~~~~~~--- 160 (312)
T 1suu_A 87 GQNISELINLGD-QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLN--DKDFVTSAEIVF--- 160 (312)
T ss_dssp -CBGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCC--TTCCEEEEEEEC---
T ss_pred CcChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecC--CCCEEEEEEEeC---
Confidence 00 111222 23444443332 4567888899999998877532 2222232 123333333322
Q ss_pred CCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccE
Q 018858 160 WEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIR 239 (349)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (349)
.+..++..+.+|.+..+....-.....
T Consensus 161 ---------------------------------~~~~i~l~T~~G~~~r~~~~ev~~~gR-------------------- 187 (312)
T 1suu_A 161 ---------------------------------KDEKVICLSKKGSAFIFNSRDVRLTNR-------------------- 187 (312)
T ss_dssp ---------------------------------TTCEEEEEETTSEEEEEEGGGSCBCCT--------------------
T ss_pred ---------------------------------CCCEEEEEeCCCcEEEEEHHHccccCC--------------------
Confidence 345677888899998888764110000
Q ss_pred EEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCC
Q 018858 240 DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 299 (349)
.........+.. ...|..+... .++..+++.+..|..+..++...
T Consensus 188 -----------~~~Gv~~i~L~~-~d~vv~~~~v---~~~~~l~~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 188 -----------GTQGVCGMKLKE-GDLFVKVLSV---KENPYLLIVSENGYGKRLNMSKI 232 (312)
T ss_dssp -----------TBCCEECCCCCT-TCCEEEEEEC---TTCSEEEEEETTSEEEEEEGGGS
T ss_pred -----------CCCCeEeEEeCC-CCEEEEEEEE---CCCCeEEEEECCCceEEEEHHHh
Confidence 000111122332 2345555444 45567888888999999988664
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=89.63 E-value=6.7 Score=31.23 Aligned_cols=117 Identities=10% Similarity=0.216 Sum_probs=64.2
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCC--------------CCcEEEEECCCCcEEEEeecCCCCeEEEEEecC
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGE--------------DGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSG 69 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~--------------dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 69 (349)
.+...+.|... . +--++++ +++|+-+.. ...|+..+++..+...... .. ...|+++
T Consensus 45 dg~~~~~l~~~--~--~~~i~~~-g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~---~~--~~~~s~~ 114 (302)
T 3s25_A 45 DGSNIHKLSND--T--AMYINAD-KNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDP---DP--CIYASLI 114 (302)
T ss_dssp TSCSCEEEEEE--E--EEEEEEC-SSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEEC---SC--EEEEEEE
T ss_pred CCCCCEEccCC--c--eeeEEEc-CCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeec---CC--ccEEEEe
Confidence 44445555432 2 3356777 556554433 2467777777665332222 11 2367888
Q ss_pred CCEEEEEe--CCC--eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcC-CCcEEEEEcCCceEe
Q 018858 70 NEDIIYVS--SGK--EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD-GGDVKIIDIRQHCLY 138 (349)
Q Consensus 70 ~~~l~~~~--~dg--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~ 138 (349)
++.|+... .++ .|...++... ..+.+.. + .+ .+++++++.|+-.+. ...|++.++..+...
T Consensus 115 g~~Iy~~~~~~~~~~~Iy~~~~dGs-~~~~lt~---~--~~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~ 180 (302)
T 3s25_A 115 GNYIYYLHYDTQTATSLYRIRIDGE-EKKKIKN---H--YL--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA 180 (302)
T ss_dssp TTEEEEEEESSSSCEEEEEEETTSC-CCEEEES---S--CC--CCSEEETTEEEEECTTTCCEEEEETTTTEEE
T ss_pred CCEEEEEeecCCCCceEEEEECCCC-CeEEEeC---C--Cc--eEeeEECCEEEEEeCCCceEEEEECCCCCEE
Confidence 99988776 344 4555555532 2222222 1 12 356778877775554 677888888766543
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.35 E-value=4 Score=33.14 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=24.5
Q ss_pred CEEEEEcCCCcEEEEEcCCceEeceec
Q 018858 116 SFLACADDGGDVKIIDIRQHCLYKSLR 142 (349)
Q Consensus 116 ~~l~~~~~dg~i~i~d~~~~~~~~~~~ 142 (349)
..++.++.||.|+-+|.++|+.+.+++
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~ 37 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIE 37 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEec
Confidence 478889999999999999999998887
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=87.10 E-value=10 Score=30.21 Aligned_cols=146 Identities=8% Similarity=0.083 Sum_probs=76.5
Q ss_pred CCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCC--------------CeEEEEEccCCCcccceeeccCc
Q 018858 37 DGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG--------------KEVKSFDVHMPASWRPLESYNYN 102 (349)
Q Consensus 37 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------g~i~iwd~~~~~~~~~~~~~~~~ 102 (349)
++.|+..+.+..... .+... .+--+++++++|+.+... ..|+..++...+ ...+..
T Consensus 36 ~~~ly~~~~dg~~~~-~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~-~~~l~~---- 105 (302)
T 3s25_A 36 NGRLYAMNIDGSNIH-KLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHG-STVLDP---- 105 (302)
T ss_dssp TTEEEEEETTSCSCE-EEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCC-CEEEEC----
T ss_pred CceEEEEcCCCCCCE-EccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCc-ceEeec----
Confidence 466777776544432 22211 123457889998877643 356777776543 222222
Q ss_pred ccceEEEEEccCCCEEEEEc--C--CCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCce
Q 018858 103 KEEINQIVCNPKSSFLACAD--D--GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAF 178 (349)
Q Consensus 103 ~~~v~~~~~~~~~~~l~~~~--~--dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (349)
.. ...|++++++|+-.. . ...|+..++.... ...+. .+.. .+++|
T Consensus 106 -~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt-~~~~----~~~~~---------------------- 154 (302)
T 3s25_A 106 -DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIK-NHYL----FTCNT---------------------- 154 (302)
T ss_dssp -SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEE-SSCC----CCSEE----------------------
T ss_pred -CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEe-CCCc----eEeeE----------------------
Confidence 11 236777888887665 2 3445555655332 23333 2221 23445
Q ss_pred eEEeecCcccccCCCCcEEEEEc-CCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEE
Q 018858 179 VHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE 242 (349)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (349)
+++.|.-.+ ....|...++............ . ..++.|++.+++.
T Consensus 155 --------------~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~~----~-~~~~~P~g~~iy~ 200 (302)
T 3s25_A 155 --------------SDRYFYYNNPKNGQLYRYDTASQSEALFYDCN----C-YKPVVLDDTNVYY 200 (302)
T ss_dssp --------------ETTEEEEECTTTCCEEEEETTTTEEEEEECSC----E-EEEEEEETTEEEE
T ss_pred --------------ECCEEEEEeCCCceEEEEECCCCCEEEEeCCC----c-cceeeecCCEEEE
Confidence 455555444 4678888888765433332211 1 1235577777763
|
| >3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=86.72 E-value=9.9 Score=29.77 Aligned_cols=206 Identities=14% Similarity=0.045 Sum_probs=105.5
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEE---ccCCCcccceeeccCcccceEEEEEcc-CCCEEEEEcCCCcEEEEEcCC
Q 018858 59 GPVTSLCFKSGNEDIIYVSSGKEVKSFD---VHMPASWRPLESYNYNKEEINQIVCNP-KSSFLACADDGGDVKIIDIRQ 134 (349)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd---~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~ 134 (349)
..+..+.-....++|+.-+..|.++--. +..... ..+ +. ....|..+.... ++.+++..+.+|.++...+..
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~-~~l--l~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~ 99 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSK-VSL--KS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAE 99 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEE-CCC--SS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGG
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcc-ccc--CC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHH
Confidence 3455554444556677777778665433 322211 112 32 234555553322 467899999999999988754
Q ss_pred ce------EeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEE
Q 018858 135 HC------LYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDV 208 (349)
Q Consensus 135 ~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 208 (349)
-. ....++ ..+.+..+.... ....++..+..|.+..
T Consensus 100 ~~~~~~G~~~i~lk--egD~l~~~~~~~------------------------------------~~~~ill~T~~G~~~r 141 (276)
T 3no0_A 100 FEYKAQGMPIIKLT--EGDEVVSIASSV------------------------------------DETHILLFTKKGRVAR 141 (276)
T ss_dssp TTTCSTTEECSCCC--TTCCEEEEEECC------------------------------------SSCEEEEEETTSEEEE
T ss_pred hhhhcCCeEEEecC--CCCEEEEEEEeC------------------------------------CCCEEEEEECCCEEEE
Confidence 32 112222 223333333322 3456777788898888
Q ss_pred EEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCC
Q 018858 209 INIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND 288 (349)
Q Consensus 209 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d 288 (349)
++...-...... ........+.. ...|..+... +++.+++..+..
T Consensus 142 ~~~~eip~~gR~-------------------------------a~Gv~~i~L~~-~d~vv~~~~~---~~~~~ll~~T~~ 186 (276)
T 3no0_A 142 FSVREVPPSTPG-------------------------------ARGVQGIKLEK-NDETSGLRIW---NGEPYLLVITAK 186 (276)
T ss_dssp EEGGGSCBCCTT-------------------------------CCCEECCCCCT-TCCEEEEEEE---SSCSEEEEEETT
T ss_pred EEhhhCCCcCCC-------------------------------CCCEEEEccCC-CCEEEEEEEe---CCCCEEEEEeCC
Confidence 876542100000 00011112332 2455555554 456788888999
Q ss_pred CeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEE
Q 018858 289 KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKV 345 (349)
Q Consensus 289 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 345 (349)
|.++...+.......... +-+..+ ...+.+..+.... +.+.++..+.+|.+..
T Consensus 187 G~~kr~~~~e~~~~~R~g--kGv~~i-~~~~~lv~~~~~~-~~~~i~~~t~~G~~ir 239 (276)
T 3no0_A 187 GRVKKISHEEIPKTNRGV--KGTEVS-GTKDTLVDLIPIK-EEVELLITTKNGKAFY 239 (276)
T ss_dssp SCEEEEEGGGSCCCCTTC--CCEECC-CSSSCEEEEEEES-SEEEEEEEETTSCEEE
T ss_pred CcEEEeEHHHcccCCCCC--cceEEE-cCCCcEEEEEEeC-CCCEEEEEcCCCeEEE
Confidence 999988876543221111 111111 2234454443322 3335677777777665
|
| >3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=86.32 E-value=12 Score=30.23 Aligned_cols=75 Identities=9% Similarity=-0.021 Sum_probs=46.1
Q ss_pred CCCeEEEEEec---CCCEEEEEeCCCeEEEEEccCCCcc----cceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEE
Q 018858 58 NGPVTSLCFKS---GNEDIIYVSSGKEVKSFDVHMPASW----RPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKII 130 (349)
Q Consensus 58 ~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 130 (349)
...|..+...+ +..+++.++.+|.++.-.+..-... .....+.. .+.+..+........++..+..|.+..+
T Consensus 94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf 172 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRF 172 (327)
T ss_dssp TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEE
T ss_pred CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEE
Confidence 44565554333 5789999999999999887642111 11112222 2445555444455677778888888888
Q ss_pred EcC
Q 018858 131 DIR 133 (349)
Q Consensus 131 d~~ 133 (349)
...
T Consensus 173 ~~~ 175 (327)
T 3uc1_A 173 SAT 175 (327)
T ss_dssp ECC
T ss_pred ECc
Confidence 765
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=86.17 E-value=15 Score=31.33 Aligned_cols=107 Identities=14% Similarity=0.124 Sum_probs=58.0
Q ss_pred eeeEEEEecCCCc-eEEEeCCCCcEEEEECCCC---cEEEEee---------cCCCCeEEEEEecC----CCEEEEEeC-
Q 018858 17 TATCCIASRDRPG-FVASSGEDGCICWFDLRSK---DVQLVTD---------VGNGPVTSLCFKSG----NEDIIYVSS- 78 (349)
Q Consensus 17 ~i~~~~~~~~~~~-~l~t~~~dg~i~vwd~~~~---~~~~~~~---------~~~~~v~~~~~~~~----~~~l~~~~~- 78 (349)
.-+.|+|.|+ +. .|+.+...|.|++++.... ..+..+. ........|+++|+ +...++-+.
T Consensus 15 ~P~~~a~~pd-G~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 15 QPVGALHSGD-GSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SEEEEECCSS-SSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CceEEEECCC-CCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 3467899998 54 3444566799999975422 1122221 11457889999985 333333221
Q ss_pred -C----------CeEEEEEccCC--C-----cccceeecc--CcccceEEEEEccCCCEEEEEcCC
Q 018858 79 -G----------KEVKSFDVHMP--A-----SWRPLESYN--YNKEEINQIVCNPKSSFLACADDG 124 (349)
Q Consensus 79 -d----------g~i~iwd~~~~--~-----~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d 124 (349)
+ ..|.-|.+..+ . ..+.+.... ........|+|.||+.+.++.+..
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 1 14555666431 1 111221111 112345789999999777765543
|
| >3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=86.09 E-value=13 Score=30.57 Aligned_cols=106 Identities=14% Similarity=0.193 Sum_probs=62.5
Q ss_pred cCCCceEEEeCCCCcEEEEECCC---------CcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccC---CC-
Q 018858 25 RDRPGFVASSGEDGCICWFDLRS---------KDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHM---PA- 91 (349)
Q Consensus 25 ~~~~~~l~t~~~dg~i~vwd~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~- 91 (349)
|+ ..++++.+.+|.|+--.+.. +.....++ ....+..+......+.|+..+..|.++-+.... ..
T Consensus 5 ~~-e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 5 AP-EDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CC-CCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred cC-CCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 44 67888899999998764321 22223333 344566666666677788888888777665432 10
Q ss_pred --ccccee---eccCcccceEEEE-Ecc--CCCEEEEEcCCCcEEEEEcC
Q 018858 92 --SWRPLE---SYNYNKEEINQIV-CNP--KSSFLACADDGGDVKIIDIR 133 (349)
Q Consensus 92 --~~~~~~---~~~~~~~~v~~~~-~~~--~~~~l~~~~~dg~i~i~d~~ 133 (349)
....+. .+.. ...|..+. ... ++.+|+.++..|.++...+.
T Consensus 83 ~a~G~~i~~ll~L~~-~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~ 131 (370)
T 3l6v_A 83 NARGRPIINWIPLES-GERVQAVLPVREYADNRYVFMATRNGTVKKTPLS 131 (370)
T ss_dssp TSCCEEGGGSCCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGG
T ss_pred ccCCcCHhhccCCCC-CCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHH
Confidence 011111 1222 23454443 322 35689999999999988865
|
| >3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=85.99 E-value=12 Score=30.13 Aligned_cols=246 Identities=11% Similarity=0.042 Sum_probs=120.0
Q ss_pred ceEEEeCCCCcEEEEECCC-------CcEEEEeec-CCCCeEEEEEecCCCEEEEEeCCCeEEEEEcc---CCC---ccc
Q 018858 29 GFVASSGEDGCICWFDLRS-------KDVQLVTDV-GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVH---MPA---SWR 94 (349)
Q Consensus 29 ~~l~t~~~dg~i~vwd~~~-------~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~~---~~~ 94 (349)
..+++.+.+|.|+--.+.+ ++-+..+.. ....+..+......+.|+.-+..|.++-.... ... ...
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~ 83 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQ 83 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCE
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCE
Confidence 4667777778777654321 111111111 12345555555566677777778876655432 210 111
Q ss_pred ce---eeccCcccceEEE-EEcc--CCCEEEEEcCCCcEEEEEcCCce-------EeceeccccccceeEEEEccCCCCC
Q 018858 95 PL---ESYNYNKEEINQI-VCNP--KSSFLACADDGGDVKIIDIRQHC-------LYKSLRAGHSSICSSVQFIPWKPWE 161 (349)
Q Consensus 95 ~~---~~~~~~~~~v~~~-~~~~--~~~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~ 161 (349)
++ -.+.. ...|..+ ...+ +..+++..+.+|.++...+..-. ....++ ..+.+..+....
T Consensus 84 ~i~~~l~l~~-~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lk--e~D~lv~~~~~~----- 155 (327)
T 3uc1_A 84 HVANLLAFQP-EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLR--DNDELVGAVLCS----- 155 (327)
T ss_dssp EHHHHTTCCT-TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCC--TTCCEEEEEEEC-----
T ss_pred EHHHccCCCC-CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEEC--CCCEEEEEEEec-----
Confidence 11 11222 2344444 4432 46899999999999988875422 122233 223333333322
Q ss_pred CCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEE
Q 018858 162 GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA 241 (349)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (349)
....++..+..|.+..+.....+.+..... .
T Consensus 156 -------------------------------~~d~ill~T~~G~~~rf~~~~~eip~~gr~------------a------ 186 (327)
T 3uc1_A 156 -------------------------------AGDDLLLVSANGQSIRFSATDEALRPMGRA------------T------ 186 (327)
T ss_dssp -------------------------------TTCEEEEEETTSEEEEEECCTTTSCCCCTT------------S------
T ss_pred -------------------------------CCCEEEEEECCCeEEEEECcccccCcCCcC------------C------
Confidence 345677777889888887762110000000 0
Q ss_pred EeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccce
Q 018858 242 EMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKV 321 (349)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v 321 (349)
.......+.. ...|.++... +++.+++..+..|.++.-.+.................+..-.+.+
T Consensus 187 -----------~Gv~~i~L~~-~d~Vv~~~~~---~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~l 251 (327)
T 3uc1_A 187 -----------SGVQGMRFNI-DDRLLSLNVV---REGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRL 251 (327)
T ss_dssp -----------BCEESSCCCT-TCCEEEEEEC---CTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSE
T ss_pred -----------CCeeeecCCC-CCEEEEEEEE---CCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeE
Confidence 0011112322 3456666555 456688889999999888876543221111111111121213345
Q ss_pred EEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 322 NWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 322 ~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
..+.... +.+.++..+.+|.+.-++
T Consensus 252 v~~~~~~-~~~~i~l~T~~G~~ir~~ 276 (327)
T 3uc1_A 252 VGALIVD-DDSELYAVTSGGGVIRTA 276 (327)
T ss_dssp EEEEEEC-TTCEEEEEEGGGCEEEEE
T ss_pred EEEEEeC-CCccEEEEcCCCeEEEEe
Confidence 4444333 333566666676655544
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=85.12 E-value=1.5 Score=42.35 Aligned_cols=35 Identities=26% Similarity=0.138 Sum_probs=28.0
Q ss_pred ceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCccee
Q 018858 266 AASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ 303 (349)
Q Consensus 266 ~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 303 (349)
.+.++... ++..++++-+.|+++|||++.++..+.
T Consensus 239 ~~vs~~~~---~~~~~lftL~~D~~LRiWsl~t~~~v~ 273 (1139)
T 4fhn_B 239 TIISMIFL---STYNVLVMLSLDYKLKVLDLSTNQCVE 273 (1139)
T ss_dssp CBSCCEEE---TTTTEEEEEBTTCEEEEEETTTTEEEE
T ss_pred eeEEeecc---CCccEEEEEeCCCEEEEEECCCCCeEE
Confidence 34455555 688999999999999999999986553
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=82.91 E-value=21 Score=30.41 Aligned_cols=56 Identities=7% Similarity=0.046 Sum_probs=35.3
Q ss_pred CCeEEEEEecCCC-EEEEEeCCCeEEEEEccCCCcccceeecc---------CcccceEEEEEccC
Q 018858 59 GPVTSLCFKSGNE-DIIYVSSGKEVKSFDVHMPASWRPLESYN---------YNKEEINQIVCNPK 114 (349)
Q Consensus 59 ~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~ 114 (349)
.....|+|.|++. .|+++...|.|++++.........+..+. ........|+++|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 3467899999996 56677788999999753221111111111 11356788999996
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=80.80 E-value=9.6 Score=36.05 Aligned_cols=38 Identities=11% Similarity=0.161 Sum_probs=32.4
Q ss_pred ceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceec
Q 018858 105 EINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR 142 (349)
Q Consensus 105 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 142 (349)
.+.+++..++..++++-+.|+.+|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 45677777888899999999999999999999887654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 349 | ||||
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-14 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-05 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-04 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-11 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 0.001 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 6e-10 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-04 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 8e-08 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 0.002 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-07 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-06 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-04 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-04 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 3e-06 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-06 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 7e-06 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 0.002 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-05 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 5e-05 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 5e-04 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-05 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 8e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 3e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.002 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 7e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.001 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 0.001 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.003 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 70.9 bits (172), Expect = 2e-14
Identities = 39/329 (11%), Positives = 99/329 (30%), Gaps = 68/329 (20%)
Query: 11 LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGN 70
L GH++ T I + S+ ED I +D + D + V + F
Sbjct: 13 LSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 71
Query: 71 E---------------------------------------DIIYVSSGKEVKSFDVHMPA 91
+ + ++ S K+ +
Sbjct: 72 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 131
Query: 92 SWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSS 151
+ ++++ ++E + + N + +A + V++ + LR H +
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR-EHRHVVEC 190
Query: 152 VQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINI 211
+ + P + + E G+ + + D + + ++
Sbjct: 191 ISWAPESSYSSISEATGSETKKSGK----------------PGPFLLSGSRDKTIKMWDV 234
Query: 212 ESELNISRSKSTTKPLKGSQSTSKVNI-----RDAEMEILDQSGGKRLHLDYSVGGHTAA 266
+ + + ++G S D + + D + + ++ H
Sbjct: 235 STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK---TLNAHEHF 291
Query: 267 ASCVAFSMFGERGKYLISGGNDKLVKVWD 295
+ + F + Y+++G D+ VKVW+
Sbjct: 292 VTSLDFH---KTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 43.2 bits (100), Expect = 2e-05
Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 1/78 (1%)
Query: 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKS 68
L GH + F+ S +D + +D ++K + VTSL F
Sbjct: 241 MTLVGHDNWVRGVLFHSGGK-FILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHK 299
Query: 69 GNEDIIYVSSGKEVKSFD 86
++ S + VK ++
Sbjct: 300 TAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.9 bits (94), Expect = 1e-04
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 258 YSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 304
Y++ GH + + V F ++S D +KVWD +T
Sbjct: 11 YALSGHRSPVTRVIFH---PVFSVMVSASEDATIKVWDYETGDFERT 54
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 61.3 bits (147), Expect = 4e-11
Identities = 34/305 (11%), Positives = 81/305 (26%), Gaps = 22/305 (7%)
Query: 5 EAKPRR-LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTS 63
+ + RR LRGH A D + S+ +DG + +D + + + + V +
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSR-LLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT 102
Query: 64 LCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD 123
+ + +++ + + + +
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 124 GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPEN------NGNAGQCYNPA 177
+ DI + + S + + + + G C
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF 222
Query: 178 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVN 237
H I D + ++ ++ + + + +
Sbjct: 223 TGHESDINAIC-FFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 281
Query: 238 IR-------DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKL 290
R D + D R + GH SC+ + + G + +G D
Sbjct: 282 GRLLLAGYDDFNCNVWDALKADRAG---VLAGHDNRVSCLGVT---DDGMAVATGSWDSF 335
Query: 291 VKVWD 295
+K+W+
Sbjct: 336 LKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 37.8 bits (86), Expect = 0.001
Identities = 12/80 (15%), Positives = 26/80 (32%), Gaps = 3/80 (3%)
Query: 246 LDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTS 305
+D G ++ ++ GH A + + + L+S D + +WD V
Sbjct: 37 IDPVGRIQMRTRRTLRGHLAKIYAMHWG---TDSRLLVSASQDGKLIIWDSYTTNKVHAI 93
Query: 306 INNDLLIKNINLNKKVNWLC 325
+ N++
Sbjct: 94 PLRSSWVMTCAYAPSGNYVA 113
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 57.3 bits (136), Expect = 6e-10
Identities = 33/299 (11%), Positives = 81/299 (27%), Gaps = 16/299 (5%)
Query: 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRS-KDVQLVTDVGNGPVTSLCFK 67
+ GH T +S D + S+ +G I +D+ + ++ DV +T +
Sbjct: 6 QVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 64
Query: 68 SGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDV 127
S D+ VS +K N + + + A
Sbjct: 65 S-KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIA 123
Query: 128 KIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDA 187
+ + S + ++ + QF+ + +G +
Sbjct: 124 IYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEIT 183
Query: 188 DMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNI--------- 238
+ N +VA + + ++ + +
Sbjct: 184 SVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGS 243
Query: 239 RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS 297
D + + + + + ++ + V + ++S G D +K W+
Sbjct: 244 LDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL----NETTIVSAGQDSNIKFWNVP 298
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.4 bits (92), Expect = 2e-04
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 262 GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 304
GH A + ++ S GK L S + + WD S +
Sbjct: 10 GHNKAITALSSS---ADGKTLFSADAEGHINSWDISTGISNRV 49
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.0 bits (120), Expect = 8e-08
Identities = 23/155 (14%), Positives = 45/155 (29%), Gaps = 6/155 (3%)
Query: 8 PRR--LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLC 65
P+R LRGH + C+ D +V + +D I +D +K L +G V +L
Sbjct: 3 PQRTTLRGHMTSVITCLQFEDN--YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALK 60
Query: 66 FKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGG 125
+ G I+ S + + + IV ++
Sbjct: 61 YAHGG--ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN 118
Query: 126 DVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPW 160
+ + + + H +
Sbjct: 119 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYF 153
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.2 bits (84), Expect = 0.002
Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 262 GHTAAA-SCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 304
GH + +C+ F Y+I+G +DK+++V+D + +
Sbjct: 10 GHMTSVITCLQFE-----DNYVITGADDKMIRVYDSINKKFLLQ 48
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.0 bits (115), Expect = 3e-07
Identities = 36/300 (12%), Positives = 72/300 (24%), Gaps = 24/300 (8%)
Query: 58 NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYN--KEEINQIVCNPKS 115
V ++ S +Y VK +D+ P + P+ + I P
Sbjct: 51 GEVVCAVTI-SNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG 109
Query: 116 SFLACADDGGDVKIIDIRQHCLYKSL-------RAGHSSICSSVQFIPWKPWEGLPENNG 168
L + + I D+ +I + +G
Sbjct: 110 CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD 169
Query: 169 NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLK 228
Q F + D V ++ + + T++
Sbjct: 170 LHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFS 229
Query: 229 GSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGND 288
+ + + Y + H + + F+ GK+ +S G D
Sbjct: 230 LGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFA---YCGKWFVSTGKD 286
Query: 289 KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348
L+ W I + V + + +V K VY +
Sbjct: 287 NLLNAWRTPYGA----------SIFQSKESSSVLSCDISVD-DKYIVTGSGDKKATVYEV 335
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.7 bits (109), Expect = 2e-06
Identities = 38/301 (12%), Positives = 82/301 (27%), Gaps = 18/301 (5%)
Query: 8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFK 67
P+ L+GH C+ + S +D + + + G V S +
Sbjct: 9 PKVLKGHDDHVITCLQFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR 66
Query: 68 SGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDV 127
+V + + + + + + K D +
Sbjct: 67 DNIIISGSTDRTLKVWNAETGECIHT-----LYGHTSTVRCMHLHEKRVVSGSRDA--TL 119
Query: 128 KIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPEN-NGNAGQCYNPAFVHAIAIPD 186
++ DI L +++ +
Sbjct: 120 RVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNR 179
Query: 187 ADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKV---NIRDAEM 243
L V D + V ++E+ I G + + D+ +
Sbjct: 180 VYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTV 239
Query: 244 EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ 303
+I D G+ L H +A +C+ F ++I+ +D VK+WD + ++
Sbjct: 240 KIWDIKTGQCLQTLQGPNKHQSAVTCLQF-----NKNFVITSSDDGTVKLWDLKTGEFIR 294
Query: 304 T 304
Sbjct: 295 N 295
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.8 bits (91), Expect = 3e-04
Identities = 29/214 (13%), Positives = 62/214 (28%), Gaps = 8/214 (3%)
Query: 110 VCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP--WKPWEGLPENN 167
+ + D +K+ ++L GH+ S Q
Sbjct: 22 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV-GHTGGVWSSQMRDNIIISGSTDRTLK 80
Query: 168 GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPL 227
+ + K V D + V +IE+ + +
Sbjct: 81 VWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAV 140
Query: 228 KGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN 287
+ Q + + A ++ + +++ GHT + F G +++SG
Sbjct: 141 RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD-----GIHVVSGSL 195
Query: 288 DKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKV 321
D ++VWD + T + L + L +
Sbjct: 196 DTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNI 229
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.8 bits (91), Expect = 3e-04
Identities = 22/152 (14%), Positives = 50/152 (32%), Gaps = 11/152 (7%)
Query: 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKS 68
L+GH V S D I +D+ + + + + K
Sbjct: 171 HTLQGHTNRVYSLQFD---GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD 227
Query: 69 GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVK 128
++ ++ VK +D+ + L+ N ++ + + N + D G VK
Sbjct: 228 NI--LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDD--GTVK 283
Query: 129 IIDIRQHCLYKSLRA----GHSSICSSVQFIP 156
+ D++ ++L G + ++
Sbjct: 284 LWDLKTGEFIRNLVTLESGGSGGVVWRIRASN 315
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.1 bits (107), Expect = 3e-06
Identities = 30/299 (10%), Positives = 70/299 (23%), Gaps = 42/299 (14%)
Query: 9 RRLRGHKATATCCIA-SRDRPG-FVASSGEDGCICWFDLRSKDVQL--------VTDVGN 58
+ GH ++ + S + ++ S E G + + V
Sbjct: 56 VQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLA 115
Query: 59 GPVTSLCFKSGNEDIIYVSSGKE--VKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSS 116
GP++ + + + V G++ S + ++ + P S
Sbjct: 116 GPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRS 175
Query: 117 FLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNP 176
D + S V+F P + + C++
Sbjct: 176 MTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDG 235
Query: 177 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKV 236
+ + D I ++ D +
Sbjct: 236 KSGEFLKYIEDDQEPVQGGIFALSWLDSQKFA-----------------------TVG-- 270
Query: 237 NIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD 295
DA + + D + K + + +IS D + ++
Sbjct: 271 --ADATIRVWDVTTSKCVQ---KWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.8 bits (101), Expect = 1e-05
Identities = 42/344 (12%), Positives = 86/344 (25%), Gaps = 34/344 (9%)
Query: 8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDV---GNGPVTSL 64
P R T G+ + D V V G+ VT++
Sbjct: 13 PSTQRNF---TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTV 69
Query: 65 CFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDG 124
F S + Y+ SG E V + S N + Q++ P S ++ +G
Sbjct: 70 KF-SPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISD-ISWDFEG 127
Query: 125 GDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAI 184
+ ++ + + + V + + + +
Sbjct: 128 RRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFY 187
Query: 185 PDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEME 244
+ +G V DV S + + I
Sbjct: 188 QGPPFKFSASDRTHHKQGSFVRDVEF-------------------SPDSGEFVITVGSDR 228
Query: 245 ILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 304
+ GK + F++ + + G D ++VWD + + VQ
Sbjct: 229 KISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQK 288
Query: 305 SINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348
+ T + ++ + Y +
Sbjct: 289 -------WTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.7 bits (106), Expect = 3e-06
Identities = 30/295 (10%), Positives = 67/295 (22%), Gaps = 24/295 (8%)
Query: 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKS 68
+ + GH T + + S DG I + S + + + SL
Sbjct: 7 KTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSS-----MHQDHSNLIVSLDNSK 56
Query: 69 GNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVK 128
E S + + + + V L GD+
Sbjct: 57 AQE--YSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDII 114
Query: 129 IIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDAD 188
+ + + + ++ + A I+I ++
Sbjct: 115 KSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSE 174
Query: 189 MLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ 248
+ + S SK K ++ + + ++
Sbjct: 175 TYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGS 234
Query: 249 SGGKRLHLDYSVG--------GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD 295
H + + + L+S G D +K W+
Sbjct: 235 LDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWE----TPSTLVSSGADACIKRWN 285
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.8 bits (104), Expect = 7e-06
Identities = 40/301 (13%), Positives = 92/301 (30%), Gaps = 27/301 (8%)
Query: 9 RRLRGHKATATC--CIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCF 66
+R+ T+ C+ D+ + S D I +D + + + + G V L +
Sbjct: 6 QRIHCRSETSKGVYCLQYDDQ--KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY 63
Query: 67 KSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGD 126
D + +G + V + L + ++ E + + N D
Sbjct: 64 -----DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIA 118
Query: 127 VKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAI--AI 184
V + + + GH + + V F + FV +
Sbjct: 119 VWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK 178
Query: 185 PDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKP----------LKGSQSTS 234
L +++ V D + + +IE + + + +
Sbjct: 179 RGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDG 238
Query: 235 KVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVW 294
K+ + D + ++ L L ++ H+ + F ++S +D + +W
Sbjct: 239 KIKVWDLVAALDPRAPAGTLCL-RTLVEHSGRVFRLQFD-----EFQIVSSSHDDTILIW 292
Query: 295 D 295
D
Sbjct: 293 D 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.1 bits (84), Expect = 0.002
Identities = 7/43 (16%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 262 GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 304
+ C+ + + ++SG D +K+WD + + +
Sbjct: 13 ETSKGVYCLQYD-----DQKIVSGLRDNTIKIWDKNTLECKRI 50
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 44.1 bits (102), Expect = 1e-05
Identities = 38/314 (12%), Positives = 81/314 (25%), Gaps = 28/314 (8%)
Query: 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRS---KDVQLVTDVGNGPVTSLC 65
L+ H T + D + + G D + L+ K ++ +
Sbjct: 45 HELKEHNGQVTGVDWAPDS-NRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRW 103
Query: 66 FKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGG 125
+ + + S + W + + + +P S LA
Sbjct: 104 APNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF 163
Query: 126 DVKIIDIR------------------QHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENN 167
+I L + + + ++
Sbjct: 164 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDS 223
Query: 168 G----NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN-ISRSKS 222
+A + A + + +P + T V A D + +S +S
Sbjct: 224 TVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGR 283
Query: 223 TTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGE-RGKY 281
P + SQ R ++ S G H + S ++ G+ +
Sbjct: 284 LDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQ 343
Query: 282 LISGGNDKLVKVWD 295
+ G D + +WD
Sbjct: 344 FCTTGMDGGMSIWD 357
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 42.2 bits (97), Expect = 5e-05
Identities = 23/158 (14%), Positives = 50/158 (31%), Gaps = 4/158 (2%)
Query: 19 TCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVG--NGPVTSLCFKSGNEDIIYV 76
+C ++DR +A + + ++ V ++ NG VT + + + I+
Sbjct: 11 SCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69
Query: 77 SSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC 136
+ + + + +W+P + P A + I Q
Sbjct: 70 GTDRNAYVWTLKGR-TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 128
Query: 137 LYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCY 174
+ + I S+V + W P L +C
Sbjct: 129 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCR 166
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.1 bits (89), Expect = 5e-04
Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 239 RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSR 298
+ E+ I ++SG K + + + + H + V ++ +++ G D+ VW
Sbjct: 27 NNHEVHIYEKSGNKWVQV-HELKEHNGQVTGVDWA---PDSNRIVTCGTDRNAYVWTLKG 82
Query: 299 FQ 300
Sbjct: 83 RT 84
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.2 bits (100), Expect = 2e-05
Identities = 22/148 (14%), Positives = 50/148 (33%), Gaps = 22/148 (14%)
Query: 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQ------------L 52
+++ GHK + + +RD V S D + ++L++ + + +
Sbjct: 244 DSENESGTGHKDSVYSVVFTRDGQ-SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEV 302
Query: 53 VTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVC- 111
V S+ +E I+ S + V +D S PL ++ + +
Sbjct: 303 TYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK---SGNPLLMLQGHRNSVISVAVA 359
Query: 112 -----NPKSSFLACADDGGDVKIIDIRQ 134
P+ + A +I ++
Sbjct: 360 NGSSLGPEYNVFATGSGDCKARIWKYKK 387
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.6 bits (88), Expect = 8e-04
Identities = 39/342 (11%), Positives = 90/342 (26%), Gaps = 44/342 (12%)
Query: 46 RSKDVQLVTDVG-NGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKE 104
R DV+L + V + F S + + + K + + V + L + +
Sbjct: 49 REIDVELHKSLDHTSVVCCVKF-SNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANK 107
Query: 105 E---------------INQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSIC 149
+ I + +P FLA + ++I DI + L+ I
Sbjct: 108 DPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIY 167
Query: 150 SSVQFIPWKPWEGLPENNG-----NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG 204
S F + + + + K D
Sbjct: 168 SLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDR 227
Query: 205 VVDVINIESELNISRSKSTTKPLKGSQSTSK------------VNIRDAEMEILDQSGGK 252
V V + E+ + R S + G + + D +++ +
Sbjct: 228 AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN 287
Query: 253 RLHLDYSVGGHTAAASCVAFSM------FGERGKYLISGGNDKLVKVWDCSRFQGVQTSI 306
+ T + + + +Y++SG D+ V WD +
Sbjct: 288 NKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ 347
Query: 307 NNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348
+ + ++ + + +++
Sbjct: 348 GHRNSVISVAVANGSSLGPEYNV----FATGSGDCKARIWKY 385
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.8 bits (91), Expect = 3e-04
Identities = 35/297 (11%), Positives = 80/297 (26%), Gaps = 18/297 (6%)
Query: 11 LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLR--SKDVQLVTDVG-NGPVTSLCFK 67
+ K + + + + DG + + +K+V L+ + P+ F
Sbjct: 7 EQAPKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFI 65
Query: 68 SGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDV 127
+ IYV + + + + + N I +I +A + DG
Sbjct: 66 DNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIE 125
Query: 128 KIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDA 187
I +++ +S+ I G + +
Sbjct: 126 VIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNG 185
Query: 188 DMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD 247
+ + K + + + V D + + +
Sbjct: 186 TIEESGLKYQIRDV--------------ALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN 231
Query: 248 QSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 304
S T A V F R K+L + G+D ++ W+ + ++
Sbjct: 232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKN 288
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.5 bits (85), Expect = 0.002
Identities = 7/77 (9%), Positives = 17/77 (22%), Gaps = 9/77 (11%)
Query: 262 GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKV 321
S + L+ D + V+ N L++++ +
Sbjct: 9 APKDYISDIKII---PSKSLLLITSWDGSLTVYK------FDIQAKNVDLLQSLRYKHPL 59
Query: 322 NWLCTTPTESENLVVCD 338
+ V
Sbjct: 60 LCCNFIDNTDLQIYVGT 76
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.7 bits (88), Expect = 7e-04
Identities = 14/91 (15%), Positives = 27/91 (29%), Gaps = 8/91 (8%)
Query: 262 GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKV 321
H A V+ + +S D +KVWD + + + V
Sbjct: 12 AHDADIFSVSAC-----NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66
Query: 322 NWLCTTPTESEN---LVVCDTSKVVKVYSIS 349
+ L ++ + S + Y I+
Sbjct: 67 DVLQAIERDAFELCLVATTSFSGDLLFYRIT 97
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 38.2 bits (87), Expect = 0.001
Identities = 29/291 (9%), Positives = 77/291 (26%), Gaps = 20/291 (6%)
Query: 24 SRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVT-----SLCFKSGNEDIIYVSS 78
+ D + G I DL + ++ + P S + +Y +
Sbjct: 48 APDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATV 107
Query: 79 GKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLY 138
+ D ++ R + E + P + D +
Sbjct: 108 NPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYK 167
Query: 139 KSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV 198
++ G + + +G + + + +
Sbjct: 168 MDVKTGK---YTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPA 224
Query: 199 VAKGDGVVDVINIESELNISR-----SKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKR 253
A +++++ ++ ++ L+ + +++ + D K
Sbjct: 225 TADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKL 284
Query: 254 LHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT 304
+ CVAF ++G L GG + V++ + V+
Sbjct: 285 IK----AANLDHTYYCVAFD---KKGDKLYLGGTFNDLAVFNPDTLEKVKN 328
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 37.6 bits (85), Expect = 0.001
Identities = 31/262 (11%), Positives = 65/262 (24%), Gaps = 20/262 (7%)
Query: 59 GPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFL 118
G L + D I +G V + V E Y + + +P +
Sbjct: 18 GTAVVLGN-TPAGDKIQYCNGTSVYTVPVGSL---TDTEIYTEHSHQTTVAKTSPSGYYC 73
Query: 119 ACADDGGDVKIIDIR-QHCLYKSLRAGHSSICSSVQFIP---------------WKPWEG 162
A D G+V+I D + K+ S + + +
Sbjct: 74 ASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLF 133
Query: 163 LPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS 222
+ A P + + ++
Sbjct: 134 DTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVH 193
Query: 223 TTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYL 282
+ + + + G K + + A + V + G +
Sbjct: 194 SVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKI 253
Query: 283 ISGGNDKLVKVWDCSRFQGVQT 304
S DK +K+W+ + + +T
Sbjct: 254 ASASADKTIKIWNVATLKVEKT 275
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 36.7 bits (83), Expect = 0.003
Identities = 33/312 (10%), Positives = 72/312 (23%), Gaps = 24/312 (7%)
Query: 2 TDAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPV 61
A K + T + + A+ + + DL + + D+
Sbjct: 20 KMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE 79
Query: 62 -----TSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSS 116
+ + S ++ + + L + +
Sbjct: 80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR-RKAFEAPRQIT 138
Query: 117 FLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNP 176
LA A DG + + H + V+ P + WE + +N
Sbjct: 139 MLAWARDGSKLYGLGRDLHV-------MDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQ 191
Query: 177 AFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKV 236
+ K + +++E+ R S + +
Sbjct: 192 HESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPA 251
Query: 237 NIR----DAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVK 292
R +E D + + V S G + GG +
Sbjct: 252 KTRAFGAYNVLESFDLEKNASIK----RVPLPHSYYSVNVS---TDGSTVWLGGALGDLA 304
Query: 293 VWDCSRFQGVQT 304
+D +
Sbjct: 305 AYDAETLEKKGQ 316
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 349 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.97 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.97 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.97 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.97 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.97 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.95 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.94 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.94 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.94 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.93 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.92 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.9 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.89 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.88 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.87 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.86 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.85 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.84 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.83 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.78 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.77 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.7 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.65 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.53 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.53 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.53 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.5 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.49 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.46 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.43 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.32 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.27 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.25 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.25 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.24 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.17 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.12 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.08 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 99.05 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.01 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.87 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.85 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.83 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.77 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.64 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.62 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 98.29 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.22 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 98.1 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 98.1 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.98 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.67 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.54 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.51 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.19 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.17 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.17 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.17 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.03 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.94 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 96.81 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 96.71 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.68 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 96.67 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.55 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 96.47 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 96.4 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 95.85 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 95.4 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 94.86 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 94.56 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 94.52 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 93.89 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 93.35 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 92.92 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 87.9 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 86.47 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 86.38 | |
| d1wp5a_ | 323 | Topoisomerase IV subunit A, ParC, C-terminal domai | 85.98 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 85.66 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 84.37 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-44 Score=298.95 Aligned_cols=284 Identities=15% Similarity=0.184 Sum_probs=235.5
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcE-----EEEeecCCCCeEEEEEecCCCEEEEEeCCC
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV-----QLVTDVGNGPVTSLCFKSGNEDIIYVSSGK 80 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 80 (349)
+.++.| .|...|+|++|+|+ +++|++|+ ||.|+|||+.++.. ......|...|.+++|+|++++|++++.||
T Consensus 43 ~~~~~~-~H~~~V~~v~fs~~-g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg 119 (337)
T d1gxra_ 43 RQINTL-NHGEVVCAVTISNP-TRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS 119 (337)
T ss_dssp EEEEEE-CCSSCCCEEEECSS-SSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSS
T ss_pred eEEEEC-CCCCcEEEEEECCC-CCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccc
Confidence 445555 69999999999998 89999998 89999999976432 233456889999999999999999999999
Q ss_pred eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCC
Q 018858 81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPW 160 (349)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 160 (349)
.|++||+.... ......+..|...+.+++|+|++.++++++.++.|++||++++++..... .|...+.+++|++
T Consensus 120 ~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~-~~~~~v~~l~~s~---- 193 (337)
T d1gxra_ 120 TLSIWDLAAPT-PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ-GHTDGASCIDISN---- 193 (337)
T ss_dssp EEEEEECCCC---EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECT----
T ss_pred ccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc----
Confidence 99999987543 23445566677889999999999999999999999999999999888888 8899999999999
Q ss_pred CCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEE
Q 018858 161 EGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRD 240 (349)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (349)
++..+++++.|+.+++||+++++...... ....+.+++|+|+++.+
T Consensus 194 --------------------------------~~~~~~~~~~d~~v~i~d~~~~~~~~~~~--~~~~i~~l~~~~~~~~l 239 (337)
T d1gxra_ 194 --------------------------------DGTKLWTGGLDNTVRSWDLREGRQLQQHD--FTSQIFSLGYCPTGEWL 239 (337)
T ss_dssp --------------------------------TSSEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECTTSSEE
T ss_pred --------------------------------cccccccccccccccccccccceeecccc--cccceEEEEEccccccc
Confidence 78999999999999999999887665543 34678899999999999
Q ss_pred EEeeeeeecCc----eeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccc
Q 018858 241 AEMEILDQSGG----KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNIN 316 (349)
Q Consensus 241 ~~~~~~~~~~~----~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 316 (349)
++. ..++.+. .... ......|...|++++|+ |++++|++++.||.|++||+.++ ..+. ...
