Citrus Sinensis ID: 018901

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35
MASIRSLSFMVETKADSYVVLFSKNQYRPSSSFSAFRPKKSPIFAFLNNSVSGFSFRSNKSGHLLKVKHVKATGAGFVEDESGNEPEDSLQATIEKSKKVLAMQKQLLQQISERRKLVSSIKSDIANSEEDEVSYEERENSFSDLDFTSTSSSNVVENQNGIIPSSSGDHSTANEAPKLQSSAANRGPDAGGKESENRLSPEKESIDIDSSKLLKGTDTQSTWSDELPSFLSRTAVISSPKEERHEKDLDQVQQIDSEPIEPKTEEAKPPPLAGANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQSFVSPSRK
cccccccccEEEcccccEEEEEEccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccEEEEEEcccccccccccHHHHHHHHHHHHHHccccEEEEEEcccccccccccccEEEEEEccccccccccc
ccccccccEEEEEccccEEEEEccccccccccccEEEcccccccEccccccccccccccccccEEEEEEEEEEEccccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcHHHHHHHccccccccccccccccccccccEEEEEEEEEccccccccccHHHHcccHHHHHHcccEEEEEEcccccHHHHHccccEEEEEEccccccccccc
MASIRSLSFMVETKADSYVVLFsknqyrpsssfsafrpkkspifaflnnsvsgfsfrsnksghllkVKHVkatgagfvedesgnepedsLQATIEKSKKVLAMQKQLLQQISERRKLVSSIKSdianseedevsyeerensfsdldftstsssnvvenqngiipsssgdhstaneapklqssaanrgpdaggkesenrlspekesididsskllkgtdtqstwsdelpsflsrtavisspkeerhekdldqvqqidsepiepkteeakppplaganVMNVILVAAecgpwsktgglgdvagALPKALARRGhrvmvvaphygnyaepqdtgirkryrvdrqsfvspsrk
masirslsfmvETKADSYVVLFSKNQYRPSSSFSAFRPKKSPIFAFLNNSVSGFSFRSNKSGHLLKVKHVKATgagfvedesgnepEDSLQATIEKSKKVLAMQKQLLQQISErrklvssiksdianseedevsyEERENSFSDLDFTSTSSSNVVENQNGIIPSSSGDHSTANEAPKLQssaanrgpdaggkesenrlspekesididsskllkgtdtqstwsdelpsflsrtavisspkeerhekdldqvqqidsepiepkteeakppplAGANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVvaphygnyaepqdtgirkryrvdrqsfvspsrk
MASIRSLSFMVETKADSYVVLFSKNQYRPSSSFSAFRPKKSPIFAFLNNSVSGFSFRSNKSGHLLKVKHVKATGAGFVEDESGNEPEDSLQATIEKSKKVLAMQKQLLQQISERRKLVSSIKSDIANseedevsyeerensfsdldftstsssnVVENQNGIIPSSSGDHSTANEAPKLQSSAANRGPDAGGKESENRLSPEKESIDIDSSKLLKGTDTQSTWSDELPSFLSRTAVISSPKEERHEKDLDQVQQIDSEPIEPKTEEAKPPPLAGANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQSFVSPSRK
********FMVETKADSYVVLFSKN****************PIFAFLNNSVSGFSFRSNKSGHLLKVKHVKAT********************************************************************************************************************************************************************************************************GANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAE***********************
******L****ETKADSYV*************************AFLNNSVSGFSFRSNK******************************QATIEKSKKVLA********************************************************************************************************************************************************************************NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQSFVS****
MASIRSLSFMVETKADSYVVLFSKNQYRPSSSFSAFRPKKSPIFAFLNNSVSGFSFRSNKSGHLLKVKHVKATGAGFVE**********LQATIEKSKKVLAMQKQLLQQISERRKLVSSIKS*******************SDLDFTSTSSSNVVENQNGIIPS****************************************IDIDSSKLLKGTDTQSTWSDELPSFLSRTAVIS*************VQQIDSEPIEPKTEEAKPPPLAGANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVD**********
***IRSLSFMVETKADSYVVLFSKNQYRPSSSFSAFRPKKSPIFAFLNNSVSGFSFRSNKSGHLLKVKHVKATGAG*********PEDSLQATIEKSKKVLAMQKQLLQQISERRKLVSSIK****************************************************************************************************************************************************PLAGANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQS*******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MASIRSLSFMVETKADSYVVLFSKNQYRPSSSFSAFRPKKSPIFAFLNNSVSGFSFRSNKSGHLLKVKHVKATGAGFVEDESGNEPEDSLQATIEKSKKVLAMQKQLLQQISERRKLVSSIKSDIANSEEDEVSYEERENSFSDLDFTSTSSSNVVENQNGIIPSSSGDHSTANEAPKLQSSAANRGPDAGGKESENRLSPEKESIDIDSSKLLKGTDTQSTWSDELPSFLSRTAVISSPKEERHEKDLDQVQQIDSEPIEPKTEEAKPPPLAGANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQSFVSPSRK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query349 2.2.26 [Sep-21-2011]
Q43847 767 Granule-bound starch synt N/A no 0.865 0.393 0.412 2e-55
Q9MAC8 792 Starch synthase 2, chloro yes no 0.802 0.353 0.427 1e-52
Q43093 752 Granule-bound starch synt N/A no 0.762 0.353 0.462 2e-50
Q0DDE3 810 Soluble starch synthase 2 yes no 0.209 0.090 0.780 6e-28
P0C586 810 Soluble starch synthase 2 N/A no 0.209 0.090 0.780 6e-28
Q6Z2T8 694 Soluble starch synthase 2 no no 0.223 0.112 0.717 2e-26
Q7XE48 749 Soluble starch synthase 2 no no 0.272 0.126 0.577 7e-25
Q9FNF2 652 Starch synthase 1, chloro no no 0.260 0.139 0.432 3e-13
P93568 641 Soluble starch synthase 1 N/A no 0.217 0.118 0.482 9e-13
A7H6L1 475 Glycogen synthase OS=Anae yes no 0.169 0.124 0.583 3e-12
>sp|Q43847|SSY2_SOLTU Granule-bound starch synthase 2, chloroplastic/amyloplastic OS=Solanum tuberosum GN=SS2 PE=1 SV=3 Back     alignment and function desciption
 Score =  216 bits (551), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 147/356 (41%), Positives = 195/356 (54%), Gaps = 54/356 (15%)

