Citrus Sinensis ID: 018866

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35
Protein Sequence
MISVIALWIWRICAASILRLDSQKDGDSKRGKEAESAAGVETVSKKKKKRSNEDVHTIVVQSEDSGELANSKETEKEKSKQNNKRKKKVKLDSESLVNDVEVLGTEGKHGTKAKESESARDFLATETTATNGNIASVEDESVKDKGKKKQKDGSVSKSSFDVDSKEIGEQKSGRTESKNDRNKTSEEDTTDKERKGSKKRKRLASEEKDSEPNDKMEVEESKRRKTEGSEELKINDDQVNGTDKNEEKSAPNKTRKKQANGSAEPKSVKAFQRVKVDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHSVKFNYSDEE
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHcccccccccccccccHHHccccccHHHHHHHccccccccHHccccccHHHccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccEEccccEEEccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHcccccccHcccccccccccccccccccHccccHHHcccccccccccEccccccccHHHHcccccccHHHccccHHHHccccccccccccEEcccccccccccccccccccccccccccccHHHHHHccccccHccccccccccccccccccHHHHHcccccccccccccccccHHccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccHccEEEEcHHHccccHHccccccccHHHHHHHHHHHHccccccccccccccccccccEEEEEEcEEEEcccccc
Coil and Loop (DISEMBL)
MISVIALWIWRICAASILrldsqkdgdskrgkeaesaagvetvskkkkkrsnedVHTIVVqsedsgelansketEKEKSKqnnkrkkkvkldsesLVNDVEvlgtegkhgtkakeseSARDFLATEttatngniasvedesvkdkgkkkqkdgsvskssfdvdskeigeqksgrteskndrnktseedttdkerkgskkrkrlaseekdsepndkmeveeskrrktegseelkinddqvngtdkneeksapnktrkkqangsaepksvKAFQrvkvdeveftderlkdnsywakdgaeigygAKAQEVLgqvrgrdfrhektkkkrgsyrggqidlqshsvkfnysdee
Flexible Loop (DISEMBL)
MISVIALWIWRICAASILrldsqkdgdskrgkeaesaagvetvskkkkkrsnedvhtivvqsedsgelansketekekskqnnkrkkkvkldseslvndvevlgtegkhgtkakesesarDFLAtettatngniasvedesvkdkgkkkqkdgsvskssfdvdskeigeqksgrteskndrnktseedttdkerkgskkrkrlaseekdsepndkmeveeskrrktegseelkinddqvngtdkneeksapnktrkkqangsaepksvkafqrvkvdeveftderlkdnsywakdGAEIGYGAKAqevlgqvrgrdfrhektkkkrgsyrggqidlqshsvkfnysdee
Low Complexity Region (SEG)
MISVIALWIWRICAASILRLDSQKDGDSKRGKEAESAAGVETVSKKKKKRSNEDVHTIVVQSEDSGELANSKETEkekskqnnkrkkkvkLDSESLVNDVEVLGTEGKHGTKAKESESARDFLATETTATNGNIASVEDEsvkdkgkkkqkdgsvskssfdvdskEIGEQKSGRTESKNDRNKTSEEDTTDKERKGSKKRKRLASEEKDSEPNDKMEVEESKRRKTEGSEELKINDDQVNGTDKNEEKSAPNKTRKKQANGSAEPKSVKAFQRVKVDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHSVKFNYSDEE
Disordered region (IsUnstruct)
**SVIALWIWRICAASILRL***************************************************************************************************************************************************************************************************************************************************************VDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQ**************************************
Disordered Region (DISOPRED)
*ISVIALWIWRICAASI********************************************************************************************************************************************************************************************************************************************************************EVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFR***T*******RG*QIDLQSHS**F******
Disordered Region (DISEMBL)
MISVIALWIWRICAASILRLDS********************************VHTIVVQS******************************SESLVNDVEVLGT*************ARDFLATETTATNGNIASVE********************************************************************************************ELKINDDQV*****************************KAFQRVKVDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDF************RGGQIDLQSHSVKFNYSDEE
Disordered Region (DISPRO)
MISVIALWIWRICAASIL**********************************************************************************************************************************************************************************************************************************************************KAFQRVKVDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFRHE***KKRGSYRGGQIDLQSHSVKFNY****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MISVIALWIWRICAASILRLDSQKDGDSKRGKEAESAAGVETVSKKKKKRSNEDVHTIVVQSEDSGELANSKETEKEKSKQNNKRKKKVKLDSESLVNDVEVLGTEGKHGTKAKESESARDFLATETTATNGNIASVEDESVKDKGKKKQKDGSVSKSSFDVDSKEIGEQKSGRTESKNDRNKTSEEDTTDKERKGSKKRKRLASEEKDSEPNDKMEVEESKRRKTEGSEELKINDDQVNGTDKNEEKSAPNKTRKKQANGSAEPKSVKAFQRVKVDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHSVKFNYSDEE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	349	2.2.26 [Sep-21-2011]
P41777	704	Nucleolar and coiled-body	yes	no	0.209	0.103	0.554	5e-16
Q14978	699	Nucleolar and coiled-body	yes	no	0.209	0.104	0.540	9e-16
P32583	406	Suppressor protein SRP40	yes	no	0.206	0.177	0.506	3e-11
Q9P785	451	LisH domain-containing pr	yes	no	0.200	0.155	0.44	1e-06

>sp|P41777|NOLC1_RAT Nucleolar and coiled-body phosphoprotein 1 OS=Rattus norvegicus GN=Nolc1 PE=1 SV=1

 Score = 85.9 bits (211), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 41/74 (55%), Positives = 55/74 (74%), Gaps = 1/74 (1%)

Query: 271 FQRVKVDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYR 330
           F+RV+ +E+E  D R+ DNS+ AK GA   +G +A +VL   +G+ FRHEKTKKKRGSYR
Sbjct: 630 FRRVREEEIEV-DSRVADNSFDAKRGAAGDWGERANQVLKFTKGKSFRHEKTKKKRGSYR 688

Query: 331 GGQIDLQSHSVKFN 344
           GG I +Q +SVKF+
Sbjct: 689 GGSISVQVNSVKFD 702

Related to nucleologenesis, may play a role in the maintenance of the fundamental structure of the fibrillar center and dense fibrillar component in the nucleolus. It has intrinsic GTPase and ATPase activities. May play an important role in transcription catalyzed by RNA polymerase I.
Rattus norvegicus (taxid: 10116)

>sp|Q14978|NOLC1_HUMAN Nucleolar and coiled-body phosphoprotein 1 OS=Homo sapiens GN=NOLC1 PE=1 SV=2

 Score = 84.7 bits (208), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 40/74 (54%), Positives = 55/74 (74%), Gaps = 1/74 (1%)

Query: 271 FQRVKVDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYR 330
           F+RV+ +E+E  D R+ DNS+ AK GA   +G +A +VL   +G+ FRHEKTKKKRGSYR
Sbjct: 625 FRRVREEEIEV-DSRVADNSFDAKRGAAGDWGERANQVLKFTKGKSFRHEKTKKKRGSYR 683

Query: 331 GGQIDLQSHSVKFN 344
           GG I +Q +S+KF+
Sbjct: 684 GGSISVQVNSIKFD 697

Related to nucleologenesis, may play a role in the maintenance of the fundamental structure of the fibrillar center and dense fibrillar component in the nucleolus. It has intrinsic GTPase and ATPase activities. May play an important role in transcription catalyzed by RNA polymerase I.