T Consensus 240 ~~~-~~d~~i~i~d~~~~~-~~~~~~~~~~i~~v~~s---~~g~~l~s~s~Dg~i~iwd~~~~---------~~~~-~~~ 304 (337)
T d1gxra_ 240 AVG-MESSNVEVLHVNKPD-KYQLHLHESCVLSLKFA---YCGKWFVSTGKDNLLNAWRTPYG---------ASIF-QSK 304 (337)
T ss_dssp EEE-ETTSCEEEEETTSSC-EEEECCCSSCEEEEEEC---TTSSEEEEEETTSEEEEEETTTC---------CEEE-EEE
T ss_pred cee-ccccccccccccccc-cccccccccccceEEEC---CCCCEEEEEeCCCeEEEEECCCC---------CEEE-Ecc
Confidence 853 2222211 1111 23456788999999999 89999999999999999999987 3332 345
Q ss_pred cccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 317 LNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 317 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
|...|.+++|+| ++++|++++.||.|+||||
T Consensus 305 ~~~~v~~~~~s~-d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 305 ESSSVLSCDISV-DDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp CSSCEEEEEECT-TSCEEEEEETTSCEEEEEE
T ss_pred CCCCEEEEEEeC-CCCEEEEEeCCCeEEEEEE
Confidence 788999999988 8889999999999999996
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=5.7e-44 Score=291.78 Aligned_cols=287 Identities=16% Similarity=0.183 Sum_probs=244.3
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
..+.++|+||+++|++++|+|+ +++|+||+.||+|++||+++++.+.++.+|...|.+++|+|++.+++++..++.+.+
T Consensus 7 ~~~~~~L~GH~~~I~~l~~sp~-~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~ 85 (317)
T d1vyhc1 7 PPEKYALSGHRSPVTRVIFHPV-FSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKL 85 (317)
T ss_dssp SSCSCEEECCSSCEEEEEECSS-SSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCE
T ss_pred CCccEEEcCCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccc
Confidence 3567789999999999999998 899999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCC
Q 018858 85 FDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLP 164 (349)
Q Consensus 85 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 164 (349)
|+.... .....+..+...+.++.++|+++.+++++.|+.+++||+++++.+..+. .|...+.+++|+|
T Consensus 86 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-------- 153 (317)
T d1vyhc1 86 WDFQGF---ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT-GHREWVRMVRPNQ-------- 153 (317)
T ss_dssp EETTSS---CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECT--------
T ss_pred cccccc---ccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEc-cCCCcceeeeccc--------
Confidence 998764 3334455677889999999999999999999999999999999999998 8999999999999
Q ss_pred CCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeecccc------
Q 018858 165 ENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNI------ 238 (349)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 238 (349)
++.+|++++.|+.|++|++++......... ....+..+.++|++.
T Consensus 154 ----------------------------~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~ 204 (317)
T d1vyhc1 154 ----------------------------DGTLIASCSNDQTVRVWVVATKECKAELRE-HRHVVECISWAPESSYSSISE 204 (317)
T ss_dssp ----------------------------TSSEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECCSCGGGGGGG
T ss_pred ----------------------------CCCEEEEEeCCCeEEEEeeccceeeEEEec-CCCCceEEEEeeccccceeec
Confidence 789999999999999999998766554432 233455555555432
Q ss_pred --------------EEEEeeeeeec----CceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCc
Q 018858 239 --------------RDAEMEILDQS----GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ 300 (349)
Q Consensus 239 --------------~~~~~~~~~~~----~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 300 (349)
.++ .+..++. ......++..+.+|...|.++.++ |++++|++|+.||.|++||++++
T Consensus 205 ~~~~~~~~~~~~~~~~~-~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~s~~~dg~i~iwd~~~~- 279 (317)
T d1vyhc1 205 ATGSETKKSGKPGPFLL-SGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH---SGGKFILSCADDKTLRVWDYKNK- 279 (317)
T ss_dssp CCSCC-------CCEEE-EEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC---SSSSCEEEEETTTEEEEECCTTS-
T ss_pred cccceeeeeccCCceeE-eccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEC---CCCCEEEEEECCCeEEEEECCCC-
Confidence 333 2222222 122345667788999999999999 89999999999999999999987
Q ss_pred ceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 301 GVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
+++..+.+|...|++++|+| ++++|++++.||+|+|||
T Consensus 280 --------~~~~~~~~h~~~V~~~~~s~-~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 280 --------RCMKTLNAHEHFVTSLDFHK-TAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp --------CCCEEEECCSSCEEEEEECS-SSSCEEEEETTSEEEEEC
T ss_pred --------cEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCeEEEeC
Confidence 66777889999999999988 888999999999999997
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=4.7e-43 Score=289.63 Aligned_cols=254 Identities=15% Similarity=0.258 Sum_probs=218.7
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
.+..++|+||+++|++++|+|+ +++|+||+.||+|++||+.+++.+..+..|..+|.+++|+|+++++++++.|+.+.+
T Consensus 45 ~~~~~tL~GH~~~I~~l~~s~~-~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~ 123 (340)
T d1tbga_ 45 MRTRRTLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTT-SSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred eeeeEEECCCCCCEEEEEECCC-CCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeec
Confidence 4567889999999999999998 899999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCccc-ceee-----------------------------------------ccCcccceEEEEEccCCCEEEEEc
Q 018858 85 FDVHMPASWR-PLES-----------------------------------------YNYNKEEINQIVCNPKSSFLACAD 122 (349)
Q Consensus 85 wd~~~~~~~~-~~~~-----------------------------------------~~~~~~~v~~~~~~~~~~~l~~~~ 122 (349)
|+........ .... ...+...+....+.+...++++++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (340)
T d1tbga_ 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGA 203 (340)
T ss_dssp EESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred ccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEee
Confidence 9976432110 0000 111223456677788888999999
Q ss_pred CCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcC
Q 018858 123 DGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG 202 (349)
Q Consensus 123 ~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (349)
.|+.|++||+++++++..+. +|...|.+++|+| ++++|++|+.
T Consensus 204 ~d~~v~i~d~~~~~~~~~~~-~h~~~i~~v~~~p------------------------------------~~~~l~s~s~ 246 (340)
T d1tbga_ 204 CDASAKLWDVREGMCRQTFT-GHESDINAICFFP------------------------------------NGNAFATGSD 246 (340)
T ss_dssp TTTEEEEEETTTTEEEEEEC-CCSSCEEEEEECT------------------------------------TSSEEEEEET
T ss_pred cCceEEEEECCCCcEEEEEe-CCCCCeEEEEECC------------------------------------CCCEEEEEeC
Confidence 99999999999999999999 8999999999999 7899999999
Q ss_pred CCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEE
Q 018858 203 DGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYL 282 (349)
Q Consensus 203 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l 282 (349)
||.|++||++.... ........+...|.++.|+ |++++|
T Consensus 247 d~~i~~~~~~~~~~--------------------------------------~~~~~~~~~~~~i~~~~~s---~~~~~l 285 (340)
T d1tbga_ 247 DATCRLFDLRADQE--------------------------------------LMTYSHDNIICGITSVSFS---KSGRLL 285 (340)
T ss_dssp TSCEEEEETTTTEE--------------------------------------EEEECCTTCCSCEEEEEEC---SSSCEE
T ss_pred CCeEEEEeeccccc--------------------------------------ccccccccccCceEEEEEC---CCCCEE
Confidence 99999999987421 1112334566789999999 899999
Q ss_pred EEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 283 ISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 283 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
++|+.||.|++||+.++ ..+..+.+|.+.|++++|+| ++++|++|+.||.|+|||
T Consensus 286 ~~g~~dg~i~iwd~~~~---------~~~~~~~~H~~~V~~l~~s~-d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 286 LAGYDDFNCNVWDALKA---------DRAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEETTSCEEEEETTTC---------CEEEEECCCSSCEEEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred EEEECCCEEEEEECCCC---------cEEEEEcCCCCCEEEEEEeC-CCCEEEEEccCCEEEEeC
Confidence 99999999999999987 67778889999999999988 888999999999999997
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=5.9e-43 Score=285.27 Aligned_cols=257 Identities=16% Similarity=0.205 Sum_probs=214.8
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcE--EEEeecCCCCeEEEEEecCCCEEEEEeCC--
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV--QLVTDVGNGPVTSLCFKSGNEDIIYVSSG-- 79 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-- 79 (349)
+++..+.+.+|.+.|+|++|+|+ +++|++|+.||.|++||+.+++. ...+..|..+|.+++|+|++++|++++.+
T Consensus 47 ~~~~~~~~~~H~~~v~~~~~sp~-g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~ 125 (311)
T d1nr0a1 47 SLTDTEIYTEHSHQTTVAKTSPS-GYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRE 125 (311)
T ss_dssp CSSCCEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSS
T ss_pred CCceeEEEcCCCCCEEEEEEeCC-CCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccccccc
Confidence 46778889999999999999998 89999999999999999988764 35678899999999999999999999864
Q ss_pred CeEEEEEccCCCcccceeeccCcccceEEEEEccCCCE-EEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCC
Q 018858 80 KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSF-LACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWK 158 (349)
Q Consensus 80 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 158 (349)
..+++|++++++. ...+.+|...|++++|+|++++ |++|+.|+.|++||+++++....+. .|...|.++.|+|
T Consensus 126 ~~~~v~~~~~~~~---~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~-~~~~~i~~v~~~p-- 199 (311)
T d1nr0a1 126 RFGHVFLFDTGTS---NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG-EHTKFVHSVRYNP-- 199 (311)
T ss_dssp CSEEEEETTTCCB---CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC-CCSSCEEEEEECT--
T ss_pred ccccccccccccc---cccccccccccccccccccceeeecccccccccccccccccccccccc-cccccccccccCc--
Confidence 5699999987643 3456678889999999999875 7889999999999999999999888 8999999999999
Q ss_pred CCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeecccc
Q 018858 159 PWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNI 238 (349)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (349)
+++++++++.|+.|++||++.+.....+..
T Consensus 200 ----------------------------------~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~---------------- 229 (311)
T d1nr0a1 200 ----------------------------------DGSLFASTGGDGTIVLYNGVDGTKTGVFED---------------- 229 (311)
T ss_dssp ----------------------------------TSSEEEEEETTSCEEEEETTTCCEEEECBC----------------
T ss_pred ----------------------------------cccccccccccccccccccccccccccccc----------------
Confidence 799999999999999999987543322211
Q ss_pred EEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccc
Q 018858 239 RDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLN 318 (349)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 318 (349)
......+|...|++++|+ |++++|++|+.||.|+|||++++ +++..+..|.
T Consensus 230 -----------------~~~~~~~h~~~V~~~~~s---~~~~~l~tgs~Dg~v~iwd~~t~---------~~~~~l~~~~ 280 (311)
T d1nr0a1 230 -----------------DSLKNVAHSGSVFGLTWS---PDGTKIASASADKTIKIWNVATL---------KVEKTIPVGT 280 (311)
T ss_dssp -----------------TTSSSCSSSSCEEEEEEC---TTSSEEEEEETTSEEEEEETTTT---------EEEEEEECCS
T ss_pred -----------------cccccccccccccccccC---CCCCEEEEEeCCCeEEEEECCCC---------cEEEEEECCC
Confidence 112345789999999999 89999999999999999999987 4554444433
Q ss_pred ---cceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 319 ---KKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 319 ---~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
..+.++.| +++.|++++.||.|++||++
T Consensus 281 ~~~~~~~~~~~---~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 281 RIEDQQLGIIW---TKQALVSISANGFINFVNPE 311 (311)
T ss_dssp SGGGCEEEEEE---CSSCEEEEETTCCEEEEETT
T ss_pred CccceEEEEEe---cCCEEEEEECCCEEEEEeCC
Confidence 33445555 44589999999999999974
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=3.3e-42 Score=279.83 Aligned_cols=290 Identities=17% Similarity=0.122 Sum_probs=222.6
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEee-cCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD-VGNGPVTSLCFKSGNEDIIYVSSGKEVK 83 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 83 (349)
|+..+.++||.+.|++++|+|+ +++|++|+.||.|++||+++++.+..+. .|...|.+++|+|+++ +++++.|+.++
T Consensus 2 g~~~~~~~GH~~~V~~l~~s~d-g~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~ 79 (299)
T d1nr0a2 2 GSIDQVRYGHNKAITALSSSAD-GKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLK 79 (299)
T ss_dssp TEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEE
T ss_pred CccceEcCCCCCCcEEEEECCC-CCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEE
Confidence 4567899999999999999998 8999999999999999999999888774 6899999999999987 55667799999
Q ss_pred EEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCC
Q 018858 84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
+|+...............+...+.+++++|+++++++++. +.+++|+... ... .. ....+.+++|+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~-~~i~~~~~~~--~~~-~~--~~~~~~~~~~s~------- 146 (299)
T d1nr0a2 80 VVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACY-KHIAIYSHGK--LTE-VP--ISYNSSCVALSN------- 146 (299)
T ss_dssp EECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEES-SEEEEEETTE--EEE-EE--CSSCEEEEEECT-------
T ss_pred EeccCCcccccccccccccccccccccccccccccccccc-cccccccccc--ccc-cc--cccccccccccc-------
Confidence 9998754322222222334577899999999988777654 6899998543 222 22 334578889998
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
++++|++|+.||.|++||+++.+............+.+++|+|+++++++.
T Consensus 147 -----------------------------~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 197 (299)
T d1nr0a2 147 -----------------------------DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVAT 197 (299)
T ss_dssp -----------------------------TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred -----------------------------ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 789999999999999999998765554444456788999999999999853
Q ss_pred ee------eeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecccc
Q 018858 244 EI------LDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINL 317 (349)
Q Consensus 244 ~~------~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 317 (349)
+. ++............+.+|...|++++|+ |++++|++|+.|+.|++||+++.... ........+
T Consensus 198 ~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s---~~~~~l~sgs~dg~i~iwd~~~~~~~------~~~~~~~~~ 268 (299)
T d1nr0a2 198 DQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWS---PDNVRLATGSLDNSVIVWNMNKPSDH------PIIIKGAHA 268 (299)
T ss_dssp ETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEEC---TTSSEEEEEETTSCEEEEETTCTTSC------CEEETTSST
T ss_pred cccccccccccccccccccccccccccccccccccc---ccccceEEEcCCCEEEEEECCCCCcc------eEEEecCCC
Confidence 21 2222222334445677899999999999 89999999999999999999886431 222222334
Q ss_pred ccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 318 NKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 318 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
...+..+++ + ++++|++++.|+.|++||++
T Consensus 269 ~~~v~~~~~-~-~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 269 MSSVNSVIW-L-NETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp TSCEEEEEE-E-ETTEEEEEETTSCEEEEECC
T ss_pred CCcEEEEEE-C-CCCEEEEEeCCCEEEEEecc
Confidence 456666655 5 45689999999999999986
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.6e-42 Score=288.61 Aligned_cols=283 Identities=16% Similarity=0.171 Sum_probs=231.1
Q ss_pred eCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEee------------------cCCCCeEEEEEecCCCEE
Q 018858 12 RGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTD------------------VGNGPVTSLCFKSGNEDI 73 (349)
Q Consensus 12 ~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~------------------~~~~~v~~~~~~~~~~~l 73 (349)
.+|++.|+|++|+|+ +++|++|+ |+.|++||+.+++.+..+. .|...|.+++|+|++++|
T Consensus 59 ~~H~~~V~~l~fs~d-g~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l 136 (388)
T d1erja_ 59 LDHTSVVCCVKFSND-GEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 136 (388)
T ss_dssp EECSSCCCEEEECTT-SSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred CCCCCcEEEEEECCC-CCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcc
Confidence 369999999999998 89999987 8999999999988766553 356679999999999999
Q ss_pred EEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEE
Q 018858 74 IYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQ 153 (349)
Q Consensus 74 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~ 153 (349)
++|+.||.|++||...+ +.+....+|...|.++++++++..+++++.++.+++||.++........ +.....++.
T Consensus 137 ~s~~~dg~v~i~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~~~ 211 (388)
T d1erja_ 137 ATGAEDRLIRIWDIENR---KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS--IEDGVTTVA 211 (388)
T ss_dssp EEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEE
T ss_pred eeccccccccccccccc---ccccccccccccccccccccccccccccccceeeeeeeccccccccccc--ccccccccc
Confidence 99999999999999865 4445566788999999999999999999999999999999888777666 344455566
Q ss_pred EccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCC------CCCCc
Q 018858 154 FIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKS------TTKPL 227 (349)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~~~~ 227 (349)
+.+. ++++|++++.||.|++||.+++........ .....
T Consensus 212 ~~~~-----------------------------------~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~ 256 (388)
T d1erja_ 212 VSPG-----------------------------------DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDS 256 (388)
T ss_dssp ECST-----------------------------------TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSC
T ss_pred ccCC-----------------------------------CCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCC
Confidence 6653 789999999999999999998766554332 23467
Q ss_pred cceeeeeccccEEEEeeeeeecCc----------------eeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeE
Q 018858 228 KGSQSTSKVNIRDAEMEILDQSGG----------------KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLV 291 (349)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i 291 (349)
+..++|+|+++++++.+ .++.+. ...........|...|.+++|+ |++++|++|+.||.|
T Consensus 257 v~~l~~s~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---~~~~~l~sg~~dg~i 332 (388)
T d1erja_ 257 VYSVVFTRDGQSVVSGS-LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT---QNDEYILSGSKDRGV 332 (388)
T ss_dssp EEEEEECTTSSEEEEEE-TTSEEEEEEC---------------CEEEEEECCSSCEEEEEEC---GGGCEEEEEETTSEE
T ss_pred EEEEEECCCCCEEEEEE-CCCcEEEEeccCCccccccccccccceeeecccccceEEEEEEC---CCCCEEEEEeCCCEE
Confidence 88999999999998532 222110 0122334556788999999999 899999999999999
Q ss_pred EEEecCCCcceecccccceeeeccccccceEEEEeec-----CCCCcEEEeeCCCeEEEeeCC
Q 018858 292 KVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP-----TESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 292 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~l~~~~~dg~i~iw~~~ 349 (349)
++||++++ +.+..+.+|.+.|.++++.+ +++.+|++|+.||+|+||+++
T Consensus 333 ~vwd~~~~---------~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 333 LFWDKKSG---------NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp EEEETTTC---------CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred EEEECCCC---------cEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 99999998 67778889999999998642 377899999999999999974
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.6e-40 Score=269.54 Aligned_cols=250 Identities=13% Similarity=0.120 Sum_probs=211.4
Q ss_pred CceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcc
Q 018858 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASW 93 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 93 (349)
+.+.+.+++++|+ ++.|+.++ ++.+.+||+++++....+.+|...|++++|+|+|++|++|+.||.|++||+.+++..
T Consensus 16 ~r~~~~~~a~~~~-g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~ 93 (311)
T d1nr0a1 16 ARGTAVVLGNTPA-GDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI 93 (311)
T ss_dssp CTTCCCCCEECTT-SSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC
T ss_pred CCCCeEEEEEcCC-CCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccc
Confidence 4456677899998 78888775 567999999999888889999999999999999999999999999999999876432
Q ss_pred cceeeccCcccceEEEEEccCCCEEEEEcC--CCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCc
Q 018858 94 RPLESYNYNKEEINQIVCNPKSSFLACADD--GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAG 171 (349)
Q Consensus 94 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 171 (349)
....+..|...|.+++|+|++++|++++. +..+++|++++++....+. +|...|.+++|+|
T Consensus 94 -~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~-~h~~~v~~v~~~~--------------- 156 (311)
T d1nr0a1 94 -LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLT-GQARAMNSVDFKP--------------- 156 (311)
T ss_dssp -EEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCC-CCSSCEEEEEECS---------------
T ss_pred -cccccccccCcccccccccccccccccccccccccccccccccccccccc-ccccccccccccc---------------
Confidence 22345667889999999999999998875 4569999999999888888 8999999999999
Q ss_pred cccCCceeEEeecCcccccCCCCc-EEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecC
Q 018858 172 QCYNPAFVHAIAIPDADMLDKTNK-ICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG 250 (349)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (349)
+++ .|++|+.||.|++||+++.
T Consensus 157 ---------------------~~~~~l~sgs~d~~i~i~d~~~~------------------------------------ 179 (311)
T d1nr0a1 157 ---------------------SRPFRIISGSDDNTVAIFEGPPF------------------------------------ 179 (311)
T ss_dssp ---------------------SSSCEEEEEETTSCEEEEETTTB------------------------------------
T ss_pred ---------------------cceeeeccccccccccccccccc------------------------------------
Confidence 555 5888999999999999974
Q ss_pred ceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCC
Q 018858 251 GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTE 330 (349)
Q Consensus 251 ~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 330 (349)
+....+.+|...|+++.++ |+++++++++.|+.|++||+.++....... .......+|...|++++|+| +
T Consensus 180 ----~~~~~~~~~~~~i~~v~~~---p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~--~~~~~~~~h~~~V~~~~~s~-~ 249 (311)
T d1nr0a1 180 ----KFKSTFGEHTKFVHSVRYN---PDGSLFASTGGDGTIVLYNGVDGTKTGVFE--DDSLKNVAHSGSVFGLTWSP-D 249 (311)
T ss_dssp ----EEEEEECCCSSCEEEEEEC---TTSSEEEEEETTSCEEEEETTTCCEEEECB--CTTSSSCSSSSCEEEEEECT-T
T ss_pred ----ccccccccccccccccccC---cccccccccccccccccccccccccccccc--ccccccccccccccccccCC-C
Confidence 4556677899999999999 899999999999999999999875432211 11123457899999999988 8
Q ss_pred CCcEEEeeCCCeEEEeeCC
Q 018858 331 SENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 331 ~~~l~~~~~dg~i~iw~~~ 349 (349)
+++|++++.||.|+|||++
T Consensus 250 ~~~l~tgs~Dg~v~iwd~~ 268 (311)
T d1nr0a1 250 GTKIASASADKTIKIWNVA 268 (311)
T ss_dssp SSEEEEEETTSEEEEEETT
T ss_pred CCEEEEEeCCCeEEEEECC
Confidence 8899999999999999974
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=6.6e-40 Score=274.22 Aligned_cols=291 Identities=10% Similarity=0.049 Sum_probs=220.2
Q ss_pred CceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc--EEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCC
Q 018858 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD--VQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPA 91 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 91 (349)
+.++|+|++|+|+ +++||+|+.||.|++||..+++ .+..+++|..+|.+++|+|++++|++++.|+.|++||++++.
T Consensus 6 ~~~pIt~~~~s~d-g~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~ 84 (371)
T d1k8kc_ 6 LVEPISCHAWNKD-RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT 84 (371)
T ss_dssp CSSCCCEEEECTT-SSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE
T ss_pred CCCCeEEEEECCC-CCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccc
Confidence 4578999999998 8999999999999999998775 567788999999999999999999999999999999998653
Q ss_pred cccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceE----eceeccccccceeEEEEccCCCCCCCCCCC
Q 018858 92 SWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCL----YKSLRAGHSSICSSVQFIPWKPWEGLPENN 167 (349)
Q Consensus 92 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 167 (349)
. .....+..|...|++++|+|++++|++++.|+.|++|++..... ..... .|...|.+++|+|
T Consensus 85 ~-~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~-~~~~~v~~v~~~p----------- 151 (371)
T d1k8kc_ 85 W-KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKK-PIRSTVLSLDWHP----------- 151 (371)
T ss_dssp E-EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECT-TCCSCEEEEEECT-----------
T ss_pred c-ccccccccccccccccccccccccceeecccCcceeeeeeccccccccccccc-ccccccccccccc-----------
Confidence 2 33344556778999999999999999999999999999875432 22334 6788899999999
Q ss_pred CCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceee-----------------eecCCCCCCccce
Q 018858 168 GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNI-----------------SRSKSTTKPLKGS 230 (349)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----------------~~~~~~~~~~~~~ 230 (349)
++++|++|+.|+.|++|+....... ..........+..
T Consensus 152 -------------------------~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 206 (371)
T d1k8kc_ 152 -------------------------NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHG 206 (371)
T ss_dssp -------------------------TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEE
T ss_pred -------------------------cccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEE
Confidence 7999999999999999998753211 1111223456788
Q ss_pred eeeeccccEEEEeeeeeec----CceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecc-
Q 018858 231 QSTSKVNIRDAEMEILDQS----GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTS- 305 (349)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~- 305 (349)
++|+|+++.+++.+ .|+. .......+..+..|..+|.+++|+ |++++|++|+ |+.+++|...........
T Consensus 207 ~~~s~~g~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs---~d~~~la~g~-d~~~~~~~~~~~~~~~~~~ 281 (371)
T d1k8kc_ 207 VCFSANGSRVAWVS-HDSTVCLADADKKMAVATLASETLPLLAVTFI---TESSLVAAGH-DCFPVLFTYDSAAGKLSFG 281 (371)
T ss_dssp EEECSSSSEEEEEE-TTTEEEEEEGGGTTEEEEEECSSCCEEEEEEE---ETTEEEEEET-TSSCEEEEEETTTTEEEEC
T ss_pred EEeecccccccccc-cCCcceEEeeecccceeeeecccccceeeeec---CCCCEEEEEc-CCceEEEEeeCCCceEEEe
Confidence 99999999988533 2322 222345566778899999999999 8998887665 777777665432211000
Q ss_pred -------------------------------cccceeeeccccccceEEEEeecCCC---CcEEEeeCCCeEEEeeC
Q 018858 306 -------------------------------INNDLLIKNINLNKKVNWLCTTPTES---ENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 306 -------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~---~~l~~~~~dg~i~iw~~ 348 (349)
...........|.+.|+++++.+... ..++|++.||.|++||+
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~ 358 (371)
T d1k8kc_ 282 GRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 358 (371)
T ss_dssp CCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred eeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeC
Confidence 00001111224888999999987432 24889999999999996
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.3e-37 Score=250.56 Aligned_cols=256 Identities=13% Similarity=0.140 Sum_probs=198.9
Q ss_pred CCCeeeeCCc-eeeeEEEEecC-CCceEEEeCCCCcEEEEECCCCcE--------EEEeecCCCCeEEEEEecCCCEEEE
Q 018858 6 AKPRRLRGHK-ATATCCIASRD-RPGFVASSGEDGCICWFDLRSKDV--------QLVTDVGNGPVTSLCFKSGNEDIIY 75 (349)
Q Consensus 6 ~~~~~l~~h~-~~i~~~~~~~~-~~~~l~t~~~dg~i~vwd~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~l~~ 75 (349)
..+..+.+|. ..|++++|+|+ ++.+|++|+.||+|++||+..++. ...+..|..+|.+++|+++++++++
T Consensus 53 ~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 132 (325)
T d1pgua1 53 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV 132 (325)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred cceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccce
Confidence 4566777874 68999999984 468999999999999999865432 2345568899999999999999988
Q ss_pred EeC--CCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCE-EEEEcCCCcEEEEEcCCceEeceec--ccccccee
Q 018858 76 VSS--GKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSF-LACADDGGDVKIIDIRQHCLYKSLR--AGHSSICS 150 (349)
Q Consensus 76 ~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~v~ 150 (349)
++. ++.+.+|+.++++ .+..+.+|...+.+++|+|++.+ +++++.|+.+++||++..+....+. ..+...|.
T Consensus 133 ~~~~~~~~~~~~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~ 209 (325)
T d1pgua1 133 VGEGRDNFGVFISWDSGN---SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVR 209 (325)
T ss_dssp EECCSSCSEEEEETTTCC---EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEE
T ss_pred eeccccceEEEEeecccc---cceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccE
Confidence 765 5689999998763 45556778899999999998865 6789999999999998776655443 15677899
Q ss_pred EEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccce
Q 018858 151 SVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGS 230 (349)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 230 (349)
+++|+|+ .+.+|++++.||.|++||++++
T Consensus 210 ~v~~~pd-----------------------------------~~~~l~s~~~d~~i~iwd~~~~---------------- 238 (325)
T d1pgua1 210 DVEFSPD-----------------------------------SGEFVITVGSDRKISCFDGKSG---------------- 238 (325)
T ss_dssp EEEECST-----------------------------------TCCEEEEEETTCCEEEEETTTC----------------
T ss_pred Eeeeccc-----------------------------------cceeccccccccceeeeeeccc----------------
Confidence 9999994 4789999999999999999875
Q ss_pred eeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccce
Q 018858 231 QSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDL 310 (349)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~ 310 (349)
+.+..+.+|...+..+.|++..+++++|++++.|+.|+|||++++ +.
T Consensus 239 ------------------------~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~---------~~ 285 (325)
T d1pgua1 239 ------------------------EFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTS---------KC 285 (325)
T ss_dssp ------------------------CEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTT---------EE
T ss_pred ------------------------cccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCC---------CE
Confidence 445566677766655555432268999999999999999999987 44
Q ss_pred eeeccc--cccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 311 LIKNIN--LNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 311 ~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
+..+.. +...+..+++.+..+.+|++++.||.|++|||
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 286 VQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred EEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 444443 33344455554434458999999999999997
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-35 Score=244.17 Aligned_cols=289 Identities=16% Similarity=0.134 Sum_probs=211.7
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK 83 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 83 (349)
+.++.+.|+||++.|.+ +++++ +++|+||+.||+|+|||+.+++++.++.+|...|.+++|+|+ +|++++.|+.++
T Consensus 5 ~~~~~~~l~GH~~~V~s-~~~~~-g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~ 80 (342)
T d2ovrb2 5 ELKSPKVLKGHDDHVIT-CLQFC-GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLK 80 (342)
T ss_dssp CCCCCEEEECSTTSCEE-EEEEE-TTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEE
T ss_pred CCCcCEEECCcCCceEE-EEEEC-CCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceeccccc
Confidence 45678899999999865 46666 789999999999999999999999999999999999999864 899999999999
Q ss_pred EEEccCCCcccceeecc--------------------------Cc---------ccceEEEEEccCCCEEEEEcCCCcEE
Q 018858 84 SFDVHMPASWRPLESYN--------------------------YN---------KEEINQIVCNPKSSFLACADDGGDVK 128 (349)
Q Consensus 84 iwd~~~~~~~~~~~~~~--------------------------~~---------~~~v~~~~~~~~~~~l~~~~~dg~i~ 128 (349)
+|+.............. .. ..........+....+++++.++.|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 160 (342)
T d2ovrb2 81 VWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVK 160 (342)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEE
T ss_pred ccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEE
Confidence 99987532111000000 00 00011122334456788899999999
Q ss_pred EEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEE
Q 018858 129 IIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDV 208 (349)
Q Consensus 129 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 208 (349)
+||.+..+.+..+. +|...+..+.+.+ .++++++.||.|++
T Consensus 161 ~~d~~~~~~~~~~~-~~~~~~~~~~~~~--------------------------------------~~l~s~~~dg~i~~ 201 (342)
T d2ovrb2 161 VWDPETETCLHTLQ-GHTNRVYSLQFDG--------------------------------------IHVVSGSLDTSIRV 201 (342)
T ss_dssp EEEGGGTEEEEEEC-CCSSCEEEEEECS--------------------------------------SEEEEEETTSCEEE
T ss_pred EeecccceeeEEEc-CcccccccccCCC--------------------------------------CEEEEEeCCCeEEE
Confidence 99999999999999 8999999999999 47999999999999
Q ss_pred EEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecC-------ceeeeeeeeecCCCcceEEEEEeeecCCccE
Q 018858 209 INIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG-------GKRLHLDYSVGGHTAAASCVAFSMFGERGKY 281 (349)
Q Consensus 209 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~ 281 (349)
||++..+.......+ ...+..+ +++++++++ +..++.+ ......+.....|...+.++.++ +++
T Consensus 202 ~d~~~~~~~~~~~~~-~~~v~~~--~~~~~~l~s-~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 272 (342)
T d2ovrb2 202 WDVETGNCIHTLTGH-QSLTSGM--ELKDNILVS-GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN-----KNF 272 (342)
T ss_dssp EETTTCCEEEEECCC-CSCEEEE--EEETTEEEE-EETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC-----SSE
T ss_pred eecccceeeeEeccc-ccceeEE--ecCCCEEEE-EcCCCEEEEEecccccccccccccceeeeceeecccC-----CCe
Confidence 999998776655443 2334444 445566664 3333322 12222333334566677777654 569
Q ss_pred EEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCe----EEEeeCC
Q 018858 282 LISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKV----VKVYSIS 349 (349)
Q Consensus 282 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~----i~iw~~~ 349 (349)
+++|+.||.|++||+++++.+.. -......+|...|++++|+| ++.+|++|+.||+ |++||+.
T Consensus 273 ~~s~s~Dg~i~iwd~~tg~~i~~----~~~~~~~~~~~~v~~v~~s~-~~~~la~g~~dGt~~~~l~~~Df~ 339 (342)
T d2ovrb2 273 VITSSDDGTVKLWDLKTGEFIRN----LVTLESGGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLDFD 339 (342)
T ss_dssp EEEEETTSEEEEEETTTCCEEEE----EEECTTGGGTCEEEEEEECS-SEEEEEEECSSSSSCCEEEEEECC
T ss_pred eEEEcCCCEEEEEECCCCCEEEE----EecccCCCCCCCEEEEEECC-CCCEEEEEeCCCCCeeEEEEEeCC
Confidence 99999999999999999853321 00111245888999999988 7889999998885 9999974
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.8e-35 Score=238.45 Aligned_cols=249 Identities=17% Similarity=0.241 Sum_probs=182.6
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
.+.++.+..|...|+|++| + +++|+||+.||+|+|||+++++++.++.+|..+|.+++| ++++|++|+.|+.|++
T Consensus 5 ~~~i~~~~~~~~~V~c~~~--d-~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~ 79 (293)
T d1p22a2 5 LQRIHCRSETSKGVYCLQY--D-DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRV 79 (293)
T ss_dssp CCCEECCCSSCCCEEEEEC--C-SSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEE
T ss_pred EEEEeccCCCCCCEEEEEE--c-CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccc
Confidence 3455666788899998765 5 789999999999999999999999999999999999887 5789999999999999
Q ss_pred EEccCCCcccce----------------------------------------eeccCcccceEEEEEccCCCEEEEEcCC
Q 018858 85 FDVHMPASWRPL----------------------------------------ESYNYNKEEINQIVCNPKSSFLACADDG 124 (349)
Q Consensus 85 wd~~~~~~~~~~----------------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d 124 (349)
|++..+...... ..+..|...+..+.+. ...+++++.|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d 157 (293)
T d1p22a2 80 WDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGD 157 (293)
T ss_dssp EESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETT
T ss_pred cccccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceec--ccccccccCC
Confidence 999765321111 0111222333333332 3356666677
Q ss_pred CcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCC
Q 018858 125 GDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG 204 (349)
Q Consensus 125 g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 204 (349)
+.|++||+++++.+..+. ++...+..+.++ +..+++++.||
T Consensus 158 ~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~--------------------------------------~~~l~~~~~dg 198 (293)
T d1p22a2 158 RTIKVWNTSTCEFVRTLN-GHKRGIACLQYR--------------------------------------DRLVVSGSSDN 198 (293)
T ss_dssp SEEEEEETTTCCEEEEEE-CCSSCEEEEEEE--------------------------------------TTEEEEEETTS
T ss_pred CceeeecCCCCcEEEEEc-ccccccccccCC--------------------------------------CCeEEEecCCC
Confidence 777777777777666666 566566555553 35677777777
Q ss_pred eEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEE
Q 018858 205 VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLIS 284 (349)
Q Consensus 205 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s 284 (349)
.|++||+++. ..+....+|...+..+ + +++.+|++
T Consensus 199 ~i~i~d~~~~----------------------------------------~~~~~~~~~~~~v~~~--~---~~~~~l~s 233 (293)
T d1p22a2 199 TIRLWDIECG----------------------------------------ACLRVLEGHEELVRCI--R---FDNKRIVS 233 (293)
T ss_dssp CEEEEETTTC----------------------------------------CEEEEECCCSSCEEEE--E---CCSSEEEE
T ss_pred EEEEEecccc----------------------------------------eeeeeecccceeeeec--c---ccceEEEE
Confidence 7777777753 4445666777777654 4 67889999
Q ss_pred eeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 285 GGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 285 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
++.||.|++||+..............+..+.+|.+.|++++|+ +++|++++.||+|++||
T Consensus 234 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d---~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 234 GAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD---EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp EETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC---SSCEEECCSSSEEEEEC
T ss_pred EcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc---CCEEEEEecCCEEEEeC
Confidence 9999999999987654333222335667788999999999984 45899999999999997
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=6.2e-36 Score=241.15 Aligned_cols=248 Identities=12% Similarity=0.095 Sum_probs=187.5
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
.+++++|+||.++|++++|+| |+||+.||+|++||+.++ ...|...|.++++++++ .+++++.|+++++
T Consensus 3 ~~~i~~l~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~ 71 (287)
T d1pgua2 3 DEVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKV 71 (287)
T ss_dssp EEEEEEECCCSSCEEEEETTT-----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCSTT-CCEEEETTTEEEE
T ss_pred cceeEEECCCCCceEEEEECc-----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCCC-eEEEEeecccccc
Confidence 578899999999999999975 899999999999998753 35789999999998754 5789999999999
Q ss_pred EEccCCCccc---ce-----------------eeccCc--------ccceEEEEEccCCCEEEEEcCCC-cEEEEEcCCc
Q 018858 85 FDVHMPASWR---PL-----------------ESYNYN--------KEEINQIVCNPKSSFLACADDGG-DVKIIDIRQH 135 (349)
Q Consensus 85 wd~~~~~~~~---~~-----------------~~~~~~--------~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~ 135 (349)
|++...+... .+ ..+... .......++++++..+++++.++ .+++|++...
T Consensus 72 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~ 151 (287)
T d1pgua2 72 NGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDL 151 (287)
T ss_dssp TTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEE
T ss_pred ccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceeeeeecccc
Confidence 9875321000 00 000000 01112345566677777766654 6888888766
Q ss_pred eEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCce
Q 018858 136 CLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESEL 215 (349)
Q Consensus 136 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 215 (349)
+....+...+...+++++|+| ++.+|++|+.||.|++||+.++.
T Consensus 152 ~~~~~~~~~~~~~v~~~~~s~------------------------------------~~~~l~~g~~dg~i~i~d~~~~~ 195 (287)
T d1pgua2 152 EVSFDLKTPLRAKPSYISISP------------------------------------SETYIAAGDVMGKILLYDLQSRE 195 (287)
T ss_dssp EEEEECSSCCSSCEEEEEECT------------------------------------TSSEEEEEETTSCEEEEETTTTE
T ss_pred ceeeeeeeccCCceeEEEecc------------------------------------Cccccccccccccccceeecccc
Confidence 655554434667788888888 89999999999999999998752
Q ss_pred eeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeee-------cCCccEEEEeeCC
Q 018858 216 NISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMF-------GERGKYLISGGND 288 (349)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~-------~~~~~~l~s~~~d 288 (349)
.....+.+|...|.+++|+|. .+++.+|++|+.|
T Consensus 196 ---------------------------------------~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D 236 (287)
T d1pgua2 196 ---------------------------------------VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLD 236 (287)
T ss_dssp ---------------------------------------EEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETT
T ss_pred ---------------------------------------cccccccccccccceeeecccccccccccCCCCeeEeecCC
Confidence 122345678888999988841 1356799999999
Q ss_pred CeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 289 KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 289 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
+.|+|||+++.. ..+....+|...|++++|+| ++ .|++++.|+.|++|++
T Consensus 237 ~~i~iw~~~~~~--------~~~~~~~~h~~~V~~v~~~~-~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 237 TNIFIYSVKRPM--------KIIKALNAHKDGVNNLLWET-PS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp SCEEEEESSCTT--------CCEEETTSSTTCEEEEEEEE-TT-EEEEEETTSCEEEEEE
T ss_pred CeEEEEECCCCC--------eEEEEeCCCCCCeEEEEECC-CC-EEEEEECCCeEEEEEE
Confidence 999999998753 56667789999999999988 55 6999999999999996
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.6e-34 Score=238.26 Aligned_cols=237 Identities=13% Similarity=0.118 Sum_probs=200.1
Q ss_pred eeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC--cEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEcc
Q 018858 11 LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSK--DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVH 88 (349)
Q Consensus 11 l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 88 (349)
..+|.+.|.+++|+|+ +++|++|+.||.|++||+... +....+..|...+..++|+|++.++++++.++.|++|+++
T Consensus 93 ~~~h~~~I~~v~~s~d-g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~ 171 (337)
T d1gxra_ 93 CLNRDNYIRSCKLLPD-GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH 171 (337)
T ss_dssp CSCTTSBEEEEEECTT-SSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred ecCCCCcEEEEEEcCC-CCEEEEeeccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3479999999999998 899999999999999998754 4567778899999999999999999999999999999998
Q ss_pred CCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCC
Q 018858 89 MPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNG 168 (349)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 168 (349)
+++ .......|...+.+++|++++..+++++.|+.|++||+++++.+..+. +...|.+++|+|
T Consensus 172 ~~~---~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~--~~~~i~~l~~~~------------ 234 (337)
T d1gxra_ 172 NQT---LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD--FTSQIFSLGYCP------------ 234 (337)
T ss_dssp TTE---EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECT------------
T ss_pred ccc---ccccccccccccccccccccccccccccccccccccccccceeecccc--cccceEEEEEcc------------
Confidence 753 344556678899999999999999999999999999999999888776 788999999999
Q ss_pred CCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeee
Q 018858 169 NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ 248 (349)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (349)
++++|++++.|+.+++||+++....... .....+..++|+|+++++++. +.|+
T Consensus 235 ------------------------~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~i~~v~~s~~g~~l~s~-s~Dg 287 (337)
T d1gxra_ 235 ------------------------TGEWLAVGMESSNVEVLHVNKPDKYQLH--LHESCVLSLKFAYCGKWFVST-GKDN 287 (337)
T ss_dssp ------------------------TSSEEEEEETTSCEEEEETTSSCEEEEC--CCSSCEEEEEECTTSSEEEEE-ETTS
T ss_pred ------------------------cccccceecccccccccccccccccccc--ccccccceEEECCCCCEEEEE-eCCC
Confidence 7899999999999999999987665433 345678999999999999853 3332
Q ss_pred cC----ceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEec
Q 018858 249 SG----GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDC 296 (349)
Q Consensus 249 ~~----~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~ 296 (349)
.+ ....+.+..+ .|...|.+++|+ |++++|++|+.||.|+|||+
T Consensus 288 ~i~iwd~~~~~~~~~~-~~~~~v~~~~~s---~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 288 LLNAWRTPYGASIFQS-KESSSVLSCDIS---VDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEEEETTTCCEEEEE-ECSSCEEEEEEC---TTSCEEEEEETTSCEEEEEE
T ss_pred eEEEEECCCCCEEEEc-cCCCCEEEEEEe---CCCCEEEEEeCCCeEEEEEE
Confidence 21 1122333333 477899999999 89999999999999999996
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=9.9e-34 Score=234.41 Aligned_cols=212 Identities=15% Similarity=0.101 Sum_probs=134.1
Q ss_pred CeeeeCCceee-eEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEE
Q 018858 8 PRRLRGHKATA-TCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFD 86 (349)
Q Consensus 8 ~~~l~~h~~~i-~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 86 (349)
..+|+||.+.| +|++| + +++|+||+.||+|++||+.+++.+.++.+|..+|.+++|+|+ .+|++++.|+.|++|+
T Consensus 5 ~~tL~GH~~~vitc~~~--~-~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~ 80 (355)
T d1nexb2 5 RTTLRGHMTSVITCLQF--E-DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD 80 (355)
T ss_dssp EEEEECCSSSCEEEEEE--E-TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEE
T ss_pred cEEECCcCCCcEEEEEE--C-CCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccc
Confidence 56799999885 66555 4 679999999999999999999999999999999999999985 5899999999999999
Q ss_pred ccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCC
Q 018858 87 VHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPEN 166 (349)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 166 (349)
+...+...... ...+........+.+++.++++++.|+.|++||+++........ ...........+.....