Query: 19  VVLFSKNQYRPSSSFSAFRPKKSPIFAFLNNSVSGFSFRSNKSGHLLKVKHVKATGAGFV 78
           ++L S NQ+ P+    A RPKK  +               +    + ++K VKATG    
Sbjct: 5   ILLHSGNQFHPNLPLLALRPKKLSLI------------HGSSREQMWRIKRVKATGENSG 52

Query: 79  EDESGNEPEDSLQATIEKSKKVLAMQKQLLQQISERRKLVSSIKSDIANSEEDEVSYEER 138
           E  S +E  D+LQ TIEKSKKVLAMQ+ LLQQI+ERRK+VSSIKS +AN++    +Y+  
Sbjct: 53  EAASADESNDALQVTIEKSKKVLAMQQDLLQQIAERRKVVSSIKSSLANAKG---TYDGG 109

Query: 139 ENSFSDLDFT-----------STSSSNVVENQNGIIPSSSGD---------HSTANE-AP 177
             S SD+D             ST+++ + +      P+ S D            A+E AP
Sbjct: 110 SGSLSDVDIPDVDKDYNVTVPSTAATPITDVDKNTPPAISQDFVESKREIKRDLADERAP 169

Query: 178 KLQSSAANRGPDAGGKESENRL---------SPEKESIDIDSSKLL---KGTDTQSTWSD 225
            L  S+           S  R          S ++  +D++S K L    G   QS    
Sbjct: 170 PLSRSSITASSQISSTVSSKRTLNVPPETPKSSQETLLDVNSRKSLVDVPGKKIQSY--- 226

Query: 226 ELPSFLSRTAVISSPKEERHEKDLDQVQQIDSEPIEPKTEEAKPPPLAGANVMNVILVAA 285
            +PS    ++  +S  E+R+E       + + E  +P   + KPPPLAG NVMN+ILVA+
Sbjct: 227 -MPSLRKESS--ASHVEQRNENLEGSSAEANEETEDPVNIDEKPPPLAGTNVMNIILVAS 283