Homo sapiens (taxid: 9606)

>sp|P32583|SRP40_YEAST Suppressor protein SRP40 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SRP40 PE=1 SV=2

 Score = 70.1 bits (170), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 45/75 (60%), Gaps = 3/75 (4%)

Query: 269 KAFQRVKVDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFRHEKTKKKRGS 328
           K F RV   ++ F    L DN+Y    GA   +G KA E LG+VRG+DF   K K KRGS
Sbjct: 333 KHFSRVDRSKINFEAWELTDNTY---KGAAGTWGEKANEKLGRVRGKDFTKNKNKMKRGS 389

Query: 329 YRGGQIDLQSHSVKF 343
           YRGG I L+S S KF
Sbjct: 390 YRGGSITLESGSYKF 404

Not known; weak suppressor of a mutant of the subunit AC40 of DNA dependent RNA polymerase I and III.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9P785|YNY5_SCHPO LisH domain-containing protein C1711.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1711.05 PE=4 SV=1

 Score = 54.7 bits (130), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 42/75 (56%), Gaps = 5/75 (6%)

Query: 270 AFQRV-KVDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFRHEKTKKKRGS 328
            F RV    + +F    L+DNS+  +D     YG  A   L   RG+ FR EK KKKRGS
Sbjct: 381 PFTRVGDPSQWDFASPALRDNSFNFEDD----YGTLANRDLIVTRGKGFRQEKNKKKRGS 436

Query: 329 YRGGQIDLQSHSVKF 343
           YRGG+I+ +  S KF
Sbjct: 437 YRGGRINTEVRSFKF 451


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.300    0.120    0.312 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128,854,675
Number of Sequences: 539616
Number of extensions: 5728519
Number of successful extensions: 60561
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 3753
Number of HSP's that attempted gapping in prelim test: 31153
Number of HSP's gapped (non-prelim): 17407
length of query: 349
length of database: 191,569,459
effective HSP length: 118
effective length of query: 231
effective length of database: 127,894,771
effective search space: 29543692101
effective search space used: 29543692101
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 62 (28.5 bits)

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	349
224090503	271	predicted protein [Populus trichocarpa]	0.704	0.907	0.558	1e-60
224144304	181	predicted protein [Populus trichocarpa]	0.504	0.972	0.702	1e-59
359485125	425	PREDICTED: uncharacterized protein LOC10	0.501	0.411	0.600	9e-55
357479491	382	Nucleolar and coiled-body phosphoprotein	0.478	0.437	0.633	6e-45
388514929	410	unknown [Medicago truncatula]	0.478	0.407	0.633	7e-45
357479493	341	Nucleolar and coiled-body phosphoprotein	0.478	0.489	0.633	7e-45
449432550	426	PREDICTED: uncharacterized protein LOC10	0.598	0.490	0.497	4e-44
449520641	325	PREDICTED: uncharacterized protein LOC10	0.438	0.470	0.583	7e-44
356548188	374	PREDICTED: uncharacterized protein LOC10	0.481	0.449	0.610	1e-43
356562052	347	PREDICTED: uncharacterized protein LOC10	0.406	0.409	0.653	9e-41

>gi|224090503|ref|XP_002309003.1| predicted protein [Populus trichocarpa] gi|222854979|gb|EEE92526.1| predicted protein [Populus trichocarpa]

 Score =  239 bits (611), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 139/249 (55%), Positives = 178/249 (71%), Gaps = 3/249 (1%)

Query: 101 EVLGTEGKHGTKAKESESARDFLATETTATNGNIASVEDESVKDKGKKKQKDGSVSKSSF 160
           +V  +EG   T +K     +D    +   ++ +  S ++++VK + +K +KD  VS+   
Sbjct: 26  DVSSSEGNKATVSKTENKPKDKKNKKNKLSDADADSNDNKNVKYEERKNKKDIVVSE--- 82

Query: 161 DVDSKEIGEQKSGRTESKNDRNKTSEEDTTDKERKGSKKRKRLASEEKDSEPNDKMEVEE 220
           ++  + + E KS + +S+ D +K SE+D  DKE K SKKRKRL SE+  ++P D+  VE+
Sbjct: 83  NMSVETLDEGKSNKVDSEKDDSKNSEKDVNDKENKSSKKRKRLPSEDDATQPADEKAVED 142

Query: 221 SKRRKTEGSEELKINDDQVNGTDKNEEKSAPNKTRKKQANGSAEPKSVKAFQRVKVDEVE 280
           SKRRK E SEE K N       +KN EKS+  K+ KK+ NGS EPK+VK FQRVKVDEV 
Sbjct: 143 SKRRKMESSEEPKENGSANGNLEKNGEKSSLQKSMKKEKNGSVEPKTVKHFQRVKVDEVV 202

Query: 281 FTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHS 340
           F+DERLKDNSYWAKDGAE GYGAKAQ+VLGQVRGRDFRHEKTKKKRG+YRGGQIDLQSHS
Sbjct: 203 FSDERLKDNSYWAKDGAEEGYGAKAQDVLGQVRGRDFRHEKTKKKRGTYRGGQIDLQSHS 262

Query: 341 VKFNYSDEE 349
            KFNYSDE+
Sbjct: 263 FKFNYSDED 271

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144304|ref|XP_002325253.1| predicted protein [Populus trichocarpa] gi|222866687|gb|EEF03818.1| predicted protein [Populus trichocarpa]

 Score =  236 bits (601), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 125/178 (70%), Positives = 144/178 (80%), Gaps = 2/178 (1%)

Query: 173 GRTESKNDRNKTSEEDTTDKERKGSKKRKRLASEEKDSEPNDKMEVEESKRRKTEGSEEL 232
           G++ S+ D +K  +ED  DKE K SKKRKRL+SE+   +P ++  +EESKRRKTE SEEL
Sbjct: 5   GKSNSEKDDSKNLKEDVNDKENKSSKKRKRLSSEDDAPQPANETAIEESKRRKTESSEEL 64

Query: 233 KINDDQVNGT-DKNEEKSAPNKTRKKQANGSAEPKSVKAFQRVKVDEVEFTDERLKDNSY 291
           K N  Q NG  ++N  KSAP K+  K+ NGS EPK+VK FQRVKVDEV F+DERLKDNSY
Sbjct: 65  KENV-QANGNLEENGAKSAPQKSMMKEKNGSVEPKTVKHFQRVKVDEVVFSDERLKDNSY 123

