Citrus Sinensis ID: 018904

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35
Protein Sequence
MEYRKIKDEDNDGGGSSSGDLESLRGKPISVTNVASKSSELANWKRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKLQR
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEHHHHHHHHHHHHHHHHHHHHccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEccccccccccccccHHccccccEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEHHHHHHHHHHHHHHHHHHHHHHcHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
meyrkikdedndgggsssgdleslrgkpisvtnvasksselanwkRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNhegvtddnrlsttldevivyPIPAVLYLVKNLLQYYIFAyvdapgyqilknlNIISTGVLYRIILKKKLSEIQWAAFILLCCGcttaqlnsnsdrvlqtPLQGWIMAIVMALLSGFAGVYTEAIMkkrpsrninvqNFWLYVFGMAFNAVAIVIQDFDavmnkgffhgYSFITVLMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKLQR
Flexible Loop (DISEMBL)
meyrkikdedndgggsssgdleslrgkpisvtnvasksselanwkrkSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHegvtddnrlsttlDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKLQR
Low Complexity Region (SEG)
MEYRKIKdedndgggsssgdleslRGKPISVTNVASKSSELANWKRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKLQR
Disordered region (IsUnstruct)
****************************************LANWKRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLH*******
Disordered Region (DISOPRED)
***********************************************SVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGK***
Disordered Region (DISEMBL)
*********************ESLRGKPISVTNVASKSSELANWKRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKLQR
Disordered Region (DISPRO)
*****************************************ANWKRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAG****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEYRKIKDEDNDGGGSSSGDLESLRGKPISVTNVASKSSELANWKRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKLQR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	349	2.2.26 [Sep-21-2011]
F4JN00	352	CMP-sialic acid transport	yes	no	0.988	0.980	0.850	1e-171
Q8LGE9	340	CMP-sialic acid transport	no	no	0.833	0.855	0.415	2e-54
P78382	337	CMP-sialic acid transport	yes	no	0.822	0.851	0.304	2e-34
O08520	336	CMP-sialic acid transport	no	no	0.822	0.854	0.290	2e-33
Q61420	336	CMP-sialic acid transport	yes	no	0.822	0.854	0.293	4e-33
Q93890	368	UDP-galactose/UDP-N-acety	yes	no	0.908	0.861	0.310	4e-32
Q9R0M8	390	UDP-galactose translocato	no	no	0.627	0.561	0.370	7e-32
P78381	396	UDP-galactose translocato	no	no	0.627	0.553	0.366	1e-31
Q6DCG9	413	Probable UDP-sugar transp	N/A	no	0.828	0.699	0.3	1e-31
Q8WMS0	397	UDP-galactose translocato	no	no	0.627	0.551	0.366	1e-31

>sp|F4JN00|CSTR4_ARATH CMP-sialic acid transporter 4 OS=Arabidopsis thaliana GN=At4g35335 PE=2 SV=1

 Score =  602 bits (1552), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 302/355 (85%), Positives = 316/355 (89%), Gaps = 10/355 (2%)

Query: 1   MEYRKIKDEDNDGGGSSSGDLESLRGKP-------ISVTNVASKSSELANWKRKSVVTLA 53
           MEYRKIKDED+    S   D+ES++GK        I++  +   SSE  NWKRK VVT A
Sbjct: 1   MEYRKIKDEDDHDVAS---DIESVKGKSHTVASSNIAMATLGVGSSERINWKRKGVVTCA 57

Query: 54  LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLS 113
           LT+LTSSQAILIVWSKRAGKYEYSVTTANFLV TLKCALSL AL RIW +EGVTDDNRLS
Sbjct: 58  LTILTSSQAILIVWSKRAGKYEYSVTTANFLVGTLKCALSLLALTRIWKNEGVTDDNRLS 117

Query: 114 TTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSE 173
           TT DEV V+PIPA LYL KNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILK+KLSE
Sbjct: 118 TTFDEVKVFPIPAALYLFKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKRKLSE 177

Query: 174 IQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSR 233
           IQWA FILLCCGCTTAQLNSNSDRVLQT L GW MAIVMALLSGFAGVYTEAI+KKRPSR
Sbjct: 178 IQWAGFILLCCGCTTAQLNSNSDRVLQTSLPGWTMAIVMALLSGFAGVYTEAIIKKRPSR 237

Query: 234 NINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVM 293
           NINVQNFWLYVFGMAFNAVAIVIQDFDAV NKGFFHGYSFIT+LMILNHALSGIAVSMVM
Sbjct: 238 NINVQNFWLYVFGMAFNAVAIVIQDFDAVANKGFFHGYSFITLLMILNHALSGIAVSMVM 297

Query: 294 KYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKLQ 348
           KYADNIVKVYSTSVAMLLTAVVSVFLF FHLSLAFFLGS VVSVSVYLHSAGKL+
Sbjct: 298 KYADNIVKVYSTSVAMLLTAVVSVFLFNFHLSLAFFLGSTVVSVSVYLHSAGKLR 352

Sugar transporter involved in the transport of CMP-sialic acid from the cytoplasm into the Golgi (By similarity). Essential protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8LGE9|CSTR1_ARATH CMP-sialic acid transporter 1 OS=Arabidopsis thaliana GN=At5g41760 PE=2 SV=1

 Score =  213 bits (541), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 127/306 (41%), Positives = 182/306 (59%), Gaps = 15/306 (4%)

Query: 50  VTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDD 109
           V + LT+LTSSQ IL   S+  G Y+Y   T  FL E  K  +S   L   W     +  
Sbjct: 9   VAVLLTILTSSQGILTTLSQSDGGYKYDYATVPFLAEVFKLIISGLFL---WREMRTSSS 65

Query: 110 NRLSTTLD--EVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIIL 167
                T D   V ++ IP+++YL+ N +Q+    YVD   YQI+ NL I++TG+L+R+ L
Sbjct: 66  TTSRITTDWKSVRLFVIPSLIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFRLFL 125

Query: 168 KKKLSEIQWAAFILLCCGCTTAQL----NSNSDRVLQTPLQGWIMAIVMALLSGFAGVYT 223
           K+KLS++QW A  LL  G TT+Q+     ++ D +   P+QG+++ I+ A LS  AG+YT
Sbjct: 126 KRKLSKLQWMAIGLLAVGTTTSQVKGCGEASCDSLFTAPIQGYLLGILSAGLSALAGIYT 185

Query: 224 EAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKG-----FFHGYSFITVLM 278
           E +MK R +  +  QN  LY FG  FN   ++  DF     KG      F GYS  T L+
Sbjct: 186 EFLMK-RNNDTLYWQNLQLYTFGSLFNVARLIADDFRHGFEKGPWWQRIFDGYSITTWLV 244

Query: 279 ILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVS 338
           +LN   +G+ VS +MKYADNIVKVYSTS+AMLLT V S++LF F  +L  FLG ++  +S
Sbjct: 245 VLNLGSTGLLVSWLMKYADNIVKVYSTSMAMLLTMVASIYLFSFKPTLQLFLGIVICIMS 304

Query: 339 VYLHSA 344
           ++++ A
Sbjct: 305 LHMYFA 310

Essential protein. Sugar transporter involved in the transport of CMP-sialic acid from the cytoplasm into the Golgi.

Arabidopsis thaliana (taxid: 3702)

>sp|P78382|S35A1_HUMAN CMP-sialic acid transporter OS=Homo sapiens GN=SLC35A1 PE=2 SV=1

 Score =  146 bits (369), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 90/296 (30%), Positives = 168/296 (56%), Gaps = 9/296 (3%)

Query: 54  LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALAR----IWNHEGVTDD 109
           +T++ +   I + +++ + K  Y  TTA  + E +K  LS+  LA+    +   +    +
Sbjct: 20  MTLMAAVYTIALRYTRTSDKELYFSTTAVCITEVIKLLLSVGILAKETGSLGRFKASLRE 79

Query: 110 NRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKK 169
           N L +   E++   +P+++Y V+N + +   + +DA  YQ+   L I  T +   ++L +
Sbjct: 80  NVLGSP-KELLKLSVPSLVYAVQNNMAFLALSNLDAAVYQVTYQLKIPCTALCTVLMLNR 138

Query: 170 KLSEIQWAAFILLCCGCTTAQLN-SNSDRVL--QTPLQGWIMAIVMALLSGFAGVYTEAI 226
            LS++QW +  +LC G T  Q   + + +V+  Q PL G+    +  L SGFAGVY E +
Sbjct: 139 TLSKLQWVSVFMLCAGVTLVQWKPAQATKVVVEQNPLLGFGAIAIAVLCSGFAGVYFEKV 198

Query: 227 MKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSG 286
           +K   + ++ V+N  +Y+ G+      + + D   +  KGFF+GY++    +I   ++ G
Sbjct: 199 LKSSDT-SLWVRNIQMYLSGIIVTLAGVYLSDGAEIKEKGFFYGYTYYVWFVIFLASVGG 257

Query: 287 IAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLH 342
           +  S+V+KY DNI+K +S + A++L+ + SV LFG  ++L F LG+++V VS+YL+
Sbjct: 258 LYTSVVVKYTDNIMKGFSAAAAIVLSTIASVMLFGLQITLTFALGTLLVCVSIYLY 313

Transports CMP-sialic acid from the cytosol into Golgi vesicles where glycosyltransferases function.

Homo sapiens (taxid: 9606)

>sp|O08520|S35A1_CRIGR CMP-sialic acid transporter OS=Cricetulus griseus GN=SLC35A1 PE=2 SV=1

 Score =  143 bits (360), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 169/296 (57%), Gaps = 9/296 (3%)

Query: 54  LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALAR----IWNHEGVTDD 109
           +T++ ++  + + +++   K  Y  TTA  + E +K  +S+  LA+    +   +    +
Sbjct: 20  MTLVAAAYTVALRYTRTTAKELYFSTTAVCVTEVIKLLISVGLLAKETGSLGRFKASLSE 79

Query: 110 NRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKK 169
           N L +   E++   +P+++Y V+N + +   + +DA  YQ+   L I  T +   ++L +
Sbjct: 80  NVLGSP-KELMKLSVPSLVYAVQNNMAFLALSNLDAAVYQVTYQLKIPCTALCTVLMLNR 138

Query: 170 KLSEIQWAAFILLCCGCTTAQLN-SNSDRVL--QTPLQGWIMAIVMALLSGFAGVYTEAI 226
            LS++QW +  +LC G    Q   + + +V+  Q+PL G+    +  L SGFAGVY E +
Sbjct: 139 TLSKLQWVSVFMLCGGVILVQWKPAQATKVVVEQSPLLGFGAIAIAVLCSGFAGVYFEKV 198

Query: 227 MKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSG 286
           +K   + ++ V+N  +Y+ G+    V   + D   +  KGFF+GY++    +I   ++ G
Sbjct: 199 LKSSDT-SLWVRNIQMYLSGIVVTLVGTYLSDGAEIKEKGFFYGYTYYVWFVIFLASVGG 257

Query: 287 IAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLH 342
           +  S+V+KY DNI+K +S + A++L+ + SV LFG  ++L+F +G+++V +S+YL+
Sbjct: 258 LYTSVVVKYTDNIMKGFSAAAAIVLSTIASVMLFGLQITLSFAMGALLVCISIYLY 313

Transports CMP-sialic acid from the cytosol into Golgi vesicles where glycosyltransferases function.

Cricetulus griseus (taxid: 10029)

>sp|Q61420|S35A1_MOUSE CMP-sialic acid transporter OS=Mus musculus GN=Slc35a1 PE=1 SV=2

 Score =  142 bits (358), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 87/296 (29%), Positives = 164/296 (55%), Gaps = 9/296 (3%)

Query: 54  LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALAR----IWNHEGVTDD 109
           +T++ ++  + + +++   +  Y  TTA  + E +K  +S+  LA+    +   +    +
Sbjct: 20  MTLVAAAYTVALRYTRTTAEELYFSTTAVCITEVIKLLISVGLLAKETGSLGRFKASLSE 79

Query: 110 NRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKK 169
           N L +   E+    +P+++Y V+N + +   + +DA  YQ+   L I  T +   ++L +
Sbjct: 80  NVLGSP-KELAKLSVPSLVYAVQNNMAFLALSNLDAAVYQVTYQLKIPCTALCTVLMLNR 138

Query: 170 KLSEIQWAAFILLCCGCTTAQ---LNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAI 226
            LS++QW +  +LC G T  Q     +    V Q PL G+    +  L SGFAGVY E +
Sbjct: 139 TLSKLQWISVFMLCGGVTLVQWKPAQATKVVVAQNPLLGFGAIAIAVLCSGFAGVYFEKV 198

Query: 227 MKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSG 286
           +K   + ++ V+N  +Y+ G+        + D   +  KGFF+GY++    +I   ++ G
Sbjct: 199 LKSSDT-SLWVRNIQMYLSGIVVTLAGTYLSDGAEIQEKGFFYGYTYYVWFVIFLASVGG 257

Query: 287 IAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLH 342
           +  S+V+KY DNI+K +S + A++L+ + SV LFG  ++L+F LG+++V VS+YL+
Sbjct: 258 LYTSVVVKYTDNIMKGFSAAAAIVLSTIASVLLFGLQITLSFALGALLVCVSIYLY 313

Transport CMP-sialic acid from the cytosol into Golgi vesicles where glycosyltransferases function.

Mus musculus (taxid: 10090)

>sp|Q93890|SRF3_CAEEL UDP-galactose/UDP-N-acetylglucosamine transporter srf-3 OS=Caenorhabditis elegans GN=srf-3 PE=1 SV=5

 Score =  139 bits (349), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 101/325 (31%), Positives = 176/325 (54%), Gaps = 8/325 (2%)

Query: 28  PISVTNVASKSSELANWKRKSVVTLALTVLTSSQAILIVWSK-RAGKYEYSVTTANFLVE 86
           P+ + +V  +SS+ +    K+ + + LT+  S   +LI +S+ R     +  T A +L E
Sbjct: 24  PVPLVSVGRESSQ-SKGNMKTAILIWLTLQNSIHTLLIRYSRAREVDAMFVSTVAVWLTE 82

Query: 87  TLKCALSLAALARIWNHEGVTDDNR---LSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYV 143
            +KC + L  +A+           R   L    D + V  IPA++Y+V+N L Y   +++
Sbjct: 83  VIKCFICLFLVAQEETPRRFIHALRTQILEQPYDTLKVC-IPAMIYIVQNNLFYVAASHL 141

Query: 144 DAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVL--QT 201
           DA  + I   L I +  +   IIL++ L+  QW A  +L  G +  QL     +    ++
Sbjct: 142 DAATFMITSQLKIFTAAIFTVIILRRSLNRTQWFALAVLFVGVSLVQLQGTKAKESSGES 201

Query: 202 PLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDA 261
           P  G++  +V   LSGFAG+Y E I+K     ++ ++N  + VF +  +  AI +QD   
Sbjct: 202 PFVGFVAVVVACCLSGFAGIYFEKILKGSAPVSLWMRNVQMAVFSIPASFSAIYMQDSKT 261

Query: 262 VMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFG 321
           V   G  +G+  I  L +L + + G++V++ +KYADNI K ++TSVA++L+ + S+FLF 
Sbjct: 262 VNEYGLLYGFDSIVWLTVLWYGVGGLSVAVCIKYADNIAKNFATSVAIILSTIGSIFLFD 321

Query: 322 FHLSLAFFLGSIVVSVSVYLHSAGK 346
           F  S  F LG+ +V  S++L+S+ +
Sbjct: 322 FIPSFTFLLGASLVIFSIFLYSSHQ 346

Acts as a transporter of both UDP-galactose and UDP-N-acetylglucosamine into the Golgi lumen.

Caenorhabditis elegans (taxid: 6239)

>sp|Q9R0M8|S35A2_MOUSE UDP-galactose translocator OS=Mus musculus GN=Slc35a2 PE=2 SV=1

 Score =  138 bits (347), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 83/224 (37%), Positives = 134/224 (59%), Gaps = 5/224 (2%)

Query: 124 IPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLC 183
           +P+++Y ++N LQY   + + A  +Q+   L I++T +   ++L + LS +QWA+ +LL 
Sbjct: 117 VPSLIYTLQNNLQYVAISNLPAATFQVTYQLKILTTALFSVLMLNRSLSRLQWASLLLLF 176

Query: 184 CGCT---TAQLNSNSDRVL-QTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQN 239
            G       Q   +  R L Q P  G    +   L SGFAGVY E I+K   S ++ ++N
Sbjct: 177 TGVAIVQAQQAGGSGPRPLDQNPGAGLAAVVASCLSSGFAGVYFEKILKGS-SGSVWLRN 235

Query: 240 FWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYADNI 299
             L +FG A   V +   +  AV ++GFF GY+     ++LN A  G+ V++V+KYADNI
Sbjct: 236 LQLGLFGTALGLVGLWWAEGTAVASQGFFFGYTPAVWGVVLNQAFGGLLVAVVVKYADNI 295

Query: 300 VKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHS 343
           +K ++TS++++L+ V S+ LFGFHL   F LG+ +V  +VYL+S
Sbjct: 296 LKGFATSLSIVLSTVASIRLFGFHLDPLFALGAGLVIGAVYLYS 339

Transports nucleotide sugars from the cytosol into Golgi vesicles where glycosyltransferases function.

Mus musculus (taxid: 10090)

>sp|P78381|S35A2_HUMAN UDP-galactose translocator OS=Homo sapiens GN=SLC35A2 PE=2 SV=1

 Score =  137 bits (346), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 132/224 (58%), Gaps = 5/224 (2%)

Query: 124 IPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLC 183
           +P+++Y ++N LQY   + + A  +Q+   L I++T +   ++L + LS +QWA+ +LL 
Sbjct: 117 VPSLIYTLQNNLQYVAISNLPAATFQVTYQLKILTTALFSVLMLNRSLSRLQWASLLLLF 176

Query: 184 CGCT---TAQLNSNSDRVL-QTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQN 239
            G       Q      R L Q P  G    +   L SGFAGVY E I+K   S ++ ++N
Sbjct: 177 TGVAIVQAQQAGGGGPRPLDQNPGAGLAAVVASCLSSGFAGVYFEKILKGS-SGSVWLRN 235

Query: 240 FWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYADNI 299
             L +FG A   V +   +  AV  +GFF GY+     ++LN A  G+ V++V+KYADNI
Sbjct: 236 LQLGLFGTALGLVGLWWAEGTAVATRGFFFGYTPAVWGVVLNQAFGGLLVAVVVKYADNI 295

Query: 300 VKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHS 343
           +K ++TS++++L+ V S+ LFGFH+   F LG+ +V  +VYL+S
Sbjct: 296 LKGFATSLSIVLSTVASIRLFGFHVDPLFALGAGLVIGAVYLYS 339

Transports nucleotide sugars from the cytosol into Golgi vesicles where glycosyltransferases function.

Homo sapiens (taxid: 9606)

>sp|Q6DCG9|S35A5_XENLA Probable UDP-sugar transporter protein SLC35A5 OS=Xenopus laevis GN=slc35a5 PE=2 SV=1

 Score =  137 bits (346), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 102/340 (30%), Positives = 170/340 (50%), Gaps = 51/340 (15%)

Query: 57  LTSSQAILIVWS-KRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTT 115
           L SS+ +L+ +S     KY+Y   T N   E +K    +A   RI   E      R   +
Sbjct: 29  LGSSRLLLVKFSANEDNKYDYVPATVNVCAEAVKLLFCMAMSVRIIMTE--RRSFRCHAS 86

Query: 116 LDEVIVY---PIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLS 172
           L     Y    +PA LY + NL+ +Y+ AY+      +L N  II+T V +R+ILK++LS
Sbjct: 87  LKHFCQYMKWAVPAFLYFLDNLIIFYVLAYLQPAMAVLLSNFVIITTAVFFRLILKRQLS 146

Query: 173 EIQWAAFILL---CCGCT----TAQLN--------------SNSDRVLQTP--------- 202
            +QWA+ ++L     G T    TA                 SNS   L  P         
Sbjct: 147 CVQWASLVILFLSIMGLTSRNDTAHHEVSVDVHHHLFHSAPSNSCTYLNKPDTEAHTVSL 206

Query: 203 -----LQ------GWIMAIVMALLSGFAGVYTEAIMKK--RPSRNINVQNFWLYVFGMAF 249
                 Q      G  + ++  ++S  A +Y E I+K+  + S +I +QN  LYVFG+ F
Sbjct: 207 KAIANFQFLHLGLGHFLILLQCVISALANIYNEKILKEGEQMSESIFIQNSKLYVFGVFF 266

Query: 250 NAVAIVIQD--FDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYADNIVKVYSTSV 307
           N + +V+ D  F  + + GFF+G++  +V +I   A  G++V+ ++K+ DN+  V +  +
Sbjct: 267 NGLTLVLHDEYFSKIKSCGFFYGHNGFSVALIFTTAFVGLSVAFILKFRDNMFHVLTAQI 326

Query: 308 AMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKL 347
             ++  +VS F+F F  SL FFL + VV +S+++++A ++
Sbjct: 327 TTVIITIVSYFVFSFKPSLDFFLEAPVVLLSIFIYNASRI 366

Xenopus laevis (taxid: 8355)

>sp|Q8WMS0|S35A2_CANFA UDP-galactose translocator OS=Canis familiaris GN=SLC35A2 PE=2 SV=2

 Score =  137 bits (345), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 132/224 (58%), Gaps = 5/224 (2%)

Query: 124 IPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLC 183
           +P+++Y ++N LQY   + + A  +Q+   L I++T +   ++L + LS +QWA+ +LL 
Sbjct: 117 VPSLIYTLQNNLQYVAISNMPAATFQVTYQLKILTTALFSVLMLNRSLSRLQWASLLLLF 176

Query: 184 CGCT---TAQLNSNSDRVL-QTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQN 239
            G       Q      R L Q P  G    +   L SGFAGVY E I+K   S ++ ++N
Sbjct: 177 TGVAIVQAQQAGGGGPRPLDQNPGAGLAAVVASCLSSGFAGVYFEKILKGS-SGSVWLRN 235

Query: 240 FWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYADNI 299
             L +FG A   V +   +  AV  +GFF GY+     ++LN A  G+ V++V+KYADNI
Sbjct: 236 LQLGLFGTALGLVGLWWAEGTAVARRGFFFGYTPAVWGVVLNQAFGGLLVAVVVKYADNI 295

Query: 300 VKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHS 343
           +K ++TS++++L+ V S+ LFGFH+   F LG+ +V  +VYL+S
Sbjct: 296 LKGFATSLSIVLSTVASIRLFGFHVDPLFALGAGLVIGAVYLYS 339

Transports nucleotide sugars from the cytosol into Golgi vesicles where glycosyltransferases function.

Canis familiaris (taxid: 9615)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	349
449444425	360	PREDICTED: CMP-sialic acid transporter 4	1.0	0.969	0.844	1e-175
395486311	354	CMP-sialic acid transporter-like protein	0.997	0.983	0.850	1e-172
297802420	352	At4g35335 [Arabidopsis lyrata subsp. lyr	0.988	0.980	0.856	1e-171
50198781	352	At4g35335 [Arabidopsis thaliana] gi|5197	0.988	0.980	0.853	1e-171
240256164	352	Nucleotide-sugar transporter family prot	0.988	0.980	0.850	1e-170
356501771	355	PREDICTED: probable UDP-sugar transporte	1.0	0.983	0.836	1e-168
297744466	354	unnamed protein product [Vitis vinifera]	0.997	0.983	0.853	1e-167
356554409	355	PREDICTED: probable UDP-sugar transporte	1.0	0.983	0.825	1e-166
255564904	356	CMP-sialic acid transporter, putative [R	0.948	0.929	0.866	1e-165
225428328	707	PREDICTED: cysteine proteinase-like [Vit	0.991	0.489	0.852	1e-164

>gi|449444425|ref|XP_004139975.1| PREDICTED: CMP-sialic acid transporter 4-like [Cucumis sativus]

 Score =  620 bits (1598), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 304/360 (84%), Positives = 328/360 (91%), Gaps = 11/360 (3%)

Query: 1   MEYRKIKDEDNDGGGSSSG-------DLESLR-GKPISVTNVA---SKSSELANWKRKSV 49
           MEYR+IKD++ DG G  SG       D+ESLR GKPIS +NVA   + S + + W++KS+
Sbjct: 1   MEYRRIKDQEKDGNGDGSGVGVAVADDIESLRAGKPISGSNVAKLGANSFDRSKWQQKSI 60

Query: 50  VTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDD 109
           VTLALTVLTSSQAILIVWSKRAGKYEYSVTTANF+VETLKC LSLAAL+RIW  EGVT+D
Sbjct: 61  VTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFMVETLKCVLSLAALSRIWGSEGVTED 120

Query: 110 NRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKK 169
           NRLSTT DEVIVYPIPA LYLVKNLLQYYIFAYVDAPGYQILKN NIISTG+LYRIILKK
Sbjct: 121 NRLSTTYDEVIVYPIPAALYLVKNLLQYYIFAYVDAPGYQILKNFNIISTGILYRIILKK 180

Query: 170 KLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKK 229
           KLSEIQWAAFILLC GCTTAQLNSNSD VLQTP QGW+MAI+MALLSGFAGVYTEAI+KK
Sbjct: 181 KLSEIQWAAFILLCAGCTTAQLNSNSDHVLQTPFQGWVMAIIMALLSGFAGVYTEAIIKK 240

Query: 230 RPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAV 289
           RPSRN+NVQNFWLYVFGMAFNA+A+VIQDFDA+ NKGFFHGYSFITVLMILNHALSGIAV
Sbjct: 241 RPSRNVNVQNFWLYVFGMAFNAIAMVIQDFDAIANKGFFHGYSFITVLMILNHALSGIAV 300

Query: 290 SMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKLQR 349
           SMV+KYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGS VVSV+VYLHS GKLQR
Sbjct: 301 SMVLKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSTVVSVAVYLHSIGKLQR 360

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|395486311|gb|AFN67104.1| CMP-sialic acid transporter-like protein [Vitis vinifera]

 Score =  610 bits (1572), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 302/355 (85%), Positives = 319/355 (89%), Gaps = 7/355 (1%)

Query: 1   MEYRKIKDEDNDGGGSSSGDLESLRGKPIS------VTNVASKSSELANWKRKSVVTLAL 54
           MEYRK+KD D D G     D+ESLRGK +S      +  +   S +   WKRKS+VTLAL
Sbjct: 1   MEYRKLKDLDKDDGAVGD-DIESLRGKALSGAHTNNMATLGGHSIDRTKWKRKSIVTLAL 59

Query: 55  TVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLST 114
           TVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAAL RIW +EGVTDDNRLS+
Sbjct: 60  TVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALVRIWGNEGVTDDNRLSS 119

Query: 115 TLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEI 174
           +LDEVIV+PIPA LYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEI
Sbjct: 120 SLDEVIVFPIPAALYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEI 179

Query: 175 QWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRN 234
           QWAAFILLC GCTTAQLN +SD VLQ P QGW+MAIVMALLSGFAGVYTEAI+KKRPSRN
Sbjct: 180 QWAAFILLCAGCTTAQLNPSSDHVLQAPFQGWMMAIVMALLSGFAGVYTEAIIKKRPSRN 239

Query: 235 INVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMK 294
           INVQNFWLYVFGM FNAVAIVIQDFDAVMNKGFFHGYS ITVLMI+NHALSGIAVSMVMK
Sbjct: 240 INVQNFWLYVFGMVFNAVAIVIQDFDAVMNKGFFHGYSLITVLMIVNHALSGIAVSMVMK 299

Query: 295 YADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKLQR 349
           YADNIVKVYSTSVAMLLTA+VSVFLFGFHLSLAFFLGS VVSVS+YLHS GKLQR
Sbjct: 300 YADNIVKVYSTSVAMLLTALVSVFLFGFHLSLAFFLGSTVVSVSIYLHSIGKLQR 354

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297802420|ref|XP_002869094.1| At4g35335 [Arabidopsis lyrata subsp. lyrata] gi|297314930|gb|EFH45353.1| At4g35335 [Arabidopsis lyrata subsp. lyrata]

 Score =  606 bits (1563), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 304/355 (85%), Positives = 318/355 (89%), Gaps = 10/355 (2%)

Query: 1   MEYRKIKDEDNDGGGSSSGDLESLRGKP-------ISVTNVASKSSELANWKRKSVVTLA 53
           MEYRKIKDED+   G+   D+ES++GK        I++  +   SSE  NWKRK VVT A
Sbjct: 1   MEYRKIKDEDDHDVGA---DIESVKGKSHTVASSNIAMATLGVGSSERINWKRKGVVTCA 57

Query: 54  LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLS 113
           LT+LTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSL AL RIW +EGVTDDNRLS
Sbjct: 58  LTILTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLLALTRIWKNEGVTDDNRLS 117

Query: 114 TTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSE 173
           TT DEV V+PIPA LYL KNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSE
Sbjct: 118 TTYDEVKVFPIPAALYLFKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSE 177

Query: 174 IQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSR 233
           IQWA FILLCCGCTTAQLNSNSDRVLQT L GW MAIVMALLSGFAGVYTEAI+KKRPSR
Sbjct: 178 IQWAGFILLCCGCTTAQLNSNSDRVLQTSLPGWTMAIVMALLSGFAGVYTEAIIKKRPSR 237

Query: 234 NINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVM 293
           NINVQNFWLYVFGMAFNAVAIVIQDFDAV NKGFFHGYSFITVLMILNHALSGIAVSMVM
Sbjct: 238 NINVQNFWLYVFGMAFNAVAIVIQDFDAVANKGFFHGYSFITVLMILNHALSGIAVSMVM 297

Query: 294 KYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKLQ 348
           KYADNIVKVYSTSVAMLLTAVVSVFLF +HLSLAFFLGS VVSVSVYLHSAGKL+
Sbjct: 298 KYADNIVKVYSTSVAMLLTAVVSVFLFNYHLSLAFFLGSTVVSVSVYLHSAGKLR 352

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|50198781|gb|AAT70424.1| At4g35335 [Arabidopsis thaliana] gi|51971024|dbj|BAD44204.1| unnamed protein product [Arabidopsis thaliana] gi|53828601|gb|AAU94410.1| At4g35335 [Arabidopsis thaliana]

 Score =  605 bits (1560), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 303/355 (85%), Positives = 317/355 (89%), Gaps = 10/355 (2%)

Query: 1   MEYRKIKDEDNDGGGSSSGDLESLRGKP-------ISVTNVASKSSELANWKRKSVVTLA 53
           MEYRKIKDED+    S   D+ES++GK        I++  +   SSE  NWKRK VVT A
Sbjct: 1   MEYRKIKDEDDHDVAS---DIESVKGKSHTVASSNIAMATLGVGSSERINWKRKGVVTCA 57

Query: 54  LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLS 113
           LT+LTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSL AL RIW +EGVTDDNRLS
Sbjct: 58  LTILTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLLALTRIWKNEGVTDDNRLS 117

Query: 114 TTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSE 173
           TT DEV V+PIPA LYL KNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILK+KLSE
Sbjct: 118 TTFDEVKVFPIPAALYLFKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKRKLSE 177

Query: 174 IQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSR 233
           IQWA FILLCCGCTTAQLNSNSDRVLQT L GW MAIVMALLSGFAGVYTEAI+KKRPSR
Sbjct: 178 IQWAGFILLCCGCTTAQLNSNSDRVLQTSLPGWTMAIVMALLSGFAGVYTEAIIKKRPSR 237

Query: 234 NINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVM 293
           NINVQNFWLYVFGMAFNAVAIVIQDFDAV NKGFFHGYSFIT+LMILNHALSGIAVSMVM
Sbjct: 238 NINVQNFWLYVFGMAFNAVAIVIQDFDAVANKGFFHGYSFITLLMILNHALSGIAVSMVM 297

Query: 294 KYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKLQ 348
           KYADNIVKVYSTSVAMLLTAVVSVFLF FHLSLAFFLGS VVSVSVYLHSAGKL+
Sbjct: 298 KYADNIVKVYSTSVAMLLTAVVSVFLFNFHLSLAFFLGSTVVSVSVYLHSAGKLR 352

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240256164|ref|NP_680766.5| Nucleotide-sugar transporter family protein [Arabidopsis thaliana] gi|380876874|sp|F4JN00.1|CSTR4_ARATH RecName: Full=CMP-sialic acid transporter 4; Short=CMP-SA-Tr 4; Short=CMP-Sia-Tr 4 gi|332661100|gb|AEE86500.1| Nucleotide-sugar transporter family protein [Arabidopsis thaliana]

 Score =  602 bits (1552), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 302/355 (85%), Positives = 316/355 (89%), Gaps = 10/355 (2%)

Query: 1   MEYRKIKDEDNDGGGSSSGDLESLRGKP-------ISVTNVASKSSELANWKRKSVVTLA 53
           MEYRKIKDED+    S   D+ES++GK        I++  +   SSE  NWKRK VVT A
Sbjct: 1   MEYRKIKDEDDHDVAS---DIESVKGKSHTVASSNIAMATLGVGSSERINWKRKGVVTCA 57