Query: 286 ECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQ 341
           EC PWSKTGGLGDVAGALPKALARRGHRVMVVAP Y NY EPQD+G+RK Y+VD Q
Sbjct: 284 ECAPWSKTGGLGDVAGALPKALARRGHRVMVVAPRYDNYPEPQDSGVRKIYKVDGQ 339
Accounts for only 10 to 15% of the total soluble starch synthase activity in tubers.
Solanum tuberosum (taxid: 4113)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 2EC: 1
>sp|Q9MAC8|SSY2_ARATH Starch synthase 2, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=SS2 PE=2 SV=1 Back     alignment and function description
>sp|Q43093|SSG2_PEA Granule-bound starch synthase 2, chloroplastic/amyloplastic OS=Pisum sativum PE=1 SV=1 Back     alignment and function description
>sp|Q0DDE3|SSY23_ORYSJ Soluble starch synthase 2-3, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SSII-3 PE=1 SV=1 Back     alignment and function description
>sp|P0C586|SSY23_ORYSI Soluble starch synthase 2-3, chloroplastic/amyloplastic OS=Oryza sativa subsp. indica GN=SSII-3 PE=1 SV=1 Back     alignment and function description
>sp|Q6Z2T8|SSY22_ORYSJ Soluble starch synthase 2-2, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SSII-2 PE=2 SV=2 Back     alignment and function description
>sp|Q7XE48|SSY21_ORYSJ Soluble starch synthase 2-1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SSII-1 PE=2 SV=2 Back     alignment and function description
>sp|Q9FNF2|SSY1_ARATH Starch synthase 1, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=SS1 PE=2 SV=1 Back     alignment and function description
>sp|P93568|SSY1_SOLTU Soluble starch synthase 1, chloroplastic/amyloplastic OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function description
>sp|A7H6L1|GLGA_ANADF Glycogen synthase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=glgA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query349
225452843 772 PREDICTED: granule-bound starch synthase 0.962 0.435 0.524 8e-88
296082929 788 unnamed protein product [Vitis vinifera] 0.962 0.426 0.485 2e-83
6467503 751 granule bound starch synthase II precurs 0.928 0.431 0.534 1e-80
157169069 751 starch synthase isoform II [Manihot escu 0.928 0.431 0.534 2e-80
224141401 742 predicted protein [Populus trichocarpa] 0.896 0.421 0.540 6e-76
255582123 754 starch synthase, putative [Ricinus commu 0.931 0.431 0.494 3e-71
449459534397 PREDICTED: starch synthase 2, chloroplas 0.942 0.828 0.384 9e-55
297828626 796 hypothetical protein ARALYDRAFT_477411 [ 0.810 0.355 0.461 1e-54
351725391 774 starch synthase IIa-2 [Glycine max] gi|2 0.962 0.434 0.435 4e-54
449524102 816 PREDICTED: starch synthase 2, chloroplas 0.939 0.401 0.390 6e-54
>gi|225452843|ref|XP_002278470.1| PREDICTED: granule-bound starch synthase 2, chloroplastic/amyloplastic-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  330 bits (845), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 183/349 (52%), Positives = 235/349 (67%), Gaps = 13/349 (3%)

Query: 1   MASIRSLSFMVETKADSYVVLFSKNQYRPSSSFSAFRPKKSPIFAFLNNSVSGFS----- 55
           MAS+  +SF+ E  A     ++S    RP  SF  +R + SP  A   +S+ G+S     
Sbjct: 1   MASVGCVSFVTERAAS----IWSGRDRRPRFSFPVYRLRMSPGCAISKDSIFGYSREDCV 56

Query: 56  -FRSNKSGHLLKVKHVKATGAGFVEDESGNEPEDSLQATIEKSKKVLAMQKQLLQQISER 114
            F       +L  + V+A G G VE E G+  ED+  ATIEKSKKVLAMQ+ LLQQI+ER
Sbjct: 57  RFSLCSRRQVLGSRGVRARGEGSVEGEDGDRLEDAFDATIEKSKKVLAMQRDLLQQIAER 116

Query: 115 RKLVSSIKSDIANSEEDEVSYEERENSFSDLDFTSTSSSNVVENQNGIIPSSSGDHSTAN 174
           RKLVSSIKS I N E++EVSY+ R++SF ++D TST  S   E+ NG I S +  HS A+
Sbjct: 117 RKLVSSIKSSIINPEDNEVSYKGRDSSFPNMDLTSTGDSGGDEDYNGGILSGNYVHSNAD 176

Query: 175 EAPKLQSSAANRGPDAGGKESENRLSPEKESIDIDSSKLLKGTDTQSTWSDELPSFLSRT 234
           + P   SSA +RG   G KE    LS E  S+D+++ K LK T  ++ WSD LPSFLS++
Sbjct: 177 KVPAALSSATSRGFGEGEKELGKDLSLENPSLDLEAPKQLKDTSPKTVWSDPLPSFLSKS 236

Query: 235 AVISSPKEERHEKDLDQV--QQIDSEPIEPKTEEAKPPPLAGANVMNVILVAAECGPWSK 292
              +SPKEE+ E D  ++  +++++E      E+ KPPPLAG NVMN+ILVAAEC PWSK
Sbjct: 237 VETASPKEEKQE-DFRELSSEEVNNEAAVSMGEDVKPPPLAGTNVMNIILVAAECAPWSK 295

Query: 293 TGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQ 341
           TGGLGDVAGALPKALARRGHRVMVVAP YGNYAE Q+TG+RK+Y+VD Q
Sbjct: 296 TGGLGDVAGALPKALARRGHRVMVVAPRYGNYAEAQETGVRKKYKVDGQ 344