Query: 292 WAKDGAEIGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHSVKFNYSDEE 349
           WAKDGAE GYGAKAQEVLGQVRGR FRHEKTKKKRG+YRGGQIDLQSHS KFNYSDE+
Sbjct: 124 WAKDGAEDGYGAKAQEVLGQVRGRGFRHEKTKKKRGTYRGGQIDLQSHSFKFNYSDED 181

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485125|ref|XP_002262877.2| PREDICTED: uncharacterized protein LOC100240988 [Vitis vinifera]

 Score =  220 bits (560), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 122/203 (60%), Positives = 144/203 (70%), Gaps = 28/203 (13%)

Query: 174 RTESKNDRNKTSEEDTTDKERKGSKKRKRLASEEKDSEPNDKMEVEESKRRKTEGSEE-- 231
           RT+SK+  ++T EED  D++ K SKKRKRLA EE +S+P DK+ VE+SKR+KTE S+E  
Sbjct: 224 RTDSKSSNSQTVEEDALDEDDKVSKKRKRLACEESNSQPADKVVVEKSKRQKTESSKESD 283

Query: 232 ------------------------LKINDDQVNGT-DKNEEKSAPNKTRKKQANGSAEPK 266
                                    K  D Q NG  DKN EKS   K  K Q N S EPK
Sbjct: 284 GIKLLKEVKESLGSDLDEGDKGKVAKQLDVQANGILDKNGEKSTARKQVKNQQN-STEPK 342

Query: 267 SVKAFQRVKVDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFRHEKTKKKR 326
           +V AFQRVK+DEVEF D+RL+DNSYWAK GA+ GYGAKAQE+LGQVRGRDFRHEKTKKKR
Sbjct: 343 TVNAFQRVKIDEVEFADQRLQDNSYWAKGGADSGYGAKAQEILGQVRGRDFRHEKTKKKR 402

Query: 327 GSYRGGQIDLQSHSVKFNYSDEE 349
           GSYRGGQIDLQ+HS+KFNYSD++
Sbjct: 403 GSYRGGQIDLQTHSIKFNYSDDD 425

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357479491|ref|XP_003610031.1| Nucleolar and coiled-body phosphoprotein [Medicago truncatula] gi|355511086|gb|AES92228.1| Nucleolar and coiled-body phosphoprotein [Medicago truncatula]

 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 109/172 (63%), Positives = 131/172 (76%), Gaps = 5/172 (2%)

Query: 180 DRNKTSEEDTTDKERKGSKKRKRLASEEKDSEPNDKMEV-EESKRRKTEGSEELKINDDQ 238
           D + T+EE    +E+K SKKRKR  S+E D E + +M+V EE+KRRK E   E K  +DQ
Sbjct: 214 DPDATNEE-AIPEEKKDSKKRKRPISKEND-EQDTEMKVDEETKRRKIENGSESK-GEDQ 270

Query: 239 VNGTDKNEEKSAPNKTRKKQANGSAEPKSVKA-FQRVKVDEVEFTDERLKDNSYWAKDGA 297
               + + E  A  K++KK+   S+E K VKA FQRV+VD+VEF DERL+DNSYWAKDGA
Sbjct: 271 SAKPNGHSENGAVQKSQKKKHKESSEQKPVKAAFQRVQVDKVEFVDERLQDNSYWAKDGA 330

Query: 298 EIGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHSVKFNYSDEE 349
           E GYGAKA+E+LGQVRGRDFRHEKTKKKRG+YRGG IDL SHSVKFNYSDEE
Sbjct: 331 ESGYGAKAEEILGQVRGRDFRHEKTKKKRGTYRGGLIDLHSHSVKFNYSDEE 382

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388514929|gb|AFK45526.1| unknown [Medicago truncatula]

 Score =  187 bits (475), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 109/172 (63%), Positives = 131/172 (76%), Gaps = 5/172 (2%)

Query: 180 DRNKTSEEDTTDKERKGSKKRKRLASEEKDSEPNDKMEV-EESKRRKTEGSEELKINDDQ 238
           D + T+EE    +E+K SKKRKR  S+E D E + +M+V EE+KRRK E   E K  +DQ
Sbjct: 242 DPDATNEE-AIPEEKKDSKKRKRPISKEND-EQDTEMKVDEETKRRKIENGSESK-GEDQ 298

Query: 239 VNGTDKNEEKSAPNKTRKKQANGSAEPKSVKA-FQRVKVDEVEFTDERLKDNSYWAKDGA 297
               + + E  A  K++KK+   S+E K VKA FQRV+VD+VEF DERL+DNSYWAKDGA
Sbjct: 299 SAKPNGHSENGAVQKSQKKKHKESSEQKPVKAAFQRVQVDKVEFVDERLQDNSYWAKDGA 358

Query: 298 EIGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHSVKFNYSDEE 349
           E GYGAKA+E+LGQVRGRDFRHEKTKKKRG+YRGG IDL SHSVKFNYSDEE
Sbjct: 359 ESGYGAKAEEILGQVRGRDFRHEKTKKKRGTYRGGLIDLHSHSVKFNYSDEE 410

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357479493|ref|XP_003610032.1| Nucleolar and coiled-body phosphoprotein [Medicago truncatula] gi|355511087|gb|AES92229.1| Nucleolar and coiled-body phosphoprotein [Medicago truncatula]

 Score =  187 bits (474), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 109/172 (63%), Positives = 131/172 (76%), Gaps = 5/172 (2%)

Query: 180 DRNKTSEEDTTDKERKGSKKRKRLASEEKDSEPNDKMEV-EESKRRKTEGSEELKINDDQ 238
           D + T+EE    +E+K SKKRKR  S+E D E + +M+V EE+KRRK E   E K  +DQ
Sbjct: 173 DPDATNEE-AIPEEKKDSKKRKRPISKEND-EQDTEMKVDEETKRRKIENGSESK-GEDQ 229

Query: 239 VNGTDKNEEKSAPNKTRKKQANGSAEPKSVKA-FQRVKVDEVEFTDERLKDNSYWAKDGA 297
               + + E  A  K++KK+   S+E K VKA FQRV+VD+VEF DERL+DNSYWAKDGA
Sbjct: 230 SAKPNGHSENGAVQKSQKKKHKESSEQKPVKAAFQRVQVDKVEFVDERLQDNSYWAKDGA 289

Query: 298 EIGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHSVKFNYSDEE 349
           E GYGAKA+E+LGQVRGRDFRHEKTKKKRG+YRGG IDL SHSVKFNYSDEE
Sbjct: 290 ESGYGAKAEEILGQVRGRDFRHEKTKKKRGTYRGGLIDLHSHSVKFNYSDEE 341

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432550|ref|XP_004134062.1| PREDICTED: uncharacterized protein LOC101208847 [Cucumis sativus]