Query: 54  LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLS 113
           LT+LTSSQAILIVWSKRAGKYEYSVTTANFLV TLKCALSL AL RIW +EGVTDDNRLS
Sbjct: 58  LTILTSSQAILIVWSKRAGKYEYSVTTANFLVGTLKCALSLLALTRIWKNEGVTDDNRLS 117

Query: 114 TTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSE 173
           TT DEV V+PIPA LYL KNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILK+KLSE
Sbjct: 118 TTFDEVKVFPIPAALYLFKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKRKLSE 177

Query: 174 IQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSR 233
           IQWA FILLCCGCTTAQLNSNSDRVLQT L GW MAIVMALLSGFAGVYTEAI+KKRPSR
Sbjct: 178 IQWAGFILLCCGCTTAQLNSNSDRVLQTSLPGWTMAIVMALLSGFAGVYTEAIIKKRPSR 237

Query: 234 NINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVM 293
           NINVQNFWLYVFGMAFNAVAIVIQDFDAV NKGFFHGYSFIT+LMILNHALSGIAVSMVM
Sbjct: 238 NINVQNFWLYVFGMAFNAVAIVIQDFDAVANKGFFHGYSFITLLMILNHALSGIAVSMVM 297

Query: 294 KYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKLQ 348
           KYADNIVKVYSTSVAMLLTAVVSVFLF FHLSLAFFLGS VVSVSVYLHSAGKL+
Sbjct: 298 KYADNIVKVYSTSVAMLLTAVVSVFLFNFHLSLAFFLGSTVVSVSVYLHSAGKLR 352

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501771|ref|XP_003519697.1| PREDICTED: probable UDP-sugar transporter protein SLC35A5-like [Glycine max]

 Score =  597 bits (1539), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 297/355 (83%), Positives = 314/355 (88%), Gaps = 6/355 (1%)

Query: 1   MEYRKIKDEDN--DGGGSSSGD--LESLRGKPISVTNVASKSS--ELANWKRKSVVTLAL 54
           MEYRKIKDED   D G    G   L S+    +S        S  E   WKRKSVVTLAL
Sbjct: 1   MEYRKIKDEDEVRDAGVEDVGKSFLLSVPDNDLSAEAETKIDSHREKVKWKRKSVVTLAL 60

Query: 55  TVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLST 114
           TVLTSSQAILIVWSKRAGKYEYSVTTANF+VETLKCA+SL AL RIW  +GV +DNRL+T
Sbjct: 61  TVLTSSQAILIVWSKRAGKYEYSVTTANFMVETLKCAISLVALGRIWKKDGVNEDNRLTT 120

Query: 115 TLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEI 174
           TLDEVIVYPIPA LYLVKNLLQYYIFAYVDAPGYQILKN NIISTGVLYRIILKKKLSEI
Sbjct: 121 TLDEVIVYPIPAALYLVKNLLQYYIFAYVDAPGYQILKNFNIISTGVLYRIILKKKLSEI 180

Query: 175 QWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRN 234
           QWAAF+LL  GCTTAQLNSNSDRVLQTP QGW+MAIVMALLSGFAGVYTEAI+KKRPSRN
Sbjct: 181 QWAAFVLLAAGCTTAQLNSNSDRVLQTPFQGWVMAIVMALLSGFAGVYTEAIIKKRPSRN 240

Query: 235 INVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMK 294
           INVQNFWLYVFGM FNAVAI++QDFDAVMNKGFFHGYSFITVLMI NHALSGIAVSMVMK
Sbjct: 241 INVQNFWLYVFGMCFNAVAILVQDFDAVMNKGFFHGYSFITVLMIFNHALSGIAVSMVMK 300

Query: 295 YADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKLQR 349
           YADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLG++VVSV++YLHSAGK+QR
Sbjct: 301 YADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGTVVVSVAIYLHSAGKIQR 355

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744466|emb|CBI37728.3| unnamed protein product [Vitis vinifera]

 Score =  593 bits (1530), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 303/355 (85%), Positives = 320/355 (90%), Gaps = 7/355 (1%)

Query: 1   MEYRKIKDEDNDGGGSSSGDLESLRGKPIS------VTNVASKSSELANWKRKSVVTLAL 54
           MEYRK+KD D DGG     D+ESLRGK +S      +  +   S +   WKRKS+VTLAL
Sbjct: 1   MEYRKLKDLDKDGGAGGD-DIESLRGKALSGAHTNNMATLGGHSIDRTKWKRKSIVTLAL 59

Query: 55  TVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLST 114
           TVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAAL RIW +EGVTDDNRLS+
Sbjct: 60  TVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALVRIWGNEGVTDDNRLSS 119

Query: 115 TLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEI 174
           +LDEVIV+PIPA LYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEI
Sbjct: 120 SLDEVIVFPIPAALYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEI 179

Query: 175 QWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRN 234
           QWAAFILLC GCTTAQLN +SD VLQ P QGW+MAIVMALLSGFAGVYTEAI+KKRPSRN
Sbjct: 180 QWAAFILLCAGCTTAQLNPSSDHVLQAPFQGWMMAIVMALLSGFAGVYTEAIIKKRPSRN 239

Query: 235 INVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMK 294
           INVQNFWLYVFGM FNAVAIVIQDFDAVMNKGFFHGYS ITVLMI+NHALSGIAVSMVMK
Sbjct: 240 INVQNFWLYVFGMVFNAVAIVIQDFDAVMNKGFFHGYSLITVLMIVNHALSGIAVSMVMK 299

Query: 295 YADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKLQR 349
           YADNIVKVYSTSVAMLLTA+VSVFLFGFHLSLAFFLGS VVSVS+YLHS GKLQR
Sbjct: 300 YADNIVKVYSTSVAMLLTALVSVFLFGFHLSLAFFLGSTVVSVSIYLHSIGKLQR 354

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554409|ref|XP_003545539.1| PREDICTED: probable UDP-sugar transporter protein SLC35A5-like [Glycine max]

 Score =  592 bits (1526), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 293/355 (82%), Positives = 313/355 (88%), Gaps = 6/355 (1%)

Query: 1   MEYRKIKDEDN--DGGGSSSGD--LESLRGKPISVTNVASKSS--ELANWKRKSVVTLAL 54
           MEYRKIKDED   D G    G   L S+    ++        S  E   WKRKSVVTLAL
Sbjct: 1   MEYRKIKDEDEVRDAGVEDVGKSFLLSVPDNDLTSEGETKIDSHREKVKWKRKSVVTLAL 60

Query: 55  TVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLST 114
           TVLTSSQ ILIVWSKRAGKYEYSVTTANF+VETLKCA+SL AL RIW  +GV +DNRL+T
Sbjct: 61  TVLTSSQGILIVWSKRAGKYEYSVTTANFMVETLKCAISLVALGRIWKKDGVNEDNRLTT 120

Query: 115 TLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEI 174
           TLDEVIVYPIPA LYLVKNLLQYYIFAYVDAPGYQILKN NIISTGVLYRIILKK+LSEI
Sbjct: 121 TLDEVIVYPIPAALYLVKNLLQYYIFAYVDAPGYQILKNFNIISTGVLYRIILKKRLSEI 180

Query: 175 QWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRN 234
           QWAAF+LL  GCTTAQLNSNSDRVLQTP QGW+MAIVMALLSGFAGVYTEAI+KKRPSRN
Sbjct: 181 QWAAFVLLAAGCTTAQLNSNSDRVLQTPFQGWVMAIVMALLSGFAGVYTEAIIKKRPSRN 240

Query: 235 INVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMK 294
           INVQNFWLYVFGM FNAVA+++QDFDAVMNKGFFHGYSFITVLMI NHALSGIAVSMVMK
Sbjct: 241 INVQNFWLYVFGMCFNAVAMLVQDFDAVMNKGFFHGYSFITVLMIFNHALSGIAVSMVMK 300

Query: 295 YADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKLQR 349
           YADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLG++VVSV++YLHSAGK+QR
Sbjct: 301 YADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGTVVVSVAIYLHSAGKIQR 355

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564904|ref|XP_002523445.1| CMP-sialic acid transporter, putative [Ricinus communis] gi|223537273|gb|EEF38904.1| CMP-sialic acid transporter, putative [Ricinus communis]

 Score =  587 bits (1512), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 292/337 (86%), Positives = 310/337 (91%), Gaps = 6/337 (1%)

Query: 1   MEYRKIKDEDNDGGGSSSGDLESLRGKPISV--TNVAS---KSSELANWKRKSVVTLALT 55
           MEYRKIKDED D G +   D+ESLR K +SV  +NVA+    S++ + WKRKS+VTLALT
Sbjct: 1   MEYRKIKDEDKDEGATGD-DIESLRNKSLSVAASNVAALGGGSNDRSKWKRKSIVTLALT 59

Query: 56  VLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTT 115
            LTSSQAILIVWSKRAG+YEYSVTTANFLVETLKC LSLAALARIW +EGVT+DNRLSTT
Sbjct: 60  FLTSSQAILIVWSKRAGRYEYSVTTANFLVETLKCVLSLAALARIWKNEGVTEDNRLSTT 119

Query: 116 LDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQ 175
           LDEV VYPIPA LYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLY++ILK+KLSEIQ
Sbjct: 120 LDEVSVYPIPAALYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYQMILKRKLSEIQ 179

Query: 176 WAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNI 235
           WAAFILLC GCTTAQLN +SD VLQTP QGWIMAIVMALLSGFAGVYTEAI+KKRPSRNI
Sbjct: 180 WAAFILLCAGCTTAQLNPSSDHVLQTPYQGWIMAIVMALLSGFAGVYTEAIIKKRPSRNI 239

Query: 236 NVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKY 295
           NVQNFWLYVFGM FNAVAIVIQDFDAVMNKGFFHGYS ITVLMILNHALSGIAVSMVMKY
Sbjct: 240 NVQNFWLYVFGMIFNAVAIVIQDFDAVMNKGFFHGYSLITVLMILNHALSGIAVSMVMKY 299

Query: 296 ADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGS 332
           ADNIVKVY+TSVAMLLTAVVSVFLFGFHLSLAFFLGS
Sbjct: 300 ADNIVKVYATSVAMLLTAVVSVFLFGFHLSLAFFLGS 336

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428328|ref|XP_002279940.1| PREDICTED: cysteine proteinase-like [Vitis vinifera]

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 301/353 (85%), Positives = 318/353 (90%), Gaps = 7/353 (1%)

Query: 1   MEYRKIKDEDNDGGGSSSGDLESLRGKPIS------VTNVASKSSELANWKRKSVVTLAL 54
           MEYRK+KD D DGG     D+ESLRGK +S      +  +   S +   WKRKS+VTLAL
Sbjct: 1   MEYRKLKDLDKDGGAGGD-DIESLRGKALSGAHTNNMATLGGHSIDRTKWKRKSIVTLAL 59

Query: 55  TVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLST 114
           TVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAAL RIW +EGVTDDNRLS+
Sbjct: 60  TVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALVRIWGNEGVTDDNRLSS 119

Query: 115 TLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEI 174
           +LDEVIV+PIPA LYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEI
Sbjct: 120 SLDEVIVFPIPAALYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEI 179

Query: 175 QWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRN 234
           QWAAFILLC GCTTAQLN +SD VLQ P QGW+MAIVMALLSGFAGVYTEAI+KKRPSRN
Sbjct: 180 QWAAFILLCAGCTTAQLNPSSDHVLQAPFQGWMMAIVMALLSGFAGVYTEAIIKKRPSRN 239

Query: 235 INVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMK 294
           INVQNFWLYVFGM FNAVAIVIQDFDAVMNKGFFHGYS ITVLMI+NHALSGIAVSMVMK
Sbjct: 240 INVQNFWLYVFGMVFNAVAIVIQDFDAVMNKGFFHGYSLITVLMIVNHALSGIAVSMVMK 299

Query: 295 YADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKL 347
           YADNIVKVYSTSVAMLLTA+VSVFLFGFHLSLAFFLGS VVSVS+YLHS GKL
Sbjct: 300 YADNIVKVYSTSVAMLLTALVSVFLFGFHLSLAFFLGSTVVSVSIYLHSIGKL 352

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	349
TAIR|locus:504955503	352	AT4G35335 [Arabidopsis thalian	0.994	0.985	0.832	4.3e-148
TAIR|locus:2152955	340	AT5G41760 [Arabidopsis thalian	0.839	0.861	0.421	2e-56
ZFIN|ZDB-GENE-080716-17	337	slc35a1 "solute carrier family	0.833	0.863	0.32	2.6e-38
UNIPROTKB|P78382	337	SLC35A1 "CMP-sialic acid trans	0.822	0.851	0.304	3.4e-38
UNIPROTKB|F1S0G0	339	SLC35A1 "Uncharacterized prote	0.822	0.846	0.304	4.3e-38
RGD|1311359	336	Slc35a1 "solute carrier family	0.822	0.854	0.304	7e-38
UNIPROTKB|F1SLS8	421	SLC35A5 "Uncharacterized prote	0.449	0.372	0.361	1.7e-37
UNIPROTKB|Q3SZP1	337	SLC35A1 "Solute carrier family	0.822	0.851	0.304	1.9e-37
UNIPROTKB|Q8WMR9	337	SLC35A1 "Uncharacterized prote	0.822	0.851	0.307	1.9e-37
WB|WBGene00005153	368	srf-3 [Caenorhabditis elegans	0.902	0.855	0.312	2.4e-37

TAIR|locus:504955503 AT4G35335 [Arabidopsis thaliana (taxid:3702)]

 Score = 1446 (514.1 bits), Expect = 4.3e-148, P = 4.3e-148
 Identities = 294/353 (83%), Positives = 306/353 (86%)

Query:     1 MEYRKIKXXXXXXXXXXXXXXXXXRGKPISVTNVASK-----SSELANWKRKSVVTLALT 55
             MEYRKIK                 +   ++ +N+A       SSE  NWKRK VVT ALT
Sbjct:     1 MEYRKIKDEDDHDVASDIESVKG-KSHTVASSNIAMATLGVGSSERINWKRKGVVTCALT 59

Query:    56 VLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTT 115
             +LTSSQAILIVWSKRAGKYEYSVTTANFLV TLKCALSL AL RIW +EGVTDDNRLSTT
Sbjct:    60 ILTSSQAILIVWSKRAGKYEYSVTTANFLVGTLKCALSLLALTRIWKNEGVTDDNRLSTT 119

Query:   116 LDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQ 175
              DEV V+PIPA LYL KNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILK+KLSEIQ
Sbjct:   120 FDEVKVFPIPAALYLFKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKRKLSEIQ 179

Query:   176 WAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNI 235
             WA FILLCCGCTTAQLNSNSDRVLQT L GW MAIVMALLSGFAGVYTEAI+KKRPSRNI
Sbjct:   180 WAGFILLCCGCTTAQLNSNSDRVLQTSLPGWTMAIVMALLSGFAGVYTEAIIKKRPSRNI 239

Query:   236 NVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKY 295
             NVQNFWLYVFGMAFNAVAIVIQDFDAV NKGFFHGYSFIT+LMILNHALSGIAVSMVMKY
Sbjct:   240 NVQNFWLYVFGMAFNAVAIVIQDFDAVANKGFFHGYSFITLLMILNHALSGIAVSMVMKY 299

Query:   296 ADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKLQ 348
             ADNIVKVYSTSVAMLLTAVVSVFLF FHLSLAFFLGS VVSVSVYLHSAGKL+
Sbjct:   300 ADNIVKVYSTSVAMLLTAVVSVFLFNFHLSLAFFLGSTVVSVSVYLHSAGKLR 352

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA;ISS

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2152955 AT5G41760 [Arabidopsis thaliana (taxid:3702)]

 Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
 Identities = 128/304 (42%), Positives = 185/304 (60%)

Query:    50 VTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDD 109
             V + LT+LTSSQ IL   S+  G Y+Y   T  FL E  K  +S   L R       T  
Sbjct:     9 VAVLLTILTSSQGILTTLSQSDGGYKYDYATVPFLAEVFKLIISGLFLWREMRTSSSTT- 67

Query:   110 NRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKK 169
             +R++T    V ++ IP+++YL+ N +Q+    YVD   YQI+ NL I++TG+L+R+ LK+
Sbjct:    68 SRITTDWKSVRLFVIPSLIYLIHNNVQFATLTYVDTSTYQIMGNLKIVTTGILFRLFLKR 127

Query:   170 KLSEIQWAAFILLCCGCTTAQLN----SNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEA 225
             KLS++QW A  LL  G TT+Q+     ++ D +   P+QG+++ I+ A LS  AG+YTE 
Sbjct:   128 KLSKLQWMAIGLLAVGTTTSQVKGCGEASCDSLFTAPIQGYLLGILSAGLSALAGIYTEF 187

Query:   226 IMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKG-----FFHGYSFITVLMIL 280
             +MK R +  +  QN  LY FG  FN   ++  DF     KG      F GYS  T L++L
Sbjct:   188 LMK-RNNDTLYWQNLQLYTFGSLFNVARLIADDFRHGFEKGPWWQRIFDGYSITTWLVVL 246

Query:   281 NHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVY 340
             N   +G+ VS +MKYADNIVKVYSTS+AMLLT V S++LF F  +L  FLG ++  +S++
Sbjct:   247 NLGSTGLLVSWLMKYADNIVKVYSTSMAMLLTMVASIYLFSFKPTLQLFLGIVICIMSLH 306

Query:   341 LHSA 344
             ++ A
Sbjct:   307 MYFA 310

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA;ISS

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0005456 "CMP-N-acetylneuraminate transmembrane transporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015780 "nucleotide-sugar transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=ISS;IDA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IDA

GO:0015739 "sialic acid transport" evidence=IDA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

ZFIN|ZDB-GENE-080716-17 slc35a1 "solute carrier family 35 (CMP-sialic acid transporter), member A1" [Danio rerio (taxid:7955)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 96/300 (32%), Positives = 168/300 (56%)

Query:    54 LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEG---VTDDN 110
             +T++ ++  + + +++      Y  TTA  L E +K  LSL  L R     G        
Sbjct:    18 MTLIAATYTVALRYTRTVSTELYFSTTAVCLAEIIKLLLSLIMLVRETGDVGRCRAALVT 77

Query:   111 RLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKK 170
              +  +  E++   +P+V+Y ++N + +   + +DA  YQ+   L I  T +   ++L + 
Sbjct:    78 HIFRSPKELLKLSVPSVVYAIQNNMAFVALSNLDAAVYQVTYQLKIPCTALCTVLMLNRS 137

Query:   171 LSEIQWAAFILLCCGCTTAQL---NSNSDRVLQTPLQGWIMAIVMALL-SGFAGVYTEAI 226
             LS +QW +  +LC G T  Q    +S   +V Q P  G+ MAI +A+L SGFAGVY E +
Sbjct:   138 LSRLQWFSVFMLCAGVTLVQWTPPHSTKVQVEQNPFLGF-MAIAVAVLCSGFAGVYFEKV 196

Query:   227 MKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSG 286
             +K   + ++ V+N  +Y+ G+A   + + + D   V+ KGFF+GY+    L++   ++ G
Sbjct:   197 LKSSDT-SLWVRNIQMYLSGIAVTLMGVYMTDGARVLEKGFFYGYTPWVCLVVFLASVGG 255

Query:   287 IAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGK 346
             +  S+V+KY DNI+K +S + A++L+ V SV LFG  ++L F  G+++V VS+YL+   K
Sbjct:   256 MYTSVVVKYTDNIMKGFSAAAAIVLSTVASVLLFGLQITLTFISGALLVCVSIYLYGLPK 315

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|P78382 SLC35A1 "CMP-sialic acid transporter" [Homo sapiens (taxid:9606)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 90/296 (30%), Positives = 168/296 (56%)

Query:    54 LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALAR----IWNHEGVTDD 109
             +T++ +   I + +++ + K  Y  TTA  + E +K  LS+  LA+    +   +    +
Sbjct:    20 MTLMAAVYTIALRYTRTSDKELYFSTTAVCITEVIKLLLSVGILAKETGSLGRFKASLRE 79

Query:   110 NRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKK 169
             N L +   E++   +P+++Y V+N + +   + +DA  YQ+   L I  T +   ++L +
Sbjct:    80 NVLGSP-KELLKLSVPSLVYAVQNNMAFLALSNLDAAVYQVTYQLKIPCTALCTVLMLNR 138

Query:   170 KLSEIQWAAFILLCCGCTTAQLN-SNSDRVL--QTPLQGWIMAIVMALLSGFAGVYTEAI 226
              LS++QW +  +LC G T  Q   + + +V+  Q PL G+    +  L SGFAGVY E +
Sbjct:   139 TLSKLQWVSVFMLCAGVTLVQWKPAQATKVVVEQNPLLGFGAIAIAVLCSGFAGVYFEKV 198

Query:   227 MKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSG 286
             +K   + ++ V+N  +Y+ G+      + + D   +  KGFF+GY++    +I   ++ G
Sbjct:   199 LKSSDT-SLWVRNIQMYLSGIIVTLAGVYLSDGAEIKEKGFFYGYTYYVWFVIFLASVGG 257

Query:   287 IAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLH 342
             +  S+V+KY DNI+K +S + A++L+ + SV LFG  ++L F LG+++V VS+YL+
Sbjct:   258 LYTSVVVKYTDNIMKGFSAAAAIVLSTIASVMLFGLQITLTFALGTLLVCVSIYLY 313

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0005456 "CMP-N-acetylneuraminate transmembrane transporter activity" evidence=TAS

GO:0005794 "Golgi apparatus" evidence=TAS

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0005975 "carbohydrate metabolic process" evidence=TAS

GO:0006464 "cellular protein modification process" evidence=TAS

GO:0015782 "CMP-N-acetylneuraminate transport" evidence=TAS

GO:0000139 "Golgi membrane" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

UNIPROTKB|F1S0G0 SLC35A1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 90/296 (30%), Positives = 170/296 (57%)

Query:    54 LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALAR----IWNHEGVTDD 109
             +T++ ++  + + +++ + K  Y  TTA  + E +K  LS+  LA+    +   +    +
Sbjct:    22 MTLVAAAYTVALRYTRTSDKELYFSTTAVCITEVIKLFLSVGILAKETGNLGRFKASLRE 81

Query:   110 NRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKK 169
             N L +   E++   +P+++Y V+N + +   + +DA  YQ+   L I  T +   ++L +
Sbjct:    82 NVLGSP-KELMKLSVPSLVYAVQNNMAFLALSNLDAAVYQVTYQLKIPCTALCTVLMLNR 140

Query:   170 KLSEIQWAAFILLCCGCTTAQLN-SNSDRVL--QTPLQGWIMAIVMALLSGFAGVYTEAI 226
              LS++QW +  +LC G    Q   + + +V+  Q PL G+    +  L SGFAGVY E +
Sbjct:   141 TLSKLQWISVFMLCGGVILVQWKPAEATKVMVEQNPLLGFGAIAIAVLCSGFAGVYFEKV 200

Query:   227 MKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSG 286
             +K   + ++ V+N  +Y+ G+    V + + D   +  KGFF+GY++   L+I   ++ G
Sbjct:   201 LKSSDT-SLWVRNIQMYLSGIVVTLVGVYLSDGAEIKEKGFFYGYTYYVWLVIFLASVGG 259

Query:   287 IAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLH 342
             +  S+V+KY DNI+K +S + A++L+ + SV LFG  ++L F LG+++V VS+YL+
Sbjct:   260 LYTSIVVKYTDNIMKGFSAAAAIVLSTIASVMLFGLQITLTFALGTLLVCVSIYLY 315

GO:0016021 "integral to membrane" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

RGD|1311359 Slc35a1 "solute carrier family 35 (CMP-sialic acid transporter), member A1" [Rattus norvegicus (taxid:10116)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 90/296 (30%), Positives = 169/296 (57%)

Query:    54 LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALAR----IWNHEGVTDD 109
             +T++ ++  I + +++   +  Y  TTA  + E +K  +S+  LA+    +   +    +
Sbjct:    20 MTLVAAAYTIALRYTRTTAEGLYFSTTAVCITEVIKLLISVGLLAKETGSLGRFKASLSE 79

Query:   110 NRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKK 169
             N L +   E++   +P+++Y V+N + +   + +DA  YQ+   L I  T +   ++L +
Sbjct:    80 NVLGSP-KELLKLSVPSLVYAVQNNMAFLALSNLDAAVYQVTYQLKIPCTALCTVLMLNR 138

Query:   170 KLSEIQWAAFILLCCGCTTAQLN-SNSDRVL--QTPLQGWIMAIVMALLSGFAGVYTEAI 226
              LS++QW +  +LC G T  Q   + + +V+  Q PL G+    +  L SGFAGVY E +
Sbjct:   139 SLSKLQWISVFMLCGGVTLVQWKPAQATKVVVAQNPLLGFGAIAIAVLCSGFAGVYFEKV 198

Query:   227 MKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSG 286
             +K   + ++ V+N  +Y+ G+A       + D   +  KGFF+GY++    +I   ++ G
Sbjct:   199 LKSSDT-SLWVRNIQMYLSGIAVTLAGTYLSDGAEIKEKGFFYGYTYYVWFVIFLASVGG 257

Query:   287 IAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLH 342
             +  S+V+KY DNI+K +S + A++L+ V SV LFG  ++L+F LG+++V VS+YL+
Sbjct:   258 LYTSVVVKYTDNIMKGFSAAAAIVLSTVASVILFGLQITLSFTLGALLVCVSIYLY 313

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1SLS8 SLC35A5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 249 (92.7 bits), Expect = 1.7e-37, Sum P(2) = 1.7e-37
 Identities = 60/166 (36%), Positives = 99/166 (59%)

Query:   187 TTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKK--RPSRNINVQNFWLYV 244
             TTAQ+ S+    ++  L G I+ IV   +S  A +Y E IMK+  + + NI VQN  LY 
Sbjct:   220 TTAQVFSH----IRLGL-GHILIIVQCFISSMANIYNEKIMKEGNQLTENIFVQNSKLYF 274

Query:   245 FGMAFNAVAIVIQ--DFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYADNIVKV 302
             FG+ FN + + +Q  + D + N GFF+G++  +V +I   A+ G++V+ ++K+ DN+  V
Sbjct:   275 FGVFFNGLTLGLQSNNRDQIKNCGFFYGHNAFSVALIFVTAIQGLSVAFILKFLDNMFHV 334

Query:   303 YSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKLQ 348
                 V  ++   VSV +F F  SL FFL +  V +S+++++A K Q
Sbjct:   335 MMAQVTTVIITTVSVLVFDFRPSLEFFLEAPSVLLSIFIYNASKPQ 380

GO:0016021 "integral to membrane" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

UNIPROTKB|Q3SZP1 SLC35A1 "Solute carrier family 35 (CMP-sialic acid transporter), member A1" [Bos taurus (taxid:9913)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 90/296 (30%), Positives = 168/296 (56%)

Query:    54 LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALAR----IWNHEGVTDD 109
             +T++ ++  + + +++ + K  Y  TTA  + E +K  LS+  LA+    +   +    +
Sbjct:    20 MTLVAAAYTVALRYTRTSDKELYFSTTAVCITEVIKLLLSVGILAKETGNLGRFKASLRE 79

Query:   110 NRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKK 169
             N L +   E++   +P+++Y V+N + +   + +DA  YQ+   L I  T +   ++L +
Sbjct:    80 NVLGSP-KELMKLSVPSLVYAVQNNMAFLALSNLDAAVYQVTYQLKIPCTALCTVLMLNR 138

Query:   170 KLSEIQWAAFILLCCGCTTAQLN-SNSDRVL--QTPLQGWIMAIVMALLSGFAGVYTEAI 226
              LS++QW +  +LC G    Q   + + +V+  Q PL G+    V  L SGFAGVY E +
Sbjct:   139 TLSKLQWISVFMLCGGVILVQWKPAQATKVVVEQNPLLGFGAIAVAVLCSGFAGVYFEKV 198

Query:   227 MKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSG 286
             +K   + ++ V+N  +Y+ G+    V + + D   +  KGFF GY++    +I   ++ G
Sbjct:   199 LKSSDT-SLWVRNIQMYLSGIVVTLVGVYLSDGAEIKEKGFFFGYTYYVWFVIFLASVGG 257

Query:   287 IAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLH 342
             +  S+V+KY DNI+K +S + A++L+ + SV LFG  ++L F LG+++V VS+YL+
Sbjct:   258 LYTSVVVKYTDNIMKGFSAAAAIVLSTIASVMLFGLQITLTFALGTLLVCVSIYLY 313

GO:0016021 "integral to membrane" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

UNIPROTKB|Q8WMR9 SLC35A1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 91/296 (30%), Positives = 168/296 (56%)

Query:    54 LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALAR----IWNHEGVTDD 109
             +T++ ++  I + +++ + K  Y  TTA  + E +K  LS+  LA+    +   +    +
Sbjct:    20 MTLVAAAYTIALRYTRTSDKELYFSTTAVCITEVIKLLLSVGILAKEAGSLGRFKASLKE 79

Query:   110 NRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKK 169
             N L +   E++   +P+++Y V+N + +   + +DA  YQ+   L I  T +   ++L +
Sbjct:    80 NVLGSP-KELMKLSVPSLVYAVQNNMAFLALSNLDAAVYQVTYQLKIPCTALCTVLMLNR 138

Query:   170 KLSEIQWAAFILLCCGCTTAQLN-SNSDRVL--QTPLQGWIMAIVMALLSGFAGVYTEAI 226
              LS++QW +  +LC G    Q   + + +V+  Q PL G+    V  L SGFAGVY E +
Sbjct:   139 TLSKLQWISVFMLCGGVILVQWKPAQATKVVVEQNPLLGFGAIAVAVLCSGFAGVYFEKV 198

Query:   227 MKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSG 286
             +K   + ++ V+N  +Y+ G+    V + + D   +  KGFF+GY++    +I   ++ G
Sbjct:   199 LKSSDT-SLWVRNIQMYLSGIVVTLVGVYLSDGAEINEKGFFYGYTYYVWFVIFLASVGG 257

Query:   287 IAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLH 342
             +  S+V+KY DNI+K +S + A++L+   SV LFG  ++L F LG+++V VS+YL+
Sbjct:   258 LYTSVVVKYTDNIMKGFSAAAAIVLSTFASVMLFGLQITLTFALGTLLVCVSIYLY 313

GO:0016021 "integral to membrane" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

WB|WBGene00005153 srf-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 101/323 (31%), Positives = 175/323 (54%)

Query:    28 PISVTNVASKSSELANWKRKSVVTLALTVLTSSQAILIVWSK-RAGKYEYSVTTANFLVE 86
             P+ + +V  +SS+ +    K+ + + LT+  S   +LI +S+ R     +  T A +L E
Sbjct:    24 PVPLVSVGRESSQ-SKGNMKTAILIWLTLQNSIHTLLIRYSRAREVDAMFVSTVAVWLTE 82

Query:    87 TLKCALSLAALARIWNHEGVTDDNR---LSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYV 143
              +KC + L  +A+           R   L    D + V  IPA++Y+V+N L Y   +++
Sbjct:    83 VIKCFICLFLVAQEETPRRFIHALRTQILEQPYDTLKVC-IPAMIYIVQNNLFYVAASHL 141

Query:   144 DAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVL--QT 201
             DA  + I   L I +  +   IIL++ L+  QW A  +L  G +  QL     +    ++
Sbjct:   142 DAATFMITSQLKIFTAAIFTVIILRRSLNRTQWFALAVLFVGVSLVQLQGTKAKESSGES 201

Query:   202 PLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDA 261
             P  G++  +V   LSGFAG+Y E I+K     ++ ++N  + VF +  +  AI +QD   
Sbjct:   202 PFVGFVAVVVACCLSGFAGIYFEKILKGSAPVSLWMRNVQMAVFSIPASFSAIYMQDSKT 261

Query:   262 VMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFG 321
             V   G  +G+  I  L +L + + G++V++ +KYADNI K ++TSVA++L+ + S+FLF 
Sbjct:   262 VNEYGLLYGFDSIVWLTVLWYGVGGLSVAVCIKYADNIAKNFATSVAIILSTIGSIFLFD 321

Query:   322 FHLSLAFFLGSIVVSVSVYLHSA 344
             F  S  F LG+ +V  S++L+S+
Sbjct:   322 FIPSFTFLLGASLVIFSIFLYSS 344

GO:0016020 "membrane" evidence=IEA

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=IEA

GO:0015780 "nucleotide-sugar transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0005459 "UDP-galactose transmembrane transporter activity" evidence=IDA

GO:0005462 "UDP-N-acetylglucosamine transmembrane transporter activity" evidence=IDA

