Citrus Sinensis ID: 018939

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35
MDSCCAAALKANAHPAVSNRNTGFWGGSVKGSLKSWDLNFGSRVWKNLRTEKINKNVTKPGVAYSILTSDTNKETVTFQAPMFETPQADPKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQVR
ccHHHHHHHHcccccccccccccccccccccccccccccccccHHHcHHHHHcccccccccEEEEEEcccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccEEEEEEEEccccccccccEEEEEEcccHHHHHHHHHHHcccccccccccccEEEEccccccccccccccccHHHHHHHHHHHHHccccccccEEEEEcccccccccHHHHHHHHHHccccEEEEEEEccccccccccEEEEcccccEEEEEcccccccccccccccccccccccccccccEEEEcccEEEcHHHHHHHHHccccccccccccHHHHcccccccEEc
ccccEEEccccccccccccccccccccEEEcccccccccccHHHHHHHHHcccccccccccEEEEEEEcccccccccccccccccccccHHcEEEEEEEccccccccHHHHHccccccccccEEEEEEccccccccccccEEEEEEccccHHHHHHHHHHHcccccccccccEEEEEccccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEEccccEEHccHHHHHHHHHHccccEEEEEEEccHHHHHHccEEEEccccEEEEEEEccccccccccccccEEccccHHHHHHcccEEEEEEEEEcHHHHHHHHHHccccccccHHHHHHHHHHHccEEEc
MDSCCAAALkanahpavsnrntgfwggsvkgSLKSWDLNFGSRVWKNLRtekinknvtkpgvAYSILTsdtnketvtfqapmfetpqadpknVAAIIlgggagtrlfpltnrrakpavpiggnyrlidipmsncinsgfNKIFIMTQFNSFSLNRHLARsynlgngvnfgDGFVEVLAAtqtpgeagkkWFQGTADAVRQFIWVFEdaknknvenvLILSGDHLYRMDYTEFLQKHidtkaditvscvpmddcrasdyglmkidrsgqiiqfaekpkgpdlkgmqcdttllglsmpdavkfpyiaSMGVYLFRTDVLLNLLRssyplsndfgseiipasvkdhnvqvr
MDSCCAAALkanahpavsnrntgfWGGSVKGSLKSWDLNFGSRVWKnlrtekinknvtkpgvaysiLTSDTNKETVTFQAPmfetpqadpkNVAAIILGGGagtrlfpltnrraKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFedaknknvenVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFaekpkgpdlkgMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLsndfgseiipasvkdhnvqvr
MDSCCAAALKANAHPAVSNRNTGFWGGSVKGSLKSWDLNFGSRVWKNLRTEKINKNVTKPGVAYSILTSDTNKETVTFQAPMFETPQADPKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQVR
********L*****PAVSNRNTGFWGGSVKGSLKSWDLNFGSRVWKNLRTEKINKNVTKPGVAYSILTSDTNKETVTFQAPMFE*****PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEK****DLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEII************
********************************************************************************************VAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGP***********LGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNV*V*
MDSCCAAALKANAHPAVSNRNTGFWGGSVKGSLKSWDLNFGSRVWKNLRTEKINKNVTKPGVAYSILTSDTNKETVTFQAPMFETPQADPKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQVR
***CCAAALKANAHPAVSNRNTGFWGGS*K****SW*L*F*************NKNVTKPGVAYSILTSDTNKETVTFQAPMFETPQADPKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQVR
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDSCCAAALKANAHPAVSNRNTGFWGGSVKGSLKSWDLNFGSRVWKNLRTEKINKNVTKPGVAYSILTSDTNKETVTFQAPMFETPQADPKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQVR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query348 2.2.26 [Sep-21-2011]
P55233 522 Glucose-1-phosphate adeny N/A no 0.974 0.649 0.693 1e-138
P55242 519 Glucose-1-phosphate adeny N/A no 0.971 0.651 0.671 1e-133
P55230 518 Glucose-1-phosphate adeny yes no 0.939 0.631 0.662 1e-129
P55231 521 Glucose-1-phosphate adeny no no 0.968 0.646 0.64 1e-129
Q00081 470 Glucose-1-phosphate adeny N/A no 0.833 0.617 0.718 1e-125
Q9SIK1 523 Probable glucose-1-phosph no no 0.968 0.644 0.593 1e-115
P55229 522 Glucose-1-phosphate adeny no no 0.752 0.501 0.711 1e-113
P55243 483 Glucose-1-phosphate adeny N/A no 0.839 0.604 0.641 1e-109
P12299 522 Glucose-1-phosphate adeny N/A no 0.810 0.540 0.638 1e-104
P30524 523 Glucose-1-phosphate adeny N/A no 0.856 0.569 0.600 1e-104
>sp|P55233|GLGL1_BETVU Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic OS=Beta vulgaris GN=AGPS1 PE=2 SV=1 Back     alignment and function desciption
 Score =  491 bits (1263), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 242/349 (69%), Positives = 282/349 (80%), Gaps = 10/349 (2%)

Query: 1   MDSCCAAALKANAHPAVSNRNTGFWGGSVKGSLKSWDLNFGSRVWKNLRTEKINKNVTKP 60
           MD+  AAA+  NAH     +   F G  +  SLK  DL    R   + RTE   +NV KP
Sbjct: 1   MDAS-AAAINVNAHLTEVGKKR-FLGERISQSLKGKDL----RALFS-RTESKGRNVNKP 53

Query: 61  GVAYSILTSDTN---KETVTFQAPMFETPQADPKNVAAIILGGGAGTRLFPLTNRRAKPA 117
           GVA+S+LTSD N   KE++ ++  +FE+P+ADPKNVAAI+LGGGAGTRLFPLT+RRAKPA
Sbjct: 54  GVAFSVLTSDFNQSVKESLKYEPALFESPKADPKNVAAIVLGGGAGTRLFPLTSRRAKPA 113

Query: 118 VPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVL 177
           VPIGG YRLID+PMSNCINSG  KIFI+TQFNSFSLNRHLAR+YN G+GVNFGDGFVEV 
Sbjct: 114 VPIGGCYRLIDVPMSNCINSGIRKIFILTQFNSFSLNRHLARTYNFGDGVNFGDGFVEVF 173

Query: 178 AATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHI 237
           AATQTPGE+GKKWFQGTADAVRQF W FED+K+K+VE+++ILSGDHLYRMDY  F QKHI
Sbjct: 174 AATQTPGESGKKWFQGTADAVRQFFWAFEDSKSKDVEHIVILSGDHLYRMDYMSFWQKHI 233

Query: 238 DTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPD 297
           DT ADITVSC+PMDD RASDYGLMKID +G+I+ FAEKPKG DL  MQ DTT+LGLS  +
Sbjct: 234 DTNADITVSCIPMDDSRASDYGLMKIDHTGRIVHFAEKPKGSDLTAMQVDTTVLGLSDLE 293

Query: 298 AVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQ 346
           A+  PYIASMGVY+FRTDVL+ LL   YP SNDFGSEIIP++V + NVQ
Sbjct: 294 AMSNPYIASMGVYVFRTDVLMELLNRKYPSSNDFGSEIIPSAVGESNVQ 342
This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP.
Beta vulgaris (taxid: 161934)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 2EC: 7
>sp|P55242|GLGL2_SOLTU Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic/amyloplastic OS=Solanum tuberosum GN=AGPS2 PE=2 SV=1 Back     alignment and function description
>sp|P55230|GLGL2_ARATH Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic OS=Arabidopsis thaliana GN=APL2 PE=2 SV=2 Back     alignment and function description
>sp|P55231|GLGL3_ARATH Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic OS=Arabidopsis thaliana GN=APL3 PE=2 SV=2 Back     alignment and function description
>sp|Q00081|GLGL1_SOLTU Glucose-1-phosphate adenylyltransferase large subunit 1 (Fragment) OS=Solanum tuberosum GN=AGPS1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIK1|GLGL4_ARATH Probable glucose-1-phosphate adenylyltransferase large subunit, chloroplastic OS=Arabidopsis thaliana GN=At2g21590 PE=2 SV=1 Back     alignment and function description
>sp|P55229|GLGL1_ARATH Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic OS=Arabidopsis thaliana GN=ADG2 PE=1 SV=3 Back     alignment and function description
>sp|P55243|GLGL3_SOLTU Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic/amyloplastic OS=Solanum tuberosum GN=AGPS3 PE=2 SV=1 Back     alignment and function description
>sp|P12299|GLGL2_WHEAT Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic OS=Triticum aestivum GN=AGP-L PE=2 SV=2 Back     alignment and function description
>sp|P30524|GLGL1_HORVU Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic/amyloplastic OS=Hordeum vulgare PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query348
224062107 528 predicted protein [Populus trichocarpa] 0.974 0.642 0.754 1e-152
255538708 523 glucose-1-phosphate adenylyltransferase, 0.982 0.653 0.760 1e-148
224085694 475 predicted protein [Populus trichocarpa] 0.827 0.606 0.843 1e-144
225458219 524 PREDICTED: glucose-1-phosphate adenylylt 0.971 0.645 0.710 1e-142
356509672 530 PREDICTED: glucose-1-phosphate adenylylt 0.985 0.647 0.696 1e-139
390132086 518 ADP-glucose pyrophosphorylase large subu 0.954 0.640 0.707 1e-138
449460245 532 PREDICTED: glucose-1-phosphate adenylylt 0.991 0.648 0.694 1e-138
126363763 518 ADP-glucose pyrophosphorylase beta subun 0.954 0.640 0.704 1e-138
449476838 532 PREDICTED: LOW QUALITY PROTEIN: glucose- 0.991 0.648 0.691 1e-137
225428422 527 PREDICTED: glucose-1-phosphate adenylylt 0.979 0.647 0.696 1e-136
>gi|224062107|ref|XP_002300758.1| predicted protein [Populus trichocarpa] gi|222842484|gb|EEE80031.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  542 bits (1397), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 268/355 (75%), Positives = 302/355 (85%), Gaps = 16/355 (4%)