 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 123/247 (49%), Positives = 150/247 (60%), Gaps = 38/247 (15%)

Query: 123 LATETTATNGNIASVEDESVKDKGKKKQKDGSVSKSSFDVDSKEIGEQKSGRTESKNDRN 182
           +A ++   NG++AS+E E V     KK+KDG  S       S E   Q +  T      N
Sbjct: 198 IAVDSIGLNGDVASLE-EKVVKSKTKKKKDGRHS-------SHENSNQLNDGT------N 243

Query: 183 KTSEEDTTDKERKGSKKRKRLASEEKDSEPNDKMEVEESKRRKTEGS-------EELKIN 235
             +EE+  D     SKKRKRLASE+ D    ++   E+ KRRK E S       +  K++
Sbjct: 244 ILNEEEQNDI----SKKRKRLASEDNDIPAVNEKATEDVKRRKLECSKGGSDSVQSTKVD 299

Query: 236 DDQVNGTDKNE-------------EKSAPNKTRKKQANGSAEPKSVKAFQRVKVDEVEFT 282
            D  N +  NE             EK++  K  KK +NGS EPK++  FQRVKVD V F 
Sbjct: 300 VDAGNRSTINEVSPQTNEYVEKTAEKTSTKKAFKKHSNGSTEPKTINPFQRVKVDAVTFA 359

Query: 283 DERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHSVK 342
           DE+L DNSYWAK GAE GYGAKAQEVLGQV+GR FRHEKTKKKRGSYRGG IDLQSHSVK
Sbjct: 360 DEKLADNSYWAKGGAESGYGAKAQEVLGQVKGRGFRHEKTKKKRGSYRGGVIDLQSHSVK 419

Query: 343 FNYSDEE 349
           FNYSD++
Sbjct: 420 FNYSDDD 426

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520641|ref|XP_004167342.1| PREDICTED: uncharacterized protein LOC101231340, partial [Cucumis sativus]

 Score =  184 bits (466), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 101/173 (58%), Positives = 118/173 (68%), Gaps = 20/173 (11%)

Query: 197 SKKRKRLASEEKDSEPNDKMEVEESKRRKTEGS-------EELKINDDQVNGTDKNE--- 246
           SKKRKRLASE+ D    ++   E+ KRRK E S       +  K++ D  N +  NE   
Sbjct: 153 SKKRKRLASEDNDIPAVNEKATEDVKRRKLECSKGGSDSVQSTKVDVDAGNRSTINEVSP 212

Query: 247 ----------EKSAPNKTRKKQANGSAEPKSVKAFQRVKVDEVEFTDERLKDNSYWAKDG 296
                     EK++  K  KK +NGS EPK++  FQRVKVD V F DE+L DNSYWAK G
Sbjct: 213 QTNEYVEKTAEKTSTKKAFKKHSNGSTEPKTINPFQRVKVDAVTFADEKLADNSYWAKGG 272

Query: 297 AEIGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHSVKFNYSDEE 349
           AE GYGAKAQEVLGQV+GR FRHEKTKKKRGSYRGG IDLQSHSVKFNYSD++
Sbjct: 273 AESGYGAKAQEVLGQVKGRGFRHEKTKKKRGSYRGGVIDLQSHSVKFNYSDDD 325

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548188|ref|XP_003542485.1| PREDICTED: uncharacterized protein LOC100819339 [Glycine max]

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 108/177 (61%), Positives = 127/177 (71%), Gaps = 9/177 (5%)

Query: 175 TESKNDRNKTSEEDTTDKERKGSKKRKRLASEEKDSEPNDKMEVEESKRRKTEGSEELKI 234
           T SK +  + S ++   +  K SKKRKR  SEE   +  D    EE+KR+K E   E K 
Sbjct: 205 TVSKEENIEASNKEMMHEVEKDSKKRKRPISEENGQQVAD----EETKRQKIENLNESK- 259

Query: 235 NDDQVNG-TDKNEEKSAPNKTRKKQANGSAEPKSVK-AFQRVKVDEVEFTDERLKDNSYW 292
             +Q NG  +K  EKS+   + KKQ  GS E K VK AFQRV+VD+++FTDERL+DNSYW
Sbjct: 260 --EQTNGNLEKGGEKSSVQGSLKKQQKGSVEKKPVKPAFQRVQVDKIQFTDERLQDNSYW 317

Query: 293 AKDGAEIGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHSVKFNYSDEE 349
           AKDGAE GYGAKA E+L QVRGR FRHEKTKKKRGSYRGGQIDLQSHSVKFNYSDE+
Sbjct: 318 AKDGAENGYGAKAAEILDQVRGRGFRHEKTKKKRGSYRGGQIDLQSHSVKFNYSDED 374

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562052|ref|XP_003549289.1| PREDICTED: uncharacterized protein LOC100793322 [Glycine max]

 Score =  173 bits (439), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 96/147 (65%), Positives = 110/147 (74%), Gaps = 5/147 (3%)

Query: 205 SEEKDSEPNDKMEVEESKRRKTEGSEELKINDDQVNGT-DKNEEKSAPNKTRKKQANGSA 263
           SEE   +  D    EE+KRRK E   E K   +Q NG  +K  EKS+   ++KKQ  GS 
Sbjct: 204 SEENGQQVADIKADEETKRRKIENLNESK---EQTNGNLEKAGEKSSVQSSQKKQQKGSV 260

Query: 264 EPKSVKA-FQRVKVDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFRHEKT 322
           E K V A FQRV+VD+++F DERL+DNSYWAKDGAE GYGAKA E+L QVRGR FRHEKT
Sbjct: 261 EKKPVNAAFQRVQVDKIQFADERLQDNSYWAKDGAENGYGAKAAEILDQVRGRGFRHEKT 320

Query: 323 KKKRGSYRGGQIDLQSHSVKFNYSDEE 349
           KKKRGSYRGGQIDLQSHSVKFNYSDE+
Sbjct: 321 KKKRGSYRGGQIDLQSHSVKFNYSDED 347

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	349
TAIR|locus:2175584	330	AT5G57120 "AT5G57120" [Arabido	0.489	0.518	0.521	9.6e-44
UNIPROTKB|Q14978	699	NOLC1 "Nucleolar and coiled-bo	0.495	0.247	0.338	2.1e-22
RGD|621578	704	Nolc1 "nucleolar and coiled-bo	0.489	0.242	0.342	1.5e-21
CGD|CAL0005156	428	SRP40 [Candida albicans (taxid	0.871	0.710	0.28	2.9e-21
UNIPROTKB|Q5A1Y5	428	SRP40 "Putative uncharacterize	0.871	0.710	0.28	2.9e-21
ZFIN|ZDB-GENE-030131-6349	1001	nolc1 "nucleolar and coiled-bo	0.432	0.150	0.396	3.4e-20
UNIPROTKB|F1S8T1	708	NOLC1 "Uncharacterized protein	0.495	0.244	0.318	6.1e-20
UNIPROTKB|E1C1Q1	688	E1C1Q1 "Uncharacterized protei	0.484	0.245	0.346	6.7e-20
SGD|S000001800	406	SRP40 "Nucleolar serine-rich p	0.888	0.763	0.230	5.2e-19
UNIPROTKB|Q0IIG0	698	NOLC1 "Nucleolar and coiled-bo	0.389	0.194	0.38	2.3e-18