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296082929|emb|CBI22230.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|6467503|gb|AAF13168.1|AF173900_1 granule bound starch synthase II precursor [Manihot esculenta] Back     alignment and taxonomy information
>gi|157169069|gb|ABV25894.1| starch synthase isoform II [Manihot esculenta] Back     alignment and taxonomy information
>gi|224141401|ref|XP_002324061.1| predicted protein [Populus trichocarpa] gi|222867063|gb|EEF04194.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255582123|ref|XP_002531856.1| starch synthase, putative [Ricinus communis] gi|223528506|gb|EEF30534.1| starch synthase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449459534|ref|XP_004147501.1| PREDICTED: starch synthase 2, chloroplastic/amyloplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297828626|ref|XP_002882195.1| hypothetical protein ARALYDRAFT_477411 [Arabidopsis lyrata subsp. lyrata] gi|297328035|gb|EFH58454.1| hypothetical protein ARALYDRAFT_477411 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|351725391|ref|NP_001235811.1| starch synthase IIa-2 [Glycine max] gi|221063672|gb|ACL98480.1| starch synthase IIa-2 precursor [Glycine max] Back     alignment and taxonomy information
>gi|449524102|ref|XP_004169062.1| PREDICTED: starch synthase 2, chloroplastic/amyloplastic-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query349
TAIR|locus:2102102 792 SS2 "starch synthase 2" [Arabi 0.495 0.218 0.516 1.8e-36
UNIPROTKB|Q42968 609 WAXY "Granule-bound starch syn 0.189 0.108 0.558 3.7e-12
TAIR|locus:2037950 610 GBSS1 "granule bound starch sy 0.257 0.147 0.437 3.7e-12
TAIR|locus:2169749 652 SS1 "starch synthase 1" [Arabi 0.260 0.139 0.461 4.5e-11
UNIPROTKB|Q9XHN9113 Q9XHN9 "Granule bound starch s 0.097 0.300 0.685 6.8e-07
TIGR_CMR|GSU_1023 501 GSU_1023 "glycogen synthase" [ 0.160 0.111 0.456 2.9e-06
TIGR_CMR|GSU_3257 484 GSU_3257 "glycogen synthase" [ 0.160 0.115 0.473 7.6e-06
TIGR_CMR|BA_5120 476 BA_5120 "glycogen synthase" [B 0.126 0.092 0.5 7.5e-05
TAIR|locus:2102102 SS2 "starch synthase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 401 (146.2 bits), Expect = 1.8e-36, P = 1.8e-36
 Identities = 92/178 (51%), Positives = 109/178 (61%)

Query:   164 PSSSGDHSTANEAPKLQSSAANRGPDAGGKESENRLSPEKESIDIDSSKLLKGTDTQSTW 223
             P    D +T N  P   SS      D   K S    SPEK S  + S      +   + W
Sbjct:   192 PQKPSDVAT-NGKP--WSSVVASSVDPPYKPSSVMTSPEKTSDPVTSPGKPSKSRAGAFW 248

Query:   224 SDELPSFLSRTAVISSPKEERHEKDLDQVQQIDSEPIEPKTEEAKPPPLAGANVMNVILV 283
             SD LPS+L++    S+ K E++ +    V    SE  EP  +E KPPPLAGANVMNVILV
Sbjct:   249 SDPLPSYLTKAPQTSTMKTEKYVEKTPDVAS--SETNEPGKDEEKPPPLAGANVMNVILV 306

Query:   284 AAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQ 341
             AAEC P+SKTGGLGDVAGALPK+LARRGHRVMVV P Y  YAE +D G+RKRY+V  Q
Sbjct:   307 AAECAPFSKTGGLGDVAGALPKSLARRGHRVMVVVPRYAEYAEAKDLGVRKRYKVAGQ 364
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS
GO:0009011 "starch synthase activity" evidence=IMP
GO:0010021 "amylopectin biosynthetic process" evidence=IMP
GO:0001666 "response to hypoxia" evidence=RCA
GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA
GO:0019375 "galactolipid biosynthetic process" evidence=RCA
UNIPROTKB|Q42968 WAXY "Granule-bound starch synthase 1, chloroplastic/amyloplastic" [Oryza glaberrima (taxid:4538)] Back     alignment and assigned GO terms
TAIR|locus:2037950 GBSS1 "granule bound starch synthase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169749 SS1 "starch synthase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9XHN9 Q9XHN9 "Granule bound starch synthase" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1023 GSU_1023 "glycogen synthase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_3257 GSU_3257 "glycogen synthase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|BA_5120 BA_5120 "glycogen synthase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.4.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.XVII.1126.1
hypothetical protein (688 aa)
(Populus trichocarpa)
Predicted Functional Partners:
fgenesh4_pm.C_LG_XIV000240
glucose-1-phosphate adenylyltransferase (EC-2.7.7.27); This protein plays a role in synthesis o [...] (445 aa)
• •  •• 0.952
gw1.V.1420.1
glucose-1-phosphate adenylyltransferase (EC-2.7.7.27); This protein plays a role in synthesis o [...] (475 aa)
• •  •• 0.950
eugene3.00141188
RecName- Full=Glucose-1-phosphate adenylyltransferase; EC=2.7.7.27;; This protein plays a role [...] (523 aa)
• •  •• 0.948
gw1.170.63.1
glucose-1-phosphate adenylyltransferase (EC-2.7.7.27) (428 aa)
• •  •• 0.946
gw1.VII.320.1
glucose-1-phosphate adenylyltransferase (EC-2.7.7.27) (434 aa)
• •  •• 0.945
estExt_fgenesh4_pm.C_LG_II0158
glucose-1-phosphate adenylyltransferase (EC-2.7.7.27); This protein plays a role in synthesis o [...] (528 aa)
• •  •• 0.945
estExt_Genewise1_v1.C_LG_VIII1252
glucose-1-phosphate adenylyltransferase (EC-2.7.7.27); This protein plays a role in synthesis o [...] (528 aa)
• •  •• 0.945
fgenesh4_pg.C_LG_IV001321
glucose-1-phosphate adenylyltransferase (EC-2.7.7.27); This protein plays a role in synthesis o [...] (526 aa)
• •  •• 0.943
estExt_Genewise1_v1.C_LG_IX1717
glucose-1-phosphate adenylyltransferase (EC-2.7.7.27); This protein plays a role in synthesis o [...] (527 aa)
• •  •• 0.943
estExt_fgenesh4_pg.C_LG_IX1158
hypothetical protein; Phosphorylase is an important allosteric enzyme in carbohydrate metabolis [...] (853 aa)
• •  •• 0.942