Query: 1   MDSCCAAALKANAHPAVS-------NRNTGFWGGSVKGSLKSWDLNFGSRVWKNLRT--E 51
           MDS C A + +    AV+       N  T FWG ++K +LKSWD    +++ KNLR+  +
Sbjct: 1   MDSFCGALMASAGANAVNFNKGGIGNDGTIFWGENLKKNLKSWDSR--AQLRKNLRSGVK 58

Query: 52  KINKNVTKPGVAYSILTSDTNKETVTFQAPMFETPQADPKNVAAIILGGGAGTRLFPLTN 111
           KI     KPGVAYS+LTSD N+ETV F+AP+FETPQADP NVA+IILGGGAGTRLFPLT+
Sbjct: 59  KI-----KPGVAYSLLTSDVNEETVIFEAPVFETPQADPSNVASIILGGGAGTRLFPLTS 113

Query: 112 RRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGD 171
           RRAKPAVPIGG YRLIDIPMSNCINSG  KIFI+TQFNSFSLNRHLAR+YN GNGV+FGD
Sbjct: 114 RRAKPAVPIGGCYRLIDIPMSNCINSGIKKIFILTQFNSFSLNRHLARTYNFGNGVSFGD 173

Query: 172 GFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTE 231
           GFVEVLAATQTPGEAGKKWFQGTADAVRQFIW+FEDA+ KNVE+VLILSGDHLYRM+Y E
Sbjct: 174 GFVEVLAATQTPGEAGKKWFQGTADAVRQFIWMFEDARTKNVEHVLILSGDHLYRMNYME 233

Query: 232 FLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLL 291
           F+QKHIDT ADITVSCVPMDD RASDYGLMKID +G+IIQFAEKPKG DLK MQ DTTLL
Sbjct: 234 FVQKHIDTNADITVSCVPMDDSRASDYGLMKIDSTGRIIQFAEKPKGTDLKAMQVDTTLL 293

Query: 292 GLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQ 346
           GLS  +A++FPYIASMGVY+FRTDVLL LLR SYP  NDFGSEIIP++VK+HNVQ
Sbjct: 294 GLSKQEAMQFPYIASMGVYVFRTDVLLKLLRCSYPSCNDFGSEIIPSAVKEHNVQ 348

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255538708|ref|XP_002510419.1| glucose-1-phosphate adenylyltransferase, putative [Ricinus communis] gi|223551120|gb|EEF52606.1| glucose-1-phosphate adenylyltransferase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224085694|ref|XP_002307668.1| predicted protein [Populus trichocarpa] gi|222857117|gb|EEE94664.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225458219|ref|XP_002281223.1| PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic/amyloplastic [Vitis vinifera] gi|302142527|emb|CBI19730.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356509672|ref|XP_003523570.1| PREDICTED: glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|390132086|gb|AFL55398.1| ADP-glucose pyrophosphorylase large subunit 3 [Ipomoea batatas] Back     alignment and taxonomy information
>gi|449460245|ref|XP_004147856.1| PREDICTED: glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|126363763|dbj|BAF47748.1| ADP-glucose pyrophosphorylase beta subunit IbAGPb2 [Ipomoea batatas] Back     alignment and taxonomy information
>gi|449476838|ref|XP_004154849.1| PREDICTED: LOW QUALITY PROTEIN: glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225428422|ref|XP_002283855.1| PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query348
TAIR|locus:2136358 521 APL3 [Arabidopsis thaliana (ta 0.968 0.646 0.645 7.9e-117
TAIR|locus:2199241 518 APL2 "ADPGLC-PPase large subun 0.954 0.640 0.664 1.3e-116
TAIR|locus:2049364 523 APL4 [Arabidopsis thaliana (ta 0.974 0.648 0.62 9.7e-112
TAIR|locus:2182132 522 APL1 "ADP glucose pyrophosphor 0.75 0.5 0.713 6.9e-102
TAIR|locus:2156263 520 ADG1 "ADP glucose pyrophosphor 0.706 0.473 0.609 2.6e-79
UNIPROTKB|P15280 514 AGPS "Glucose-1-phosphate aden 0.706 0.478 0.601 1.4e-78
TAIR|locus:2032003 476 APS2 "AT1G05610" [Arabidopsis 0.683 0.5 0.413 3.9e-44
UNIPROTKB|Q9KLP4 407 glgC2 "Glucose-1-phosphate ade 0.520 0.444 0.423 1.1e-37
TIGR_CMR|VC_A0699 407 VC_A0699 "glucose-1-phosphate 0.520 0.444 0.423 1.1e-37
UNIPROTKB|P0A6V1 431 glgC "GlgC" [Escherichia coli 0.525 0.424 0.431 6.3e-37
TAIR|locus:2136358 APL3 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1151 (410.2 bits), Expect = 7.9e-117, P = 7.9e-117
 Identities = 226/350 (64%), Positives = 269/350 (76%)

Query:     1 MDSCCAAALKAN---AHPAVSNRNTGFWGGSVKGS-LKSWDLNFGSRVWKNLRTEKINKN 56
             MDSCC  +L      A  +  N    F G  +KGS LK +  +  S   K  R  K+   
Sbjct:     1 MDSCCNFSLGTKTVLAKDSFKNVENKFLGEKIKGSVLKPFSSDLSS---KKFRNRKL--- 54

Query:    57 VTKPGVAYSILTSDTNKETVTFQAPMFETPQADPKNVAAIILGGGAGTRLFPLTNRRAKP 116
               +PGVAY+I TS   KE +  Q  MFE  +ADPKNVAAIILGGG G +LFPLT R A P
Sbjct:    55 --RPGVAYAIATSKNAKEALKNQPSMFERRRADPKNVAAIILGGGDGAKLFPLTKRAATP 112

Query:   117 AVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEV 176
             AVP+GG YR+IDIPMSNCINS  NKIF++TQFNS SLNRHLAR+Y  GNG+NFGDGFVEV
Sbjct:   113 AVPVGGCYRMIDIPMSNCINSCINKIFVLTQFNSASLNRHLARTY-FGNGINFGDGFVEV 171

Query:   177 LAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKH 236
             LAATQTPGEAGKKWFQGTADAVR+F+WVFEDAKN+N+EN++ILSGDHLYRM+Y +F+Q H
Sbjct:   172 LAATQTPGEAGKKWFQGTADAVRKFLWVFEDAKNRNIENIIILSGDHLYRMNYMDFVQHH 231

Query:   237 IDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMP 296
             +D+KADIT+SC P+D+ RAS+YGL+ IDRSG+++ F+EKP G DLK MQ DTT+ GLS  
Sbjct:   232 VDSKADITLSCAPVDESRASEYGLVNIDRSGRVVHFSEKPTGIDLKSMQTDTTMHGLSHQ 291

Query:   297 DAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQ 346
             +A K PYIASMGVY F+T+ LL LL   YP SNDFGSEIIPA++KDHNVQ
Sbjct:   292 EAAKSPYIASMGVYCFKTEALLKLLTWRYPSSNDFGSEIIPAAIKDHNVQ 341
GO:0008878 "glucose-1-phosphate adenylyltransferase activity" evidence=IEA;ISS
GO:0009058 "biosynthetic process" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM
GO:0016779 "nucleotidyltransferase activity" evidence=IEA
GO:0009853 "photorespiration" evidence=RCA
GO:0019252 "starch biosynthetic process" evidence=RCA;TAS
TAIR|locus:2199241 APL2 "ADPGLC-PPase large subunit" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2049364 APL4 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2182132 APL1 "ADP glucose pyrophosphorylase large subunit 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156263 ADG1 "ADP glucose pyrophosphorylase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P15280 AGPS "Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2032003 APS2 "AT1G05610" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KLP4 glgC2 "Glucose-1-phosphate adenylyltransferase 2" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_A0699 VC_A0699 "glucose-1-phosphate adenylyltransferase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
UNIPROTKB|P0A6V1 glgC "GlgC" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q00081GLGL1_SOLTU2, ., 7, ., 7, ., 2, 70.71820.83330.6170N/Ano
P55230GLGL2_ARATH2, ., 7, ., 7, ., 2, 70.66280.93960.6312yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.70.921
4th Layer2.7.7.270.914