GO:0015785 "UDP-galactose transport" evidence=IDA

GO:0015788 "UDP-N-acetylglucosamine transport" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P78382	S35A1_HUMAN	No assigned EC number	0.3040	0.8223	0.8516	yes	no
Q93890	SRF3_CAEEL	No assigned EC number	0.3107	0.9083	0.8614	yes	no
P87041	GMS1_SCHPO	No assigned EC number	0.3028	0.8510	0.8413	yes	no
F4JN00	CSTR4_ARATH	No assigned EC number	0.8507	0.9885	0.9801	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh1_pm.C_scaffold_7000440 annotation not avaliable (352 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	349
pfam04142	238	pfam04142, Nuc_sug_transp, Nucleotide-sugar transp	1e-56
TIGR00803	222	TIGR00803, nst, UDP-galactose transporter	7e-25
pfam08449	303	pfam08449, UAA, UAA transporter family	2e-09
COG0697	292	COG0697, RhaT, Permeases of the drug/metabolite tr	4e-05

>gnl|CDD|217924 pfam04142, Nuc_sug_transp, Nucleotide-sugar transporter

 Score =  183 bits (467), Expect = 1e-56
 Identities = 82/218 (37%), Positives = 126/218 (57%), Gaps = 7/218 (3%)

Query: 124 IPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLC 183
           +PA +Y ++N L Y   + +DA  YQ+   L I++T +   ++L +KLS  QWA+ +LL 
Sbjct: 22  VPAFIYTLQNNLLYVALSNLDAATYQVTYQLKILTTALFSVLMLGRKLSWYQWASLLLLF 81

Query: 184 CGCTTAQLNSNSDR------VLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINV 237
            G    QL+  S          Q P  G    +     SGFAGVY E I+K   + +I +
Sbjct: 82  LGVAIVQLDQKSSETNSKRGAEQNPGLGLSAVLAACFTSGFAGVYFEKILKG-SNTSIWI 140

Query: 238 QNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYAD 297
           +N  LY FG+ F  +   + D  A+  KGFF GY+     ++L  A+ G+ V++V+KYAD
Sbjct: 141 RNIQLYFFGIFFALLTCWLYDGSAISEKGFFFGYTAFVWAVVLLQAVGGLVVAVVVKYAD 200

Query: 298 NIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVV 335
           NI+K ++TS+A++L+ V SV LF F  +L F LG+I+V
Sbjct: 201 NILKGFATSLAIILSTVASVLLFDFRPTLTFLLGAILV 238

This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. Human SLC35A1 transports CMP-sialic acid, SLC35A2 transports UDP-galactose and SLC35A3 transports UDP-GlcNAc. Length = 238

>gnl|CDD|129885 TIGR00803, nst, UDP-galactose transporter

 Score =  100 bits (250), Expect = 7e-25
 Identities = 68/223 (30%), Positives = 115/223 (51%), Gaps = 8/223 (3%)

Query: 124 IPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLC 183
           +P  +   +N L       + A G Q+ + L I+ST ++    L   L + QW +  LL 
Sbjct: 4   VPIHIIFKQNNLVLIALGNLLAAGKQVTQ-LKILSTALMTLGSLVASLGDDQWFSLKLLK 62

Query: 184 CGCTTAQLNSNSDRVL--QTPLQGWIMAIVMALLS-GFAGVYTEAIMK-KRPSRNINVQN 239
            G    Q+  +S + L    P+ G + A++ ALLS GFAGVY E I+K           N
Sbjct: 63  LGVAIVQMVQSSAKTLMFGNPVVG-LSAVLSALLSSGFAGVYFEKILKDGDTMFWSR--N 119

Query: 240 FWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYADNI 299
             L +FG+      ++  D   + N GFF GY     ++ L +   G+ +  V++YADN 
Sbjct: 120 LQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVGLLNVGGGLCIGGVVRYADNT 179

Query: 300 VKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLH 342
            K + T+++++L+ + SV LF   +S  F+LG+I+V ++ +L+
Sbjct: 180 TKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222

The 10-12 TMS Nucleotide Sugar Transporters (TC 2.A.7.10)Nucleotide-sugar transporters (NSTs) are found in the Golgi apparatus and the endoplasmic reticulum of eukaryotic cells. Members of the family have been sequenced from yeast, protozoans and animals. Animals such as C. elegans possess many of these transporters. Humans have at least two closely related isoforms of the UDP-galactose:UMP exchange transporter.NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids. Length = 222

>gnl|CDD|219846 pfam08449, UAA, UAA transporter family

 Score = 57.6 bits (140), Expect = 2e-09
 Identities = 44/239 (18%), Positives = 98/239 (41%), Gaps = 20/239 (8%)

Query: 122 YPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFIL 181
           Y +    + + ++L      Y+  P + I K+  +I   +L  +I  K+ S +Q+ + +L
Sbjct: 67  YVLIVATFFLSSVLNNEALKYISYPTHVIFKSCKLIPVMILGILIYGKRYSSLQYLSALL 126

Query: 182 LCCGCTTAQLNSNSDRVLQ-----TPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNIN 236
           +  G     L S  D         +   G  +     L+    G   E + KK    +  
Sbjct: 127 ITLGVIIFTLASAKDSKNSKLTTFSDNVGIALLFGALLMDALTGNTQEKLYKKYGKHSKE 186

Query: 237 VQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFIT-----VLMILNHALSGIA--- 288
           +  F+ ++  + F  + ++            F   SF       +  +L ++L+      
Sbjct: 187 MM-FYSHLLSLPFFLLGLLDIR-----TGLLFSAESFCLRHPSVLFYLLLNSLTQYVGQF 240

Query: 289 -VSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGK 346
            V  ++     +     T++   ++ ++SV LFG  L+L  +LG+++V + ++L++  K
Sbjct: 241 FVFYLISEFGALTVTLVTTLRKFVSLLLSVLLFGNPLTLQQWLGTLLVFLGIFLYAYLK 299

This family includes transporters with a specificity for UDP-N-acetylglucosamine. Length = 303

>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

 Score = 44.5 bits (105), Expect = 4e-05
 Identities = 48/308 (15%), Positives = 99/308 (32%), Gaps = 17/308 (5%)

Query: 43  NWKRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWN 102
             +   +  LAL +      +  +  K A +       A  L   +   L L  L     
Sbjct: 1   MKRALLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPR 60

Query: 103 HEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVL 162
                           +++  +  +   +  LL +    Y  A    ++  L  + T +L
Sbjct: 61  G-------LRPALRPWLLLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALL 113

Query: 163 YRIIL-KKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGV 221
             ++L  ++LS +Q    +L   G     L           L G ++A+  ALL      
Sbjct: 114 AVLLLLGERLSLLQILGILLALAGVLLILLGGGGG--GILSLLGLLLALAAALLWALYTA 171

Query: 222 YTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILN 281
             + + +  P          L +  +      +                +  +  L + +
Sbjct: 172 LVKRLSRLGPV--TLALLLQLLLALLLLLLFFLSGFGAPI-----LSRAWLLLLYLGVFS 224

Query: 282 HALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYL 341
             L+ +     ++     +    + +  +  A++ V L G  LS A  LG+ +V + V L
Sbjct: 225 TGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLL 284

Query: 342 HSAGKLQR 349
            S    +R
Sbjct: 285 ASLRARRR 292

Length = 292

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	349
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	100.0
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	100.0
PLN00411	358	nodulin MtN21 family protein; Provisional	99.96
PRK15430	296	putative chloramphenical resistance permease RarD;	99.94
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.94
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.94
PRK11272	292	putative DMT superfamily transporter inner membran	99.94
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.94
PRK11689	295	aromatic amino acid exporter; Provisional	99.94
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.93
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.92
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.92
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.9
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	99.9
KOG3912	372	consensus Predicted integral membrane protein [Gen	99.88
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.88
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.87
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.86
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.7
KOG1581	327	consensus UDP-galactose transporter related protei	99.69
KOG1580	337	consensus UDP-galactose transporter related protei	99.67
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.65
COG2962	293	RarD Predicted permeases [General function predict	99.61
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	99.53
KOG1443	349	consensus Predicted integral membrane protein [Fun	99.51
KOG2766	336	consensus Predicted membrane protein [Function unk	99.47
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	99.46
KOG2765	416	consensus Predicted membrane protein [Function unk	99.42
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.37
KOG1582	367	consensus UDP-galactose transporter related protei	99.35
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	99.33
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.16
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	99.11
COG2510	140	Predicted membrane protein [Function unknown]	99.1
PF13536	113	EmrE: Multidrug resistance efflux transporter	99.07
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	99.0
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	98.82
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	98.79
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	98.78
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	98.76
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.71
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	98.64
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.6
COG2510	140	Predicted membrane protein [Function unknown]	98.59
PLN00411	358	nodulin MtN21 family protein; Provisional	98.49
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	98.47
PRK10532	293	threonine and homoserine efflux system; Provisiona	98.47
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.45
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.44
PRK11689	295	aromatic amino acid exporter; Provisional	98.44
PRK11272	292	putative DMT superfamily transporter inner membran	98.39
PRK13499	345	rhamnose-proton symporter; Provisional	98.38
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	98.35
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.29
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	98.18
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	98.11
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.09
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.05
PRK15430	296	putative chloramphenical resistance permease RarD;	98.04
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	97.9
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.84
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.8
PRK11431	105	multidrug efflux system protein; Provisional	97.8
COG2076	106	EmrE Membrane transporters of cations and cationic	97.79
COG0697	292	RhaT Permeases of the drug/metabolite transporter	97.73
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.72
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	97.69
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.64
PF13536	113	EmrE: Multidrug resistance efflux transporter	97.56
KOG2922	335	consensus Uncharacterized conserved protein [Funct	97.53
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	97.4
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.38
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	97.32
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	97.3
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.2
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	97.13
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	97.04
COG2076	106	EmrE Membrane transporters of cations and cationic	97.0
PRK11431	105	multidrug efflux system protein; Provisional	96.96
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	96.83
PRK10650	109	multidrug efflux system protein MdtI; Provisional	96.79
KOG1581	327	consensus UDP-galactose transporter related protei	96.43
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	96.36
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	96.27
COG2962	293	RarD Predicted permeases [General function predict	96.16
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	96.05
PRK13499	345	rhamnose-proton symporter; Provisional	95.65
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	95.31
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	95.31
KOG4510	346	consensus Permease of the drug/metabolite transpor	94.81
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	94.66
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	94.24
KOG2765	416	consensus Predicted membrane protein [Function unk	93.92
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	93.2
KOG1580	337	consensus UDP-galactose transporter related protei	93.06
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	92.29
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	90.94
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	90.7
KOG2922	335	consensus Uncharacterized conserved protein [Funct	90.09
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	89.82
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	86.85
PF04342	108	DUF486: Protein of unknown function, DUF486; Inter	86.51
COG3169	116	Uncharacterized protein conserved in bacteria [Fun	84.38
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	82.46
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	80.3

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=100.00  E-value=6.5e-48  Score=353.98  Aligned_cols=301  Identities=37%  Similarity=0.596  Sum_probs=270.5

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhh--cCC-CC-CCccccccchhhh
Q 018904           46 RKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNH--EGV-TD-DNRLSTTLDEVIV  121 (349)
Q Consensus        46 ~~~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~--~~~-~~-~~~~~~~~~~l~~  121 (349)
                      .+++.++.+++++++.....|+++..++++|.|++++++.|++|+++|..+.+++.++  ++. +. ......+|++.++
T Consensus        15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk   94 (345)
T KOG2234|consen   15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK   94 (345)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence            7899999999999999999999998778899999999999999999999998543211  110 00 1112255678999


Q ss_pred             hhHHHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhcccc---CCC---
Q 018904          122 YPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN---SNS---  195 (349)
Q Consensus       122 ~~i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~---~~~---  195 (349)
                      ..+|+++|+++|+++|+++.++|++++|+..|++++.||+++.++|+||++++||.++++.++|+.++|.+   +.+   
T Consensus        95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~  174 (345)
T KOG2234|consen   95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKS  174 (345)
T ss_pred             HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999943   211   


Q ss_pred             CcccccchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccChHHH
Q 018904          196 DRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFIT  275 (349)
Q Consensus       196 ~~~~~~~~~G~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (349)
                      +...+++..|...++.+|++++++++|.||++|+.+. +.|+||.+++++|++++++.....|++++.+.|+|+||+..+
T Consensus       175 ~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~-s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~v  253 (345)
T KOG2234|consen  175 ESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNV-SLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIV  253 (345)
T ss_pred             CCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHH
Confidence            1223578899999999999999999999999999775 999999999999999999998888888777889999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcCCCC
Q 018904          276 VLMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKL  347 (349)
Q Consensus       276 ~l~i~~~a~~g~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~~~~  347 (349)
                      |+.++.++++|++++.++||+|++.|.++++++++++.+.|+.+||.++|..+++|+.+|+.++++|+..|.
T Consensus       254 w~vVl~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~  325 (345)
T KOG2234|consen  254 WLVVLLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPA  325 (345)
T ss_pred             HHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCc
Confidence            999999999999999999999999999999999999999999999999999999999999999999997664

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=100.00  E-value=1.4e-38  Score=288.33  Aligned_cols=221  Identities=41%  Similarity=0.739  Sum_probs=205.2

Q ss_pred             cccchhhhhhHHHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccC
Q 018904          114 TTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNS  193 (349)
Q Consensus       114 ~~~~~l~~~~i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~  193 (349)
                      .++|+.+++++||++|+++|++.|++++++|++++|++.|+++++||++++++||||++++||.++++.++|+++++.++
T Consensus        12 ~~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~   91 (244)
T PF04142_consen   12 KSPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSS   91 (244)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCC
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999998764


Q ss_pred             CCC------c------ccccchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhchhh
Q 018904          194 NSD------R------VLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDA  261 (349)
Q Consensus       194 ~~~------~------~~~~~~~G~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  261 (349)
                      ...      .      ...+...|+++++++++++|+++||.||++|+.+. ++|.||.|++.+|++++++.....|+++
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~-s~~~~N~qL~~~gi~~~~~~~~~~~~~~  170 (244)
T PF04142_consen   92 SQSSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNV-SLWIQNMQLYLFGILFNLLALLLSDGSA  170 (244)
T ss_pred             ccccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccch-hHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            221      0      02346799999999999999999999999999875 9999999999999999998877778888


Q ss_pred             hhhccccccChHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Q 018904          262 VMNKGFFHGYSFITVLMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVV  335 (349)
Q Consensus       262 ~~~~~~~~~~~~~~~l~i~~~a~~g~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV  335 (349)
                      +.+.|+|+||+.++|..++.++++|+++++++||+|++.|.+++.++++++.++++++||.++|..+++|+.+|
T Consensus       171 ~~~~g~f~G~~~~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V  244 (244)
T PF04142_consen  171 ISESGFFHGYSWWVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV  244 (244)
T ss_pred             cccCCchhhcchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence            88889999999999999999999999999999999999999999999999999999999999999999998764

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.96  E-value=6e-26  Score=216.81  Aligned_cols=287  Identities=14%  Similarity=0.131  Sum_probs=206.2

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhHH
Q 018904           46 RKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIP  125 (349)
Q Consensus        46 ~~~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i~  125 (349)
                      +.|..+++.=+..++..++.|.+-+.   .++|....++|..+..++.+++.+  +++++.   .+.+.+||++..+++.
T Consensus        13 ~~~~~~~~~q~~~~~~~~~~k~a~~~---G~~~~~~~~~R~~iA~l~Ll~~~~--~~~~~~---~~~~~~~~~~~~l~l~   84 (358)
T PLN00411         13 VFLTAMLATETSVVGISTLFKVATSK---GLNIYPFLGYSYLLASLLLLPSLF--FTNRSR---SLPPLSVSILSKIGLL   84 (358)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHC---CCCccHHHHHHHHHHHHHHHHHHH--HHHHhc---ccCcchHHHHHHHHHH
Confidence            35777888788888888898887654   356677889999999888887763  222211   1112346777778888


Q ss_pred             HHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHH------hcCCCchHHHHHHHHHHhhhhhccccCCCC---
Q 018904          126 AVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRII------LKKKLSEIQWAAFILLCCGCTTAQLNSNSD---  196 (349)
Q Consensus       126 ~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~------Lkekls~~qw~gl~l~~~Gv~lv~~~~~~~---  196 (349)
                      |++...++.+.+.|++|+++++++++.++.|++++++++++      +|||++++||+|++++++|+.++..+++..   
T Consensus        85 g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~  164 (358)
T PLN00411         85 GFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFV  164 (358)
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccc
Confidence            88776788899999999999999999999999999999999      699999999999999999999876432110   


Q ss_pred             -----------------cccccchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHH-HHHHHHHHHHHhc
Q 018904          197 -----------------RVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVF-GMAFNAVAIVIQD  258 (349)
Q Consensus       197 -----------------~~~~~~~~G~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~  258 (349)
                                       ....+...|++++++++++||++.++.++..++.++ . ...+.+...+ +..+..+....++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~-~-~~~t~~~~~~~~~~~~~~~l~~~~  242 (358)
T PLN00411        165 ASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPA-A-FTVSFLYTVCVSIVTSMIGLVVEK  242 (358)
T ss_pred             ccccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-H-hHHHHHHHHHHHHHHHHHHHHHcc
Confidence                             001123569999999999999999999999887754 2 2223332333 3333333332221


Q ss_pred             hhhhhhccccccChHHHHHHHHHHHH----HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Q 018904          259 FDAVMNKGFFHGYSFITVLMILNHAL----SGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIV  334 (349)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~l~i~~~a~----~g~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~l  334 (349)
                      .+ ..  .....++... ..+++.++    +..+..+.+++.++...+...++.|++++++|++++||++++.+++|+++
T Consensus       243 ~~-~~--~~~~~~~~~~-~~i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~L  318 (358)
T PLN00411        243 NN-PS--VWIIHFDITL-ITIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGIL  318 (358)
T ss_pred             CC-cc--cceeccchHH-HHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence            11 00  0111122222 22333333    33445556778899999999999999999999999999999999999999


Q ss_pred             HHHHhhhhcCCC
Q 018904          335 VSVSVYLHSAGK  346 (349)
Q Consensus       335 V~~gv~l~~~~~  346 (349)
                      |+.|+++.+..+
T Consensus       319 Il~Gv~l~~~~~  330 (358)
T PLN00411        319 ITLGFYAVMWGK  330 (358)
T ss_pred             HHHHHHHHHhhh
Confidence            999999987543

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.94  E-value=1.4e-24  Score=203.42  Aligned_cols=275  Identities=14%  Similarity=0.131  Sum_probs=191.5

Q ss_pred             hHHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhH
Q 018904           45 KRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPI  124 (349)
Q Consensus        45 ~~~~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i  124 (349)
                      .+++++.++..+.|+.+++.+|..     ++++|.++++.|.+++.++.++++.  .+++. +...+..+++++......
T Consensus         7 ~~g~~~~l~a~~~wg~~~~~~k~~-----~~~~~~~~~~~R~~~a~~~l~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~   78 (296)
T PRK15430          7 RQGVLLALAAYFIWGIAPAYFKLI-----YYVPADEILTHRVIWSFFFMVVLMS--ICRQW-SYLKTLIQTPQKIFMLAV   78 (296)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHH--HHccH-HHHHHHHcCHHHHHHHHH
Confidence            457788888999999999999975     2488999999999998876666552  12111 000011123455444445


Q ss_pred             HHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCCCCcccccchh
Q 018904          125 PAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQ  204 (349)
Q Consensus       125 ~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~~~~~~~~~~~  204 (349)
                      .++....++.++|+|++++|+++++++.++.|+++++++++++|||++++||.|++++++|+.++..+.+ +    ..  
T Consensus        79 ~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~-~----~~--  151 (296)
T PRK15430         79 SAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFG-S----LP--  151 (296)
T ss_pred             HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcC-C----cc--
Confidence            5666788999999999999999999999999999999999999999999999999999999998864321 1    11  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccChHHHHH--HHHHH
Q 018904          205 GWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVL--MILNH  282 (349)
Q Consensus       205 G~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~i~~~  282 (349)
                        .+.++++++||++.++.||..++... .....+.+...++.+....  ...+.....   .........+.  ..+..
T Consensus       152 --~~~l~aa~~~a~~~i~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~g~~t  223 (296)
T PRK15430        152 --IIALGLAFSFAFYGLVRKKIAVEAQT-GMLIETMWLLPVAAIYLFA--IADSSTSHM---GQNPMSLNLLLIAAGIVT  223 (296)
T ss_pred             --HHHHHHHHHHHHHHHHHHhcCCCCch-hHHHHHHHHHHHHHHHHHH--HccCCcccc---cCCcHHHHHHHHHHHHHH
Confidence              35788899999999999886432211 2222222222222222111  011100000   00111111111  11234


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhh
Q 018904          283 ALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLH  342 (349)
Q Consensus       283 a~~g~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~  342 (349)
                      +++..+..+.+++.++...+...+.+|+++.++|++++||++++.+++|+++|+.|+.+.
T Consensus       224 ~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~  283 (296)
T PRK15430        224 TVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIF  283 (296)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            456667778889999999999999999999999999999999999999999998876544

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.94  E-value=5.9e-24  Score=199.41  Aligned_cols=276  Identities=14%  Similarity=0.139  Sum_probs=190.3

Q ss_pred             HHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhHHHH
Q 018904           48 SVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAV  127 (349)
Q Consensus        48 ~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i~~l  127 (349)
                      .++.++..++|+++.+++|..-    ++++|...+++|..+..+..+++.   . +++        ..++.....   |+
T Consensus         6 ~l~~l~~~~~Wg~~~~~~k~~~----~~~~p~~~~~~R~~~a~~~l~~~~---~-~~~--------~~~~~~~~~---g~   66 (299)
T PRK11453          6 GVLALLVVVVWGLNFVVIKVGL----HNMPPLMLAGLRFMLVAFPAIFFV---A-RPK--------VPLNLLLGY---GL   66 (299)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHH----hcCCHHHHHHHHHHHHHHHHHHHh---c-CCC--------CchHHHHHH---HH
Confidence            3456678999999999999864    358999999999988765544433   2 111        112322222   33


Q ss_pred             H-HHHHHHHHHHHHhc-CChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCCCCcccccchhH
Q 018904          128 L-YLVKNLLQYYIFAY-VDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQG  205 (349)
Q Consensus       128 l-~~~~n~l~~~al~~-~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~~~~~~~~~~~G  205 (349)
                      + ...+..+.|.+++| .|++.++++.++.|+++.+++++++|||++++||+|++++++|+.++..++.++  .+....|
T Consensus        67 ~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~--~~~~~~G  144 (299)
T PRK11453         67 TISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNG--QHVAMLG  144 (299)
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCC--cchhHHH
Confidence            2 34566678889998 689999999999999999999999999999999999999999999886432211  1224579


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccChHHHHHHHHHHHHH
Q 018904          206 WIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALS  285 (349)
Q Consensus       206 ~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~a~~  285 (349)
                      ++++++++++++.++++.||..++.+.......+.+....+.+.........+.+.... ..+..++...|..+++.++.
T Consensus       145 ~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~i~  223 (299)
T PRK11453        145 FMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMI-HSLVTIDMTTILSLMYLAFV  223 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhh-hhhccCCHHHHHHHHHHHHH
Confidence            99999999999999999999866543211111112222222211111111112111000 01122344556666666665


Q ss_pred             HHHHHHH-----HHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcCC
Q 018904          286 GIAVSMV-----MKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAG  345 (349)
Q Consensus       286 g~~~~~~-----~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~~  345 (349)
                      ++.+++.     +++.++.+.+....++|+++.++|++++||+++..+++|+++|+.|+++...+
T Consensus       224 ~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~  288 (299)
T PRK11453        224 ATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFG  288 (299)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcc
Confidence            5554444     45667777788889999999999999999999999999999999999886543

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.94  E-value=3e-24  Score=201.53  Aligned_cols=279  Identities=16%  Similarity=0.202  Sum_probs=204.4

Q ss_pred             HHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhHHHHHHHHHH
Q 018904           54 LTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKN  133 (349)
Q Consensus        54 ~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i~~ll~~~~n  133 (349)
                      +.++.++.........+. +.+.| ..-.++.+++-.++-.+.+.  +|+...   +..+..+++.+.+.+.|+++...|
T Consensus        21 lsl~~~~t~~~s~~l~~~-~~~~P-~~Qs~~~Y~~l~~vy~~~~~--~r~~~~---~~~~~~~~~~w~y~lla~~Dv~aN   93 (334)
T PF06027_consen   21 LSLCITGTGTFSSLLANK-GVNIP-TFQSFFNYVLLALVYTPILL--YRRGFK---KWLKVLKRPWWKYFLLALLDVEAN   93 (334)
T ss_pred             HHHHHHhHHHHHHHHHhc-CccCc-HHHHHHHHHHHHHHHhhhhh--hccccc---cchhhcchhHHHHHHHHHHHHHHH
Confidence            455555555555443333 33444 44445555554333333331  333211   111223456678999999999999


Q ss_pred             HHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCCC----CcccccchhHHHHH
Q 018904          134 LLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNS----DRVLQTPLQGWIMA  209 (349)
Q Consensus       134 ~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~~----~~~~~~~~~G~ll~  209 (349)
                      .+.+.|++|++.+.+|++.++.+++++++++++||||+++.|++|++++++|+.++...+..    +...+++..|++++
T Consensus        94 ~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~  173 (334)
T PF06027_consen   94 YLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLA  173 (334)
T ss_pred             HHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHH
Confidence            99999999999999999999999999999999999999999999999999999988765321    11234688999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccChHHHHHHH----HHHHHH
Q 018904          210 IVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMI----LNHALS  285 (349)
Q Consensus       210 l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i----~~~a~~  285 (349)
                      +++++++|+++|++|+..|+.+   ......+++++|.+++.+.....|+++..+.    .|+...+...    +...+.
T Consensus       174 l~~a~lya~~nV~~E~~v~~~~---~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~----~w~~~~~~~~v~~~~~lf~~  246 (334)
T PF06027_consen  174 LLGAILYAVSNVLEEKLVKKAP---RVEFLGMLGLFGFIISGIQLAILERSGIESI----HWTSQVIGLLVGYALCLFLF  246 (334)
T ss_pred             HHHHHHHHHHHHHHHHhcccCC---HHHHHHHHHHHHHHHHHHHHHheehhhhhcc----CCChhhHHHHHHHHHHHHHH
Confidence            9999999999999999998864   3445567788898888876655555444321    1232222221    122334


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcCCC
Q 018904          286 GIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGK  346 (349)
Q Consensus       286 g~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~~~  346 (349)
                      .+.+..++++.++...+....++.+++.++++++||+++++..++|.++|+.|..+|+..+
T Consensus       247 y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~  307 (334)
T PF06027_consen  247 YSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAE  307 (334)
T ss_pred             HHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccC
Confidence            4566778889888888888888999999999999999999999999999999999998654

Some of the sequences in this family are annotated as putative membrane proteins.

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.94  E-value=6.1e-24  Score=198.67  Aligned_cols=271  Identities=14%  Similarity=0.044  Sum_probs=194.9

Q ss_pred             HHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhHHHH
Q 018904           48 SVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAV  127 (349)
Q Consensus        48 ~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i~~l  127 (349)
                      .+.+++.++.|+++.+.+|...    ++.+|.+.+++|..+..++.+++.   ..+++ + ..    ++|+.....+.|.
T Consensus        10 ~~~~~~~~~iWg~~~~~~K~~~----~~~~p~~~~~~R~~~a~l~ll~~~---~~~~~-~-~~----~~~~~~~~~~~g~   76 (292)
T PRK11272         10 FGALFALYIIWGSTYLVIRIGV----ESWPPLMMAGVRFLIAGILLLAFL---LLRGH-P-LP----TLRQWLNAALIGL   76 (292)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHh----ccCCHHHHHHHHHHHHHHHHHHHH---HHhCC-C-CC----cHHHHHHHHHHHH
Confidence            3456678999999999999875    358899999999999988777765   22221 1 11    1233334555565


Q ss_pred             HH-HHHHHHHHHHH-hcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCCCCcccccchhH
Q 018904          128 LY-LVKNLLQYYIF-AYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQG  205 (349)
Q Consensus       128 l~-~~~n~l~~~al-~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~~~~~~~~~~~G  205 (349)
                      +. ..++.+.+++. +++++++++++.++.|+++++++.+ +|||++++||.|++++++|+.++..+++.    +....|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~----~~~~~G  151 (292)
T PRK11272         77 LLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNL----SGNPWG  151 (292)
T ss_pred             HHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCccc----ccchHH
Confidence            53 56788899999 9999999999999999999999985 79999999999999999999988543211    234579


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccChHHHHHHHHHHHHH
Q 018904          206 WIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALS  285 (349)
Q Consensus       206 ~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~a~~  285 (349)
                      +++.+++++++|+++++.||..+++   +......++.. +.+...+.....+..      .....+...|..+++.++.
T Consensus       152 ~l~~l~a~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~------~~~~~~~~~~~~i~~l~i~  221 (292)
T PRK11272        152 AILILIASASWAFGSVWSSRLPLPV---GMMAGAAEMLA-AGVVLLIASLLSGER------LTALPTLSGFLALGYLAVF  221 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCc---chHHHHHHHHH-HHHHHHHHHHHcCCc------ccccCCHHHHHHHHHHHHH
Confidence            9999999999999999999875432   23333333333 333222222221110      0001123344444444443


Q ss_pred             -----HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcCCC
Q 018904          286 -----GIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGK  346 (349)
Q Consensus       286 -----g~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~~~  346 (349)
                           .....+.+|+.++...+...+.+|+++.+++++++||++|..+++|+++|+.|+++.+..+
T Consensus       222 ~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~  287 (292)
T PRK11272        222 GSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGK  287 (292)
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence                 3445556677788888888899999999999999999999999999999999998876543

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.94  E-value=2.6e-23  Score=198.94  Aligned_cols=271  Identities=13%  Similarity=0.110  Sum_probs=187.4

Q ss_pred             HHHHHHhhccCCccch-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHH
Q 018904           62 AILIVWSKRAGKYEYS-VTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIF  140 (349)
Q Consensus        62 ~i~~k~s~~~~~~~~~-~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i~~ll~~~~n~l~~~al  140 (349)
                      .+..|+.-+    +++ |.++..+|.+++.+++..+.   ..+.  ++.++.....++.......|+++...+...+.|+
T Consensus        65 ~~~nK~vl~----~~~~P~~l~~~~~~~~~l~~~~~~---~~~~--~~~~~~~~~~~~~~~llp~gl~~~~~~~~~~~sl  135 (350)
T PTZ00343         65 VVDNKLALN----MLPLPWTISSLQLFVGWLFALLYW---ATGF--RKIPRIKSLKLFLKNFLPQGLCHLFVHFGAVISM  135 (350)
T ss_pred             HHHHHHHHH----hCChhHHHHHHHHHHHHHHHHHHH---HhCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344465532    356 89999999999877655443   1111  1112221112244456677777776667788999


Q ss_pred             hcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCCCCcccccchhHHHHHHHHHHHHHHHH
Q 018904          141 AYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAG  220 (349)
Q Consensus       141 ~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~~~~~~~~~~~G~ll~l~a~~~~al~~  220 (349)
                      ++++++.++++.++.|+++++++++++|||+++++++++++.++||.+...++.     +....|+++++++++++++++
T Consensus       136 ~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~-----~~~~~G~~~~l~s~~~~a~~~  210 (350)
T PTZ00343        136 GLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKEL-----HFTWLAFWCAMLSNLGSSLRS  210 (350)
T ss_pred             hhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccc-----hhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999864321     234679999999999999999


Q ss_pred             HHHHHHhhcCCCC--chHHHHHHH--HHHHHHHHHHHHHHhchhhhhh---c--cccccChH-HHHHHHHHHHHHHHHHH
Q 018904          221 VYTEAIMKKRPSR--NINVQNFWL--YVFGMAFNAVAIVIQDFDAVMN---K--GFFHGYSF-ITVLMILNHALSGIAVS  290 (349)
Q Consensus       221 v~~e~~~k~~~~~--~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~-~~~l~i~~~a~~g~~~~  290 (349)
                      ++.||.+++.+..  +....+.+.  ...|.++.++.....+......   .  .....+.. ..+..++..++.+.+..
T Consensus       211 i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~i~~s~l~~~l~n  290 (350)
T PTZ00343        211 IFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFKIFFSGVWYYLYN  290 (350)
T ss_pred             HHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHH
Confidence            9999998764310  111222222  4456666655544222211000   0  00111111 11222333344444433


Q ss_pred             ----HHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcCCC
Q 018904          291 ----MVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGK  346 (349)
Q Consensus       291 ----~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~~~  346 (349)
                          +.+++.++...+...++.+++++++|+++|||++|+.+++|.++++.|+++|+.-|
T Consensus       291 ~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~k  350 (350)
T PTZ00343        291 EVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLFK  350 (350)
T ss_pred             HHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhcC
Confidence                36777888999999999999999999999999999999999999999999998753

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.94  E-value=8.6e-24  Score=197.92  Aligned_cols=270  Identities=13%  Similarity=0.104  Sum_probs=190.5