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query349
cd03791 476 cd03791, GT1_Glycogen_synthase_DULL1_like, This fa 6e-22
TIGR02095 473 TIGR02095, glgA, glycogen/starch synthase, ADP-glu 7e-21
pfam08323 234 pfam08323, Glyco_transf_5, Starch synthase catalyt 8e-21
PRK00654 466 PRK00654, glgA, glycogen synthase; Provisional 9e-17
COG0297 487 COG0297, GlgA, Glycogen synthase [Carbohydrate tra 4e-15
PLN02939 977 PLN02939, PLN02939, transferase, transferring glyc 1e-06
PRK14099 485 PRK14099, PRK14099, glycogen synthase; Provisional 8e-06
PLN02316 1036 PLN02316, PLN02316, synthase/transferase 2e-05
pfam13579 158 pfam13579, Glyco_trans_4_4, Glycosyl transferase 4 0.004
>gnl|CDD|99965 cd03791, GT1_Glycogen_synthase_DULL1_like, This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information 
 Score = 96.1 bits (240), Expect = 6e-22
 Identities = 28/58 (48%), Positives = 36/58 (62%)

Query: 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRY 336
            V+ VA+E  P++KTGGLGDV GALPKALA+ GH V V+ P YG   +     +    
Sbjct: 1   KVLFVASEVAPFAKTGGLGDVVGALPKALAKLGHDVRVIMPKYGRILDELRGQLLVLR 58

Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. Length = 476
>gnl|CDD|233724 TIGR02095, glgA, glycogen/starch synthase, ADP-glucose type Back     alignment and domain information
>gnl|CDD|219794 pfam08323, Glyco_transf_5, Starch synthase catalytic domain Back     alignment and domain information
>gnl|CDD|234809 PRK00654, glgA, glycogen synthase; Provisional Back     alignment and domain information
>gnl|CDD|223374 COG0297, GlgA, Glycogen synthase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups Back     alignment and domain information
>gnl|CDD|237610 PRK14099, PRK14099, glycogen synthase; Provisional Back     alignment and domain information
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase Back     alignment and domain information
>gnl|CDD|222237 pfam13579, Glyco_trans_4_4, Glycosyl transferase 4-like domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 349
PRK14099 485 glycogen synthase; Provisional 99.66
PRK14098 489 glycogen synthase; Provisional 99.65
TIGR02095 473 glgA glycogen/starch synthases, ADP-glucose type. 99.53
PF08323 245 Glyco_transf_5: Starch synthase catalytic domain; 99.51
PLN02939 977 transferase, transferring glycosyl groups 99.5
PLN02316 1036 synthase/transferase 99.43
cd03791 476 GT1_Glycogen_synthase_DULL1_like This family is mo 99.39
PRK00654 466 glgA glycogen synthase; Provisional 99.39
COG0297 487 GlgA Glycogen synthase [Carbohydrate transport and 99.19
cd03802 335 GT1_AviGT4_like This family is most closely relate 96.41
PLN02871 465 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase 96.18
PRK10307 412 putative glycosyl transferase; Provisional 96.02
cd03805 392 GT1_ALG2_like This family is most closely related 95.74
cd03794 394 GT1_wbuB_like This family is most closely related 94.99
PLN02846 462 digalactosyldiacylglycerol synthase 94.72
cd03801 374 GT1_YqgM_like This family is most closely related 94.6
cd03817 374 GT1_UGDG_like This family is most closely related 94.4
PF13579 160 Glyco_trans_4_4: Glycosyl transferase 4-like domai 94.18
cd03814 364 GT1_like_2 This family is most closely related to 93.94
cd03821 375 GT1_Bme6_like This family is most closely related 93.63
cd03795 357 GT1_like_4 This family is most closely related to 93.51
cd03809 365 GT1_mtfB_like This family is most closely related 93.42
cd03796 398 GT1_PIG-A_like This family is most closely related 93.38
cd03820 348 GT1_amsD_like This family is most closely related 93.25
cd03823 359 GT1_ExpE7_like This family is most closely related 93.11
cd04955 363 GT1_like_6 This family is most closely related to 92.84
PF13439 177 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 92.58
cd04962 371 GT1_like_5 This family is most closely related to 92.55
cd03825 365 GT1_wcfI_like This family is most closely related 92.26
cd03807 365 GT1_WbnK_like This family is most closely related 91.59
TIGR03449 405 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-ino 91.22
cd03811 353 GT1_WabH_like This family is most closely related 90.48
TIGR02149 388 glgA_Coryne glycogen synthase, Corynebacterium fam 89.85
cd01635 229 Glycosyltransferase_GTB_type Glycosyltransferases 89.19
cd03808 359 GT1_cap1E_like This family is most closely related 89.17
cd03822 366 GT1_ecORF704_like This family is most closely rela 89.08
cd04951 360 GT1_WbdM_like This family is most closely related 88.09
cd03800 398 GT1_Sucrose_synthase This family is most closely r 87.99
PF03033139 Glyco_transf_28: Glycosyltransferase family 28 N-t 86.65
TIGR01133 348 murG undecaprenyldiphospho-muramoylpentapeptide be 86.6
cd03812 358 GT1_CapH_like This family is most closely related 85.6
PRK13609 380 diacylglycerol glucosyltransferase; Provisional 85.43
PRK09922 359 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D 84.73
cd03792 372 GT1_Trehalose_phosphorylase Trehalose phosphorylas 83.84
cd03784 401 GT1_Gtf_like This family includes the Gtfs, a grou 81.82
PF13477139 Glyco_trans_4_2: Glycosyl transferase 4-like 81.25
PRK10125 405 putative glycosyl transferase; Provisional 80.94
>PRK14099 glycogen synthase; Provisional Back     alignment and domain information 
Probab=99.66  E-value=6.3e-17  Score=160.94  Aligned_cols=52  Identities=44%  Similarity=0.597  Sum_probs=49.7

Q ss_pred             CCCceEEEEecccccccccccHHHHHhHHHHHHHHCCCeEEEEecCCCCCCC
Q 018901          275 ANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAE  326 (349)
Q Consensus       275 ~~~mkILfVSsE~aPfaKtGGLgDVv~sLPkAL~~~G~dVrVimPrYg~i~e  326 (349)
                      |++|||||||+||+||+||||||||+++||++|+++||+|+||||+|++++.
T Consensus         1 ~~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y~~~~~   52 (485)
T PRK14099          1 MTPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGYPAVLA   52 (485)
T ss_pred             CCCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCCcchhh
Confidence            5679999999999999999999999999999999999999999999999963

>PRK14098 glycogen synthase; Provisional Back     alignment and domain information
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type Back     alignment and domain information
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2 Back     alignment and domain information
>PLN02939 transferase, transferring glycosyl groups Back     alignment and domain information
>PLN02316 synthase/transferase Back     alignment and domain information
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PRK00654 glgA glycogen synthase; Provisional Back     alignment and domain information
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase Back     alignment and domain information
>PRK10307 putative glycosyl transferase; Provisional Back     alignment and domain information
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PLN02846 digalactosyldiacylglycerol synthase Back     alignment and domain information
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known Back     alignment and domain information
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A Back     alignment and domain information
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A Back     alignment and domain information
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase Back     alignment and domain information
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family Back     alignment and domain information
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds Back     alignment and domain information
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli Back     alignment and domain information
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase Back     alignment and domain information
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PRK13609 diacylglycerol glucosyltransferase; Provisional Back     alignment and domain information
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional Back     alignment and domain information
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose Back     alignment and domain information
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin Back     alignment and domain information
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like Back     alignment and domain information
>PRK10125 putative glycosyl transferase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query349
3vue_A 536 Crystal Structure Of Rice Granule Bound Starch Synt 2e-08
1rzu_A 485 Crystal Structure Of The Glycogen Synthase From A. 1e-04
1rzv_A 485 Crystal Structure Of The Glycogen Synthase From Agr 7e-04
>pdb|3VUE|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain Length = 536 Back     alignment and structure 
Iteration: 1