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_II0158
glucose-1-phosphate adenylyltransferase (EC-2.7.7.27); This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP- glucose from Glc-1-P and ATP (By similarity) (528 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.XV.361.1
hypothetical protein (586 aa)
• •  •• 0.960
gw1.164.92.1
hypothetical protein (387 aa)
• •  •• 0.952
gw1.XVII.1126.1
hypothetical protein (688 aa)
• •  •• 0.945
estExt_fgenesh4_pg.C_LG_IX1158
hypothetical protein; Phosphorylase is an important allosteric enzyme in carbohydrate metabolis [...] (853 aa)
• •  •• 0.934
estExt_Genewise1_v1.C_LG_IV2986
hypothetical protein; Phosphorylase is an important allosteric enzyme in carbohydrate metabolis [...] (819 aa)
• •  •• 0.932
estExt_Genewise1_v1.C_LG_IV0101
hypothetical protein; Phosphorylase is an important allosteric enzyme in carbohydrate metabolis [...] (950 aa)
• •  •• 0.928
estExt_fgenesh4_pg.C_LG_XV1054
phosphoglucomutase (EC-5.4.2.2) (551 aa)
     •• 0.906
eugene3.00121193
phosphoglucomutase (EC-5.4.2.2) (631 aa)
     •• 0.905
estExt_fgenesh4_pm.C_LG_VIII0571
phosphoglucomutase (EC-5.4.2.2) (582 aa)
     •• 0.905
estExt_fgenesh4_pg.C_LG_X0989
phosphoglucomutase (EC-5.4.2.2) (582 aa)
     •• 0.905

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query348
PLN02241 436 PLN02241, PLN02241, glucose-1-phosphate adenylyltr 0.0
PRK02862 429 PRK02862, glgC, glucose-1-phosphate adenylyltransf 1e-146
TIGR02091 361 TIGR02091, glgC, glucose-1-phosphate adenylyltrans 1e-115
COG0448 393 COG0448, GlgC, ADP-glucose pyrophosphorylase [Carb 2e-96
pfam00483247 pfam00483, NTP_transferase, Nucleotidyl transferas 1e-86
PRK00725 425 PRK00725, glgC, glucose-1-phosphate adenylyltransf 7e-84
PRK00844 407 PRK00844, glgC, glucose-1-phosphate adenylyltransf 4e-75
cd02508200 cd02508, ADP_Glucose_PP, ADP-glucose pyrophosphory 3e-74
PRK05293 380 PRK05293, glgC, glucose-1-phosphate adenylyltransf 9e-68
cd04181217 cd04181, NTP_transferase, NTP_transferases catalyz 1e-33
COG1208 358 COG1208, GCD1, Nucleoside-diphosphate-sugar pyroph 2e-26
cd06915223 cd06915, NTP_transferase_WcbM_like, WcbM_like is a 6e-21
COG1209286 COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cel 3e-16
cd04189236 cd04189, G1P_TT_long, G1P_TT_long represents the l 3e-14
cd06426220 cd06426, NTP_transferase_like_2, NTP_trnasferase_l 6e-14
TIGR02092 369 TIGR02092, glgD, glucose-1-phosphate adenylyltrans 3e-13
TIGR03992 393 TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diph 3e-13
cd02538240 cd02538, G1P_TT_short, G1P_TT_short is the short f 2e-12
cd04198214 cd04198, eIF-2B_gamma_N, The N-terminal domain of 3e-10
cd02507216 cd02507, eIF-2B_gamma_N_like, The N-terminal of eI 3e-08
TIGR01207286 TIGR01207, rmlA, glucose-1-phosphate thymidylyltra 1e-07
cd02523229 cd02523, PC_cytidylyltransferase, Phosphocholine c 7e-07
TIGR01208 353 TIGR01208, rmlA_long, glucose-1-phosphate thymidyl 7e-07
PRK15480292 PRK15480, PRK15480, glucose-1-phosphate thymidylyl 9e-07
cd06422221 cd06422, NTP_transferase_like_1, NTP_transferase_l 1e-06
cd02540229 cd02540, GT2_GlmU_N_bac, N-terminal domain of bact 5e-05
cd06425233 cd06425, M1P_guanylylT_B_like_N, N-terminal domain 2e-04
cd02524253 cd02524, G1P_cytidylyltransferase, G1P_cytidylyltr 0.003
TIGR02623254 TIGR02623, G1P_cyt_trans, glucose-1-phosphate cyti 0.003
>gnl|CDD|215133 PLN02241, PLN02241, glucose-1-phosphate adenylyltransferase Back     alignment and domain information 
 Score =  525 bits (1354), Expect = 0.0
 Identities = 195/258 (75%), Positives = 230/258 (89%), Gaps = 3/258 (1%)

Query: 90  PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFN 149
           PK+VAAIILGGGAGTRLFPLT RRAKPAVPIGGNYRLIDIPMSNCINSG NKI+++TQFN
Sbjct: 1   PKSVAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFN 60

Query: 150 SFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAK 209
           S SLNRHL+R+YN GNG NFGDGFVEVLAATQTPGE G  WFQGTADAVRQF+W+FEDAK
Sbjct: 61  SASLNRHLSRAYNFGNGGNFGDGFVEVLAATQTPGEKG--WFQGTADAVRQFLWLFEDAK 118

Query: 210 NKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQI 269
           NKNVE VLILSGDHLYRMDY +F+QKH ++ ADIT++C+P+D+ RASD+GLMKID +G+I
Sbjct: 119 NKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLPVDESRASDFGLMKIDDTGRI 178

Query: 270 IQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSN 329
           I+F+EKPKG +LK MQ DTT+LGLS  +A + PYIASMG+Y+F+ DVLL LLR  +P +N
Sbjct: 179 IEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTAN 238