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhHH
Q 018904           46 RKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIP  125 (349)
Q Consensus        46 ~~~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i~  125 (349)
                      +.++++++.++.|+++.+..|..-    ++++|....++|..+..++.+++.    ++.      +.++.++..  ....
T Consensus         4 ~~~l~~l~a~~~Wg~~~~~~k~~~----~~~~P~~~~~~R~~~a~l~l~~~~----~~~------~~~~~~~~~--~~~~   67 (295)
T PRK11689          4 KATLIGLIAILLWSTMVGLIRGVS----ESLGPVGGAAMIYSVSGLLLLLTV----GFP------RLRQFPKRY--LLAG   67 (295)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHH----ccCChHHHHHHHHHHHHHHHHHHc----ccc------ccccccHHH--HHHH
Confidence            456778889999999999999875    468999999999988877665542    111      111112221  2233


Q ss_pred             HHHHHHHHHHHHHHHh----cCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCCCCc----
Q 018904          126 AVLYLVKNLLQYYIFA----YVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDR----  197 (349)
Q Consensus       126 ~ll~~~~n~l~~~al~----~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~~~~----  197 (349)
                      ++.+..++.+.|.+++    ++++++++++.++.|+++++++++++|||++++||.|++++++|+.++..++....    
T Consensus        68 ~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~  147 (295)
T PRK11689         68 GLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAEL  147 (295)
T ss_pred             hHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhh
Confidence            4446678888888775    46888999999999999999999999999999999999999999998865432110    


Q ss_pred             --ccccchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccChHHH
Q 018904          198 --VLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFIT  275 (349)
Q Consensus       198 --~~~~~~~G~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (349)
                        ...+...|+++++.++++||+++++.||..++.+.  ..   ......+.. ..+.....+ +..      ...+...
T Consensus       148 ~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~~~--~~---~~~~~~~~~-l~~~~~~~~-~~~------~~~~~~~  214 (295)
T PRK11689        148 INNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGKNG--IT---LFFILTALA-LWIKYFLSP-QPA------MVFSLPA  214 (295)
T ss_pred             hhccccChHHHHHHHHHHHHHHHHHHHHhhccCCCCc--hh---HHHHHHHHH-HHHHHHHhc-Ccc------ccCCHHH
Confidence              01123569999999999999999999998655442  21   111112222 222112211 110      1122233


Q ss_pred             HHHHHHH----HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcC
Q 018904          276 VLMILNH----ALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSA  344 (349)
Q Consensus       276 ~l~i~~~----a~~g~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~  344 (349)
                      |..+++.    +++..+..+.+|+.++...+...+..|+++.+++++++||+++..+++|+++|+.|+++...
T Consensus       215 ~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~  287 (295)
T PRK11689        215 IIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL  287 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence            3333332    33344556677888889899999999999999999999999999999999999999865543

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.93  E-value=1.8e-23  Score=196.42  Aligned_cols=273  Identities=13%  Similarity=0.152  Sum_probs=187.0

Q ss_pred             HhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhHHHHHHHHHHHHHH
Q 018904           58 TSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQY  137 (349)
Q Consensus        58 ~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i~~ll~~~~n~l~~  137 (349)
                      ..+..+..|+.-++  .+ .|.+..++|...+.+.+.+..    +... .+  +.+.++|+.......|+++..++.+.+
T Consensus        14 ~~~~~~~NK~~l~~--~~-~P~~~~~~~~~~~~~~~~~~~----~~~~-~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~   83 (302)
T TIGR00817        14 NVYFNIYNKKLLNV--FP-YPYFKTLISLAVGSLYCLLSW----SSGL-PK--RLKISSALLKLLLPVAIVHTIGHVTSN   83 (302)
T ss_pred             HHHHHHHHHHHHhh--CC-hhHHHHHHHHHHHHHHHHHHH----HhCC-CC--CCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344556766432  22 368888899888766554432    1111 11  112235566667778888888999999


Q ss_pred             HHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCCCCcccccchhHHHHHHHHHHHHH
Q 018904          138 YIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSG  217 (349)
Q Consensus       138 ~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~~~~~~~~~~~G~ll~l~a~~~~a  217 (349)
                      ++++|+++++++++.++.|+++++++++++|||+++++|.|++++++|+.+...++     .+....|++++++++++++
T Consensus        84 ~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~-----~~~~~~G~~~~l~a~~~~a  158 (302)
T TIGR00817        84 VSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTE-----LSFNWAGFLSAMISNITFV  158 (302)
T ss_pred             HHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCc-----ccccHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998764221     1234679999999999999


Q ss_pred             HHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccc---cCh-HHHHHHHHHHHHHH-----HH
Q 018904          218 FAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFH---GYS-FITVLMILNHALSG-----IA  288 (349)
Q Consensus       218 l~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~l~i~~~a~~g-----~~  288 (349)
                      ++.++.||..++++. +....+.+....+.++.++.....+..+........   ..+ ...+...+..+++.     ..
T Consensus       159 ~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (302)
T TIGR00817       159 SRNIFSKKAMTIKSL-DKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQV  237 (302)
T ss_pred             HHHHHHHHhhccCCC-CcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHH
Confidence            999999998873221 222333444455555555544332211110000000   001 11222122222211     12


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcCCC
Q 018904          289 VSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGK  346 (349)
Q Consensus       289 ~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~~~  346 (349)
                      ..+.+++.++.+.+......|++++++|++++||++|..+++|+++++.|+++|++.|
T Consensus       238 ~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k  295 (302)
T TIGR00817       238 AFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVK  295 (302)
T ss_pred             HHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHh
Confidence            2246788899999999999999999999999999999999999999999999998654

specificities overlap.

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.92  E-value=8.5e-23  Score=187.29  Aligned_cols=254  Identities=13%  Similarity=0.089  Sum_probs=185.2

Q ss_pred             HhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhHHHHHHHHHHHHHH
Q 018904           58 TSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQY  137 (349)
Q Consensus        58 ~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i~~ll~~~~n~l~~  137 (349)
                      |+.+.+..|+.-+   ...|+.++.+.|.+...++..+..   +++ .      .+++|+.  .....++...+++.+.+
T Consensus         1 Wg~~~~~~k~~~~---~~~~~~~~~~~r~~~~~l~l~~~~---~~~-~------~~~~~~~--~~~~~~~~~~l~~~~~~   65 (260)
T TIGR00950         1 WGTTGVVIGQYLE---GQVPLYFAVFRRLIFALLLLLPLL---RRR-P------PLKRLLR--LLLLGALQIGVFYVLYF   65 (260)
T ss_pred             CcchHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHH---Hhc-c------CHhHHHH--HHHHHHHHHHHHHHHHH
Confidence            6788889998643   246788999999888877666654   222 1      1112222  23333344678999999


Q ss_pred             HHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCCCCcccccchhHHHHHHHHHHHHH
Q 018904          138 YIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSG  217 (349)
Q Consensus       138 ~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~~~~~~~~~~~G~ll~l~a~~~~a  217 (349)
                      +|++|+|+++.+++.++.|+++++++.+++|||++++||.|++++++|+.++..+++.    +....|+++.+.++++++
T Consensus        66 ~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~----~~~~~G~~~~l~a~~~~a  141 (260)
T TIGR00950        66 VAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNL----SINPAGLLLGLGSGISFA  141 (260)
T ss_pred             HHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcc----cccHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999988654321    245689999999999999


Q ss_pred             HHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccChHHHHH-----HHHHHHHHHHHHHHH
Q 018904          218 FAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVL-----MILNHALSGIAVSMV  292 (349)
Q Consensus       218 l~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----~i~~~a~~g~~~~~~  292 (349)
                      .++++.|+..++.+. +....+.+....+.++..+.....+...     .   .+...|.     .++...++..+..+.
T Consensus       142 ~~~~~~k~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~a  212 (260)
T TIGR00950       142 LGTVLYKRLVKKEGP-ELLQFTGWVLLLGALLLLPFAWFLGPNP-----Q---ALSLQWGALLYLGLIGTALAYFLWNKG  212 (260)
T ss_pred             HHHHHHhHHhhcCCc-hHHHHHHHHHHHHHHHHHHHHHhcCCCC-----C---cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998876553 2222222223344444443332221110     0   1222232     223334455556667


Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHh
Q 018904          293 MKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSV  339 (349)
Q Consensus       293 ~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv  339 (349)
                      +|+.++...+...+.+|+++.+++++++||+++..+++|.++++.|+
T Consensus       213 ~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       213 LTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            88888888899999999999999999999999999999999999986

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.92  E-value=2.8e-22  Score=187.53  Aligned_cols=269  Identities=12%  Similarity=-0.026  Sum_probs=193.0

Q ss_pred             hhhHHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhh
Q 018904           43 NWKRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVY  122 (349)
Q Consensus        43 ~~~~~~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~  122 (349)
                      ...+++.++++.++.|+.+.+++|+.-    .+++|.+.+++|.++..++.+++.   .+++.     +.  ++|+....
T Consensus         9 ~~~~~~~~~~la~~~~~~~~~~~K~~~----~~~~~~~~~~~R~~~a~l~l~~~~---~~~~~-----~~--~~~~~~~~   74 (293)
T PRK10532          9 PVWLPILLLLIAMASIQSGASLAKSLF----PLVGAPGVTALRLALGTLILIAIF---KPWRL-----RF--AKEQRLPL   74 (293)
T ss_pred             ccchHHHHHHHHHHHHHhhHHHHHHHH----HHcCHHHHHHHHHHHHHHHHHHHH---hHHhc-----cC--CHHHHHHH
Confidence            336788999999999999999999875    358999999999999987776654   22211     11  12333335


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCCCCcccccc
Q 018904          123 PIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTP  202 (349)
Q Consensus       123 ~i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~~~~~~~~~  202 (349)
                      ...|+++...+.+.|++++|+|++.+.++.++.|+++++++.    ||.++  +.++.++++|+.++..++.+.  .+..
T Consensus        75 ~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~~--~~~~~i~~~Gv~li~~~~~~~--~~~~  146 (293)
T PRK10532         75 LFYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPVD--FVWVVLAVLGLWFLLPLGQDV--SHVD  146 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChHH--HHHHHHHHHHHheeeecCCCc--ccCC
Confidence            556667788899999999999999999999999999998873    55554  455677899998875332111  1234


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccChHH-----HHH
Q 018904          203 LQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFI-----TVL  277 (349)
Q Consensus       203 ~~G~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l  277 (349)
                      ..|+++.+++++++|++.++.||..++.+.  . ....+ ...+.+...+.....+.+.        .++..     .++
T Consensus       147 ~~G~ll~l~aa~~~a~~~v~~r~~~~~~~~--~-~~~~~-~~~~~~~l~~~~~~~~~~~--------~~~~~~~~~~l~l  214 (293)
T PRK10532        147 LTGAALALGAGACWAIYILSGQRAGAEHGP--A-TVAIG-SLIAALIFVPIGALQAGEA--------LWHWSILPLGLAV  214 (293)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhccCCc--h-HHHHH-HHHHHHHHHHHHHHccCcc--------cCCHHHHHHHHHH
Confidence            579999999999999999999998766543  2 22332 2333333333222211100        01222     233


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcCC
Q 018904          278 MILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAG  345 (349)
Q Consensus       278 ~i~~~a~~g~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~~  345 (349)
                      .++.+.++..+..+.+++.++...+...+.+|+++.++|++++||+++..+++|+++|+.|+..+...
T Consensus       215 gv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~  282 (293)
T PRK10532        215 AILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLT  282 (293)
T ss_pred             HHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence            34444455556667778889999999999999999999999999999999999999999999887643

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.90  E-value=1e-20  Score=177.82  Aligned_cols=260  Identities=21%  Similarity=0.323  Sum_probs=197.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHhcCChHHHHHHhhhHH
Q 018904           77 SVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNI  156 (349)
Q Consensus        77 ~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~p  156 (349)
                      .|..+.+...+...+++.+..   ...+.  + +   .+.+....+.+.++++.+++.+.+.+++|+|.++.+++++++|
T Consensus        31 ~~~~lt~~q~~~~~~~~~~~~---~~~~~--~-~---~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~  101 (303)
T PF08449_consen   31 FPLFLTFVQFAFNALFSFILL---SLFKF--P-K---SRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKP  101 (303)
T ss_pred             ccHHHHHHHHHHHHHHHHHHH---Hhccc--c-C---CCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHH
Confidence            368888888888777777665   22211  1 1   1123344578889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCCCCccc-----ccchhHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 018904          157 ISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVL-----QTPLQGWIMAIVMALLSGFAGVYTEAIMKKRP  231 (349)
Q Consensus       157 l~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~~~~~~-----~~~~~G~ll~l~a~~~~al~~v~~e~~~k~~~  231 (349)
                      +++++++++++|||++++||.++++.++|+++....+..+...     .....|+++++++.++.|+.++++||..++++
T Consensus       102 i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~  181 (303)
T PF08449_consen  102 IPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAFTGVYQEKLFKKYG  181 (303)
T ss_pred             HHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999987654322111     11234999999999999999999999999887


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHH---hchhhhhhccccccChHHHH---HHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 018904          232 SRNINVQNFWLYVFGMAFNAVAIVI---QDFDAVMNKGFFHGYSFITV---LMILNHALSGIAVSMVMKYADNIVKVYST  305 (349)
Q Consensus       232 ~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---l~i~~~a~~g~~~~~~~k~~~~i~~~~~~  305 (349)
                      . +.+...++...++.++..+....   .+..+..  .+...++...+   +..+..+++...+.+..+..++...+...
T Consensus       182 ~-~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~--~f~~~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~  258 (303)
T PF08449_consen  182 K-SPWELMFYTNLFSLPFLLILLFLLPTGEFRSAI--RFISAHPSVLLYLLLFSLTGALGQFFIFYLIKKFSALTTTIVT  258 (303)
T ss_pred             C-cHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHH
Confidence            6 55666677778888777665543   1111110  11111111111   12234455556667778889999999999


Q ss_pred             HHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcCCCCC
Q 018904          306 SVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKLQ  348 (349)
Q Consensus       306 ~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~~~~~  348 (349)
                      +++.+++.++|+++||+++++.+++|.++++.|+.+|+..+++
T Consensus       259 t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k  301 (303)
T PF08449_consen  259 TLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKK  301 (303)
T ss_pred             HHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhcc
Confidence            9999999999999999999999999999999999999876543

; GO: 0055085 transmembrane transport

>TIGR00803 nst UDP-galactose transporter

Probab=99.90  E-value=1.9e-22  Score=181.18  Aligned_cols=219  Identities=29%  Similarity=0.445  Sum_probs=193.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCCCC--ccc
Q 018904          122 YPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSD--RVL  199 (349)
Q Consensus       122 ~~i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~~~--~~~  199 (349)
                      +.+|+..|+.+|.+.++++.+.++...+.. +.+.+.++++....++++++..||.++.....|+..++.++..+  ...
T Consensus         2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~-~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~   80 (222)
T TIGR00803         2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVT-QLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMF   80 (222)
T ss_pred             ccccchHHHHhcchHHHHHhcccccceeee-hHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCcccccc
Confidence            568899999999999999999999999999 99999999999999999999999999999999999887654321  112


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccChHHHHHHH
Q 018904          200 QTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMI  279 (349)
Q Consensus       200 ~~~~~G~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i  279 (349)
                      ++...|..+.+.+++++++.++|+|+..|+++. ..+.+++++..++.+.+.......+.+...+.+++++++...|..+
T Consensus        81 g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (222)
T TIGR00803        81 GNPVVGLSAVLSALLSSGFAGVYFEKILKDGDT-MFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVG  159 (222)
T ss_pred             ccHHHHHHHHHHHHHHHhhhHHHHHHcccCCCC-chHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHHH
Confidence            356789999999999999999999998877654 7899999999999887665544445554555567788899999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhh
Q 018904          280 LNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLH  342 (349)
Q Consensus       280 ~~~a~~g~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~  342 (349)
                      +.+++++.++++++||.|++.+++...++++++.++|+++|||+++..+++|+.+|+.|+++|
T Consensus       160 ~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY  222 (222)
T TIGR00803       160 LLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY  222 (222)
T ss_pred             HHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence            999999999999999999999999999999999999999999999999999999999999886

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=99.88  E-value=1.7e-20  Score=166.56  Aligned_cols=289  Identities=19%  Similarity=0.255  Sum_probs=204.3

Q ss_pred             HHHHHHHHHhHHHHHHHHhhc---cC----CccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC-------ccccc
Q 018904           50 VTLALTVLTSSQAILIVWSKR---AG----KYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDN-------RLSTT  115 (349)
Q Consensus        50 ~l~~~~~~~s~~~i~~k~s~~---~~----~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~-------~~~~~  115 (349)
                      +-++.+.-.+.|.++.||+.+   +|    ++++-....+|+.|+.++.+-..+-   .+..++....       +.+..
T Consensus         7 ls~imvvsGs~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir---~~sn~~g~~s~~~~ilsq~~~p   83 (372)
T KOG3912|consen    7 LSLIMVVSGSFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIR---LRSNGQGVSSDLDSILSQDSSP   83 (372)
T ss_pred             hhhhhhhhccHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHH---HhhcCCCcccccccccccccCC
Confidence            444567778889999999864   22    4566778899999999766544333   2322221111       11122


Q ss_pred             cchhhhhhHHHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccC--
Q 018904          116 LDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNS--  193 (349)
Q Consensus       116 ~~~l~~~~i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~--  193 (349)
                      .+. ..+..|++++.....+.|.|+.+++++.+|+++...++||++++..+||++++.+||+|+....+|++++...+  
T Consensus        84 f~p-~lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~  162 (372)
T KOG3912|consen   84 FNP-VLFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVH  162 (372)
T ss_pred             CCc-ceecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecc
Confidence            333 34666999999999999999999999999999999999999999999999999999999999999999997542  


Q ss_pred             -CCC--cccccchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHH-HHHHH---Hhchhhhh--h
Q 018904          194 -NSD--RVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFN-AVAIV---IQDFDAVM--N  264 (349)
Q Consensus       194 -~~~--~~~~~~~~G~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~-~~~~~---~~~~~~~~--~  264 (349)
                       .++  +..++...|+++++.+.+.-|+..|+.||.+|+++..|... .-+-..+|.++. ++...   ...+++..  .
T Consensus       163 ~~~~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~a-vg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~  241 (372)
T KOG3912|consen  163 LVTDPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQA-VGWEGLFGLVILSLLAIPMYYIPSGDSFSCNP  241 (372)
T ss_pred             cccCCccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHH-hhhhhhHHHHHHHHHHHHHhheecCCcCcCCC
Confidence             111  22356789999999999999999999999999987634433 344567774433 32221   11111100  0


Q ss_pred             ccccccChHHHHH-----HHHHHHHHHHHH---------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHH
Q 018904          265 KGFFHGYSFITVL-----MILNHALSGIAV---------SMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFL  330 (349)
Q Consensus       265 ~~~~~~~~~~~~l-----~i~~~a~~g~~~---------~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~l  330 (349)
                      .|.+..+.. .|.     ..+..++++..+         -.+.|+.++..+.....++..+.++++..+..|.+...|+.
T Consensus       242 ~g~~eD~~~-~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqil  320 (372)
T KOG3912|consen  242 RGVLEDWGD-AFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQIL  320 (372)
T ss_pred             CcchhhHHH-HHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHH
Confidence            111111110 000     001122222222         24568888888989999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhcC
Q 018904          331 GSIVVSVSVYLHSA  344 (349)
Q Consensus       331 G~~lV~~gv~l~~~  344 (349)
                      |.++.+.|+.+||.
T Consensus       321 GFliLi~Gi~lY~~  334 (372)
T KOG3912|consen  321 GFLILIMGIILYNQ  334 (372)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999999985

>TIGR00688 rarD rarD protein

Probab=99.88  E-value=2.4e-20  Score=171.01  Aligned_cols=250  Identities=14%  Similarity=0.056  Sum_probs=167.8

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccc-cccc-hhhhhh
Q 018904           46 RKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLS-TTLD-EVIVYP  123 (349)
Q Consensus        46 ~~~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~-~~~~-~l~~~~  123 (349)
                      ++++++++..+.|+.+++++|..     .+++|.++++.|.+++.++.+++..  .++++....++.+ .+++ +.....
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~~-----~~~~~~~i~~~R~~~a~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~   74 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKLL-----KPLPATDILGHRMIWSFPFMLLSVT--LFRQWAALIERLKRIQKRPLILSLL   74 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHh-----ccCCHHHHHHHHHHHHHHHHHHHHH--HHcchHHHHHHHhCcccchHHHHHH
Confidence            46677888999999999999984     2489999999999998776555442  1111100001111 1122 233567


Q ss_pred             HHHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCCCCcccccch
Q 018904          124 IPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPL  203 (349)
Q Consensus       124 i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~~~~~~~~~~  203 (349)
                      +.|++...++.++++|++++++++++++.++.|+++++++++++|||++++||++++++++|++++..++. +    .. 
T Consensus        75 ~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~-~----~~-  148 (256)
T TIGR00688        75 LCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKG-S----LP-  148 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcC-C----ch-
Confidence            77888889999999999999999999999999999999999999999999999999999999998754321 1    11 


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccChHHHHHH--HHH
Q 018904          204 QGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLM--ILN  281 (349)
Q Consensus       204 ~G~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--i~~  281 (349)
                         .+.+++++++|.+.++.|+..++ +. .   +.........++........++....+   ......+.++.  .+.
T Consensus       149 ---~~~l~aa~~~a~~~i~~~~~~~~-~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~g~~  217 (256)
T TIGR00688       149 ---WEALVLAFSFTAYGLIRKALKNT-DL-A---GFCLETLSLMPVAIYYLLQTDFATVQQ---TNPFPIWLLLVLAGLI  217 (256)
T ss_pred             ---HHHHHHHHHHHHHHHHHhhcCCC-Cc-c---hHHHHHHHHHHHHHHHHHHhccCcccc---cCchhHHHHHHHHHHH
Confidence               34688999999999999886442 21 1   111101111222221111112111000   00111112211  123


Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 018904          282 HALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFL  319 (349)
Q Consensus       282 ~a~~g~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~l  319 (349)
                      .+++..+..+.+|+.++...+...+++|+++.++++++
T Consensus       218 t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       218 TGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            44566677788899999999999999999999999764

This uncharacterized protein is predicted to have many membrane-spanning domains.

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.87  E-value=3.3e-20  Score=172.51  Aligned_cols=270  Identities=11%  Similarity=0.067  Sum_probs=174.0

Q ss_pred             HHHHHHHHHHhHHHHHHH-HhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhHHHH
Q 018904           49 VVTLALTVLTSSQAILIV-WSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAV  127 (349)
Q Consensus        49 ~~l~~~~~~~s~~~i~~k-~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i~~l  127 (349)
                      ++-++..+.++...+..| .+++     .++.+  +.+.....++.+|+.   ..+....+++..+  ++........++
T Consensus         4 ~~~~~aa~~~a~~~~~~k~~~~~-----~~~~~--~~~~~~~~~~l~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~   71 (281)
T TIGR03340         4 TLVVFSALMHAGWNLMAKSHADK-----EPDFL--WWALLAHSVLLTPYG---LWYLAQVGWSRLP--ATFWLLLAISAV   71 (281)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCc-----hhHHH--HHHHHHHHHHHHHHH---HHhcccCCCCCcc--hhhHHHHHHHHH
Confidence            455667888888888888 4432     22332  444444555555554   2211111111111  122223455566


Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCCCCcccccchhHHH
Q 018904          128 LYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWI  207 (349)
Q Consensus       128 l~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~~~~~~~~~~~G~l  207 (349)
                      ....++.+.+.|+++.|+++.+.+.++.|+++++++++++|||++++||.|+.+++.|+.++..++..    +....|+.
T Consensus        72 ~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~----~~~~~g~~  147 (281)
T TIGR03340        72 ANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFA----QHRRKAYA  147 (281)
T ss_pred             HHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccccc----ccchhHHH
Confidence            67899999999999999999999999999999999999999999999999999999999987654321    12346888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHH-HHHHHH---hchhhhhhccccccChH--HHHHHHHH
Q 018904          208 MAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFN-AVAIVI---QDFDAVMNKGFFHGYSF--ITVLMILN  281 (349)
Q Consensus       208 l~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~--~~~l~i~~  281 (349)
                      +.++++++++++++..|+..++.++  . ....+....+.+.. .+....   .+.....    ......  ..+...+.
T Consensus       148 ~~l~aal~~a~~~i~~k~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~  220 (281)
T TIGR03340       148 WALAAALGTAIYSLSDKAAALGVPA--F-YSALGYLGIGFLAMGWPFLLLYLKRHGRSMF----PYARQILPSATLGGLM  220 (281)
T ss_pred             HHHHHHHHHHHhhhhccccccchhc--c-cccHHHHHHHHHHHHHHHHHHHHHHhccchh----hhHHHHHHHHHHHHHH
Confidence            8999999999999988876443322  1 00111111222221 111111   1111000    000011  12222233


Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhh
Q 018904          282 HALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYL  341 (349)
Q Consensus       282 ~a~~g~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l  341 (349)
                      .+++..+..+.+++.++...+...+.+|+++.++|++++||+++..+++|+++|+.|+++
T Consensus       221 s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       221 IGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            334445555667777776667777889999999999999999999999999999999875

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.86  E-value=1.4e-18  Score=160.92  Aligned_cols=283  Identities=16%  Similarity=0.151  Sum_probs=189.5

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhHH
Q 018904           46 RKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIP  125 (349)
Q Consensus        46 ~~~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i~  125 (349)
                      ......+...+.|+......|....+   +.++....+.|.+....+..+..   .++..    .+.+..++..+.....
T Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~   76 (292)
T COG0697           7 LGLLALLLWGLLWGLSFIALKLAVES---LDPFLFAAALRFLIAALLLLPLL---LLEPR----GLRPALRPWLLLLLLA   76 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcc---cCChHHHHHHHHHHHHHHHHHHH---Hhhcc----cccccccchHHHHHHH
Confidence            34556666778899998888876532   45667777778888776633333   22111    0111111122334555


Q ss_pred             HHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHH-HHhcCCCchHHHHHHHHHHhhhhhccccCCCCcccccchh
Q 018904          126 AVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYR-IILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQ  204 (349)
Q Consensus       126 ~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~-~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~~~~~~~~~~~  204 (349)
                      ++....++.+.+.++++++++.++++.++.|++++++++ +++|||+++++|.+++++++|+.++..++..+. .+ ...
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~-~~-~~~  154 (292)
T COG0697          77 LLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGG-IL-SLL  154 (292)
T ss_pred             HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcch-hH-HHH
Confidence            566788999999999999999999999999999999997 677999999999999999999999987643221 11 578


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccChHHHHHHHHHHHH
Q 018904          205 GWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHAL  284 (349)
Q Consensus       205 G~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~a~  284 (349)
                      |+.+.+++++++|++.++.|+.. +.+.  ......... .+...........+..   .......+....+..++..++
T Consensus       155 g~~~~l~a~~~~a~~~~~~~~~~-~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~i  227 (292)
T COG0697         155 GLLLALAAALLWALYTALVKRLS-RLGP--VTLALLLQL-LLALLLLLLFFLSGFG---APILSRAWLLLLYLGVFSTGL  227 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc-CCCh--HHHHHHHHH-HHHHHHHHHHHhcccc---ccCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999887 3322  111110111 1111111111111110   000000111122223333334


Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcCCCC
Q 018904          285 SGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGKL  347 (349)
Q Consensus       285 ~g~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~~~~  347 (349)
                      +..+..+.++..++...+......++++.+++++++||+++..+++|.++++.|+.+.+.+++
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~~~  290 (292)
T COG0697         228 AYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLRAR  290 (292)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcccc
Confidence            455556667777777777777899999999999999999999999999999999998876643

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.70  E-value=1.5e-17  Score=147.11  Aligned_cols=269  Identities=10%  Similarity=0.102  Sum_probs=176.2

Q ss_pred             HHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCccccccchhhhhhHHHHH
Q 018904           50 VTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGV-TDDNRLSTTLDEVIVYPIPAVL  128 (349)
Q Consensus        50 ~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~i~~ll  128 (349)
                      ++...-++.+++.+..|...      .+|-+..-.|.+..+++.+|.+.  +++... .+..  +  ++.   +.++|+.
T Consensus        42 l~~vs~ff~~~~vv~t~~~e------~~p~e~a~~r~l~~mlit~pcli--y~~~~v~gp~g--~--R~~---LiLRg~m  106 (346)
T KOG4510|consen   42 LLTVSYFFNSCMVVSTKVLE------NDPMELASFRLLVRMLITYPCLI--YYMQPVIGPEG--K--RKW---LILRGFM  106 (346)
T ss_pred             ehhhHHHHhhHHHhhhhhhc------cChhHhhhhhhhhehhhhheEEE--EEeeeeecCCC--c--EEE---EEeehhh
Confidence            33334445555555555554      44666777777777777777652  232221 1111  1  111   3455666


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCC----C---Cc--cc
Q 018904          129 YLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSN----S---DR--VL  199 (349)
Q Consensus       129 ~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~----~---~~--~~  199 (349)
                      .+....+.|+|++|++.+.+.++..+.|.+|.++++.+||||.|+..-++..+.+.||+++..++.    .   +.  .-
T Consensus       107 G~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~  186 (346)
T KOG4510|consen  107 GFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQV  186 (346)
T ss_pred             hhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccc
Confidence            677778999999999999999999999999999999999999999999999999999999977631    1   00  11


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHHHHHHHHHHH-hchhhhhhccccccChHHHHH
Q 018904          200 QTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPS-RNINVQNFWLYVFGMAFNAVAIVI-QDFDAVMNKGFFHGYSFITVL  277 (349)
Q Consensus       200 ~~~~~G~ll~l~a~~~~al~~v~~e~~~k~~~~-~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l  277 (349)
                      .....|....+.++++.|--.++.|++-|+.+. .+.+    +....+.+..++.... .+++ .+..    +-+++...
T Consensus       187 ~~~~~gt~aai~s~lf~asvyIilR~iGk~~h~~msvs----yf~~i~lV~s~I~~~~ig~~~-lP~c----gkdr~l~~  257 (346)
T KOG4510|consen  187 EYDIPGTVAAISSVLFGASVYIILRYIGKNAHAIMSVS----YFSLITLVVSLIGCASIGAVQ-LPHC----GKDRWLFV  257 (346)
T ss_pred             cccCCchHHHHHhHhhhhhHHHHHHHhhccccEEEEeh----HHHHHHHHHHHHHHhhcccee-cCcc----ccceEEEE
Confidence            245688888888888888888888888777542 1222    1222333333333221 1211 1111    11111111


Q ss_pred             HHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhh
Q 018904          278 MIL-NHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLH  342 (349)
Q Consensus       278 ~i~-~~a~~g~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~  342 (349)
                      .+. ..-++++++...+..-.+-..+...+...+++.++.+++|||.||++.++|+++|+.+....
T Consensus       258 ~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~  323 (346)
T KOG4510|consen  258 NLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWV  323 (346)
T ss_pred             EehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHH
Confidence            111 22234566666665555556677888999999999999999999999999999999887543

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.69  E-value=3.1e-14  Score=128.56  Aligned_cols=256  Identities=16%  Similarity=0.242  Sum_probs=200.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHhcCChHHHHHHhhhHH
Q 018904           77 SVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNI  156 (349)
Q Consensus        77 ~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~p  156 (349)
                      ++..++|...+.+++++..++.  +++.   +.    ...+.++.+...++.+.+...++|.|++|++-++..+-.+++.
T Consensus        50 ~~~fL~~~q~l~~~~~s~~~l~--~~k~---~~----~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKm  120 (327)
T KOG1581|consen   50 HSLFLVFCQRLVALLVSYAMLK--WWKK---EL----SGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKM  120 (327)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHh--cccc---cC----CCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhh
Confidence            5678899999999999877663  2221   11    1223455678888889999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCCCC----cccccchhHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 018904          157 ISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSD----RVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPS  232 (349)
Q Consensus       157 l~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~~~----~~~~~~~~G~ll~l~a~~~~al~~v~~e~~~k~~~~  232 (349)
                      +.++++..++.|+|++..+.+...+...||.+....++++    ....+..+|++++...-++.|+.+..++++.|+...
T Consensus       121 IPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~  200 (327)
T KOG1581|consen  121 IPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKYKV  200 (327)
T ss_pred             hHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccCCc
Confidence            9999999999999999999999999999999887553322    122367899999999999999999999999997654


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccChHHHH---HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 018904          233 RNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITV---LMILNHALSGIAVSMVMKYADNIVKVYSTSVAM  309 (349)
Q Consensus       233 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~i~~~a~~g~~~~~~~k~~~~i~~~~~~~~~~  309 (349)
                       +.+.+.+.+..++.+.+....+.. +.-.....|...+....+   +.-.+.++|+..+.+.++..++++-.....++-
T Consensus       201 -s~~~mM~~vNLf~~i~~~~~li~q-g~~~~av~F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk  278 (327)
T KOG1581|consen  201 -SSLHMMFGVNLFSAILNGTYLILQ-GHLLPAVSFIKEHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRK  278 (327)
T ss_pred             -cHhHHHHHHHHHHHHHHHHhhhcC-CCCchHHHHHHcChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHH
Confidence             666667777888888888775422 110000112222222222   233456778888889999999998888889999