T Consensus 81 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~----- 152 (355)
T d1nexb2 81 IKKGCCTHVFE-GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHG--EEHDYPLVFHTPEENPY----- 152 (355)
T ss_dssp TTTTEEEEEEC-CCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-------------CCCEEESCTTTCTT-----
T ss_pred ccccccccccc-cccccccccccccccccceeeeecCCCcEEEEEccCCceecccc--ccceeccceeccccccc-----
Confidence 98754322222 22223445667778889999999999999999998766544333 11111111111100000
Q ss_pred CCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEE
Q 018858 167 NGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA 241 (349)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (349)
...........+ ....+ ++++++++..|+.|++||+++.+....... .......+.+++++..++
T Consensus 153 -~~~~~~~~~~~v--~~~~~------~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 217 (355)
T d1nexb2 153 -FVGVLRGHMASV--RTVSG------HGNIVVSGSYDNTLIVWDVAQMKCLYILSG-HTDRIYSTIYDHERKRCI 217 (355)
T ss_dssp -EEEEEECCSSCE--EEEEE------ETTEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEEETTTTEEE
T ss_pred -eeeeeeeccccc--ccccc------ccceeeeecccceeeeeecccccceeeeec-cccccccccccccceeee
Confidence 000000000011 11112 678999999999999999998643332221 122333444455544444
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.4e-33 Score=235.58 Aligned_cols=275 Identities=16% Similarity=0.170 Sum_probs=202.7
Q ss_pred EEEeCCCCcEEEEECCCCcE----EEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCccccee---------
Q 018858 31 VASSGEDGCICWFDLRSKDV----QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLE--------- 97 (349)
Q Consensus 31 l~t~~~dg~i~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------- 97 (349)
.+.+..++.+.+|+....+. +.....|...|++++|+|+|++|++|+ |+.|++||+.+++....+.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~ 109 (388)
T d1erja_ 31 ALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDP 109 (388)
T ss_dssp TSEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC--------
T ss_pred ccccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccc
Confidence 45667788999999765543 223335999999999999999999987 8999999998765433221
Q ss_pred ------eccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCc
Q 018858 98 ------SYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAG 171 (349)
Q Consensus 98 ------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 171 (349)
....|...|++++|+|++++|++|+.||.|++||...++.+..+. +|...|.++.+++
T Consensus 110 ~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~-~h~~~v~~~~~~~--------------- 173 (388)
T d1erja_ 110 ENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ-GHEQDIYSLDYFP--------------- 173 (388)
T ss_dssp ---------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECT---------------
T ss_pred cccccccccCCCCCEEEEEECCCCCcceecccccccccccccccccccccc-ccccccccccccc---------------
Confidence 123456679999999999999999999999999999999998888 8999999999999
Q ss_pred cccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCc
Q 018858 172 QCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG 251 (349)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (349)
++..+++++.++.+++||.++.......... ........+.+++.++++ +..++.+.
T Consensus 174 ---------------------~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~-~~~d~~i~ 230 (388)
T d1erja_ 174 ---------------------SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE-DGVTTVAVSPGDGKYIAA-GSLDRAVR 230 (388)
T ss_dssp ---------------------TSSEEEEEETTSEEEEEETTTTEEEEEEECS-SCEEEEEECSTTCCEEEE-EETTSCEE
T ss_pred ---------------------ccccccccccceeeeeeeccccccccccccc-cccccccccCCCCCeEEE-EcCCCeEE
Confidence 7889999999999999999987655543322 222333344457777774 33322211
Q ss_pred -------eee----eeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceec---ccccceeeecccc
Q 018858 252 -------KRL----HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQT---SINNDLLIKNINL 317 (349)
Q Consensus 252 -------~~~----~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~---~~~~~~~~~~~~~ 317 (349)
... .......+|...|+++.|+ |++++|++++.|+.|++||+.+...... ............|
T Consensus 231 i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s---~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (388)
T d1erja_ 231 VWDSETGFLVERLDSENESGTGHKDSVYSVVFT---RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH 307 (388)
T ss_dssp EEETTTCCEEEEEC------CCCSSCEEEEEEC---TTSSEEEEEETTSEEEEEEC---------------CEEEEEECC
T ss_pred EeecccCccceeeccccccccCCCCCEEEEEEC---CCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccc
Confidence 111 1112345688999999999 8999999999999999999987654321 1112344556678
Q ss_pred ccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 318 NKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 318 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
...|.+++|+| ++++|++++.||.|++||++
T Consensus 308 ~~~v~~~~~s~-~~~~l~sg~~dg~i~vwd~~ 338 (388)
T d1erja_ 308 KDFVLSVATTQ-NDEYILSGSKDRGVLFWDKK 338 (388)
T ss_dssp SSCEEEEEECG-GGCEEEEEETTSEEEEEETT
T ss_pred cceEEEEEECC-CCCEEEEEeCCCEEEEEECC
Confidence 99999999988 78899999999999999974
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=4e-34 Score=238.94 Aligned_cols=238 Identities=12% Similarity=0.110 Sum_probs=192.1
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCce
Q 018858 57 GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHC 136 (349)
Q Consensus 57 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 136 (349)
...+|++++|+|++++||+|+.||.|++||+++++ ...+..+.+|...|.+++|+|++++|++++.|+.|++||++++.
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~-~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~ 84 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT 84 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCC-EEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccc
Confidence 34789999999999999999999999999998653 34556678899999999999999999999999999999998765
Q ss_pred Ee--ceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCc
Q 018858 137 LY--KSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESE 214 (349)
Q Consensus 137 ~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 214 (349)
.. ..+. .|...|.+++|+| +++.|++++.|+.|++|++...
T Consensus 85 ~~~~~~~~-~~~~~v~~i~~~p------------------------------------~~~~l~~~s~d~~i~i~~~~~~ 127 (371)
T d1k8kc_ 85 WKPTLVIL-RINRAARCVRWAP------------------------------------NEKKFAVGSGSRVISICYFEQE 127 (371)
T ss_dssp EEEEEECC-CCSSCEEEEEECT------------------------------------TSSEEEEEETTSSEEEEEEETT
T ss_pred cccccccc-ccccccccccccc------------------------------------ccccceeecccCcceeeeeecc
Confidence 43 3445 6788999999999 7999999999999999998765
Q ss_pred eee---eecCCCCCCccceeeeeccccEEEEeeeeeecCce----------------------eeeeeeeecCCCcceEE
Q 018858 215 LNI---SRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGK----------------------RLHLDYSVGGHTAAASC 269 (349)
Q Consensus 215 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~h~~~i~~ 269 (349)
... ..........+.+++|+|+++++++ +..|+.+.. .........+|...|.+
T Consensus 128 ~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s-~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 206 (371)
T d1k8kc_ 128 NDWWVCKHIKKPIRSTVLSLDWHPNSVLLAA-GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHG 206 (371)
T ss_dssp TTEEEEEEECTTCCSCEEEEEECTTSSEEEE-EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEE
T ss_pred cccccccccccccccccccccccccccceec-cccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEE
Confidence 432 2334445677889999999999985 322221100 11234556678899999
Q ss_pred EEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 270 VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 270 i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
++|+ |++++|++++.|+.|++||+.++ ..+..+..|..+|.+++|+| ++++|+ ++.|+.+++|.
T Consensus 207 ~~~s---~~g~~l~s~~~d~~i~iwd~~~~---------~~~~~~~~~~~~v~s~~fs~-d~~~la-~g~d~~~~~~~ 270 (371)
T d1k8kc_ 207 VCFS---ANGSRVAWVSHDSTVCLADADKK---------MAVATLASETLPLLAVTFIT-ESSLVA-AGHDCFPVLFT 270 (371)
T ss_dssp EEEC---SSSSEEEEEETTTEEEEEEGGGT---------TEEEEEECSSCCEEEEEEEE-TTEEEE-EETTSSCEEEE
T ss_pred EEee---cccccccccccCCcceEEeeecc---------cceeeeecccccceeeeecC-CCCEEE-EEcCCceEEEE
Confidence 9999 89999999999999999999987 56677788999999999988 776555 55677777765
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.5e-33 Score=229.76 Aligned_cols=247 Identities=13% Similarity=0.087 Sum_probs=192.8
Q ss_pred eeeEEEEecCCCceEEEeCCCC-cEEEEECCCC--cEEEEeecC-CCCeEEEEEec--CCCEEEEEeCCCeEEEEEccCC
Q 018858 17 TATCCIASRDRPGFVASSGEDG-CICWFDLRSK--DVQLVTDVG-NGPVTSLCFKS--GNEDIIYVSSGKEVKSFDVHMP 90 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~~dg-~i~vwd~~~~--~~~~~~~~~-~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~ 90 (349)
.+++++|+|+ ++.|+.++.+. .|+.|+.... ..+..+.+| ...|++++|+| ++++|++|+.||+|++||+..+
T Consensus 19 ~~t~l~~~~~-~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~ 97 (325)
T d1pgua1 19 FTTHLSYDPT-TNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD 97 (325)
T ss_dssp CCCCCEEETT-TTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEE
T ss_pred CeEEEEECCC-CCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCC
Confidence 4678999999 77887765443 4566765443 336667776 46899999998 5679999999999999999765
Q ss_pred Cccccee-----eccCcccceEEEEEccCCCEEEEEc--CCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCC
Q 018858 91 ASWRPLE-----SYNYNKEEINQIVCNPKSSFLACAD--DGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 91 ~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
+....+. .+..+..+|.+++|+++++++++++ .++.+++|+..+++.+..+. +|...|.+++|+|+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~------ 170 (325)
T d1pgua1 98 KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVS-GHSQRINACHLKQS------ 170 (325)
T ss_dssp GGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECC-SCSSCEEEEEECSS------
T ss_pred cceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeee-eccccccccccccc------
Confidence 4333222 2345678899999999999888765 46789999999999999998 89999999999993
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
....+++++.|+.+++||.+..+.
T Consensus 171 -----------------------------~~~~~~~~~~d~~v~~~d~~~~~~--------------------------- 194 (325)
T d1pgua1 171 -----------------------------RPMRSMTVGDDGSVVFYQGPPFKF--------------------------- 194 (325)
T ss_dssp -----------------------------SSCEEEEEETTTEEEEEETTTBEE---------------------------
T ss_pred -----------------------------ccceEEEeeccccccccccccccc---------------------------
Confidence 334578899999999999886321
Q ss_pred eeeeecCceeeeeeeeecCCCcceEEEEEeeecCC-ccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceE
Q 018858 244 EILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGER-GKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVN 322 (349)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~-~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 322 (349)
.........|...|++++|+ |+ +.+|++++.|+.|++||++++ ..+..+.+|...+.
T Consensus 195 ----------~~~~~~~~~~~~~v~~v~~~---pd~~~~l~s~~~d~~i~iwd~~~~---------~~~~~l~~~~~~v~ 252 (325)
T d1pgua1 195 ----------SASDRTHHKQGSFVRDVEFS---PDSGEFVITVGSDRKISCFDGKSG---------EFLKYIEDDQEPVQ 252 (325)
T ss_dssp ----------EEEECSSSCTTCCEEEEEEC---STTCCEEEEEETTCCEEEEETTTC---------CEEEECCBTTBCCC
T ss_pred ----------ceecccccCCCCccEEeeec---cccceeccccccccceeeeeeccc---------cccccccccccccc
Confidence 12233455678899999999 65 689999999999999999987 56667777777765
Q ss_pred EEEeec--CCCCcEEEeeCCCeEEEeeCC
Q 018858 323 WLCTTP--TESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 323 ~~~~~~--~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.+.|+. +++++|++++.|+.|+|||++
T Consensus 253 ~~~~s~~~~dg~~l~s~s~D~~i~iwd~~ 281 (325)
T d1pgua1 253 GGIFALSWLDSQKFATVGADATIRVWDVT 281 (325)
T ss_dssp SCEEEEEESSSSEEEEEETTSEEEEEETT
T ss_pred cceeeeeccCCCEEEEEeCCCeEEEEECC
Confidence 555442 378899999999999999974
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.9e-34 Score=236.14 Aligned_cols=289 Identities=12% Similarity=0.068 Sum_probs=195.5
Q ss_pred CCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcE---EEEeecCCCCeEEEEEecCC-CEEEEEeCCC
Q 018858 5 EAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV---QLVTDVGNGPVTSLCFKSGN-EDIIYVSSGK 80 (349)
Q Consensus 5 ~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~---~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg 80 (349)
|+.++.+++|++.|++++|+|+ +++|++|+.||+|+|||++.+.. +.....|..+|.+++|+|++ .+|++|+.|+
T Consensus 1 ~~~v~~~~~h~d~I~~l~fsp~-~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~ 79 (342)
T d1yfqa_ 1 MQIVQIEQAPKDYISDIKIIPS-KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQG 79 (342)
T ss_dssp CEEEECSSCCSSCEEEEEEEGG-GTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTS
T ss_pred CCeEEcCCCCCCCEEEEEEeCC-CCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccccc
Confidence 4678889999999999999998 89999999999999999976543 23334699999999999864 5789999999
Q ss_pred eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceecc---cc--ccceeEEEEc
Q 018858 81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA---GH--SSICSSVQFI 155 (349)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~--~~~v~~~~~~ 155 (349)
.|++|++........... .+........+.++...+++++.++.+++||++.+........ .+ ......+.+.
T Consensus 80 ~v~~w~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (342)
T d1yfqa_ 80 EILKVDLIGSPSFQALTN--NEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMD 157 (342)
T ss_dssp CEEEECSSSSSSEEECBS--CCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEE
T ss_pred ceeeeecccccccccccc--cccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeee
Confidence 999999987543322222 2233345556667888999999999999999875432222110 11 1223334444
Q ss_pred cCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeec--CCCCCCccceeee
Q 018858 156 PWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS--KSTTKPLKGSQST 233 (349)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~ 233 (349)
+ .+..+++++.|+.|++||++........ ............+
T Consensus 158 ~------------------------------------~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (342)
T d1yfqa_ 158 T------------------------------------NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVAL 201 (342)
T ss_dssp E------------------------------------CSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEE
T ss_pred c------------------------------------cCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEe
Confidence 4 6788999999999999999865432211 1112222333333
Q ss_pred e-ccccEEEEeeeeeecCc----------------eee---eeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEE
Q 018858 234 S-KVNIRDAEMEILDQSGG----------------KRL---HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKV 293 (349)
Q Consensus 234 ~-~~~~~~~~~~~~~~~~~----------------~~~---~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~v 293 (349)
. .++..+++ +..++.+. ... .......+|...+++++|+ |++++|++|+.||.|++
T Consensus 202 ~~~~~~~~~~-~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s---p~~~~lasg~~Dg~v~v 277 (342)
T d1yfqa_ 202 LPKEQEGYAC-SSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFS---PRHKFLYTAGSDGIISC 277 (342)
T ss_dssp CSGGGCEEEE-EETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEEC---TTTCCEEEEETTSCEEE
T ss_pred ecCCCCEEEe-ecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEec---CCccEEEEECCCCEEEE
Confidence 3 34444442 22111100 001 1112234567789999999 89999999999999999
Q ss_pred EecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 294 WDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 294 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
||++++ +.+..+..+ ..+..++++| ++++|++++.|+.+++|.
T Consensus 278 WD~~~~---------~~l~~~~~~-~~~~~~~~s~-~~~~l~~a~sdd~~~~~~ 320 (342)
T d1yfqa_ 278 WNLQTR---------KKIKNFAKF-NEDSVVKIAC-SDNILCLATSDDTFKTNA 320 (342)
T ss_dssp EETTTT---------EEEEECCCC-SSSEEEEEEE-CSSEEEEEEECTHHHHCS
T ss_pred EECCCC---------cEEEEecCC-CCCEEEEEEe-CCCEEEEEEcCCcEEEee
Confidence 999997 445444332 2334456666 677999998888776664
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.1e-32 Score=224.27 Aligned_cols=266 Identities=14% Similarity=0.199 Sum_probs=220.0
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK 83 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 83 (349)
+++.++++++|.+.|.+++|+|+ +.++++++.++.+.+|+....+....+..|...+.++.++|+++.+++++.|+.++
T Consensus 48 ~~~~~~~~~~h~~~V~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 126 (317)
T d1vyhc1 48 TGDFERTLKGHTDSVQDISFDHS-GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIK 126 (317)
T ss_dssp TCCCCEEECCCSSCEEEEEECTT-SSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred CCCEEEEEeCCCCcEEEEeeecc-cccccccccccccccccccccccccccccccccceeeeccCCCceEEeeccCccee
Confidence 57889999999999999999998 89999999999999999999988888889999999999999999999999999999
Q ss_pred EEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCC
Q 018858 84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGL 163 (349)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 163 (349)
+||+++++ .+..+..|...+.+++|+|++.+|++++.|+.|++|++.+++....+. .+...+.+++|.|+......
T Consensus 127 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~ 202 (317)
T d1vyhc1 127 MWEVQTGY---CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR-EHRHVVECISWAPESSYSSI 202 (317)
T ss_dssp EEETTTCC---EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECCSCGGGGG
T ss_pred Eeecccce---eeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEe-cCCCCceEEEEeecccccee
Confidence 99999764 344556677889999999999999999999999999999999999998 89999999999996432211
Q ss_pred CCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEe
Q 018858 164 PENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (349)
.. ........... .+..+++++.|+.|++||+++++....... ....+..++++|+++++++.
T Consensus 203 ~~----------~~~~~~~~~~~------~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~ 265 (317)
T d1vyhc1 203 SE----------ATGSETKKSGK------PGPFLLSGSRDKTIKMWDVSTGMCLMTLVG-HDNWVRGVLFHSGGKFILSC 265 (317)
T ss_dssp GG----------CCSCC-------------CCEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEECSSSSCEEEE
T ss_pred ec----------cccceeeeecc------CCceeEeccCCCEEEEEECCCCcEEEEEeC-CCCCEEEEEECCCCCEEEEE
Confidence 00 00011111111 578899999999999999999887766543 35678899999999999853
Q ss_pred eeeee----cCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEe
Q 018858 244 EILDQ----SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWD 295 (349)
Q Consensus 244 ~~~~~----~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd 295 (349)
..|+ +.....+++..+.+|...|++++|+ |++++|++|+.||+|+|||
T Consensus 266 -~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s---~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 266 -ADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH---KTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp -ETTTEEEEECCTTSCCCEEEECCSSCEEEEEEC---SSSSCEEEEETTSEEEEEC
T ss_pred -ECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEc---CCCCEEEEEeCCCeEEEeC
Confidence 3332 2233456778888999999999999 8999999999999999997
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=9.5e-33 Score=228.45 Aligned_cols=247 Identities=13% Similarity=0.131 Sum_probs=190.8
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCC--CeEEEEEecCCCEEEEEeCCCe
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNG--PVTSLCFKSGNEDIIYVSSGKE 81 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~ 81 (349)
+++++++|++|.++|++++|+|+ .+|++|+.|+.|++|+....+.......... ......+.+++.++++++.|+.
T Consensus 42 ~~~~~~~l~~H~~~V~~l~~s~~--~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 119 (355)
T d1nexb2 42 NKKFLLQLSGHDGGVWALKYAHG--GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT 119 (355)
T ss_dssp TTEEEEEEECCSSCEEEEEEETT--TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSE
T ss_pred CCcEEEEEECCCCCEEEEEEcCC--CEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCc
Confidence 56788999999999999999985 5899999999999999998877655554333 3345566788888899999999
Q ss_pred EEEEEccCCCcc------------------------------------------------------------cceeeccC
Q 018858 82 VKSFDVHMPASW------------------------------------------------------------RPLESYNY 101 (349)
Q Consensus 82 i~iwd~~~~~~~------------------------------------------------------------~~~~~~~~ 101 (349)
|++||+++.... +.+.....
T Consensus 120 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~ 199 (355)
T d1nexb2 120 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG 199 (355)
T ss_dssp EEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred EEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeec
Confidence 999987643110 01111223
Q ss_pred cccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEE
Q 018858 102 NKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHA 181 (349)
Q Consensus 102 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (349)
+...+.++.++|++.++++++.|+.|++||++++..+..++ +|...|.++++++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-~h~~~v~~~~~~~------------------------- 253 (355)
T d1nexb2 200 HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ-GHTALVGLLRLSD------------------------- 253 (355)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCCCEEEECS-------------------------
T ss_pred cccccccccccccceeeecccccceEEeeeccccccccccc-ccccccccccccc-------------------------
Confidence 44567788899999999999999999999999999999999 9999999999865
Q ss_pred eecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeec
Q 018858 182 IAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVG 261 (349)
Q Consensus 182 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (349)
++|++|+.||.|++||+++.. ..+.
T Consensus 254 -------------~~l~~~~~dg~i~iwd~~~~~------------------------------------------~~~~ 278 (355)
T d1nexb2 254 -------------KFLVSAAADGSIRGWDANDYS------------------------------------------RKFS 278 (355)
T ss_dssp -------------SEEEEECTTSEEEEEETTTCC------------------------------------------EEEE
T ss_pred -------------ceeeeeecccccccccccccc------------------------------------------eecc
Confidence 689999999999999998631 2233
Q ss_pred CCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceeccccccee-eeccccccceEEEEeecCCCCcEEEeeCC
Q 018858 262 GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLL-IKNINLNKKVNWLCTTPTESENLVVCDTS 340 (349)
Q Consensus 262 ~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 340 (349)
.|...+.++.+.+ ++++++++|+ |+.|+|||++++ +++ ....+|.+.|++++|+| + .++++++.|
T Consensus 279 ~~~~~~~~~~~~~--~~~~~l~~g~-d~~i~vwd~~tg---------~~~~~~~~~~~~~V~~v~~~~-~-~~~~~~s~d 344 (355)
T d1nexb2 279 YHHTNLSAITTFY--VSDNILVSGS-ENQFNIYNLRSG---------KLVHANILKDADQIWSVNFKG-K-TLVAAVEKD 344 (355)
T ss_dssp EECTTCCCCCEEE--ECSSEEEEEE-TTEEEEEETTTC---------CBCCSCTTTTCSEEEEEEEET-T-EEEEEEESS
T ss_pred cccCCceEEEEEc--CCCCEEEEEe-CCEEEEEECCCC---------CEEEEEecCCCCCEEEEEEcC-C-eEEEEEECC
Confidence 4555566654442 6777776665 899999999997 444 35678999999999977 4 367788999
Q ss_pred CeEEEee
Q 018858 341 KVVKVYS 347 (349)
Q Consensus 341 g~i~iw~ 347 (349)
|.++||.
T Consensus 345 g~~~l~~ 351 (355)
T d1nexb2 345 GQSFLEI 351 (355)
T ss_dssp SCEEEEE
T ss_pred CcEEEEE
Confidence 9866653
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3e-32 Score=229.26 Aligned_cols=263 Identities=13% Similarity=0.112 Sum_probs=182.4
Q ss_pred CeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc------EEEEeecCCCCeEEEEEe---c----CCCEEE
Q 018858 8 PRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD------VQLVTDVGNGPVTSLCFK---S----GNEDII 74 (349)
Q Consensus 8 ~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~------~~~~~~~~~~~v~~~~~~---~----~~~~l~ 74 (349)
....++|.+.|+++++++ ++++|++.|++|++||..+.+ .......|...+..+... + ++..++
T Consensus 7 ~~~~~~H~~~I~~v~~~~---~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (393)
T d1sq9a_ 7 ANAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA 83 (393)
T ss_dssp EEESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred eecCCcccCccEEEEEeC---CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEE
Confidence 345689999999999863 589999999999999976543 123334455554433321 1 234678
Q ss_pred EEeCCCeEEEEEccCCCcccceee-------ccCcccceEEEEEccC-----CCEEEEEcCCCcEEEEEcCCceE-----
Q 018858 75 YVSSGKEVKSFDVHMPASWRPLES-------YNYNKEEINQIVCNPK-----SSFLACADDGGDVKIIDIRQHCL----- 137 (349)
Q Consensus 75 ~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~i~d~~~~~~----- 137 (349)
+++.||.|++|++........+.. ...+...+..++|.++ +.++++++.||.+++|++.....
T Consensus 84 s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~ 163 (393)
T d1sq9a_ 84 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL 163 (393)
T ss_dssp EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred EEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCccccee
Confidence 899999999999875432222211 1123445677788765 46889999999999999853211
Q ss_pred -------------eceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCC
Q 018858 138 -------------YKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG 204 (349)
Q Consensus 138 -------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 204 (349)
..... .+...+.+++|+| ++ +|++|+.||
T Consensus 164 ~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~s~------------------------------------dg-~lasgs~Dg 205 (393)
T d1sq9a_ 164 TLNWSPTLELQGTVESPM-TPSQFATSVDISE------------------------------------RG-LIATGFNNG 205 (393)
T ss_dssp TTCCCCEEEEEEEECCSS-SSCCCCCEEEECT------------------------------------TS-EEEEECTTS
T ss_pred eeeeccceecccceeccc-CCCCcEEEEEECC------------------------------------CC-EEEEEeCCC
Confidence 00111 2233455566665 55 889999999
Q ss_pred eEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEE
Q 018858 205 VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLIS 284 (349)
Q Consensus 205 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s 284 (349)
.|++||+++++.... ......+.+|..+|++++|+ |++++|++
T Consensus 206 ~i~iwd~~~~~~~~~----------------------------------~~~~~~l~~h~~~V~~l~~s---pdg~~l~s 248 (393)
T d1sq9a_ 206 TVQISELSTLRPLYN----------------------------------FESQHSMINNSNSIRSVKFS---PQGSLLAI 248 (393)
T ss_dssp EEEEEETTTTEEEEE----------------------------------EECCC---CCCCCEEEEEEC---SSTTEEEE
T ss_pred cEEEEeecccccccc----------------------------------cccccccccccceEEEcccc---cccceeee
Confidence 999999997543221 13345677899999999999 89999999
Q ss_pred eeCCC---eEEEEecCCCcceeccc----ccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 285 GGNDK---LVKVWDCSRFQGVQTSI----NNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 285 ~~~d~---~i~vwd~~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
|+.|+ .|++||+++++...... .........+|.+.|++++|+| ++++|++++.|++|++||+.
T Consensus 249 gs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fsp-d~~~l~S~s~D~~v~vWd~~ 319 (393)
T d1sq9a_ 249 AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVK 319 (393)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEETT
T ss_pred ecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCC-CCCeeEEECCCCEEEEEECC
Confidence 99886 49999999886543221 1233344568999999999988 88999999999999999974
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.7e-31 Score=219.85 Aligned_cols=241 Identities=10% Similarity=0.150 Sum_probs=183.7
Q ss_pred CcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcE
Q 018858 48 KDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDV 127 (349)
Q Consensus 48 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 127 (349)
.+..+++++|.++|++++|+|++++|++|+.||.|+|||+.+++ .+..+..|...|.+++|+|++.++++|+.|+.+
T Consensus 45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~---~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i 121 (340)
T d1tbga_ 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN---KVHAIPLRSSWVMTCAYAPSGNYVACGGLDNIC 121 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTE---EEEEEECSCSCEEEEEECTTSSEEEEEETTCCE
T ss_pred eeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccce---eEEEEecccccEEeeEeeccceeeeeeccccee
Confidence 35677899999999999999999999999999999999999764 445566688999999999999999999999999
Q ss_pred EEEEcCCce----EeceeccccccceeEEEEccCCCCCC-CCCCC----------CCCccccCCceeEEeecCcccccCC
Q 018858 128 KIIDIRQHC----LYKSLRAGHSSICSSVQFIPWKPWEG-LPENN----------GNAGQCYNPAFVHAIAIPDADMLDK 192 (349)
Q Consensus 128 ~i~d~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (349)
++|+..... ....+. +|..........++..... ..+.. ...........+......+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 194 (340)
T d1tbga_ 122 SIYNLKTREGNVRVSRELA-GHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP------ 194 (340)
T ss_dssp EEEESSSSCSCCCEEEEEC-CCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECT------
T ss_pred ecccccccccccccceecc-cccccccccccccccccccccccccccccccccccccccccccceeEeeecccc------
Confidence 999987432 333444 4554444444433221110 00000 1111112223445555555
Q ss_pred CCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEE
Q 018858 193 TNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAF 272 (349)
Q Consensus 193 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~ 272 (349)
.+.++++++.|+.|++||++++ .++..+.+|...|++++|
T Consensus 195 ~~~~~~~~~~d~~v~i~d~~~~----------------------------------------~~~~~~~~h~~~i~~v~~ 234 (340)
T d1tbga_ 195 DTRLFVSGACDASAKLWDVREG----------------------------------------MCRQTFTGHESDINAICF 234 (340)
T ss_dssp TSSEEEEEETTTEEEEEETTTT----------------------------------------EEEEEECCCSSCEEEEEE
T ss_pred ccceeEEeecCceEEEEECCCC----------------------------------------cEEEEEeCCCCCeEEEEE
Confidence 7889999999999999999975 556678889999999999
Q ss_pred eeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 273 SMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 273 ~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
+ |++++|++|+.|+.|++||+..... ........+...|.+++|+| ++++|++++.||.|++||+.
T Consensus 235 ~---p~~~~l~s~s~d~~i~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~s~-~~~~l~~g~~dg~i~iwd~~ 300 (340)
T d1tbga_ 235 F---PNGNAFATGSDDATCRLFDLRADQE-------LMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDAL 300 (340)
T ss_dssp C---TTSSEEEEEETTSCEEEEETTTTEE-------EEEECCTTCCSCEEEEEECS-SSCEEEEEETTSCEEEEETT
T ss_pred C---CCCCEEEEEeCCCeEEEEeeccccc-------ccccccccccCceEEEEECC-CCCEEEEEECCCEEEEEECC
Confidence 9 8999999999999999999998732 11223455777899999988 88899999999999999974
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=9.1e-32 Score=217.84 Aligned_cols=245 Identities=14% Similarity=0.105 Sum_probs=183.8
Q ss_pred CcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcE
Q 018858 48 KDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDV 127 (349)
Q Consensus 48 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 127 (349)
|+..+.+.+|..+|++++|+|++++|++|+.||.|++||+++++..+.+ ...|...|++++|+|+++++ +++.|+.+
T Consensus 2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~--~~~h~~~v~~v~~~~~g~~~-~~~~d~~v 78 (299)
T d1nr0a2 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF--PDVHATMITGIKTTSKGDLF-TVSWDDHL 78 (299)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECS--SCSCSSCEEEEEECTTSCEE-EEETTTEE
T ss_pred CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE--cCCCCCcEEEEEeeccceee-cccceeeE
Confidence 5667899999999999999999999999999999999999987544332 23577899999999998754 55678999
Q ss_pred EEEEcCCceEec---eeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCC
Q 018858 128 KIIDIRQHCLYK---SLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG 204 (349)
Q Consensus 128 ~i~d~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 204 (349)
++|+........ ... .+...+.+++|+| +++.++++ .++
T Consensus 79 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~------------------------------------~g~~~~~~-~~~ 120 (299)
T d1nr0a2 79 KVVPAGGSGVDSSKAVAN-KLSSQPLGLAVSA------------------------------------DGDIAVAA-CYK 120 (299)
T ss_dssp EEECSSSSSSCTTSCCEE-ECSSCEEEEEECT------------------------------------TSSCEEEE-ESS
T ss_pred EEeccCCccccccccccc-ccccccccccccc------------------------------------cccccccc-ccc
Confidence 999987543211 112 4566778888888 67766655 457
Q ss_pred eEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCc----eeeee-eeeecCCCcceEEEEEeeecCCc
Q 018858 205 VVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG----KRLHL-DYSVGGHTAAASCVAFSMFGERG 279 (349)
Q Consensus 205 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~h~~~i~~i~~~~~~~~~ 279 (349)
.+++|+....... ........++++|+++++++ +..++.+. ..... ......|...|++++|+ |++
T Consensus 121 ~i~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~l~~-g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~---~~~ 191 (299)
T d1nr0a2 121 HIAIYSHGKLTEV-----PISYNSSCVALSNDKQFVAV-GGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFS---NNG 191 (299)
T ss_dssp EEEEEETTEEEEE-----ECSSCEEEEEECTTSCEEEE-EETTSEEEEEEEETTEEEEEEEEECSSCEEEEEEC---TTS
T ss_pred ccccccccccccc-----cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccc---ccc
Confidence 8999996543221 12344678899999999885 32222211 11111 12334688899999999 899
Q ss_pred cEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 280 KYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 280 ~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
++|++++.|+.|++||+.++... .......+|...|++++|+| ++++|++++.||.|++||++
T Consensus 192 ~~l~~~~~d~~i~~~~~~~~~~~------~~~~~~~~h~~~v~~l~~s~-~~~~l~sgs~dg~i~iwd~~ 254 (299)
T d1nr0a2 192 AFLVATDQSRKVIPYSVANNFEL------AHTNSWTFHTAKVACVSWSP-DNVRLATGSLDNSVIVWNMN 254 (299)
T ss_dssp SEEEEEETTSCEEEEEGGGTTEE------SCCCCCCCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETT
T ss_pred ccccccccccccccccccccccc------cccccccccccccccccccc-cccceEEEcCCCEEEEEECC
Confidence 99999999999999999876432 22345567899999999988 88899999999999999974
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=2.3e-30 Score=217.65 Aligned_cols=244 Identities=14% Similarity=0.165 Sum_probs=175.0
Q ss_pred CceEEEeCCCCcEEEEECCCCcE---EE--Ee-----ecCCCCeEEEEEecC-----CCEEEEEeCCCeEEEEEccCCCc
Q 018858 28 PGFVASSGEDGCICWFDLRSKDV---QL--VT-----DVGNGPVTSLCFKSG-----NEDIIYVSSGKEVKSFDVHMPAS 92 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~~---~~--~~-----~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~ 92 (349)
..++++++.||.|++|++..... .. .. ..+...+..++|.++ +.++++++.||.+++|++.....
T Consensus 79 ~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~ 158 (393)
T d1sq9a_ 79 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD 158 (393)
T ss_dssp EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred CcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCc
Confidence 45788999999999999754321 11 11 123456777888765 46789999999999999863211
Q ss_pred c---------------cceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceec-----cccccceeEE
Q 018858 93 W---------------RPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR-----AGHSSICSSV 152 (349)
Q Consensus 93 ~---------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~~v~~~ 152 (349)
. ........+...+.+++|+|++ +|++|+.||.|++||+++++++..+. .+|...|.++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l 237 (393)
T d1sq9a_ 159 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSV 237 (393)
T ss_dssp HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEE
T ss_pred ccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEc
Confidence 0 0111122334568899999987 89999999999999999888765443 1678899999
Q ss_pred EEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCC---eEEEEEccCceeeeecCCCCCCccc
Q 018858 153 QFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG---VVDVINIESELNISRSKSTTKPLKG 229 (349)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~ 229 (349)
+|+| ++++|++|+.|+ .|++||+++++....+...
T Consensus 238 ~~sp------------------------------------dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~------ 275 (393)
T d1sq9a_ 238 KFSP------------------------------------QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVP------ 275 (393)
T ss_dssp EECS------------------------------------STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC------
T ss_pred cccc------------------------------------ccceeeeecCCCCcceeeecccccceeeeeeccc------
Confidence 9999 899999999886 5999999987554433221
Q ss_pred eeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccc
Q 018858 230 SQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINND 309 (349)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~ 309 (349)
.........+.+|...|++++|+ |++++|+|++.|++|+|||+++++
T Consensus 276 ---------------------~~~~~~~~~~~gH~~~V~~l~fs---pd~~~l~S~s~D~~v~vWd~~~g~--------- 322 (393)
T d1sq9a_ 276 ---------------------THSSQASLGEFAHSSWVMSLSFN---DSGETLCSAGWDGKLRFWDVKTKE--------- 322 (393)
T ss_dssp -----------------------------CCBSBSSCEEEEEEC---SSSSEEEEEETTSEEEEEETTTTE---------
T ss_pred ---------------------cccccceeeeecccCceeeeccC---CCCCeeEEECCCCEEEEEECCCCC---------
Confidence 11123445667899999999999 899999999999999999999984
Q ss_pred eeeecccccc---------------------ceEEEEeecCC---------CCcEEEeeCCCeEEEee
Q 018858 310 LLIKNINLNK---------------------KVNWLCTTPTE---------SENLVVCDTSKVVKVYS 347 (349)
Q Consensus 310 ~~~~~~~~~~---------------------~v~~~~~~~~~---------~~~l~~~~~dg~i~iw~ 347 (349)
++..+.+|.+ .+..+.|.+.. .+.+++++.|+.|++|.
T Consensus 323 ~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~ 390 (393)
T d1sq9a_ 323 RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 390 (393)
T ss_dssp EEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred EEEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEcCCeEEEEe
Confidence 3444444433 35566665421 23588899999999996
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.97 E-value=1.8e-30 Score=215.54 Aligned_cols=285 Identities=8% Similarity=0.028 Sum_probs=205.1
Q ss_pred CCCeeeeCCceeeeEEEEecCCCceEEEeCCC--CcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 018858 6 AKPRRLRGHKATATCCIASRDRPGFVASSGED--GCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVK 83 (349)
Q Consensus 6 ~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~d--g~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 83 (349)
..+..+ +|...|.+++|+|+ +++|++++.+ ..|++||.++++.. .+..|...|.+++|+|++++|++++.++.++
T Consensus 34 ~~~~~~-~~~~~v~~~~~spD-g~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~ 110 (360)
T d1k32a3 34 TYVLKV-PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIM 110 (360)
T ss_dssp SBEEEC-SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEE
T ss_pred CcEEEc-cCCCCEEEEEECCC-CCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEEeeeecccccccceeccccccc
Confidence 334444 69999999999998 7888766544 37999999887754 5677999999999999999999999999999
Q ss_pred EEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEc----------CCCcEEEEEcCCceEeceeccccccceeEEE
Q 018858 84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACAD----------DGGDVKIIDIRQHCLYKSLRAGHSSICSSVQ 153 (349)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~ 153 (349)
+|++.+++.. ..+..+...+.+++|+|++++|+.+. .++.+++||+.+++...... +...+..++
T Consensus 111 ~~~~~~~~~~---~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~--~~~~~~~~~ 185 (360)
T d1k32a3 111 TVDLETGKPT---VIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT--ENSHDYAPA 185 (360)
T ss_dssp EEETTTCCEE---EEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSC--SSSBEEEEE
T ss_pred ccccccccee---eeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecc--ccccccccc
Confidence 9999876543 33444567889999999999998643 34569999999887765544 667788899
Q ss_pred EccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeec------CCCCCCc
Q 018858 154 FIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS------KSTTKPL 227 (349)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------~~~~~~~ 227 (349)
|+| +++.|++++.++.+.+|+.......... .......
T Consensus 186 ~sp------------------------------------dg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 229 (360)
T d1k32a3 186 FDA------------------------------------DSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGS 229 (360)
T ss_dssp ECT------------------------------------TSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTC
T ss_pred ccC------------------------------------CCCEEEEEeCCCceEcccccccceeeccccceEEEecccCc
Confidence 999 8999999999999999997654322110 0112233
Q ss_pred cceeeeeccccEEEEeeeeeecC--------ceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCC
Q 018858 228 KGSQSTSKVNIRDAEMEILDQSG--------GKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 299 (349)
...+.+++++..++... .+... .........+..+.+.+..+.+.+.++.+.++++++.++.|++||+.++
T Consensus 230 ~~~~~~s~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 308 (360)
T d1k32a3 230 PNPTKLVPRSMTSEAGE-YDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR 308 (360)
T ss_dssp CCGGGCCCGGGSCCCCC-CCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTC
T ss_pred cccceECCCcCcccccc-eeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCC
Confidence 44567777777655311 11100 0000111223334445555555533355567888899999999999886
Q ss_pred cceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 300 QGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
+. ..|.+.|.+++|+| ||++|++++.||.|++||++
T Consensus 309 ---------~~----~~~~~~v~~~~~Sp-DG~~l~~~~~Dg~i~v~d~~ 344 (360)
T d1k32a3 309 ---------KV----TEVKNNLTDLRLSA-DRKTVMVRKDDGKIYTFPLE 344 (360)
T ss_dssp ---------CE----EEEEEEEEEEEECT-TSCEEEEEETTSCEEEEESS
T ss_pred ---------eE----EEecCCcCEEEECC-CCCEEEEEECCCeEEEEECC
Confidence 22 23456789999988 99999999999999999974
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.7e-28 Score=201.63 Aligned_cols=276 Identities=16% Similarity=0.143 Sum_probs=189.9
Q ss_pred EECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEc
Q 018858 43 FDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACAD 122 (349)
Q Consensus 43 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 122 (349)
|+..+.++...+++|...|.+ +++++|++|++|+.||.|+|||+++++ .+..+.+|...|.+++|+|+ +|++++
T Consensus 1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~---~~~~~~~h~~~V~~v~~~~~--~l~s~s 74 (342)
T d2ovrb2 1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGK---CLRTLVGHTGGVWSSQMRDN--IIISGS 74 (342)
T ss_dssp HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCC---EEEECCCCSSCEEEEEEETT--EEEEEE
T ss_pred CCCCCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCC---EEEEEeCCCCCEEEEEeCCC--ccccce
Confidence 555566777889999999865 467789999999999999999998764 45667789999999999874 999999
Q ss_pred CCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCC-----CCCcc---ccCCceeEEeecCcccccCCCC
Q 018858 123 DGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENN-----GNAGQ---CYNPAFVHAIAIPDADMLDKTN 194 (349)
Q Consensus 123 ~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 194 (349)
.|+.+++|+........... .+...+......+.....+..+.. ...+. .............+ ..