Query: 330 DFGSEIIPASVKD-HNVQ 346
           DFGSEIIP ++K+ +NVQ
Sbjct: 239 DFGSEIIPGAIKEGYNVQ 256

Length = 436
>gnl|CDD|179486 PRK02862, glgC, glucose-1-phosphate adenylyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|233720 TIGR02091, glgC, glucose-1-phosphate adenylyltransferase Back     alignment and domain information
>gnl|CDD|223525 COG0448, GlgC, ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|215940 pfam00483, NTP_transferase, Nucleotidyl transferase Back     alignment and domain information
>gnl|CDD|234824 PRK00725, glgC, glucose-1-phosphate adenylyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|234846 PRK00844, glgC, glucose-1-phosphate adenylyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|133002 cd02508, ADP_Glucose_PP, ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch Back     alignment and domain information
>gnl|CDD|179997 PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|133024 cd04181, NTP_transferase, NTP_transferases catalyze the transfer of nucleotides onto phosphosugars Back     alignment and domain information
>gnl|CDD|224129 COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|133065 cd06915, NTP_transferase_WcbM_like, WcbM_like is a subfamily of nucleotidyl transferases Back     alignment and domain information
>gnl|CDD|224130 COG1209, RfbA, dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|133032 cd04189, G1P_TT_long, G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase Back     alignment and domain information
>gnl|CDD|133048 cd06426, NTP_transferase_like_2, NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family Back     alignment and domain information
>gnl|CDD|233721 TIGR02092, glgD, glucose-1-phosphate adenylyltransferase, GlgD subunit Back     alignment and domain information
>gnl|CDD|234433 TIGR03992, Arch_glmU, UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase Back     alignment and domain information
>gnl|CDD|133019 cd02538, G1P_TT_short, G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase Back     alignment and domain information
>gnl|CDD|133041 cd04198, eIF-2B_gamma_N, The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2 Back     alignment and domain information
>gnl|CDD|133001 cd02507, eIF-2B_gamma_N_like, The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity Back     alignment and domain information
>gnl|CDD|130274 TIGR01207, rmlA, glucose-1-phosphate thymidylyltransferase, short form Back     alignment and domain information
>gnl|CDD|133014 cd02523, PC_cytidylyltransferase, Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline Back     alignment and domain information
>gnl|CDD|233311 TIGR01208, rmlA_long, glucose-1-phosphate thymidylylransferase, long form Back     alignment and domain information
>gnl|CDD|185377 PRK15480, PRK15480, glucose-1-phosphate thymidylyltransferase RfbA; Provisional Back     alignment and domain information
>gnl|CDD|133044 cd06422, NTP_transferase_like_1, NTP_transferase_like_1 is a member of the nucleotidyl transferase family Back     alignment and domain information
>gnl|CDD|133020 cd02540, GT2_GlmU_N_bac, N-terminal domain of bacterial GlmU Back     alignment and domain information
>gnl|CDD|133047 cd06425, M1P_guanylylT_B_like_N, N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins Back     alignment and domain information
>gnl|CDD|133015 cd02524, G1P_cytidylyltransferase, G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose Back     alignment and domain information
>gnl|CDD|131672 TIGR02623, G1P_cyt_trans, glucose-1-phosphate cytidylyltransferase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 348
KOG1322 371 consensus GDP-mannose pyrophosphorylase/mannose-1- 100.0
COG0448 393 GlgC ADP-glucose pyrophosphorylase [Carbohydrate t 100.0
PLN02241 436 glucose-1-phosphate adenylyltransferase 100.0
PRK02862 429 glgC glucose-1-phosphate adenylyltransferase; Prov 100.0
PRK00844 407 glgC glucose-1-phosphate adenylyltransferase; Prov 100.0
PRK05293 380 glgC glucose-1-phosphate adenylyltransferase; Prov 100.0
PRK00725 425 glgC glucose-1-phosphate adenylyltransferase; Prov 100.0
PF00483248 NTP_transferase: Nucleotidyl transferase This Pros 100.0
PRK10122297 GalU regulator GalF; Provisional 100.0
cd06428257 M1P_guanylylT_A_like_N N-terminal domain of M1P_gu 100.0
TIGR01105297 galF UTP-glucose-1-phosphate uridylyltransferase, 100.0
cd06425233 M1P_guanylylT_B_like_N N-terminal domain of the M1 100.0
COG1208 358 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas 100.0
PRK15480292 glucose-1-phosphate thymidylyltransferase RfbA; Pr 100.0
TIGR02091 361 glgC glucose-1-phosphate adenylyltransferase. This 100.0
COG1209286 RfbA dTDP-glucose pyrophosphorylase [Cell envelope 100.0
TIGR01099260 galU UTP-glucose-1-phosphate uridylyltransferase. 100.0
cd04181217 NTP_transferase NTP_transferases catalyze the tran 100.0
cd02538240 G1P_TT_short G1P_TT_short is the short form of glu 99.98
TIGR02623254 G1P_cyt_trans glucose-1-phosphate cytidylyltransfe 99.98
TIGR02092 369 glgD glucose-1-phosphate adenylyltransferase, GlgD 99.98
TIGR01207286 rmlA glucose-1-phosphate thymidylyltransferase, sh 99.98
cd02541267 UGPase_prokaryotic Prokaryotic UGPase catalyses th 99.98
cd06422221 NTP_transferase_like_1 NTP_transferase_like_1 is a 99.97
cd04197217 eIF-2B_epsilon_N The N-terminal domain of epsilon 99.97
cd02524253 G1P_cytidylyltransferase G1P_cytidylyltransferase 99.97
PRK13389302 UTP--glucose-1-phosphate uridylyltransferase subun 99.97
cd06915223 NTP_transferase_WcbM_like WcbM_like is a subfamily 99.97
cd04189236 G1P_TT_long G1P_TT_long represents the long form o 99.97
TIGR01208 353 rmlA_long glucose-1-phosphate thymidylylransferase 99.97
COG1210291 GalU UDP-glucose pyrophosphorylase [Cell envelope 99.96
cd06426220 NTP_transferase_like_2 NTP_trnasferase_like_2 is a 99.96
cd02508200 ADP_Glucose_PP ADP-glucose pyrophosphorylase is in 99.96
cd02509274 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransf 99.95
cd04183231 GT2_BcE_like GT2_BcbE_like is likely involved in t 99.95
KOG1460 407 consensus GDP-mannose pyrophosphorylase [Carbohydr 99.95
cd02523229 PC_cytidylyltransferase Phosphocholine cytidylyltr 99.94
cd02507216 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma 99.94
PRK14358 481 glmU bifunctional N-acetylglucosamine-1-phosphate 99.94
cd02540229 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU 99.93
PRK14355 459 glmU bifunctional N-acetylglucosamine-1-phosphate 99.93
PRK14352 482 glmU bifunctional N-acetylglucosamine-1-phosphate 99.93
cd04198214 eIF-2B_gamma_N The N-terminal domain of gamma subu 99.93
PRK09451 456 glmU bifunctional N-acetylglucosamine-1-phosphate 99.93
COG1207 460 GlmU N-acetylglucosamine-1-phosphate uridyltransfe 99.92
TIGR01479 468 GMP_PMI mannose-1-phosphate guanylyltransferase/ma 99.91
PRK14360 450 glmU bifunctional N-acetylglucosamine-1-phosphate 99.91
TIGR01173 451 glmU UDP-N-acetylglucosamine diphosphorylase/gluco 99.91
PRK14354 458 glmU bifunctional N-acetylglucosamine-1-phosphate 99.9
PRK14357 448 glmU bifunctional N-acetylglucosamine-1-phosphate 99.9
PRK14356 456 glmU bifunctional N-acetylglucosamine-1-phosphate 99.9
PRK14359 430 glmU bifunctional N-acetylglucosamine-1-phosphate 99.89
PRK14353 446 glmU bifunctional N-acetylglucosamine-1-phosphate 99.88
KOG1462 433 consensus Translation initiation factor 2B, gamma 99.88
PRK15460 478 cpsB mannose-1-phosphate guanyltransferase; Provis 99.85
PRK05450245 3-deoxy-manno-octulosonate cytidylyltransferase; P 99.84
cd02517239 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes th 99.83
COG0836333 {ManC} Mannose-1-phosphate guanylyltransferase [Ce 99.82
COG1213239 Predicted sugar nucleotidyltransferases [Cell enve 99.77
PRK13368238 3-deoxy-manno-octulosonate cytidylyltransferase; P 99.76
COG4750231 LicC CTP:phosphocholine cytidylyltransferase invol 99.73
PLN02917293 CMP-KDO synthetase 99.7
KOG1461 673 consensus Translation initiation factor 2B, epsilo 99.65
PF12804160 NTP_transf_3: MobA-like NTP transferase domain; PD 99.63
TIGR00454183 conserved hypothetical protein TIGR00454. At this 99.6
cd04182186 GT_2_like_f GT_2_like_f is a subfamily of the glyc 99.55
cd02516218 CDP-ME_synthetase CDP-ME synthetase is involved in 99.51
TIGR00466238 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransfe 99.51
cd02513223 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N- 99.5
TIGR00453217 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl 99.49
TIGR03310188 matur_ygfJ molybdenum hydroxylase accessory protei 99.49
PRK00155227 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl 99.49
PRK13385230 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans 99.44
cd02503181 MobA MobA catalyzes the formation of molybdopterin 99.42
PRK09382 378 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosp 99.39
cd04193323 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catala 99.38
COG2266177 GTP:adenosylcobinamide-phosphate guanylyltransfera 99.36
PRK00317193 mobA molybdopterin-guanine dinucleotide biosynthes 99.36
TIGR03202190 pucB xanthine dehydrogenase accessory protein pucB 99.34
TIGR02665186 molyb_mobA molybdopterin-guanine dinucleotide bios 99.31
cd04180266 UGPase_euk_like Eukaryotic UGPase-like includes UD 99.31
PLN02728252 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans 99.28
PRK02726200 molybdopterin-guanine dinucleotide biosynthesis pr 99.24
PRK14489 366 putative bifunctional molybdopterin-guanine dinucl 99.2
PTZ00339 482 UDP-N-acetylglucosamine pyrophosphorylase; Provisi 99.2
PF01128221 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidyly 99.18
TIGR03584222 PseF pseudaminic acid CMP-transferase. The sequenc 99.17
COG0746192 MobA Molybdopterin-guanine dinucleotide biosynthes 99.14
COG2068199 Uncharacterized MobA-related protein [General func 99.12
PRK00560196 molybdopterin-guanine dinucleotide biosynthesis pr 99.1
COG1211230 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synt 98.99
PRK14490369 putative bifunctional molybdopterin-guanine dinucl 98.98
cd02518233 GT2_SpsF SpsF is a glycosyltrnasferase implicated 98.97
cd00897300 UGPase_euk Eukaryotic UGPase catalyses the synthes 98.92
PRK14500346 putative bifunctional molybdopterin-guanine dinucl 98.82
PLN02474 469 UTP--glucose-1-phosphate uridylyltransferase 98.76
COG1212247 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase 98.75
COG4284 472 UDP-glucose pyrophosphorylase [Carbohydrate transp 98.74
PF01704 420 UDPGP: UTP--glucose-1-phosphate uridylyltransferas 98.71
cd06424315 UGGPase UGGPase catalyzes the synthesis of UDP-Glu 98.71
PLN02435 493 probable UDP-N-acetylglucosamine pyrophosphorylase 98.64
PLN02830 615 UDP-sugar pyrophosphorylase 98.38
COG1083228 NeuA CMP-N-acetylneuraminic acid synthetase [Cell 98.18
PF02348217 CTP_transf_3: Cytidylyltransferase; InterPro: IPR0 97.94
COG1861241 SpsF Spore coat polysaccharide biosynthesis protei 97.75
PRK00576178 molybdopterin-guanine dinucleotide biosynthesis pr 97.66
KOG2388 477 consensus UDP-N-acetylglucosamine pyrophosphorylas 96.53
KOG2638 498 consensus UDP-glucose pyrophosphorylase [Carbohydr 96.41
cd00761156 Glyco_tranf_GTA_type Glycosyltransferase family A 96.23
TIGR03552195 F420_cofC 2-phospho-L-lactate guanylyltransferase 95.15
PF00535169 Glycos_transf_2: Glycosyl transferase family 2; In 94.08
PRK13412 974 fkp bifunctional fucokinase/L-fucose-1-P-guanylylt 89.9
cd06434235 GT2_HAS Hyaluronan synthases catalyze polymerizati 88.81
cd04179185 DPM_DPG-synthase_like DPM_DPG-synthase_like is a m 88.74
cd06423180 CESA_like CESA_like is the cellulose synthase supe 88.21
cd04186166 GT_2_like_c Subfamily of Glycosyltransferase Famil 88.13
PLN02726243 dolichyl-phosphate beta-D-mannosyltransferase 87.81
cd02525249 Succinoglycan_BP_ExoA ExoA is involved in the bios 87.76
cd04188211 DPG_synthase DPG_synthase is involved in protein N 85.76
PRK10073 328 putative glycosyl transferase; Provisional 85.62
PF07959 414 Fucokinase: L-fucokinase; InterPro: IPR012887 In t 85.24
cd06427241 CESA_like_2 CESA_like_2 is a member of the cellulo 82.72
cd06442224 DPM1_like DPM1_like represents putative enzymes si 82.23
cd02510299 pp-GalNAc-T pp-GalNAc-T initiates the formation of 80.9
cd06439251 CESA_like_1 CESA_like_1 is a member of the cellulo 80.15
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=3.3e-48  Score=365.20  Aligned_cols=216  Identities=43%  Similarity=0.694  Sum_probs=196.4