 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/64 (56%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYR 337
           MNV+ V AE  PWSKTGGLGDV G LP A+A  GHRVMV++P Y  Y +  DT +    +
Sbjct: 10  MNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIK 69
Query: 338 V-DR 340
           V DR
Sbjct: 70  VADR 73
>pdb|1RZU|A Chain A, Crystal Structure Of The Glycogen Synthase From A. Tumefaciens In Complex With Adp Length = 485 Back     alignment and structure
>pdb|1RZV|A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) Length = 485 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query349
1rzu_A 485 Glycogen synthase 1; glycosyl-transferase, GT-B fo 9e-25
2qzs_A 485 Glycogen synthase; glycosyl-transferase, GT-B fold 5e-24
3fro_A 439 GLGA glycogen synthase; glycosyltransferase family 2e-20
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A Length = 485 Back     alignment and structure
 Score =  103 bits (260), Expect = 9e-25
 Identities = 24/62 (38%), Positives = 30/62 (48%)

Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYR 337
           MNV+ V++E  P  KTGGL DV GALP AL   G R   + P Y          ++    
Sbjct: 1   MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAVTDPVKCFEF 60

Query: 338 VD 339
            D
Sbjct: 61  TD 62
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A Length = 485 Back     alignment and structure
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} PDB: 2bis_A* 3l01_A* Length = 439 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query349
3vue_A 536 GBSS-I, granule-bound starch synthase 1, chloropla 99.67
3fro_A 439 GLGA glycogen synthase; glycosyltransferase family 98.14
2qzs_A 485 Glycogen synthase; glycosyl-transferase, GT-B fold 97.82
1rzu_A 485 Glycogen synthase 1; glycosyl-transferase, GT-B fo 97.81
3c48_A 438 Predicted glycosyltransferases; retaining glycosyl 97.8
2iuy_A 342 Avigt4, glycosyltransferase; antibiotics, family G 97.23
2r60_A 499 Glycosyl transferase, group 1; rossmann-fold; 1.80 96.63
2iw1_A 374 Lipopolysaccharide core biosynthesis protein RFAG; 96.48
2gek_A 406 Phosphatidylinositol mannosyltransferase (PIMA); G 95.85
2x0d_A 413 WSAF; GT4 family, transferase; HET: MSE; 2.28A {Ge 95.77
3okp_A 394 GDP-mannose-dependent alpha-(1-6)-phosphatidylino 95.62
2x6q_A 416 Trehalose-synthase TRET; biosynthetic protein; 2.2 95.59
4amg_A 400 Snogd; transferase, polyketide biosynthesis, GT1 f 94.28
1f0k_A 364 MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pe 93.86
4fzr_A 398 SSFS6; structural genomics, PSI-biology, protein s 92.24
3oy2_A 413 Glycosyltransferase B736L; rossmann fold, GDP-mann 92.1
3otg_A 412 CALG1; calicheamicin, TDP, structural genomics, PS 91.83
3tsa_A 391 SPNG, NDP-rhamnosyltransferase; glycosyltransferas 90.62
3ia7_A 402 CALG4; glycosysltransferase, calicheamicin, enediy 90.17
3rsc_A 415 CALG2; TDP, enediyne, structural genomics, PSI-2, 90.14
3oti_A 398 CALG3; calicheamicin, TDP, structural genomics, PS 88.96
3h4t_A 404 Glycosyltransferase GTFA, glycosyltransferase; van 88.31
2iyf_A 430 OLED, oleandomycin glycosyltransferase; antibiotic 87.82
2p6p_A 384 Glycosyl transferase; X-RAY-diffraction,urdamycina 87.06
2iya_A 424 OLEI, oleandomycin glycosyltransferase; carbohydra 86.41
2hy7_A 406 Glucuronosyltransferase GUMK; glycosyltransferases 85.68
2vsy_A 568 XCC0866; transferase, glycosyl transferase, GT-B, 84.78
1rrv_A 416 Glycosyltransferase GTFD; GT-B, glycosyltransferas 83.4
2jjm_A 394 Glycosyl transferase, group 1 family protein; anth 82.72
2yjn_A 441 ERYCIII, glycosyltransferase; transferase, cytochr 81.0
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A* Back     alignment and structure
Probab=99.67  E-value=6.3e-17  Score=159.89  Aligned_cols=69  Identities=49%  Similarity=0.853  Sum_probs=58.3