Q ss_pred             HHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhc
Q 018904          310 LLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHS  343 (349)
Q Consensus       310 v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~  343 (349)
                      +++.++|.++||+++++.|++|..+|+.|+++-.
T Consensus       279 ~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~  312 (327)
T KOG1581|consen  279 MVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEI  312 (327)
T ss_pred             HHHHHHHHHHhCCccchhhccCeeeehHHHHHHH
Confidence            9999999999999999999999999999987543

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.67  E-value=1.8e-15  Score=131.69  Aligned_cols=221  Identities=15%  Similarity=0.178  Sum_probs=169.4

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCCC--Cc
Q 018904          120 IVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNS--DR  197 (349)
Q Consensus       120 ~~~~i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~~--~~  197 (349)
                      +.|+..+..|.++....+.|+||+|-++..+-.+++|+-++++.+++.++++++++..++++.++||++....+..  +.
T Consensus        86 ~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~  165 (337)
T KOG1580|consen   86 KMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGA  165 (337)
T ss_pred             hHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCC
Confidence            4688888899999999999999999999999999999999999999999999999999999999999998876432  12


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccChHHHH-
Q 018904          198 VLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITV-  276 (349)
Q Consensus       198 ~~~~~~~G~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  276 (349)
                      ..+....|.++.+++-...++.+..++++.+.+.... .-+...+.+++.+.....+++ .++.-.-.-|.+.++...| 
T Consensus       166 e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g-~~MM~~~NlwStL~Lg~g~lf-TGElweF~yF~~RhP~~~~~  243 (337)
T KOG1580|consen  166 EDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTG-TSMMFYTNLWSTLYLGAGLLF-TGELWEFFYFVQRHPYVFWD  243 (337)
T ss_pred             cccccchHHHHHHHHHHhcccchhHHHHHHHhhccCc-hhhHHHHHHHHHHHhhhhhee-hhhHHHHHHHHHhccHHHHH
Confidence            2346789999999999999999999999877755422 223345566777666554432 1110000001111221111 


Q ss_pred             --HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhh
Q 018904          277 --LMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLH  342 (349)
Q Consensus       277 --l~i~~~a~~g~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~  342 (349)
                        +.-+..++|.+++.....+.+....+..++.+..|+++.|+++|+++++..||+|..+|+.+...=
T Consensus       244 l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D  311 (337)
T KOG1580|consen  244 LTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTAD  311 (337)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhH
Confidence              122345667787777777888888888888999999999999999999999999999999998643

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.65  E-value=2.3e-13  Score=127.10  Aligned_cols=267  Identities=12%  Similarity=0.129  Sum_probs=175.6

Q ss_pred             HHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhHHHH
Q 018904           48 SVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAV  127 (349)
Q Consensus        48 ~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i~~l  127 (349)
                      +++.++..++|+++++..|...     ..++.+.+  +..+..++...+... .++ .     + +..++....-.+.|+
T Consensus         3 ~l~~lia~~~wGs~g~~~k~~~-----g~~~~~~~--~~~~g~l~~~~~~~~-~~~-~-----~-~~~~~~~~~g~l~G~   67 (290)
T TIGR00776         3 ILIALIPALFWGSFVLINVKIG-----GGPYSQTL--GTTFGALILSIAIAI-FVL-P-----E-FWALSIFLVGLLSGA   67 (290)
T ss_pred             hHHHHHHHHHHhhhHHHHhccC-----CCHHHHHH--HHHHHHHHHHHHHHH-HhC-C-----c-ccccHHHHHHHHHHH
Confidence            4566778899999999998764     24444444  444443333322211 221 1     1 111222223455566


Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHhh-hHHHHHHHHHHHHhcCCCchHH----HHHHHHHHhhhhhccccCCCCcc-c--
Q 018904          128 LYLVKNLLQYYIFAYVDAPGYQILKN-LNIISTGVLYRIILKKKLSEIQ----WAAFILLCCGCTTAQLNSNSDRV-L--  199 (349)
Q Consensus       128 l~~~~n~l~~~al~~~~~~~~~ll~~-~~pl~talls~~~Lkekls~~q----w~gl~l~~~Gv~lv~~~~~~~~~-~--  199 (349)
                      +....|.+++.+.++++.+.+..+.+ +++++.++++.+++|||.++++    +.|+++.++|+.++...++++.. .  
T Consensus        68 ~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~  147 (290)
T TIGR00776        68 FWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSE  147 (290)
T ss_pred             HHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccc
Confidence            68899999999999999999999998 9999999999999999999999    99999999999988654322111 0  


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHH---HHHHHHHHHHHHHHHHHHHhchhhhhhccccccChHHHH
Q 018904          200 QTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINV---QNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITV  276 (349)
Q Consensus       200 ~~~~~G~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (349)
                      .+...|+++.++++++++++.+..|+. + .++  ...   +..-+...+.+++.+.  . +.++      +  .+...|
T Consensus       148 ~~~~~Gi~~~l~sg~~y~~~~~~~~~~-~-~~~--~~~~~~~~~g~~~~~~~~~~~~--~-~~~~------~--~~~~~~  212 (290)
T TIGR00776       148 FNFKKGILLLLMSTIGYLVYVVVAKAF-G-VDG--LSVLLPQAIGMVIGGIIFNLGH--I-LAKP------L--KKYAIL  212 (290)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHc-C-CCc--ceehhHHHHHHHHHHHHHHHHH--h-cccc------h--HHHHHH
Confidence            223579999999999999999999865 2 332  222   2222222333333222  0 0000      0  111122


Q ss_pred             HHHH---HHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHH----HHHHHHHHHhhhhcC
Q 018904          277 LMIL---NHALSGIAVSMVMK-YADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFF----LGSIVVSVSVYLHSA  344 (349)
Q Consensus       277 l~i~---~~a~~g~~~~~~~k-~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~----lG~~lV~~gv~l~~~  344 (349)
                      ..++   ..+++..+.....+ +.+.......++..|+.+++.+++++||+.+..++    +|.++++.|+.+-..
T Consensus       213 ~~~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~  288 (290)
T TIGR00776       213 LNILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI  288 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence            2222   12333333333335 66666677778889999999999999999999999    999999999887543

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.61  E-value=9.1e-13  Score=119.01  Aligned_cols=274  Identities=15%  Similarity=0.164  Sum_probs=185.1

Q ss_pred             hHHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhH
Q 018904           45 KRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPI  124 (349)
Q Consensus        45 ~~~~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i  124 (349)
                      ++++++.+.+-++|+..+...|+.+     +.++.++.--|-+-.+.+.+..+.. .|+.  ++.....+++|.+..+.+
T Consensus         6 ~~Gil~~l~Ay~lwG~lp~y~kll~-----~~~~~eIlahRviwS~~~~l~ll~~-~r~~--~~~~~~~~~p~~~~~~~l   77 (293)
T COG2962           6 RKGILLALLAYLLWGLLPLYFKLLE-----PLPATEILAHRVIWSFPFMLALLFL-LRQW--RELKQLLKQPKTLLMLAL   77 (293)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHc-----cCCHHHHHHHHHHHHHHHHHHHHHH-Hhhh--HHHHHHHhCcHHHHHHHH
Confidence            4678888899999999999999974     5778888888877776666555432 1211  111223456677778888


Q ss_pred             HHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCCCCcccccchh
Q 018904          125 PAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQ  204 (349)
Q Consensus       125 ~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~~~~~~~~~~~  204 (349)
                      .+++...+-.++.+|..+=..-++++=+..+|++..+++.+++|||+++.||+++.++.+||..-.....     +-+..
T Consensus        78 ~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g-----~lpwv  152 (293)
T COG2962          78 TALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLG-----SLPWV  152 (293)
T ss_pred             HHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcC-----CCcHH
Confidence            8888888888888999999999999999999999999999999999999999999999999998765432     12344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHH-HhchhhhhhccccccChHHHHHHHHHHH
Q 018904          205 GWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIV-IQDFDAVMNKGFFHGYSFITVLMILNHA  283 (349)
Q Consensus       205 G~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~a  283 (349)
                      .    +.-++.+++|+..-|+ .|-.+..+....++.+    .+..+...+ .+|..+     +....+...++.+...+
T Consensus       153 a----l~la~sf~~Ygl~RK~-~~v~a~~g~~lE~l~l----~p~al~yl~~l~~~~~-----~~~~~~~~~~~LLv~aG  218 (293)
T COG2962         153 A----LALALSFGLYGLLRKK-LKVDALTGLTLETLLL----LPVALIYLLFLADSGQ-----FLQQNANSLWLLLVLAG  218 (293)
T ss_pred             H----HHHHHHHHHHHHHHHh-cCCchHHhHHHHHHHH----hHHHHHHHHHHhcCch-----hhhcCCchHHHHHHHhh
Confidence            3    4446677777766544 3333222232222221    222222222 222221     11101122222222212


Q ss_pred             H-HH---HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcCC
Q 018904          284 L-SG---IAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAG  345 (349)
Q Consensus       284 ~-~g---~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~~  345 (349)
                      . ..   .+.+..-|..+-...++.++++|..-.+++++++||+++..+++..+.|-.|+.+|..+
T Consensus       219 ~vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d  284 (293)
T COG2962         219 LVTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSID  284 (293)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            1 11   12222335555556678899999999999999999999999999999999999988753

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=99.53  E-value=5.5e-14  Score=130.81  Aligned_cols=220  Identities=17%  Similarity=0.246  Sum_probs=154.9

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCCCCccc
Q 018904          120 IVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVL  199 (349)
Q Consensus       120 ~~~~i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~~~~~~  199 (349)
                      ......|+.+.+...+.+.++++++.+.+|++..+.|+++.++++++.+|+.++..++.++....||.+....+.     
T Consensus        84 ~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~-----  158 (316)
T KOG1441|consen   84 RTLLPLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTEL-----  158 (316)
T ss_pred             HHHHHHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccc-----
Confidence            345666778899999999999999999999999999999999999999999999999999999999999876432     


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHH--HHHHHHHHHHH-HHHHHhchhhhhhccccccChHHHH
Q 018904          200 QTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNF--WLYVFGMAFNA-VAIVIQDFDAVMNKGFFHGYSFITV  276 (349)
Q Consensus       200 ~~~~~G~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~--~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  276 (349)
                      +....|.+..+.+.+..++.+++.++++++++. +..-.|+  ++.-.+..+.+ +.....++... ..-....++...+
T Consensus       159 ~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~-~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~-~~~~~~~~~~~~~  236 (316)
T KOG1441|consen  159 SFNLFGFISAMISNLAFALRNILSKKLLTSKGE-SLNSMNLLYYTAPISLIFLLIPFLDYVEGNKF-VGFLTAPWFVTFL  236 (316)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-ccCchHHHHHhhhHHHHHHhcchHhhhcccce-eeeeccccchhhH
Confidence            356899999999999999999999999964332 2222222  22223333333 32222222211 0001112333322


Q ss_pred             HHHHHHHH---HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcCCC
Q 018904          277 LMILNHAL---SGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGK  346 (349)
Q Consensus       277 l~i~~~a~---~g~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~~~  346 (349)
                      ..++...+   .+.....++.+.++++-+.+....-++....|+++|++++|+.+.+|.++.+.|+++|++.|
T Consensus       237 ~~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k  309 (316)
T KOG1441|consen  237 ILLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAK  309 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHh
Confidence            22222211   12233344455556655566555666777889999999999999999999999999999755

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=99.51  E-value=2.7e-12  Score=116.08  Aligned_cols=285  Identities=16%  Similarity=0.202  Sum_probs=188.0

Q ss_pred             HHHHHHHHHhHHHHHHHHhhcc--CCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhh-hhhHHH
Q 018904           50 VTLALTVLTSSQAILIVWSKRA--GKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVI-VYPIPA  126 (349)
Q Consensus        50 ~l~~~~~~~s~~~i~~k~s~~~--~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~-~~~i~~  126 (349)
                      ..+.+++.|-.-.|..++...+  ...+|| ..++-+..++++.++.....  .+++. .++.|...+|++.+ +.+..|
T Consensus        16 ~~L~lVl~yY~~Si~Ltf~~~~~~~~f~fP-Lf~ts~h~~v~flfa~~~~~--l~~~~-~~r~r~~~sw~~~Lr~~aPta   91 (349)
T KOG1443|consen   16 LTLALVLLYYFLSIGLTFYFKWLTKNFHFP-LFVTSLHLAVKFLFAALSRR--LYQCS-VPRARVVLSWRDYLRRLAPTA   91 (349)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhcCcCCc-hHHHHHHHHHHHHHHHHHHH--HHhcc-CCccccCCcHHHHHHHhhhhh
Confidence            3344557777777777876543  345555 56666777888776665442  22222 22334456787544 455666


Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCCCCcccccchhHH
Q 018904          127 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGW  206 (349)
Q Consensus       127 ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~~~~~~~~~~~G~  206 (349)
                      +.-+..-.+.+++++|++.+.|++..+..|+|+.+++..+-=||.++.-..-+++..+|+.+....+.     +....|.
T Consensus        92 lata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsT-----qf~i~Gf  166 (349)
T KOG1443|consen   92 LATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKST-----QFNIEGF  166 (349)
T ss_pred             hhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEeccc-----ceeehhH
Confidence            66778889999999999999999999999999999999998899999888888888889988877643     2457899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCC--CchHHHHHHHHHHHHHHHHHHHHHhch-hhhhhccccccC-hHHHHHHHHHH
Q 018904          207 IMAIVMALLSGFAGVYTEAIMKKRPS--RNINVQNFWLYVFGMAFNAVAIVIQDF-DAVMNKGFFHGY-SFITVLMILNH  282 (349)
Q Consensus       207 ll~l~a~~~~al~~v~~e~~~k~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~l~i~~~  282 (349)
                      .+++++++++|+-..++++++++++.  .++.....++.-.-.+..++..+..++ ....+...+... +...+..+...
T Consensus       167 ~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i  246 (349)
T KOG1443|consen  167 FLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLI  246 (349)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHH
Confidence            99999999999999999999988762  111111122221222222222222232 111111111111 11234444444


Q ss_pred             HHHHHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcC
Q 018904          283 ALSGIAVSMVMKY--------ADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSA  344 (349)
Q Consensus       283 a~~g~~~~~~~k~--------~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~  344 (349)
                      +++|. .++++..        .+.+..+.+.-+.-+.+.+++..+.+|+++...++|..+...|+..|..
T Consensus       247 ~l~g~-laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~~  315 (349)
T KOG1443|consen  247 SLGGL-LAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHRN  315 (349)
T ss_pred             HHHHH-HHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhcc
Confidence            55554 2343322        2333444555556678999999999999999999999999999999954

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=99.47  E-value=9.9e-15  Score=128.51  Aligned_cols=247  Identities=16%  Similarity=0.204  Sum_probs=179.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHH
Q 018904           78 VTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNII  157 (349)
Q Consensus        78 ~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl  157 (349)
                      |..-.|+...+-.++=-+++.  .|+      +..+..||+   |.+.|+.+.-.|.+..-|.||++....+++-.-.++
T Consensus        48 Pt~QtFl~Y~LLalVY~~~~~--fR~------~~~~~~~~h---Yilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip  116 (336)
T KOG2766|consen   48 PTSQTFLNYVLLALVYGPIML--FRR------KYIKAKWRH---YILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIP  116 (336)
T ss_pred             ccHHHHHHHHHHHHHHhhHHH--hhh------HHHHHHHHH---hhheeEEeecccEEEeeehhhcchHHHHHHHHhhhH
Confidence            455567776665444444442  332      123344665   777788888899999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCC---CCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCc
Q 018904          158 STGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSN---SDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRN  234 (349)
Q Consensus       158 ~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~---~~~~~~~~~~G~ll~l~a~~~~al~~v~~e~~~k~~~~~~  234 (349)
                      .+.+++|++||.|+.+.|..|++++..||..+..++-   +....+++..|+++++.++.++|.+++.+|.+.|+-+.  
T Consensus       117 ~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GATlYaVSNv~EEflvkn~d~--  194 (336)
T KOG2766|consen  117 CVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLVKNADR--  194 (336)
T ss_pred             HHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEecceeeeeccccHHHHHhcCcH--
Confidence            9999999999999999999999999999998876531   12234578999999999999999999999999988653  


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccChHHHHHH---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 018904          235 INVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLM---ILNHALSGIAVSMVMKYADNIVKVYSTSVAMLL  311 (349)
Q Consensus       235 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---i~~~a~~g~~~~~~~k~~~~i~~~~~~~~~~v~  311 (349)
                       ....-++..+|.+++.+-.+.+ ..+...   . .|++.....   .+.+-+.......++|..++..-+.....+-.+
T Consensus       195 -~elm~~lgLfGaIIsaIQ~i~~-~~~~~t---l-~w~~~i~~yl~f~L~MFllYsl~pil~k~~~aT~~nlslLTsDmw  268 (336)
T KOG2766|consen  195 -VELMGFLGLFGAIISAIQFIFE-RHHVST---L-HWDSAIFLYLRFALTMFLLYSLAPILIKTNSATMFNLSLLTSDMW  268 (336)
T ss_pred             -HHHHHHHHHHHHHHHHHHHhhh-ccceee---E-eehHHHHHHHHHHHHHHHHHHhhHHheecCCceEEEhhHhHHHHH
Confidence             4444577889999988875543 222111   1 122221111   112222334444555666666556666667777


Q ss_pred             HHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcCC
Q 018904          312 TAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAG  345 (349)
Q Consensus       312 t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~~  345 (349)
                      +.++  ..||-+.+|...+..+.+..|.++|...
T Consensus       269 sl~i--~~FgYhv~wLY~laF~~i~~GliiYs~r  300 (336)
T KOG2766|consen  269 SLLI--RTFGYHVDWLYFLAFATIATGLIIYSTR  300 (336)
T ss_pred             HHHH--HHHhcchhhhhHHHHHHHHHhhEEeecc
Confidence            7777  7889999999999999999999999754

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.46  E-value=2.6e-11  Score=111.01  Aligned_cols=282  Identities=16%  Similarity=0.167  Sum_probs=182.6

Q ss_pred             HHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHH-HHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhHHH
Q 018904           48 SVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTAN-FLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPA  126 (349)
Q Consensus        48 ~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~v-f~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i~~  126 (349)
                      .+..+...+.-....++-|+.-.  .|+||..-.+ +.+.+.. ++.+.++    ++.|.-+.  ...+|+..+++..++
T Consensus        14 l~sa~~Y~~sS~lm~vvNK~vls--~y~f~~~l~l~~~Q~l~s-~~~v~~l----k~~~lv~~--~~l~~~~~kk~~P~~   84 (314)
T KOG1444|consen   14 LLSALFYCLSSILMTVVNKIVLS--SYNFPMGLLLMLLQSLAS-VLVVLVL----KRLGLVNF--RPLDLRTAKKWFPVS   84 (314)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHH-HHHHHHH----HHhceeec--CCcChHHHHHHccHH
Confidence            33444444444455556676443  4778765444 3444443 3333333    33332111  124577777788888


Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCCCCcccccchhHH
Q 018904          127 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGW  206 (349)
Q Consensus       127 ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~~~~~~~~~~~G~  206 (349)
                      +++.+.-.....+++|++.+.+.+++...|++|++.-..++|.|.++.-|.++....+|......++..     ....|+
T Consensus        85 ~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~s-----f~~~gY  159 (314)
T KOG1444|consen   85 LLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLS-----FNLRGY  159 (314)
T ss_pred             HHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccce-----ecchhH
Confidence            888888888888999999999999999999999999999999999999999999999999887654322     334599


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHH-HHhchhhhhhccccccChHHHHHHHHHHHHH
Q 018904          207 IMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAI-VIQDFDAVMNKGFFHGYSFITVLMILNHALS  285 (349)
Q Consensus       207 ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~a~~  285 (349)
                      .+++..+++.+...++.|+..+..+- +-+...++-.+.+.+...+.. +.+|++..... +-.......+..+...++.
T Consensus       160 ~w~~~n~~~~a~~~v~~kk~vd~~~l-~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~-~~~~~~~~~~~~~~lScv~  237 (314)
T KOG1444|consen  160 SWALANCLTTAAFVVYVKKSVDSANL-NKFGLVFYNNLLSLPPLLILSFITGELDALSLN-FDNWSDSSVLVVMLLSCVM  237 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccccc-cceeEEeehhHHHHHHHHHHHHHhcchHHHHhh-cccccchhHHHHHHHHHHH
Confidence            99999999999999999988766432 111111122233444444333 34555522111 1001123345555555555


Q ss_pred             HHHHHHHH----HHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcCC
Q 018904          286 GIAVSMVM----KYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAG  345 (349)
Q Consensus       286 g~~~~~~~----k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~~  345 (349)
                      |..++|..    +..++.............+.+.+.+.+|++.++.-++|..+-++|..+|+..
T Consensus       238 gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~  301 (314)
T KOG1444|consen  238 GFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYA  301 (314)
T ss_pred             HHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhh
Confidence            55555533    3334444334443445567777778889999999999999999998888754

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.42  E-value=8.5e-12  Score=115.79  Aligned_cols=219  Identities=19%  Similarity=0.207  Sum_probs=150.6

Q ss_pred             HHHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCCCC---cccc
Q 018904          124 IPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSD---RVLQ  200 (349)
Q Consensus       124 i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~~~---~~~~  200 (349)
                      .-+.+-+++|...+.|+++++.+..+++.++.-+||..++..+.+||+|+.|.+++++.+.||+++..+++.+   ...+
T Consensus       164 ~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~  243 (416)
T KOG2765|consen  164 FFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPAS  243 (416)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCcc
Confidence            3345578899999999999999999999999999999999999999999999999999999999998764322   1234


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCchHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccChHHHHHHH
Q 018904          201 TPLQGWIMAIVMALLSGFAGVYTEAIMKKRP-SRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMI  279 (349)
Q Consensus       201 ~~~~G~ll~l~a~~~~al~~v~~e~~~k~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i  279 (349)
                      ++..|.++.+++|+++|.|.+..||-..+++ ..++...--+.+.+..++..+..++.+.- ..+  .|.-.+..-...+
T Consensus       244 ~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~-~~e--~F~lP~~~q~~~v  320 (416)
T KOG2765|consen  244 RPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFF-GEE--RFELPSSTQFSLV  320 (416)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHh-ccC--cccCCCCceeEee
Confidence            6789999999999999999999998776663 22332111122222233332222221211 000  0111111112222


Q ss_pred             HHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcCC
Q 018904          280 LNHALSGIAVSMVMKY-----ADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAG  345 (349)
Q Consensus       280 ~~~a~~g~~~~~~~k~-----~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~~  345 (349)
                      +..++.+.+++=.+|.     .+........++++.++.+...++=|.++|+.+++|.+.|+.|-++.|..
T Consensus       321 v~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~  391 (416)
T KOG2765|consen  321 VFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNIS  391 (416)
T ss_pred             eHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecc
Confidence            2333444444433333     33444444455677899999999889999999999999999999887753

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.37  E-value=1.2e-09  Score=96.80  Aligned_cols=256  Identities=14%  Similarity=0.062  Sum_probs=157.0

Q ss_pred             HHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhHHHHHHH
Q 018904           51 TLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYL  130 (349)
Q Consensus        51 l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i~~ll~~  130 (349)
                      ++..+-.+++..+. |..    .+...+..+.-+|-.+..++.+++. |.||++-      -+.+|+.+..|+   +...
T Consensus        18 l~amvsiq~Gas~A-k~L----FP~vG~~g~t~lRl~~aaLIll~l~-RPwr~r~------~~~~~~~~~~yG---vsLg   82 (292)
T COG5006          18 LVAMVSIQSGASFA-KSL----FPLVGAAGVTALRLAIAALILLALF-RPWRRRL------SKPQRLALLAYG---VSLG   82 (292)
T ss_pred             HHHHHHHHhhHHHH-HHH----ccccChhhHHHHHHHHHHHHHHHHh-hHHHhcc------ChhhhHHHHHHH---HHHH
Confidence            33445555554433 333    2456678888899888877777665 2222211      123455544444   5567


Q ss_pred             HHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCCCCcccccchhHHHHHH
Q 018904          131 VKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAI  210 (349)
Q Consensus       131 ~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~~~~~~~~~~~G~ll~l  210 (349)
                      .-|.++|.+++.+|.+.+..+-++.|+.+++++    .||..-.-|.+  +.+.|..+..-.+.+  ..+....|..+.+
T Consensus        83 ~MNl~FY~si~riPlGiAVAiEF~GPL~vA~~~----sRr~~d~vwva--LAvlGi~lL~p~~~~--~~~lDp~Gv~~Al  154 (292)
T COG5006          83 GMNLLFYLSIERIPLGIAVAIEFTGPLAVALLS----SRRLRDFVWVA--LAVLGIWLLLPLGQS--VWSLDPVGVALAL  154 (292)
T ss_pred             HHHHHHHHHHHhccchhhhhhhhccHHHHHHHh----ccchhhHHHHH--HHHHHHHhheeccCC--cCcCCHHHHHHHH
Confidence            889999999999999999999999999988764    45555555655  556666655322211  1234578999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccChHHHHHHHHHHHHHHHHHH
Q 018904          211 VMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVS  290 (349)
Q Consensus       211 ~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~a~~g~~~~  290 (349)
                      .+..||+.|=+..+|.-+..+.  ......-+. .+.++.++.-....+.     .+   +++.....-+..++.++.+.
T Consensus       155 ~AG~~Wa~YIv~G~r~g~~~~g--~~g~a~gm~-vAaviv~Pig~~~ag~-----~l---~~p~ll~laLgvavlSSalP  223 (292)
T COG5006         155 GAGACWALYIVLGQRAGRAEHG--TAGVAVGML-VAALIVLPIGAAQAGP-----AL---FSPSLLPLALGVAVLSSALP  223 (292)
T ss_pred             HHhHHHHHHHHHcchhcccCCC--chHHHHHHH-HHHHHHhhhhhhhcch-----hh---cChHHHHHHHHHHHHhcccc
Confidence            9999999999999988754332  111111111 1222222221111111     11   12222222233344445555


Q ss_pred             HHH-----HHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhh
Q 018904          291 MVM-----KYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVY  340 (349)
Q Consensus       291 ~~~-----k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~  340 (349)
                      |.+     +..+.-.-+...+.+|.++.+.|++++||++|..||+|.+.|+.+..
T Consensus       224 YsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsa  278 (292)
T COG5006         224 YSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASA  278 (292)
T ss_pred             hHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence            544     33333333444567789999999999999999999999999998876

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.35  E-value=1.6e-10  Score=102.97  Aligned_cols=293  Identities=17%  Similarity=0.182  Sum_probs=191.7

Q ss_pred             chhhhhhHHHHHHHHHHHHHhHHHHHHHHhhc-cCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccc
Q 018904           39 SELANWKRKSVVTLALTVLTSSQAILIVWSKR-AGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLD  117 (349)
Q Consensus        39 ~~~~~~~~~~~~l~~~~~~~s~~~i~~k~s~~-~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~  117 (349)
                      ++.++|++-.+......+++-.++.+-.+..+ .+..+|. +...+.+.++-..+.+      ......++ .+....||
T Consensus        36 s~kpkw~QFlic~~g~Ff~Yl~yGy~qElif~~~gfkp~G-WylTlvQf~~Ysg~gl------ie~~~~~~-k~r~iP~r  107 (367)
T KOG1582|consen   36 SDKPKWTQFLICSAGVFFLYLVYGYLQELIFNVEGFKPFG-WYLTLVQFLVYSGFGL------IELQLIQT-KRRVIPWR  107 (367)
T ss_pred             ccCchhhhHHHHHhHHHHHHHHHHHHHHHHhccccCcccc-hHHHHHHHHHHHhhhh------eEEEeecc-cceecchh
Confidence            44566665444445555666666766655443 3333343 4444444333111111      11111111 22234466


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCCCCc
Q 018904          118 EVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDR  197 (349)
Q Consensus       118 ~l~~~~i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~~~~  197 (349)
                      .   |.+.+.+-.....+.+-++.|++-++..+..+++.+-+.+.+.++=++|+.+....+..+..+|.++..+.++.. 
T Consensus       108 t---Y~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~-  183 (367)
T KOG1582|consen  108 T---YVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQT-  183 (367)
T ss_pred             H---hhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhccccc-
Confidence            4   777777778889999999999999999999999999999999999999999999999999999999987765322 


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccChHHHHH
Q 018904          198 VLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVL  277 (349)
Q Consensus       198 ~~~~~~~G~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  277 (349)
                      ..+....|+.+.-+|-++.|+-+-.+||.+|.++. +.....++-+..|.++.+..+.. .++-.....+...++..++.
T Consensus       184 sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~-ss~EmvfySy~iG~vflf~~mvl-Tge~f~a~~fcaehp~~tyG  261 (367)
T KOG1582|consen  184 SPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPA-SSSEMVFYSYGIGFVFLFAPMVL-TGELFSAWTFCAEHPVRTYG  261 (367)
T ss_pred             CCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCC-CcceEEEeeecccHHHHHHHHHh-cccchhhhHHHHhCcHhHHH
Confidence            22345789999999999999999999999998765 22222233344455555444332 11111111122222333333


Q ss_pred             HHHHHHHHH----HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcCC
Q 018904          278 MILNHALSG----IAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAG  345 (349)
Q Consensus       278 ~i~~~a~~g----~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~~  345 (349)
                      ..+.-++.+    ..+-..+|..++......++.+.-+|.++|+++|..++|....-|..+|+.|+++-..+
T Consensus       262 y~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ys  333 (367)
T KOG1582|consen  262 YAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYS  333 (367)
T ss_pred             HHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhccc
Confidence            332222211    22233456678888888888889999999999999999999999999999999965443

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=99.33  E-value=1.5e-12  Score=116.09  Aligned_cols=215  Identities=17%  Similarity=0.282  Sum_probs=148.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHhc-CChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCCCCc---
Q 018904          122 YPIPAVLYLVKNLLQYYIFAY-VDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDR---  197 (349)
Q Consensus       122 ~~i~~ll~~~~n~l~~~al~~-~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~~~~---  197 (349)
                      |++.-..++..|.+.++++++ +|.+..-+.++..++.+++++++++|+|+|.+|+.++++..+|+++.....+.+.   
T Consensus        67 Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~  146 (330)
T KOG1583|consen   67 YAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSK  146 (330)
T ss_pred             hheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhh
Confidence            555555678899999999997 9999999999999999999999999999999999999999999998765322110   


Q ss_pred             --------c---cccchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHH------hchh
Q 018904          198 --------V---LQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVI------QDFD  260 (349)
Q Consensus       198 --------~---~~~~~~G~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~------~~~~  260 (349)
                              .   ......|+.+...+.+.+|..++|+|...|+++. .. ..++   ++.=.+.++..+.      .++.
T Consensus       147 ~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGK-h~-~Eal---FytH~LsLP~Flf~~~div~~~~  221 (330)
T KOG1583|consen  147 LSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGK-HW-KEAL---FYTHFLSLPLFLFMGDDIVSHWR  221 (330)
T ss_pred             hcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-Ch-HHHH---HHHHHhccchHHHhcchHHHHHH
Confidence                    0   0124579999999999999999999999999875 22 2222   2332233333221      1111


Q ss_pred             hh--------hhccccccChHHHHHHHHHHHHHH-HHHHHHHHH---hhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHH
Q 018904          261 AV--------MNKGFFHGYSFITVLMILNHALSG-IAVSMVMKY---ADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAF  328 (349)
Q Consensus       261 ~~--------~~~~~~~~~~~~~~l~i~~~a~~g-~~~~~~~k~---~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~  328 (349)
                      ..        +..|+.   -+..|..++.+.+.+ .|+..++-.   .++........++..++.++|+..|++++|++.
T Consensus       222 ~~~~se~~~~p~~g~~---vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h  298 (330)
T KOG1583|consen  222 LAFKSESYLIPLLGFK---VPSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWH  298 (330)
T ss_pred             HHhcCcceeccccCcc---ccHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHH
Confidence            11        111111   233455445444433 233332211   123333344556778999999999999999999


Q ss_pred             HHHHHHHHHHhhhhcC
Q 018904          329 FLGSIVVSVSVYLHSA  344 (349)
Q Consensus       329 ~lG~~lV~~gv~l~~~  344 (349)
                      |+|+++|+.|..+|..
T Consensus       299 ~lGa~lVF~Gt~~fa~  314 (330)
T KOG1583|consen  299 WLGAALVFFGTLLFAN  314 (330)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998863

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.16  E-value=3.3e-10  Score=91.36  Aligned_cols=123  Identities=16%  Similarity=0.087  Sum_probs=95.7

Q ss_pred             HHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhHHHHH-HHHHHHH
Q 018904           57 LTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVL-YLVKNLL  135 (349)
Q Consensus        57 ~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i~~ll-~~~~n~l  135 (349)
                      .|+...++.|...    ++++|.+.++.|.+...+ .+++..  ..+++.    ....++++.......+.+ ....+.+
T Consensus         2 ~~a~~~~~~k~~~----~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (126)
T PF00892_consen    2 SWAIYSVFSKKLL----KKISPLSITFWRFLIAGI-LLILLL--ILGRKP----FKNLSPRQWLWLLFLGLLGTALAYLL   70 (126)
T ss_pred             eeeeHHHHHHHHh----ccCCHHHHHHHHHHHHHH-HHHHHH--hhcccc----ccCCChhhhhhhhHhhccceehHHHH
Confidence            4777788887764    348899999999999886 444332  122111    112234444455666666 5789999