Q ss_pred             CCCCCCCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCC
Q 018939           86 PQADPKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGN  165 (348)
Q Consensus        86 ~~~~~~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~  165 (348)
                      .+++ +.|+||||.||.||||+|||..+|||++|++++ |||+|++++|+++||++|+++++|+++++++|+.+.|    
T Consensus         4 ~~~~-~~vkaiILvGG~GTRLrPLT~t~pKPlVpfgn~-pmI~hqieal~nsGi~~I~la~~y~s~sl~~~~~k~y----   77 (371)
T KOG1322|consen    4 RPAD-QSVKAIILVGGYGTRLRPLTLTRPKPLVPFGNK-PMILHQIEALINSGITKIVLATQYNSESLNRHLSKAY----   77 (371)
T ss_pred             cccc-cceeEEEEecCCCceeeceeccCCCcccccCcc-hhhHHHHHHHHhCCCcEEEEEEecCcHHHHHHHHHHh----
Confidence            3445 789999999999999999999999999999966 9999999999999999999999999999999999998    


Q ss_pred             CcccCCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccCHHHHHHHHHhcCCcEEE
Q 018939          166 GVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITV  245 (348)
Q Consensus       166 g~~~~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d~~~ll~~h~~~~aditi  245 (348)
                      +.++|   |+|+++.|++    +.|++||++++|+++|.++      +.+|+|++||++|+++|++|+++|+++++++|+
T Consensus        78 ~~~lg---Vei~~s~ete----plgtaGpl~laR~~L~~~~------~~~ffVLnsDvi~~~p~~~~vqfH~~~gae~TI  144 (371)
T KOG1322|consen   78 GKELG---VEILASTETE----PLGTAGPLALARDFLWVFE------DAPFFVLNSDVICRMPYKEMVQFHRAHGAEITI  144 (371)
T ss_pred             hhccc---eEEEEEeccC----CCcccchHHHHHHHhhhcC------CCcEEEecCCeeecCCHHHHHHHHHhcCCceEE
Confidence            33444   8999988876    6899999999999999885      249999999999999999999999999999999


Q ss_pred             EEEecCCCCCCcceEEEECC-CCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhh
Q 018939          246 SCVPMDDCRASDYGLMKIDR-SGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSS  324 (348)
Q Consensus       246 ~~~~~~~~~~~~~g~v~id~-~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~  324 (348)
                      ++.++++  ++.||+|++|+ .|+|++|.|||+  +..+                   +-++||+|+|++++|++++  .
T Consensus       145 ~~t~vde--pSkyGvv~~d~~~grV~~F~EKPk--d~vs-------------------nkinaGiYi~~~~vL~ri~--~  199 (371)
T KOG1322|consen  145 VVTKVDE--PSKYGVVVIDEDTGRVIRFVEKPK--DLVS-------------------NKINAGIYILNPEVLDRIL--L  199 (371)
T ss_pred             EEEeccC--ccccceEEEecCCCceeEehhCch--hhhh-------------------ccccceEEEECHHHHhHhh--h
Confidence            9999987  89999999999 899999999998  3332                   4457999999999999987  4


Q ss_pred             CCCCcchhhhhHHhccccCCeee
Q 018939          325 YPLSNDFGSEIIPASVKDHNVQV  347 (348)
Q Consensus       325 ~~~~~d~~~diip~l~~~~~v~~  347 (348)
                      +|++  |++|++|.++++++|||
T Consensus       200 ~ptS--iekEifP~~a~~~~l~a  220 (371)
T KOG1322|consen  200 RPTS--IEKEIFPAMAEEHQLYA  220 (371)
T ss_pred             cccc--hhhhhhhhhhhcCceEE
Confidence            5766  99999999999999997

>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02241 glucose-1-phosphate adenylyltransferase Back     alignment and domain information
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional Back     alignment and domain information
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional Back     alignment and domain information
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional Back     alignment and domain information
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional Back     alignment and domain information
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry Back     alignment and domain information
>PRK10122 GalU regulator GalF; Provisional Back     alignment and domain information
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase Back     alignment and domain information
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit Back     alignment and domain information
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins Back     alignment and domain information
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional Back     alignment and domain information
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase Back     alignment and domain information
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase Back     alignment and domain information
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars Back     alignment and domain information
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase Back     alignment and domain information
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase Back     alignment and domain information
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit Back     alignment and domain information
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form Back     alignment and domain information
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose Back     alignment and domain information
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family Back     alignment and domain information
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2 Back     alignment and domain information
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose Back     alignment and domain information
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional Back     alignment and domain information
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases Back     alignment and domain information
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase Back     alignment and domain information
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form Back     alignment and domain information
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family Back     alignment and domain information
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch Back     alignment and domain information
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose Back     alignment and domain information
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule Back     alignment and domain information
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline Back     alignment and domain information
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity Back     alignment and domain information
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional Back     alignment and domain information
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU Back     alignment and domain information
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional Back     alignment and domain information
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional Back     alignment and domain information
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2 Back     alignment and domain information
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional Back     alignment and domain information
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase Back     alignment and domain information
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional Back     alignment and domain information
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase Back     alignment and domain information
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional Back     alignment and domain information
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional Back     alignment and domain information
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional Back     alignment and domain information
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional Back     alignment and domain information
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional Back     alignment and domain information
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional Back     alignment and domain information
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional Back     alignment and domain information
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide Back     alignment and domain information
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional Back     alignment and domain information
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02917 CMP-KDO synthetase Back     alignment and domain information
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B Back     alignment and domain information
>TIGR00454 conserved hypothetical protein TIGR00454 Back     alignment and domain information
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function Back     alignment and domain information
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production Back     alignment and domain information
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase Back     alignment and domain information
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety Back     alignment and domain information
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Back     alignment and domain information
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family Back     alignment and domain information
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed Back     alignment and domain information
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional Back     alignment and domain information
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide Back     alignment and domain information
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional Back     alignment and domain information
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc Back     alignment and domain information
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism] Back     alignment and domain information
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed Back     alignment and domain information
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB Back     alignment and domain information
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial Back     alignment and domain information
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes Back     alignment and domain information
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Back     alignment and domain information
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional Back     alignment and domain information
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional Back     alignment and domain information
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional Back     alignment and domain information
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate [] Back     alignment and domain information
>TIGR03584 PseF pseudaminic acid CMP-transferase Back     alignment and domain information
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism] Back     alignment and domain information
>COG2068 Uncharacterized MobA-related protein [General function prediction only] Back     alignment and domain information
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional Back     alignment and domain information
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism] Back     alignment and domain information
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional Back     alignment and domain information
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat Back     alignment and domain information
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose Back     alignment and domain information
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional Back     alignment and domain information
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase Back     alignment and domain information
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2 Back     alignment and domain information
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose Back     alignment and domain information
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase Back     alignment and domain information
>PLN02830 UDP-sugar pyrophosphorylase Back     alignment and domain information
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2 Back     alignment and domain information
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional Back     alignment and domain information
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold Back     alignment and domain information
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC Back     alignment and domain information
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional Back     alignment and domain information
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan Back     alignment and domain information
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily Back     alignment and domain information
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily Back     alignment and domain information
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function Back     alignment and domain information
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase Back     alignment and domain information
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan Back     alignment and domain information
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation Back     alignment and domain information
>PRK10073 putative glycosyl transferase; Provisional Back     alignment and domain information
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase [] Back     alignment and domain information
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily Back     alignment and domain information
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1 Back     alignment and domain information
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans Back     alignment and domain information
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query348
1yp2_A 451 Crystal Structure Of Potato Tuber Adp-Glucose Pyrop 3e-82
3brk_X 420 Crystal Structure Of Adp-Glucose Pyrophosphorylase 5e-39
1lvw_A295 Crystal Structure Of Glucose-1-phosphate Thymidylyl 4e-08
3hl3_A269 2.76 Angstrom Crystal Structure Of A Putative Gluco 1e-06
1h5s_D293 Thymidylyltransferase Complexed With Tmp Length = 2 1e-06
1h5s_A293 Thymidylyltransferase Complexed With Tmp Length = 2 2e-06
1h5r_B293 Thymidylyltransferase Complexed With Thimidine And 2e-06
1h5t_A293 Thymidylyltransferase Complexed With Thymidylyldiph 2e-06
1mp5_A292 Y177f Variant Of S. Enterica Rmla Length = 292 2e-06
1mp4_A292 W224h Variant Of S. Enterica Rmla Length = 292 3e-06
1iim_A292 Thymidylyltransferase Complexed With Ttp Length = 2 3e-06
1mp3_A292 L89t Variant Of S. Enterica Rmla Length = 292 4e-06
3pkp_A292 Q83s Variant Of S. Enterica Rmla With Datp Length = 5e-06
1fxo_A293 The Structural Basis Of The Catalytic Mechanism And 6e-06
4arw_A302 Pseudomonas Aeruginosa Rmla In Complex With Alloste 6e-06
4b2x_A303 Pseudomonas Aeruginosa Rmla In Complex With Alloste 7e-06
3pkq_A292 Q83d Variant Of S. Enterica Rmla With Dgtp Length = 8e-06
1g23_A293 The Structural Basis Of The Catalytic Mechanism And 3e-05
>pdb|1YP2|A Chain A, Crystal Structure Of Potato Tuber Adp-Glucose Pyrophosphorylase Length = 451 Back     alignment and structure 
Iteration: 1