T Consensus 75 ~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 147 (342)
T d2ovrb2 75 TDRTLKVWNAETGECIHTLY-GHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY------DG 147 (342)
T ss_dssp TTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE------CS
T ss_pred ecccccccccccccceeccc-ccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeecc------cc
Confidence 99999999998777665555 444455554444432111111111 00000 00000001111111 56
Q ss_pred cEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecC----ceeeeeeeeecCCCcceEEE
Q 018858 195 KICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG----GKRLHLDYSVGGHTAAASCV 270 (349)
Q Consensus 195 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~h~~~i~~i 270 (349)
..+++++.|+.|++||.+........... ......+++++..+++ +..|+.+ ......+..+.+|...+.++
T Consensus 148 ~~~~~~~~d~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~l~s-~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~ 223 (342)
T d2ovrb2 148 RRVVSGAYDFMVKVWDPETETCLHTLQGH---TNRVYSLQFDGIHVVS-GSLDTSIRVWDVETGNCIHTLTGHQSLTSGM 223 (342)
T ss_dssp SCEEEEETTSCEEEEEGGGTEEEEEECCC---SSCEEEEEECSSEEEE-EETTSCEEEEETTTCCEEEEECCCCSCEEEE
T ss_pred ceeeeecCCCeEEEeecccceeeEEEcCc---ccccccccCCCCEEEE-EeCCCeEEEeecccceeeeEecccccceeEE
Confidence 67889999999999999987766554433 2345566778888874 3333322 22345667788899999888
Q ss_pred EEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 271 AFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 271 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
.++ +++|++++.|+.|++||+...+.. ..+.....|...+.++.++ ++++++++.||.|++||++
T Consensus 224 ~~~-----~~~l~s~s~d~~i~iwd~~~~~~~------~~~~~~~~~~~~~~~~~~~---~~~~~s~s~Dg~i~iwd~~ 288 (342)
T d2ovrb2 224 ELK-----DNILVSGNADSTVKIWDIKTGQCL------QTLQGPNKHQSAVTCLQFN---KNFVITSSDDGTVKLWDLK 288 (342)
T ss_dssp EEE-----TTEEEEEETTSCEEEEETTTCCEE------EEECSTTSCSSCEEEEEEC---SSEEEEEETTSEEEEEETT
T ss_pred ecC-----CCEEEEEcCCCEEEEEeccccccc------ccccccceeeeceeecccC---CCeeEEEcCCCEEEEEECC
Confidence 765 469999999999999999887422 2223334566777777774 4599999999999999974
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=2.9e-28 Score=200.00 Aligned_cols=260 Identities=12% Similarity=0.038 Sum_probs=179.8
Q ss_pred cEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCC-CEEEEEcCCCcE
Q 018858 49 DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS-SFLACADDGGDV 127 (349)
Q Consensus 49 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i 127 (349)
+.++..++|...|++++|+|++++|++|+.||+|+|||++.+.....+.....|...|.+++|+|++ .+|++|+.||.|
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v 81 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence 4567778999999999999999999999999999999998765444444444688999999999865 688999999999
Q ss_pred EEEEcCCceEeceeccccccc-eeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeE
Q 018858 128 KIIDIRQHCLYKSLRAGHSSI-CSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVV 206 (349)
Q Consensus 128 ~i~d~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 206 (349)
++|++.......... .+... .....+.+ +...+++++.++.+
T Consensus 82 ~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~ 124 (342)
T d1yfqa_ 82 LKVDLIGSPSFQALT-NNEANLGICRICKY------------------------------------GDDKLIAASWDGLI 124 (342)
T ss_dssp EEECSSSSSSEEECB-SCCCCSCEEEEEEE------------------------------------TTTEEEEEETTSEE
T ss_pred eeeeccccccccccc-cccccccccccccc------------------------------------cccccccccccccc
Confidence 999998776655555 33333 33444444 67889999999999
Q ss_pred EEEEccCceeeeec-----CCCCCCccceeeeeccccEEEEeeeeeecC-------ceeeeeeeeecCCCcceEEEEEee
Q 018858 207 DVINIESELNISRS-----KSTTKPLKGSQSTSKVNIRDAEMEILDQSG-------GKRLHLDYSVGGHTAAASCVAFSM 274 (349)
Q Consensus 207 ~i~d~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~h~~~i~~i~~~~ 274 (349)
++||++........ ............+.+++..++. +..++.+ ............+...+.+..+.|
T Consensus 125 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (342)
T d1yfqa_ 125 EVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIV-GMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLP 203 (342)
T ss_dssp EEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEE-EESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECS
T ss_pred ceeeccccccceeeecccccccccceeeeeeeeccCCceee-ecCCCcEEEEecccCcccceeeeecccccceeeeEeec
Confidence 99999764322211 1122233345566677766663 2222211 111111112223344556666653
Q ss_pred ecCCccEEEEeeCCCeEEEEecCCCcceeccccc------ceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 275 FGERGKYLISGGNDKLVKVWDCSRFQGVQTSINN------DLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 275 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.++..+++++.||.+.+|+............. ........|...+++++|+| ++++|++|+.||.|++||+
T Consensus 204 --~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-~~~~lasg~~Dg~v~vWD~ 280 (342)
T d1yfqa_ 204 --KEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNL 280 (342)
T ss_dssp --GGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECT-TTCCEEEEETTSCEEEEET
T ss_pred --CCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecC-CccEEEEECCCCEEEEEEC
Confidence 67789999999999999998765432211111 11122345777899999998 7889999999999999997
Q ss_pred C
Q 018858 349 S 349 (349)
Q Consensus 349 ~ 349 (349)
.
T Consensus 281 ~ 281 (342)
T d1yfqa_ 281 Q 281 (342)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.97 E-value=7.7e-29 Score=210.40 Aligned_cols=308 Identities=10% Similarity=-0.015 Sum_probs=202.1
Q ss_pred ceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCccc--ceeeccCcccce
Q 018858 29 GFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWR--PLESYNYNKEEI 106 (349)
Q Consensus 29 ~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~v 106 (349)
.++++.+.||+|++||+.+++.+.+++.|. .+..++|+|||+++++++.|+.|++||+.+++... .+.....|...+
T Consensus 33 ~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~ 111 (426)
T d1hzua2 33 LFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVE 111 (426)
T ss_dssp EEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEE
T ss_pred EEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceE
Confidence 356788899999999999999999999774 58999999999999999999999999999875432 223333455566
Q ss_pred EEEEEccCCCEEEE-EcCCCcEEEEEcCCceEeceeccccccce-----------eEEEEccCCCCCCC--CCCC-----
Q 018858 107 NQIVCNPKSSFLAC-ADDGGDVKIIDIRQHCLYKSLRAGHSSIC-----------SSVQFIPWKPWEGL--PENN----- 167 (349)
Q Consensus 107 ~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~v-----------~~~~~~~~~~~~~~--~~~~----- 167 (349)
.+++|+|||+++++ +..++.+++||..++++...+. .+...+ ..+.+++++..... .+..
T Consensus 112 ~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~ 190 (426)
T d1hzua2 112 SSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVS-TRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLV 190 (426)
T ss_dssp ECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEE-CCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred EeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEee-ccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEE
Confidence 77788899998755 4578999999999988776665 444333 33444444332110 0000
Q ss_pred -C------CCccccCCceeEEeecCcccccCCCCcEEEEEc-CCCeEEEEEccCceeeeecCCCC-CCccceee------
Q 018858 168 -G------NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESELNISRSKSTT-KPLKGSQS------ 232 (349)
Q Consensus 168 -~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~~~------ 232 (349)
. .....-....+..+++.| ++++++++. .+..+.+++..+.+......... ........
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (426)
T d1hzua2 191 NYKDIDNLTVTSIGAAPFLADGGWDS------SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKY 264 (426)
T ss_dssp ECSSSSSCEEEEEECCSSEEEEEECT------TSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTT
T ss_pred EeccccceeeEEeccCCccEeeeECC------CCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCC
Confidence 0 001112234456777777 788776665 66789999999887765443221 11112222
Q ss_pred -------eeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEE-------eeCCCeEEEEecCC
Q 018858 233 -------TSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLIS-------GGNDKLVKVWDCSR 298 (349)
Q Consensus 233 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s-------~~~d~~i~vwd~~~ 298 (349)
.++++...+.............+....+.+|...+..++|+ |++++|++ ++.|++|+|||+.+
T Consensus 265 ~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~s---Pdg~~l~v~~~~~~s~~~~~tv~vwd~~t 341 (426)
T d1hzua2 265 GPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTH---PKSSHLYVDTTFNPDARISQSVAVFDLKN 341 (426)
T ss_dssp EEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECC---TTCSEEEECCTTCSSHHHHTCEEEEETTC
T ss_pred CceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcC---CCCceEEEeecCCCCcccCCEEEEEECCC
Confidence 22233332211111111122345667888999999999999 99999994 55689999999998
Q ss_pred CcceecccccceeeeccccccceEEEEeecCCCCcEE-Ee----eCCCeEEEeeC
Q 018858 299 FQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLV-VC----DTSKVVKVYSI 348 (349)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~----~~dg~i~iw~~ 348 (349)
++......+.........|...+..++|+| ||++++ ++ +.||.|+|||.
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~rv~~~~fSp-DGk~i~vs~~~~~~~~~~i~v~D~ 395 (426)
T d1hzua2 342 LDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNGKNDSSALVVVDD 395 (426)
T ss_dssp TTSCCEEECHHHHHCCCSSCCCEEEEEECS-SSSEEEEEECCCTTSCCEEEEEET
T ss_pred CCcCeEEeccchhcccCCCCccEEEEEECC-CCCEEEEEEecCCCCCCeEEEEEC
Confidence 854321110011112335667799999988 887664 33 36899999995
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=4e-26 Score=183.23 Aligned_cols=229 Identities=13% Similarity=0.051 Sum_probs=167.2
Q ss_pred CcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcE
Q 018858 48 KDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDV 127 (349)
Q Consensus 48 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 127 (349)
.++++++++|..+|++++|+| |++|+.||+|++||+.++ ...|...|.+++++++ ..+++++.|+.+
T Consensus 3 ~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~--------~~~h~~~V~~~~~~~~-~~~~s~s~D~~v 69 (287)
T d1pgua2 3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM--------HQDHSNLIVSLDNSKA-QEYSSISWDDTL 69 (287)
T ss_dssp EEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE--------ECCCCSCEEEEECCST-TCCEEEETTTEE
T ss_pred cceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC--------CCCCCCCEEEEEecCC-CeEEEEeecccc
Confidence 467889999999999999987 999999999999998742 2457889999999875 467889999999
Q ss_pred EEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEE
Q 018858 128 KIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVD 207 (349)
Q Consensus 128 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 207 (349)
++|++...+ ....+..+++.+ ++..++++ .++.+.
T Consensus 70 ~~w~~~~~~--------~~~~~~~~~~~~------------------------------------~~~~~~~~-~~~~~~ 104 (287)
T d1pgua2 70 KVNGITKHE--------FGSQPKVASANN------------------------------------DGFTAVLT-NDDDLL 104 (287)
T ss_dssp EETTEEEEE--------CSSCEEEEEECS------------------------------------SSEEEEEE-TTSEEE
T ss_pred ccccccccc--------cccceeeeeecc------------------------------------CCceEEEe-ecccce
Confidence 999975432 223456677776 55555544 455677
Q ss_pred EEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeec----Cceeeeeeee-ecCCCcceEEEEEeeecCCccEE
Q 018858 208 VINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQS----GGKRLHLDYS-VGGHTAAASCVAFSMFGERGKYL 282 (349)
Q Consensus 208 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~h~~~i~~i~~~~~~~~~~~l 282 (349)
+|+..++......... ....++++++..+++.+..+.. .......... ...|...+++++|+ |++.+|
T Consensus 105 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s---~~~~~l 177 (287)
T d1pgua2 105 ILQSFTGDIIKSVRLN----SPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISIS---PSETYI 177 (287)
T ss_dssp EEETTTCCEEEEEECS----SCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEEC---TTSSEE
T ss_pred eeeccceeeeeecccc----ceeeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEec---cCcccc
Confidence 8887776655443322 2345667777777643322111 1112222222 33477889999999 899999
Q ss_pred EEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeec---------CCCCcEEEeeCCCeEEEeeCC
Q 018858 283 ISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTP---------TESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 283 ~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---------~~~~~l~~~~~dg~i~iw~~~ 349 (349)
++|+.||.|++||+.+++ ........|...|.+++|+| .++.+|++++.|+.|++||++
T Consensus 178 ~~g~~dg~i~i~d~~~~~--------~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~ 245 (287)
T d1pgua2 178 AAGDVMGKILLYDLQSRE--------VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK 245 (287)
T ss_dssp EEEETTSCEEEEETTTTE--------EEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESS
T ss_pred ccccccccccceeecccc--------cccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECC
Confidence 999999999999999873 23345678999999999987 245689999999999999973
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=4.4e-25 Score=176.95 Aligned_cols=232 Identities=13% Similarity=0.170 Sum_probs=165.9
Q ss_pred EEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEE
Q 018858 51 QLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKII 130 (349)
Q Consensus 51 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 130 (349)
+.....|...|+|++ +++++|++|+.||.|+|||++++ +.+..+.+|...|++++| ++++|++|+.|+.|++|
T Consensus 8 i~~~~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~---~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~ 80 (293)
T d1p22a2 8 IHCRSETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTL---ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVW 80 (293)
T ss_dssp EECCCSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSC---CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEE
T ss_pred EeccCCCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCC---cEEEEEecCCCCEeeeec--ccceeeccccccccccc
Confidence 444556778898865 47899999999999999999876 445667788999999887 56799999999999999
Q ss_pred EcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEE
Q 018858 131 DIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVIN 210 (349)
Q Consensus 131 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d 210 (349)
++..+....... ...... ..+.+ ....++++..++.+.+|+
T Consensus 81 ~~~~~~~~~~~~-~~~~~~--~~~~~------------------------------------~~~~~~~~~~~~~~~~~~ 121 (293)
T d1p22a2 81 DVNTGEMLNTLI-HHCEAV--LHLRF------------------------------------NNGMMVTCSKDRSIAVWD 121 (293)
T ss_dssp ESSSCCEEEEEC-CCCSCE--EEEEC------------------------------------CTTEEEEEETTSCEEEEE
T ss_pred cccccccccccc-cccccc--ccccc------------------------------------cccceeecccccceeEee
Confidence 999887766655 333222 22333 456788999999999999
Q ss_pred ccCceeeeec--CCCCCCccceeeeeccccEEEEeeeeeec----CceeeeeeeeecCCCcceEEEEEeeecCCccEEEE
Q 018858 211 IESELNISRS--KSTTKPLKGSQSTSKVNIRDAEMEILDQS----GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLIS 284 (349)
Q Consensus 211 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s 284 (349)
.......... .......+....+.++ .+++ +..+.. .....+.+..+.+|...+..+.++ +.++++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~-~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~-----~~~l~~ 193 (293)
T d1p22a2 122 MASPTDITLRRVLVGHRAAVNVVDFDDK--YIVS-ASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR-----DRLVVS 193 (293)
T ss_dssp CSSSSCCEEEEEECCCSSCEEEEEEETT--EEEE-EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE-----TTEEEE
T ss_pred ccccccccccccccccccccccceeccc--cccc-ccCCCceeeecCCCCcEEEEEcccccccccccCC-----CCeEEE
Confidence 9875432221 2222333333343333 2322 111111 122335566777888888877765 568999
Q ss_pred eeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 285 GGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 285 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
++.|+.|++||+++. ..+....+|...+..+.. ++.+|++++.||.|++||+
T Consensus 194 ~~~dg~i~i~d~~~~---------~~~~~~~~~~~~v~~~~~---~~~~l~sg~~dg~i~iwd~ 245 (293)
T d1p22a2 194 GSSDNTIRLWDIECG---------ACLRVLEGHEELVRCIRF---DNKRIVSGAYDGKIKVWDL 245 (293)
T ss_dssp EETTSCEEEEETTTC---------CEEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEEH
T ss_pred ecCCCEEEEEecccc---------eeeeeecccceeeeeccc---cceEEEEEcCCCEEEEEEC
Confidence 999999999999987 566677778887776543 6669999999999999985
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.94 E-value=6.2e-24 Score=171.28 Aligned_cols=259 Identities=14% Similarity=0.117 Sum_probs=188.2
Q ss_pred EEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEE-EEeCCCeEEEEEccCCCcccceeeccCcccceEEE
Q 018858 31 VASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDII-YVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQI 109 (349)
Q Consensus 31 l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~ 109 (349)
.++++.|++|.+||+++++.+.+++.. ..+..++|+|+|++|+ +++.++.|.+||+.+++... .+..+ ..+..+
T Consensus 5 yV~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~---~~~~~-~~~~~~ 79 (301)
T d1l0qa2 5 YIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIA---TVPAG-SSPQGV 79 (301)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEE---EEECS-SSEEEE
T ss_pred EEEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceee---eeecc-cccccc
Confidence 446778999999999999999888754 4578999999999875 56678999999999865443 33333 457889
Q ss_pred EEccCCCEEE-EEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCccc
Q 018858 110 VCNPKSSFLA-CADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDAD 188 (349)
Q Consensus 110 ~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (349)
++++++..++ ++..++.+.+|+..+++....+. +.....++.|+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-------------------------------- 125 (301)
T d1l0qa2 80 AVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK--TGKSPLGLALSP-------------------------------- 125 (301)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECT--------------------------------
T ss_pred ccccccccccccccccceeeecccccceeeeecc--ccccceEEEeec--------------------------------
Confidence 9999997654 56677889999999998888877 445678899999
Q ss_pred ccCCCCcEE-EEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecC----ceeeeeeeeecCC
Q 018858 189 MLDKTNKIC-VVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSG----GKRLHLDYSVGGH 263 (349)
Q Consensus 189 ~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~h 263 (349)
+++.+ +++..++.+.+|+..+.......... .....++++++++.+++........ ........... .
T Consensus 126 ----dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 198 (301)
T d1l0qa2 126 ----DGKKLYVTNNGDKTVSVINTVTKAVINTVSVG--RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-V 198 (301)
T ss_dssp ----TSSEEEEEETTTTEEEEEETTTTEEEEEEECC--SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-C
T ss_pred ----CCCeeeeeeccccceeeeeccccceeeecccC--CCceEEEeeccccceeeecccccccccccccceeeeeccc-c
Confidence 56655 56667889999999987766654433 3456789999999887543221111 11112222333 2
Q ss_pred CcceEEEEEeeecCCccEEEEee---CCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcE-EEeeC
Q 018858 264 TAAASCVAFSMFGERGKYLISGG---NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENL-VVCDT 339 (349)
Q Consensus 264 ~~~i~~i~~~~~~~~~~~l~s~~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~ 339 (349)
...+..+.++ ++++.++.++ .++.|++||+.++ +++..+ .+...+.+++|+| ||++| ++++.
T Consensus 199 ~~~~~~~~~~---~~g~~~~v~~~~~~~~~v~v~D~~t~---------~~~~~~-~~~~~~~~va~sp-dg~~l~va~~~ 264 (301)
T d1l0qa2 199 EAAPSGIAVN---PEGTKAYVTNVDKYFNTVSMIDTGTN---------KITARI-PVGPDPAGIAVTP-DGKKVYVALSF 264 (301)
T ss_dssp SSEEEEEEEC---TTSSEEEEEEECSSCCEEEEEETTTT---------EEEEEE-ECCSSEEEEEECT-TSSEEEEEETT
T ss_pred cCCcceeecc---ccccccccccccceeeeeeeeecCCC---------eEEEEE-cCCCCEEEEEEeC-CCCEEEEEECC
Confidence 3456788898 8888776554 3478999999987 444333 3345689999988 88776 56678
Q ss_pred CCeEEEeeCC
Q 018858 340 SKVVKVYSIS 349 (349)
Q Consensus 340 dg~i~iw~~~ 349 (349)
|+.|++||++
T Consensus 265 ~~~i~v~D~~ 274 (301)
T d1l0qa2 265 CNTVSVIDTA 274 (301)
T ss_dssp TTEEEEEETT
T ss_pred CCeEEEEECC
Confidence 9999999974
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.94 E-value=7.4e-26 Score=187.38 Aligned_cols=153 Identities=10% Similarity=0.039 Sum_probs=126.9
Q ss_pred eEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCC--eEEEEEccCCCcccce
Q 018858 19 TCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGK--EVKSFDVHMPASWRPL 96 (349)
Q Consensus 19 ~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~ 96 (349)
..-.|||.+|+++++++ +|.|++||++.+..++. .|...|.+++|+|+|++|++++.+. .|++||+++++ .
T Consensus 6 ~~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~----~ 78 (360)
T d1k32a3 6 FAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK----A 78 (360)
T ss_dssp GEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC----E
T ss_pred hcccccCCCCCEEEEEE-CCeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc----E
Confidence 34679993389999887 47999999988876653 5899999999999999998877553 79999998753 2
Q ss_pred eeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCC
Q 018858 97 ESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNP 176 (349)
Q Consensus 97 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (349)
..+..|...+.+++|+|++++|++++.++.+++|++.+++....+. .+...+.+++|+|
T Consensus 79 ~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~sp-------------------- 137 (360)
T d1k32a3 79 EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER-SREAMITDFTISD-------------------- 137 (360)
T ss_dssp EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSSCCCCEEECT--------------------
T ss_pred EEeeCCCceEEeeeecccccccceeccccccccccccccceeeeee-cccccccchhhcc--------------------
Confidence 3445577899999999999999999999999999999999888888 7888899999999
Q ss_pred ceeEEeecCcccccCCCCcEEEEE----------cCCCeEEEEEccCce
Q 018858 177 AFVHAIAIPDADMLDKTNKICVVA----------KGDGVVDVINIESEL 215 (349)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~~----------~~dg~i~i~d~~~~~ 215 (349)
++++|+.+ ..++.+++||+.+++
T Consensus 138 ----------------dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~ 170 (360)
T d1k32a3 138 ----------------NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK 170 (360)
T ss_dssp ----------------TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred ----------------ceeeeeeeccccccceeeccccceeeeccccCc
Confidence 67777754 344578999998754
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.94 E-value=1.3e-24 Score=183.81 Aligned_cols=289 Identities=11% Similarity=-0.009 Sum_probs=189.7
Q ss_pred ceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcc--cceeeccCcccce
Q 018858 29 GFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASW--RPLESYNYNKEEI 106 (349)
Q Consensus 29 ~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~v 106 (349)
-++++.+.+|+|.+||..+++.+..+..+ ..+..++|+|||+++++++.|+.|.+||+.+++.. ..+.....+...+
T Consensus 33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~ 111 (432)
T d1qksa2 33 LFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIE 111 (432)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEE
T ss_pred EEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeE
Confidence 44689999999999999999999999877 46999999999999999999999999999876532 2233333455566
Q ss_pred EEEEEccCCCEE-EEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecC
Q 018858 107 NQIVCNPKSSFL-ACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIP 185 (349)
Q Consensus 107 ~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (349)
.+.+|+|||++| +++..++.|++||..+++++..+. .+...+....+.++ .....+.++
T Consensus 112 ~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~-~~~~~~~~~~~~~~-------------------~~~~~v~~s 171 (432)
T d1qksa2 112 TSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQS-TRGMTYDEQEYHPE-------------------PRVAAILAS 171 (432)
T ss_dssp ECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEE-CCEECTTTCCEESC-------------------CCEEEEEEC
T ss_pred EecccCCCCCEEEEEcCCCCeEEEEeCccccceeeec-cCCccccceeccCC-------------------CceeEEEEC
Confidence 667788999976 678889999999999999888776 55444443334332 112333334
Q ss_pred cccccCCCCcEE-EEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeee-------ecCce-----
Q 018858 186 DADMLDKTNKIC-VVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD-------QSGGK----- 252 (349)
Q Consensus 186 ~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~----- 252 (349)
+ ++..+ ++...++.|.+||....+...............++++|+|+++++..... .....
T Consensus 172 ~------dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~ 245 (432)
T d1qksa2 172 H------YRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIE 245 (432)
T ss_dssp S------SSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred C------CCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEe
Confidence 3 66655 55667899999999876654443334455677899999999887622111 00000
Q ss_pred --------------------------------eeeee----eeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEec
Q 018858 253 --------------------------------RLHLD----YSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDC 296 (349)
Q Consensus 253 --------------------------------~~~~~----~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~ 296 (349)
..... .....|...+....++ +++..+++++.+...++|+.
T Consensus 246 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~---~~g~~~~~~s~p~~~~lw~~ 322 (432)
T d1qksa2 246 DTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPA---LGGGSLFIKTHPNSQYLYVD 322 (432)
T ss_dssp ECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC---SCSCCCCEECCTTCSEEEEE
T ss_pred ccCccccccCcccceecCCCCceecccccCCceEEecccccccccccccEEEEEEEc---CCCCeEEEEecCCccceeec
Confidence 00000 0011223345556666 67777777777777777765
Q ss_pred CCCcceec---------------cccccee--------eeccccccceEEEEeecCCCCcEEEee-----CCCeEEEeeC
Q 018858 297 SRFQGVQT---------------SINNDLL--------IKNINLNKKVNWLCTTPTESENLVVCD-----TSKVVKVYSI 348 (349)
Q Consensus 297 ~~~~~~~~---------------~~~~~~~--------~~~~~~~~~v~~~~~~~~~~~~l~~~~-----~dg~i~iw~~ 348 (349)
........ ....+.+ ..+..|...+..++|+| ||++++.+. .+|.|+|||-
T Consensus 323 ~~~~~~~~~~~sv~vpDg~~la~~s~d~~~k~w~~~~~~~l~~~~~~v~~~~fS~-DG~~v~~S~~~~~~~~g~i~i~D~ 401 (432)
T d1qksa2 323 ATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNK-DGTEVWFSVWNGKDQESALVVVDD 401 (432)
T ss_dssp CTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECT-TSSEEEEEEECCTTSCCEEEEEET
T ss_pred ccCCCCCCeeeEEEEEechhhcccccCCceEecccccccccCCCCCcEEEeEECC-CCCEEEEEEecCCCCCCcEEEEEC
Confidence 44221100 0000001 11235677899999988 888775553 4789999985
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.93 E-value=8.6e-24 Score=173.14 Aligned_cols=263 Identities=8% Similarity=0.021 Sum_probs=182.6
Q ss_pred ceEEEeCCCCcEEEEECCCCcEEEEeecC--CCCeEEEEEecCCCEEE-EEeCCCeEEEEEccCCCcccceeecc--Ccc
Q 018858 29 GFVASSGEDGCICWFDLRSKDVQLVTDVG--NGPVTSLCFKSGNEDII-YVSSGKEVKSFDVHMPASWRPLESYN--YNK 103 (349)
Q Consensus 29 ~~l~t~~~dg~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~ 103 (349)
+++++++.|++|++||+++++.+.++..+ ...+..++|+|+|++++ +++.++.|.+||+.+++....+.... .+.
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~ 81 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence 58999999999999999999999888754 45578999999999875 56778999999999876554433221 112
Q ss_pred cceEEEEEccCCCEEEEEcC------------CCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCc
Q 018858 104 EEINQIVCNPKSSFLACADD------------GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAG 171 (349)
Q Consensus 104 ~~v~~~~~~~~~~~l~~~~~------------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 171 (349)
..+..++|+|++++++++.. +..+.+||..+++....+. ....+..++|+|
T Consensus 82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~s~--------------- 144 (337)
T d1pbyb_ 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE--APRQITMLAWAR--------------- 144 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE--CCSSCCCEEECT---------------
T ss_pred cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecc--ccCCceEEEEcC---------------
Confidence 34567899999999887753 5678999999999888887 455688899999
Q ss_pred cccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEE----------
Q 018858 172 QCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA---------- 241 (349)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 241 (349)
+++++++++.+ +.+||..+++.......... .....+++++..+.
T Consensus 145 ---------------------dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 199 (337)
T d1pbyb_ 145 ---------------------DGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSW--EAETYAQPDVLAVWNQHESSGVMA 199 (337)
T ss_dssp ---------------------TSSCEEEESSS--EEEEETTTTEEEEEECSTTT--TTTTBCCCBCCCCCCCCTTTTEEE
T ss_pred ---------------------CCCEEEEEcCC--cceeeeecCcEEEEeecCCc--cccceecCCcceeeccccccceee
Confidence 78888888654 67899988776654433211 11112222221111
Q ss_pred ---EeeeeeecCc--------------eeee-eeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCccee
Q 018858 242 ---EMEILDQSGG--------------KRLH-LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQ 303 (349)
Q Consensus 242 ---~~~~~~~~~~--------------~~~~-~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 303 (349)
....++.... .... ....+..+...+..+.++ +++.+++.+ ++.|++||+.++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~i~v~d~~~~---- 270 (337)
T d1pbyb_ 200 TPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVN---PAKTRAFGA--YNVLESFDLEKN---- 270 (337)
T ss_dssp EEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEEC---TTSSEEEEE--ESEEEEEETTTT----
T ss_pred eeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEec---ccceEEEEc--cccEEEEECCCC----
Confidence 0000000000 0000 111233455566777777 788888766 589999999997
Q ss_pred cccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 304 TSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 304 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
+.+... .+...+.+++|+| ||++|++++.|+.|++||..
T Consensus 271 -----~~~~~~-~~~~~~~~~~~s~-dG~~l~v~~~~~~i~v~D~~ 309 (337)
T d1pbyb_ 271 -----ASIKRV-PLPHSYYSVNVST-DGSTVWLGGALGDLAAYDAE 309 (337)
T ss_dssp -----EEEEEE-ECSSCCCEEEECT-TSCEEEEESBSSEEEEEETT
T ss_pred -----cEEEEE-cCCCCEEEEEECC-CCCEEEEEeCCCcEEEEECC
Confidence 333332 4566789999988 89999999999999999963
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.92 E-value=3.3e-23 Score=170.21 Aligned_cols=272 Identities=8% Similarity=-0.038 Sum_probs=180.7
Q ss_pred EEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeec-CCCCeEEEEEecCCCEEEE-EeCCCeEEEEEccCCCcccceee
Q 018858 21 CIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDV-GNGPVTSLCFKSGNEDIIY-VSSGKEVKSFDVHMPASWRPLES 98 (349)
Q Consensus 21 ~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~ 98 (349)
++|+++ +++|++++.+++|.+||+.+++.+.+++. +...+.+++|+|||+++++ +..++.|.+||+.+++....+..
T Consensus 2 ~a~~~~-~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~ 80 (346)
T d1jmxb_ 2 PALKAG-HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 80 (346)
T ss_dssp CCCCTT-CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred ccCCCC-CcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecc
Confidence 467887 89999999999999999999999988874 5667889999999998754 55789999999998754433332
Q ss_pred ccC---cccceEEEEEccCCCEEEEEc------------CCCcEEEEEcCCceEeceecc-ccccceeEEEEccCCCCCC
Q 018858 99 YNY---NKEEINQIVCNPKSSFLACAD------------DGGDVKIIDIRQHCLYKSLRA-GHSSICSSVQFIPWKPWEG 162 (349)
Q Consensus 99 ~~~---~~~~v~~~~~~~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~ 162 (349)
... +...+..++|+|+|+++++++ .++.+.+||..+++....+.. .....+..+.+.+
T Consensus 81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 154 (346)
T d1jmxb_ 81 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD------ 154 (346)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECT------
T ss_pred cccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecC------
Confidence 111 112456789999999887765 366788888877665444330 1122344455554
Q ss_pred CCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEE
Q 018858 163 LPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAE 242 (349)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (349)
++..++.+ +.+.+|+..+++........ .....+.++|++..+..
T Consensus 155 ------------------------------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 199 (346)
T d1jmxb_ 155 ------------------------------DGSLYVAG---PDIYKMDVKTGKYTVALPLR--NWNRKGYSAPDVLYFWP 199 (346)
T ss_dssp ------------------------------TSCEEEES---SSEEEECTTTCCEEEEECST--TCCCTTBCCCBCCCCCC
T ss_pred ------------------------------CCEEEEeC---CcceEEEccCCCEEEEEecC--CCccceEEeccccEEEE
Confidence 55555432 45888998877665544322 22334445555443321
Q ss_pred ee-------------------------eeeecC----c-eeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEE
Q 018858 243 ME-------------------------ILDQSG----G-KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVK 292 (349)
Q Consensus 243 ~~-------------------------~~~~~~----~-~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~ 292 (349)
.. .....+ . ...........|...+..+.++ +++.+++.... +.|+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~v~ 275 (346)
T d1jmxb_ 200 HQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRS---PKDPNQIYGVL-NRLA 275 (346)
T ss_dssp CCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEEC---SSCTTEEEEEE-SEEE
T ss_pred EecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEe---CCCCEEEEecC-CeEE
Confidence 00 000000 0 0011122334566677888888 77777777664 5799
Q ss_pred EEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeCC
Q 018858 293 VWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSIS 349 (349)
Q Consensus 293 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 349 (349)
+||..++ +.+... .+...+.+++|+| ||++|++++.|+.|++||++
T Consensus 276 v~d~~~~---------~~~~~~-~~~~~~~~va~s~-DG~~l~v~~~d~~v~v~D~~ 321 (346)
T d1jmxb_ 276 KYDLKQR---------KLIKAA-NLDHTYYCVAFDK-KGDKLYLGGTFNDLAVFNPD 321 (346)
T ss_dssp EEETTTT---------EEEEEE-ECSSCCCEEEECS-SSSCEEEESBSSEEEEEETT
T ss_pred EEECCCC---------cEEEEE-cCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECc
Confidence 9999997 343333 3445789999988 89999999999999999974
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=4.5e-21 Score=156.64 Aligned_cols=273 Identities=11% Similarity=0.071 Sum_probs=177.5
Q ss_pred eEEEeCCCCcEEEEECCCCcEEEEe--ecCCCCeEEEEEecCCCEEEEEe-CCCeEEEEEccCCCcccceeeccCcccce
Q 018858 30 FVASSGEDGCICWFDLRSKDVQLVT--DVGNGPVTSLCFKSGNEDIIYVS-SGKEVKSFDVHMPASWRPLESYNYNKEEI 106 (349)
Q Consensus 30 ~l~t~~~dg~i~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~v 106 (349)
.+++++.+++|++|++.....+..+ ..|...+..++|+|+|++|++++ .|+.|++|++........+.........+
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p 85 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL 85 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence 4577888999999998754332222 24778899999999999996655 58999999998654332332222234567
Q ss_pred EEEEEccCCCEEEEEcC-CCcEEEEEcCCceEeceec-cccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeec
Q 018858 107 NQIVCNPKSSFLACADD-GGDVKIIDIRQHCLYKSLR-AGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAI 184 (349)
Q Consensus 107 ~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (349)
..++|+|+|++|++++. ++.|.+|+........... ..+...+.++.++|
T Consensus 86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~---------------------------- 137 (333)
T d1ri6a_ 86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP---------------------------- 137 (333)
T ss_dssp SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT----------------------------
T ss_pred eEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeee----------------------------
Confidence 78999999999988874 6789999887654433322 13556677888888
Q ss_pred CcccccCCCCcEEEEEc-CCCeEEEEEccCceeee-----ecCCCCCCccceeeeeccccEEEEeeeee----ec---C-
Q 018858 185 PDADMLDKTNKICVVAK-GDGVVDVINIESELNIS-----RSKSTTKPLKGSQSTSKVNIRDAEMEILD----QS---G- 250 (349)
Q Consensus 185 ~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~- 250 (349)
+++++++++ .+..|.+|+........ ............++|++++..+....... .. .
T Consensus 138 --------d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~ 209 (333)
T d1ri6a_ 138 --------DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDP 209 (333)
T ss_dssp --------TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCT
T ss_pred --------cceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeeccc
Confidence 677766665 56689999987643222 12223344557889999998876532111 00 0
Q ss_pred ---ceeeeeeeeec---CCCcceEEEEEeeecCCccEEEEe-eCCCeEEEEecCCCcceecccccceeeeccccccceEE
Q 018858 251 ---GKRLHLDYSVG---GHTAAASCVAFSMFGERGKYLISG-GNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNW 323 (349)
Q Consensus 251 ---~~~~~~~~~~~---~h~~~i~~i~~~~~~~~~~~l~s~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 323 (349)
........... ........+.++ +++++++.. ..++.+.+|++...... ............+..
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s---~d~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~p~~ 280 (333)
T d1ri6a_ 210 HGNIECVQTLDMMPENFSDTRWAADIHIT---PDGRHLYACDRTASLITVFSVSEDGSV------LSKEGFQPTETQPRG 280 (333)
T ss_dssp TSCCEEEEEEECSCTTCCSCCCEEEEEEC---TTSSEEEEEETTTTEEEEEEECTTSCC------EEEEEEEECSSSCCC
T ss_pred ccceeeeeeeeeeecCCCccccceeEEEe---cccCceeeecccCCeEEEEEEcCCCCE------EEEEEEeCCCCCeeE
Confidence 00111111111 123456678888 888876655 56789999998765321 112222334456788
Q ss_pred EEeecCCCCcEEEee-CCCeEEEeeC
Q 018858 324 LCTTPTESENLVVCD-TSKVVKVYSI 348 (349)
Q Consensus 324 ~~~~~~~~~~l~~~~-~dg~i~iw~~ 348 (349)
++|+| ||++|++++ .++.|++|++
T Consensus 281 ~a~sp-DGk~l~va~~~~~~v~v~~i 305 (333)
T d1ri6a_ 281 FNVDH-SGKYLIAAGQKSHHISVYEI 305 (333)
T ss_dssp EEECT-TSSEEEEECTTTCEEEEEEE
T ss_pred EEEeC-CCCEEEEEECCCCeEEEEEE
Confidence 99988 898887775 5689999964
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.89 E-value=7.1e-20 Score=147.16 Aligned_cols=247 Identities=10% Similarity=0.096 Sum_probs=179.4
Q ss_pred ccCCCCeeeeCCceeeeEEEEecCCCceE-EEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEE-eCCC
Q 018858 3 DAEAKPRRLRGHKATATCCIASRDRPGFV-ASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYV-SSGK 80 (349)
Q Consensus 3 ~~~~~~~~l~~h~~~i~~~~~~~~~~~~l-~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg 80 (349)
.+++.+++++.. .....++|+|+ +++| ++++.++.|++||+.+++.+..+..+. .+..++|++++..+++. ..++
T Consensus 20 ~t~~~~~~i~~g-~~p~~va~spd-G~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 96 (301)
T d1l0qa2 20 TSNKVTATIPVG-SNPMGAVISPD-GTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASS 96 (301)
T ss_dssp TTTEEEEEEECS-SSEEEEEECTT-SSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTT
T ss_pred CCCeEEEEEECC-CCceEEEEeCC-CCEEEEEECCCCEEEEEECCCCceeeeeeccc-cccccccccccccccccccccc
Confidence 356677777754 44678999999 6765 577788999999999999999888765 46889999999876654 5677
Q ss_pred eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEE-EEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCC
Q 018858 81 EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLA-CADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKP 159 (349)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 159 (349)
.+.+|+..+++....+.. .....++.++|++..++ ++..++.+.+|+..+.+....+. +...+..+.++|
T Consensus 97 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--- 167 (301)
T d1l0qa2 97 TLSVIDTTSNTVAGTVKT----GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS--VGRSPKGIAVTP--- 167 (301)
T ss_dssp EEEEEETTTTEEEEEEEC----SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CCSSEEEEEECT---
T ss_pred eeeecccccceeeeeccc----cccceEEEeecCCCeeeeeeccccceeeeeccccceeeecc--cCCCceEEEeec---
Confidence 999999987643333322 35678899999998765 55668889999999998888877 445678889988
Q ss_pred CCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEc-CCCeEEEEEccCceeeeecCCCCCCccceeeeecccc
Q 018858 160 WEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNI 238 (349)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (349)
++..++++. .++.+.+|+............. .....+++++++.
T Consensus 168 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~ 212 (301)
T d1l0qa2 168 ---------------------------------DGTKVYVANFDSMSISVIDTVTNSVIDTVKVE--AAPSGIAVNPEGT 212 (301)
T ss_dssp ---------------------------------TSSEEEEEETTTTEEEEEETTTTEEEEEEECS--SEEEEEEECTTSS
T ss_pred ---------------------------------cccceeeecccccccccccccceeeeeccccc--CCcceeecccccc
Confidence 666666665 4567778888776554443322 3456788999999
Q ss_pred EEEEeeeee--e----cCceeeeeeeeecCCCcceEEEEEeeecCCccEE-EEeeCCCeEEEEecCCCc
Q 018858 239 RDAEMEILD--Q----SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYL-ISGGNDKLVKVWDCSRFQ 300 (349)
Q Consensus 239 ~~~~~~~~~--~----~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l-~s~~~d~~i~vwd~~~~~ 300 (349)
.+++..... . ......+....+.. ...+.+++|+ |||++| ++++.|+.|++||+++++
T Consensus 213 ~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~va~s---pdg~~l~va~~~~~~i~v~D~~t~~ 277 (301)
T d1l0qa2 213 KAYVTNVDKYFNTVSMIDTGTNKITARIPV-GPDPAGIAVT---PDGKKVYVALSFCNTVSVIDTATNT 277 (301)
T ss_dssp EEEEEEECSSCCEEEEEETTTTEEEEEEEC-CSSEEEEEEC---TTSSEEEEEETTTTEEEEEETTTTE
T ss_pred ccccccccceeeeeeeeecCCCeEEEEEcC-CCCEEEEEEe---CCCCEEEEEECCCCeEEEEECCCCe
Confidence 887532211 1 11122334444443 3467899999 899976 577789999999999984
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.88 E-value=1.2e-21 Score=165.64 Aligned_cols=157 Identities=10% Similarity=-0.029 Sum_probs=116.1
Q ss_pred ccCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcE--EEEee---cCCCCeEEEEEecCCCEE-EEE
Q 018858 3 DAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDV--QLVTD---VGNGPVTSLCFKSGNEDI-IYV 76 (349)
Q Consensus 3 ~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~--~~~~~---~~~~~v~~~~~~~~~~~l-~~~ 76 (349)
.+++.++++..|. .+..++|+|| |+++++++.||.+++||+.+++. ...++ .|...+.+.+|+|||++| +++
T Consensus 50 ~t~~v~~~~~~g~-~~~~v~fSpD-G~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~ 127 (432)
T d1qksa2 50 STYEIKTVLDTGY-AVHISRLSAS-GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGA 127 (432)
T ss_dssp TTCCEEEEEECSS-CEEEEEECTT-SCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEE
T ss_pred CCCcEEEEEeCCC-CeeEEEECCC-CCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEc
Confidence 3678889998774 6899999998 89999999999999999987663 33333 344555666778899986 567
Q ss_pred eCCCeEEEEEccCCCcccceeec--------cCcccceEEEEEccCCCEE-EEEcCCCcEEEEEcCCceEeceecccccc
Q 018858 77 SSGKEVKSFDVHMPASWRPLESY--------NYNKEEINQIVCNPKSSFL-ACADDGGDVKIIDIRQHCLYKSLRAGHSS 147 (349)
Q Consensus 77 ~~dg~i~iwd~~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 147 (349)
..++.|++||..+++....+... ..+......+.++|++..+ ++...++.|.+||..+.+........+..
T Consensus 128 ~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~ 207 (432)
T d1qksa2 128 YWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAER 207 (432)
T ss_dssp EETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCS
T ss_pred CCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccC
Confidence 78999999999987644433211 1123456678899998765 56677899999999877654332212556
Q ss_pred ceeEEEEccCCCCC
Q 018858 148 ICSSVQFIPWKPWE 161 (349)
Q Consensus 148 ~v~~~~~~~~~~~~ 161 (349)
.+..++|+|++.++
T Consensus 208 ~~~~~~~spdg~~~ 221 (432)
T d1qksa2 208 FLHDGGLDGSHRYF 221 (432)
T ss_dssp SEEEEEECTTSCEE
T ss_pred ccccceECCCCCEE
Confidence 78899999998765
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.87 E-value=2.2e-21 Score=164.09 Aligned_cols=256 Identities=10% Similarity=-0.003 Sum_probs=160.8
Q ss_pred ccCCCCeeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEE--Eee---cCCCCeEEEEEecCCCEEEEE-
Q 018858 3 DAEAKPRRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQL--VTD---VGNGPVTSLCFKSGNEDIIYV- 76 (349)
Q Consensus 3 ~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~--~~~---~~~~~v~~~~~~~~~~~l~~~- 76 (349)
.+++.+++|+.|. .+..++|+|| |++|++++.|+.+++||+.+++... .++ +|...+.+++|+|+|++++++
T Consensus 50 ~t~~~~~~l~~g~-~~~~vafSPD-Gk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~ 127 (426)
T d1hzua2 50 DSKKIVKVIDTGY-AVHISRMSAS-GRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGA 127 (426)
T ss_dssp TTCSEEEEEECCS-SEEEEEECTT-SCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEE
T ss_pred CCCcEEEEEeCCC-CeeEEEECCC-CCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEee
Confidence 3678889999875 5899999998 8999999999999999999887533 332 344556677788999987655
Q ss_pred eCCCeEEEEEccCCCcccceeec--------cCcccceEEEEEccCCCEEEEEc-CCCcEEEEEcCCceEeceecccccc
Q 018858 77 SSGKEVKSFDVHMPASWRPLESY--------NYNKEEINQIVCNPKSSFLACAD-DGGDVKIIDIRQHCLYKSLRAGHSS 147 (349)
Q Consensus 77 ~~dg~i~iwd~~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~ 147 (349)
..++.+.+||..++.....+... ..+......+..++++..++... ..+.+.+++......+..-...+..