TAIR|locus:2175584 AT5G57120 "AT5G57120" [Arabidopsis thaliana (taxid:3702)]

 Score = 418 (152.2 bits), Expect = 9.6e-44, Sum P(2) = 9.6e-44
 Identities = 99/190 (52%), Positives = 121/190 (63%)

Query:   171 KSGRTESKNDRNKTSEEDTTDKERKGSKKRKRLASEEKDSEPNDKMEVEESKRRKTE--- 227
             + G  E K  ++K+   +  D + K SKKRKR   EE   E  D  + EESKRRK E   
Sbjct:   148 EDGVKEKKKKKSKSKSVEADDDKEKVSKKRKRSEPEETKEETED--DDEESKRRKKEENV 205

Query:   228 -----GSEELKINDDQV--NGT-DKNEEKSAPNKTRKKQANGSAEPKSVKAFQRVKVDEV 279
                  G +E  + + +   NG  +K+E KS   K+ K  +N S EPK  K FQRV VDE+
Sbjct:   206 VENDEGVQETPVKETETKENGNAEKSETKSTNQKSGKGLSN-SKEPK--KPFQRVNVDEI 262

Query:   280 EFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSH 339
              +T+     NSY++K GAEIGYG KAQEVLGQVRGRDFRHEKTKKKRGSYRGG ID +SH
Sbjct:   263 VYTEN---SNSYYSKGGAEIGYGLKAQEVLGQVRGRDFRHEKTKKKRGSYRGGLIDQESH 319

Query:   340 SVKFNYSDEE 349
             S KFN SD+E
Sbjct:   320 STKFNNSDDE 329

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|Q14978 NOLC1 "Nucleolar and coiled-body phosphoprotein 1" [Homo sapiens (taxid:9606)]

 Score = 243 (90.6 bits), Expect = 2.1e-22, Sum P(2) = 2.1e-22
 Identities = 64/189 (33%), Positives = 98/189 (51%)

Query:   171 KSGRTESKNDRNK--TSEEDTTDKERKGSKKRKR--------LASEEKDSEPNDKMEVEE 220
             K G+ ES N  +   +SEE+    + KGS + +         L ++   +  N + E EE
Sbjct:   510 KKGKAESSNSSSSDDSSEEEEEKLKGKGSPRPQAPKANGTSALTAQNGKAAKNSEEEEEE 569

Query:   221 SKRRKTEGSEELKINDDQVNGTDKNEEKSAPNKTRKKQANG-----SAEPKSVKAFQRVK 275
              K+     S+   +   + N   K  E     K + +  N        E ++   F+RV+
Sbjct:   570 KKKAAVVVSKSGSLKKRKQNEAAKEAETPQAKKIKLQTPNTFPKRKKGEKRASSPFRRVR 629

Query:   276 VDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQID 335
              +E+E  D R+ DNS+ AK GA   +G +A +VL   +G+ FRHEKTKKKRGSYRGG I 
Sbjct:   630 EEEIE-VDSRVADNSFDAKRGAAGDWGERANQVLKFTKGKSFRHEKTKKKRGSYRGGSIS 688

Query:   336 LQSHSVKFN 344
             +Q +S+KF+
Sbjct:   689 VQVNSIKFD 697

GO:0005524 "ATP binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007000 "nucleolus organization" evidence=IEA

GO:0015030 "Cajal body" evidence=IEA

GO:0006364 "rRNA processing" evidence=TAS

GO:0007049 "cell cycle" evidence=TAS

GO:0007067 "mitosis" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

RGD|621578 Nolc1 "nucleolar and coiled-body phosphoprotein 1" [Rattus norvegicus (taxid:10116)]

 Score = 246 (91.7 bits), Expect = 1.5e-21, Sum P(2) = 1.5e-21
 Identities = 61/178 (34%), Positives = 94/178 (52%)

Query:   170 QKSGRTESKNDRNKTSEEDTTDKERKGSKKRKRLASEEKDSEPNDKMEVEESKRRKTEGS 229
             + S   E K  ++K + +    K       +   A +E + E  D  + +++   K    
Sbjct:   529 EDSSEEEKKKPKSKATPKPQAGKANGVPASQNGKAGKESEEEEEDTEQNKKAAGTKPGSG 588

Query:   230 EELKIN---DDQVNGTDKNEEKSAPNKTRKKQANGSAEPKSVKAFQRVKVDEVEFTDERL 286
             ++ K N   D+      K  +   PN T  K+  G  E ++   F+RV+ +E+E  D R+
Sbjct:   589 KKRKHNETADEAATPQSKKVKLQTPN-TFPKRKKG--EKRASSPFRRVREEEIE-VDSRV 644

Query:   287 KDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHSVKFN 344
              DNS+ AK GA   +G +A +VL   +G+ FRHEKTKKKRGSYRGG I +Q +SVKF+
Sbjct:   645 ADNSFDAKRGAAGDWGERANQVLKFTKGKSFRHEKTKKKRGSYRGGSISVQVNSVKFD 702

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005654 "nucleoplasm" evidence=ISO;IDA

GO:0005730 "nucleolus" evidence=IEA;ISO;IDA

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0007000 "nucleolus organization" evidence=IEA;ISO

GO:0008134 "transcription factor binding" evidence=IPI

GO:0008139 "nuclear localization sequence binding" evidence=IDA

GO:0008284 "positive regulation of cell proliferation" evidence=IGI

GO:0015030 "Cajal body" evidence=IEA;ISO

GO:0019904 "protein domain specific binding" evidence=IPI

GO:0033979 "box H/ACA snoRNA metabolic process" evidence=IGI

GO:0034512 "box C/D snoRNA binding" evidence=IDA

GO:0034513 "box H/ACA snoRNA binding" evidence=IDA

GO:0042306 "regulation of protein import into nucleus" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0003677 "DNA binding" evidence=IDA

CGD|CAL0005156 SRP40 [Candida albicans (taxid:5476)]

 Score = 253 (94.1 bits), Expect = 2.9e-21, P = 2.9e-21
 Identities = 91/325 (28%), Positives = 132/325 (40%)

Query:    29 KRGKEAESAAG-VETVSKKKKKR-SNEDVHTIVVQSEDSGELANSKETEXXXXXXXXXXX 86
             K  K+ ES    VE   KK K R S+ D      +SE S    +  E+            
Sbjct:   113 KVSKQLESIIDEVENQEKKSKPRNSSSDSEDSSSESESS---TSDSESSSSDSDSSSSDS 169