 Score =  301 bits (772), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 141/236 (59%), Positives = 182/236 (77%), Gaps = 5/236 (2%)
Query: 104 TRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNL 163
           TRL+PLT +RAKPAVP+G NYRLIDIP+SNC+NS  +KI+++TQFNS SLNRHL+R+Y  
Sbjct: 32  TRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYAS 91
Query: 164 GNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH 223
             G    +GFVEVLAA Q+P      WFQGTADAVRQ++W+FE+     V   LIL+GDH
Sbjct: 92  NMGGYKNEGFVEVLAAQQSP--ENPDWFQGTADAVRQYLWLFEE---HTVLEYLILAGDH 146
Query: 224 LYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKG 283
           LYRMDY +F+Q H +T ADITV+ +PMD+ RA+ +GLMKID  G+II+FAEKP+G  L+ 
Sbjct: 147 LYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQA 206
Query: 284 MQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPAS 339
           M+ DTT+LGL    A + P+IASMG+Y+   DV+LNLLR  +P +NDFGSE+IP +
Sbjct: 207 MKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGA 262
>pdb|3BRK|X Chain X, Crystal Structure Of Adp-Glucose Pyrophosphorylase From Agrobacterium Tumefaciens Length = 420 Back     alignment and structure
>pdb|1LVW|A Chain A, Crystal Structure Of Glucose-1-phosphate Thymidylyltransferase, Rmla, Complex With Dtdp Length = 295 Back     alignment and structure
>pdb|3HL3|A Chain A, 2.76 Angstrom Crystal Structure Of A Putative Glucose-1-Phosphate Thymidylyltransferase From Bacillus Anthracis In Complex With A Sucrose. Length = 269 Back     alignment and structure
>pdb|1H5S|D Chain D, Thymidylyltransferase Complexed With Tmp Length = 293 Back     alignment and structure
>pdb|1H5S|A Chain A, Thymidylyltransferase Complexed With Tmp Length = 293 Back     alignment and structure
>pdb|1H5R|B Chain B, Thymidylyltransferase Complexed With Thimidine And Glucose- 1-Phospate Length = 293 Back     alignment and structure
>pdb|1H5T|A Chain A, Thymidylyltransferase Complexed With Thymidylyldiphosphate- Glucose Length = 293 Back     alignment and structure
>pdb|1MP5|A Chain A, Y177f Variant Of S. Enterica Rmla Length = 292 Back     alignment and structure
>pdb|1MP4|A Chain A, W224h Variant Of S. Enterica Rmla Length = 292 Back     alignment and structure
>pdb|1IIM|A Chain A, Thymidylyltransferase Complexed With Ttp Length = 292 Back     alignment and structure
>pdb|1MP3|A Chain A, L89t Variant Of S. Enterica Rmla Length = 292 Back     alignment and structure
>pdb|3PKP|A Chain A, Q83s Variant Of S. Enterica Rmla With Datp Length = 292 Back     alignment and structure
>pdb|1FXO|A Chain A, The Structural Basis Of The Catalytic Mechanism And Regulation Of Glucose-1-Phosphate Thymidylyltransferase (Rmla). Tmp Complex. Length = 293 Back     alignment and structure
>pdb|4ARW|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric Inhibitor Length = 302 Back     alignment and structure
>pdb|4B2X|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric Inhibitor Length = 303 Back     alignment and structure
>pdb|3PKQ|A Chain A, Q83d Variant Of S. Enterica Rmla With Dgtp Length = 292 Back     alignment and structure
>pdb|1G23|A Chain A, The Structural Basis Of The Catalytic Mechanism And Regulation Of Glucose-1-Phosphate Thymidylyltransferase (Rmla). Glucose-1-Phosphate Complex. Length = 293 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query348
1yp2_A 451 Glucose-1-phosphate adenylyltransferase small subu 1e-149
3brk_X 420 Glucose-1-phosphate adenylyltransferase; ADP-gluco 1e-132
1jyk_A254 LICC protein, CTP:phosphocholine cytidylytransfera 6e-15
2ggo_A 401 401AA long hypothetical glucose-1-phosphate thymid 2e-13
2xme_A232 CTP-inositol-1-phosphate cytidylyltransferase; CDP 3e-13
3rsb_A196 Adenosylcobinamide-phosphate guanylyltransferase; 2e-10
3pnn_A303 Conserved domain protein; structural genomics, PSI 9e-08
1tzf_A259 Glucose-1-phosphate cytidylyltransferase; nucleoti 6e-06
1fxo_A293 Glucose-1-phosphate thymidylyltransferase; rhamnos 1e-05
1mc3_A296 Glucose-1-phosphate thymidylyltransferase; glucose 2e-05
1lvw_A295 Glucose-1-phosphate thymidylyltransferase; protein 3e-05
4ecm_A269 Glucose-1-phosphate thymidylyltransferase; HET: DA 3e-05
4evw_A255 Nucleoside-diphosphate-sugar pyrophosphorylase; st 5e-05
2icy_A 469 Probable UTP-glucose-1-phosphate uridylyltransfera 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* Length = 451 Back     alignment and structure
 Score =  428 bits (1102), Expect = e-149
 Identities = 152/259 (58%), Positives = 195/259 (75%), Gaps = 6/259 (2%)

Query: 90  PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFN 149
            ++V  IILGGGAGTRL+PLT +RAKPAVP+G NYRLIDIP+SNC+NS  +KI+++TQFN
Sbjct: 18  SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFN 77

Query: 150 SFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAK 209
           S SLNRHL+R+Y    G    +GFVEVLAA Q+P      WFQGTADAVRQ++W+FE+  
Sbjct: 78  SASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPE--NPDWFQGTADAVRQYLWLFEE-- 133

Query: 210 NKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQI 269
              V   LIL+GDHLYRMDY +F+Q H +T ADITV+ +PMD+ RA+ +GLMKID  G+I
Sbjct: 134 -HTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRI 192

Query: 270 IQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSN 329
           I+FAEKP+G  L+ M+ DTT+LGL    A + P+IASMG+Y+   DV+LNLLR  +P +N
Sbjct: 193 IEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGAN 252