T Consensus 128 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 207 (426)
T d1hzua2 128 YWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAP 207 (426)
T ss_dssp EESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCS
T ss_pred cCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCC
Confidence 47899999999876543332211 01223345566677776555433 3455666665544322211113555
Q ss_pred ceeEEEEccCCCCCCC--------------------------------------------------CCCC----------
Q 018858 148 ICSSVQFIPWKPWEGL--------------------------------------------------PENN---------- 167 (349)
Q Consensus 148 ~v~~~~~~~~~~~~~~--------------------------------------------------~~~~---------- 167 (349)
.+..+.|+|++.++.. .+..
T Consensus 208 ~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~ 287 (426)
T d1hzua2 208 FLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKN 287 (426)
T ss_dssp SEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTT
T ss_pred ccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccc
Confidence 6777777776543200 0000
Q ss_pred --CCCccc-----cCCceeEEeecCcccccCCCCcEEEE-------EcCCCeEEEEEccCceeeeecCCCCCCccceeee
Q 018858 168 --GNAGQC-----YNPAFVHAIAIPDADMLDKTNKICVV-------AKGDGVVDVINIESELNISRSKSTTKPLKGSQST 233 (349)
Q Consensus 168 --~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 233 (349)
...... -+...+..++++| ++++|++ +..+++|++||+++++........
T Consensus 288 ~~~~~~~~~~~l~g~~~~v~~v~~sP------dg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~---------- 351 (426)
T d1hzua2 288 HPQYAWKKVAELQGQGGGSLFIKTHP------KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPI---------- 351 (426)
T ss_dssp CTTTBTSEEEEEECSSSCCCCEECCT------TCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECH----------
T ss_pred cccccceEeEEEecCCCceeEEEcCC------CCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEecc----------
Confidence 000000 0123456677777 8999985 456789999999875322111000
Q ss_pred eccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEE-e----eCCCeEEEEecCCCc
Q 018858 234 SKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLIS-G----GNDKLVKVWDCSRFQ 300 (349)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s-~----~~d~~i~vwd~~~~~ 300 (349)
.....+..|...+..++|+ |||++++. + +.|+.|+|||.++.+
T Consensus 352 ---------------------~~~~~~~~~~~rv~~~~fS---pDGk~i~vs~~~~~~~~~~i~v~D~~T~k 399 (426)
T d1hzua2 352 ---------------------AEWADLGEGAKRVVQPEYN---KRGDEVWFSVWNGKNDSSALVVVDDKTLK 399 (426)
T ss_dssp ---------------------HHHHCCCSSCCCEEEEEEC---SSSSEEEEEECCCTTSCCEEEEEETTTTE
T ss_pred ---------------------chhcccCCCCccEEEEEEC---CCCCEEEEEEecCCCCCCeEEEEECCCCe
Confidence 0011234466779999999 89987743 2 468999999999983
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.86 E-value=5.3e-20 Score=150.27 Aligned_cols=273 Identities=11% Similarity=0.008 Sum_probs=177.6
Q ss_pred cCCCCeeeeCC--ceeeeEEEEecCCCceE-EEeCCCCcEEEEECCCCcEEEEeecCCC-----CeEEEEEecCCCEEEE
Q 018858 4 AEAKPRRLRGH--KATATCCIASRDRPGFV-ASSGEDGCICWFDLRSKDVQLVTDVGNG-----PVTSLCFKSGNEDIIY 75 (349)
Q Consensus 4 ~~~~~~~l~~h--~~~i~~~~~~~~~~~~l-~t~~~dg~i~vwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~ 75 (349)
+++.++.+..+ ...+.+++|+|+ ++++ ++++.++.|.+||+.+++.+..+..+.. .+..++|+|+++++++
T Consensus 20 s~~~~~~i~~~~~~~~~~~i~~spD-g~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~ 98 (337)
T d1pbyb_ 20 KMAVDKVITIADAGPTPMVPMVAPG-GRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAI 98 (337)
T ss_dssp TTEEEEEEECTTCTTCCCCEEECTT-SSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEE
T ss_pred CCeEEEEEECCCCCCCccEEEECCC-CCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEE
Confidence 45667777653 345789999998 7776 5778899999999999999888876543 3446899999999988
Q ss_pred EeC------------CCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceecc
Q 018858 76 VSS------------GKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA 143 (349)
Q Consensus 76 ~~~------------dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 143 (349)
+.. +..+.+||..+++....+.. ...+..++|+|+++++++++. .+.+||..+++....+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~~- 171 (337)
T d1pbyb_ 99 YESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA----PRQITMLAWARDGSKLYGLGR--DLHVMDPEAGTLVEDKP- 171 (337)
T ss_dssp EEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC----CSSCCCEEECTTSSCEEEESS--SEEEEETTTTEEEEEEC-
T ss_pred eecCCcceeeeccccccceeeccccCCeEEEeccc----cCCceEEEEcCCCCEEEEEcC--CcceeeeecCcEEEEee-
Confidence 763 56788999987643333322 356788999999999998865 47889999998877776
Q ss_pred ccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCC
Q 018858 144 GHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKST 223 (349)
Q Consensus 144 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 223 (349)
.+ .......+.|++..... ................. +......+..++.+.+|+...+........+
T Consensus 172 ~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (337)
T d1pbyb_ 172 IQ-SWEAETYAQPDVLAVWN------QHESSGVMATPFYTARK------DIDPADPTAYRTGLLTMDLETGEMAMREVRI 238 (337)
T ss_dssp ST-TTTTTTBCCCBCCCCCC------CCTTTTEEEEEEEEEBT------TSCTTSGGGEEEEEEEEETTTCCEEEEEEEE
T ss_pred cC-CccccceecCCcceeec------cccccceeeeeeeeeee------ccceeeecccCccEEEEEcCCCcEEEEEecC
Confidence 22 22222333332211100 00000000000001111 1222233445567889999887766555555
Q ss_pred CCCccceeeeeccccEEEEeee-eeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcc
Q 018858 224 TKPLKGSQSTSKVNIRDAEMEI-LDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG 301 (349)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 301 (349)
.......+.+++++.+++.... .........+.+..+. +...+.+++|+ |||++|++++.|+.|+|||..+.+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s---~dG~~l~v~~~~~~i~v~D~~t~~~ 313 (337)
T d1pbyb_ 239 MDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVP-LPHSYYSVNVS---TDGSTVWLGGALGDLAAYDAETLEK 313 (337)
T ss_dssp CSSCEEEEEECTTSSEEEEEESEEEEEETTTTEEEEEEE-CSSCCCEEEEC---TTSCEEEEESBSSEEEEEETTTCCE
T ss_pred CCcceEEEEecccceEEEEccccEEEEECCCCcEEEEEc-CCCCEEEEEEC---CCCCEEEEEeCCCcEEEEECCCCcE
Confidence 5666777889999988875321 1111122223333333 45678899999 9999999999999999999999853
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.85 E-value=4.5e-18 Score=140.95 Aligned_cols=283 Identities=11% Similarity=-0.028 Sum_probs=176.2
Q ss_pred eeCCceeeeEEEEecCCCceEEEe-----CCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEe--------
Q 018858 11 LRGHKATATCCIASRDRPGFVASS-----GEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVS-------- 77 (349)
Q Consensus 11 l~~h~~~i~~~~~~~~~~~~l~t~-----~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------- 77 (349)
...+..++.+++++|+ ++.++.. +.++.+.+||..+++.+..+..+..+ .++|+|+|++|++++
T Consensus 16 ~~~~~~p~~~~a~spd-g~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~ 92 (373)
T d2madh_ 16 AGAADGPTNDEAPGAD-GRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAK 92 (373)
T ss_pred cccCCCCccccccCCC-CCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccc
Confidence 3468889999999999 6766543 23467999999999999888876544 789999999999875
Q ss_pred --CCCeEEEEEccCCCcccceeeccCc----ccceEEEEEccCCCEEEEE--cCCCcEEEEEcCCceEeceeccccccce
Q 018858 78 --SGKEVKSFDVHMPASWRPLESYNYN----KEEINQIVCNPKSSFLACA--DDGGDVKIIDIRQHCLYKSLRAGHSSIC 149 (349)
Q Consensus 78 --~dg~i~iwd~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~v 149 (349)
.++.|.+||..+++....+...... ......+.|+++++.++.. ..++.+.+|+....+...... ..
T Consensus 93 ~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 167 (373)
T d2madh_ 93 GKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLS-----SP 167 (373)
T ss_pred cccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEec-----cc
Confidence 3578999999987544333221110 0123457888988766554 345678899988776554433 35
Q ss_pred eEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCC-cEEEEEcCCCeEEEEEccCceeeeecCCC-----
Q 018858 150 SSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTN-KICVVAKGDGVVDVINIESELNISRSKST----- 223 (349)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----- 223 (349)
.++.++| ++ ..+++.+.|+.+.+|+.............
T Consensus 168 ~~~~~s~------------------------------------~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~ 211 (373)
T d2madh_ 168 TCYHIHP------------------------------------GAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAA 211 (373)
T ss_pred eeEEEec------------------------------------CCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccC
Confidence 6778888 44 45678889999999999876654432211
Q ss_pred CCCccceeeeeccccEEEEeee-----eeecCceeeeeeeeecCC----------CcceEEEEEee-------ecCCccE
Q 018858 224 TKPLKGSQSTSKVNIRDAEMEI-----LDQSGGKRLHLDYSVGGH----------TAAASCVAFSM-------FGERGKY 281 (349)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~h----------~~~i~~i~~~~-------~~~~~~~ 281 (349)
.........+++++..+..... .+.... ..........+ ......+.++| ...++..
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 290 (373)
T d2madh_ 212 QNLLTQPAQANKSGRIVWPVYSGKILQADISAA-GATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSA 290 (373)
T ss_pred ccceeeeEEECCCceEEEecCCceEEEEEcCCC-eEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCce
Confidence 1112233444455544442110 000000 00000111111 11222334441 0023334
Q ss_pred EEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCc--EEEeeCCCeEEEeeCC
Q 018858 282 LISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESEN--LVVCDTSKVVKVYSIS 349 (349)
Q Consensus 282 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--l~~~~~dg~i~iw~~~ 349 (349)
+++...++.+.+||..++ +.+. ...+...+..++|+| ||+. +++++.|+.|++||+.
T Consensus 291 ~~~~~~~~~v~~~d~~t~---------~~~~-~~~~~~~~~~~a~sp-DG~~~l~vt~~~d~~v~v~D~~ 349 (373)
T d2madh_ 291 WKLHAAAKEVTSVTGLVG---------QTSS-QISLGHDVDAISVAQ-DGGPDLYALSAGTEVLHIYDAG 349 (373)
T ss_pred EEeecCCCeEEEEECCCC---------cEEE-EecCCCCeeEEEECC-CCCEEEEEEeCCCCeEEEEECC
Confidence 455667788999999987 3333 334667789999988 7773 4677899999999974
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.84 E-value=1.3e-18 Score=143.18 Aligned_cols=286 Identities=12% Similarity=-0.048 Sum_probs=179.8
Q ss_pred eeEEEEecCCCceEEEe-----CCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEe----------CCCeE
Q 018858 18 ATCCIASRDRPGFVASS-----GEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVS----------SGKEV 82 (349)
Q Consensus 18 i~~~~~~~~~~~~l~t~-----~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i 82 (349)
+.-.+.+|+ ++.++.. ..++.+.+||..+++.+.++..+..+ .++|+|+|++|++++ .++.|
T Consensus 4 ~~~~a~spd-g~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v 80 (355)
T d2bbkh_ 4 RILEAPAPD-ARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYV 80 (355)
T ss_dssp CBCCCCCCC-TTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred cEeEeeCCC-CCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEE
Confidence 333456788 6666653 34567999999999999888876554 699999999988654 46899
Q ss_pred EEEEccCCCcccceeeccCc----ccceEEEEEccCCCEEEEEc--CCCcEEEEEcCCceEeceeccccc-------cce
Q 018858 83 KSFDVHMPASWRPLESYNYN----KEEINQIVCNPKSSFLACAD--DGGDVKIIDIRQHCLYKSLRAGHS-------SIC 149 (349)
Q Consensus 83 ~iwd~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~-------~~v 149 (349)
++||..+++....+.....+ ......++|+|++++++++. .+..+.+|+..+++.+..+. .+. ...
T Consensus 81 ~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 159 (355)
T d2bbkh_ 81 EVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLD-VPDCYHIFPTAPD 159 (355)
T ss_dssp EEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE-CCSEEEEEEEETT
T ss_pred EEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEe-cCCcceEeecCCc
Confidence 99999987655444332211 12345689999999887664 46679999999998877665 222 233
Q ss_pred eEEEEccCCCCCCCC---CCC-----CCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecC
Q 018858 150 SSVQFIPWKPWEGLP---ENN-----GNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSK 221 (349)
Q Consensus 150 ~~~~~~~~~~~~~~~---~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 221 (349)
..+.+++++..+... ... ...........+...++.+ ++..++.++.++.+++|++..+.......
T Consensus 160 ~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 233 (355)
T d2bbkh_ 160 TFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQ------KAGRLVWPTYTGKIHQIDLSSGDAKFLPA 233 (355)
T ss_dssp EEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEET------TTTEEEEEBTTSEEEEEECTTSSCEECCC
T ss_pred ceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccC------CCCeEEEecCCCeEEEEecCCCcEEEEec
Confidence 456777776543111 110 1111111222233334443 66778888999999999998765432111
Q ss_pred C-----------CCCCccceeeeeccccEEEEeeeeeec-------------CceeeeeeeeecCCCcceEEEEEeeecC
Q 018858 222 S-----------TTKPLKGSQSTSKVNIRDAEMEILDQS-------------GGKRLHLDYSVGGHTAAASCVAFSMFGE 277 (349)
Q Consensus 222 ~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~h~~~i~~i~~~~~~~ 277 (349)
. ........+++++++..+++....... .....+.+..+. +...+.+++|+ |
T Consensus 234 ~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~-~~~~~~~~a~s---p 309 (355)
T d2bbkh_ 234 VEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVS---Q 309 (355)
T ss_dssp EESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEEC---C
T ss_pred cCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec-CCCCEEEEEEc---C
Confidence 0 012234568899999988753322111 111122233333 23457899999 8
Q ss_pred Ccc--EEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEe
Q 018858 278 RGK--YLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCT 326 (349)
Q Consensus 278 ~~~--~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 326 (349)
||+ ++++++.|+.|+|||++++ +.+..+..+......+.+
T Consensus 310 DG~~~l~v~~~~d~~i~v~D~~tg---------~~~~~i~~~G~~p~~i~~ 351 (355)
T d2bbkh_ 310 DEKPLLYALSTGDKTLYIHDAESG---------EELRSVNQLGHGPQVITT 351 (355)
T ss_dssp SSSCEEEEEETTTTEEEEEETTTC---------CEEEEECCCCSSCCEEEC
T ss_pred CCCeEEEEEECCCCEEEEEECCCC---------CEEEEEeCcCCCccEEEe
Confidence 987 4567778999999999998 555555555444444444
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.83 E-value=7.1e-19 Score=144.02 Aligned_cols=276 Identities=11% Similarity=0.048 Sum_probs=177.9
Q ss_pred cCCCCeeeeC-CceeeeEEEEecCCCceE-EEeCCCCcEEEEECCCCcEEEEeecCCC------CeEEEEEecCCCEEEE
Q 018858 4 AEAKPRRLRG-HKATATCCIASRDRPGFV-ASSGEDGCICWFDLRSKDVQLVTDVGNG------PVTSLCFKSGNEDIIY 75 (349)
Q Consensus 4 ~~~~~~~l~~-h~~~i~~~~~~~~~~~~l-~t~~~dg~i~vwd~~~~~~~~~~~~~~~------~v~~~~~~~~~~~l~~ 75 (349)
+++.+++++. |...+.+++|+|| ++++ +++..++.|++||+.+++.+..+..... .+..++|+|+|+++++
T Consensus 27 t~~~~~t~~~~~~~~p~~l~~spD-G~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v 105 (346)
T d1jmxb_ 27 SDTVYKSCVMPDKFGPGTAMMAPD-NRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYA 105 (346)
T ss_dssp TTEEEEEEECSSCCSSCEEEECTT-SSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEE
T ss_pred CCCEEEEEEcCCCCCcceEEECCC-CCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEE
Confidence 5567777773 5667889999999 6665 6677889999999999998877764332 3557899999999887
Q ss_pred Ee------------CCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceecc
Q 018858 76 VS------------SGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRA 143 (349)
Q Consensus 76 ~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 143 (349)
++ .++.+.+|+..+++....+..... ...+..+.+++++..++.+ +.+.+|++.+++.+..+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~- 180 (346)
T d1jmxb_ 106 TVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAADDGSLYVAG---PDIYKMDVKTGKYTVALP- 180 (346)
T ss_dssp EEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECTTSCEEEES---SSEEEECTTTCCEEEEEC-
T ss_pred EecCCcceeeeeccCcceEEEEecccceeeeEEEeeec-cCceEEEEecCCCEEEEeC---CcceEEEccCCCEEEEEe-
Confidence 65 367889999887655444443321 2445666777777666543 458999999998888776
Q ss_pred ccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCC
Q 018858 144 GHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKST 223 (349)
Q Consensus 144 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 223 (349)
.......+.++|++..+........... .........+ ....++++..++.+.+||+.++........+
T Consensus 181 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (346)
T d1jmxb_ 181 -LRNWNRKGYSAPDVLYFWPHQSPRHEFS----MLYTIARFKD------DKQDPATADLLYGYLSVDLKTGKTHTQEFAD 249 (346)
T ss_dssp -STTCCCTTBCCCBCCCCCCCCCTTCEEE----EEEEEEEC-------------CCCEEEEEEEEEETTTCCEEEEEEEE
T ss_pred -cCCCccceEEeccccEEEEEecCCCceE----eeeeeeeecc------CceeEeeccCCceEEEEECCCCceEEEEeec
Confidence 3344566667775433211100000000 0001111111 3444556666778999999987766655555
Q ss_pred CCCccceeeeeccccEEEEeeeeee--cCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCc
Q 018858 224 TKPLKGSQSTSKVNIRDAEMEILDQ--SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ 300 (349)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 300 (349)
....+....+++++..++....... ......+.+..+. +...+.+++|+ |||++|++++.|+.|+|||.++.+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s---~DG~~l~v~~~d~~v~v~D~~t~~ 324 (346)
T d1jmxb_ 250 LTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFD---KKGDKLYLGGTFNDLAVFNPDTLE 324 (346)
T ss_dssp CSSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEE-CSSCCCEEEEC---SSSSCEEEESBSSEEEEEETTTTE
T ss_pred ccceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEc-CCCCEEEEEEc---CCCCEEEEEeCCCcEEEEECccCC
Confidence 5566777788888777764332111 1111223333333 33468899999 999999999999999999999984
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=3.5e-16 Score=127.14 Aligned_cols=245 Identities=9% Similarity=0.065 Sum_probs=154.9
Q ss_pred CCceeeeEEEEecCCCceEE-EeCCCCcEEEEECCCCcEEEE---eecCCCCeEEEEEecCCCEEEEEeC-CCeEEEEEc
Q 018858 13 GHKATATCCIASRDRPGFVA-SSGEDGCICWFDLRSKDVQLV---TDVGNGPVTSLCFKSGNEDIIYVSS-GKEVKSFDV 87 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~-t~~~dg~i~vwd~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~ 87 (349)
.|.+.+.+++|+|+ +++|+ ++..|+.|++|++........ ...+...+..++|+|+|++|++++. ++.|.+|+.
T Consensus 34 ~~~~~v~~la~spD-G~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~ 112 (333)
T d1ri6a_ 34 DVPGQVQPMVVSPD-KRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRL 112 (333)
T ss_dssp ECSSCCCCEEECTT-SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred cCCCCEeEEEEeCC-CCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeecc
Confidence 57889999999999 78774 555689999999876543222 2234456778999999999999885 678999988
Q ss_pred cCCCcccceeeccCcccceEEEEEccCCCEEEEEc-CCCcEEEEEcCCceEece-----eccccccceeEEEEccCCCCC
Q 018858 88 HMPASWRPLESYNYNKEEINQIVCNPKSSFLACAD-DGGDVKIIDIRQHCLYKS-----LRAGHSSICSSVQFIPWKPWE 161 (349)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~ 161 (349)
.......... ...+...+.++.++|++++++.++ .+..|.+|+......... ...........++|++
T Consensus 113 ~~~~~~~~~~-~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~----- 186 (333)
T d1ri6a_ 113 EDGLPVGVVD-VVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHP----- 186 (333)
T ss_dssp ETTEEEEEEE-EECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECT-----
T ss_pred ccccceeccc-ccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEec-----
Confidence 7643322222 233456688899999999887766 455699999875432211 1112334456777877
Q ss_pred CCCCCCCCCccccCCceeEEeecCcccccCCCCcEEE-EEcCCCeEEEEEccCceee-------eecCC--CCCCcccee
Q 018858 162 GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV-VAKGDGVVDVINIESELNI-------SRSKS--TTKPLKGSQ 231 (349)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~-------~~~~~--~~~~~~~~~ 231 (349)
++..++ +....+...+++....... ..... ........+
T Consensus 187 -------------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (333)
T d1ri6a_ 187 -------------------------------NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADI 235 (333)
T ss_dssp -------------------------------TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEE
T ss_pred -------------------------------cceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeE
Confidence 555554 4456677888876543211 11111 112334567
Q ss_pred eeeccccEEEEeeeeeec-------CceeeeeeeeecCCCcceEEEEEeeecCCccEEEEee-CCCeEEEEecCC
Q 018858 232 STSKVNIRDAEMEILDQS-------GGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG-NDKLVKVWDCSR 298 (349)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~-~d~~i~vwd~~~ 298 (349)
+++++++++.+....... .............+...+..++|+ |||++|++++ .++.|++|++..
T Consensus 236 ~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~s---pDGk~l~va~~~~~~v~v~~id~ 307 (333)
T d1ri6a_ 236 HITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVD---HSGKYLIAAGQKSHHISVYEIVG 307 (333)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEEC---TTSSEEEEECTTTCEEEEEEEET
T ss_pred EEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEe---CCCCEEEEEECCCCeEEEEEEEC
Confidence 899999988764322111 111111111222234567789999 9999887765 568999996643
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.77 E-value=7.7e-16 Score=127.30 Aligned_cols=264 Identities=10% Similarity=-0.007 Sum_probs=173.2
Q ss_pred ccCCCCeeeeCCceeeeEEEEecCCCceEEEeC----------CCCcEEEEECCCCcEEEEeecCCCCe-------EEEE
Q 018858 3 DAEAKPRRLRGHKATATCCIASRDRPGFVASSG----------EDGCICWFDLRSKDVQLVTDVGNGPV-------TSLC 65 (349)
Q Consensus 3 ~~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~----------~dg~i~vwd~~~~~~~~~~~~~~~~v-------~~~~ 65 (349)
.+++.+.++..+..+ .++|+|+ |++|++++ .++.|.+||..+++.+..+..+.... ..+.
T Consensus 55 ~tg~~~~~~~~~~~~--~~a~SpD-G~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (373)
T d2madh_ 55 GSGSILGHVNGGFLP--NPVAAHS-GSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNA 131 (373)
T ss_pred CCCCEEEEEeCCCCc--cEEEcCC-CCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEE
Confidence 366777777776554 6899998 88888764 45789999999999988877665433 4578
Q ss_pred EecCCCEEEEEe--CCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCE-EEEEcCCCcEEEEEcCCceEeceec
Q 018858 66 FKSGNEDIIYVS--SGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSF-LACADDGGDVKIIDIRQHCLYKSLR 142 (349)
Q Consensus 66 ~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~ 142 (349)
|+++++.++... .++.+.+|+....+ .... .....++.++|+++. +++.+.|+.+.+|+...++......
T Consensus 132 ~s~dg~~~~v~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~ 204 (373)
T d2madh_ 132 NTPNNADLLFFQFAAGPAVGLVVQGGSS---DDQL----LSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLV 204 (373)
T ss_pred EEeCCCcEEEEEEcCCCceEEeeccCCe---EEEE----eccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEe
Confidence 888888776654 35678888877542 2222 234667889999864 4678899999999998877665543
Q ss_pred cccc------cceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCcee
Q 018858 143 AGHS------SICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELN 216 (349)
Q Consensus 143 ~~~~------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 216 (349)
.+. .......+.+ ++ .++..+.++.+.+|+......
T Consensus 205 -~~~~~~~~~~~~~~~~~~~------------------------------------~~-~~~~~~~~~~v~~~~~~~~~~ 246 (373)
T d2madh_ 205 -GAMLTAAQNLLTQPAQANK------------------------------------SG-RIVWPVYSGKILQADISAAGA 246 (373)
T ss_pred -eeccccCccceeeeEEECC------------------------------------Cc-eEEEecCCceEEEEEcCCCeE
Confidence 111 1122233333 33 445556788899998887643
Q ss_pred eeecCC-----------CCCCccceeeeeccccEEEEeeeeee-------------cCceeeeeeeeecCCCcceEEEEE
Q 018858 217 ISRSKS-----------TTKPLKGSQSTSKVNIRDAEMEILDQ-------------SGGKRLHLDYSVGGHTAAASCVAF 272 (349)
Q Consensus 217 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~h~~~i~~i~~ 272 (349)
...... ........+++++++..++....... ......+.+..+. +...+..++|
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~ 325 (373)
T d2madh_ 247 TNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISV 325 (373)
T ss_pred EEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEE
Confidence 221111 11223345678888877664221110 0111222233332 4567889999
Q ss_pred eeecCCcc--EEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEee
Q 018858 273 SMFGERGK--YLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTT 327 (349)
Q Consensus 273 ~~~~~~~~--~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 327 (349)
+ |||+ ++++++.|+.|+|||+.++ +.+..+..+....+.+++.
T Consensus 326 s---pDG~~~l~vt~~~d~~v~v~D~~tg---------~~~~~~~~~g~~P~~l~~~ 370 (373)
T d2madh_ 326 A---QDGGPDLYALSAGTEVLHIYDAGAG---------DQDQSTVELGSGPQVLSVM 370 (373)
T ss_pred C---CCCCEEEEEEeCCCCeEEEEECCCC---------CEEEEECCCCCCCcEEEEe
Confidence 9 8998 4568889999999999998 6677777777777777764
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.70 E-value=1.8e-15 Score=124.07 Aligned_cols=193 Identities=10% Similarity=-0.044 Sum_probs=116.1
Q ss_pred eEEEEEecCCCEEEEEe-----CCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEE----------cCCC
Q 018858 61 VTSLCFKSGNEDIIYVS-----SGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACA----------DDGG 125 (349)
Q Consensus 61 v~~~~~~~~~~~l~~~~-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----------~~dg 125 (349)
+.-.+.+|+++.+++.. .+..|.+||..+++....+ .. +....++|+||+++|++. ..++
T Consensus 4 ~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~---~~--g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~ 78 (355)
T d2bbkh_ 4 RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMI---DG--GFLPNPVVADDGSFIAHASTVFSRIARGERTD 78 (355)
T ss_dssp CBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEE---EE--CSSCEEEECTTSSCEEEEEEEEEETTEEEEEE
T ss_pred cEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEE---EC--CCCCceEEcCCCCEEEEEeCCCccccccCCCC
Confidence 33345689999987764 3567999999987544333 22 334479999999988764 3478
Q ss_pred cEEEEEcCCceEeceeccccc-------cceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEE
Q 018858 126 DVKIIDIRQHCLYKSLRAGHS-------SICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV 198 (349)
Q Consensus 126 ~i~i~d~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 198 (349)
.|++||+.+++.+..+. .+. .....++|+| +++.++
T Consensus 79 ~v~v~D~~t~~~~~~~~-~~~~~~~~~~~~~~~~~~s~------------------------------------dg~~~~ 121 (355)
T d2bbkh_ 79 YVEVFDPVTLLPTADIE-LPDAPRFLVGTYPWMTSLTP------------------------------------DGKTLL 121 (355)
T ss_dssp EEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGEEECT------------------------------------TSSEEE
T ss_pred EEEEEECCCCCEEEEEe-cCCcceeecCCCCceEEEec------------------------------------CCCeeE
Confidence 89999999998877665 222 2234566777 677776
Q ss_pred EEc--CCCeEEEEEccCceeeeecCCCC------CCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEE
Q 018858 199 VAK--GDGVVDVINIESELNISRSKSTT------KPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCV 270 (349)
Q Consensus 199 ~~~--~dg~i~i~d~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i 270 (349)
++. .+..+.+|+..+++.......+. ......+.++++++.+............ .........+...+...
T Consensus 122 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 200 (355)
T d2bbkh_ 122 FYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI-THTEVFHPEDEFLINHP 200 (355)
T ss_dssp EEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEE-EECCCCSCTTSCBCSCC
T ss_pred EecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEE-Eecccccceecceeeec
Confidence 654 56788999998877665443322 1233456788888877642221111110 00000011122233444
Q ss_pred EEeeecCCccEEEEeeCCCeEEEEecCCC
Q 018858 271 AFSMFGERGKYLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 271 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 299 (349)
.+. +++..++.++.++.+++|++..+
T Consensus 201 ~~~---~~~~~~~~~~~~~~~~v~~~~~~ 226 (355)
T d2bbkh_ 201 AYS---QKAGRLVWPTYTGKIHQIDLSSG 226 (355)
T ss_dssp EEE---TTTTEEEEEBTTSEEEEEECTTS
T ss_pred ccc---CCCCeEEEecCCCeEEEEecCCC
Confidence 455 45555666666666666666544
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.65 E-value=2.2e-14 Score=118.22 Aligned_cols=278 Identities=8% Similarity=-0.072 Sum_probs=165.8
Q ss_pred CceeeeEEEEecCCCce---EEEeCCCCc--EEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEe----------C
Q 018858 14 HKATATCCIASRDRPGF---VASSGEDGC--ICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVS----------S 78 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~---l~t~~~dg~--i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~ 78 (349)
+.++...++..++ ++. .++...+|. +.+||..+++.+..+..+..+ .++|+|+|+.|++.+ .
T Consensus 18 ~~g~~~~~a~~~~-~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~ 94 (368)
T d1mdah_ 18 SDGSSCDHGPGAI-SRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKR 94 (368)
T ss_dssp CCCCCBCCCCCCC-TTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSE
T ss_pred cCCCccccccCCC-CcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCcccccccc
Confidence 3444445556666 443 223444444 667799999998888877655 588999999998765 3
Q ss_pred CCeEEEEEccCCCcccceeeccC----cccceEEEEEccCCCEEEEEc-CCCcEEEEEcCCceEeceeccccccceeEEE
Q 018858 79 GKEVKSFDVHMPASWRPLESYNY----NKEEINQIVCNPKSSFLACAD-DGGDVKIIDIRQHCLYKSLRAGHSSICSSVQ 153 (349)
Q Consensus 79 dg~i~iwd~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~ 153 (349)
|+.|.+||..+++....+..-.. .......++|+|||++++++. .++.+.+||+.+++....+. .+....
T Consensus 95 d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~-~~~~~~---- 169 (368)
T d1mdah_ 95 TDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTK-SASCFH---- 169 (368)
T ss_dssp EEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEE-CSSCCC----
T ss_pred CCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEee-ccCcce----
Confidence 67899999998765444332110 112234689999999988775 57899999999999888776 332211
Q ss_pred EccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeec-----CCCCCCcc
Q 018858 154 FIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS-----KSTTKPLK 228 (349)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~~~ 228 (349)
..|. ....++..+.||.+.++++......... ........
T Consensus 170 ~~~~-----------------------------------~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (368)
T d1mdah_ 170 IHPG-----------------------------------AAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSS 214 (368)
T ss_dssp CEEE-----------------------------------ETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCS
T ss_pred EccC-----------------------------------CCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccce
Confidence 1121 2445666777888888887654322211 11112233
Q ss_pred ceeeeeccccEEEEeeee----eecCceeeeeeeeecCC----------CcceEEEEEeeecCCccEEEEeeCC------
Q 018858 229 GSQSTSKVNIRDAEMEIL----DQSGGKRLHLDYSVGGH----------TAAASCVAFSMFGERGKYLISGGND------ 288 (349)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~h----------~~~i~~i~~~~~~~~~~~l~s~~~d------ 288 (349)
....+.+++..+...+.. +.... ..........+ ......++++ +++..++....+
T Consensus 215 ~~~~~~~~g~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~---~~~~~~~v~~~~~~~~~~ 290 (368)
T d1mdah_ 215 QAAQANYPGMLVWAVASSILQGDIPAA-GATMKAAIDGNESGRKADNFRSAGFQMVAKL---KNTDGIMILTVEHSRSCL 290 (368)
T ss_dssp CCEEETTTTEEEECBSSCCEEEECCSS-CCEEECCCCSSCTHHHHTTEEECSSSCEEEE---TTTTEEEEEEEECSSCTT
T ss_pred eecccccCcEEEEecCCCEEEEeecCC-ceEEEeecccccceeeeeeecCCCceeEEEc---CCCCEEEEEecCCCceee
Confidence 455666666655532110 00000 00111111111 1122346677 777766554321
Q ss_pred ---CeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCc--EEEeeCCCeEEEeeCC
Q 018858 289 ---KLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESEN--LVVCDTSKVVKVYSIS 349 (349)
Q Consensus 289 ---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--l~~~~~dg~i~iw~~~ 349 (349)
..|++||..+++ .+... .+...+.+++|+| ||+. +++...|+.|++||..
T Consensus 291 ~~~~~v~v~D~~t~~---------~~~~~-~~~~~~~~~a~sp-DG~~~ly~s~~~~~~v~v~D~~ 345 (368)
T d1mdah_ 291 AAAENTSSVTASVGQ---------TSGPI-SNGHDSDAIIAAQ-DGASDNYANSAGTEVLDIYDAA 345 (368)
T ss_dssp SCEEEEEEEESSSCC---------EEECC-EEEEEECEEEECC-SSSCEEEEEETTTTEEEEEESS
T ss_pred cCCceEEEEECCCCc---------EeEEe-cCCCceeEEEECC-CCCEEEEEEeCCCCeEEEEECC
Confidence 359999999973 33322 3456788999988 7763 3455688999999963
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.53 E-value=1.1e-12 Score=111.72 Aligned_cols=112 Identities=13% Similarity=0.065 Sum_probs=83.7
Q ss_pred eeeCCceeeeEEEEecCCCceEEEeC---------CCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCC
Q 018858 10 RLRGHKATATCCIASRDRPGFVASSG---------EDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGK 80 (349)
Q Consensus 10 ~l~~h~~~i~~~~~~~~~~~~l~t~~---------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 80 (349)
.|..|...|.++.|+|| +++|+.++ .++.+.+||+.+++ +..+..+...+..+.|||+|+.||... ++
T Consensus 56 ~~~~~~~~i~~~~~SpD-g~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~ 132 (470)
T d2bgra1 56 TFDEFGHSINDYSISPD-GQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYVW-NN 132 (470)
T ss_dssp TTTTSSSCCCEEEECTT-SSEEEEEEEEEECSSSCEEEEEEEEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEEE-TT
T ss_pred hhhhccCccceeEECCC-CCEEEEEECCcceeeeccCceEEEEECCCCc-ccccccCCccccccccccCcceeeEee-cc
Confidence 44556688999999999 88888764 35788999999877 456777889999999999999999965 67
Q ss_pred eEEEEEccCCCcccceeecc---------------CcccceEEEEEccCCCEEEEEcCC
Q 018858 81 EVKSFDVHMPASWRPLESYN---------------YNKEEINQIVCNPKSSFLACADDG 124 (349)
Q Consensus 81 ~i~iwd~~~~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~l~~~~~d 124 (349)
.+.+|+..+++..+...... ...+....+.|+|||++|+....|
T Consensus 133 ~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d 191 (470)
T d2bgra1 133 DIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFN 191 (470)
T ss_dssp EEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEE
T ss_pred cceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEec
Confidence 89999988765433222110 011234567899999999987644
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.53 E-value=1.6e-12 Score=110.64 Aligned_cols=134 Identities=11% Similarity=0.072 Sum_probs=99.1
Q ss_pred EEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeec-----CCCCeEEEEEecCCCEEEEEeC---------CCeEEEE
Q 018858 20 CCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDV-----GNGPVTSLCFKSGNEDIIYVSS---------GKEVKSF 85 (349)
Q Consensus 20 ~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~---------dg~i~iw 85 (349)
.+.|.++ ++++... ++.+.+||+.+++....+.. |...|.++.||||+++|+.++. ++.+.+|
T Consensus 21 ~~~W~~d-~~~~~~~--~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~ 97 (470)
T d2bgra1 21 SLRWISD-HEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY 97 (470)
T ss_dssp CCEECSS-SEEEEES--SSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred CCEeCCC-CEEEEEc--CCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence 4678887 7777653 67899999999987665544 4577999999999999998753 4678999
Q ss_pred EccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccc-----------------cccc
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAG-----------------HSSI 148 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----------------~~~~ 148 (349)
|+++++ +..+..+...+..+.|+|||+.+|... ++.+++|+..+++..+....+ ..+.
T Consensus 98 d~~~~~----~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~ 172 (470)
T d2bgra1 98 DLNKRQ----LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA 172 (470)
T ss_dssp ETTTTE----ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred ECCCCc----ccccccCCccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCC
Confidence 999753 233444567899999999999999864 578999999887655433211 1123
Q ss_pred eeEEEEccCCCCC
Q 018858 149 CSSVQFIPWKPWE 161 (349)
Q Consensus 149 v~~~~~~~~~~~~ 161 (349)
...+.|+|+|.++
T Consensus 173 ~~~~~wSPDGk~i 185 (470)
T d2bgra1 173 YSALWWSPNGTFL 185 (470)
T ss_dssp SBCEEECTTSSEE
T ss_pred ccccEECCCCCcc
Confidence 4557788876655
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.53 E-value=1.3e-12 Score=107.46 Aligned_cols=246 Identities=6% Similarity=-0.048 Sum_probs=146.8
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEe----------CCCCcEEEEECCCCcEEEEeecCCC-------CeEEEEE
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASS----------GEDGCICWFDLRSKDVQLVTDVGNG-------PVTSLCF 66 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~----------~~dg~i~vwd~~~~~~~~~~~~~~~-------~v~~~~~ 66 (349)
+++.+.++.++..+ .++|+|+ ++.|++. +.|+.|.+||..+++.+..+..+.. ....++|
T Consensus 55 ~~~~~~~~~~~~~~--~~a~spD-g~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~ 131 (368)
T d1mdah_ 55 CGVTLGHSLGAFLS--LAVAGHS-GSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGN 131 (368)
T ss_dssp TTEEEEEEEECTTC--EEEECTT-SSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEE
T ss_pred CCcEEEEEeCCCCC--cceECCC-CCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEE
Confidence 34555566655544 4789999 7877764 3477899999999999888765432 2346899
Q ss_pred ecCCCEEEEEe-CCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceec---
Q 018858 67 KSGNEDIIYVS-SGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR--- 142 (349)
Q Consensus 67 ~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--- 142 (349)
+|+|++++++. .++.+.+||+.+++....+.. +.... ........++..+.||.+.++++..........
T Consensus 132 SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~---~~~~~---~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~ 205 (368)
T d1mdah_ 132 CASSACLLFFLFGSSAAAGLSVPGASDDQLTKS---ASCFH---IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQ 205 (368)
T ss_dssp CTTSSCEEEEECSSSCEEEEEETTTEEEEEEEC---SSCCC---CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCC
T ss_pred CCCCCEEEEEeCCCCeEEEEECCCCcEeEEeec---cCcce---EccCCCceEEEEcCCCCEEEEEecCCceeeeeeecc
Confidence 99999998876 468999999998654333322 11111 111223566667778888888876443322111
Q ss_pred --cccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeec
Q 018858 143 --AGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRS 220 (349)
Q Consensus 143 --~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 220 (349)
..+...+....+.+ ++..+.. ..+.+.+++..........
T Consensus 206 ~~~~~~~~~~~~~~~~------------------------------------~g~~~~~--~~~~v~~~~~~~~~~~~~~ 247 (368)
T d1mdah_ 206 CTGAQNCSSQAAQANY------------------------------------PGMLVWA--VASSILQGDIPAAGATMKA 247 (368)
T ss_dssp SCTTSCBCSCCEEETT------------------------------------TTEEEEC--BSSCCEEEECCSSCCEEEC
T ss_pred cccccccceeeccccc------------------------------------CcEEEEe--cCCCEEEEeecCCceEEEe
Confidence 02233344455555 4444433 3455666666554332211
Q ss_pred CC-----------CCCCccceeeeeccccEEEEeeeeeec------------CceeeeeeeeecCCCcceEEEEEeeecC
Q 018858 221 KS-----------TTKPLKGSQSTSKVNIRDAEMEILDQS------------GGKRLHLDYSVGGHTAAASCVAFSMFGE 277 (349)
Q Consensus 221 ~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~h~~~i~~i~~~~~~~ 277 (349)
.. ........+++++++..+.+....... .....+.+..+. +...+..++|+ |
T Consensus 248 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~a~s---p 323 (368)
T d1mdah_ 248 AIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAA---Q 323 (368)
T ss_dssp CCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE-EEEEECEEEEC---C
T ss_pred ecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEec-CCCceeEEEEC---C
Confidence 11 111233567899998887653222111 111122233333 33568889999 8
Q ss_pred Ccc--EEEEeeCCCeEEEEecCCCc
Q 018858 278 RGK--YLISGGNDKLVKVWDCSRFQ 300 (349)
Q Consensus 278 ~~~--~l~s~~~d~~i~vwd~~~~~ 300 (349)
||+ .++++..|+.|++||..+++
T Consensus 324 DG~~~ly~s~~~~~~v~v~D~~tgk 348 (368)
T d1mdah_ 324 DGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp SSSCEEEEEETTTTEEEEEESSSCE
T ss_pred CCCEEEEEEeCCCCeEEEEECCCCC
Confidence 986 34677789999999999984
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.50 E-value=2.2e-12 Score=106.04 Aligned_cols=271 Identities=10% Similarity=0.002 Sum_probs=154.2
Q ss_pred EEEeCCCCcEEEEECCCCcEEEEeec------------------------------CCCCeEEEEEecCCCEEEEEe-CC
Q 018858 31 VASSGEDGCICWFDLRSKDVQLVTDV------------------------------GNGPVTSLCFKSGNEDIIYVS-SG 79 (349)
Q Consensus 31 l~t~~~dg~i~vwd~~~~~~~~~~~~------------------------------~~~~v~~~~~~~~~~~l~~~~-~d 79 (349)
+++++.+|.|.+|++.+++.++++.. |.........+|||++|++.. .+
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~ 93 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN 93 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence 67888999999999999998877643 112233444578999987665 57
Q ss_pred CeEEEEEccCCCcccceeeccCcccceEEEEEccCCC--EEEEEcCCC-----------------cEEEEEcCCceEece
Q 018858 80 KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSS--FLACADDGG-----------------DVKIIDIRQHCLYKS 140 (349)
Q Consensus 80 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg-----------------~i~i~d~~~~~~~~~ 140 (349)
.+|.++|+++.+..+.+.. + +...+..++|+|+++ +++..+++. .+..+|..+.+...+
T Consensus 94 ~rVavIDl~t~k~~~ii~i-P-~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~q 171 (441)
T d1qnia2 94 TRVARIRLDIMKTDKITHI-P-NVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQ 171 (441)
T ss_dssp TEEEEEETTTTEEEEEEEC-T-TCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEE
T ss_pred CEEEEEECCCCcEeeEEec-C-CCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEE
Confidence 8999999998765444332 1 246788999999997 444444332 234577777777666
Q ss_pred eccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCC-eEEEEEccCceeeee
Q 018858 141 LRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDG-VVDVINIESELNISR 219 (349)
Q Consensus 141 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~ 219 (349)
+. -......+.|+| +|+++++++.+. .+..++..+......