Q ss_pred             CCCceEEEEecccccccccccHHHHHhHHHHHHHHCCCeEEEEecCCCCCCCccccCcccEEEECCeeE
Q 018901          275 ANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQSF  343 (349)
Q Consensus       275 ~~~mkILfVSsE~aPfaKtGGLgDVv~sLPkAL~~~G~dVrVimPrYg~i~e~~d~~v~~~~~V~g~~~  343 (349)
                      ...|||||||+||+||+||||||||+++||+||+++||+|+||||.|+++.+..+......+.+.++..
T Consensus         7 ~~~MkIl~vs~E~~P~~K~GGLadvv~~L~~aL~~~G~~V~Vi~P~Y~~~~~~~~~~~~~~~~~~~~~~   75 (536)
T 3vue_A            7 HHHMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPRYDQYKDAWDTSVVAEIKVADRYE   75 (536)
T ss_dssp             -CCCEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCSCCTTCEEEEEEEEEEETTEEE
T ss_pred             CCCcEEEEEEEeccchhccCcHHHHHHHHHHHHHHcCCeEEEEecCchhhhhhcccceEEEEEecCceE
Confidence            566999999999999999999999999999999999999999999999998766555444455554443
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A* Back     alignment and structure
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A Back     alignment and structure
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A Back     alignment and structure
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A* Back     alignment and structure
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A* Back     alignment and structure
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A* Back     alignment and structure
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A* Back     alignment and structure
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A* Back     alignment and structure
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A* Back     alignment and structure
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A* Back     alignment and structure
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A* Back     alignment and structure
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A* Back     alignment and structure
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A* Back     alignment and structure
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A* Back     alignment and structure
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A* Back     alignment and structure
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A* Back     alignment and structure
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A* Back     alignment and structure
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora} Back     alignment and structure
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A* Back     alignment and structure
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A* Back     alignment and structure
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A* Back     alignment and structure
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus} Back     alignment and structure
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae} Back     alignment and structure
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus} Back     alignment and structure
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A* Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Back     alignment and structure
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5 Back     alignment and structure
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A* Back     alignment and structure
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 349
d1rzua_ 477 c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacte 6e-26
d2bisa1 437 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyro 3e-17
d2iw1a1 370 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynt 0.001
>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]} Length = 477 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Glycosyl transferases group 1
domain: Glycogen synthase 1, GlgA
species: Agrobacterium tumefaciens [TaxId: 358]

 Score =  105 bits (263), Expect = 6e-26
 Identities = 24/62 (38%), Positives = 30/62 (48%)

Query: 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYR 337
           MNV+ V++E  P  KTGGL DV GALP AL   G R   + P Y          ++    
Sbjct: 1   MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKAAVTDPVKCFEF 60

Query: 338 VD 339
            D
Sbjct: 61  TD 62
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} Length = 437 Back     information, alignment and structure
>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]} Length = 370 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query349
d1rzua_ 477 Glycogen synthase 1, GlgA {Agrobacterium tumefacie 99.43
d2bisa1 437 Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI 98.95
d2iw1a1 370 Lipopolysaccharide core biosynthesis protein RfaG 96.48
d1rrva_ 401 TDP-vancosaminyltransferase GftD {Amycolatopsis or 93.15
d1iira_ 401 UDP-glucosyltransferase GtfB {Amycolatopsis orient 90.25
d1pn3a_ 391 TDP-epi-vancosaminyltransferase GtfA {Amycolatopsi 89.97
d1jaya_ 212 Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae 86.3
d2f1ka2 165 Prephenate dehydrogenase TyrA {Synechocystis sp. p 80.95
d1ks9a2 167 Ketopantoate reductase PanE {Escherichia coli [Tax 80.31
d2iida1 370 L-aminoacid oxidase {Malayan pit viper (Calloselas 80.3
d2ivda1 347 Protoporphyrinogen oxidase {Myxococcus xanthus [Ta 80.27
>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Glycosyl transferases group 1
domain: Glycogen synthase 1, GlgA
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.43  E-value=1.5e-14  Score=133.89  Aligned_cols=49  Identities=47%  Similarity=0.661  Sum_probs=46.8

Q ss_pred             ceEEEEecccccccccccHHHHHhHHHHHHHHCCCeEEEEecCCCCCCC
Q 018901          278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAE  326 (349)
Q Consensus       278 mkILfVSsE~aPfaKtGGLgDVv~sLPkAL~~~G~dVrVimPrYg~i~e  326 (349)
                      ||||||++|++||+|+||||||+++|+++|+++||+|+||+|+|+++..
T Consensus         1 M~i~~v~~e~~P~~~~GGl~~vv~~La~~L~~~Gh~V~Vi~P~y~~~~~   49 (477)
T d1rzua_           1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGYPAVKA   49 (477)
T ss_dssp             CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECCHHHHH
T ss_pred             CEEEEEEEeeecccccCcHHHHHHHHHHHHHHcCCeEEEEecCCcchhh
Confidence            8999999999999999999999999999999999999999999987644
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rrva_ c.87.1.5 (A:) TDP-vancosaminyltransferase GftD {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} Back     information, alignment and structure
>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Back     information, alignment and structure
>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Back     information, alignment and structure