Query:    87 XXXXLDSESLVNDVEVLGTE-GKHGTKA----KESESARDFLATETTATNGNIASVEDEX 141
                  DSES  +D E    E  K   +A    K+SE + +    E      + +S   + 
Sbjct:   170 ESSSSDSESSSSDSEDSDDEEDKEDKEAEKDNKDSEDSENEKVEEDNKDTSSDSSSSSDS 229

Query:   142 XXXXXXXXXXXXXXXXXXXXXXXXEIGEQKSGRTESKNDRNKTSEEDTTDKERKGSKKRK 201
                                     +        + S +D +  S+ D+ D +   S+   
Sbjct:   230 KSDSDSDSSSSSDSSSDSDSSSDSDSSSSSDSDSSSSSDSDSDSDSDS-DSDDNSSESSS 288

Query:   202 RLASEEKDSEPNDKMEVEESKRRKTEGSEELKINDDQVNGTDKNE-EKSAPNKTRKKQAN 260
                    DSE  ++ +  E K+RK   ++++K  +++     KNE E SA + T    A 
Sbjct:   289 EDEESSSDSESKEEQKQPEDKKRKH--TDDIK--EEKPVKKFKNESESSASSSTDSIPAT 344

Query:   261 GSAE--PKSVKAFQRVKVDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFR 318
                E  P   K F R+   +V F +  L+DN+Y    GA   +G KA E L QVRG+DF 
Sbjct:   345 PEPELKPGQRKHFSRIDRSKVNFENSVLQDNTY---KGAAGTWGEKASEKLLQVRGKDFT 401

Query:   319 HEKTKKKRGSYRGGQIDLQSHSVKF 343
               K K KRGSY+GG I L S S KF
Sbjct:   402 KNKNKMKRGSYKGGSITLASGSYKF 426

GO:0003674 "molecular_function" evidence=ND

GO:0005730 "nucleolus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5A1Y5 SRP40 "Putative uncharacterized protein SRP40" [Candida albicans SC5314 (taxid:237561)]

 Score = 253 (94.1 bits), Expect = 2.9e-21, P = 2.9e-21
 Identities = 91/325 (28%), Positives = 132/325 (40%)

Query:    29 KRGKEAESAAG-VETVSKKKKKR-SNEDVHTIVVQSEDSGELANSKETEXXXXXXXXXXX 86
             K  K+ ES    VE   KK K R S+ D      +SE S    +  E+            
Sbjct:   113 KVSKQLESIIDEVENQEKKSKPRNSSSDSEDSSSESESS---TSDSESSSSDSDSSSSDS 169

Query:    87 XXXXLDSESLVNDVEVLGTE-GKHGTKA----KESESARDFLATETTATNGNIASVEDEX 141
                  DSES  +D E    E  K   +A    K+SE + +    E      + +S   + 
Sbjct:   170 ESSSSDSESSSSDSEDSDDEEDKEDKEAEKDNKDSEDSENEKVEEDNKDTSSDSSSSSDS 229

Query:   142 XXXXXXXXXXXXXXXXXXXXXXXXEIGEQKSGRTESKNDRNKTSEEDTTDKERKGSKKRK 201
                                     +        + S +D +  S+ D+ D +   S+   
Sbjct:   230 KSDSDSDSSSSSDSSSDSDSSSDSDSSSSSDSDSSSSSDSDSDSDSDS-DSDDNSSESSS 288

Query:   202 RLASEEKDSEPNDKMEVEESKRRKTEGSEELKINDDQVNGTDKNE-EKSAPNKTRKKQAN 260
                    DSE  ++ +  E K+RK   ++++K  +++     KNE E SA + T    A 
Sbjct:   289 EDEESSSDSESKEEQKQPEDKKRKH--TDDIK--EEKPVKKFKNESESSASSSTDSIPAT 344

Query:   261 GSAE--PKSVKAFQRVKVDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFR 318
                E  P   K F R+   +V F +  L+DN+Y    GA   +G KA E L QVRG+DF 
Sbjct:   345 PEPELKPGQRKHFSRIDRSKVNFENSVLQDNTY---KGAAGTWGEKASEKLLQVRGKDFT 401

Query:   319 HEKTKKKRGSYRGGQIDLQSHSVKF 343
               K K KRGSY+GG I L S S KF
Sbjct:   402 KNKNKMKRGSYKGGSITLASGSYKF 426

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-030131-6349 nolc1 "nucleolar and coiled-body phosphoprotein 1" [Danio rerio (taxid:7955)]

 Score = 231 (86.4 bits), Expect = 3.4e-20, Sum P(2) = 3.4e-20
 Identities = 67/169 (39%), Positives = 91/169 (53%)

Query:   183 KTSEEDTTDKERKGSKKRKRLASEEK-DSEPNDKMEVEESKRRKTEGSEELKINDDQVNG 241
             KT     T    K     K+ A+E K +S  +++   EE     T G++  K        
Sbjct:   847 KTPPATKTPPATKTPPATKKQAAEAKAESSSSEESSEEEETPAATNGTQSAK------KA 900

Query:   242 TDKNEE--KSAPNK-TRKKQANGSAEPKSVKAFQRVKVDEVEFTDERLKDNSYWAKDGAE 298
             T KN++   S P    R KQ + +A P     F+R++ ++VE  D RLKDNS+ AK GA 
Sbjct:   901 TPKNKKIATSTPQTFPRTKQKDSNA-P-----FRRIREEDVE-VDPRLKDNSFDAKMGAN 953

Query:   299 IGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHSVKFNYSD 347
               +G KA  VL   +G+ FRHEKTKKKRGSYRGG I    +S+KF+ SD
Sbjct:   954 GDWGQKANNVLKFTKGKSFRHEKTKKKRGSYRGGAISTTVNSIKFD-SD 1001

GO:0048701 "embryonic cranial skeleton morphogenesis" evidence=IMP

UNIPROTKB|F1S8T1 NOLC1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 231 (86.4 bits), Expect = 6.1e-20, Sum P(2) = 6.1e-20
 Identities = 59/185 (31%), Positives = 92/185 (49%)

Query:   171 KSGRTESKNDRNKTSEED-----TTDKERKGSKKRKRLASEEKDSEPNDKMEVEESKRRK 225
             +S  + S +D ++  EED     +T K +          + +      D  E EE K++ 
Sbjct:   523 ESSSSSSSDDSSEEEEEDKPKGKSTPKPQAPKANGTTALTAQNGKADRDSNEEEEDKKKA 582

Query:   226 TEGSEELKINDDQVNGTDKNEEKSAPNKTRKKQANGS------AEPKSVKAFQRVKVDEV 279
               G  +      +       E ++ P K  K Q   +       E +    F+R++ +E+
Sbjct:   583 AVGVSKPGSGKKRKQNEAAKETETPPAKKIKPQTPNTFPKRKKGERRGSSPFRRIREEEI 642