Q ss_pred             HHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhcc
Q 018904          136 QYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQ  190 (349)
Q Consensus       136 ~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~  190 (349)
                      .+.++++++++..+++.++.|+++.+++++++||+++++||.|+++.+.|+.++.
T Consensus        71 ~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   71 YFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             HHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998763

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.11  E-value=5e-11  Score=106.36  Aligned_cols=259  Identities=17%  Similarity=0.181  Sum_probs=179.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCccc---cccchhhhhhHHHHHHHHHHHHHHHHHhcCChHHHHHHhh
Q 018904           78 VTTANFLVETLKCALSLAALARIWNHE-GVTDDNRLS---TTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKN  153 (349)
Q Consensus        78 ~~~~vf~~e~~~~~i~l~~l~~~~~~~-~~~~~~~~~---~~~~~l~~~~i~~ll~~~~n~l~~~al~~~~~~~~~ll~~  153 (349)
                      |....+...++...+|+.+-.. .++. +....+++.   ..-|+++.+.+   .+.+--...++.++|++.+-|++=++
T Consensus        61 plf~t~~qcLvt~~~c~~ls~l-s~k~~~~ftfp~~~ldl~t~r~vlplsv---Vfi~mI~fnnlcL~yVgVaFYyvgRs  136 (347)
T KOG1442|consen   61 PLFITWYQCLVTTSICLVLSSL-SVKYPGLFTFPSLQLDLATARQVLPLSV---VFILMISFNNLCLKYVGVAFYYVGRS  136 (347)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HhhccceeccCcccccHHHHHhhcchhh---eeeeehhccceehhhcceEEEEeccc
Confidence            4556666666666666654311 1111 111112222   22244444433   33333344556899999999999999


Q ss_pred             hHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 018904          154 LNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSR  233 (349)
Q Consensus       154 ~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~~~~~~~~~~~G~ll~l~a~~~~al~~v~~e~~~k~~~~~  233 (349)
                      +..+|+.++++.+||+|-+..-..+.++.+.|.-+=.-.+  +....-...|.++...++++-|+.++++||..-...+ 
T Consensus       137 LttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE--~~~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~-  213 (347)
T KOG1442|consen  137 LTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQE--GSTGTLSWIGVIFGVLASLAVALNAIYTKKVLPPVGD-  213 (347)
T ss_pred             hhhhHHHHhHHhhcccccccccceeehhheehheeccccc--cccCccchhhhHHHHHHHHHHHHHHHhhheecccccC-
Confidence            9999999999999999999887777666666654432111  1112346789999999999999999999987665555 


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHH-hchhhhhhccccccChHHHHHHHHHHHHHHHHHHHHH----HHhhhHHHHHHHHHH
Q 018904          234 NINVQNFWLYVFGMAFNAVAIVI-QDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVM----KYADNIVKVYSTSVA  308 (349)
Q Consensus       234 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~a~~g~~~~~~~----k~~~~i~~~~~~~~~  308 (349)
                      .+|..+.+...++.++.++.+++ .+.+.+.  ++.+.++...|......++.|..+.|+.    |..++.+.+...+..
T Consensus       214 ~iw~lt~ynnv~a~lLflpll~lnge~~~v~--~~~~l~a~~Fw~~mtLsglfgF~mgyvTg~QIK~TSplThnISgTAk  291 (347)
T KOG1442|consen  214 CIWRLTAYNNVNALLLFLPLLILNGEFQAVV--GFPHLPAIKFWILMTLSGLFGFAMGYVTGWQIKVTSPLTHNISGTAK  291 (347)
T ss_pred             eehhhHHHHHHHHHHHHHHHHHHcchHHHHc--CcccchHHHHHHHHHHHHHHHHHhhheeeEEEEecccceeeecHhHH
Confidence            78888888888888877776543 2333222  3333446677888778788887777764    556666666666677


Q ss_pred             HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcCC
Q 018904          309 MLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAG  345 (349)
Q Consensus       309 ~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~~  345 (349)
                      ...-.++++.+++|..+..-|-|-.+|+.|..+|+.-
T Consensus       292 a~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~v  328 (347)
T KOG1442|consen  292 AAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLV  328 (347)
T ss_pred             HHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHH
Confidence            7777888999999999999999999999999999753

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.10  E-value=1.7e-09  Score=86.10  Aligned_cols=134  Identities=13%  Similarity=0.104  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhHHHHH
Q 018904           49 VVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVL  128 (349)
Q Consensus        49 ~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i~~ll  128 (349)
                      +..++..++++..+++.|.--    ++.+|....+.|......++..+.+   ..++.+...  ..+.|.+....+.|+.
T Consensus         6 ~~ALLsA~fa~L~~iF~KIGl----~~vdp~~At~IRtiVi~~~l~~v~~---~~g~~~~~~--~~~~k~~lflilSGla   76 (140)
T COG2510           6 IYALLSALFAGLTPIFAKIGL----EGVDPDFATTIRTIVILIFLLIVLL---VTGNWQAGG--EIGPKSWLFLILSGLA   76 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc----cccCccHHHHHHHHHHHHHHHHHHH---hcCceeccc--ccCcceehhhhHHHHH
Confidence            345567888999999999854    4577899999999887777666652   222111110  1234666667777877


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccc
Q 018904          129 YLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL  191 (349)
Q Consensus       129 ~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~  191 (349)
                      -.+.-.++|.|++.=+++...-+..+.|++++++++++||||+|..+|+|+++..+|++++..
T Consensus        77 ~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~  139 (140)
T COG2510          77 GGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL  139 (140)
T ss_pred             HHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence            888999999999999999999999999999999999999999999999999999999988753

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=99.07  E-value=1.1e-09  Score=87.75  Aligned_cols=71  Identities=24%  Similarity=0.359  Sum_probs=63.2

Q ss_pred             hhHHHHHH-HHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccC
Q 018904          122 YPIPAVLY-LVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNS  193 (349)
Q Consensus       122 ~~i~~ll~-~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~  193 (349)
                      ....|++. ..++.++++|+++.| +...++.++.|+++++++++++|||+++++|.++++.++|++++..++
T Consensus        37 ~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~  108 (113)
T PF13536_consen   37 LILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSD  108 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence            44445554 488999999999999 588899999999999999999999999999999999999999998764

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=99.00  E-value=2.2e-08  Score=84.19  Aligned_cols=140  Identities=16%  Similarity=0.221  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcC----CCCchHHHHHHHHHHHHHHHHHHHHHhchhhhhh-c-cccc-cC--hHHH
Q 018904          205 GWIMAIVMALLSGFAGVYTEAIMKKR----PSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMN-K-GFFH-GY--SFIT  275 (349)
Q Consensus       205 G~ll~l~a~~~~al~~v~~e~~~k~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~-~~~~-~~--~~~~  275 (349)
                      |.++++.++++.|+..++.|+.+++.    ...+......++...+.++.++.....|..+..+ . .... ..  +...
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            67889999999999999999999884    2224444445556667766666554433322111 0 0010 00  2233


Q ss_pred             HHHHHHHHH----HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcC
Q 018904          276 VLMILNHAL----SGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSA  344 (349)
Q Consensus       276 ~l~i~~~a~----~g~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~  344 (349)
                      +..++..++    .......++++.+++..+....+..+++.+.|+++|||++|..+++|.++.+.|+++|++
T Consensus        81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy  153 (153)
T PF03151_consen   81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY  153 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence            333333333    223445577888999999999999999999999999999999999999999999999974

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=98.82  E-value=2.3e-07  Score=84.83  Aligned_cols=133  Identities=14%  Similarity=0.004  Sum_probs=96.9

Q ss_pred             hHHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhH
Q 018904           45 KRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPI  124 (349)
Q Consensus        45 ~~~~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i  124 (349)
                      .++.++.++..+.|+...+..|...++  .+.++.+....+..+..++.++..   ...+.  + ..  .++++......
T Consensus       127 ~~G~~~~l~a~~~~a~~~~~~k~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~--~-~~--~~~~~~~~~~~  196 (260)
T TIGR00950       127 PAGLLLGLGSGISFALGTVLYKRLVKK--EGPELLQFTGWVLLLGALLLLPFA---WFLGP--N-PQ--ALSLQWGALLY  196 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHhhc--CCchHHHHHHHHHHHHHHHHHHHH---HhcCC--C-CC--cchHHHHHHHH
Confidence            357778888999999999998886532  222233444356667666666665   22221  1 11  12334333444


Q ss_pred             HHHH-HHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhh
Q 018904          125 PAVL-YLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCT  187 (349)
Q Consensus       125 ~~ll-~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~  187 (349)
                      .+++ ......++++++++.+++..+++.++.|+++++++++++||+++..||.|..+.+.|++
T Consensus       197 ~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~  260 (260)
T TIGR00950       197 LGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL  260 (260)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence            4444 46788899999999999999999999999999999999999999999999999999873

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=98.79  E-value=1.8e-07  Score=81.53  Aligned_cols=222  Identities=12%  Similarity=0.126  Sum_probs=143.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCCCCc--c
Q 018904          121 VYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDR--V  198 (349)
Q Consensus       121 ~~~i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~~~~--~  198 (349)
                      .+..++++..+--.-.--++||++.+.+++..++.++.+|..-..++|.|++.....+.++..+.-....+++....  .
T Consensus        70 ~WfpiSfLLv~MIyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~  149 (309)
T COG5070          70 KWFPISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFK  149 (309)
T ss_pred             hhcCHHHHHHHHHHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHH
Confidence            34555655444333444689999999999999999999999999999999999999999888877766655432110  1


Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHH-HHHhchhhhhhccccccChHHHHH
Q 018904          199 LQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVA-IVIQDFDAVMNKGFFHGYSFITVL  277 (349)
Q Consensus       199 ~~~~~~G~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l  277 (349)
                      .+..+.|++++...++.++..-...||..|-..... ....++-...+.++.... ++.+||++..-..-+.. +...|+
T Consensus       150 ~~~lN~GY~Wm~~NclssaafVL~mrkri~ltNf~d-~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~-d~l~am  227 (309)
T COG5070         150 AQILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKD-FDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSV-DSLMAM  227 (309)
T ss_pred             hcccCCceEEEehhhHhHHHHHHHHHHhhcccccch-hhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCCh-HHHHHH
Confidence            124678999999999999988888887665432111 111222233455544433 34577764311111111 223344


Q ss_pred             HHHHHHHH--HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcC
Q 018904          278 MILNHALS--GIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSA  344 (349)
Q Consensus       278 ~i~~~a~~--g~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~  344 (349)
                      .+-..+-.  ..+.+++.+..++..-++...+...-..+.|.++|||+.+...+....+=..+..+|..
T Consensus       228 ~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYav  296 (309)
T COG5070         228 FISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAV  296 (309)
T ss_pred             HHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence            33221111  13345556666666666666677777889999999999999998888886666666653

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=98.78  E-value=2.9e-06  Score=77.49  Aligned_cols=214  Identities=12%  Similarity=0.174  Sum_probs=137.0

Q ss_pred             chhhhhhHHHHHHHHHHHHHHHHHhcCChHHHHHHh-hhHHHHHHHHHHHHhcCCCchHHHH----HHHHHHhhhhhccc
Q 018904          117 DEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILK-NLNIISTGVLYRIILKKKLSEIQWA----AFILLCCGCTTAQL  191 (349)
Q Consensus       117 ~~l~~~~i~~ll~~~~n~l~~~al~~~~~~~~~ll~-~~~pl~talls~~~Lkekls~~qw~----gl~l~~~Gv~lv~~  191 (349)
                      +.++.-.+.|++..+.+..+|.+++++..+...=+. .++.+.+++.++++++|--+..++.    |+++..+|+.+...
T Consensus        43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~  122 (269)
T PF06800_consen   43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY  122 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence            666777888999999999999999999988665554 8888999999999999998888876    78888889988876


Q ss_pred             cCCCCcc---cccchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhchhhhhhcccc
Q 018904          192 NSNSDRV---LQTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFF  268 (349)
Q Consensus       192 ~~~~~~~---~~~~~~G~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (349)
                      .++.+..   .++...|++..+++.+.+..|.+..+. .+-++-.-+..|..     |+++..........+     .++
T Consensus       123 ~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~-~~~~~~~~~lPqai-----Gm~i~a~i~~~~~~~-----~~~  191 (269)
T PF06800_consen  123 QDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKA-FHVSGWSAFLPQAI-----GMLIGAFIFNLFSKK-----PFF  191 (269)
T ss_pred             ccccccccccccchhhHHHHHHHHHHHHHHHHHHHHh-cCCChhHhHHHHHH-----HHHHHHHHHhhcccc-----ccc
Confidence            5433321   234567999999999999999888764 22222112222322     333332222111111     111


Q ss_pred             ccChHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHH----HHHHHHHHHHHhhh
Q 018904          269 HGYSFITVLMILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLA----FFLGSIVVSVSVYL  341 (349)
Q Consensus       269 ~~~~~~~~l~i~~~a~~g~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~----~~lG~~lV~~gv~l  341 (349)
                      +..++...+.=+.-+++....-......+....-..+..+++++++.|.++|+|+=+..    .++|.++|+.|..+
T Consensus       192 ~k~~~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il  268 (269)
T PF06800_consen  192 EKKSWKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL  268 (269)
T ss_pred             ccchHHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence            11122222211222334443333333333222333355778999999999999997654    57888888887654

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=98.76  E-value=1.6e-07  Score=80.32  Aligned_cols=203  Identities=12%  Similarity=0.181  Sum_probs=133.0

Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccCCCCcccccchhHH
Q 018904          127 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNSNSDRVLQTPLQGW  206 (349)
Q Consensus       127 ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~~~~~~~~~~~~G~  206 (349)
                      ++.+..|.++..|++.++++.++.+..++-.|+-++++..||+|+...+.++.++...|++.+.+.++ +  ..+...|+
T Consensus        61 i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN-~--~a~e~iGi  137 (290)
T KOG4314|consen   61 IFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADN-E--HADEIIGI  137 (290)
T ss_pred             EEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccc-h--hhhhhhhH
Confidence            34678899999999999999999999999999999999999999999999999999999999876543 2  24678999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHH---HHHHHHHHHH-HHH-----HhchhhhhhccccccChHHHHH
Q 018904          207 IMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWL---YVFGMAFNAV-AIV-----IQDFDAVMNKGFFHGYSFITVL  277 (349)
Q Consensus       207 ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l---~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~l  277 (349)
                      .....+++.+|++-|..|+.....+-   -....++   .++-.++.-. ..+     ++++++         +....|.
T Consensus       138 ~~AV~SA~~aAlYKV~FK~~iGnAn~---Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qs---------FA~~PWG  205 (290)
T KOG4314|consen  138 ACAVGSAFMAALYKVLFKMFIGNANF---GDAAHFMSCLGFFNLCFISFPALILAFTGVEHLQS---------FAAAPWG  205 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCcc---hhHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHH---------HhhCCch
Confidence            99999999999999999988765321   1111222   2232222211 111     122221         1111222


Q ss_pred             HHHHHHHHHHHHHHHHH----HhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcC
Q 018904          278 MILNHALSGIAVSMVMK----YADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSA  344 (349)
Q Consensus       278 ~i~~~a~~g~~~~~~~k----~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~  344 (349)
                      .....+.-.....+...    ....+..+.-..++....+.+..+.-+-..+..++.|.+++..|..+.-.
T Consensus       206 ~l~G~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiii  276 (290)
T KOG4314|consen  206 CLCGAAGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIII  276 (290)
T ss_pred             hhhhHHHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheec
Confidence            22211111111111111    11222333333344556777777766777888999999999999776543

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.71  E-value=4.8e-07  Score=75.97  Aligned_cols=140  Identities=12%  Similarity=0.165  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHHhHHHHHHHHhhcc---CCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC--Cccc-----cccc
Q 018904           48 SVVTLALTVLTSSQAILIVWSKRA---GKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDD--NRLS-----TTLD  117 (349)
Q Consensus        48 ~~~l~~~~~~~s~~~i~~k~s~~~---~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~--~~~~-----~~~~  117 (349)
                      +++.+...+..+...+..|...++   .+++.++.+..+......++++++....  .++.....  ....     ...+
T Consensus         2 ~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~   79 (153)
T PF03151_consen    2 FILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFL--LEGPQLSSFFSEIFGEELSSDPN   79 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHH--HhhhhhhhHHHHhhhhhhcchHH
Confidence            456667888889999888764432   2467889999999999998888886532  22211000  0000     0224


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhc
Q 018904          118 EVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA  189 (349)
Q Consensus       118 ~l~~~~i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv  189 (349)
                      ........|++....|...|..++++++.+++++.+.|.+.+.++++++++|+++..|+.|+.+.++|+..-
T Consensus        80 ~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Y  151 (153)
T PF03151_consen   80 FIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLY  151 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhee
Confidence            455667778888999999999999999999999999999999999999999999999999999999998753

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=98.64  E-value=3.4e-07  Score=73.54  Aligned_cols=125  Identities=17%  Similarity=0.250  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccChHHHHHHHHHHHHHHHHHHHHH
Q 018904          214 LLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVSMVM  293 (349)
Q Consensus       214 ~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~a~~g~~~~~~~  293 (349)
                      ++||.+.++.|+..++.+  + ...+.+....+.+ ..+.....+..+..+. ....+.......++..+++..+..+.+
T Consensus         1 ~~~a~~~~~~k~~~~~~~--~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~   75 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKKIS--P-LSITFWRFLIAGI-LLILLLILGRKPFKNL-SPRQWLWLLFLGLLGTALAYLLYFYAL   75 (126)
T ss_pred             ceeeeHHHHHHHHhccCC--H-HHHHHHHHHHHHH-HHHHHHhhccccccCC-ChhhhhhhhHhhccceehHHHHHHHHH
Confidence            468889999999988754  2 3333444444443 2222222121110000 000011112222233455566677788


Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhc
Q 018904          294 KYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHS  343 (349)
Q Consensus       294 k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~  343 (349)
                      ++.+..........+|+++.++++++++|+++..+++|.++++.|+.+.+
T Consensus        76 ~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   76 KYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             HhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            99888888888999999999999999999999999999999999998753

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.60  E-value=3.5e-07  Score=72.96  Aligned_cols=69  Identities=10%  Similarity=0.091  Sum_probs=62.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhcc
Q 018904          122 YPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQ  190 (349)
Q Consensus       122 ~~i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~  190 (349)
                      .++.-++|..+..+...+++.+|.+.+..+.++.++++++++++++|||++.+||+|+.+.++|++++.
T Consensus        40 ~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         40 LGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            333335588899999999999999999999999999999999999999999999999999999998875

>COG2510 Predicted membrane protein [Function unknown]

Probab=98.59  E-value=7.3e-07  Score=71.19  Aligned_cols=128  Identities=16%  Similarity=0.280  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHHHHHHHH-hchhhhhhccccccChHHHHHHHHHHH
Q 018904          206 WIMAIVMALLSGFAGVYTEAIMKKRPSR-NINVQNFWLYVFGMAFNAVAIVI-QDFDAVMNKGFFHGYSFITVLMILNHA  283 (349)
Q Consensus       206 ~ll~l~a~~~~al~~v~~e~~~k~~~~~-~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~a  283 (349)
                      .++.+++++++++..++.|--.++.++. ...+++.    ...++....... ..++...+      .+...|+.+...+
T Consensus         5 ~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRti----Vi~~~l~~v~~~~g~~~~~~~------~~~k~~lflilSG   74 (140)
T COG2510           5 IIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTI----VILIFLLIVLLVTGNWQAGGE------IGPKSWLFLILSG   74 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHH----HHHHHHHHHHHhcCceecccc------cCcceehhhhHHH
Confidence            4678999999999999998777765541 1122222    222222222221 22221111      2333344333323


Q ss_pred             ----HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhc
Q 018904          284 ----LSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHS  343 (349)
Q Consensus       284 ----~~g~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~  343 (349)
                          ++..+..+.+|.-++.+..+.+..++++++++|++++||++|..+++|..+|.+|..+..
T Consensus        75 la~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs  138 (140)
T COG2510          75 LAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence                333444455566666666777889999999999999999999999999999999987654

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=98.49  E-value=5.8e-06  Score=79.44  Aligned_cols=142  Identities=17%  Similarity=0.136  Sum_probs=91.0

Q ss_pred             hhhHHHHHHHHHHHHHhHHHHHHHHhhccCCccchHH-HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccc-hhh
Q 018904           43 NWKRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVT-TANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLD-EVI  120 (349)
Q Consensus        43 ~~~~~~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~-~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~-~l~  120 (349)
                      ++..+..++++.++.|+...++.|....    +|++. ...++......+.+.+...  ..+..  +.......|. ..+
T Consensus       186 ~~~lG~~l~l~aa~~wa~~~il~~~~~~----~~~~~~~~t~~~~~~~~~~~~~~~l--~~~~~--~~~~~~~~~~~~~~  257 (358)
T PLN00411        186 DWLIGGALLTIQGIFVSVSFILQAHIMS----EYPAAFTVSFLYTVCVSIVTSMIGL--VVEKN--NPSVWIIHFDITLI  257 (358)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCcHhHHHHHHHHHHHHHHHHHHH--HHccC--CcccceeccchHHH
Confidence            3444667777788999988888765432    34332 3344444433332222221  11111  0011111111 111


Q ss_pred             hhhHHHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhcccc
Q 018904          121 VYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  192 (349)
Q Consensus       121 ~~~i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~  192 (349)
                      .....++.-.+...++++++++++++.+++...+.|++++++++++++|+++..|++|.++.+.|+.++..+
T Consensus       258 ~i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~  329 (358)
T PLN00411        258 TIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWG  329 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence            111122222346678999999999999999999999999999999999999999999999999999998754

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=98.47  E-value=1.1e-05  Score=75.58  Aligned_cols=72  Identities=18%  Similarity=0.284  Sum_probs=63.8

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccc
Q 018904          118 EVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL  191 (349)
Q Consensus       118 ~l~~~~i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~  191 (349)
                      ..|..+.  +++.+.+.+.+.|+.+.|++..+=+.....++.++++.+++|||++++.|.|..+.++|.+++..
T Consensus        51 ~~W~~G~--~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~  122 (300)
T PF05653_consen   51 PLWWIGL--LLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVI  122 (300)
T ss_pred             HHHHHHH--HHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEE
Confidence            3445555  34678889999999999999999999999999999999999999999999999999999987653

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=98.47  E-value=5.6e-06  Score=77.45  Aligned_cols=134  Identities=13%  Similarity=0.078  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhHH
Q 018904           46 RKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIP  125 (349)
Q Consensus        46 ~~~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i~  125 (349)
                      .+.++.++..+.|+...+..|...+    ++++.... ...++..++..+...  . ...  .   ...++.........
T Consensus       148 ~G~ll~l~aa~~~a~~~v~~r~~~~----~~~~~~~~-~~~~~~~~~l~~~~~--~-~~~--~---~~~~~~~~~~~l~l  214 (293)
T PRK10532        148 TGAALALGAGACWAIYILSGQRAGA----EHGPATVA-IGSLIAALIFVPIGA--L-QAG--E---ALWHWSILPLGLAV  214 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc----cCCchHHH-HHHHHHHHHHHHHHH--H-ccC--c---ccCCHHHHHHHHHH
Confidence            4777888889999999999887642    24454443 333444444444431  1 111  0   01122221111223


Q ss_pred             HHH-HHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhcccc
Q 018904          126 AVL-YLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  192 (349)
Q Consensus       126 ~ll-~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~  192 (349)
                      |++ -.+...++++++++++++.++++..++|++.+++++++++|+++..||+|..+.+.|++.....
T Consensus       215 gv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~  282 (293)
T PRK10532        215 AILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLT  282 (293)
T ss_pred             HHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence            333 3567789999999999999999999999999999999999999999999999999999887543

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.45  E-value=1.4e-06  Score=81.76  Aligned_cols=142  Identities=8%  Similarity=0.005  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC-ccc-----cccchh
Q 018904           46 RKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDN-RLS-----TTLDEV  119 (349)
Q Consensus        46 ~~~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~-~~~-----~~~~~l  119 (349)
                      .+.++.++..+.|+.+.+..|....  ++++++.+..+.......+..+|+..  ..+ +..... ...     ......
T Consensus       145 ~G~~~~l~a~~~~a~~~v~~k~~~~--~~~~~~~~~~~~~~~~~~~~l~p~~~--~~~-~~~~~~~~~~~~~~~~~~~~~  219 (302)
T TIGR00817       145 AGFLSAMISNITFVSRNIFSKKAMT--IKSLDKTNLYAYISIMSLFLLSPPAF--ITE-GPPFLPHGFMQAISGVNVTKI  219 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhc--cCCCCcccHHHHHHHHHHHHHHHHHH--HHc-chHHHHHHHHHhhcccCchHH
Confidence            4777788888999999888876543  13578888888888777777777652  111 100000 000     011111


Q ss_pred             hh-hhHHHH-HHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhcccc
Q 018904          120 IV-YPIPAV-LYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  192 (349)
Q Consensus       120 ~~-~~i~~l-l~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~  192 (349)
                      +. ....+. .+...|.+.|.+++++++.++++....+|++++++++++++|+++..|++|..+.+.|+.+.+..
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~  294 (302)
T TIGR00817       220 YTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRV  294 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHH
Confidence            11 223333 45567788889999999999999999999999999999999999999999999999999988654

specificities overlap.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.44  E-value=7.9e-06  Score=78.43  Aligned_cols=143  Identities=11%  Similarity=0.089  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHhhccC---CccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-C-CC----Cccc-cc
Q 018904           46 RKSVVTLALTVLTSSQAILIVWSKRAG---KYEYSVTTANFLVETLKCALSLAALARIWNHEGV-T-DD----NRLS-TT  115 (349)
Q Consensus        46 ~~~~~l~~~~~~~s~~~i~~k~s~~~~---~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~-~-~~----~~~~-~~  115 (349)
                      .+.++.++..+.++.+.+..|...++.   ++++++.........+..++++|+...  .+... . ..    .... ..
T Consensus       194 ~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~--~e~~~~~~~~~~~~~~~~~~~  271 (350)
T PTZ00343        194 LAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLF--FEGKKWVPVWTNYTANMTNYT  271 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHhhhcccccc
Confidence            477778888999999999988754321   124666666666667777777776531  11100 0 00    0000 01


Q ss_pred             cch-hhhhhHHHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhcc
Q 018904          116 LDE-VIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQ  190 (349)
Q Consensus       116 ~~~-l~~~~i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~  190 (349)
                      +.. +......++.|..+|.+.|++++++++.++++...++|+++.++++++++|+++..|++|..+.+.|+.+..
T Consensus       272 ~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs  347 (350)
T PTZ00343        272 KGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS  347 (350)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence            111 123344566788999999999999999999999999999999999999999999999999999999998754

>PRK11689 aromatic amino acid exporter; Provisional

Probab=98.44  E-value=6.6e-06  Score=77.05  Aligned_cols=133  Identities=11%  Similarity=-0.002  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhHH
Q 018904           46 RKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIP  125 (349)
Q Consensus        46 ~~~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i~  125 (349)
                      .+.++.++..+.|+...+..|...+    ++++.+..+.   ...+...+...  . .... .   ...++.........
T Consensus       156 ~G~~~~l~aa~~~A~~~v~~k~~~~----~~~~~~~~~~---~~~~~l~~~~~--~-~~~~-~---~~~~~~~~~~l~~~  221 (295)
T PRK11689        156 LSYGLAFIGAFIWAAYCNVTRKYAR----GKNGITLFFI---LTALALWIKYF--L-SPQP-A---MVFSLPAIIKLLLA  221 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccC----CCCchhHHHH---HHHHHHHHHHH--H-hcCc-c---ccCCHHHHHHHHHH
Confidence            3677888899999999999887642    2344443221   11122222111  2 1110 1   11223333333344


Q ss_pred             HHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhcccc
Q 018904          126 AVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  192 (349)
Q Consensus       126 ~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~  192 (349)
                      ++.-.+...++++++++++++..+++.++.|++.+++++++++|+++..||+|.++.+.|+.+....
T Consensus       222 ~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~  288 (295)
T PRK11689        222 AAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLA  288 (295)
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhh
Confidence            4445668889999999999999999999999999999999999999999999999999999887543

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=98.39  E-value=9.5e-06  Score=75.85  Aligned_cols=136  Identities=13%  Similarity=0.019  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhHH
Q 018904           46 RKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIP  125 (349)
Q Consensus        46 ~~~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i~  125 (349)
                      .+.++.++..+.|+...+..|....   + . +.........+...+..++.   .....  ... ...+.+........
T Consensus       150 ~G~l~~l~a~~~~a~~~~~~~~~~~---~-~-~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~-~~~~~~~~~~i~~l  218 (292)
T PRK11272        150 WGAILILIASASWAFGSVWSSRLPL---P-V-GMMAGAAEMLAAGVVLLIAS---LLSGE--RLT-ALPTLSGFLALGYL  218 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCC---C-c-chHHHHHHHHHHHHHHHHHH---HHcCC--ccc-ccCCHHHHHHHHHH
Confidence            4677777888899998888766432   1 1 23333444444444444443   21111  100 11122333233333


Q ss_pred             HHH-HHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhcccc
Q 018904          126 AVL-YLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  192 (349)
Q Consensus       126 ~ll-~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~  192 (349)
                      +++ -.+...+++++++++++++.+++..+.|++.++++++++||+++..||.|..+.+.|+.+....
T Consensus       219 ~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~  286 (292)
T PRK11272        219 AVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLG  286 (292)
T ss_pred             HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            443 3567889999999999999999999999999999999999999999999999999999887543

>PRK13499 rhamnose-proton symporter; Provisional

Probab=98.38  E-value=0.00051  Score=65.26  Aligned_cols=170  Identities=11%  Similarity=-0.037  Sum_probs=111.8

Q ss_pred             hhHHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccc-cccchhhhh
Q 018904           44 WKRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLS-TTLDEVIVY  122 (349)
Q Consensus        44 ~~~~~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~-~~~~~l~~~  122 (349)
                      .-.+++.+++..+.+++..+-.|..++..-+.|.. ...++.+++.-.. ...+.  .+..    ..-+. .+.+.+..-
T Consensus         5 ~~~G~~~~~i~~~~~GS~~~p~K~~k~w~wE~~W~-v~gi~~wl~~~~~-~g~~~--~~~f----~~~~~~~~~~~~~~~   76 (345)
T PRK13499          5 IILGIIWHLIGGASSGSFYAPFKKVKKWSWETMWS-VGGIFSWLILPWL-IAALL--LPDF----WAYYSSFSGSTLLPV   76 (345)
T ss_pred             hHHHHHHHHHHHHHhhcccccccccCCCchhHHHH-HHHHHHHHHHHHH-HHHHH--hhhH----HHHHHhcCHHHHHHH
Confidence            44678889999999999999988876543344433 2222333332110 01110  0000    00011 234555566


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCChHHHHHH-hhhHHHHHHHHHHHHhcCCC---c----hHHHHHHHHHHhhhhhccc---
Q 018904          123 PIPAVLYLVKNLLQYYIFAYVDAPGYQIL-KNLNIISTGVLYRIILKKKL---S----EIQWAAFILLCCGCTTAQL---  191 (349)
Q Consensus       123 ~i~~ll~~~~n~l~~~al~~~~~~~~~ll-~~~~pl~talls~~~Lkekl---s----~~qw~gl~l~~~Gv~lv~~---  191 (349)
                      .+.|++-.+.|..++.+.+++..+...-+ ..++.+..+++..++++|=-   +    ..-.+|+++.++|+++...   
T Consensus        77 ~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~  156 (345)
T PRK13499         77 FLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQ  156 (345)
T ss_pred             HHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhh
Confidence            77888899999999999999999965544 58899999999999988532   3    3356677888889988876   


Q ss_pred             -cCCCC----cccccchhHHHHHHHHHHHHHHHHH
Q 018904          192 -NSNSD----RVLQTPLQGWIMAIVMALLSGFAGV  221 (349)
Q Consensus       192 -~~~~~----~~~~~~~~G~ll~l~a~~~~al~~v  221 (349)
                       .+..+    ....+.-.|+++.+++.+.+++++.
T Consensus       157 ~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~  191 (345)
T PRK13499        157 LKERKMGIKKAEEFNLKKGLILAVMSGIFSACFSF  191 (345)
T ss_pred             hcccccccccccccchHhHHHHHHHHHHHHHHHHH
Confidence             33211    1123567899999999999999883

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=98.35  E-value=3.5e-06  Score=78.29  Aligned_cols=63  Identities=13%  Similarity=0.120  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhh
Q 018904          126 AVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTT  188 (349)
Q Consensus       126 ~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~l  188 (349)
                      ++...+.+.++++++++.|++..+.+.++.|++..+++++++||+++..||.|..+.++|+.+
T Consensus       218 ~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       218 GLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            344567888999999999999999999999999999999999999999999999999999875

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.29  E-value=4.7e-05  Score=62.29  Aligned_cols=121  Identities=17%  Similarity=0.116  Sum_probs=81.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccChHHHHHHHHHHH
Q 018904          204 QGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHA  283 (349)
Q Consensus       204 ~G~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~a  283 (349)
                      .|+++++.+.++.+.+.+..|+-+++.++.+..   .    ..  ........ +            ...+.++.+...+
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~---~----~~--~~~~~~~~-~------------p~~~i~lgl~~~~   59 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHA---W----DF--IAALLAFG-L------------ALRAVLLGLAGYA   59 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccch---h----HH--HHHHHHHh-c------------cHHHHHHHHHHHH
Confidence            478889999999999999999877765431110   1    00  01110100 0            0114555555556


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH--HcCCcchHHHHHHHHHHHHHhhhhcCCC
Q 018904          284 LSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVF--LFGFHLSLAFFLGSIVVSVSVYLHSAGK  346 (349)
Q Consensus       284 ~~g~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~--lfge~lt~~~~lG~~lV~~gv~l~~~~~  346 (349)
                      +...+..++++..+........+....+..+.++.  +|||++|+.+++|.++|+.|+++.++++
T Consensus        60 la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~  124 (129)
T PRK02971         60 LSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT  124 (129)
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence            66667778888877666665555666667777774  8999999999999999999999887643

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=98.18  E-value=0.0001  Score=69.10  Aligned_cols=144  Identities=11%  Similarity=0.009  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCc-cccccchhhhhhH
Q 018904           46 RKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNR-LSTTLDEVIVYPI  124 (349)
Q Consensus        46 ~~~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~-~~~~~~~l~~~~i  124 (349)
                      .+-++.++..+.|+...++.|...+. ..+.......+....+..+.......  ..+........ ...++..+.....
T Consensus       143 ~G~~l~l~aal~~a~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~  219 (299)
T PRK11453        143 LGFMLTLAAAFSWACGNIFNKKIMSH-STRPAVMSLVVWSALIPIIPFFVASL--ILDGSATMIHSLVTIDMTTILSLMY  219 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcc-cCccchhHHHHHHHHHHHHHHHHHHH--HhcCchhhhhhhccCCHHHHHHHHH
Confidence            46677778889999999998765321 11111222233332232221111110  11111000000 0112233333333


Q ss_pred             HHHH-HHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhcccc
Q 018904          125 PAVL-YLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  192 (349)
Q Consensus       125 ~~ll-~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~  192 (349)
                      .+++ -.+...+++.+++++++++.+.+..+.|++.+++++++++|+++..||+|..+.++|+.+...+
T Consensus       220 l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~  288 (299)
T PRK11453        220 LAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFG  288 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcc
Confidence            3333 3467778999999999999999999999999999999999999999999999999999887654

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=98.11  E-value=6.9e-05  Score=70.48  Aligned_cols=145  Identities=16%  Similarity=0.133  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhHH
Q 018904           46 RKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIP  125 (349)
Q Consensus        46 ~~~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i~  125 (349)
                      .+++++++..+..+.+.+.-+...+  +++.++.+.++...++.+++..+........+..+..+....+..-.....+.
T Consensus       154 ~G~~ll~~sl~~~a~~~~~qe~~~~--~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~  231 (303)
T PF08449_consen  154 LGIILLLLSLLLDAFTGVYQEKLFK--KYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLF  231 (303)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHH
Confidence            3888888888999999888765443  35667899999999999887776653200111110111111122222334444


Q ss_pred             HHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhcccc
Q 018904          126 AVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  192 (349)
Q Consensus       126 ~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~  192 (349)
                      ++.........+.-.+..++.+.+++..++-+++.+++..++++++++.||.|+++.+.|..+-...
T Consensus       232 s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~  298 (303)
T PF08449_consen  232 SLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYA  298 (303)
T ss_pred             HHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHh
Confidence            5555666667777789999999999999999999999999999999999999999999999886543

; GO: 0055085 transmembrane transport

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.09  E-value=5.3e-05  Score=70.80  Aligned_cols=135  Identities=11%  Similarity=0.031  Sum_probs=95.6

Q ss_pred             hhhHHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhh
Q 018904           43 NWKRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVY  122 (349)
Q Consensus        43 ~~~~~~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~  122 (349)
                      +.+++.+..++..+.++...+..|...      ++|.+.+|....--++.+..+.. .+++.+  +.     ..+..+..
T Consensus       149 ~~~~Gi~~~l~sg~~y~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~--~~-----~~~~~~~~  214 (290)
T TIGR00776       149 NFKKGILLLLMSTIGYLVYVVVAKAFG------VDGLSVLLPQAIGMVIGGIIFNL-GHILAK--PL-----KKYAILLN  214 (290)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHcC------CCcceehhHHHHHHHHHHHHHHH-HHhccc--ch-----HHHHHHHH
Confidence            335677777888888999999988653      45555544333321222222211 021111  11     11233344


Q ss_pred             hHHHHHHHHHHHHHHHHHh-cCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHH----HHHHHHHhhhhhccc
Q 018904          123 PIPAVLYLVKNLLQYYIFA-YVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQW----AAFILLCCGCTTAQL  191 (349)
Q Consensus       123 ~i~~ll~~~~n~l~~~al~-~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw----~gl~l~~~Gv~lv~~  191 (349)
                      .+.|++..+.+.+++.+.+ +.+++.+.++.+..|+..++++++++||+.+++|+    +|.++.+.|+.++..
T Consensus       215 ~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~  288 (290)
T TIGR00776       215 ILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI  288 (290)
T ss_pred             HHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence            5577888889999999999 99999999999999999999999999999999999    999999999988753

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.05  E-value=4.2e-05  Score=62.57  Aligned_cols=67  Identities=12%  Similarity=0.022  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHH--HhcCCCchHHHHHHHHHHhhhhhccccC
Q 018904          127 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRI--ILKKKLSEIQWAAFILLCCGCTTAQLNS  193 (349)
Q Consensus       127 ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~--~Lkekls~~qw~gl~l~~~Gv~lv~~~~  193 (349)
                      ++|.++..++.++++..|++.+.-+.+..+..+++.++.  ++||+++..||+|+.+.++|+.++..++
T Consensus        56 ~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~  124 (129)
T PRK02971         56 AGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT  124 (129)
T ss_pred             HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence            348889999999999999999999999999889888885  8999999999999999999999987543

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=98.04  E-value=0.00027  Score=66.24  Aligned_cols=137  Identities=13%  Similarity=0.162  Sum_probs=87.3

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHh-chhhhhhccccccChHHHH--H
Q 018904          201 TPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQ-DFDAVMNKGFFHGYSFITV--L  277 (349)
Q Consensus       201 ~~~~G~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--l  277 (349)
                      +...|++++++++++|+...++.|.. .+.+  +....... ..++.++..+..... +.++...  .........+  .
T Consensus         5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~--~~~~~~~R-~~~a~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~   78 (296)
T PRK15430          5 QTRQGVLLALAAYFIWGIAPAYFKLI-YYVP--ADEILTHR-VIWSFFFMVVLMSICRQWSYLKT--LIQTPQKIFMLAV   78 (296)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHh-cCCC--HHHHHHHH-HHHHHHHHHHHHHHHccHHHHHH--HHcCHHHHHHHHH
Confidence            45689999999999999999999653 3322  33333333 334443333322221 1111100  0101111111  2


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhc
Q 018904          278 MILNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHS  343 (349)
Q Consensus       278 ~i~~~a~~g~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~  343 (349)
                      ..+..+....+..+.+++.+....+...+..|+++.++++++++|+++..+++|.++.+.|+.+..
T Consensus        79 ~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~  144 (296)
T PRK15430         79 SAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL  144 (296)
T ss_pred             HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence            223334445566667788888888888899999999999999999999999999999999988653

>TIGR00688 rarD rarD protein

Probab=97.90  E-value=0.00066  Score=62.05  Aligned_cols=135  Identities=13%  Similarity=0.179  Sum_probs=81.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHH-hchhhh-hhccccccChHHHHH--HH
Q 018904          204 QGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVI-QDFDAV-MNKGFFHGYSFITVL--MI  279 (349)
Q Consensus       204 ~G~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~l--~i  279 (349)
                      .|.+++++++++|+...+..|. ..+.+   .....+.=..++.++..+.... .+++.. ...............  .-
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~~---~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   77 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKL-LKPLP---ATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCG   77 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHH-hccCC---HHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHH
Confidence            4888999999999999999986 33332   2222222233344333322211 111110 000000000111111  11


Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhh
Q 018904          280 LNHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLH  342 (349)
Q Consensus       280 ~~~a~~g~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~  342 (349)
                      +..+....+..+.+++.+........++.|++++++++++++|+++..+++|.++.+.|+.+.
T Consensus        78 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li  140 (256)
T TIGR00688        78 LLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISN  140 (256)
T ss_pred             HHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            123334455566678877777777788999999999999999999999999999999998754

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.84  E-value=0.00017  Score=58.12  Aligned_cols=70  Identities=11%  Similarity=0.156  Sum_probs=61.3

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCChHHHHHH-hhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhcccc
Q 018904          123 PIPAVLYLVKNLLQYYIFAYVDAPGYQIL-KNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  192 (349)
Q Consensus       123 ~i~~ll~~~~n~l~~~al~~~~~~~~~ll-~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~  192 (349)
                      .+.-++|.++..+...+++++|.+.+-.+ .....+.+++.+.+++||+++..|++|+.+.++|++.+...
T Consensus        34 ~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~  104 (120)
T PRK10452         34 ILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSG  104 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence            34446688899999999999999965555 58999999999999999999999999999999999988654

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.80  E-value=0.0002  Score=56.62  Aligned_cols=69  Identities=16%  Similarity=0.198  Sum_probs=60.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHhcCChH-HHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhcc
Q 018904          122 YPIPAVLYLVKNLLQYYIFAYVDAP-GYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQ  190 (349)
Q Consensus       122 ~~i~~ll~~~~n~l~~~al~~~~~~-~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~  190 (349)
                      ..+.-++|.++..+.-.+++++|.+ .|++-.....+.+++.+.+++||++++.|++|+.+.+.|++.+.
T Consensus        38 ~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk  107 (109)
T PRK10650         38 GILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK  107 (109)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence            4444456788999999999999998 56666789999999999999999999999999999999998763

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.80  E-value=0.00024  Score=55.81  Aligned_cols=69  Identities=13%  Similarity=0.224  Sum_probs=60.3

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCChH-HHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccc
Q 018904          123 PIPAVLYLVKNLLQYYIFAYVDAP-GYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL  191 (349)
Q Consensus       123 ~i~~ll~~~~n~l~~~al~~~~~~-~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~  191 (349)
                      .+.-++|..+..+...+++.+|.+ .|++-.....+.+++.+++++||++++.|++|+.+.++|++.+..
T Consensus        33 ~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l  102 (105)
T PRK11431         33 IITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL  102 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence            334456888999999999999988 566666799999999999999999999999999999999998743

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.79  E-value=0.00022  Score=55.71  Aligned_cols=70  Identities=19%  Similarity=0.252  Sum_probs=61.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHhcCChH-HHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccc
Q 018904          122 YPIPAVLYLVKNLLQYYIFAYVDAP-GYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL  191 (349)
Q Consensus       122 ~~i~~ll~~~~n~l~~~al~~~~~~-~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~  191 (349)
                      ..+.-+++.++..+.-.+++++|.+ .|++-.....+.+++.+++++||+++..|++++.+.++|++.+..
T Consensus        33 ~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~  103 (106)
T COG2076          33 SILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL  103 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence            3444456788889999999999988 567777999999999999999999999999999999999988754

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=97.73  E-value=0.0018  Score=59.53  Aligned_cols=133  Identities=20%  Similarity=0.143  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhH
Q 018904           46 RKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANF-LVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPI  124 (349)
Q Consensus        46 ~~~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf-~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i  124 (349)
                      .+.++.+...+.++.+.+..|...     +.++....+ ...........+..   ....     + ....+++......
T Consensus       154 ~g~~~~l~a~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-----~-~~~~~~~~~~~~~  219 (292)
T COG0697         154 LGLLLALAAALLWALYTALVKRLS-----RLGPVTLALLLQLLLALLLLLLFF---LSGF-----G-APILSRAWLLLLY  219 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc-----CCChHHHHHHHHHHHHHHHHHHHH---hccc-----c-ccCCHHHHHHHHH
Confidence            456677778888888887777553     233344443 22121122222222   1111     0 1123344445555


Q ss_pred             HHHHHH-HHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhcccc
Q 018904          125 PAVLYL-VKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  192 (349)
Q Consensus       125 ~~ll~~-~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~  192 (349)
                      .+++.. +...+++.+++..+++..+.+..+.|++..++++++++|+.+..|+.|..+.+.|+.+....
T Consensus       220 ~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         220 LGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            555545 58899999999999999999999999999999999999999999999999999999988653

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.72  E-value=0.0003  Score=55.82  Aligned_cols=69  Identities=16%  Similarity=0.202  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHHHHHhcCChHHHHHH-hhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhcccc
Q 018904          124 IPAVLYLVKNLLQYYIFAYVDAPGYQIL-KNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  192 (349)
Q Consensus       124 i~~ll~~~~n~l~~~al~~~~~~~~~ll-~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~  192 (349)
                      ..-++|.++..+...+++.+|.+.+-.+ .....+.+++.+++++||++++.|+.|+.+.++|++.+...
T Consensus        35 ~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~  104 (110)
T PRK09541         35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL  104 (110)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            3345688888999999999999965555 67899999999999999999999999999999999998653

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=97.69  E-value=0.0011  Score=52.83  Aligned_cols=61  Identities=11%  Similarity=0.100  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhc
Q 018904          283 ALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHS  343 (349)
Q Consensus       283 a~~g~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~  343 (349)
                      ++...+..++++..+........+++++++.++|+++|||++|..+++|.++++.|+.+..
T Consensus        48 ~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         48 GLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            3344556677777766655555568899999999999999999999999999999987654

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.64  E-value=0.0012  Score=60.55  Aligned_cols=124  Identities=13%  Similarity=0.029  Sum_probs=90.9

Q ss_pred             hhhhhHHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhh
Q 018904           41 LANWKRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVI  120 (349)
Q Consensus        41 ~~~~~~~~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~  120 (349)
                      ..+.++..+.+++.++.+....++.|+..      .++.+. ++-+.+..++...++.  ...+   +..+.+..|    
T Consensus       133 ~~~~~kgi~~Ll~stigy~~Y~~~~~~~~------~~~~~~-~lPqaiGm~i~a~i~~--~~~~---~~~~~k~~~----  196 (269)
T PF06800_consen  133 KSNMKKGILALLISTIGYWIYSVIPKAFH------VSGWSA-FLPQAIGMLIGAFIFN--LFSK---KPFFEKKSW----  196 (269)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHhcC------CChhHh-HHHHHHHHHHHHHHHh--hccc---ccccccchH----
Confidence            34556778888888888888888888854      344333 4456666665555442  1111   111112334    


Q ss_pred             hhhHHHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHH
Q 018904          121 VYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFI  180 (349)
Q Consensus       121 ~~~i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~  180 (349)
                      .-.+.|+++.+.|.+++++.+....++.-.+.|+.++..++-+.++|||+=+++++...+
T Consensus       197 ~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~  256 (269)
T PF06800_consen  197 KNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTL  256 (269)
T ss_pred             HhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHH
Confidence            447789999999999999999999999999999999999999999999999999886544

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=97.56  E-value=0.0025  Score=50.71  Aligned_cols=62  Identities=19%  Similarity=0.240  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcCCC
Q 018904          284 LSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGK  346 (349)
Q Consensus       284 ~~g~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~~~  346 (349)
                      .......+..++.++ .......+.|+++.++|+++|+|+++...++|.+++..|+.+...++
T Consensus        47 ~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~  108 (113)
T PF13536_consen   47 VAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSD  108 (113)
T ss_pred             HHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence            444556677788775 55566778999999999999999999999999999999998776554

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.53  E-value=0.00038  Score=64.36  Aligned_cols=66  Identities=23%  Similarity=0.355  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhcccc
Q 018904          127 VLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  192 (349)
Q Consensus       127 ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~  192 (349)
                      +.+.+.....|.|+.+-|++..+-+.++..+..++++..++|||++..-.+|..+.++|-.++...
T Consensus        72 ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~h  137 (335)
T KOG2922|consen   72 LTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIH  137 (335)
T ss_pred             HHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEe
Confidence            446889999999999999999999999999999999999999999999999999999999876543

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=97.40  E-value=0.00038  Score=65.36  Aligned_cols=142  Identities=12%  Similarity=0.093  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHH-HHHHHHHhhcCCCCCCccccccc-hhhhhh
Q 018904           46 RKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSL-AALARIWNHEGVTDDNRLSTTLD-EVIVYP  123 (349)
Q Consensus        46 ~~~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l-~~l~~~~~~~~~~~~~~~~~~~~-~l~~~~  123 (349)
                      .+.+...+.++..+.+-|+.|......+++.++.+......-+.+++.+ |+..   ..++.....-....|. +...+.
T Consensus       163 ~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~---~~~~~~~~~~~~~~~~~~~~~~~  239 (316)
T KOG1441|consen  163 FGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLD---YVEGNKFVGFLTAPWFVTFLILL  239 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHh---hhcccceeeeeccccchhhHHHH
Confidence            4666677788889999999887665445778888888777666666666 7652   2222111000111121 233445


Q ss_pred             HHHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhcc
Q 018904          124 IPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQ  190 (349)
Q Consensus       124 i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~  190 (349)
                      .-++++...|...|..+.+++|-++++....|=+++...++++++++++..|.+|..+.++|+.+-.
T Consensus       240 ~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~  306 (316)
T KOG1441|consen  240 LNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYS  306 (316)
T ss_pred             HHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHH
Confidence            5558889999999999999999999999999999999999999999999999999999999998764

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.38  E-value=0.0023  Score=51.55  Aligned_cols=63  Identities=27%  Similarity=0.299  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcCC
Q 018904          283 ALSGIAVSMVMKYADNIVK-VYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAG  345 (349)
Q Consensus       283 a~~g~~~~~~~k~~~~i~~-~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~~  345 (349)
                      ++.-.+++.++|+.+-... ...+....+.++++|+++|||++|+.+++|.++|+.|+...+..
T Consensus        41 ~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~  104 (120)
T PRK10452         41 SLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSG  104 (120)
T ss_pred             HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence            4444556667777542222 22245677889999999999999999999999999999877654

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=97.32  E-value=0.006  Score=54.78  Aligned_cols=128  Identities=16%  Similarity=0.069  Sum_probs=84.3

Q ss_pred             HHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhHHHHH-
Q 018904           50 VTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVL-  128 (349)
Q Consensus        50 ~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i~~ll-  128 (349)
                      +....-.+|+...+..|..-+    .-+-.+-+-....+..++.+|+-   ....+.    .+ .++.-+..-...|++ 
T Consensus       152 ~Al~AG~~Wa~YIv~G~r~g~----~~~g~~g~a~gm~vAaviv~Pig---~~~ag~----~l-~~p~ll~laLgvavlS  219 (292)
T COG5006         152 LALGAGACWALYIVLGQRAGR----AEHGTAGVAVGMLVAALIVLPIG---AAQAGP----AL-FSPSLLPLALGVAVLS  219 (292)
T ss_pred             HHHHHhHHHHHHHHHcchhcc----cCCCchHHHHHHHHHHHHHhhhh---hhhcch----hh-cChHHHHHHHHHHHHh
Confidence            344556778887777654321    11224445556666777777776   222221    11 122222111222222 


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhc
Q 018904          129 YLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA  189 (349)
Q Consensus       129 ~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv  189 (349)
                      -.+-..+..++++.+|..++.++.++.|.+-++..+++|+|++|..||+++....++.+=.
T Consensus       220 SalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~  280 (292)
T COG5006         220 SALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGS  280 (292)
T ss_pred             cccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc
Confidence            2345567889999999999999999999999999999999999999999998887766533

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=97.30  E-value=0.0011  Score=51.08  Aligned_cols=55  Identities=15%  Similarity=0.157  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHHhcCChHHH-HHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHH
Q 018904          127 VLYLVKNLLQYYIFAYVDAPGY-QILKNLNIISTGVLYRIILKKKLSEIQWAAFIL  181 (349)
Q Consensus       127 ll~~~~n~l~~~al~~~~~~~~-~ll~~~~pl~talls~~~Lkekls~~qw~gl~l  181 (349)
                      .+|..+..+...+++++|.+.+ .+......+.+++.+.+++||++|..||.|+.+
T Consensus        37 ~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~l   92 (93)
T PF00893_consen   37 VGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGL   92 (93)
T ss_dssp             HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheee
Confidence            4688899999999999999965 666689999999999999999999999999875

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.20  E-value=0.0048  Score=48.94  Aligned_cols=58  Identities=19%  Similarity=0.338  Sum_probs=43.7

Q ss_pred             HHHHHHHHHhhhHHHHHH--HHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcCC
Q 018904          287 IAVSMVMKYADNIVKVYS--TSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAG  345 (349)
Q Consensus       287 ~~~~~~~k~~~~i~~~~~--~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~~  345 (349)
                      .+++.++|..+ +...++  +.+..+.++++|+++|||++|+.+++|.++++.|+.+.+..
T Consensus        45 ~~l~~al~~ip-l~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~  104 (110)
T PRK09541         45 WLLAQTLAYIP-TGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL  104 (110)
T ss_pred             HHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            34455565544 222233  34577888999999999999999999999999999987764

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=97.13  E-value=0.0046  Score=58.04  Aligned_cols=117  Identities=13%  Similarity=0.166  Sum_probs=80.3

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccChHHHHHHHH
Q 018904          201 TPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMIL  280 (349)
Q Consensus       201 ~~~~G~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~  280 (349)
                      +...|.++.+.++++.+.+..++||-.++.+..+.....          .... ..              -++..|..++
T Consensus         4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~~----------~~~~-~l--------------~~~~W~~G~~   58 (300)
T PF05653_consen    4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAGS----------GGRS-YL--------------RRPLWWIGLL   58 (300)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc----------hhhH-HH--------------hhHHHHHHHH
Confidence            567899999999999999999999876654320110000          0000 00              0122233333


Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhh
Q 018904          281 NHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLH  342 (349)
Q Consensus       281 ~~a~~g~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~  342 (349)
                      ..+++...-...+.+++.....+...++.+++.+++..+++|+++...++|.++++.|..+.
T Consensus        59 ~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~li  120 (300)
T PF05653_consen   59 LMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLI  120 (300)
T ss_pred             HHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheee
Confidence            33444443344556678888888888999999999999999999999999999999998643

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=97.04  E-value=0.022  Score=54.12  Aligned_cols=141  Identities=12%  Similarity=-0.011  Sum_probs=94.7

Q ss_pred             hHHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhH
Q 018904           45 KRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPI  124 (349)
Q Consensus        45 ~~~~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i  124 (349)
                      -.+-++++...++++.+.++-+..-+    +.+..+..-+-.+..++++.+....  -+..  +......+++....+..
T Consensus       167 i~GDll~l~~a~lya~~nV~~E~~v~----~~~~~~~lg~~Glfg~ii~~iq~~i--le~~--~i~~~~w~~~~~~~~v~  238 (334)
T PF06027_consen  167 ILGDLLALLGAILYAVSNVLEEKLVK----KAPRVEFLGMLGLFGFIISGIQLAI--LERS--GIESIHWTSQVIGLLVG  238 (334)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHhcc----cCCHHHHHHHHHHHHHHHHHHHHHh--eehh--hhhccCCChhhHHHHHH
Confidence            45667888888899999888776432    3456666666666777766655421  1111  11122222332222222


Q ss_pred             HHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccC
Q 018904          125 PAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNS  193 (349)
Q Consensus       125 ~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~  193 (349)
                      -+++.+....+.-+.+++.+|+..++=.-+..+...++..+++|+++++..++|.++..+|+++....+
T Consensus       239 ~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~  307 (334)
T PF06027_consen  239 YALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAE  307 (334)
T ss_pred             HHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccC
Confidence            222233344455567888999988888889999999999999999999999999999999999986543

Some of the sequences in this family are annotated as putative membrane proteins.

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.00  E-value=0.0083  Score=46.89  Aligned_cols=65  Identities=29%  Similarity=0.262  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcCC
Q 018904          281 NHALSGIAVSMVMKYADNI-VKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAG  345 (349)
Q Consensus       281 ~~a~~g~~~~~~~k~~~~i-~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~~  345 (349)
                      ..++.-.+.+..+|+.+-- .-..-+-...+.+++.|+++|||+++...++|.++++.|+..-+..
T Consensus        39 ~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~  104 (106)
T COG2076          39 GYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG  104 (106)
T ss_pred             HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence            3344445667777775422 2233355678899999999999999999999999999999876543

>PRK11431 multidrug efflux system protein; Provisional

Probab=96.96  E-value=0.011  Score=46.48  Aligned_cols=63  Identities=16%  Similarity=0.071  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcCC
Q 018904          283 ALSGIAVSMVMKYADNI-VKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAG  345 (349)
Q Consensus       283 a~~g~~~~~~~k~~~~i-~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~~  345 (349)
                      ++...+++..+|..+-. .-+.-+....+.++++|+++|||++|+.+++|..+++.|+..-+..
T Consensus        40 ~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l~  103 (105)
T PRK11431         40 IVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKLS  103 (105)
T ss_pred             HHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcc
Confidence            33444556666664422 2233345677889999999999999999999999999999876543

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=96.83  E-value=0.0037  Score=49.65  Aligned_cols=69  Identities=17%  Similarity=0.283  Sum_probs=60.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhcCChHHHHHH-hhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhc
Q 018904          121 VYPIPAVLYLVKNLLQYYIFAYVDAPGYQIL-KNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA  189 (349)
Q Consensus       121 ~~~i~~ll~~~~n~l~~~al~~~~~~~~~ll-~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv  189 (349)
                      .|.+|=++|......+|+.+...|.+.+.-+ +++.-++|++.++++.+|..+++.|+|+.+.+.|+.++
T Consensus        43 ~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   43 KYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC  112 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence            3667777899999999999999999977666 69999999999988888888999999999999999765

Many members are annotated as potential transmembrane proteins.

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=96.79  E-value=0.018  Score=45.56  Aligned_cols=61  Identities=16%  Similarity=0.123  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhc
Q 018904          283 ALSGIAVSMVMKYADNI-VKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHS  343 (349)
Q Consensus       283 a~~g~~~~~~~k~~~~i-~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~  343 (349)
                      ++...+++.++|+.+-. .-..-+....+.+++.|+++|||++|+.+++|.++++.|+..-+
T Consensus        46 ~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk  107 (109)
T PRK10650         46 LAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK  107 (109)
T ss_pred             HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence            34445566666665422 12233456678899999999999999999999999999998754

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=96.43  E-value=0.029  Score=51.74  Aligned_cols=138  Identities=14%  Similarity=0.154  Sum_probs=94.9

Q ss_pred             hhhHHHHHHHHHHHHHhHHHHH-HHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC---ccccccch
Q 018904           43 NWKRKSVVTLALTVLTSSQAIL-IVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDN---RLSTTLDE  118 (349)
Q Consensus        43 ~~~~~~~~l~~~~~~~s~~~i~-~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~---~~~~~~~~  118 (349)
                      +...++.++..-.++.+..... -+.-+   ++..++...++-.++...+.....+.  ..........   +-+.-++|
T Consensus       169 ns~~G~~Ll~~~L~fDgfTn~tQd~lf~---~~k~s~~~mM~~vNLf~~i~~~~~li--~qg~~~~av~F~~~hp~~~~D  243 (327)
T KOG1581|consen  169 NSPIGILLLFGYLLFDGFTNATQDSLFK---KYKVSSLHMMFGVNLFSAILNGTYLI--LQGHLLPAVSFIKEHPDVAFD  243 (327)
T ss_pred             CchHhHHHHHHHHHHHhhHHhHHHHHhc---cCCccHhHHHHHHHHHHHHHHHHhhh--cCCCCchHHHHHHcChhHHHH
Confidence            3356777777655554443222 12222   46778899999998888777665541  1111111100   01122456


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhh
Q 018904          119 VIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTT  188 (349)
Q Consensus       119 l~~~~i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~l  188 (349)
                      +..+.   .+.++...+.|+-++.-.+-+.+.+.-+.=++..+++.+.+++++++.||.|+.+.|.|...
T Consensus       244 i~l~s---~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l  310 (327)
T KOG1581|consen  244 ILLYS---TCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL  310 (327)
T ss_pred             HHHHH---HhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence            54444   55577888888899999999999999999999999999999999999999999998888765

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=96.36  E-value=0.00045  Score=61.55  Aligned_cols=263  Identities=13%  Similarity=0.162  Sum_probs=150.9

Q ss_pred             HHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhHHHH
Q 018904           48 SVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAV  127 (349)
Q Consensus        48 ~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i~~l  127 (349)
                      ++..++-++.|++.+.+.   ..-|+.++...--+   -+-++++++...   +-..   +.    .+++.+..-.+.|.
T Consensus         4 ~liaL~P~l~WGsip~v~---~k~GG~p~qQ~lGt---T~GALifaiiv~---~~~~---p~----~T~~~~iv~~isG~   67 (288)
T COG4975           4 LLIALLPALGWGSIPLVA---NKFGGKPYQQTLGT---TLGALIFAIIVF---LFVS---PE----LTLTIFIVGFISGA   67 (288)
T ss_pred             HHHHHHHHHHhcccceee---eecCCChhHhhhhc---cHHHHHHHHHHh---eeec---Cc----cchhhHHHHHHhhh
Confidence            445556778898887763   22334444443222   222333444333   1111   11    23555666677788


Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHh-hhHHHHHHHHHHHHhcCCCchHHH----HHHHHHHhhhhhccccCCCCc---cc
Q 018904          128 LYLVKNLLQYYIFAYVDAPGYQILK-NLNIISTGVLYRIILKKKLSEIQW----AAFILLCCGCTTAQLNSNSDR---VL  199 (349)
Q Consensus       128 l~~~~n~l~~~al~~~~~~~~~ll~-~~~pl~talls~~~Lkekls~~qw----~gl~l~~~Gv~lv~~~~~~~~---~~  199 (349)
                      +.......+|-|.+++..+.+.=+. .++.+-+.+++++.++|--+..|.    .++++..+|+.+-..++..++   ..
T Consensus        68 ~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~~~~  147 (288)
T COG4975          68 FWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEEENP  147 (288)
T ss_pred             HhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccccccCh
Confidence            8888999999999999988776554 788889999999999998888775    467777888877766543221   12


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccChHHHHHHH
Q 018904          200 QTPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMI  279 (349)
Q Consensus       200 ~~~~~G~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i  279 (349)
                      ++.-.|+...+.+.+.+-.+.|..+...- +.-+.+..|..     |+++..+..-..+.+..        .+-.+|..+
T Consensus       148 ~n~kkgi~~L~iSt~GYv~yvvl~~~f~v-~g~saiLPqAi-----GMv~~ali~~~~~~~~~--------~~K~t~~ni  213 (288)
T COG4975         148 SNLKKGIVILLISTLGYVGYVVLFQLFDV-DGLSAILPQAI-----GMVIGALILGFFKMEKR--------FNKYTWLNI  213 (288)
T ss_pred             HhhhhheeeeeeeccceeeeEeeeccccc-cchhhhhHHHH-----HHHHHHHHHhhcccccc--------hHHHHHHHH
Confidence            23457877777788888777777764421 11113333332     44444433222111111        122344433


Q ss_pred             H---HHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHHHHHHHcCCcchHHH----HHHHHHHHHHhhh
Q 018904          280 L---NHALSGIAVSMVMKYADNIVKVY-STSVAMLLTAVVSVFLFGFHLSLAF----FLGSIVVSVSVYL  341 (349)
Q Consensus       280 ~---~~a~~g~~~~~~~k~~~~i~~~~-~~~~~~v~t~l~s~~lfge~lt~~~----~lG~~lV~~gv~l  341 (349)
                      .   .-+++.+.+-+.-...+ +..++ .+....+++++-|+++++|+=|..+    ++|..+++.|..+
T Consensus       214 i~G~~Wa~GNl~ml~a~~~~G-vAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~  282 (288)
T COG4975         214 IPGLIWAIGNLFMLLAAQKVG-VATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAIL  282 (288)
T ss_pred             hhHHHHHhhHHHHHHhhhhhc-eeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhh
Confidence            2   22334443322221111 11111 1234557889999999999988755    6777777777554

>TIGR00803 nst UDP-galactose transporter

Probab=96.27  E-value=0.069  Score=47.64  Aligned_cols=66  Identities=18%  Similarity=0.142  Sum_probs=58.9