T Consensus 172 I~--v~~~p~~v~~sp------------------------------------dGk~a~vt~~nse~~~~id~~t~~~~d~ 213 (441)
T d1qnia2 172 VI--VDGNLDNTDADY------------------------------------TGKYATSTCYNSERAVDLAGTMRNDRDW 213 (441)
T ss_dssp EE--ESSCCCCEEECS------------------------------------SSSEEEEEESCTTCCSSHHHHTCSSBCE
T ss_pred Ee--cCCCccceEECC------------------------------------CCCEEEEEecCCCceEEEeccCcceEEE
Confidence 65 334577888888 566555554332 222222221111000
Q ss_pred cCCCCCCccceeeeeccccEEEEeeeeee--cCceeeeeeeeecCCCcceEEEEEeeecCCccEEE-EeeCCCeEEEEec
Q 018858 220 SKSTTKPLKGSQSTSKVNIRDAEMEILDQ--SGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLI-SGGNDKLVKVWDC 296 (349)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~-s~~~d~~i~vwd~ 296 (349)
.. .......+.++++|+++...+..-. ........+..+..... ...+.++ |||++++ ++..+++|.|||+
T Consensus 214 i~--v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vS---PDGkyl~~~~~~~~tvsv~d~ 287 (441)
T d1qnia2 214 VV--VFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKN-PHGLNTS---PDGKYFIANGKLSPTVSVIAI 287 (441)
T ss_dssp EE--EEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSS-CCCEEEC---TTSCEEEEECTTSSBEEEEEG
T ss_pred EE--eCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCC-ccCceEC---CCCCEEEEeCCcCCcEEEEEe
Confidence 00 0011123344555554432111000 00011123334444433 4678999 8999875 5568999999999
Q ss_pred CCCcceeccc--ccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 297 SRFQGVQTSI--NNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 297 ~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
.+..+..... ....+.......-.....+|.+ +|..+.+...|..|..|++
T Consensus 288 ~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~-~g~~yts~~~ds~v~kw~~ 340 (441)
T d1qnia2 288 DKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDG-RGNAYTTLFIDSQVCKWNI 340 (441)
T ss_dssp GGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECS-SSEEEEEETTTTEEEEEEH
T ss_pred ehhhhHhhccCCcceEEEeecccccCcccceecC-CceEEEcccccceEEEecc
Confidence 7643211100 0011111111111233346766 7777777789999999985
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.49 E-value=9.4e-13 Score=108.22 Aligned_cols=280 Identities=10% Similarity=0.023 Sum_probs=162.0
Q ss_pred CCceeeeEEEEecCCCceEE-EeCCCCcEEEEECCCCcEEEEeec-CCCCeEEEEEecCCCE--EEEEeCCC--------
Q 018858 13 GHKATATCCIASRDRPGFVA-SSGEDGCICWFDLRSKDVQLVTDV-GNGPVTSLCFKSGNED--IIYVSSGK-------- 80 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~-t~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~--l~~~~~dg-------- 80 (349)
.|........++|| |++|+ +...++.|.++|+++++....+.. +...+..++|+|+++. ++..+.+.
T Consensus 69 ~hhP~~s~t~gtpD-Gr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~ 147 (441)
T d1qnia2 69 CHHPHISMTDGRYD-GKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGT 147 (441)
T ss_dssp BCCCEEEEETTEEE-EEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSS
T ss_pred ccCCCcceecccCC-CCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccc
Confidence 45556666777898 77775 455778999999999998776653 5678999999999984 44444332
Q ss_pred ---------eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCC-cEEEEEcCCceEeceecccccccee
Q 018858 81 ---------EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGG-DVKIIDIRQHCLYKSLRAGHSSICS 150 (349)
Q Consensus 81 ---------~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~v~ 150 (349)
.+..+|..+.+....+.. ......++++|+|+++++.+.+. .+..++..+.+....+. ......
T Consensus 148 ~~~~~~~~~~~~~iD~~t~~v~~qI~v----~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~--v~n~p~ 221 (441)
T d1qnia2 148 DFSLDNSYTMFTAIDAETMDVAWQVIV----DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVV--VFNVER 221 (441)
T ss_dssp CCCGGGEEEEEEEEETTTCSEEEEEEE----SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEE--EEEHHH
T ss_pred ccccccccceEEeecCccceeeEEEec----CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEE--eCCccc
Confidence 234566665433222222 24577899999999988777543 33333333333222222 111122
Q ss_pred EEEEccCCCCCCCCCCC----------CCCccccCCceeEEeecCcccccCCCCcEEEE-EcCCCeEEEEEccCceeeee
Q 018858 151 SVQFIPWKPWEGLPENN----------GNAGQCYNPAFVHAIAIPDADMLDKTNKICVV-AKGDGVVDVINIESELNISR 219 (349)
Q Consensus 151 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~ 219 (349)
.+.+.|+|.+....+.. ............+.++++| +|+++++ +..+++|.+||+++.....
T Consensus 222 ~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSP------DGkyl~~~~~~~~tvsv~d~~k~~~~~- 294 (441)
T d1qnia2 222 IAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSP------DGKYFIANGKLSPTVSVIAIDKLDDLF- 294 (441)
T ss_dssp HHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECT------TSCEEEEECTTSSBEEEEEGGGHHHHT-
T ss_pred eEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECC------CCCEEEEeCCcCCcEEEEEeehhhhHh-
Confidence 33455555554322111 0111111234467788888 8998754 6689999999998632110
Q ss_pred cCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCC
Q 018858 220 SKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 299 (349)
.... ....++.. ... ..-.....+|+ ++|+.+.+...|..|..|++...
T Consensus 295 -~~~~-~~~~~~~~-------------------------~~~-~glgplh~~fd---~~g~~yts~~~ds~v~kw~~~~~ 343 (441)
T d1qnia2 295 -EDKI-ELRDTIVA-------------------------EPE-LGLGPLHTTFD---GRGNAYTTLFIDSQVCKWNIADA 343 (441)
T ss_dssp -TTSS-CGGGGEEE-------------------------CCB-CCSCEEEEEEC---SSSEEEEEETTTTEEEEEEHHHH
T ss_pred -hccC-CcceEEEe-------------------------ecc-cccCcccceec---CCceEEEcccccceEEEeccchh
Confidence 0000 00000000 000 01123445688 89988889999999999998532
Q ss_pred cceeccc-ccceeee-----ccccccceEEEEeecCCCCcEEEee
Q 018858 300 QGVQTSI-NNDLLIK-----NINLNKKVNWLCTTPTESENLVVCD 338 (349)
Q Consensus 300 ~~~~~~~-~~~~~~~-----~~~~~~~v~~~~~~~~~~~~l~~~~ 338 (349)
....... ...++.. ..+|...+.+.+++| ||++|++++
T Consensus 344 ~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~p-dGk~l~s~~ 387 (441)
T d1qnia2 344 IKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDA-DGKWLVVLS 387 (441)
T ss_dssp HHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTC-CCCEEEEEE
T ss_pred hhhhccCCCceeEeccccccCCCCCccccccccCC-CCcEEEecC
Confidence 1110000 0022222 257888888888877 999999994
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.46 E-value=5.6e-11 Score=92.40 Aligned_cols=236 Identities=8% Similarity=-0.027 Sum_probs=144.0
Q ss_pred eeeEEEEecCCCceEEE-eCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccc
Q 018858 17 TATCCIASRDRPGFVAS-SGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRP 95 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t-~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 95 (349)
.-..+++.++ +++.++ .+..+.+..++............-......++++++++.+++....+.+++++-.+...
T Consensus 15 ~P~~vavd~d-G~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~--- 90 (260)
T d1rwia_ 15 SPSGVAVDSA-GNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQT--- 90 (260)
T ss_dssp CEEEEEECTT-CCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCE---
T ss_pred CCCEEEEcCC-CCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeecccee---
Confidence 3478999998 675554 45567777776654433222222223457789999998777766666666654443221
Q ss_pred eeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccC
Q 018858 96 LESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYN 175 (349)
Q Consensus 96 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (349)
+.... .......+++.++++++++-..+..+..++........... .......++++.|
T Consensus 91 ~~~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~i~~~~------------------- 149 (260)
T d1rwia_ 91 VLPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPF-TGLNDPDGVAVDN------------------- 149 (260)
T ss_dssp ECCCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCC-CSCCSCCEEEECT-------------------
T ss_pred eeeee-eeeecccccccccceeEeeccccccccccccccceeeeeee-cccCCcceeeecC-------------------
Confidence 11111 12457889999999888776666677777765433211111 1223456777777
Q ss_pred CceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeee
Q 018858 176 PAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLH 255 (349)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (349)
+++++++...++.|..++.....
T Consensus 150 -----------------~g~~~v~~~~~~~i~~~d~~~~~---------------------------------------- 172 (260)
T d1rwia_ 150 -----------------SGNVYVTDTDNNRVVKLEAESNN---------------------------------------- 172 (260)
T ss_dssp -----------------TCCEEEEEGGGTEEEEECTTTCC----------------------------------------
T ss_pred -----------------CCCEeeeccccccccccccccce----------------------------------------
Confidence 78888888888899999887531
Q ss_pred eeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEE
Q 018858 256 LDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLV 335 (349)
Q Consensus 256 ~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 335 (349)
..............++++ ++|+++++....+.|..++..... ........-.....|++.+ ++.+++
T Consensus 173 ~~~~~~~~~~~p~gi~~d---~~g~l~vsd~~~~~i~~~~~~~~~---------~~~~~~~~~~~P~~i~~d~-~g~l~v 239 (260)
T d1rwia_ 173 QVVLPFTDITAPWGIAVD---EAGTVYVTEHNTNQVVKLLAGSTT---------STVLPFTGLNTPLAVAVDS-DRTVYV 239 (260)
T ss_dssp EEECCCSSCCSEEEEEEC---TTCCEEEEETTTTEEEEECTTCSC---------CEECCCCSCCCEEEEEECT-TCCEEE
T ss_pred eeeeeccccCCCccceee---eeeeeeeeecCCCEEEEEeCCCCe---------EEEEccCCCCCeEEEEEeC-CCCEEE
Confidence 011111233456889999 899988888888889888876542 1111112234567899987 676666
Q ss_pred EeeCCCeEEEee
Q 018858 336 VCDTSKVVKVYS 347 (349)
Q Consensus 336 ~~~~dg~i~iw~ 347 (349)
+-..++.|+..+
T Consensus 240 ad~~~~rI~~i~ 251 (260)
T d1rwia_ 240 ADRGNDRVVKLT 251 (260)
T ss_dssp EEGGGTEEEEEC
T ss_pred EECCCCEEEEEe
Confidence 555667676544
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.43 E-value=3.3e-10 Score=90.08 Aligned_cols=234 Identities=12% Similarity=0.037 Sum_probs=151.6
Q ss_pred eeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCc-ccc
Q 018858 17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPAS-WRP 95 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~ 95 (349)
.+..++++|+ |+++++...+++|..|+.. ++ ...+......+.+++|+++|+++++...++.+..++...... ...
T Consensus 29 ~~e~iAv~pd-G~l~vt~~~~~~I~~i~p~-g~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~ 105 (302)
T d2p4oa1 29 FLENLASAPD-GTIFVTNHEVGEIVSITPD-GN-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 105 (302)
T ss_dssp CEEEEEECTT-SCEEEEETTTTEEEEECTT-CC-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CcCCEEECCC-CCEEEEeCCCCEEEEEeCC-CC-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceee
Confidence 4778999998 8999999999999888855 33 334444667899999999999888888888888888764321 122
Q ss_pred eeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccc---------cccceeEEEEccCCCCCCCCCC
Q 018858 96 LESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAG---------HSSICSSVQFIPWKPWEGLPEN 166 (349)
Q Consensus 96 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~~~~~~ 166 (349)
+.... .......+++.++++++++.+.++.+..+|...+......... .......+.+.
T Consensus 106 ~~~~~-~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~----------- 173 (302)
T d2p4oa1 106 LLTLP-DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF----------- 173 (302)
T ss_dssp EEECT-TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE-----------
T ss_pred ccccC-CccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc-----------
Confidence 22221 2355788999999999998888899999998766433222100 00112222222
Q ss_pred CCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeee
Q 018858 167 NGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEIL 246 (349)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (349)
.+.++++.+..+.|..++.......
T Consensus 174 --------------------------~~~l~~~~~~~~~i~~~~~~~~~~~----------------------------- 198 (302)
T d2p4oa1 174 --------------------------GNFLYVSNTEKMLLLRIPVDSTDKP----------------------------- 198 (302)
T ss_dssp --------------------------TTEEEEEETTTTEEEEEEBCTTSCB-----------------------------
T ss_pred --------------------------CCceeeecCCCCeEEeccccccccc-----------------------------
Confidence 2445666678888888887653100
Q ss_pred eecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEe
Q 018858 247 DQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCT 326 (349)
Q Consensus 247 ~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 326 (349)
...... ........++++ ++|+++++...++.|..++..... ..+......-...++++|
T Consensus 199 --------~~~~~~-~~~~~pdgia~d---~dG~l~va~~~~~~V~~i~p~G~~--------~~~~~~~~~~~~pt~vaf 258 (302)
T d2p4oa1 199 --------GEPEIF-VEQTNIDDFAFD---VEGNLYGATHIYNSVVRIAPDRST--------TIIAQAEQGVIGSTAVAF 258 (302)
T ss_dssp --------CCCEEE-EESCCCSSEEEB---TTCCEEEECBTTCCEEEECTTCCE--------EEEECGGGTCTTEEEEEE
T ss_pred --------cccccc-cCCCCCcceEEC---CCCCEEEEEcCCCcEEEECCCCCE--------EEEEecCCCCCCceEEEE
Confidence 000011 112335679999 899988888888999999876531 122222333456789999
Q ss_pred e--cCCCCcEEEeeCC
Q 018858 327 T--PTESENLVVCDTS 340 (349)
Q Consensus 327 ~--~~~~~~l~~~~~d 340 (349)
. ..|++.|+.++..
T Consensus 259 g~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 259 GQTEGDCTAIYVVTNG 274 (302)
T ss_dssp CCSTTTTTEEEEEECT
T ss_pred cCCCCCCCEEEEECCC
Confidence 5 2377777766543
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.32 E-value=1.2e-08 Score=81.21 Aligned_cols=245 Identities=11% Similarity=0.076 Sum_probs=145.7
Q ss_pred eeeeEEEEecCCCceEEEeCC-------CCcEEEEECCCCcEEEEeecC----CCCeEEEEEecCCCEEEEEeCCCeEEE
Q 018858 16 ATATCCIASRDRPGFVASSGE-------DGCICWFDLRSKDVQLVTDVG----NGPVTSLCFKSGNEDIIYVSSGKEVKS 84 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~-------dg~i~vwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~dg~i~i 84 (349)
.....++|.++ ++++++... +|+|..||..+++........ ......++|.++++.++++...+.|..
T Consensus 18 ~g~EGpa~d~d-G~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~ 96 (314)
T d1pjxa_ 18 PGAEGPVFDKN-GDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLV 96 (314)
T ss_dssp TTCEEEEECTT-SCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred CCCeEeEEeCC-CCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEE
Confidence 34566789998 777665432 467999998887654332211 123578999999998888877777888
Q ss_pred EEccCCCccccee-eccCc-ccceEEEEEccCCCEEEEEcC---------------CCcEEEEEcCCceEeceecccccc
Q 018858 85 FDVHMPASWRPLE-SYNYN-KEEINQIVCNPKSSFLACADD---------------GGDVKIIDIRQHCLYKSLRAGHSS 147 (349)
Q Consensus 85 wd~~~~~~~~~~~-~~~~~-~~~v~~~~~~~~~~~l~~~~~---------------dg~i~i~d~~~~~~~~~~~~~~~~ 147 (349)
.+..... ...+. ...+. -.....+++.++|++.++-.. .|.|+.++. .++...... .-.
T Consensus 97 ~~~~g~~-~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~~~--~~~ 172 (314)
T d1pjxa_ 97 VQTDGTF-EEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQVDT--AFQ 172 (314)
T ss_dssp EETTSCE-EECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEEEE--EES
T ss_pred EeCCCcE-EEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee-cCceeEeeC--Ccc
Confidence 8876432 11111 11111 123577899999987776432 123333332 222222211 122
Q ss_pred ceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCc-----EEEEEcCCCeEEEEEccCceeeeecCC
Q 018858 148 ICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNK-----ICVVAKGDGVVDVINIESELNISRSKS 222 (349)
Q Consensus 148 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~dg~i~i~d~~~~~~~~~~~~ 222 (349)
....++|+| +++ ++++-+..+.|..||+.....+
T Consensus 173 ~pNGi~~~~------------------------------------d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~----- 211 (314)
T d1pjxa_ 173 FPNGIAVRH------------------------------------MNDGRPYQLIVAETPTKKLWSYDIKGPAKI----- 211 (314)
T ss_dssp SEEEEEEEE------------------------------------CTTSCEEEEEEEETTTTEEEEEEEEETTEE-----
T ss_pred eeeeeEECC------------------------------------CCCcceeEEEEEeecccceEEeeccCcccc-----
Confidence 234566666 332 4455567788888887642100
Q ss_pred CCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecC-CCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcc
Q 018858 223 TTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGG-HTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQG 301 (349)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~ 301 (349)
...+....+.+ +......+++. .+|++.++....+.|++||.+.+
T Consensus 212 -----------------------------~~~~~~~~~~~~~~~~pdGiavD---~~GnlyVa~~~~g~I~~~dp~~g-- 257 (314)
T d1pjxa_ 212 -----------------------------ENKKVWGHIPGTHEGGADGMDFD---EDNNLLVANWGSSHIEVFGPDGG-- 257 (314)
T ss_dssp -----------------------------EEEEEEEECCCCSSCEEEEEEEB---TTCCEEEEEETTTEEEEECTTCB--
T ss_pred -----------------------------ceeeEEEEccccccccceeeEEe---cCCcEEEEEcCCCEEEEEeCCCC--
Confidence 00011222222 23346789998 89998888877899999998876
Q ss_pred eecccccceeeeccccccceEEEEeecCCCCcE-EEeeCCCeEEEeeC
Q 018858 302 VQTSINNDLLIKNINLNKKVNWLCTTPTESENL-VVCDTSKVVKVYSI 348 (349)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~iw~~ 348 (349)
............+++++|.+ +++.| ++.+.+|.|.-.++
T Consensus 258 -------~~~~~i~~p~~~~t~~afg~-d~~~lyVt~~~~g~i~~~~~ 297 (314)
T d1pjxa_ 258 -------QPKMRIRCPFEKPSNLHFKP-QTKTIFVTEHENNAVWKFEW 297 (314)
T ss_dssp -------SCSEEEECSSSCEEEEEECT-TSSEEEEEETTTTEEEEEEC
T ss_pred -------EEEEEEECCCCCEEEEEEeC-CCCEEEEEECCCCcEEEEEC
Confidence 33333334445788999977 77644 55567788887765
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.27 E-value=6.6e-09 Score=84.63 Aligned_cols=270 Identities=11% Similarity=0.063 Sum_probs=146.9
Q ss_pred CceeeeEEEEecCCCceEEEeCCCCcEEEEECCCC-cEEEEe-ecCCCCeEEEEEecCCCEEEE--EeC-CCeEEEEEcc
Q 018858 14 HKATATCCIASRDRPGFVASSGEDGCICWFDLRSK-DVQLVT-DVGNGPVTSLCFKSGNEDIIY--VSS-GKEVKSFDVH 88 (349)
Q Consensus 14 h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~-~~~~~~-~~~~~~v~~~~~~~~~~~l~~--~~~-dg~i~iwd~~ 88 (349)
....+.-|+|+|+ +++|+++.. +.+..|.+... ...... .........++++++++.++. +.. .+.|..+.+.
T Consensus 38 ~~~~~s~la~s~d-~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~ 115 (365)
T d1jofa_ 38 QDEPISWMTFDHE-RKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp TTCCCSEEEECTT-SSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred CCCCCCEEEEcCC-CCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEcc
Confidence 3445667999998 788777654 56788876543 222221 112334556778888885433 322 3455554432
Q ss_pred CC-Ccc------------cceee-ccCcccceEEEEEccCCCEEEEEcC-CCcEEEEEcCC-ceEe--ceec-cccccce
Q 018858 89 MP-ASW------------RPLES-YNYNKEEINQIVCNPKSSFLACADD-GGDVKIIDIRQ-HCLY--KSLR-AGHSSIC 149 (349)
Q Consensus 89 ~~-~~~------------~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~-~~~~--~~~~-~~~~~~v 149 (349)
.. ... ..... .......+.++.|+|++++++++.. ...|.+|+... +... .... .......
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gP 195 (365)
T d1jofa_ 116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP 195 (365)
T ss_dssp SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred CCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCce
Confidence 11 000 00100 0111234789999999998877654 45688887653 3221 1111 1234567
Q ss_pred eEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEE-EEcCCCeEEEEEccCceeeeecCCCCCCcc
Q 018858 150 SSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICV-VAKGDGVVDVINIESELNISRSKSTTKPLK 228 (349)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 228 (349)
+.++|+| +++++. +...+++|.+|++..........
T Consensus 196 r~i~f~p------------------------------------dg~~~yv~~e~~~~V~v~~~~~~~~~~~~~------- 232 (365)
T d1jofa_ 196 RWVAMHP------------------------------------TGNYLYALMEAGNRICEYVIDPATHMPVYT------- 232 (365)
T ss_dssp EEEEECT------------------------------------TSSEEEEEETTTTEEEEEEECTTTCCEEEE-------
T ss_pred EEEEECC------------------------------------CCceEEEeccCCCEEEEEEecCCCceEEEE-------
Confidence 8889998 677664 45578899999987542110000
Q ss_pred ceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeC------CCeEEEEecCCCcce
Q 018858 229 GSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN------DKLVKVWDCSRFQGV 302 (349)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~------d~~i~vwd~~~~~~~ 302 (349)
....................+......+.++ |+|++|+++.. ...|..|++......
T Consensus 233 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s---pdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~ 295 (365)
T d1jofa_ 233 --------------HHSFPLIPPGIPDRDPETGKGLYRADVCALT---FSGKYMFASSRANKFELQGYIAGFKLRDCGSI 295 (365)
T ss_dssp --------------EEEEESSCTTCCCBCTTTSSBSEEEEEEEEC---TTSSEEEEEEEESSTTSCCEEEEEEECTTSCE
T ss_pred --------------eeeeccccccccccccccccccCCccceEEC---CCCCEEEEEcccCCCccceEEEEEEecCCCce
Confidence 0000000000000000111233456678889 89999887642 234777777654221
Q ss_pred ecccccceeeeccccccceEEEEeecCCCCcEEEee-CCCeEEEeeC
Q 018858 303 QTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCD-TSKVVKVYSI 348 (349)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iw~~ 348 (349)
... ..+............++++|.+|++|+++. .++.|.+|++
T Consensus 296 ~~~---~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~ 339 (365)
T d1jofa_ 296 EKQ---LFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW 339 (365)
T ss_dssp EEE---EEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred eeE---eEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEE
Confidence 100 111222233445677889887888887774 7799999975
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.25 E-value=8e-08 Score=76.50 Aligned_cols=236 Identities=10% Similarity=0.065 Sum_probs=140.8
Q ss_pred eeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCC----CeEEEEEccCCCc
Q 018858 17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG----KEVKSFDVHMPAS 92 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~ 92 (349)
.+..++|.++ +++.++-...+.|..|+.+.++....+.........++++++|+.+++...+ +.+...+......
T Consensus 41 ~lEG~~~D~~-G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~ 119 (319)
T d2dg1a1 41 QLEGLNFDRQ-GQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL 119 (319)
T ss_dssp CEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred CcEeCEECCC-CCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCcee
Confidence 3568899988 7887777788999999988777665555566678899999999877765432 3344444443322
Q ss_pred ccceeeccCcccceEEEEEccCCCEEEEEcCC------CcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCC
Q 018858 93 WRPLESYNYNKEEINQIVCNPKSSFLACADDG------GDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPEN 166 (349)
Q Consensus 93 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 166 (349)
....... ........+++.++|++.++.... +.+..++..... +..+. ..-.....++|+|
T Consensus 120 ~~~~~~~-~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-~~~~~-~~~~~pnGia~s~---------- 186 (319)
T d2dg1a1 120 QDIIEDL-STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-VTPII-QNISVANGIALST---------- 186 (319)
T ss_dssp EEEECSS-SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-EEEEE-EEESSEEEEEECT----------
T ss_pred eeeccCC-CcccCCcceeEEeccceeecccccccccCcceeEEEecccce-eEEEe-eccceeeeeeecc----------
Confidence 1111111 112457789999999876664321 234444443322 22222 1223345677777
Q ss_pred CCCCccccCCceeEEeecCcccccCCCCcEE-EEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeee
Q 018858 167 NGNAGQCYNPAFVHAIAIPDADMLDKTNKIC-VVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI 245 (349)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (349)
+++.| ++-+..+.|..|++....... .
T Consensus 187 --------------------------dg~~lyvad~~~~~I~~~d~~~~g~~~----------------------~---- 214 (319)
T d2dg1a1 187 --------------------------DEKVLWVTETTANRLHRIALEDDGVTI----------------------Q---- 214 (319)
T ss_dssp --------------------------TSSEEEEEEGGGTEEEEEEECTTSSSE----------------------E----
T ss_pred --------------------------ccceEEEecccCCceEEEEEcCCCcee----------------------c----
Confidence 67655 555678899999987421000 0
Q ss_pred eeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeec------ccccc
Q 018858 246 LDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKN------INLNK 319 (349)
Q Consensus 246 ~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~------~~~~~ 319 (349)
...........+ ......++++ .+|++.++....+.|.+||-. ++ ++..+ .++..
T Consensus 215 -----~~~~~~~~~~~~-~~~PdGl~vD---~~G~l~Va~~~~g~V~~~~p~-G~---------~l~~i~~P~~~~~~~~ 275 (319)
T d2dg1a1 215 -----PFGATIPYYFTG-HEGPDSCCID---SDDNLYVAMYGQGRVLVFNKR-GY---------PIGQILIPGRDEGHML 275 (319)
T ss_dssp -----EEEEEEEEECCS-SSEEEEEEEB---TTCCEEEEEETTTEEEEECTT-SC---------EEEEEECTTGGGTCSC
T ss_pred -----cccceeeeccCC-ccceeeeeEc---CCCCEEEEEcCCCEEEEECCC-Cc---------EEEEEeCCCcCCCcCc
Confidence 000011111222 2335789999 899988888889999999964 43 22222 13445
Q ss_pred ceEEEEeecCCCCcEEEee
Q 018858 320 KVNWLCTTPTESENLVVCD 338 (349)
Q Consensus 320 ~v~~~~~~~~~~~~l~~~~ 338 (349)
.++++++.+ +...+++..
T Consensus 276 ~~~~~~~~~-~~~~~~~t~ 293 (319)
T d2dg1a1 276 RSTHPQFIP-GTNQLIICS 293 (319)
T ss_dssp BCCEEEECT-TSCEEEEEE
T ss_pred eeeeEEEeC-CCCEEEEEc
Confidence 678889977 444555543
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.25 E-value=7.4e-08 Score=75.20 Aligned_cols=233 Identities=12% Similarity=0.104 Sum_probs=149.8
Q ss_pred eeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecC------CCCeEEEEEecCCCE-EEEE-eCCCeEEEEEccC
Q 018858 18 ATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVG------NGPVTSLCFKSGNED-IIYV-SSGKEVKSFDVHM 89 (349)
Q Consensus 18 i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~-l~~~-~~dg~i~iwd~~~ 89 (349)
-..++++++ ++++++-..+..|++||.+ ++.+..+... ......+++.++... +++. +.++.|..++..
T Consensus 25 P~gvavd~d-g~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 101 (279)
T d1q7fa_ 25 PSGVAVNAQ-NDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY- 101 (279)
T ss_dssp EEEEEECTT-CCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-
T ss_pred ccEEEEcCC-CCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc-
Confidence 578999998 7888887777899999965 6666655321 123455666655443 3333 234567777653
Q ss_pred CCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceec-cccccceeEEEEccCCCCCCCCCCCC
Q 018858 90 PASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR-AGHSSICSSVQFIPWKPWEGLPENNG 168 (349)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~ 168 (349)
+.....+. .........+++.+++..+++....+.+.+++. +++.+..+. ..+......+++.+
T Consensus 102 g~~~~~~~--~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~------------ 166 (279)
T d1q7fa_ 102 GQFVRKFG--ATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVND------------ 166 (279)
T ss_dssp SCEEEEEC--TTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECS------------
T ss_pred ccceeecC--CCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeecc------------
Confidence 32221111 112345678999999988888887788888885 455555542 13344566677776
Q ss_pred CCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeee
Q 018858 169 NAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQ 248 (349)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (349)
+++.+++....+.|.+||....
T Consensus 167 ------------------------~g~i~v~d~~~~~V~~~d~~G~---------------------------------- 188 (279)
T d1q7fa_ 167 ------------------------KQEIFISDNRAHCVKVFNYEGQ---------------------------------- 188 (279)
T ss_dssp ------------------------SSEEEEEEGGGTEEEEEETTCC----------------------------------
T ss_pred ------------------------ceeEEeeeccccceeeeecCCc----------------------------------
Confidence 7888888888899999987642
Q ss_pred cCceeeeeeeee--cCCCcceEEEEEeeecCCccEEEEeeC-CCeEEEEecCCCcceecccccceeeecc--ccccceEE
Q 018858 249 SGGKRLHLDYSV--GGHTAAASCVAFSMFGERGKYLISGGN-DKLVKVWDCSRFQGVQTSINNDLLIKNI--NLNKKVNW 323 (349)
Q Consensus 249 ~~~~~~~~~~~~--~~h~~~i~~i~~~~~~~~~~~l~s~~~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~v~~ 323 (349)
.+..+ .+.......|+++ ++|+++++-.. ++.|.+|+... +.+..+. ........
T Consensus 189 -------~~~~~g~~g~~~~P~giavD---~~G~i~Vad~~~~~~v~~f~~~G----------~~~~~~~~~~~~~~p~~ 248 (279)
T d1q7fa_ 189 -------YLRQIGGEGITNYPIGVGIN---SNGEILIADNHNNFNLTIFTQDG----------QLISALESKVKHAQCFD 248 (279)
T ss_dssp -------EEEEESCTTTSCSEEEEEEC---TTCCEEEEECSSSCEEEEECTTS----------CEEEEEEESSCCSCEEE
T ss_pred -------eeeeecccccccCCcccccc---cCCeEEEEECCCCcEEEEECCCC----------CEEEEEeCCCCCCCEeE
Confidence 11122 2234456889999 89998877543 45799998543 3333322 22335778
Q ss_pred EEeecCCCCcEEEeeCCCeEEEeeC
Q 018858 324 LCTTPTESENLVVCDTSKVVKVYSI 348 (349)
Q Consensus 324 ~~~~~~~~~~l~~~~~dg~i~iw~~ 348 (349)
+++.| +|. |++++.+..|++|+.
T Consensus 249 vav~~-dG~-l~V~~~n~~v~~fr~ 271 (279)
T d1q7fa_ 249 VALMD-DGS-VVLASKDYRLYIYRY 271 (279)
T ss_dssp EEEET-TTE-EEEEETTTEEEEEEC
T ss_pred EEEeC-CCc-EEEEeCCCeEEEEEe
Confidence 89977 775 566678999999974
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.24 E-value=6e-09 Score=81.04 Aligned_cols=230 Identities=12% Similarity=0.093 Sum_probs=135.1
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeC-CCC--cEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeC-C
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSG-EDG--CICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS-G 79 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~-~dg--~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d 79 (349)
.+...+.+..+...+...+|||| |+.||-.. .++ .+.+.+...+... .+..+........|+|+|+.++.... +
T Consensus 27 dG~~~~~l~~~~~~~~sP~wSPD-Gk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i~~~~~~~ 104 (269)
T d2hqsa1 27 DGYNQFVVHRSPQPLMSPAWSPD-GSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKT 104 (269)
T ss_dssp TSCSCEEEEEESSCEEEEEECTT-SSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTT
T ss_pred CCCCcEEEecCCCceeeeEECCC-CCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCeeeEeeecC
Confidence 45667777767788889999999 77777443 332 4666676666543 44456778889999999999887664 3
Q ss_pred CeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEE-EEcCCCc--EEEEEcCCceEeceeccccccceeEEEEcc
Q 018858 80 KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLA-CADDGGD--VKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 80 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
+...++....... .. ..............+++++..++ +...++. |.+.++..+.... +. ..........|+|
T Consensus 105 ~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~-~~-~~~~~~~~~~~sp 180 (269)
T d2hqsa1 105 GSLNLYVMDLASG-QI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-IT-WEGSQNQDADVSS 180 (269)
T ss_dssp SSCEEEEEETTTC-CE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-CC-CSSSEEEEEEECT
T ss_pred Cccceeecccccc-cc-eeeeeccccccccccccccccceecccccCCceEeeeeccccccee-ee-ccccccccccccc
Confidence 3333333322111 11 11111223444556777665544 4444554 5555665553322 22 3455666778888
Q ss_pred CCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcC-CCeEEEEEccCceeeeecCCCCCCccceeeeec
Q 018858 157 WKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKG-DGVVDVINIESELNISRSKSTTKPLKGSQSTSK 235 (349)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (349)
+++.++..+. .+...+|......
T Consensus 181 ------------------------------------dg~~~~~~~~~~~~~~i~~~~~~~-------------------- 204 (269)
T d2hqsa1 181 ------------------------------------DGKFMVMVSSNGGQQHIAKQDLAT-------------------- 204 (269)
T ss_dssp ------------------------------------TSSEEEEEEECSSCEEEEEEETTT--------------------
T ss_pred ------------------------------------ccceeEEEeecCCceeeeEeeccc--------------------
Confidence 6776665543 4444444433210
Q ss_pred cccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeC---CCeEEEEecCCCcceecccccceee
Q 018858 236 VNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGN---DKLVKVWDCSRFQGVQTSINNDLLI 312 (349)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~---d~~i~vwd~~~~~~~~~~~~~~~~~ 312 (349)
.. .....+........|+ |||++|+-.+. ...|+++++... ...
T Consensus 205 -------------------~~-~~~~~~~~~~~~p~~S---PDG~~i~f~s~~~~~~~l~~~~~dg~----------~~~ 251 (269)
T d2hqsa1 205 -------------------GG-VQVLSSTFLDETPSLA---PNGTMVIYSSSQGMGSVLNLVSTDGR----------FKA 251 (269)
T ss_dssp -------------------CC-EEECCCSSSCEEEEEC---TTSSEEEEEEEETTEEEEEEEETTSC----------CEE
T ss_pred -------------------cc-ceEeecCccccceEEC---CCCCEEEEEEcCCCCcEEEEEECCCC----------CEE
Confidence 11 1122234455677899 89998875543 357899999875 233
Q ss_pred eccccccceEEEEeec
Q 018858 313 KNINLNKKVNWLCTTP 328 (349)
Q Consensus 313 ~~~~~~~~v~~~~~~~ 328 (349)
.+....+.+...+|+|
T Consensus 252 ~lt~~~g~~~~p~WSP 267 (269)
T d2hqsa1 252 RLPATDGQVKFPAWSP 267 (269)
T ss_dssp ECCCSSSEEEEEEECC
T ss_pred EEeCCCCcEEeEEeCC
Confidence 4445566778888987
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.17 E-value=1.9e-08 Score=79.67 Aligned_cols=215 Identities=7% Similarity=-0.013 Sum_probs=132.6
Q ss_pred cEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEE
Q 018858 49 DVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVK 128 (349)
Q Consensus 49 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 128 (349)
+.+..+.. ...+..++++|+|+++++...+++|..|+... + ...+.. ....+.+++|.++++++++...++.+.
T Consensus 19 ~v~~~~p~-~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~-~~~~~~---~~~~~~gla~~~dG~l~v~~~~~~~~~ 92 (302)
T d2p4oa1 19 KIITSFPV-NTFLENLASAPDGTIFVTNHEVGEIVSITPDG-N-QQIHAT---VEGKVSGLAFTSNGDLVATGWNADSIP 92 (302)
T ss_dssp EEEEEECT-TCCEEEEEECTTSCEEEEETTTTEEEEECTTC-C-EEEEEE---CSSEEEEEEECTTSCEEEEEECTTSCE
T ss_pred cEEEECCC-CCCcCCEEECCCCCEEEEeCCCCEEEEEeCCC-C-EEEEEc---CCCCcceEEEcCCCCeEEEecCCceEE
Confidence 34445543 23578999999999999988899988887553 2 222222 346789999999999999888888888
Q ss_pred EEEcCCc--eEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeE
Q 018858 129 IIDIRQH--CLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVV 206 (349)
Q Consensus 129 i~d~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 206 (349)
.++.... ................+.+.+ +++++++.+.++.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~------------------------------------~g~~~v~~~~~~~i 136 (302)
T d2p4oa1 93 VVSLVKSDGTVETLLTLPDAIFLNGITPLS------------------------------------DTQYLTADSYRGAI 136 (302)
T ss_dssp EEEEECTTSCEEEEEECTTCSCEEEEEESS------------------------------------SSEEEEEETTTTEE
T ss_pred EEEecccccceeeccccCCccccceeEEcc------------------------------------CCCEEeeccccccc
Confidence 8876532 221111112334566777777 78888888888999
Q ss_pred EEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEee
Q 018858 207 DVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGG 286 (349)
Q Consensus 207 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~ 286 (349)
..++...+......... . .............+.+.++ .+.++++.+
T Consensus 137 ~~~~~~~~~~~~~~~~~------------~------------------~~~~~~~~~~~~~ngi~~~----~~~l~~~~~ 182 (302)
T d2p4oa1 137 WLIDVVQPSGSIWLEHP------------M------------------LARSNSESVFPAANGLKRF----GNFLYVSNT 182 (302)
T ss_dssp EEEETTTTEEEEEEECG------------G------------------GSCSSTTCCSCSEEEEEEE----TTEEEEEET
T ss_pred eeeeccCCcceeEecCC------------c------------------cceeeccCccccccccccc----CCceeeecC
Confidence 88888764211110000 0 0000111122345677766 345666667
Q ss_pred CCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 287 NDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 287 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
..+.|+.++........ . ............+++.+ +|++.++...++.|..++
T Consensus 183 ~~~~i~~~~~~~~~~~~------~-~~~~~~~~~pdgia~d~-dG~l~va~~~~~~V~~i~ 235 (302)
T d2p4oa1 183 EKMLLLRIPVDSTDKPG------E-PEIFVEQTNIDDFAFDV-EGNLYGATHIYNSVVRIA 235 (302)
T ss_dssp TTTEEEEEEBCTTSCBC------C-CEEEEESCCCSSEEEBT-TCCEEEECBTTCCEEEEC
T ss_pred CCCeEEecccccccccc------c-cccccCCCCCcceEECC-CCCEEEEEcCCCcEEEEC
Confidence 78888888877643211 0 01111233456788877 777666666778777765
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.12 E-value=2.1e-07 Score=72.04 Aligned_cols=212 Identities=13% Similarity=0.123 Sum_probs=118.9
Q ss_pred cEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCC---eEEEEEccCCCcccceeeccCcccceEEEEEccCC
Q 018858 39 CICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGK---EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKS 115 (349)
Q Consensus 39 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 115 (349)
.|.|-|.+....... ..+...+...+|||||+.||...... .+.+.+...+.. . ....+........|+|++
T Consensus 20 ~l~i~d~dG~~~~~l-~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~spdg 94 (269)
T d2hqsa1 20 ELRVSDYDGYNQFVV-HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-R---QVASFPRHNGAPAFSPDG 94 (269)
T ss_dssp EEEEEETTSCSCEEE-EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-E---EEECCSSCEEEEEECTTS
T ss_pred EEEEEcCCCCCcEEE-ecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-e---EEeeeecccccceecCCC
Confidence 577878765554433 34567788999999999999876442 466666665432 2 222234677889999999
Q ss_pred CEEEEEcC-CCc--EEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCC
Q 018858 116 SFLACADD-GGD--VKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDK 192 (349)
Q Consensus 116 ~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (349)
+.++.... .+. +..+............ .........++++
T Consensus 95 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----------------------------------- 137 (269)
T d2hqsa1 95 SKLAFALSKTGSLNLYVMDLASGQIRQVTD--GRSNNTEPTWFPD----------------------------------- 137 (269)
T ss_dssp SEEEEEECTTSSCEEEEEETTTCCEEECCC--CSSCEEEEEECTT-----------------------------------
T ss_pred CeeeEeeecCCccceeecccccccceeeee--ccccccccccccc-----------------------------------
Confidence 88876543 333 2223322332222222 2222333444442
Q ss_pred CCcEEEEEcCCCe--EEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEE
Q 018858 193 TNKICVVAKGDGV--VDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCV 270 (349)
Q Consensus 193 ~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i 270 (349)
....+++...+|. |.+.++... ....+..+.......
T Consensus 138 ~~~~~~~~~~~g~~~i~~~~~~~~-----------------------------------------~~~~~~~~~~~~~~~ 176 (269)
T d2hqsa1 138 SQNLAFTSDQAGRPQVYKVNINGG-----------------------------------------APQRITWEGSQNQDA 176 (269)
T ss_dssp SSEEEEEECTTSSCEEEEEETTSS-----------------------------------------CCEECCCSSSEEEEE
T ss_pred cccceecccccCCceEeeeecccc-----------------------------------------cceeeeccccccccc
Confidence 2334455555554 444444432 112233345566677
Q ss_pred EEeeecCCccEEEEeeCC-Ce--EEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeC---CCeEE
Q 018858 271 AFSMFGERGKYLISGGND-KL--VKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDT---SKVVK 344 (349)
Q Consensus 271 ~~~~~~~~~~~l~s~~~d-~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~ 344 (349)
.++ |+++.++..+.+ +. +.+.+..... . .............|+| ||+.|+-.+. ...++
T Consensus 177 ~~s---pdg~~~~~~~~~~~~~~i~~~~~~~~~----------~-~~~~~~~~~~~p~~SP-DG~~i~f~s~~~~~~~l~ 241 (269)
T d2hqsa1 177 DVS---SDGKFMVMVSSNGGQQHIAKQDLATGG----------V-QVLSSTFLDETPSLAP-NGTMVIYSSSQGMGSVLN 241 (269)
T ss_dssp EEC---TTSSEEEEEEECSSCEEEEEEETTTCC----------E-EECCCSSSCEEEEECT-TSSEEEEEEEETTEEEEE
T ss_pred ccc---cccceeEEEeecCCceeeeEeeccccc----------c-eEeecCccccceEECC-CCCEEEEEEcCCCCcEEE
Confidence 888 899988876644 34 4444544431 1 2223344556678988 8887765543 34677
Q ss_pred EeeC
Q 018858 345 VYSI 348 (349)
Q Consensus 345 iw~~ 348 (349)
++++
T Consensus 242 ~~~~ 245 (269)
T d2hqsa1 242 LVST 245 (269)
T ss_dssp EEET
T ss_pred EEEC
Confidence 7765
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=9.7e-08 Score=80.06 Aligned_cols=137 Identities=7% Similarity=0.044 Sum_probs=91.7
Q ss_pred EEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecC---CCCeEEEEEecCCCEEEEEe---------CCCeEEEEEcc
Q 018858 21 CIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVG---NGPVTSLCFKSGNEDIIYVS---------SGKEVKSFDVH 88 (349)
Q Consensus 21 ~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~---------~dg~i~iwd~~ 88 (349)
..|.++ +.++.. ..+|.|.+||+.+++....+... ...+....||||+++++... ..+.+.++|+.