Query:   280 EFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSH 339
             E  D R+ DNS+ AK GA   +G +A +VL   +G+ FRHEKTKKKRGSYRGG I +Q +
Sbjct:   643 E-VDARVADNSFDAKRGAAGDWGERANQVLKFTKGKSFRHEKTKKKRGSYRGGSISVQVN 701

Query:   340 SVKFN 344
             S+KF+
Sbjct:   702 SIKFD 706

GO:0015030 "Cajal body" evidence=IEA

GO:0007000 "nucleolus organization" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|E1C1Q1 E1C1Q1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 246 (91.7 bits), Expect = 6.7e-20, P = 6.7e-20
 Identities = 62/179 (34%), Positives = 98/179 (54%)

Query:   168 GEQKSGRTESKNDRNKTSEEDTTDKERK---GSKKRKRLASEEKDSEPNDKMEVEESKRR 224
             G Q + +T +  ++ K+S     +++ K    S      +SEE+  + N ++     K++
Sbjct:   514 GAQNTSQTAASTEKAKSSMPAAKNQKSKPAGDSSSSSESSSEEEKGKANGELTGLAKKKQ 573

Query:   225 KTEGSEELKINDDQVNGTDKNEEKSAPNKTRKKQANGSAEPKSVKAFQRVKVDEVEFTDE 284
             K E  +E +  D   N   KN+ K+     + K+ +   E K+   F+RV+ +E+E  D 
Sbjct:   574 KREDVQESETPD---NKKAKNKPKTPHTVPKVKRVS---ESKASSPFRRVREEEIE-VDA 626

Query:   285 RLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHSVKF 343
             R+ DNS+ AK GA   +G KA  +L   +G+ FRHEKTKKKRGSY GG I  Q +S+KF
Sbjct:   627 RVADNSFDAKKGAAGDWGEKANNILKFTKGKSFRHEKTKKKRGSYCGGTISTQVNSIKF 685

GO:0005730 "nucleolus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007000 "nucleolus organization" evidence=IEA

GO:0015030 "Cajal body" evidence=IEA

SGD|S000001800 SRP40 "Nucleolar serine-rich protein" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 232 (86.7 bits), Expect = 5.2e-19, P = 5.2e-19
 Identities = 75/325 (23%), Positives = 131/325 (40%)

Query:    21 DSQKDGDSKR-GKEAESAAGVETVSKKKKKRSNEDVHTIVVQSEDSGELANSK-ETEXXX 78
             +S  + DS   G  + S++  +  S + +             +ED+ E   +K E E   
Sbjct:    93 ESSSESDSSSSGSSSSSSSSSDESSSESESEDETKKRARESDNEDAKETKKAKTEPESSS 152

Query:    79 XXXXXXXXXXXXLDSESLVNDVEVLGTEGKHGTKAKESESARDFLATETTATNGNIASVE 138
                          +SES  ++ +   +     +   ES+S  D   +++++++ +  S  
Sbjct:   153 SSESSSSGSSSSSESES-GSESDSDSSSSSSSSSDSESDSESD---SQSSSSSSSSDSSS 208

Query:   139 DEXXXXXXXXXXXXXXXXXXXXXXXXXEIGEQKSGRTESKNDRNKTSEEDTTDKERKGSK 198
             D                             +  S  ++S    + +S  D++  E   S 
Sbjct:   209 DSDSSSSDSSSDSDSSSSSSSSSSDSDSDSDSSSD-SDSSGSSDSSSSSDSSSDESTSSD 267

Query:   199 KRKRLASEEKDSEPNDKMEVEESKRRKTEGSEELKINDDQVNGTDKNEEKSAPNKTRKKQ 258
                  +  + DS  + ++E +E+   +++ +EE   + ++   T      S+ NK     
Sbjct:   268 SSD--SDSDSDSGSSSELETKEATADESK-AEETPASSNE--STPSASSSSSANKLNIPA 322

Query:   259 ANGSAEPKSVKAFQRVKVDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFR 318
                  +    K F RV   ++ F    L DN+Y    GA   +G KA E LG+VRG+DF 
Sbjct:   323 GTDEIKEGQRKHFSRVDRSKINFEAWELTDNTY---KGAAGTWGEKANEKLGRVRGKDFT 379

Query:   319 HEKTKKKRGSYRGGQIDLQSHSVKF 343
               K K KRGSYRGG I L+S S KF
Sbjct:   380 KNKNKMKRGSYRGGSITLESGSYKF 404

GO:0003674 "molecular_function" evidence=ND

GO:0006913 "nucleocytoplasmic transport" evidence=ISS

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|Q0IIG0 NOLC1 "Nucleolar and coiled-body phosphoprotein 1" [Bos taurus (taxid:9913)]

 Score = 224 (83.9 bits), Expect = 2.3e-18, Sum P(2) = 2.3e-18
 Identities = 57/150 (38%), Positives = 87/150 (58%)

Query:   199 KRKRLASEEKDSEPNDKMEV----EESKRRKTEGSEELKINDDQVNGTDKNEEKSAPNKT 254
             K  R ++EE++ +    + V     E K++K E ++E +          K  +   PN T
Sbjct:   557 KADRGSNEEEEEKKKAAVAVAKPGSEKKKKKNEAAKEAE------TPPAKKIKPQTPN-T 609

Query:   255 RKKQANGSAEPKSVKAFQRVKVDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRG 314
               K+  G  E ++   F+R++ +E+E  D R+ DNS+ AK GA   +G +A +VL   +G
Sbjct:   610 FPKRKKG--ERRASSPFRRIREEEIE-VDARVADNSFDAKRGAAGDWGERANQVLKFTKG 666

Query:   315 RDFRHEKTKKKRGSYRGGQIDLQSHSVKFN 344
             + FRHEKTKKKRGSYRGG I +Q +SVKF+
Sbjct:   667 KSFRHEKTKKKRGSYRGGSISVQVNSVKFD 696

GO:0015030 "Cajal body" evidence=IEA

GO:0007000 "nucleolus organization" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0023007001 hypothetical protein (272 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	349
pfam05022	72	pfam05022, SRP40_C, SRP40, C-terminal domain	7e-28
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	0.002
PTZ00108	1388	PTZ00108, PTZ00108, DNA topoisomerase 2-like prote	0.002

>gnl|CDD|191166 pfam05022, SRP40_C, SRP40, C-terminal domain

 Score =  103 bits (259), Expect = 7e-28
 Identities = 44/75 (58%), Positives = 51/75 (68%), Gaps = 3/75 (4%)

Query: 269 KAFQRVKVDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFRHEKTKKKRGS 328
           K F R+  +++EF DERLKDNSY  K G    YG KA E LG VRG+ F  EK KKKRGS
Sbjct: 1   KPFSRIDREKIEFEDERLKDNSYKGKAG---TYGEKANEDLGVVRGKGFTKEKNKKKRGS 57