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhh
Q 018904          123 PIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTT  188 (349)
Q Consensus       123 ~i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~l  188 (349)
                      ....++.++...+..+.++|.++.+.++...+.++++++++.++++|+++..||.|..+.+.|+.+
T Consensus       156 ~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l  221 (222)
T TIGR00803       156 WIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL  221 (222)
T ss_pred             HHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence            334455677888899999999999999999999999999999999999999999999999988753

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=96.16  E-value=0.27  Score=45.30  Aligned_cols=130  Identities=13%  Similarity=0.032  Sum_probs=92.9

Q ss_pred             HHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhHHHHHHHHH
Q 018904           53 ALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVK  132 (349)
Q Consensus        53 ~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i~~ll~~~~  132 (349)
                      .+++.++..+.+-|..+      .++.+-..+..+.-+..++..+.  +-....+  .-...+......+...|..-++-
T Consensus       155 ~la~sf~~Ygl~RK~~~------v~a~~g~~lE~l~l~p~al~yl~--~l~~~~~--~~~~~~~~~~~LLv~aG~vTavp  224 (293)
T COG2962         155 ALALSFGLYGLLRKKLK------VDALTGLTLETLLLLPVALIYLL--FLADSGQ--FLQQNANSLWLLLVLAGLVTAVP  224 (293)
T ss_pred             HHHHHHHHHHHHHHhcC------CchHHhHHHHHHHHhHHHHHHHH--HHhcCch--hhhcCCchHHHHHHHhhHHHHHH
Confidence            45666777777777764      34555545444444445555442  2221110  00112345556677777777888


Q ss_pred             HHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhcccc
Q 018904          133 NLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  192 (349)
Q Consensus       133 n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~  192 (349)
                      -.++-.|-+.+|.++..++.+..|...-+++.+++||+++..|+.+.+..-+|+++...+
T Consensus       225 L~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d  284 (293)
T COG2962         225 LLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSID  284 (293)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            888999999999999999999999999999999999999999999999999998887653

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=96.05  E-value=0.65  Score=38.37  Aligned_cols=131  Identities=15%  Similarity=0.178  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccChHHHHHHHHHHHHH
Q 018904          206 WIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALS  285 (349)
Q Consensus       206 ~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~a~~  285 (349)
                      .++.+.+..+-++++..+-++.++..+  .+..++.....|.+...+.....+..+..   .....+++.|+.=+..++.
T Consensus         3 ~lla~~aG~~i~~q~~~N~~L~~~~gs--~~~as~i~~~~G~i~~~i~~~~~~~~~~~---~~~~~p~w~~lGG~lG~~~   77 (138)
T PF04657_consen    3 ILLALLAGALIALQAAFNGQLGKALGS--PLVASFISFGVGFILLLIILLITGRPSLA---SLSSVPWWAYLGGLLGVFF   77 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCc--cHHHHHHHHHHHHHHHHHHHHHhcccccc---hhccCChHHhccHHHHHHH
Confidence            456677778888888888888777542  34444444455655555544433321111   1223345555432222222


Q ss_pred             HHHHHHHHHHhhhHHHHHHH-HHHHHHHHHHHHH-Hc---CCcchHHHHHHHHHHHHHhhh
Q 018904          286 GIAVSMVMKYADNIVKVYST-SVAMLLTAVVSVF-LF---GFHLSLAFFLGSIVVSVSVYL  341 (349)
Q Consensus       286 g~~~~~~~k~~~~i~~~~~~-~~~~v~t~l~s~~-lf---ge~lt~~~~lG~~lV~~gv~l  341 (349)
                      -....+.....+........ .-+.+.+.+++.+ +|   .+++++..++|.++++.|+++
T Consensus        78 V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   78 VLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            23334444444433332222 2234566666765 33   578999999999999999864

>PRK13499 rhamnose-proton symporter; Provisional

Probab=95.65  E-value=0.5  Score=45.12  Aligned_cols=76  Identities=9%  Similarity=0.158  Sum_probs=57.1

Q ss_pred             cchhhhhhHHHHHHHHHHHHHHHHHhcCChHHHHH---Hh-hhHHHHHHHHHHHHhcCCCc------hHHHHHHHHHHhh
Q 018904          116 LDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQI---LK-NLNIISTGVLYRIILKKKLS------EIQWAAFILLCCG  185 (349)
Q Consensus       116 ~~~l~~~~i~~ll~~~~n~l~~~al~~~~~~~~~l---l~-~~~pl~talls~~~Lkekls------~~qw~gl~l~~~G  185 (349)
                      +|+.....+.|++...+|.+++.+-+.++.....+   +. |+..++.++-.. ++||+=+      +.-++|+++.++|
T Consensus       257 ~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g  335 (345)
T PRK13499        257 ITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILA  335 (345)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHH
Confidence            57777778999999999999999998875543334   55 777677776666 6999877      5557777888888


Q ss_pred             hhhcccc
Q 018904          186 CTTAQLN  192 (349)
Q Consensus       186 v~lv~~~  192 (349)
                      .+++...
T Consensus       336 ~~lig~~  342 (345)
T PRK13499        336 ANIVGLG  342 (345)
T ss_pred             HHHHhhc
Confidence            8877653

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=95.31  E-value=0.053  Score=43.08  Aligned_cols=108  Identities=17%  Similarity=0.197  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccChHHHHHHHHHHHHHHHHHH
Q 018904          211 VMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHALSGIAVS  290 (349)
Q Consensus       211 ~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~a~~g~~~~  290 (349)
                      +-+++|++.+-+.||-.++.+....-.+ ..   -....    . +.              ++..+...+.+-.+.....
T Consensus         3 ~Vg~~WG~Tnpfik~g~~~~~~~~~~~~-~~---~~~~~----L-l~--------------n~~y~ipf~lNq~GSv~f~   59 (113)
T PF10639_consen    3 LVGILWGCTNPFIKRGSSGLEKVKASLQ-LL---QEIKF----L-LL--------------NPKYIIPFLLNQSGSVLFF   59 (113)
T ss_pred             eehHHhcCchHHHHHHHhhcCCccchHH-HH---HHHHH----H-HH--------------hHHHHHHHHHHHHHHHHHH
Confidence            3467899999999987776543111111 10   01101    1 10              2223334444555555555


Q ss_pred             HHHHHhhhHHHH-HHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhh
Q 018904          291 MVMKYADNIVKV-YSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYL  341 (349)
Q Consensus       291 ~~~k~~~~i~~~-~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l  341 (349)
                      +.+...|-.... .+++++-++|++.++++.+|..+...++|+++|+.|+.+
T Consensus        60 ~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L  111 (113)
T PF10639_consen   60 LLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL  111 (113)
T ss_pred             HHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence            666666644444 446888999999999988888899999999999999865

Many members are annotated as potential transmembrane proteins.

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=95.31  E-value=0.098  Score=40.09  Aligned_cols=51  Identities=29%  Similarity=0.333  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Q 018904          285 SGIAVSMVMKYADNIVK-VYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVV  335 (349)
Q Consensus       285 ~g~~~~~~~k~~~~i~~-~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV  335 (349)
                      .-.+.+..+|+.+-... ...+....+.+.+.|+++|||++|+.+++|.++|
T Consensus        42 s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   42 SFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            33455666666553332 2234567788999999999999999999999876

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=94.81  E-value=0.063  Score=48.78  Aligned_cols=131  Identities=11%  Similarity=0.124  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhHHHH
Q 018904           48 SVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAV  127 (349)
Q Consensus        48 ~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i~~l  127 (349)
                      .+..+..+++.++-.|+.|+.-++.++-.+.+--..    +.++.++...    ...+   .-.+.+.+|+.+.+...|+
T Consensus       193 t~aai~s~lf~asvyIilR~iGk~~h~~msvsyf~~----i~lV~s~I~~----~~ig---~~~lP~cgkdr~l~~~lGv  261 (346)
T KOG4510|consen  193 TVAAISSVLFGASVYIILRYIGKNAHAIMSVSYFSL----ITLVVSLIGC----ASIG---AVQLPHCGKDRWLFVNLGV  261 (346)
T ss_pred             hHHHHHhHhhhhhHHHHHHHhhccccEEEEehHHHH----HHHHHHHHHH----hhcc---ceecCccccceEEEEEehh
Confidence            445556777777778888887333222222221112    2222222221    1111   1234456777778888898


Q ss_pred             HHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhc
Q 018904          128 LYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA  189 (349)
Q Consensus       128 l~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv  189 (349)
                      +.+++..+.-.++|.=-++-.++...+..++..+.-.+++||-.+++.|.|.++.+...+.+
T Consensus       262 fgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~  323 (346)
T KOG4510|consen  262 FGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWV  323 (346)
T ss_pred             hhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHH
Confidence            88999999999999999999999999999999999999999999999999887665555444

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=94.66  E-value=1.9  Score=35.54  Aligned_cols=104  Identities=16%  Similarity=0.051  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHHhcCChHHHHHHhhhHH-
Q 018904           78 VTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNI-  156 (349)
Q Consensus        78 ~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~p-  156 (349)
                      |....++.....++++..+..  ..++.  ...+.+   +-.+.+...|++-...-.+..+....+.++...++.-+.- 
T Consensus        30 ~~~as~i~~~~G~i~~~i~~~--~~~~~--~~~~~~---~~p~w~~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl  102 (138)
T PF04657_consen   30 PLVASFISFGVGFILLLIILL--ITGRP--SLASLS---SVPWWAYLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQL  102 (138)
T ss_pred             cHHHHHHHHHHHHHHHHHHHH--Hhccc--ccchhc---cCChHHhccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence            556666666666665555442  22221  111121   1112233355665666667777889999997777765544 


Q ss_pred             HHHHHHHHH----HhcCCCchHHHHHHHHHHhhhhh
Q 018904          157 ISTGVLYRI----ILKKKLSEIQWAAFILLCCGCTT  188 (349)
Q Consensus       157 l~talls~~----~Lkekls~~qw~gl~l~~~Gv~l  188 (349)
                      +...++-.+    .-|+++++.|.+|+.+..+|+.+
T Consensus       103 ~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen  103 IASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            444445554    46899999999999999999864

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=94.24  E-value=0.33  Score=44.18  Aligned_cols=64  Identities=22%  Similarity=0.225  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcCCC
Q 018904          283 ALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGK  346 (349)
Q Consensus       283 a~~g~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~~~  346 (349)
                      ++...+....+++.|+..-.......+++|+++++++++.+++..||++..+...|+.+...++
T Consensus        28 ~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~   91 (244)
T PF04142_consen   28 AIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSS   91 (244)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCC
Confidence            3444556677888888888888888999999999999999999999999999999998876543

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=93.92  E-value=1.6  Score=41.68  Aligned_cols=151  Identities=13%  Similarity=0.053  Sum_probs=97.4

Q ss_pred             chhhhhhHHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCCCCCccccccc
Q 018904           39 SELANWKRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANF-LVETLKCALSLAALARIWNHEGVTDDNRLSTTLD  117 (349)
Q Consensus        39 ~~~~~~~~~~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf-~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~  117 (349)
                      .+.++-..+.++.++.+++++....+.|.-..+.+.+.+ ....| +..++.+++..|.+.. ...-+ .++-.+.++. 
T Consensus       240 ~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvd-i~lffGfvGLfnllllwP~l~i-L~~~~-~e~F~lP~~~-  315 (416)
T KOG2765|consen  240 LPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVD-IQLFFGFVGLFNLLLLWPPLII-LDFFG-EERFELPSST-  315 (416)
T ss_pred             CCccchhHHHHHHHHHHHHHHHHHHHHHhhccccccccc-HHHHHHHHHHHHHHHHhHHHHH-HHHhc-cCcccCCCCc-
Confidence            334444567788888889999998888764332223333 22222 3334445555543321 11111 1211122222 


Q ss_pred             hhhhhhHHHHH-HHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccccC
Q 018904          118 EVIVYPIPAVL-YLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLNS  193 (349)
Q Consensus       118 ~l~~~~i~~ll-~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~~  193 (349)
                      ......+.++. -.++..++-.|.-.+++-+.++-...++...++.-.++-++++|+.+.+|-+..++|.+++..+.
T Consensus       316 q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~  392 (416)
T KOG2765|consen  316 QFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISS  392 (416)
T ss_pred             eeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccc
Confidence            22222333333 46799999999999999999999999999988888888899999999999999999999887653

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=93.20  E-value=0.0086  Score=53.59  Aligned_cols=125  Identities=15%  Similarity=0.123  Sum_probs=84.4

Q ss_pred             hhhhhHHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccccchhh
Q 018904           41 LANWKRKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTLDEVI  120 (349)
Q Consensus        41 ~~~~~~~~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~l~  120 (349)
                      ..|.+++...++...+.+....++.+.-.      ++ ....++-..+..+++...+   -..++  +..    ..|+.+
T Consensus       147 ~~n~kkgi~~L~iSt~GYv~yvvl~~~f~------v~-g~saiLPqAiGMv~~ali~---~~~~~--~~~----~~K~t~  210 (288)
T COG4975         147 PSNLKKGIVILLISTLGYVGYVVLFQLFD------VD-GLSAILPQAIGMVIGALIL---GFFKM--EKR----FNKYTW  210 (288)
T ss_pred             hHhhhhheeeeeeeccceeeeEeeecccc------cc-chhhhhHHHHHHHHHHHHH---hhccc--ccc----hHHHHH
Confidence            33444554444445555555554444432      22 2223444556666666555   22221  111    235556


Q ss_pred             hhhHHHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHH
Q 018904          121 VYPIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFIL  181 (349)
Q Consensus       121 ~~~i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l  181 (349)
                      .-.+||+.....|..+++|-+....++.--++|+..+...+-..++||||=++++|..+..
T Consensus       211 ~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~i  271 (288)
T COG4975         211 LNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVII  271 (288)
T ss_pred             HHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhh
Confidence            6789999999999999999999999999999999999999999999999999999876543

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=93.06  E-value=0.17  Score=45.24  Aligned_cols=65  Identities=14%  Similarity=0.165  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhc
Q 018904          125 PAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTA  189 (349)
Q Consensus       125 ~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv  189 (349)
                      .|+.-.+...+.|.-..+..+-+-+++..+.-.||.+.++++++..++.+||+|-.+.|.|...=
T Consensus       247 ~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D  311 (337)
T KOG1580|consen  247 LAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTAD  311 (337)
T ss_pred             HHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhH
Confidence            34444667778888888999999999999999999999999999999999999999999988653

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=92.29  E-value=0.66  Score=41.22  Aligned_cols=112  Identities=9%  Similarity=0.093  Sum_probs=81.1

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccccc--cchhhhhhHHHHHHHHHHHHHHHHHhcCChHHHHHHh
Q 018904           75 EYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTT--LDEVIVYPIPAVLYLVKNLLQYYIFAYVDAPGYQILK  152 (349)
Q Consensus        75 ~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~--~~~l~~~~i~~ll~~~~n~l~~~al~~~~~~~~~ll~  152 (349)
                      ++-.+..+|...++.+.+.+.+-+  .-++. .+ ..+..+  -..+..+.+.|++-..-..+.-+-.+-++.++++++.
T Consensus       182 Nf~d~dtmfYnNllslPiL~~~s~--~~edw-s~-~n~annl~~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvG  257 (309)
T COG5070         182 NFKDFDTMFYNNLLSLPILLSFSF--LFEDW-SP-GNLANNLSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVG  257 (309)
T ss_pred             ccchhhHHHHhhhHHHHHHHHHHH--HhccC-Cc-chhhcCCChHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHH
Confidence            344577889999987665554432  12222 11 111112  2344567788877767777777788889999999999


Q ss_pred             hhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhcc
Q 018904          153 NLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQ  190 (349)
Q Consensus       153 ~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~  190 (349)
                      +++-...++-...+++|..+.....++++++...++-.
T Consensus       258 ALNKlp~alaGlvffdap~nf~si~sillGflsg~iYa  295 (309)
T COG5070         258 ALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYA  295 (309)
T ss_pred             HhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999987766643

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.94  E-value=1.2  Score=41.60  Aligned_cols=141  Identities=11%  Similarity=-0.039  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccc---chhhhh
Q 018904           46 RKSVVTLALTVLTSSQAILIVWSKRAGKYEYSVTTANFLVETLKCALSLAALARIWNHEGVTDDNRLSTTL---DEVIVY  122 (349)
Q Consensus        46 ~~~~~l~~~~~~~s~~~i~~k~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~~~~~~~~~~~~~~~~~~---~~l~~~  122 (349)
                      ++|..+..-.+..+...+.+|..-..  .+.+....++...++.+.......+. ..+..  +......+|   .-+..+
T Consensus       157 ~gY~w~~~n~~~~a~~~v~~kk~vd~--~~l~~~~lv~yNnl~~L~~l~~~~~~-~ge~~--~l~~~~~~~~~~~~~~~~  231 (314)
T KOG1444|consen  157 RGYSWALANCLTTAAFVVYVKKSVDS--ANLNKFGLVFYNNLLSLPPLLILSFI-TGELD--ALSLNFDNWSDSSVLVVM  231 (314)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhcc--ccccceeEEeehhHHHHHHHHHHHHH-hcchH--HHHhhcccccchhHHHHH
Confidence            36777777777777777777765332  23455667777777766554443321 11100  000000112   223456


Q ss_pred             hHHHHHHHHHHHHHHHHHhcCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhccc
Q 018904          123 PIPAVLYLVKNLLQYYIFAYVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQL  191 (349)
Q Consensus       123 ~i~~ll~~~~n~l~~~al~~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~  191 (349)
                      .+.+++-++-+.+.++..+..++.++++....+.+.+.+-..++.+++.++....|+.++++|-++-+.
T Consensus       232 ~lScv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~  300 (314)
T KOG1444|consen  232 LLSCVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSY  300 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhh
Confidence            777777888999999999999999999999888999999889999999999999999999999887654

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=90.70  E-value=5.7  Score=37.71  Aligned_cols=133  Identities=14%  Similarity=0.249  Sum_probs=73.6

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHH--HHHHHHHHHHH---HHHhchhhhhhccccccChH-H
Q 018904          201 TPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWL--YVFGMAFNAVA---IVIQDFDAVMNKGFFHGYSF-I  274 (349)
Q Consensus       201 ~~~~G~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l--~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~  274 (349)
                      ....|+++..+++++++...+=.||. |+-+    |+ +.|+  .+++.++....   ..++|..++..     ..+. .
T Consensus         4 ~ii~Gii~h~iGg~~~~sfy~P~kkv-k~Ws----WE-s~Wlv~gi~swli~P~~~a~l~ip~~~~i~~-----~~~~~~   72 (344)
T PF06379_consen    4 AIILGIIFHAIGGFASGSFYVPFKKV-KGWS----WE-SYWLVQGIFSWLIVPWLWALLAIPDFFSIYS-----ATPAST   72 (344)
T ss_pred             hHHHHHHHHHHHHHHhhhhccchhhc-CCcc----HH-HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHH-----hCChhH
Confidence            46789999999999999888877765 4432    22 2222  23333333221   11233322211     1111 1


Q ss_pred             HHHHH---HHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHcC-------CcchHHHHHHHHHHHHHhhhhc
Q 018904          275 TVLMI---LNHALSGIAVSMVMKYAD-NIVKVYSTSVAMLLTAVVSVFLFG-------FHLSLAFFLGSIVVSVSVYLHS  343 (349)
Q Consensus       275 ~~l~i---~~~a~~g~~~~~~~k~~~-~i~~~~~~~~~~v~t~l~s~~lfg-------e~lt~~~~lG~~lV~~gv~l~~  343 (349)
                      .+...   +.-+++++..+..+||.+ +...+.+.-+..++.+++--++.|       ++-....++|.++++.|+.+..
T Consensus        73 l~~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g  152 (344)
T PF06379_consen   73 LFWTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICG  152 (344)
T ss_pred             HHHHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHh
Confidence            11112   234678888888899975 223334444455566666444433       2233467899999999988765


Q ss_pred             C
Q 018904          344 A  344 (349)
Q Consensus       344 ~  344 (349)
                      +
T Consensus       153 ~  153 (344)
T PF06379_consen  153 K  153 (344)
T ss_pred             H
Confidence            3

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.09  E-value=0.21  Score=46.66  Aligned_cols=117  Identities=15%  Similarity=0.206  Sum_probs=79.0

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccChHHHHHHHH
Q 018904          201 TPLQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMIL  280 (349)
Q Consensus       201 ~~~~G~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~  280 (349)
                      +...|.++.+.++++-+.+-+..||-.++...                 .    -..+.+.  ..+++  ..+..|..++
T Consensus        18 d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~-----------------~----~~ra~~g--g~~yl--~~~~Ww~G~l   72 (335)
T KOG2922|consen   18 DNIIGLVLAISSSIFIGSSFILKKKGLKRAGA-----------------S----GLRAGEG--GYGYL--KEPLWWAGML   72 (335)
T ss_pred             CceeeeeehhhccEEEeeehhhhHHHHHHHhh-----------------h----cccccCC--Ccchh--hhHHHHHHHH
Confidence            45677777777777766666666665544210                 0    0001110  00112  1344566677


Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhh
Q 018904          281 NHALSGIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLH  342 (349)
Q Consensus       281 ~~a~~g~~~~~~~k~~~~i~~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~  342 (349)
                      ..++|-.+-...+-+++++...+..+++.+++++++..+++|.+++.-.+|.++.+.|..+-
T Consensus        73 tm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~i  134 (335)
T KOG2922|consen   73 TMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTI  134 (335)
T ss_pred             HHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEE
Confidence            77777665555566778888888899999999999999999999999999999988886533

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.82  E-value=11  Score=31.59  Aligned_cols=138  Identities=14%  Similarity=0.169  Sum_probs=69.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccChHHHHHHHHHH
Q 018904          203 LQGWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNH  282 (349)
Q Consensus       203 ~~G~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~  282 (349)
                      .+..+..+++..+..+++..+-++.|..++ +. .-...-...|........+..+..+..  ......+++.|..=.  
T Consensus         4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~s-pl-~As~isf~vGt~~L~~l~l~~~~~~~~--a~~~~~pwW~~~GG~--   77 (150)
T COG3238           4 YLYLLFAILAGALLPLQAAINGRLARYLGS-PL-LASLISFLVGTVLLLILLLIKQGHPGL--AAVASAPWWAWIGGL--   77 (150)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHcCC-hH-HHHHHHHHHHHHHHHHHHHHhcCCCch--hhccCCchHHHHccc--
Confidence            345666777888888888888888777653 33 222222333444333333222221111  111223445554321  


Q ss_pred             HHHHHHHHH---HHHHhhhH-HHHHHHHHHHHHHHHHHHH-HcC---CcchHHHHHHHHHHHHHhhhhcCCCC
Q 018904          283 ALSGIAVSM---VMKYADNI-VKVYSTSVAMLLTAVVSVF-LFG---FHLSLAFFLGSIVVSVSVYLHSAGKL  347 (349)
Q Consensus       283 a~~g~~~~~---~~k~~~~i-~~~~~~~~~~v~t~l~s~~-lfg---e~lt~~~~lG~~lV~~gv~l~~~~~~  347 (349)
                       +|...+.-   .....++. .......-+.+.+.+++.+ ++|   .+++..-++|.++++.|+++....++
T Consensus        78 -lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~~~  149 (150)
T COG3238          78 -LGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRFGA  149 (150)
T ss_pred             -hhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhccccc
Confidence             22222111   11111211 1222222344555566544 233   66999999999999999877766543

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.85  E-value=17  Score=30.38  Aligned_cols=68  Identities=15%  Similarity=0.042  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHHHHHHhcCChHHHHHH-hhhHHHHHHHHHHHHh----cCCCchHHHHHHHHHHhhhhhccc
Q 018904          124 IPAVLYLVKNLLQYYIFAYVDAPGYQIL-KNLNIISTGVLYRIIL----KKKLSEIQWAAFILLCCGCTTAQL  191 (349)
Q Consensus       124 i~~ll~~~~n~l~~~al~~~~~~~~~ll-~~~~pl~talls~~~L----kekls~~qw~gl~l~~~Gv~lv~~  191 (349)
                      +.|++-..+-...-.....+.+++.+.+ ..-+.+.-.++-.+=+    +++++..+++|+++..+|+.+++.
T Consensus        74 ~GG~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~  146 (150)
T COG3238          74 IGGLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARR  146 (150)
T ss_pred             HccchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcc
Confidence            3343333333333345566666655544 4555555555555433    489999999999999999666643

>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function

Probab=86.51  E-value=1.5  Score=34.07  Aligned_cols=42  Identities=21%  Similarity=0.392  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhh
Q 018904          301 KVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLH  342 (349)
Q Consensus       301 ~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~  342 (349)
                      |..-..++..+-+.++++.++|++++.++.|.++++.+++..
T Consensus        65 Ki~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fi  106 (108)
T PF04342_consen   65 KIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFI  106 (108)
T ss_pred             HHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence            333344455556677888999999999999999999998754

>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.38  E-value=17  Score=28.01  Aligned_cols=43  Identities=16%  Similarity=0.260  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhc
Q 018904          301 KVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHS  343 (349)
Q Consensus       301 ~~~~~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~  343 (349)
                      |..-.-++..+-+.+|++.++|++.+.++.|.+++..|+++.-
T Consensus        72 K~mQEVItL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fiF  114 (116)
T COG3169          72 KTMQEVITLAIFVPFSVFYLKEPLRWNYLWAFLLILGAVYFIF  114 (116)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHhc
Confidence            3333444555667889999999999999999999999998654

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=82.46  E-value=10  Score=35.05  Aligned_cols=141  Identities=15%  Similarity=0.201  Sum_probs=80.5

Q ss_pred             hhhhHHHHHHHHHHHHHhHHHHHHH-HhhccCCccchHHHHHHHHHHHHHHHHHHHHHH---HHhhcCCCCCCccccccc
Q 018904           42 ANWKRKSVVTLALTVLTSSQAILIV-WSKRAGKYEYSVTTANFLVETLKCALSLAALAR---IWNHEGVTDDNRLSTTLD  117 (349)
Q Consensus        42 ~~~~~~~~~l~~~~~~~s~~~i~~k-~s~~~~~~~~~~~~~vf~~e~~~~~i~l~~l~~---~~~~~~~~~~~~~~~~~~  117 (349)
                      ..|..+..+++++.+..+-.++.-. ..++.|   -++-+.+|.+-++.+..-+.+.--   .++.-...  ++..-   
T Consensus       160 ~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyG---Kh~~EalFytH~LsLP~Flf~~~div~~~~~~~~s--e~~~~---  231 (330)
T KOG1583|consen  160 FWWLIGIALLVFALLLSAYMGIYQETTYQKYG---KHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKS--ESYLI---  231 (330)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHhccchHHHhcchHHHHHHHHhcC--cceec---
Confidence            3444565666666666665665543 244333   357899999988854332222100   01100000  00000   


Q ss_pred             hhhhhhHHHH-HHHHHHHHH-HHHHh-------cCChHHHHHHhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhh
Q 018904          118 EVIVYPIPAV-LYLVKNLLQ-YYIFA-------YVDAPGYQILKNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTT  188 (349)
Q Consensus       118 ~l~~~~i~~l-l~~~~n~l~-~~al~-------~~~~~~~~ll~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~l  188 (349)
                      ...-..+|.. .|.+.|.+. |.-.+       .+++-+.++...+.=.+..++|...++..+++.+|+|..+.|.|..+
T Consensus       232 p~~g~~vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~  311 (330)
T KOG1583|consen  232 PLLGFKVPSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLL  311 (330)
T ss_pred             cccCccccHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHH
Confidence            0011123333 355555443 32222       24455667777888889999999999999999999999999999987


Q ss_pred             cc
Q 018904          189 AQ  190 (349)
Q Consensus       189 v~  190 (349)
                      ..
T Consensus       312 fa  313 (330)
T KOG1583|consen  312 FA  313 (330)
T ss_pred             HH
Confidence            64

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=80.30  E-value=8.9  Score=35.07  Aligned_cols=127  Identities=22%  Similarity=0.141  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHHHHhchhhhhhccccccChHHHHHHHHHHHH
Q 018904          205 GWIMAIVMALLSGFAGVYTEAIMKKRPSRNINVQNFWLYVFGMAFNAVAIVIQDFDAVMNKGFFHGYSFITVLMILNHAL  284 (349)
Q Consensus       205 G~ll~l~a~~~~al~~v~~e~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~a~  284 (349)
                      |++..++|+++.+...|=.||.-.. |  ++..|- .+.....+...+..+..+..         .+.++..+.=..-+.
T Consensus         1 G~~a~~va~~~fGs~~vPvK~~~~g-D--g~~fQw-~~~~~i~~~g~~v~~~~~~p---------~f~p~amlgG~lW~~   67 (254)
T PF07857_consen    1 GYIACIVAVLFFGSNFVPVKKFDTG-D--GFFFQW-VMCSGIFLVGLVVNLILGFP---------PFYPWAMLGGALWAT   67 (254)
T ss_pred             CchhHHHHHHHhcccceeeEeccCC-C--cHHHHH-HHHHHHHHHHHHHHHhcCCC---------cceeHHHhhhhhhhc
Confidence            5566778888877766666644222 1  444332 22222222222222221110         122222222222233


Q ss_pred             HHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHH-HcCCcc-----hHHHHHHHHHHHHHhhhhcC
Q 018904          285 SGIAVSMVMKYAD-NIVKVYSTSVAMLLTAVVSVF-LFGFHL-----SLAFFLGSIVVSVSVYLHSA  344 (349)
Q Consensus       285 ~g~~~~~~~k~~~-~i~~~~~~~~~~v~t~l~s~~-lfge~l-----t~~~~lG~~lV~~gv~l~~~  344 (349)
                      ++.+.-.++|..+ ++-...-..+..+.....|-+ +||++.     .+...+|.++++.|..+|..
T Consensus        68 gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~f  134 (254)
T PF07857_consen   68 GNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSF  134 (254)
T ss_pred             CceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheee
Confidence            4444444444432 122223334444555555533 566543     34568999999999887764

The region concerned is approximately 280 residues long.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	349
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.6
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.42
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.13
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.11

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.60  E-value=2.7e-07  Score=72.35  Aligned_cols=70  Identities=16%  Similarity=0.188  Sum_probs=63.1

Q ss_pred             hHHHHHHHHHHHHHHHHHhcCChHHHHHH-hhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhcccc
Q 018904          123 PIPAVLYLVKNLLQYYIFAYVDAPGYQIL-KNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  192 (349)
Q Consensus       123 ~i~~ll~~~~n~l~~~al~~~~~~~~~ll-~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~  192 (349)
                      ....+++.++..+...+++++|.+.+..+ ..+.|+++++++++++||++++.||+|+.+.++|+..+...
T Consensus        34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~  104 (110)
T 3b5d_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            34445688899999999999999998887 89999999999999999999999999999999999998654

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.42  E-value=3e-07  Score=74.81  Aligned_cols=69  Identities=16%  Similarity=0.199  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHHHHHHhcCChHHHHHH-hhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhhhhcccc
Q 018904          124 IPAVLYLVKNLLQYYIFAYVDAPGYQIL-KNLNIISTGVLYRIILKKKLSEIQWAAFILLCCGCTTAQLN  192 (349)
Q Consensus       124 i~~ll~~~~n~l~~~al~~~~~~~~~ll-~~~~pl~talls~~~Lkekls~~qw~gl~l~~~Gv~lv~~~  192 (349)
                      +..+++.++..+++.+++++|++.+..+ .++.|+++++++++++||++++.||+|+++.++|+.++...
T Consensus        35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~  104 (137)
T 2i68_A           35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (137)
T ss_dssp             HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            3345688899999999999999988777 89999999999999999999999999999999999998654

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.13  E-value=1.7e-05  Score=61.98  Aligned_cols=66  Identities=17%  Similarity=0.217  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcCCC
Q 018904          281 NHALSGIAVSMVMKYADNIVKVYS-TSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAGK  346 (349)
Q Consensus       281 ~~a~~g~~~~~~~k~~~~i~~~~~-~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~~~  346 (349)
                      ..++...+..+.+|+.+....... ..+++++++++|+++|||++|..+++|.++|+.|+.+.+..+
T Consensus        39 ~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~  105 (110)
T 3b5d_A           39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            334444566778888776665555 688999999999999999999999999999999999877654

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.11  E-value=3.2e-06  Score=68.70  Aligned_cols=67  Identities=18%  Similarity=0.247  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhhhcCC
Q 018904          279 ILNHALSGIAVSMVMKYADNIVKVYS-TSVAMLLTAVVSVFLFGFHLSLAFFLGSIVVSVSVYLHSAG  345 (349)
Q Consensus       279 i~~~a~~g~~~~~~~k~~~~i~~~~~-~~~~~v~t~l~s~~lfge~lt~~~~lG~~lV~~gv~l~~~~  345 (349)
                      ++..++...+..+.+|+.+....... +.+.|++++++|+++|||++|+.+++|.++|+.|+++.+..
T Consensus        37 i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~  104 (137)
T 2i68_A           37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (137)
T ss_dssp             HHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            34445555667778888777666555 78999999999999999999999999999999999987653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00