Query: 330 DFGSEIIPASVK-DHNVQV 347
           DFGSE+IP +      VQ 
Sbjct: 253 DFGSEVIPGATSLGMRVQA 271
>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} Length = 420 Back     alignment and structure
>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A* Length = 254 Back     alignment and structure
>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Length = 401 Back     alignment and structure
>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A* Length = 232 Back     alignment and structure
>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii} Length = 196 Back     alignment and structure
>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis} Length = 303 Back     alignment and structure
>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A* Length = 259 Back     alignment and structure
>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ... Length = 293 Back     alignment and structure
>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6 Length = 296 Back     alignment and structure
>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6 Length = 295 Back     alignment and structure
>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A* Length = 269 Back     alignment and structure
>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae} Length = 255 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query348
1yp2_A 451 Glucose-1-phosphate adenylyltransferase small subu 100.0
3juk_A281 UDP-glucose pyrophosphorylase (GALU); transfer; HE 100.0
3brk_X 420 Glucose-1-phosphate adenylyltransferase; ADP-gluco 99.97
4ecm_A269 Glucose-1-phosphate thymidylyltransferase; HET: DA 99.97
3st8_A 501 Bifunctional protein GLMU; acetyltransferase, pyro 99.96
2e3d_A302 UTP--glucose-1-phosphate uridylyltransferase; UDP- 99.96
1tzf_A259 Glucose-1-phosphate cytidylyltransferase; nucleoti 99.96
4evw_A255 Nucleoside-diphosphate-sugar pyrophosphorylase; st 99.96
2ux8_A297 Glucose-1-phosphate uridylyltransferase; UGPG, GAL 99.96
3pnn_A303 Conserved domain protein; structural genomics, PSI 99.96
1fxo_A293 Glucose-1-phosphate thymidylyltransferase; rhamnos 99.96
1lvw_A295 Glucose-1-phosphate thymidylyltransferase; protein 99.95
2pa4_A323 UTP-glucose-1-phosphate uridylyltransferase; phosp 99.95
1mc3_A296 Glucose-1-phosphate thymidylyltransferase; glucose 99.95
2qh5_A308 PMI, ALGA, mannose-6-phosphate isomerase; structur 99.95
2x65_A 336 Mannose-1-phosphate guanylyltransferase; nucleotid 99.93
1hm9_A 468 GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr 99.92
1jyk_A254 LICC protein, CTP:phosphocholine cytidylytransfera 99.91
2cu2_A 337 Putative mannose-1-phosphate guanylyl transferase; 99.91
3oam_A252 3-deoxy-manno-octulosonate cytidylyltransferase; c 99.9
4fce_A 459 Bifunctional protein GLMU; GLMU. csgid, niaid, str 99.9
2v0h_A 456 Bifunctional protein GLMU; cell WALL, magnesium, c 99.88
2ggo_A 401 401AA long hypothetical glucose-1-phosphate thymid 99.87
3k8d_A264 3-deoxy-manno-octulosonate cytidylyltransferase; K 99.85
3tqd_A256 3-deoxy-manno-octulosonate cytidylyltransferase; c 99.84
2y6p_A234 3-deoxy-manno-octulosonate cytidylyltransferase; l 99.82
1h7e_A245 3-deoxy-manno-octulosonate cytidylyltransferase; n 99.81
2xme_A232 CTP-inositol-1-phosphate cytidylyltransferase; CDP 99.81
1vic_A262 3-deoxy-manno-octulosonate cytidylyltransferase; s 99.79
2icy_A 469 Probable UTP-glucose-1-phosphate uridylyltransfera 99.76
1ezi_A228 CMP-N-acetylneuraminic acid synthetase; homodimer, 99.75
3f1c_A246 Putative 2-C-methyl-D-erythritol 4-phosphate cytid 99.75
2i5k_A 488 UTP--glucose-1-phosphate uridylyltransferase; LEFT 99.74
4fcu_A253 3-deoxy-manno-octulosonate cytidylyltransferase; s 99.74
1jv1_A 505 Glcnac1P uridyltransferase isoform 1: AGX1; nucleo 99.73
2vsh_A236 TARI, 2-C-methyl-D-erythritol 4-phosphate cytidyly 99.71
2dpw_A232 Hypothetical protein TTHA0179; transferase, struct 99.7
2yc3_A228 2-C-methyl-D-erythritol 4-phosphate cytidylyltran 99.7
1vgw_A231 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; 99.69
2xwl_A223 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; 99.68
1qwj_A229 Cytidine monophospho-N-acetylneuraminic acid synth 99.65
3rsb_A196 Adenosylcobinamide-phosphate guanylyltransferase; 99.65
2waw_A199 MOBA relate protein; unknown function; HET: PGE; 1 99.61
1i52_A236 4-diphosphocytidyl-2-C-methylerythritol synthase; 99.6
2wee_A197 MOBA-related protein; unknown function; 1.65A {Myc 99.6
2oeg_A 505 UTP-glucose-1-phosphate uridylyltransferase 2, put 99.59
3oc9_A 405 UDP-N-acetylglucosamine pyrophosphorylase; structu 99.59
3q80_A231 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; 99.56
2yqc_A 486 UDP-N-acetylglucosamine pyrophosphorylase; uridine 99.55
1vpa_A234 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; 99.5
3d5n_A197 Q97W15_sulso; NESG, SSR125, structural genomics, P 99.5
2px7_A236 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans 99.48
1e5k_A201 Molybdopterin-guanine dinucleotide biosynthesis pr 99.47
2e8b_A201 Probable molybdopterin-guanine dinucleotide biosy 99.36
3ngw_A208 Molybdopterin-guanine dinucleotide biosynthesis P 99.35
1w55_A 371 ISPD/ISPF bifunctional enzyme; biosynthetic pathwa 99.25
3r3i_A 528 UTP--glucose-1-phosphate uridylyltransferase; ross 98.63
3gue_A 484 UTP-glucose-1-phosphate uridylyltransferase 2; pho 98.51
3ogz_A 630 UDP-sugar pyrophosphorylase; LEFT handed beta heli 98.41
2i5e_A211 Hypothetical protein MM_2497; APC86122, methanosar 97.04
2iu8_A 374 LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a 96.49
1qg8_A255 Protein (spore coat polysaccharide biosynthesis P 91.17
3bcv_A240 Putative glycosyltransferase protein; protein stru 90.28
3cgx_A242 Putative nucleotide-diphospho-sugar transferase; Y 81.55
>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* Back     alignment and structure
Probab=100.00  E-value=1.3e-34  Score=289.39  Aligned_cols=252  Identities=60%  Similarity=1.059  Sum_probs=189.9

Q ss_pred             CCCCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcc
Q 018939           89 DPKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVN  168 (348)
Q Consensus        89 ~~~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~  168 (348)
                      +|++|++||||||.||||+|||..+||||+||+|+||||+|++++|.++|+++|+|++++..+++.+|+.+.|  +.+..
T Consensus        17 ~~~~~~avILAaG~gtRl~plT~~~pK~llpi~g~~pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~--~~~~~   94 (451)
T 1yp2_A           17 ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAY--ASNMG   94 (451)
T ss_dssp             HHHHEEEEEC------CCTTTTTTSCGGGCEETTTEETTHHHHHHHHHTTCCEEEEEESCCCHHHHHHHHHHC--C----
T ss_pred             cccceEEEEECCCCCCcccchhcCCcceeeEECCcceeHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHhhhh--hcccc
Confidence            4567999999999999999999999999999999878999999999999999999999999999999997655  11110


Q ss_pred             -c-CCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccCHHHHHHHHHhcCCcEEEE
Q 018939          169 -F-GDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVS  246 (348)
Q Consensus       169 -~-~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d~~~ll~~h~~~~aditi~  246 (348)
                       + ..+.++++...|.+  ..++|..||+++++.++.++.+   ...++|+|++||++++.++.++++.|.+.++++|++
T Consensus        95 ~~~~~~~v~i~~~~~~~--~~~~~~~Gt~~al~~a~~~~~~---~~~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~tl~  169 (451)
T 1yp2_A           95 GYKNEGFVEVLAAQQSP--ENPDWFQGTADAVRQYLWLFEE---HTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVA  169 (451)
T ss_dssp             ----CCEEEEEESCSST--TSCCCCCSHHHHHHHTHHHHTT---SCCSEEEEECSCEECCCCHHHHHHHHHHTTCSEEEE
T ss_pred             cccccCcEEEecccccc--cccccccCcHHHHHHHHHHHHh---cCCCeEEEecCcEEEcCCHHHHHHHHHHcCCcEEEE
Confidence             1 12336666544432  2346778999999999988842   135899999999999999999999999999999999


Q ss_pred             EEecCCCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhhCC
Q 018939          247 CVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYP  326 (348)
Q Consensus       247 ~~~~~~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~~~  326 (348)
                      +.+...+..++||++.+|++|+|..|.|||..+..+.++++..+++..+.......+++++|+|+|++++|..+++...+
T Consensus       170 ~~~~~~~~~~~~g~v~~d~~~~v~~~~ekp~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~  249 (451)
T 1yp2_A          170 ALPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFP  249 (451)
T ss_dssp             EEEECHHHHTTSEEEEECTTSBEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTCT
T ss_pred             EEEcChhhcccCCEEEECCCCCEEEEEECCCchhhccccccccccccccccccCCcceEEeeEEEEcHHHHHHHHHhhcc
Confidence            88875323578999999999999999999975433334444444443221111135789999999999999877776556


Q ss_pred             CCcchhhhhHHhcccc-CCeee
Q 018939          327 LSNDFGSEIIPASVKD-HNVQV  347 (348)
Q Consensus       327 ~~~d~~~diip~l~~~-~~v~~  347 (348)
                      ...+|.+++++.++++ .++++
T Consensus       250 ~~~~~~~~~l~~~i~~g~~v~~  271 (451)
T 1yp2_A          250 GANDFGSEVIPGATSLGMRVQA  271 (451)
T ss_dssp             TCCCTTTTHHHHHHHTTCCEEE
T ss_pred             cccchHhhHHHHHHhcCCceEE
Confidence            6678888999998886 66654
>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A* Back     alignment and structure
>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} Back     alignment and structure
>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A* Back     alignment and structure
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* Back     alignment and structure
>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli} Back     alignment and structure
>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A* Back     alignment and structure
>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae} Back     alignment and structure
>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea} Back     alignment and structure
>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis} Back     alignment and structure
>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ... Back     alignment and structure
>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6 Back     alignment and structure
>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6 Back     alignment and structure
>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori} Back     alignment and structure
>2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A* Back     alignment and structure
>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* Back     alignment and structure
>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A* Back     alignment and structure
>2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20 Back     alignment and structure
>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13 Back     alignment and structure
>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* Back     alignment and structure
>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* Back     alignment and structure
>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Back     alignment and structure
>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A* Back     alignment and structure
>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0 Back     alignment and structure
>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus} Back     alignment and structure
>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A* Back     alignment and structure
>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A* Back     alignment and structure
>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A* Back     alignment and structure
>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A Back     alignment and structure
>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0 Back     alignment and structure
>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae} Back     alignment and structure
>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A Back     alignment and structure
>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A* Back     alignment and structure
>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A* Back     alignment and structure
>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19 Back     alignment and structure
>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A* Back     alignment and structure
>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A Back     alignment and structure
>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A* Back     alignment and structure
>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13 Back     alignment and structure
>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii} Back     alignment and structure
>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP} Back     alignment and structure
>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A Back     alignment and structure
>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A Back     alignment and structure
>2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A* Back     alignment and structure
>3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica} Back     alignment and structure
>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A* Back     alignment and structure
>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A* Back     alignment and structure
>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13 Back     alignment and structure
>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus} Back     alignment and structure
>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8} Back     alignment and structure
>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A* Back     alignment and structure
>2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus} Back     alignment and structure
>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus} Back     alignment and structure
>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A* Back     alignment and structure
>3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A Back     alignment and structure
>3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei} Back     alignment and structure
>3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A* Back     alignment and structure
>2i5e_A Hypothetical protein MM_2497; APC86122, methanosarcina mazei GO1, hypothetic protein, STRU genomics, PSI-2, protein structure initiative; 2.10A {Methanosarcina mazei} SCOP: c.68.1.21 Back     alignment and structure
>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A* Back     alignment and structure
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A* Back     alignment and structure
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis} Back     alignment and structure
>3cgx_A Putative nucleotide-diphospho-sugar transferase; YP_389115.1, joint center for structural genomics; 1.90A {Desulfovibrio desulfuricans subsp} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 348
d1yp2a2307 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltr 2e-53
d1fxoa_292 c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa 5e-32
d1lvwa_295 c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacteri 2e-29
d1mc3a_291 c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} 3e-27
d2icya2378 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 5e-23
d1tzfa_259 c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransf 5e-14
d1jyka_229 c.68.1.13 (A:) CTP:phosphocholine cytidylytransfer 6e-09
d1g97a2250 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate 1e-08
d2cu2a2268 c.68.1.20 (A:1-268) Putative mannose-1-phosphate g 5e-06
d2oi6a2248 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate 3e-05
d2dpwa1231 c.68.1.19 (A:1-231) Uncharacterized protein TTHA01 0.002
d1w77a1226 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl- 0.003
>d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 307 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