Query: 329 YRGGQIDLQSHSVKF 343
           YRGG ID   +S+KF
Sbjct: 58  YRGGSIDSAVNSIKF 72

This presumed domain is found at the C-terminus of the S. cerevisiae SRP40 protein and its homologues. SRP40/nopp40 is a chaperone involved in nucleocytoplasmic transport. SRP40 is also a suppressor of mutant AC40 subunit of RNA polymerase I and III. Length = 72

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 39.7 bits (92), Expect = 0.002
 Identities = 38/165 (23%), Positives = 69/165 (41%), Gaps = 25/165 (15%)

Query: 107 GKHGTKAKESESARDFLAT---ETTATNGNIASVEDESVKDKGKKKQKDGSVSKSSFDVD 163
           GKH  + + S  +   L +   + TA+    AS  +E  +  G+      S S +    D
Sbjct: 1   GKHSMRTRRSRGSMSTLRSGRKKQTASPDGRASPTNEDQRSSGRNSPSAASTSSN----D 56

Query: 164 SKEIGEQKSGRTESKNDRNKTSEEDTTDKERKGSKKRKRLASEEKDSEPNDKMEVEESKR 223
           SK          ES    NK  +E+ T   +   ++R++ AS+ ++ E         +K+
Sbjct: 57  SK---------AESTKKPNKKIKEEATSPLKSTKRQREKPASDTEEPER------VTAKK 101

Query: 224 RKTEGSEELKINDDQVNGTDKNEEKSAPNKTRKKQANGSAEPKSV 268
            KT   +EL   +    G  + E +   + +R     GS++PK +
Sbjct: 102 SKT---QELSRPNSPSEGEGEGEGEGESSDSRSVNEEGSSDPKDI 143

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 32/229 (13%), Positives = 73/229 (31%), Gaps = 5/229 (2%)

Query: 28   SKRGKEAESAAGVETVSKKKKKRSNEDVHTIVVQSEDSGELANSKETEKEKSKQNNKRKK 87
            SK   +A      +   K+KKK+ +    +       + +  +S E  K   K +NK+  
Sbjct: 1160 SKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSN 1219

Query: 88   KVKLDSESLVNDVEVLGTEGKHGTKAKESESARDFLATETTATNGNIASVEDESVKDKGK 147
                D E                 K+K++ S++     +  +++      ++   K+  K
Sbjct: 1220 SSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSD---DLSKEGKPKNAPK 1276

Query: 148  KKQKDGSVSKSSFDVDSKEIGEQKSGRTESKNDRNKTSEEDTTDKERKGSKKRKRLASEE 207
            +                 E        + +K    K  E      ++K   ++K    ++
Sbjct: 1277 RVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKK 1336

Query: 208  KDSEPND--KMEVEESKRRKTEGSEELKINDDQVNGTDKNEEKSAPNKT 254
              +        +     RR  +   +    DD  +  D +E++   +  
Sbjct: 1337 SKTRVKQASASQSSRLLRRPRKKKSDSSSEDDDDSEVDDSEDEDDEDDE 1385

Length = 1388

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	349
PF05022	72	SRP40_C: SRP40, C-terminal domain; InterPro: IPR00	100.0
KOG2992	446	consensus Nucleolar GTPase/ATPase p130 [Nuclear st	99.69

>PF05022 SRP40_C: SRP40, C-terminal domain; InterPro: IPR007718 This presumed domain is found at the C terminus of the Saccharomyces cerevisiae SRP40 protein P32583 from SWISSPROT and its homologues

Probab=100.00  E-value=6.7e-34  Score=222.63  Aligned_cols=72  Identities=65%  Similarity=0.927  Sum_probs=69.7

Q ss_pred             CCCccccCCceeeccccccCCcccccCCCCcchHHHHHhHhccccCCcccccccccccccccCceeecccceeeC
Q 018866          269 KAFQRVKVDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHSVKF  343 (349)
Q Consensus       269 ~PFqRV~~eev~f~DerL~DNSYeAK~Ga~d~wGeKAnedL~~TRGKgFRKEKnKKKRGSYRGG~ID~svnSIKF  343 (349)
                      .|||||++++|+|+|++|+||||+++.   ++||++||++|++||||+|||||||||||||+||+||++||||||
T Consensus         1 ~pF~RV~~~~v~~~d~~l~dNsy~~~~---~~~G~kA~~~L~~trGK~FrkEK~KkKRgsy~GG~Id~~v~SiKF   72 (72)
T PF05022_consen    1 KPFQRVDEEKVEFVDERLKDNSYEAKF---DGWGEKANEDLIVTRGKGFRKEKNKKKRGSYRGGQIDTSVNSIKF   72 (72)
T ss_pred             CCCcccChhheeecCcccccCCCcccc---ChHHHHHHhhhccccCCCccccccccccccccCCeecCccceeeC
Confidence            499999999999999999999999975   689999999999999999999999999999999999999999999

SRP40/nopp40 is a chaperone involved in nucleocytoplasmic transport. SRP40 is also a suppressor of mutant AC40 subunit of RNA polymerase I and III.

>KOG2992 consensus Nucleolar GTPase/ATPase p130 [Nuclear structure]

Probab=99.69  E-value=1.2e-17  Score=165.63  Aligned_cols=80  Identities=48%  Similarity=0.691  Sum_probs=68.1

Q ss_pred             CCCCCCCCccccCCceeeccccccCCcccccCCCCcchHHHHHhHhccccCCcccccccccccccccCceeecccceeeC
Q 018866          264 EPKSVKAFQRVKVDEVEFTDERLKDNSYWAKDGAEIGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHSVKF  343 (349)
Q Consensus       264 ~pk~n~PFqRV~~eev~f~DerL~DNSYeAK~Ga~d~wGeKAnedL~~TRGKgFRKEKnKKKRGSYRGG~ID~svnSIKF  343 (349)
                      ..++..|||||++.++.++-..   |+|..+.|+.++||.+|+++|++|||++|||+|||||||+||||.|++.+++|+|
T Consensus       367 ~~t~~~~~r~~~~~kd~~~~~~---~~~~~~~~~~~~wG~~An~~l~~~rGk~fr~eKtkkkRgsy~gG~I~~~~~s~kF  443 (446)
T KOG2992|consen  367 SETKKSPFRRVDPVKDSRVEDI---LSDNKKDGAAGGWGKRANKDLGPGRGKDFRHEKTKKKRGSYRGGSITLDVNSIKF  443 (446)
T ss_pred             cccCCCCccccccccccccccc---cccccccccccccccccccccccccccccccccccccCccccCCccccccccccc
Confidence            3455579999977766654333   6666666788999999999999999999999999999999999999999999999


Q ss_pred             CCC
Q 018866          344 NYS  346 (349)
Q Consensus       344 dDS  346 (349)
                      +++
T Consensus       444 ~~~  446 (446)
T KOG2992|consen  444 DLS  446 (446)
T ss_pred             CCC
Confidence            975

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00