T Consensus 22 ~~W~~~-~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~ 99 (465)
T d1xfda1 22 AKWISD-TEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIP 99 (465)
T ss_dssp CCBSSS-SCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESS
T ss_pred CEEeCC-CcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEcc
Confidence 357777 666554 55789999999888764444432 24567788999999988764 34789999999
Q ss_pred CCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccc-----------------eeE
Q 018858 89 MPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSI-----------------CSS 151 (349)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----------------v~~ 151 (349)
++.. ..+.........+....|+|+|+.+|... ++.|++.+..++..++....+.... -.+
T Consensus 100 ~~~~-~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a 177 (465)
T d1xfda1 100 HGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIA 177 (465)
T ss_dssp SCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEE
T ss_pred CCce-eeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccce
Confidence 7653 33333333344566789999999998765 4678888887665444332122111 246
Q ss_pred EEEccCCCCC
Q 018858 152 VQFIPWKPWE 161 (349)
Q Consensus 152 ~~~~~~~~~~ 161 (349)
+-|+|+|.++
T Consensus 178 ~~WSPDgk~i 187 (465)
T d1xfda1 178 HWWSPDGTRL 187 (465)
T ss_dssp EEECTTSSEE
T ss_pred EEECCCCCeE
Confidence 7799998766
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.05 E-value=1.3e-06 Score=68.49 Aligned_cols=231 Identities=11% Similarity=0.007 Sum_probs=144.8
Q ss_pred eEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceee
Q 018858 19 TCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLES 98 (349)
Q Consensus 19 ~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 98 (349)
-+..|++.++.+.++=-..+.|..||.++++.. .+. ....+.++++.+++.++++ +.+ .+.++|..+++. ..+..
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~-~~l~~ 95 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVL-TLHAE 95 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCE-EEEEC
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEEEE-EeC-ccEEeeccccee-eEEee
Confidence 456788865666666556789999999887653 333 3457889999988876654 544 588999987653 22222
Q ss_pred ccC--cccceEEEEEccCCCEEEEEcC----CCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCcc
Q 018858 99 YNY--NKEEINQIVCNPKSSFLACADD----GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQ 172 (349)
Q Consensus 99 ~~~--~~~~v~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 172 (349)
... ....+..+.+.|+|++.++... .+.-.+|.+..++...... .-.....++|++
T Consensus 96 ~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~--~~~~~Ng~~~s~---------------- 157 (295)
T d2ghsa1 96 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA--DISIPNSICFSP---------------- 157 (295)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE--EESSEEEEEECT----------------
T ss_pred eecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEee--ccCCcceeeecC----------------
Confidence 211 1235788999999987665432 2345666666665544433 223456777877
Q ss_pred ccCCceeEEeecCcccccCCCCc-EEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCc
Q 018858 173 CYNPAFVHAIAIPDADMLDKTNK-ICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGG 251 (349)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (349)
+++ ++++-+..+.|..|++....... .
T Consensus 158 --------------------d~~~l~~~dt~~~~I~~~~~d~~~~~~--------------------------------~ 185 (295)
T d2ghsa1 158 --------------------DGTTGYFVDTKVNRLMRVPLDARTGLP--------------------------------T 185 (295)
T ss_dssp --------------------TSCEEEEEETTTCEEEEEEBCTTTCCB--------------------------------S
T ss_pred --------------------CCceEEEeecccceeeEeeeccccccc--------------------------------c
Confidence 565 44566678889988876321000 0
Q ss_pred eeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCC
Q 018858 252 KRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTES 331 (349)
Q Consensus 252 ~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 331 (349)
..........+..+....++++ .+|++.++.-..+.|..||... +++..+.-....+++++|--++.
T Consensus 186 ~~~~~~~~~~~~~g~pdG~~vD---~~GnlWva~~~~g~V~~~dp~G----------~~~~~i~lP~~~~T~~~FGG~d~ 252 (295)
T d2ghsa1 186 GKAEVFIDSTGIKGGMDGSVCD---AEGHIWNARWGEGAVDRYDTDG----------NHIARYEVPGKQTTCPAFIGPDA 252 (295)
T ss_dssp SCCEEEEECTTSSSEEEEEEEC---TTSCEEEEEETTTEEEEECTTC----------CEEEEEECSCSBEEEEEEESTTS
T ss_pred cceEEEeccCcccccccceEEc---CCCCEEeeeeCCCceEEecCCC----------cEeeEecCCCCceEEEEEeCCCC
Confidence 0001122333445567889998 8998888777778999999654 44444443345789999975565
Q ss_pred CcEEEe
Q 018858 332 ENLVVC 337 (349)
Q Consensus 332 ~~l~~~ 337 (349)
+.|+..
T Consensus 253 ~~LyvT 258 (295)
T d2ghsa1 253 SRLLVT 258 (295)
T ss_dssp CEEEEE
T ss_pred CEEEEE
Confidence 555544
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.01 E-value=7.8e-08 Score=74.21 Aligned_cols=194 Identities=7% Similarity=-0.009 Sum_probs=126.6
Q ss_pred eeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCccccee
Q 018858 18 ATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLE 97 (349)
Q Consensus 18 i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 97 (349)
...++++++ ++++++....+.+++++..+...+.... .......+++.++++++++-.....+..++...... ...
T Consensus 59 p~gvav~~~-g~i~v~d~~~~~i~~~~~~~~~~~~~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~--~~~ 134 (260)
T d1rwia_ 59 PQGLAVDGA-GTVYVTDFNNRVVTLAAGSNNQTVLPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ--TVL 134 (260)
T ss_dssp CCCEEECTT-CCEEEEETTTEEEEECTTCSCCEECCCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSC--EEC
T ss_pred ceEEEEcCC-CCEEEeeeeeceeeeeeeccceeeeeee-eeeecccccccccceeEeecccccccccccccccee--eee
Confidence 466788887 7777777777777776655555443332 235578999999998777766667777776654221 111
Q ss_pred eccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCc
Q 018858 98 SYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPA 177 (349)
Q Consensus 98 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (349)
... .......+++.++++.+++...++.|..+|........... ........+++.+
T Consensus 135 ~~~-~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~-~~~~~p~gi~~d~--------------------- 191 (260)
T d1rwia_ 135 PFT-GLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPF-TDITAPWGIAVDE--------------------- 191 (260)
T ss_dssp CCC-SCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCC-SSCCSEEEEEECT---------------------
T ss_pred eec-ccCCcceeeecCCCCEeeeccccccccccccccceeeeeec-cccCCCccceeee---------------------
Confidence 111 12456789999999988888888889999987544332222 2334567788887
Q ss_pred eeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeee
Q 018858 178 FVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLD 257 (349)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (349)
+++++++....+.|..++..... .
T Consensus 192 ---------------~g~l~vsd~~~~~i~~~~~~~~~-----------------------------------------~ 215 (260)
T d1rwia_ 192 ---------------AGTVYVTEHNTNQVVKLLAGSTT-----------------------------------------S 215 (260)
T ss_dssp ---------------TCCEEEEETTTTEEEEECTTCSC-----------------------------------------C
T ss_pred ---------------eeeeeeeecCCCEEEEEeCCCCe-----------------------------------------E
Confidence 78888887788888888765421 0
Q ss_pred eee-cCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecC
Q 018858 258 YSV-GGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCS 297 (349)
Q Consensus 258 ~~~-~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~ 297 (349)
..+ ...-.....|+++ ++|+++++-..++.|+.++..
T Consensus 216 ~~~~~~~~~~P~~i~~d---~~g~l~vad~~~~rI~~i~~~ 253 (260)
T d1rwia_ 216 TVLPFTGLNTPLAVAVD---SDRTVYVADRGNDRVVKLTSL 253 (260)
T ss_dssp EECCCCSCCCEEEEEEC---TTCCEEEEEGGGTEEEEECCC
T ss_pred EEEccCCCCCeEEEEEe---CCCCEEEEECCCCEEEEEeCC
Confidence 111 1112346789998 888888876777777665543
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.87 E-value=6.7e-07 Score=70.80 Aligned_cols=196 Identities=11% Similarity=0.094 Sum_probs=117.8
Q ss_pred eEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCC----CCeEEEEEecCCCEEEEEeC---------------C
Q 018858 19 TCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGN----GPVTSLCFKSGNEDIIYVSS---------------G 79 (349)
Q Consensus 19 ~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~---------------d 79 (349)
..++|.++ ++.++++.....|...+.+............ .....+++.++|+..++-.. .
T Consensus 74 ~Gl~~~~d-g~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~ 152 (314)
T d1pjxa_ 74 AGCQCDRD-ANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKF 152 (314)
T ss_dssp EEEEECSS-SSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSC
T ss_pred eeEEEeCC-CCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCC
Confidence 46888888 6767766666678888876543221111111 13567899999987776421 2
Q ss_pred CeEEEEEccCCCcccceeeccCcccceEEEEEccCCC-----EEEEEcCCCcEEEEEcCCceEec------eeccccccc
Q 018858 80 KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSS-----FLACADDGGDVKIIDIRQHCLYK------SLRAGHSSI 148 (349)
Q Consensus 80 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~l~~~~~dg~i~i~d~~~~~~~~------~~~~~~~~~ 148 (349)
|.|..++.. ++....... -.....++|+|+++ ++++-+..+.|..||+.....+. .+.......
T Consensus 153 G~v~~~~~d-g~~~~~~~~----~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~ 227 (314)
T d1pjxa_ 153 GSIYCFTTD-GQMIQVDTA----FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGG 227 (314)
T ss_dssp EEEEEECTT-SCEEEEEEE----ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCE
T ss_pred ceEEEEeec-CceeEeeCC----cceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcccccccc
Confidence 334444332 221111111 13356789988764 44555677889999876332211 111011122
Q ss_pred eeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCcc
Q 018858 149 CSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLK 228 (349)
Q Consensus 149 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 228 (349)
.-.+++.+ +|+++++....+.|.+||.+.+
T Consensus 228 pdGiavD~------------------------------------~GnlyVa~~~~g~I~~~dp~~g-------------- 257 (314)
T d1pjxa_ 228 ADGMDFDE------------------------------------DNNLLVANWGSSHIEVFGPDGG-------------- 257 (314)
T ss_dssp EEEEEEBT------------------------------------TCCEEEEEETTTEEEEECTTCB--------------
T ss_pred ceeeEEec------------------------------------CCcEEEEEcCCCEEEEEeCCCC--------------
Confidence 34566665 7888877777899999998753
Q ss_pred ceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCcc-EEEEeeCCCeEEEEecCCC
Q 018858 229 GSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGK-YLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~ 299 (349)
.....+......+++++|. ++++ ++++.+.++.|+..++...
T Consensus 258 --------------------------~~~~~i~~p~~~~t~~afg---~d~~~lyVt~~~~g~i~~~~~~~~ 300 (314)
T d1pjxa_ 258 --------------------------QPKMRIRCPFEKPSNLHFK---PQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp --------------------------SCSEEEECSSSCEEEEEEC---TTSSEEEEEETTTTEEEEEECSSC
T ss_pred --------------------------EEEEEEECCCCCEEEEEEe---CCCCEEEEEECCCCcEEEEECCCC
Confidence 2222333334567899998 8886 5567777899988887664
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.85 E-value=3.1e-06 Score=68.42 Aligned_cols=78 Identities=8% Similarity=0.086 Sum_probs=54.3
Q ss_pred CCeEEEEEecCCCEEEEEeC-CCeEEEEEccCCCcccceeec--cCcccceEEEEEccCCCEEEEE-cCCCcEEEEEcCC
Q 018858 59 GPVTSLCFKSGNEDIIYVSS-GKEVKSFDVHMPASWRPLESY--NYNKEEINQIVCNPKSSFLACA-DDGGDVKIIDIRQ 134 (349)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~ 134 (349)
..+.++.|+|+|++++++.. ...|.+|+............. .........++|+|+++++.+. ..++.|.+|++..
T Consensus 145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~ 224 (365)
T d1jofa_ 145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP 224 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecC
Confidence 34789999999999888764 457888887643222222221 1223568899999999887554 4678899999875
Q ss_pred ce
Q 018858 135 HC 136 (349)
Q Consensus 135 ~~ 136 (349)
++
T Consensus 225 ~~ 226 (365)
T d1jofa_ 225 AT 226 (365)
T ss_dssp TT
T ss_pred CC
Confidence 43
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.83 E-value=6.1e-06 Score=63.97 Aligned_cols=194 Identities=11% Similarity=0.106 Sum_probs=123.3
Q ss_pred EEEecCCCceEEE-eCCCCcEEEEECCCCcEEEEeec-CCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceee
Q 018858 21 CIASRDRPGFVAS-SGEDGCICWFDLRSKDVQLVTDV-GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLES 98 (349)
Q Consensus 21 ~~~~~~~~~~l~t-~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 98 (349)
+++.++.+..+++ .+.++.|..++. .++....+.. .......+++.++++.+++....+.+.+++.. ++....+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g- 151 (279)
T d1q7fa_ 75 VAVVRNSGDIIVTERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFG- 151 (279)
T ss_dssp EEEETTTTEEEEEECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEE-
T ss_pred ccccccccccceeccCCccccccccc-cccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-Cceeeccc-
Confidence 4444443444443 334456777765 4555555532 34567789999999988887777888888754 22222221
Q ss_pred ccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceec-cccccceeEEEEccCCCCCCCCCCCCCCccccCCc
Q 018858 99 YNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLR-AGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPA 177 (349)
Q Consensus 99 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (349)
...+......+++.++++.+++....+.|++||.. ++.+.++. .+.......+++.+
T Consensus 152 ~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~--------------------- 209 (279)
T d1q7fa_ 152 CSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINS--------------------- 209 (279)
T ss_dssp CTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECT---------------------
T ss_pred ccccccccceeeeccceeEEeeeccccceeeeecC-CceeeeecccccccCCccccccc---------------------
Confidence 12344567889999999888888888999999964 55555553 12334466777777
Q ss_pred eeEEeecCcccccCCCCcEEEEEc-CCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeee
Q 018858 178 FVHAIAIPDADMLDKTNKICVVAK-GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHL 256 (349)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (349)
+++++++-. .++.|.+|+... +.
T Consensus 210 ---------------~G~i~Vad~~~~~~v~~f~~~G-----------------------------------------~~ 233 (279)
T d1q7fa_ 210 ---------------NGEILIADNHNNFNLTIFTQDG-----------------------------------------QL 233 (279)
T ss_dssp ---------------TCCEEEEECSSSCEEEEECTTS-----------------------------------------CE
T ss_pred ---------------CCeEEEEECCCCcEEEEECCCC-----------------------------------------CE
Confidence 788776644 345788887543 11
Q ss_pred eeeec--CCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCC
Q 018858 257 DYSVG--GHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRF 299 (349)
Q Consensus 257 ~~~~~--~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 299 (349)
+..+. ........+++. ++|.++++ +.++.|++|.....
T Consensus 234 ~~~~~~~~~~~~p~~vav~---~dG~l~V~-~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 234 ISALESKVKHAQCFDVALM---DDGSVVLA-SKDYRLYIYRYVQL 274 (279)
T ss_dssp EEEEEESSCCSCEEEEEEE---TTTEEEEE-ETTTEEEEEECSCC
T ss_pred EEEEeCCCCCCCEeEEEEe---CCCcEEEE-eCCCeEEEEEeeee
Confidence 11111 122346788999 89876654 56899999998764
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.77 E-value=1.1e-05 Score=63.70 Aligned_cols=206 Identities=11% Similarity=0.050 Sum_probs=114.8
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCC----CcEEEEEc
Q 018858 57 GNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDG----GDVKIIDI 132 (349)
Q Consensus 57 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d~ 132 (349)
....+..++|.++|+..++-...+.|..|+.+.+...... .........+++.++|+++++...+ +.+...+.
T Consensus 38 ~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~---~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~ 114 (319)
T d2dg1a1 38 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF---VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATE 114 (319)
T ss_dssp SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE---ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECT
T ss_pred CCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEE---eCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcC
Confidence 4455678999999997777777889998887754322222 2223567899999999888765432 33444554
Q ss_pred CCceEeceecc-ccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCC------Ce
Q 018858 133 RQHCLYKSLRA-GHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGD------GV 205 (349)
Q Consensus 133 ~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------g~ 205 (349)
........... ........+++.+ +|++.++.... +.
T Consensus 115 ~~~~~~~~~~~~~~~~~~nd~~~d~------------------------------------~G~l~vtd~~~~~~~~~g~ 158 (319)
T d2dg1a1 115 NGDNLQDIIEDLSTAYCIDDMVFDS------------------------------------KGGFYFTDFRGYSTNPLGG 158 (319)
T ss_dssp TSCSCEEEECSSSSCCCEEEEEECT------------------------------------TSCEEEEECCCBTTBCCEE
T ss_pred CCceeeeeccCCCcccCCcceeEEe------------------------------------ccceeecccccccccCcce
Confidence 44433222220 1123355566666 67755543211 11
Q ss_pred EEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEE-EE
Q 018858 206 VDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYL-IS 284 (349)
Q Consensus 206 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l-~s 284 (349)
+..+ .++++.+ ..+...-...+.++|+ ++++.| ++
T Consensus 159 v~~~------------------------~~dg~~~-----------------~~~~~~~~~pnGia~s---~dg~~lyva 194 (319)
T d2dg1a1 159 VYYV------------------------SPDFRTV-----------------TPIIQNISVANGIALS---TDEKVLWVT 194 (319)
T ss_dssp EEEE------------------------CTTSCCE-----------------EEEEEEESSEEEEEEC---TTSSEEEEE
T ss_pred eEEE------------------------eccccee-----------------EEEeeccceeeeeeec---cccceEEEe
Confidence 2222 2222211 1111112345789999 888865 45
Q ss_pred eeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEeecCCCCcEEEeeCCCeEEEee
Q 018858 285 GGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTTPTESENLVVCDTSKVVKVYS 347 (349)
Q Consensus 285 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 347 (349)
-+..+.|+.|++............... ...........+++.+ +|++.++....+.|.+|+
T Consensus 195 d~~~~~I~~~d~~~~g~~~~~~~~~~~-~~~~~~~~PdGl~vD~-~G~l~Va~~~~g~V~~~~ 255 (319)
T d2dg1a1 195 ETTANRLHRIALEDDGVTIQPFGATIP-YYFTGHEGPDSCCIDS-DDNLYVAMYGQGRVLVFN 255 (319)
T ss_dssp EGGGTEEEEEEECTTSSSEEEEEEEEE-EECCSSSEEEEEEEBT-TCCEEEEEETTTEEEEEC
T ss_pred cccCCceEEEEEcCCCceeccccceee-eccCCccceeeeeEcC-CCCEEEEEcCCCEEEEEC
Confidence 566789999998753211100000111 1111223356788877 787667667888998886
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.64 E-value=1.2e-06 Score=73.37 Aligned_cols=142 Identities=11% Similarity=-0.031 Sum_probs=90.5
Q ss_pred EEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcC---------CCcEEEEEcCC
Q 018858 64 LCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD---------GGDVKIIDIRQ 134 (349)
Q Consensus 64 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~ 134 (349)
..|.+++.++.. ..+|.|.+||+.+++....+.........+....|+||+++++.... .+.+.++|+.+
T Consensus 22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~ 100 (465)
T d1xfda1 22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH 100 (465)
T ss_dssp CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred CEEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence 358888776543 45788999999887543333322222345677889999999887643 46789999987
Q ss_pred ceEeceec-cccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC
Q 018858 135 HCLYKSLR-AGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 213 (349)
Q Consensus 135 ~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 213 (349)
++...... ......+....|+| +|+.+|... ++.|.+.+...
T Consensus 101 ~~~~~l~~~~~~~~~l~~~~wSP------------------------------------DG~~iafv~-~~nl~~~~~~~ 143 (465)
T d1xfda1 101 GDPQSLDPPEVSNAKLQYAGWGP------------------------------------KGQQLIFIF-ENNIYYCAHVG 143 (465)
T ss_dssp CCCEECCCTTCCSCCCSBCCBCS------------------------------------STTCEEEEE-TTEEEEESSSS
T ss_pred CceeeccCccCCccccceeeecc------------------------------------CCceEEEEe-cceEEEEecCC
Confidence 76432211 02344566678888 677776654 56788887776
Q ss_pred ceeeeecCCCCCC-----------------ccceeeeeccccEEEEe
Q 018858 214 ELNISRSKSTTKP-----------------LKGSQSTSKVNIRDAEM 243 (349)
Q Consensus 214 ~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~ 243 (349)
+............ .-..+-|||||+.||+.
T Consensus 144 ~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~ 190 (465)
T d1xfda1 144 KQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYA 190 (465)
T ss_dssp SCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEE
T ss_pred CceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEE
Confidence 5544433222111 11356699999999964
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.62 E-value=4.8e-05 Score=58.54 Aligned_cols=96 Identities=11% Similarity=0.106 Sum_probs=62.2
Q ss_pred EecC--CCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeC-C-----CeEEEEEccCCCccc
Q 018858 23 ASRD--RPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSS-G-----KEVKSFDVHMPASWR 94 (349)
Q Consensus 23 ~~~~--~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-----g~i~iwd~~~~~~~~ 94 (349)
.+|+ +..+++++ +|.|.+.|+..++.. .+..+.+.+...+|||||+.||.... + ..|.+++...++..+
T Consensus 6 ~sPdi~G~~v~f~~--~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~ 82 (281)
T d1k32a2 6 LNPDIHGDRIIFVC--CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR 82 (281)
T ss_dssp EEEEEETTEEEEEE--TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred cCCCCCCCEEEEEe--CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence 4565 54444443 356999999988764 45556777889999999999987642 1 247777776654322
Q ss_pred ceeecc----CcccceEEEEEccCCCEEEEEc
Q 018858 95 PLESYN----YNKEEINQIVCNPKSSFLACAD 122 (349)
Q Consensus 95 ~~~~~~----~~~~~v~~~~~~~~~~~l~~~~ 122 (349)
+.... .........+|+|+++.++...
T Consensus 83 -lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 113 (281)
T d1k32a2 83 -ITYFSGKSTGRRMFTDVAGFDPDGNLIISTD 113 (281)
T ss_dssp -CCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred -eeecCCCccCccccccccccCCCCCEEEEEE
Confidence 21111 1123456788999999888653
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.29 E-value=0.00042 Score=55.30 Aligned_cols=124 Identities=15% Similarity=0.130 Sum_probs=79.9
Q ss_pred EEEeCCCCcEEEEECCCCcEEEEeecCC---------------------------------------CCe--EEEEEe--
Q 018858 31 VASSGEDGCICWFDLRSKDVQLVTDVGN---------------------------------------GPV--TSLCFK-- 67 (349)
Q Consensus 31 l~t~~~dg~i~vwd~~~~~~~~~~~~~~---------------------------------------~~v--~~~~~~-- 67 (349)
|.+|+..|.++|+-+.+++.+..+...+ +.. -.+.+.
T Consensus 16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG 95 (459)
T d1fwxa2 16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 95 (459)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence 6688899999999999988877664210 011 123443
Q ss_pred -cCCCEEEEEe-CCCeEEEEEccCCCcccceeeccCcccceEEEEEc--cCCCEEEEEcCCC------------------
Q 018858 68 -SGNEDIIYVS-SGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCN--PKSSFLACADDGG------------------ 125 (349)
Q Consensus 68 -~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg------------------ 125 (349)
+||+++++.. .+.+|.+-|+++.+..+.+.. + ....+..+... |+..+++.++++.
T Consensus 96 tyDGrylFVNDkan~RVAvIdl~~fkt~kIi~i-P-n~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~ 173 (459)
T d1fwxa2 96 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEI-P-NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN 173 (459)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEEC-S-SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEE
T ss_pred ccceeEEEEEcCCCceEEEEECcceeeeEEEec-C-CCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcce
Confidence 2788887765 568999999998665443332 2 12345555554 4556777766632
Q ss_pred cEEEEEcCCceEeceeccccccceeEEEEccCC
Q 018858 126 DVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWK 158 (349)
Q Consensus 126 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 158 (349)
.+.++|..+.+...++. -......++++|+|
T Consensus 174 ~~t~ID~~tm~V~~QV~--V~g~ld~~~~s~dG 204 (459)
T d1fwxa2 174 VFTAVDADKWEVAWQVL--VSGNLDNCDADYEG 204 (459)
T ss_dssp EEEEEETTTTEEEEEEE--ESSCCCCEEECSSS
T ss_pred EEEEEecCCceEEEEee--eCCChhccccCCCC
Confidence 36678888888777666 33456778888843
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.22 E-value=0.00057 Score=52.95 Aligned_cols=155 Identities=10% Similarity=0.041 Sum_probs=96.2
Q ss_pred ceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeec--C--CCCeEEEEEecCCCEEEEEeC----CCeEEEEE
Q 018858 15 KATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDV--G--NGPVTSLCFKSGNEDIIYVSS----GKEVKSFD 86 (349)
Q Consensus 15 ~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~--~--~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd 86 (349)
...+.++++.++ +.++++. .+ .|.++|..+++....... . ...+..+.+.|+|++.++... .+.-.+|.
T Consensus 58 ~~~~~~i~~~~d-g~l~va~-~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~ 134 (295)
T d2ghsa1 58 PFMGSALAKISD-SKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYH 134 (295)
T ss_dssp SSCEEEEEEEET-TEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEE
T ss_pred CCCcEEEEEecC-CCEEEEE-eC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEee
Confidence 346778888887 6666654 34 589999998876433221 1 124778899999987665432 23456666
Q ss_pred ccCCCcccceeeccCcccceEEEEEccCCCEE-EEEcCCCcEEEEEcCCce--E------eceeccccccceeEEEEccC
Q 018858 87 VHMPASWRPLESYNYNKEEINQIVCNPKSSFL-ACADDGGDVKIIDIRQHC--L------YKSLRAGHSSICSSVQFIPW 157 (349)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~--~------~~~~~~~~~~~v~~~~~~~~ 157 (349)
+..++.......+ .....++|+++++.+ ++-+..+.|+.|++.... . ...+. +..+....+++..
T Consensus 135 ~~~g~~~~~~~~~----~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~-~~~g~pdG~~vD~- 208 (295)
T d2ghsa1 135 VAKGKVTKLFADI----SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDST-GIKGGMDGSVCDA- 208 (295)
T ss_dssp EETTEEEEEEEEE----SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECT-TSSSEEEEEEECT-
T ss_pred ecCCcEEEEeecc----CCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccC-cccccccceEEcC-
Confidence 6655332222222 345788999999755 555667889999875211 1 11111 2233455566655
Q ss_pred CCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccC
Q 018858 158 KPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIES 213 (349)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 213 (349)
+|++.++.-..+.|..||...
T Consensus 209 -----------------------------------~GnlWva~~~~g~V~~~dp~G 229 (295)
T d2ghsa1 209 -----------------------------------EGHIWNARWGEGAVDRYDTDG 229 (295)
T ss_dssp -----------------------------------TSCEEEEEETTTEEEEECTTC
T ss_pred -----------------------------------CCCEEeeeeCCCceEEecCCC
Confidence 788777666778898998654
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.10 E-value=0.00092 Score=50.68 Aligned_cols=205 Identities=10% Similarity=-0.005 Sum_probs=122.6
Q ss_pred eeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEE-eCCCeEEEEEccC
Q 018858 11 LRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYV-SSGKEVKSFDVHM 89 (349)
Q Consensus 11 l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~ 89 (349)
+..+...+.+++|.+.++.++.+-..++.|+..++........+......+..+++..-++.|..+ ...+.|.+.++..
T Consensus 31 ~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg 110 (263)
T d1npea_ 31 LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG 110 (263)
T ss_dssp EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCC
Confidence 444556688899998744444455667889988887665544444444578899998767777655 4567999999875
Q ss_pred CCcccceeeccCcccceEEEEEccCCCEEEEEcC-CCc--EEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCC
Q 018858 90 PASWRPLESYNYNKEEINQIVCNPKSSFLACADD-GGD--VKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPEN 166 (349)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 166 (349)
... ..+.. .....+..+++.|...++..... .+. |..-++.......... ..-....++++.+
T Consensus 111 ~~~-~~l~~--~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~-~~~~~P~glaiD~---------- 176 (263)
T d1npea_ 111 TQR-RVLFD--TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQ-DNLGLPNGLTFDA---------- 176 (263)
T ss_dssp CSC-EEEEC--SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEEC-TTCSCEEEEEEET----------
T ss_pred ceE-EEEec--ccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeee-ecccccceEEEee----------
Confidence 432 22221 12356789999997766654332 223 4444554332222222 2223456777776
Q ss_pred CCCCccccCCceeEEeecCcccccCCCCcEE-EEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeee
Q 018858 167 NGNAGQCYNPAFVHAIAIPDADMLDKTNKIC-VVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEI 245 (349)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (349)
.++.| .+-...+.|...++.....
T Consensus 177 --------------------------~~~~lYw~d~~~~~I~~~~~~g~~~----------------------------- 201 (263)
T d1npea_ 177 --------------------------FSSQLCWVDAGTHRAECLNPAQPGR----------------------------- 201 (263)
T ss_dssp --------------------------TTTEEEEEETTTTEEEEEETTEEEE-----------------------------
T ss_pred --------------------------cCcEEEEEeCCCCEEEEEECCCCCe-----------------------------
Confidence 34444 4445678888888875210
Q ss_pred eeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCc
Q 018858 246 LDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ 300 (349)
Q Consensus 246 ~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 300 (349)
+. .+.+.. ...+|++. ++.+..+-...+.|...|..+++
T Consensus 202 ---------~~--v~~~~~-~P~~lav~----~~~lYwtd~~~~~I~~~~~~~g~ 240 (263)
T d1npea_ 202 ---------RK--VLEGLQ-YPFAVTSY----GKNLYYTDWKTNSVIAMDLAISK 240 (263)
T ss_dssp ---------EE--EEECCC-SEEEEEEE----TTEEEEEETTTTEEEEEETTTTE
T ss_pred ---------EE--EECCCC-CcEEEEEE----CCEEEEEECCCCEEEEEECCCCc
Confidence 11 112212 23577775 45555666667889888988773
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=98.10 E-value=0.0014 Score=52.70 Aligned_cols=113 Identities=8% Similarity=0.048 Sum_probs=71.2
Q ss_pred EEecCCCceEEEeCCCC-----------cEEEEECCCCcEE--EEe-ecCCCCeEEEEEecCCCEEEEEeCC-CeEEEEE
Q 018858 22 IASRDRPGFVASSGEDG-----------CICWFDLRSKDVQ--LVT-DVGNGPVTSLCFKSGNEDIIYVSSG-KEVKSFD 86 (349)
Q Consensus 22 ~~~~~~~~~l~t~~~dg-----------~i~vwd~~~~~~~--~~~-~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~iwd 86 (349)
+..+.++++++.|+.+. .+.+||..+++.. ... ..+.......++.++++.++.|+.+ ..+.+||
T Consensus 25 a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd 104 (387)
T d1k3ia3 25 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYD 104 (387)
T ss_dssp EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEE
T ss_pred EEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEec
Confidence 33444488888777421 3678999876532 112 2233344566788999988888765 5899999
Q ss_pred ccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCC------CcEEEEEcCCce
Q 018858 87 VHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDG------GDVKIIDIRQHC 136 (349)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~ 136 (349)
..+.. .......... ..-...+..++++.++.|+.+ ..+.+||..+.+
T Consensus 105 ~~~~~-w~~~~~~~~~-r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~ 158 (387)
T d1k3ia3 105 SSSDS-WIPGPDMQVA-RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 158 (387)
T ss_dssp GGGTE-EEECCCCSSC-CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred CccCc-cccccccccc-ccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence 98653 2223322222 222356667789999888753 358899988654
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.98 E-value=0.0017 Score=49.43 Aligned_cols=74 Identities=9% Similarity=0.043 Sum_probs=50.7
Q ss_pred cCCCCeeeeCCceeeeEEEEecCCCceEEEeC----CC--CcEEEEECCCCcEEEEeec------CCCCeEEEEEecCCC
Q 018858 4 AEAKPRRLRGHKATATCCIASRDRPGFVASSG----ED--GCICWFDLRSKDVQLVTDV------GNGPVTSLCFKSGNE 71 (349)
Q Consensus 4 ~~~~~~~l~~h~~~i~~~~~~~~~~~~l~t~~----~d--g~i~vwd~~~~~~~~~~~~------~~~~v~~~~~~~~~~ 71 (349)
.+...+.|..+.+.+...+|||| |+.||-.. .+ ..|.+++..+++....... .........|+|+++
T Consensus 29 ~~g~~~~Lt~~~~~~~~p~~SPD-G~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~ 107 (281)
T d1k32a2 29 KSGSTRKIVSNLGVINNARFFPD-GRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGN 107 (281)
T ss_dssp TTCCEEEEECSSSEEEEEEECTT-SSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCC
T ss_pred CCCCEEEEecCCCcccCEEECCC-CCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCC
Confidence 44567788888888999999999 77776432 22 2477888877765432211 123456788999999
Q ss_pred EEEEEeC
Q 018858 72 DIIYVSS 78 (349)
Q Consensus 72 ~l~~~~~ 78 (349)
.|+....
T Consensus 108 ~l~~~~~ 114 (281)
T d1k32a2 108 LIISTDA 114 (281)
T ss_dssp EEEEECT
T ss_pred EEEEEEc
Confidence 9887643
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.67 E-value=0.0057 Score=46.15 Aligned_cols=241 Identities=10% Similarity=0.148 Sum_probs=137.5
Q ss_pred EEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccC
Q 018858 22 IASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNY 101 (349)
Q Consensus 22 ~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 101 (349)
-.+|. .+.||.-+ ..++.++|+++.+.++.+.- .++|.--.|-. .+.|+..+ +..|+-|+++... .+.+.+..
T Consensus 69 IMhP~-~~IiALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis-~~~L~lVT-~taVYHW~~~g~s--~P~k~fdR 141 (327)
T d1utca2 69 IMNPA-SKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS-LNTVALVT-DNAVYHWSMEGES--QPVKMFDR 141 (327)
T ss_dssp EECSS-SSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEESS-SSEEEEEC-SSEEEEEESSSSC--CCEEEEEC
T ss_pred hcCCC-CcEEEEec-CCeEEEEehhHhhhhceEEc-CCCcEEEEecC-CCEEEEEc-CCceEEEcccCCC--Cchhhhhh
Confidence 45676 67777655 45899999999998888774 45777777764 34566655 5679999996432 23333332
Q ss_pred c----ccceEEEEEccCCCEEEEEc---C----CCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCC
Q 018858 102 N----KEEINQIVCNPKSSFLACAD---D----GGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNA 170 (349)
Q Consensus 102 ~----~~~v~~~~~~~~~~~l~~~~---~----dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 170 (349)
| ...|-....+++.++++..+ . .|.+.+|..+.+ .-+.+. +|......+.+..+
T Consensus 142 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ie-Ghaa~F~~~~~~g~------------- 206 (327)
T d1utca2 142 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIE-GHAASFAQFKMEGN------------- 206 (327)
T ss_dssp CGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEEC-CSEEEEEEECCTTC-------------
T ss_pred cccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCcccc-ceeeeeEEEEcCCC-------------
Confidence 2 23566667788888876432 2 366888887654 334555 66654444433221
Q ss_pred ccccCCceeEEeecCcccccCCCCcEEEEEc---CCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeee
Q 018858 171 GQCYNPAFVHAIAIPDADMLDKTNKICVVAK---GDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILD 247 (349)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (349)
......|+.+. ..+++++.++....... .+
T Consensus 207 --------------------~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~---~~------------------------ 239 (327)
T d1utca2 207 --------------------AEESTLFCFAVRGQAGGKLHIIEVGTPPTGN---QP------------------------ 239 (327)
T ss_dssp --------------------SSCEEEEEEEEEETTEEEEEEEECSCCCTTC---CC------------------------
T ss_pred --------------------CCCceEEEEEECCCCCcEEEEEEcCCCccCC---CC------------------------
Confidence 00122333332 23577777776421000 00
Q ss_pred ecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeeccccccceEEEEee
Q 018858 248 QSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNINLNKKVNWLCTT 327 (349)
Q Consensus 248 ~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 327 (349)
...........-..-..-.-++..+ +.-..+..-+.-|.|++||++++ ..+....--.+.|..-+-.
T Consensus 240 -f~kk~vdi~fppea~~DFPvamqvs---~kygiiyviTK~G~i~lyDleTg---------t~i~~nRIs~~~iF~~a~~ 306 (327)
T d1utca2 240 -FPKKAVDVFFPPEAQNDFPVAMQIS---EKHDVVFLITKYGYIHLYDLETG---------TCIYMNRISGETIFVTAPH 306 (327)
T ss_dssp -CCCEEEECCCCTTCTTCCEEEEEEE---TTTTEEEEEETTSEEEEEETTTC---------CEEEEEECCSSCEEEEEEE
T ss_pred -CcceeEEEECCccccCCcEEEEEee---ccCCEEEEEecCcEEEEEEcccc---------cEEEEeecCCCceEEeccC
Confidence 0000001111111123344578888 77778888889999999999998 4444444444555544433
Q ss_pred cCCCCcEEEeeCCCeEEE
Q 018858 328 PTESENLVVCDTSKVVKV 345 (349)
Q Consensus 328 ~~~~~~l~~~~~dg~i~i 345 (349)
. +..=++....+|.|.-
T Consensus 307 ~-~~~Gi~~VNr~GqVl~ 323 (327)
T d1utca2 307 E-ATAGIIGVNRKGQVLS 323 (327)
T ss_dssp T-TTTEEEEEETTSEEEE
T ss_pred C-CCceEEEECCCCeEEE
Confidence 3 2223666667776653
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.54 E-value=0.005 Score=49.11 Aligned_cols=92 Identities=3% Similarity=0.001 Sum_probs=60.9
Q ss_pred CceEEEe-CCCCcEEEEECCCCcEEEEeec-CCCCeEEEEEe--cCCCEEEEEeCC------------------CeEEEE
Q 018858 28 PGFVASS-GEDGCICWFDLRSKDVQLVTDV-GNGPVTSLCFK--SGNEDIIYVSSG------------------KEVKSF 85 (349)
Q Consensus 28 ~~~l~t~-~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~--~~~~~l~~~~~d------------------g~i~iw 85 (349)
|++|+.. ..++.|.+-|+++.+..+.+.. ....+..++.. |+..|++..+.. +.+.+.
T Consensus 99 GrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~I 178 (459)
T d1fwxa2 99 GRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAV 178 (459)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEE
T ss_pred eeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEE
Confidence 6776655 4678999999999988665443 34566776664 566678777653 235677
Q ss_pred EccCCCcccceeeccCcccceEEEEEccCCCEEEEEcC
Q 018858 86 DVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADD 123 (349)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 123 (349)
|.++.+....+.. ......+.++++|+++++.+.
T Consensus 179 D~~tm~V~~QV~V----~g~ld~~~~s~dGK~af~Tsy 212 (459)
T d1fwxa2 179 DADKWEVAWQVLV----SGNLDNCDADYEGKWAFSTSY 212 (459)
T ss_dssp ETTTTEEEEEEEE----SSCCCCEEECSSSSEEEEEES
T ss_pred ecCCceEEEEeee----CCChhccccCCCCCEEEEEec
Confidence 8776543322222 234667899999999887664
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.51 E-value=0.01 Score=44.78 Aligned_cols=211 Identities=11% Similarity=0.027 Sum_probs=117.3
Q ss_pred eeeeCCceeeeEEEEecCCCceEEEeCCCCcEEEEECCCCc----EEEEeecCCCCeEEEEEecCCCEEEEEe-CCCeEE
Q 018858 9 RRLRGHKATATCCIASRDRPGFVASSGEDGCICWFDLRSKD----VQLVTDVGNGPVTSLCFKSGNEDIIYVS-SGKEVK 83 (349)
Q Consensus 9 ~~l~~h~~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~ 83 (349)
..+......+.+++|.+..+.+..+=..++.|..-++.... ....+......+..+++.+.+..|..+. ..+.|.
T Consensus 23 ~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~ 102 (266)
T d1ijqa1 23 TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVS 102 (266)
T ss_dssp EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEE
T ss_pred eeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEE
Confidence 33433445677899998733344444456667766664321 1222232335567889887676666654 557899
Q ss_pred EEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEc--CCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCC
Q 018858 84 SFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACAD--DGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWE 161 (349)
Q Consensus 84 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 161 (349)
+.++...... .+ ..........++++|...++.... ..+.|...++.......... ..-....++++.+.
T Consensus 103 v~~~~g~~~~-~~--~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~-~~~~~p~gl~iD~~---- 174 (266)
T d1ijqa1 103 VADTKGVKRK-TL--FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT-ENIQWPNGITLDLL---- 174 (266)
T ss_dssp EEETTSSSEE-EE--EECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC-SSCSCEEEEEEETT----
T ss_pred eEecCCceEE-EE--EcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccc-cccceeeEEEeecc----
Confidence 9998754322 21 122235678899998665554432 33457666765433322222 22344567777762
Q ss_pred CCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEE
Q 018858 162 GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA 241 (349)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (349)
.+++..+-...+.|...++.....
T Consensus 175 -------------------------------~~~lYw~d~~~~~I~~~~~dG~~~------------------------- 198 (266)
T d1ijqa1 175 -------------------------------SGRLYWVDSKLHSISSIDVNGGNR------------------------- 198 (266)
T ss_dssp -------------------------------TTEEEEEETTTTEEEEEETTSCSC-------------------------
T ss_pred -------------------------------ccEEEEecCCcCEEEEEECCCCCE-------------------------
Confidence 334444546677888888864210
Q ss_pred EeeeeeecCceeeeeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCc
Q 018858 242 EMEILDQSGGKRLHLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQ 300 (349)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~ 300 (349)
..+............+++. ++.+..+-..++.|+..+..++.
T Consensus 199 -------------~~~~~~~~~~~~p~~lav~----~~~ly~td~~~~~I~~~~~~~g~ 240 (266)
T d1ijqa1 199 -------------KTILEDEKRLAHPFSLAVF----EDKVFWTDIINEAIFSANRLTGS 240 (266)
T ss_dssp -------------EEEEECTTTTSSEEEEEEE----TTEEEEEETTTTEEEEEETTTCC
T ss_pred -------------EEEEeCCCcccccEEEEEE----CCEEEEEECCCCeEEEEECCCCc
Confidence 1111122222345677775 45556665677888888877763
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.19 E-value=0.025 Score=42.59 Aligned_cols=231 Identities=10% Similarity=0.120 Sum_probs=121.1
Q ss_pred CCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCC
Q 018858 37 DGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSS 116 (349)
Q Consensus 37 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 116 (349)
...+.|-|+.++.....-.- ...+.-.+|..+.||.-+ ...++++|+++.+ .++.+.- .+.|..=.|-.+ +
T Consensus 44 ~~~VvIidl~n~~~~~Rrpi---~AdsAIMhP~~~IiALra-g~~LQiFnletK~---klks~~~-~e~VvfWkWis~-~ 114 (327)
T d1utca2 44 QAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKS---KMKAHTM-TDDVTFWKWISL-N 114 (327)
T ss_dssp EEEEEEEETTSTTSCEEEEC---CCSEEEECSSSSEEEEEE-TTEEEEEETTTTE---EEEEEEC-SSCCCEEEESSS-S
T ss_pred CceEEEEECCCCCcceeccc---chhhhhcCCCCcEEEEec-CCeEEEEehhHhh---hhceEEc-CCCcEEEEecCC-C
Confidence 35788888876553221111 112344678888777766 5689999999753 3343332 246666677543 4
Q ss_pred EEEEEcCCCcEEEEEcCCc-eEeceecccc----ccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccC
Q 018858 117 FLACADDGGDVKIIDIRQH-CLYKSLRAGH----SSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLD 191 (349)
Q Consensus 117 ~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (349)
.|+..+. ..|+-|+++.. .+.+.+. .| +..|.....+++..|.. +..++-
T Consensus 115 ~L~lVT~-taVYHW~~~g~s~P~k~fd-R~~~L~~~QIInY~~d~~~kW~~----------------l~GI~~------- 169 (327)
T d1utca2 115 TVALVTD-NAVYHWSMEGESQPVKMFD-RHSSLAGCQIINYRTDAKQKWLL----------------LTGISA------- 169 (327)
T ss_dssp EEEEECS-SEEEEEESSSSCCCEEEEE-CCGGGTTCEEEEEEECTTSCEEE----------------EEEEEE-------
T ss_pred EEEEEcC-CceEEEcccCCCCchhhhh-hcccccCceEEEEEECCCCCEEE----------------EEeEec-------
Confidence 5655554 47999999632 3444444 33 23455556666444431 111110
Q ss_pred CCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeeeeecCceeeeeeeeecCCCcceEEEE
Q 018858 192 KTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEILDQSGGKRLHLDYSVGGHTAAASCVA 271 (349)
Q Consensus 192 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~i~ 271 (349)
..+. -.|.+.+|..+.. .-..+.||.+....+.
T Consensus 170 -~~~~-----i~G~mQLYS~er~-----------------------------------------~sQ~ieGhaa~F~~~~ 202 (327)
T d1utca2 170 -QQNR-----VVGAMQLYSVDRK-----------------------------------------VSQPIEGHAASFAQFK 202 (327)
T ss_dssp -ETTE-----EEEEEEEEETTTT-----------------------------------------EEEEECCSEEEEEEEC
T ss_pred -CCCc-----eeEEEEEEEeccC-----------------------------------------cCccccceeeeeEEEE
Confidence 0111 1267788888763 2233444443333332
Q ss_pred EeeecCCccEEEE---eeCCCeEEEEecCCCcceecccccceeee---ccccccceEEEEeecCCCCcEEEeeCCCeEEE
Q 018858 272 FSMFGERGKYLIS---GGNDKLVKVWDCSRFQGVQTSINNDLLIK---NINLNKKVNWLCTTPTESENLVVCDTSKVVKV 345 (349)
Q Consensus 272 ~~~~~~~~~~l~s---~~~d~~i~vwd~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 345 (349)
+.-.......++- +...+++.|-++.........-..+.... .....+-..++..++..| .++..+.-|.|++
T Consensus 203 ~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kyg-iiyviTK~G~i~l 281 (327)
T d1utca2 203 MEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHL 281 (327)
T ss_dssp CTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTT-EEEEEETTSEEEE
T ss_pred cCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCC-EEEEEecCcEEEE
Confidence 2100000012221 12337899999877432111000111112 222356677888877544 8888899999999
Q ss_pred eeCC
Q 018858 346 YSIS 349 (349)
Q Consensus 346 w~~~ 349 (349)
+|++
T Consensus 282 yDle 285 (327)
T d1utca2 282 YDLE 285 (327)
T ss_dssp EETT
T ss_pred EEcc
Confidence 9974
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.17 E-value=0.037 Score=44.02 Aligned_cols=79 Identities=8% Similarity=0.024 Sum_probs=49.5
Q ss_pred CCeEEEEEecCCCEEEEEeCC-----C------eEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCC-Cc
Q 018858 59 GPVTSLCFKSGNEDIIYVSSG-----K------EVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDG-GD 126 (349)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~~d-----g------~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~ 126 (349)
.++.......+|+.++.|+.+ + .+.+||..+++-.........+.......++.++++.++.|+.+ ..
T Consensus 20 ~~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~ 99 (387)
T d1k3ia3 20 VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKK 99 (387)
T ss_dssp CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTC
T ss_pred cccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcc
Confidence 344444455678888877742 1 37799998765322211112222334456788899999988755 57
Q ss_pred EEEEEcCCceE
Q 018858 127 VKIIDIRQHCL 137 (349)
Q Consensus 127 i~i~d~~~~~~ 137 (349)
+.+||..+..-
T Consensus 100 ~~~yd~~~~~w 110 (387)
T d1k3ia3 100 TSLYDSSSDSW 110 (387)
T ss_dssp EEEEEGGGTEE
T ss_pred eeEecCccCcc
Confidence 99999886644
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.17 E-value=0.053 Score=45.80 Aligned_cols=49 Identities=10% Similarity=0.025 Sum_probs=37.4
Q ss_pred CCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEE
Q 018858 193 TNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA 241 (349)
Q Consensus 193 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (349)
.+.++++|+.||.++-+|.++++.+-....+....-.-+.+..||+..+
T Consensus 474 agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi 522 (571)
T d2ad6a1 474 KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYI 522 (571)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred cCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEE
Confidence 4667788999999999999999888766666555555677777876443
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.17 E-value=0.053 Score=45.79 Aligned_cols=65 Identities=14% Similarity=0.239 Sum_probs=40.6
Q ss_pred ceEEEeCCCCcEEEEECCCCcEEEEeecCC----CCeEEEEEecCCCEEEEEe------CCCeEEEEEccCCCccc
Q 018858 29 GFVASSGEDGCICWFDLRSKDVQLVTDVGN----GPVTSLCFKSGNEDIIYVS------SGKEVKSFDVHMPASWR 94 (349)
Q Consensus 29 ~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~ 94 (349)
..++.++.||.+.-.|.++++.+....... ..++.--.-.+ ..++.+. ..|.|.-+|+++++...
T Consensus 116 ~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~-~~vivg~~~~~~~~~G~v~a~D~~TG~~~W 190 (571)
T d2ad6a1 116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAK-DTVLMGCSGAELGVRGAVNAFDLKTGELKW 190 (571)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEET-TEEEEECBCGGGTCCCEEEEEETTTCCEEE
T ss_pred CeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeC-CeEEEeeccccccccCcEEEEECCCCcEEE
Confidence 356777889999999999999877664321 11111101112 3444444 26789999999887544
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.03 E-value=0.02 Score=48.30 Aligned_cols=48 Identities=2% Similarity=0.025 Sum_probs=36.1
Q ss_pred CCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEE
Q 018858 193 TNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRD 240 (349)
Q Consensus 193 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (349)
.+.+++.|+.||.++-+|.++++.+-....+....-.-+++..+|+..
T Consensus 468 agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqy 515 (560)
T d1kv9a2 468 AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQY 515 (560)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence 467788899999999999999988876665554444456777777643
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=96.94 E-value=0.023 Score=48.12 Aligned_cols=172 Identities=8% Similarity=-0.026 Sum_probs=92.4
Q ss_pred ceEEEeCCCCcEEEEECCCCcEEEEeecCCCCe-----------------------------------EEEEEecCCCEE
Q 018858 29 GFVASSGEDGCICWFDLRSKDVQLVTDVGNGPV-----------------------------------TSLCFKSGNEDI 73 (349)
Q Consensus 29 ~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v-----------------------------------~~~~~~~~~~~l 73 (349)
..++.++.+|.+.++|..+++.+...+...... ..++++|+...+
T Consensus 328 ~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~ 407 (573)
T d1kb0a2 328 KVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLV 407 (573)
T ss_dssp EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEE
T ss_pred eeeeeccccceeEEeccccccccccccccccccccccccccceeeeeeccccccceEEeecccCCccccccccCCCcceE
Confidence 467788899999999999999876544221110 123456666666
Q ss_pred EEEeCCCeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEeceeccccccceeEEE
Q 018858 74 IYVSSGKEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQ 153 (349)
Q Consensus 74 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~ 153 (349)
+....+....++.....+...................+. .+. -.....-|.+.-||+.+++.+.+.+ ...+...-.
T Consensus 408 yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~-p~~~~~~G~l~AiD~~tGk~~W~~~--~~~p~~gg~ 483 (573)
T d1kb0a2 408 YLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFF-NAE-PPKSKPFGRLLAWDPVAQKAAWSVE--HVSPWNGGT 483 (573)
T ss_dssp EEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEE-CSS-CCCSCCEEEEEEEETTTTEEEEEEE--ESSSCCCCE
T ss_pred EeeccccceeeecccccccccCCCCcccccccccccccc-ccC-CCCCCCcccEEEeCCCCCceEeeec--CCCCCCCce
Confidence 555544444444333211111000000000000000000 000 0000112568889999999888776 221111111
Q ss_pred EccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeee
Q 018858 154 FIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQST 233 (349)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 233 (349)
..- .+.++++|+.||.++.||.++++.+-....+....-.-+.+
T Consensus 484 lst------------------------------------agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty 527 (573)
T d1kb0a2 484 LTT------------------------------------AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTY 527 (573)
T ss_dssp EEE------------------------------------TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE
T ss_pred EEE------------------------------------cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEE
Confidence 111 56788889999999999999998877665554444444667
Q ss_pred eccccEE
Q 018858 234 SKVNIRD 240 (349)
Q Consensus 234 ~~~~~~~ 240 (349)
..+|+..
T Consensus 528 ~~~GkQY 534 (573)
T d1kb0a2 528 MVDGRQY 534 (573)
T ss_dssp EETTEEE
T ss_pred EECCEEE
Confidence 7777643
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.81 E-value=0.058 Score=40.45 Aligned_cols=116 Identities=11% Similarity=0.051 Sum_probs=70.2
Q ss_pred cEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEe-CCCeEEEEEccCCCccccee-eccCcccceEEEEEccCCC
Q 018858 39 CICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVS-SGKEVKSFDVHMPASWRPLE-SYNYNKEEINQIVCNPKSS 116 (349)
Q Consensus 39 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~ 116 (349)
.|+-.++++.+....+. ....+.+++|.+..+.|.... ..+.|...++.......... ........+..+++.+.+.
T Consensus 11 ~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~ 89 (266)
T d1ijqa1 11 EVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS 89 (266)
T ss_dssp SEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred eEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccc
Confidence 58888988766544444 455678999999888877664 45677766665321111111 1121224567888887665
Q ss_pred EEE-EEcCCCcEEEEEcCCceEeceeccccccceeEEEEcc
Q 018858 117 FLA-CADDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIP 156 (349)
Q Consensus 117 ~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 156 (349)
.|. +-...+.|.+.++........+. ........++++|
T Consensus 90 ~lY~~d~~~~~I~v~~~~g~~~~~~~~-~~~~~P~~l~vd~ 129 (266)
T d1ijqa1 90 NIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDP 129 (266)
T ss_dssp EEEEEETTTTEEEEEETTSSSEEEEEE-CTTCCEEEEEEET
T ss_pred eEEEEecCCCEEEeEecCCceEEEEEc-CCCCCcceEEEEc
Confidence 554 44566789999988665444444 3445677888887
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=96.71 E-value=0.087 Score=41.07 Aligned_cols=144 Identities=8% Similarity=0.135 Sum_probs=84.4
Q ss_pred CceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEec----CC--CEEEEEeC-C---CeEEEEEccCCC-cccce
Q 018858 28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKS----GN--EDIIYVSS-G---KEVKSFDVHMPA-SWRPL 96 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~----~~--~~l~~~~~-d---g~i~iwd~~~~~-~~~~~ 96 (349)
..+++....++-|++||++ |+.+..+. .+.+..+..-. .+ ..+++++. + .+|.+|.+.... ....+
T Consensus 40 ~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~ 116 (353)
T d1h6la_ 40 NSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSI 116 (353)
T ss_dssp GCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEEC
T ss_pred ccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccc
Confidence 4567776777779999986 77777664 34566655432 22 23555552 2 368888775321 11111
Q ss_pred eec----cCcccceEEEEE--ccC-CC-EEEEEcCCCcEEEEEcC---Cc----eEeceeccccccceeEEEEccCCCCC
Q 018858 97 ESY----NYNKEEINQIVC--NPK-SS-FLACADDGGDVKIIDIR---QH----CLYKSLRAGHSSICSSVQFIPWKPWE 161 (349)
Q Consensus 97 ~~~----~~~~~~v~~~~~--~~~-~~-~l~~~~~dg~i~i~d~~---~~----~~~~~~~~~~~~~v~~~~~~~~~~~~ 161 (349)
... ......+..+++ ++. +. ++++...+|.+..|.+. .+ +.++.+. ....+..+.+.+
T Consensus 117 ~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~--~~~q~EGCVvDd----- 189 (353)
T d1h6la_ 117 TDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK--MNSQTEGMAADD----- 189 (353)
T ss_dssp SCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE--CSSCEEEEEEET-----
T ss_pred cccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC--CCCccceEEEeC-----
Confidence 110 001123566666 554 43 45667778999888764 22 3444555 345677888877
Q ss_pred CCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEcc
Q 018858 162 GLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIE 212 (349)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 212 (349)
....|..+-++..|..+++.
T Consensus 190 -------------------------------e~~~LyisEE~~Giw~~~a~ 209 (353)
T d1h6la_ 190 -------------------------------EYGSLYIAEEDEAIWKFSAE 209 (353)
T ss_dssp -------------------------------TTTEEEEEETTTEEEEEESS
T ss_pred -------------------------------CCCcEEEecCccceEEEEec
Confidence 67788888777766666554
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.68 E-value=0.023 Score=48.21 Aligned_cols=48 Identities=8% Similarity=0.125 Sum_probs=38.1
Q ss_pred CCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEE
Q 018858 193 TNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRD 240 (349)
Q Consensus 193 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (349)
.+.+++.|+.||.++-+|.++++.+-....+....-.-+++..+|+..
T Consensus 496 agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qY 543 (582)
T d1flga_ 496 AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY 543 (582)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred cCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence 567788899999999999999998877766655555567888888643
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=96.67 E-value=0.094 Score=40.87 Aligned_cols=95 Identities=15% Similarity=0.082 Sum_probs=55.3
Q ss_pred CCCeEEEEEccCce----eeeecCCCCCCccceeeeeccccEEEEeee--eeec-------Cce--------eeeeeeee
Q 018858 202 GDGVVDVINIESEL----NISRSKSTTKPLKGSQSTSKVNIRDAEMEI--LDQS-------GGK--------RLHLDYSV 260 (349)
Q Consensus 202 ~dg~i~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-------~~~--------~~~~~~~~ 260 (349)
...+|.+|++.... .......+.......++...++.++++... .... ... ........
T Consensus 122 ~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~ 201 (340)
T d1v04a_ 122 SSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVV 201 (340)
T ss_dssp TCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEE
T ss_pred CCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEE
Confidence 45689999886432 222444455555678888888988886211 0000 000 00111111
Q ss_pred cCCCcceEEEEEeeecCCccEEEEe-eCCCeEEEEecCCC
Q 018858 261 GGHTAAASCVAFSMFGERGKYLISG-GNDKLVKVWDCSRF 299 (349)
Q Consensus 261 ~~h~~~i~~i~~~~~~~~~~~l~s~-~~d~~i~vwd~~~~ 299 (349)
...-...+.|+++ ||+++|+.+ +..+.|++|++...
T Consensus 202 ~~~l~~pNGI~~s---~d~~~lyVa~t~~~~i~~y~~~~~ 238 (340)
T d1v04a_ 202 AEGFDFANGINIS---PDGKYVYIAELLAHKIHVYEKHAN 238 (340)
T ss_dssp EEEESSEEEEEEC---TTSSEEEEEEGGGTEEEEEEECTT
T ss_pred cCCCCccceeEEC---CCCCEEEEEeCCCCeEEEEEeCCC
Confidence 1122456899999 888877555 56789999999764
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=96.55 E-value=0.07 Score=44.92 Aligned_cols=110 Identities=9% Similarity=0.096 Sum_probs=68.5
Q ss_pred ceEEEeCCCCcEEEEECCCCcEEEEeecCCC------------------------Ce------------EEEEEecCCCE
Q 018858 29 GFVASSGEDGCICWFDLRSKDVQLVTDVGNG------------------------PV------------TSLCFKSGNED 72 (349)
Q Consensus 29 ~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~------------------------~v------------~~~~~~~~~~~ 72 (349)
..++.++.+|.+.++|..+++++...+.-.. .+ ...+++|+...
T Consensus 315 ~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~ 394 (560)
T d1kv9a2 315 KVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGL 394 (560)
T ss_dssp EEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTE
T ss_pred eeeeecCccceEEEEecCCCcccccccccccccccccChhhccccccccccccccceeeeeccccccccccccccCCCCe
Confidence 4677889999999999999998754432110 00 13455666665
Q ss_pred EEEEeCC------------------------------------CeEEEEEccCCCcccceeeccCcccceEEEEEccCCC
Q 018858 73 IIYVSSG------------------------------------KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSS 116 (349)
Q Consensus 73 l~~~~~d------------------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 116 (349)
++....+ |.|.-||+.+++.......- .....-.+.-.+.
T Consensus 395 ~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~----~~~~gg~l~Tagg 470 (560)
T d1kv9a2 395 VYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP----THWNGGTLSTAGN 470 (560)
T ss_dssp EEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES----SSCCCCEEEETTT
T ss_pred eecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCC----CCCCCceeEECCC
Confidence 5543321 35666676666433322221 1111111222466
Q ss_pred EEEEEcCCCcEEEEEcCCceEeceec
Q 018858 117 FLACADDGGDVKIIDIRQHCLYKSLR 142 (349)
Q Consensus 117 ~l~~~~~dg~i~i~d~~~~~~~~~~~ 142 (349)
+++.|+.||.++.+|.++|+.+.+++
T Consensus 471 lVF~G~~dg~l~A~Da~tGe~LW~~~ 496 (560)
T d1kv9a2 471 LVFQGTAAGQMHAYSADKGEALWQFE 496 (560)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEEEECCCCcEEEEECCCCcEeEEEE
Confidence 78889999999999999999998887
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.47 E-value=0.1 Score=38.95 Aligned_cols=162 Identities=10% Similarity=0.023 Sum_probs=98.3
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCC-C--eEEEEEccCCCc
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSG-K--EVKSFDVHMPAS 92 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~ 92 (349)
..+.++++..-++++.++-...+.|.+.++........+......+..+++.|...+++..... + .|.--++... .
T Consensus 79 ~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~-~ 157 (263)
T d1npea_ 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-N 157 (263)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-C
T ss_pred ccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCC-C
Confidence 4678888887635555566667899999987655433333334678899999988777655432 2 3444455422 1
Q ss_pred ccceeeccCcccceEEEEEccCCCEEEEE-cCCCcEEEEEcCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCc
Q 018858 93 WRPLESYNYNKEEINQIVCNPKSSFLACA-DDGGDVKIIDIRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAG 171 (349)
Q Consensus 93 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 171 (349)
...+. ...-.....+++.+.++.|... ...+.|...|+........+. +.. ...++++.
T Consensus 158 ~~~i~--~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~-~~~-~P~~lav~---------------- 217 (263)
T d1npea_ 158 RRILA--QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE-GLQ-YPFAVTSY---------------- 217 (263)
T ss_dssp CEEEE--CTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE-CCC-SEEEEEEE----------------
T ss_pred ceeee--eecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEEC-CCC-CcEEEEEE----------------
Confidence 22221 1122456889998877666444 567789989987554433333 222 23456653
Q ss_pred cccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeee
Q 018858 172 QCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISR 219 (349)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 219 (349)
++.++.+-...+.|...|..+++....
T Consensus 218 ---------------------~~~lYwtd~~~~~I~~~~~~~g~~~~~ 244 (263)
T d1npea_ 218 ---------------------GKNLYYTDWKTNSVIAMDLAISKEMDT 244 (263)
T ss_dssp ---------------------TTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred ---------------------CCEEEEEECCCCEEEEEECCCCccceE
Confidence 244455555678888888887655443
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.40 E-value=0.17 Score=40.80 Aligned_cols=105 Identities=7% Similarity=0.052 Sum_probs=63.6
Q ss_pred CCceeeeEEEEecCCCceEE-E----eCCCCcEEEEECCCCcEEE-EeecCCCCeEEEEEecCCCEEEEEeCC-------
Q 018858 13 GHKATATCCIASRDRPGFVA-S----SGEDGCICWFDLRSKDVQL-VTDVGNGPVTSLCFKSGNEDIIYVSSG------- 79 (349)
Q Consensus 13 ~h~~~i~~~~~~~~~~~~l~-t----~~~dg~i~vwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d------- 79 (349)
++.-.+..++++|+ +++++ + |+....|+++|+.+++.+. .+.. .....++|.++++.|+....+
T Consensus 122 ~~~~~~~~~~~Spd-~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~ 198 (430)
T d1qfma1 122 DGTVALRGYAFSED-GEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSD 198 (430)
T ss_dssp SSCEEEEEEEECTT-SSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCS
T ss_pred cccceecceEecCC-CCEEEEEeccccCchheeEEeccCcceeccccccc--ccccceEEcCCCCEEEEEEeccccCccc
Confidence 34444566788998 67766 2 2233579999999998753 2321 112457899999988765432
Q ss_pred ---------CeEEEEEccCCCcccceeeccCc--ccceEEEEEccCCCEEEEE
Q 018858 80 ---------KEVKSFDVHMPASWRPLESYNYN--KEEINQIVCNPKSSFLACA 121 (349)
Q Consensus 80 ---------g~i~iwd~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~ 121 (349)
..|..+.+.+.... ....+... ...+..+..++++++++..
T Consensus 199 ~~~~~~~~~~~v~~h~lgt~~~~-d~~v~~e~d~~~~~~~~~~s~d~~~l~i~ 250 (430)
T d1qfma1 199 GTETSTNLHQKLYYHVLGTDQSE-DILCAEFPDEPKWMGGAELSDDGRYVLLS 250 (430)
T ss_dssp SSCCCCCCCCEEEEEETTSCGGG-CEEEECCTTCTTCEEEEEECTTSCEEEEE
T ss_pred ccccccCCcceEEEEECCCCccc-cccccccccCCceEEeeeccCCcceeeEE
Confidence 25777887765322 11222222 2345567778888887643
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=95.85 E-value=0.43 Score=40.29 Aligned_cols=65 Identities=12% Similarity=0.160 Sum_probs=42.8
Q ss_pred ceEEEeCCCCcEEEEECCCCcEEEEeecCC----CCeEE-EEEecCCCEEEEEeC------CCeEEEEEccCCCcccc
Q 018858 29 GFVASSGEDGCICWFDLRSKDVQLVTDVGN----GPVTS-LCFKSGNEDIIYVSS------GKEVKSFDVHMPASWRP 95 (349)
Q Consensus 29 ~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~----~~v~~-~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~ 95 (349)
.+++.++.|+.|.-.|.++++++..+.... ..++. -.+ .+..++.+.. .|.|.-+|.++++..-.
T Consensus 122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v--~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~ 197 (596)
T d1w6sa_ 122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV--VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWR 197 (596)
T ss_dssp CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE--ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred eEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcE--ECCeEEEeeccccccccCceEEEECCCCcEEEE
Confidence 368888889999999999999988775321 11111 011 1344555542 48899999999876543
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=95.40 E-value=0.42 Score=37.11 Aligned_cols=86 Identities=9% Similarity=0.065 Sum_probs=49.8
Q ss_pred eeeeeecCCCcceEEEEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccceeeecc--ccccceEEEEeecC-CC
Q 018858 255 HLDYSVGGHTAAASCVAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDLLIKNI--NLNKKVNWLCTTPT-ES 331 (349)
Q Consensus 255 ~~~~~~~~h~~~i~~i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~-~~ 331 (349)
..++.+.. ...+..+.++ +....|..+-++.-|+.++........ ..++.... .....+..++.... ++
T Consensus 171 ~lvr~f~~-~~q~EGCVvD---de~~~LyisEE~~Giw~~~a~~~~~~~----~~~i~~~~g~~l~~D~EGlaiy~~~~~ 242 (353)
T d1h6la_ 171 KKVRAFKM-NSQTEGMAAD---DEYGSLYIAEEDEAIWKFSAEPDGGSN----GTVIDRADGRHLTPDIEGLTIYYAADG 242 (353)
T ss_dssp EEEEEEEC-SSCEEEEEEE---TTTTEEEEEETTTEEEEEESSTTSCSC----CEEEEECSSSSCCSCEEEEEEEECGGG
T ss_pred EeeeccCC-CCccceEEEe---CCCCcEEEecCccceEEEEeccCCCcc----ceeeecccCccccCCccccEEEEcCCC
Confidence 34444432 3467889998 778888888888777777654321100 02222221 24567777776532 22
Q ss_pred -CcEEEe-eCCCeEEEeeC
Q 018858 332 -ENLVVC-DTSKVVKVYSI 348 (349)
Q Consensus 332 -~~l~~~-~~dg~i~iw~~ 348 (349)
.+|++. -.+++..|||.
T Consensus 243 ~GylivSsQG~n~f~vydr 261 (353)
T d1h6la_ 243 KGYLLASSQGNSSYAIYER 261 (353)
T ss_dssp CEEEEEEEGGGTEEEEEES
T ss_pred CeEEEEEcCCCCeEEEEec
Confidence 255444 47788999975
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.86 E-value=0.65 Score=36.42 Aligned_cols=112 Identities=4% Similarity=0.118 Sum_probs=64.2
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEEccCC-------CcccceeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEE
Q 018858 59 GPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMP-------ASWRPLESYNYNKEEINQIVCNPKSSFLACADDGGDVKIID 131 (349)
Q Consensus 59 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d 131 (349)
....-+++++...++++|+.++ +.|...+.- .....+. ....-..|..++|+.+ .++.. .++.+..++
T Consensus 37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~-~~~~ip~v~~vafs~d--~l~v~-~~~~l~~~~ 111 (381)
T d1xipa_ 37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFK-WEKEIPDVIFVCFHGD--QVLVS-TRNALYSLD 111 (381)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCS-EEEECTTEEEEEEETT--EEEEE-ESSEEEEEE
T ss_pred cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcce-eccCCCCeEEEEeeCC--EEEEE-eCCCEEEEE
Confidence 3456688888778888888775 667764320 0000010 0001135788898754 45554 345678887
Q ss_pred cCCceEeceeccccccceeEEEEccCCCCCCCCCCCCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEc
Q 018858 132 IRQHCLYKSLRAGHSSICSSVQFIPWKPWEGLPENNGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINI 211 (349)
Q Consensus 132 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 211 (349)
...-....... ....++..+.++| ..++....+|.+.++++
T Consensus 112 ~~~l~~~~~~~-~~~~~~~~~~~~p--------------------------------------~~~~l~~~~~~~~~~~l 152 (381)
T d1xipa_ 112 LEELSEFRTVT-SFEKPVFQLKNVN--------------------------------------NTLVILNSVNDLSALDL 152 (381)
T ss_dssp SSSTTCEEEEE-ECSSCEEEEEECS--------------------------------------SEEEEEETTSEEEEEET
T ss_pred eeccccccccc-cccccccceecCC--------------------------------------ceeEEEecCCCEEEEEe
Confidence 76533322222 2334566666665 34556667888889988
Q ss_pred cCc
Q 018858 212 ESE 214 (349)
Q Consensus 212 ~~~ 214 (349)
...
T Consensus 153 ~~~ 155 (381)
T d1xipa_ 153 RTK 155 (381)
T ss_dssp TTC
T ss_pred ccC
Confidence 864
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=94.56 E-value=1.1 Score=37.67 Aligned_cols=49 Identities=6% Similarity=0.028 Sum_probs=38.4
Q ss_pred CCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEE
Q 018858 193 TNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDA 241 (349)
Q Consensus 193 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (349)
.+.+++.|+.||.++-+|.++++.+-.........-.-+.+..+|+..+
T Consensus 483 agglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYv 531 (596)
T d1w6sa_ 483 AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYV 531 (596)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred cCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEEE
Confidence 5677888999999999999999988777666555556677777886433
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.52 E-value=0.8 Score=35.90 Aligned_cols=100 Identities=11% Similarity=0.020 Sum_probs=64.6
Q ss_pred eeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccce
Q 018858 17 TATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRPL 96 (349)
Q Consensus 17 ~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 96 (349)
.|..++|+.+ .|+.. .++.+..++............-..++..+.++|. .++....++.+.++++..++.....
T Consensus 88 ~v~~vafs~d---~l~v~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~ 161 (381)
T d1xipa_ 88 DVIFVCFHGD---QVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLA 161 (381)
T ss_dssp TEEEEEEETT---EEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CeEEEEeeCC---EEEEE-eCCCEEEEEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCcccccc
Confidence 4788899754 34443 3456888887765544444445567778877764 6777778899999999876433222
Q ss_pred eec--cCcccceEEEEEccCCCEEEEEc
Q 018858 97 ESY--NYNKEEINQIVCNPKSSFLACAD 122 (349)
Q Consensus 97 ~~~--~~~~~~v~~~~~~~~~~~l~~~~ 122 (349)
... ..-...+.+++|++.+.+++++.
T Consensus 162 ~~v~~~~~~~~~~~v~ws~kgkq~v~~~ 189 (381)
T d1xipa_ 162 QNVTSFDVTNSQLAVLLKDRSFQSFAWR 189 (381)
T ss_dssp ESEEEEEECSSEEEEEETTSCEEEEEEE
T ss_pred CCcceEEecCCceEEEEeCCcEEEEEeC
Confidence 110 01135678888888888777764
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=93.89 E-value=1.5 Score=36.63 Aligned_cols=67 Identities=9% Similarity=-0.035 Sum_probs=39.9
Q ss_pred eEEEeCCCCcEEEEECCCCcEEEEeecCC--CCeEEEEEec--CCCEEEEEeC------CCeEEEEEccCCCcccce
Q 018858 30 FVASSGEDGCICWFDLRSKDVQLVTDVGN--GPVTSLCFKS--GNEDIIYVSS------GKEVKSFDVHMPASWRPL 96 (349)
Q Consensus 30 ~l~t~~~dg~i~vwd~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~l~~~~~------dg~i~iwd~~~~~~~~~~ 96 (349)
.++.+..|+.+.-.|.++++.+....... ..-..+.-.| -+..+++++. .|.|.-+|.++++..-..
T Consensus 130 ~v~~~t~~g~l~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~ 206 (573)
T d1kb0a2 130 KVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW 206 (573)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred cEEEEecccceeeeccccccceecccCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccceeee
Confidence 46667778999999999999887665321 1100111111 1334555432 368999999988755443
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.35 E-value=1.1 Score=33.27 Aligned_cols=51 Identities=6% Similarity=0.036 Sum_probs=26.3
Q ss_pred CcEEEEECCCCcEEEE--eecCCCCeEEEEEecCCCEEEEEeC---------CCeEEEEEccCC
Q 018858 38 GCICWFDLRSKDVQLV--TDVGNGPVTSLCFKSGNEDIIYVSS---------GKEVKSFDVHMP 90 (349)
Q Consensus 38 g~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~ 90 (349)
..+.+||+.+++-... +......- +++.. +++.++.|+. -..+.+||..+.
T Consensus 19 ~~~~~yd~~t~~W~~~~~~p~~R~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~ 80 (288)
T d1zgka1 19 SYLEAYNPSNGTWLRLADLQVPRSGL-AGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 80 (288)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred ceEEEEECCCCeEEECCCCCCcccee-EEEEE-CCEEEEEeCcccCCCCccccchhhhcccccc
Confidence 3578999988764322 22222122 22222 4555555552 135778887754
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.92 E-value=2.2 Score=35.66 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=21.8
Q ss_pred CccEEEEeeCCCeEEEEecCCCccee
Q 018858 278 RGKYLISGGNDKLVKVWDCSRFQGVQ 303 (349)
Q Consensus 278 ~~~~l~s~~~d~~i~vwd~~~~~~~~ 303 (349)
.+.++++|+.||.++.+|.++++.+.
T Consensus 496 agglVF~Gt~dg~l~A~Da~TGe~LW 521 (582)
T d1flga_ 496 AGNLVFTGTGDGYFKAFDAKSGKELW 521 (582)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred cCCeEEEeCCCCeEEEEECCCCcEeE
Confidence 56677789999999999999996543
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=87.90 E-value=3.2 Score=29.22 Aligned_cols=103 Identities=11% Similarity=0.093 Sum_probs=52.7
Q ss_pred CceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCC--CEEEEEe------CCCeEEEEEccCCCcccceeec
Q 018858 28 PGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGN--EDIIYVS------SGKEVKSFDVHMPASWRPLESY 99 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~ 99 (349)
.++++++...|.+.++-+..++.+.. ...+|.... .|.. .++..+- +-..|.+-++.....-.. +
T Consensus 26 d~ll~~~~seG~vni~~l~g~~~vkL---tkePI~~~~-~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~---i 98 (313)
T d2hu7a1 26 DKLLVVGFSEGSVNAYLYDGGETVKL---NREPINSVL-DPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQR---L 98 (313)
T ss_dssp TEEEEEEEETTEEEEEEESSSSCEEC---CSSCCSEEC-EECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEE---C
T ss_pred CcEEEEEeccceEEEEEEeCCEEEEE---ecccccCcC-CCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeE---e
Confidence 56888887889999998887775432 233443221 1211 1222111 112344444442111111 1
Q ss_pred cCcc-cceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEe
Q 018858 100 NYNK-EEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLY 138 (349)
Q Consensus 100 ~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 138 (349)
.... -.|.+++.. +.+..++|+......+|-++.|+..
T Consensus 99 ~spk~vRI~S~~yd-dk~vvF~Gased~~~LYviegGklr 137 (313)
T d2hu7a1 99 EAVKPMRILSGVDT-GEAVVFTGATEDRVALYALDGGGLR 137 (313)
T ss_dssp TTSCSBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEE
T ss_pred cCCceEEEEEeeec-CceEEEecccCCceEEEEEeCCcee
Confidence 1111 234445443 3355667777777888888877653
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=86.47 E-value=5.5 Score=30.41 Aligned_cols=102 Identities=19% Similarity=0.129 Sum_probs=56.8
Q ss_pred eeEEEEecCCCceEEEeCC------------CCcEEEEECCCCcE-EEEeecC-------CCCeEEEEE--ecCCC-EEE
Q 018858 18 ATCCIASRDRPGFVASSGE------------DGCICWFDLRSKDV-QLVTDVG-------NGPVTSLCF--KSGNE-DII 74 (349)
Q Consensus 18 i~~~~~~~~~~~~l~t~~~------------dg~i~vwd~~~~~~-~~~~~~~-------~~~v~~~~~--~~~~~-~l~ 74 (349)
--.+...|+ +..+++++. .|.|.++|+.+.+. ...+... .-....+.+ .+++. +|+
T Consensus 37 ~EDi~~~~d-g~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~ 115 (340)
T d1v04a_ 37 SEDLEILPN-GLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 115 (340)
T ss_dssp CCEEEECTT-SEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEE
T ss_pred cceEEECCC-CcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEE
Confidence 345777887 666666542 48999999876543 2222211 123355554 34555 355
Q ss_pred EEe---CCCeEEEEEccCCCc-ccceeeccC-cccceEEEEEccCCCEEEE
Q 018858 75 YVS---SGKEVKSFDVHMPAS-WRPLESYNY-NKEEINQIVCNPKSSFLAC 120 (349)
Q Consensus 75 ~~~---~dg~i~iwd~~~~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~l~~ 120 (349)
+.. ...+|.+|++..... ..-...... .......+++..++.++++
T Consensus 116 vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~T 166 (340)
T d1v04a_ 116 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYAT 166 (340)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEE
T ss_pred EEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEe
Confidence 553 346788888864321 222222221 1234678888888887777
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=86.38 E-value=4.7 Score=29.52 Aligned_cols=105 Identities=9% Similarity=-0.029 Sum_probs=47.8
Q ss_pred eeeeEEEEecCCCceEEEeCCCCcEEEEECCCCcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEccCCCcccc
Q 018858 16 ATATCCIASRDRPGFVASSGEDGCICWFDLRSKDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDVHMPASWRP 95 (349)
Q Consensus 16 ~~i~~~~~~~~~~~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 95 (349)
..|..++.-. ...+.-. ||.|..|-......+-.-......+..++-- ..+.+. -.|+.+..|..........
T Consensus 26 ~~i~~va~G~---~h~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G--~~~~~a-l~dg~v~~wG~~~~gq~~~ 98 (273)
T d1jtdb_ 26 SGVDAIAGGY---FHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAG--NYHSLA-LKDGEVIAWGGNEDGQTTV 98 (273)
T ss_dssp SSEEEEEECS---SEEEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEEC--SSEEEE-EETTEEEEEECCTTSTTCC
T ss_pred CCcEEEEccC---CEEEEEE-CCEEEEEeCCCCCceeeeecccccceEEecC--CCceee-eeeeeeeccCCCcceeecc
Confidence 4577766532 2333334 7899999765432211111122344444432 222222 2488999997643211111
Q ss_pred eeeccCcccceEEEEEccCCCEEEEEcCCCcEEEEEcC
Q 018858 96 LESYNYNKEEINQIVCNPKSSFLACADDGGDVKIIDIR 133 (349)
Q Consensus 96 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 133 (349)
.... ...+..++.... ..++ -.|+.+..|.-.
T Consensus 99 ~~~~---~~~~~~i~~~~~-~~~~--~~dg~v~~~g~~ 130 (273)
T d1jtdb_ 99 PAEA---RSGVDAIAAGAW-ASYA--LKDGKVIAWGDD 130 (273)
T ss_dssp CGGG---GSSCCEEEEETT-EEEE--EETTEEEEEECC
T ss_pred cccc---ccceeEEeeecc-cccc--cccccceecccC
Confidence 1111 123444444322 1222 247888888643
|
| >d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: GyrA/ParC C-terminal domain-like family: GyrA/ParC C-terminal domain-like domain: Topoisomerase IV subunit A, ParC, C-terminal domain species: Bacillus stearothermophilus [TaxId: 1422]
Probab=85.98 E-value=5.7 Score=30.08 Aligned_cols=244 Identities=8% Similarity=0.077 Sum_probs=120.0
Q ss_pred CceEEEeCCCCcEEEEECCC----CcEEEEeecCCCCeEEEEEecCCCEEEEEeCCCeEEEEEc---cCCC---ccccee
Q 018858 28 PGFVASSGEDGCICWFDLRS----KDVQLVTDVGNGPVTSLCFKSGNEDIIYVSSGKEVKSFDV---HMPA---SWRPLE 97 (349)
Q Consensus 28 ~~~l~t~~~dg~i~vwd~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~---~~~~---~~~~~~ 97 (349)
...+++-+.+|.|+--++.+ +..-..++ ....+..+......+.|+.-+..|.++.-.+ ..+. ...++.
T Consensus 5 E~v~v~lS~~GyiKR~~~~~~~~~~~~~~~~k-~~D~v~~~~~~~t~d~ll~fT~~Grvy~l~v~eiP~~~~~s~G~pi~ 83 (323)
T d1wp5a_ 5 EDVIVTVTKDGYVKRTSLRSYAASNGQDFAMK-DTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIA 83 (323)
T ss_dssp CEEEEEEETTCEEEEEEHHHHHHTTTCCCCCC-TTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGG
T ss_pred CCEEEEEeCCCeEEEeeHHHhhhcCCCCCccc-CCceEEEEEEEcCCCEEEEEecCCEEEEEeeccCcccccccccccce
Confidence 56677777888877544321 00001122 1234555544455566666677886665543 3211 112222
Q ss_pred e---ccCcccceEEEEEcc--CCCEEEEEcCCCcEEEEEcCCce------EeceeccccccceeEEEEccCCCCCCCCCC
Q 018858 98 S---YNYNKEEINQIVCNP--KSSFLACADDGGDVKIIDIRQHC------LYKSLRAGHSSICSSVQFIPWKPWEGLPEN 166 (349)
Q Consensus 98 ~---~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 166 (349)
. +......+..+...+ ...+|+..+..|.++..++.... -...++......+..+....
T Consensus 84 ~ll~l~~~e~ii~~~~~~~~~~~~~l~~~Tk~G~iKr~~l~~f~~~~~~~g~~~i~L~~~D~l~~v~~~~---------- 153 (323)
T d1wp5a_ 84 NIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTD---------- 153 (323)
T ss_dssp GTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEEC----------
T ss_pred eeecccCCcceEEEeeccccccceeEEEEeehhheeeccHHHhhhhhccchhhhccccccccccceeccC----------
Confidence 1 222222333444433 35788888999999999875321 11112212344455555544
Q ss_pred CCCCccccCCceeEEeecCcccccCCCCcEEEEEcCCCeEEEEEccCceeeeecCCCCCCccceeeeeccccEEEEeeee
Q 018858 167 NGNAGQCYNPAFVHAIAIPDADMLDKTNKICVVAKGDGVVDVINIESELNISRSKSTTKPLKGSQSTSKVNIRDAEMEIL 246 (349)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (349)
....++.++..|.+..|+...-.......
T Consensus 154 --------------------------~~~~i~l~t~~G~~lrf~~~~vr~~gr~a------------------------- 182 (323)
T d1wp5a_ 154 --------------------------GMNELFLVTHNGYALWFDESEVSIVGVRA------------------------- 182 (323)
T ss_dssp --------------------------SCSEEEEEETTSEEEEEEGGGSCBCCSSC-------------------------
T ss_pred --------------------------CCeEEEEEEecceeeEeecccccccCccc-------------------------
Confidence 45678888899999999877521100000
Q ss_pred eecCceeeeeeeeecCCCcceEE-EEEeeecCCccEEEEeeCCCeEEEEecCCCcceecccccce-eeeccccccceEEE
Q 018858 247 DQSGGKRLHLDYSVGGHTAAASC-VAFSMFGERGKYLISGGNDKLVKVWDCSRFQGVQTSINNDL-LIKNINLNKKVNWL 324 (349)
Q Consensus 247 ~~~~~~~~~~~~~~~~h~~~i~~-i~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~ 324 (349)
..-....+... ..+.. ..+. +++..|+..+..|..+.-.+...........+.. +.....-...+..+
T Consensus 183 ------~GV~~ikL~~~-D~vv~~~~~~---~~~~~ll~~T~~G~gKr~~~~e~~~~~RggkGv~~~k~~k~~~~~v~~~ 252 (323)
T d1wp5a_ 183 ------AGVKGMNLKEG-DYIVSGQLIT---SKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGF 252 (323)
T ss_dssp ------CCEECCCCCTT-CCEEEEEEEC---CTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEE
T ss_pred ------ccccccccccc-cccchhhhcc---ccccceeeeeeeheeecccchhhccccccccccccccccccccceeeee
Confidence 00111122222 23333 3343 5667888888899888876654322111111111 11111122345444
Q ss_pred EeecCCCCcEEEeeCCCeEE
Q 018858 325 CTTPTESENLVVCDTSKVVK 344 (349)
Q Consensus 325 ~~~~~~~~~l~~~~~dg~i~ 344 (349)
.... +...|+..+..|.+.
T Consensus 253 ~~~~-~~d~l~l~T~~g~~~ 271 (323)
T d1wp5a_ 253 VVAQ-DSDTIYLQTEKSFIE 271 (323)
T ss_dssp EEEC-TTCEEEEEETTSCEE
T ss_pred EecC-CCCEEEEEeCCCEEE
Confidence 4433 334566666666654
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=85.66 E-value=7.1 Score=30.87 Aligned_cols=58 Identities=9% Similarity=0.110 Sum_probs=37.6
Q ss_pred CeEEEEEecCCCEEEEEe-CC----CeEEEEEccCCCcccceeeccCcccceEEEEEccCCCEEEEE
Q 018858 60 PVTSLCFKSGNEDIIYVS-SG----KEVKSFDVHMPASWRPLESYNYNKEEINQIVCNPKSSFLACA 121 (349)
Q Consensus 60 ~v~~~~~~~~~~~l~~~~-~d----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 121 (349)
.+...+++|++++++.+- .+ -.|+++|+.+++... ..+. ......++|.++++.|+-.
T Consensus 126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~--~~i~--~~~~~~~~W~~D~~~~~Y~ 188 (430)
T d1qfma1 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELP--DVLE--RVKFSCMAWTHDGKGMFYN 188 (430)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEE--EEEE--EECSCCEEECTTSSEEEEE
T ss_pred eecceEecCCCCEEEEEeccccCchheeEEeccCcceecc--cccc--cccccceEEcCCCCEEEEE
Confidence 345667899999988643 22 379999999875432 1121 1123568899999877643
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=84.37 E-value=8.5 Score=30.69 Aligned_cols=54 Identities=9% Similarity=0.131 Sum_probs=37.0
Q ss_pred cceEEEEEccCCCEEEEEcCCCcEEEEEcCCceEec--eec-----cccccceeEEEEccC
Q 018858 104 EEINQIVCNPKSSFLACADDGGDVKIIDIRQHCLYK--SLR-----AGHSSICSSVQFIPW 157 (349)
Q Consensus 104 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~-----~~~~~~v~~~~~~~~ 157 (349)
...++|+|.|+++.|++--..|.|++++..+++... .+. .........|+|+|+
T Consensus 27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 567899999999988876557999999877664322 111 012345677888873
|