 Score =  176 bits (446), Expect = 2e-53
 Identities = 149/252 (59%), Positives = 192/252 (76%), Gaps = 5/252 (1%)

Query: 91  KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNS 150
           ++V  IILGGGAGTRL+PLT +RAKPAVP+G NYRLIDIP+SNC+NS  +KI+++TQFNS
Sbjct: 10  RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNS 69

Query: 151 FSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKN 210
            SLNRHL+R+Y    G    +GFVEVLAA Q+P      WFQGTADAVRQ++W+F   + 
Sbjct: 70  ASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPD--WFQGTADAVRQYLWLF---EE 124

Query: 211 KNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQII 270
             V   LIL+GDHLYRMDY +F+Q H +T ADITV+ +PMD+ RA+ +GLMKID  G+II
Sbjct: 125 HTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRII 184

Query: 271 QFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSND 330
           +FAEKP+G  L+ M+ DTT+LGL    A + P+IASMG+Y+   DV+LNLLR  +P +ND
Sbjct: 185 EFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGAND 244

Query: 331 FGSEIIPASVKD 342
           FGSE+IP +   
Sbjct: 245 FGSEVIPGATSL 256
>d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} Length = 292 Back     information, alignment and structure
>d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 295 Back     information, alignment and structure
>d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} Length = 291 Back     information, alignment and structure
>d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 378 Back     information, alignment and structure
>d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]} Length = 259 Back     information, alignment and structure
>d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]} Length = 229 Back     information, alignment and structure
>d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 250 Back     information, alignment and structure
>d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]} Length = 268 Back     information, alignment and structure
>d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 248 Back     information, alignment and structure
>d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]} Length = 231 Back     information, alignment and structure
>d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Length = 226 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query348
d1yp2a2307 Glucose-1-phosphate adenylyltransferase small subu 100.0
d1fxoa_292 RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} 100.0
d1mc3a_291 RffH {Escherichia coli [TaxId: 562]} 100.0
d1lvwa_295 RmlA (RfbA) {Archaeon Methanobacterium thermoautot 99.98
d2cu2a2268 Putative mannose-1-phosphate guanylyl transferase 99.95
d1jyka_229 CTP:phosphocholine cytidylytransferase LicC {Strep 99.94
d1tzfa_259 Glucose-1-phosphate cytidylyltransferase RfbF {Sal 99.94
d1g97a2250 N-acetylglucosamine 1-phosphate uridyltransferase 99.91
d2oi6a2248 N-acetylglucosamine 1-phosphate uridyltransferase 99.87
d1i52a_225 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) 99.61
d1w77a1226 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) 99.53
d2dpwa1231 Uncharacterized protein TTHA0179 {Thermus thermoph 99.48
d1vgwa_226 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) 99.48
d1vpaa_221 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) 99.47
d2icya2378 UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale c 99.43
d1e5ka_188 Molybdenum cofactor biosynthesis protein MobA {Esc 99.28
d1vh1a_246 CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn 99.22
d1vica_255 CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn 99.18
d1w55a1205 IspD/IspF bifunctional enzyme, CDP-me synthase dom 99.17
d1h7ea_245 CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)syn 99.11
d1eyra_225 CMP acylneuraminate synthetase {Neisseria meningit 99.08
d1qwja_228 CMP acylneuraminate synthetase {Mouse (Mus musculu 98.94
d1jv1a_ 501 UDP-N-acetylglucosamine pyrophosphorylase {Human ( 98.7
d1omza_265 Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-Ga 90.09
d1qg8a_255 Spore coat polysaccharide biosynthesis protein Sps 82.4
d1xhba2328 Polypeptide N-acetylgalactosaminyltransferase 1, N 81.64
>d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: glucose-1-phosphate thymidylyltransferase
domain: Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=100.00  E-value=5.4e-38  Score=294.48  Aligned_cols=252  Identities=60%  Similarity=1.039  Sum_probs=203.3

Q ss_pred             CCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccC
Q 018939           91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFG  170 (348)
Q Consensus        91 ~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~  170 (348)
                      +++.|||||||.||||+|||..+||||+||+|++|||+|++++|.++||++|+|++++..+++.+|+.+.|...-.....
T Consensus        10 ~~~~AIILAaG~GtRL~plT~~~PK~llpv~g~~plI~~~l~~l~~~gi~~I~Iv~~~~~~~i~~~l~~~~~~~l~~~~~   89 (307)
T d1yp2a2          10 RSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKN   89 (307)
T ss_dssp             HHEEEEEC------CCTTTTTTSCGGGCEETTTEETTHHHHHHHHHTTCCEEEEEESCCCHHHHHHHHHHCC--------
T ss_pred             CceEEEEECCCCcccCChhhcCCCcceEEECCCCCHHHHHHHHHHHcCCCEEEEEeccccccchhhhhcccccccccccc
Confidence            45899999999999999999999999999999779999999999999999999999999999999998776221111112


Q ss_pred             CCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccCHHHHHHHHHhcCCcEEEEEEec
Q 018939          171 DGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPM  250 (348)
Q Consensus       171 ~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d~~~ll~~h~~~~aditi~~~~~  250 (348)
                      .+...++...+..  .+..|..|++++++.+++.+.+   ...++|+|++||++++.|+..+++.|+.++++++++....
T Consensus        90 ~~~~~~~~~~~~~--~~~~~~~g~~~ai~~~~~~i~~---~~~~~~iv~~~D~~~~~d~~~~~~~~~~~~~~~~~~~~~~  164 (307)
T d1yp2a2          90 EGFVEVLAAQQSP--ENPDWFQGTADAVRQYLWLFEE---HTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPM  164 (307)
T ss_dssp             CCEEEEEESCSST--TSCCCCCSHHHHHHHTHHHHTT---SCCSEEEEECSCEECCCCHHHHHHHHHHTTCSEEEEEEEE
T ss_pred             cccceeeceeeec--cccccccchhHHHHHhHHhhhc---cccceEEEecCcceeccchhhhhhhhhhccccceEEEEec
Confidence            2334555554443  3456789999999999999864   3568999999999999999999999999999999988877


Q ss_pred             CCCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhhCCCCcc
Q 018939          251 DDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSND  330 (348)
Q Consensus       251 ~~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~~~~~~d  330 (348)
                      .++....||++.+|++|+|..|.|||.......+.+++.++++.........+++++|+|+|++++|..++++..+..++
T Consensus       165 ~~~~~~~~gvv~~d~~~~v~~~~Ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~giyi~~~~~l~~~~~~~~~~~~~  244 (307)
T d1yp2a2         165 DEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGAND  244 (307)
T ss_dssp             CHHHHTTSEEEEECTTSBEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTCTTCCC
T ss_pred             ccccccccceEEECCCCcEEEEEECCCCcccccccccccccccccchhhcccchhhCceEEECHHHHHHHhhhccccccc
Confidence            66556789999999999999999999877666667777777776655555678999999999999999999888888899


Q ss_pred             hhhhhHHhcccc-CCeee
Q 018939          331 FGSEIIPASVKD-HNVQV  347 (348)
Q Consensus       331 ~~~diip~l~~~-~~v~~  347 (348)
                      +..|+++.++++ ++|++
T Consensus       245 ~~~d~i~~li~~g~~v~~  262 (307)
T d1yp2a2         245 FGSEVIPGATSLGMRVQA  262 (307)
T ss_dssp             TTTTHHHHHHHTTCCEEE
T ss_pred             hHHHHHHHHHHCCCcEEE
Confidence            999999998886 56764
>d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Back     information, alignment and structure
>d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]} Back     information, alignment and structure
>d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vh1a_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KdsB [TaxId: 562]} Back     information, alignment and structure
>d1vica_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId: 562]} Back     information, alignment and structure
>d1eyra_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
>d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase {Human (Homo sapiens), AGX1 [TaxId: 9606]} Back     information, alignment and structure
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure