Citrus Sinensis ID: 018960

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35
Protein Sequence
MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSEIIKSKGKLYAALNKVKESNYSTQKIATSYVPTTAIPKSSSGIHPIPTTPEASVGMHSIPTIPEATAGIHPTPAITEASTGMHPTSAAIEVSTGMHSTAADSETSTGMNLPCHPFKKPKLEPPSEPVVLPIPFVPPVLGQHSEGGSSSTNKRRKNKRKANKKLRTDAQPCVSAQPLTQVPPCSVAQ
Secondary Structure (PSIPRED)
cHHHHHHHHHHHccccccEEEEEEccccccccEEEEEEEccEEEccccccccHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHcccccccEEEEEcccccccEEEEEEEccEEEcccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHccccccEEEEcccccccccEEEEEEEEccEEcccccccccHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHccccccEEEEccccccccEEEEEEEEccEEEcccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccEccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mhknrlqehaqrsgiplpvyqshnegfqhapkfrasvsvdgvtytspntfshrKAAEQDVAKIALECISKKikdegcplinqdTVFCKSILNEFAVKMNlelpaystrqseaLLPVFVSSLVFngvtytgepgrskKEAEQLAARAVIRTLLVTSGSATILSEIIKSKGKLYAALNKvkesnystqkiatsyvpttaipksssgihpipttpeasvgmhsiptipeatagihptpaiteastgmhptsaaievstgmhstaadsetstgmnlpchpfkkpkleppsepvvlpipfvppvlgqhseggssstnkrRKNKRKANKKlrtdaqpcvsaqpltqvppcsvaq
Flexible Loop (DISEMBL)
mhknrlqehaqrsgiplpvYQSHNEGFQHAPKFRASVSVDGVTYTSpntfshrkaaEQDVAKIALECISKKikdegcpliNQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTytgepgrskkEAEQLAARAVIRTLlvtsgsatilSEIIKSKGKLYAALNKvkesnystqkIATSYVPTtaipksssgihPIPTTPEASVGMHSIPTIPEATAGIHPTPAITEASTGMHPTSAAIEVSTGMHSTAADSETSTGMNLPCHPFKKPKLEPPSEPVVLPIPFVPPvlgqhseggssstnkrrknkrkankklrtdaqpcvsaqpltqvppcsvaq
Low Complexity Region (SEG)
MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSEIIKSKGKLYAALNKVKESNYSTQKIATSYVPTTAIPKSSSGIHPIPTTPEASVGMHSIPTIPEATAGIHPTPAITEASTGMHPTSAAIEVSTGMHSTAADSETSTGMNLPCHPFKKPKLEPPSEpvvlpipfvppvlGQHSEGGSSSTnkrrknkrkankkLRTDAQPCVSAQPLTQVPPCSVAQ
Disordered region (IsUnstruct)
************************************VSVDGVTYT****F*****AEQDVAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTG***********LAARAVIRTLLVTSGSATILSEIIKSKGKLYAALNKVKESNYSTQKIATSYV***********************************************************************************************************************************************************
Disordered Region (DISOPRED)
MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTS********AAEQDVAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTY*********EAEQLAARAVIRT**********************************************************************************************************************************************IP****************************************AQPLTQVPP*****
Disordered Region (DISEMBL)
***********RSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSEIIKSKGKLYAALNKVKESNYSTQKIATSYVPTTAIPKSSSGIHPIPTTPEASVGMHSIPTIPEATAGIHPTPAITEASTGMHPTSAAIEVST*************GMNLPCHPFKKPKLEPPSEPVVLPIPFVPPVLG***************************AQPCVSAQPLTQVPPCSVAQ
Disordered Region (DISPRO)
MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKK****GCPL**QDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVT*****************************************************************************************************************TG*N***************EPVVLPIPFVP*****************************TDAQPCVSAQPLT*V*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSEIIKSKGKLYAALNKVKESNYSTQKIATSYVPTTAIPKSSSGIHPIPTTPEASVGMHSIPTIPEATAGIHPTPAITEASTGMHPTSAAIEVSTGMHSTAADSETSTGMNLPCHPFKKPKLEPPSEPVVLPIPFVPPVLGQHSEGGSSSTNKRRKNKRKANKKLRTDAQPCVSAQPLTQVPPCSVAQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	348	2.2.26 [Sep-21-2011]
Q6YW64	312	Double-stranded RNA-bindi	yes	no	0.525	0.586	0.402	9e-30
Q0IV63	473	Double-stranded RNA-bindi	no	no	0.485	0.357	0.377	3e-23
Q0IQN6	424	Double-stranded RNA-bindi	no	no	0.485	0.398	0.377	4e-23
Q0DJA3	437	Double-stranded RNA-bindi	no	no	0.485	0.386	0.377	9e-23
O04492	419	Double-stranded RNA-bindi	yes	no	0.419	0.348	0.392	7e-22
Q0DKP4	593	Double-stranded RNA-bindi	no	no	0.433	0.254	0.392	1e-20
Q9SKN2	434	Double-stranded RNA-bindi	no	no	0.433	0.347	0.379	4e-20
Q8GY79	393	Double-stranded RNA-bindi	no	no	0.431	0.381	0.370	5e-19
Q9LJF5	359	Double-stranded RNA-bindi	no	no	0.431	0.417	0.370	2e-18
B7E321	404	Double-stranded RNA-bindi	no	no	0.431	0.371	0.363	5e-18

>sp|Q6YW64|DRB4_ORYSJ Double-stranded RNA-binding protein 4 OS=Oryza sativa subsp. japonica GN=DRB4 PE=2 SV=1

 Score =  131 bits (329), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 80/199 (40%), Positives = 125/199 (62%), Gaps = 16/199 (8%)

Query: 2   HKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHR--KAAEQD 59
           +K++LQE+ Q++   LP+Y +  +G  H  KF+++V VDG  ++S  TF HR  K AEQD
Sbjct: 39  YKSKLQEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDGEEFSS--TFCHRRVKDAEQD 96

Query: 60  VAKIALECISKKIKDEG-----CPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALL 114
            AK+A + + ++ + E        LI+QD VF KSIL+E+  K   + P YS  ++E  +
Sbjct: 97  AAKVAYDTLLERKETETDDTDVFELIDQDVVFSKSILHEYTTKTKTDQPEYSVTKTEGSV 156

Query: 115 PVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSEIIKSKGKLYAA 174
             +VSS+ F G TYTG   R+KK+AEQ AARA +++LL T  + T +++I++SK KL  A
Sbjct: 157 TPYVSSVSFAGHTYTGGAARNKKDAEQKAARAAVKSLLAT--NYTSMAKIVRSKEKLIRA 214

Query: 175 L-----NKVKESNYSTQKI 188
           +     NK  +SN + +K+
Sbjct: 215 ISPSGYNKGIDSNPTNKKL 233

Binds double-stranded RNA.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q0IV63|DRB7_ORYSJ Double-stranded RNA-binding protein 7 OS=Oryza sativa subsp. japonica GN=DRB7 PE=2 SV=1

 Score =  109 bits (273), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 65/172 (37%), Positives = 101/172 (58%), Gaps = 3/172 (1%)

Query: 1   MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 60
           + K+RLQE+AQ++G+  P Y +  EG  H P F+++V ++  +Y S   F +RKAAEQ  
Sbjct: 33  VFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSA 92

Query: 61  AKIALECISKKI-KDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVS 119
           A++AL  I K I  +   P + Q+T  CK++L E+A KMN  +P+Y   +S + L  F+ 
Sbjct: 93  AEVALMEIVKSIPANANIPAV-QETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAPFIC 151

Query: 120 SLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTS-GSATILSEIIKSKGK 170
           ++   G+ Y G   R+KK+AE  AAR  +  +   S GSA   ++ I   GK
Sbjct: 152 TVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQSEGSANGATKYIVVPGK 203

Binds double-stranded RNA.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q0IQN6|DRB8_ORYSJ Double-stranded RNA-binding protein 8 OS=Oryza sativa subsp. japonica GN=DRB8 PE=2 SV=1

 Score =  108 bits (271), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 65/172 (37%), Positives = 101/172 (58%), Gaps = 3/172 (1%)

Query: 1   MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 60
           + K+RLQE+AQ++G+  P Y +  EG  H P F+++V ++  +Y S   F +RKAAEQ  
Sbjct: 33  VFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSA 92

Query: 61  AKIALECISKKI-KDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVS 119
           A++AL  I K I  +   P + Q+T  CK++L E+A KMN  +P+Y   +S + L  F+ 
Sbjct: 93  AEVALMEIVKSIPANANIPAV-QETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAPFIC 151

Query: 120 SLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTS-GSATILSEIIKSKGK 170
           ++   G+ Y G   R+KK+AE  AAR  +  +   S GSA   ++ I   GK
Sbjct: 152 TVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQSEGSANGATKYIVVPGK 203

Binds double-stranded RNA.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q0DJA3|DRB3_ORYSJ Double-stranded RNA-binding protein 3 OS=Oryza sativa subsp. japonica GN=DRB3 PE=2 SV=1

 Score =  108 bits (269), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 65/172 (37%), Positives = 101/172 (58%), Gaps = 3/172 (1%)

Query: 1   MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 60
           + K+RLQE+AQ++G+  P Y +  EG  H P F+++V ++  +Y S   FS+RKAAEQ  
Sbjct: 35  VFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSA 94

Query: 61  AKIALECISKKI-KDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVS 119
           A++AL  I K I  +   P + Q+T  CK++L E+A KMN  +P+Y   +  + L  F+ 
Sbjct: 95  AEVALMEIVKSIPANANIPAV-QETGLCKNLLQEYAQKMNYAIPSYICTKPASGLAPFLC 153

Query: 120 SLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTS-GSATILSEIIKSKGK 170
           ++   G+ Y G   R+KK+AE  AAR  +  +   S GSA   ++ I   GK
Sbjct: 154 TVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQSEGSANGATKYIVVPGK 205

Binds double-stranded RNA.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O04492|DRB1_ARATH Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana GN=DRB1 PE=1 SV=1

 Score =  105 bits (261), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 60/153 (39%), Positives = 91/153 (59%), Gaps = 7/153 (4%)

Query: 1   MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 60
           + K+RLQE+AQ+  +P PVY+   EG  H   F+++V +DGV Y S   F +RKAAEQ  
Sbjct: 15  VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSA 74

Query: 61  AKIALECISKKIKDEGCPLINQ---DTVFCKSILNEFAVKMNLELPAYSTRQSEALLPV- 116
           A++AL  ++K  +   C  ++Q   +T  CK++L E+A KMN  +P Y  ++ E L  V 
Sbjct: 75  AEVALRELAKSSELSQC--VSQPVHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVT 132

Query: 117 -FVSSLVFNGVTYTGEPGRSKKEAEQLAARAVI 148
            F  ++   G+ YTG   R+KK+AE  A R  +
Sbjct: 133 QFTCTVEIGGIKYTGAATRTKKDAEISAGRTAL 165

Double-stranded RNA-binding protein involved in RNA-mediated post-transcriptional gene silencing (PTGS). Functions in the microRNAs (miRNAs) biogenesis by assisting DICER-LIKE 1 (DCL1) in the accurate processing from primary miRNAs (pri-miRNAs) to miRNAs in the nucleus. Forms a complex with SERRATE (SE) and DCL1 to promote accurate processing of pri-miRNAs by DCL1. Binds and assist DCL1 for accurate processing of precursor miRNAs (pre-miRNA). Indirectly involved in the production of trans-acting small interfering RNAs (ta-siRNAs) derived from the TAS1, TAS2 or TAS3 endogenous transcripts by participating in the production of their initiating miRNAs. Involved with argonaute 1 (AGO1) in the guide strand selection from miRNA duplexes, presumably by directional loading of the miRNA duplex (guide stand and passenger strand) onto the RNA-induced silencing complex (RISC) for passenger strand degradation. Does not participate in sense transgene-induced post-transcriptional gene silencing (S-PTGS). Involved in several plant development aspects and response to hormones through its role in miRNAs processing.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0DKP4|DRB2_ORYSJ Double-stranded RNA-binding protein 2 OS=Oryza sativa subsp. japonica GN=DRB2 PE=2 SV=1

 Score =  101 bits (251), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/153 (39%), Positives = 89/153 (58%), Gaps = 2/153 (1%)

Query: 1   MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 60
           M+KN+LQE AQRS   LP Y    EG  HAP+F+A+V+ +G T+ SP   S  + AE   
Sbjct: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAA 60

Query: 61  AKIALECISKKIKDEGCPL-INQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVFV 118
           A++AL  +SK+         +  +T   K++L E A +  L+LP Y+T R      PVF 
Sbjct: 61  AEVALNELSKRGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPVYTTIRSGPGHTPVFT 120

Query: 119 SSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 151
            ++   G+T+TG PG++KK+A++ AA A    L
Sbjct: 121 CTVELAGMTFTGNPGKTKKQAQKNAAMAAWSEL 153

Binds double-stranded RNA.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SKN2|DRB2_ARATH Double-stranded RNA-binding protein 2 OS=Arabidopsis thaliana GN=DRB2 PE=1 SV=1

 Score = 99.0 bits (245), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/153 (37%), Positives = 87/153 (56%), Gaps = 2/153 (1%)

Query: 1   MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 60
           M+KN+LQE AQRS   LP Y    EG  HAP+F+A+V+ +G  + SP   S  + AE   
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60

Query: 61  AKIALECISKKIKDEG-CPLINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVFV 118
           A++AL  +S +         I  +T   K++L E A ++   LP Y+T R      PVF 
Sbjct: 61  AEVALNALSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFT 120

Query: 119 SSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 151
            ++   G+T+TG+P ++KK+AE+ AA A   +L
Sbjct: 121 GTVELAGITFTGDPAKNKKQAEKNAAMAAWSSL 153

Binds double-stranded RNA. May be involved in RNA-mediated silencing.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GY79|DRB5_ARATH Double-stranded RNA-binding protein 5 OS=Arabidopsis thaliana GN=DRB5 PE=1 SV=1

 Score = 95.5 bits (236), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 57/154 (37%), Positives = 90/154 (58%), Gaps = 4/154 (2%)

Query: 1   MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 60
           M+KN+LQE AQRS   LP Y    EG  HAP+F+ASV+ +G  + SP   S  + AE   
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60

Query: 61  AKIALECISKKI--KDEGCPLINQDTVFCKSILNEFAVKMNLELPAY-STRQSEALLPVF 117
           A+++L  +S ++  K     ++++  ++ K++L E A +  L+LP Y S R      P F
Sbjct: 61  AEVSLNVLSSRVPSKSLTAKILDETGIY-KNLLQETAHRAGLDLPMYTSVRSGSCHFPGF 119

Query: 118 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 151
             ++   G+T+TGE  ++KK+AE+ AA A   +L
Sbjct: 120 SCTVELAGMTFTGESAKTKKQAEKNAAIAAWSSL 153

Binds double-stranded RNA. May be involved in RNA-mediated silencing.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJF5|DRB3_ARATH Double-stranded RNA-binding protein 3 OS=Arabidopsis thaliana GN=DRB3 PE=2 SV=1

 Score = 93.6 bits (231), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/154 (37%), Positives = 89/154 (57%), Gaps = 4/154 (2%)

Query: 1   MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 60
           M+KN+LQE AQRS   LP Y    EG  HAP+F+ASV+ +G  + SP   S  + AE   
Sbjct: 1   MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60

Query: 61  AKIALECISKK--IKDEGCPLINQDTVFCKSILNEFAVKMNLELPAY-STRQSEALLPVF 117
           A++AL  +S K   K     ++++  ++ K++L E A +  L+LP Y S R     +P F
Sbjct: 61  AEVALSALSSKGPSKSLTARVLDETGIY-KNLLQETAHRAGLDLPVYTSVRSGPGHIPTF 119

Query: 118 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 151
             ++   G+++ GE  ++KK+AE+ AA A   +L
Sbjct: 120 SCTVELAGMSFNGESAKTKKQAEKNAAIAAWFSL 153

Binds double-stranded RNA.

Arabidopsis thaliana (taxid: 3702)

>sp|B7E321|DRB5_ORYSJ Double-stranded RNA-binding protein 5 OS=Oryza sativa subsp. japonica GN=DRB5 PE=2 SV=1

 Score = 92.4 bits (228), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 56/154 (36%), Positives = 91/154 (59%), Gaps = 4/154 (2%)

Query: 1   MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 60
           M+KN+LQE AQRS   LP Y    EG  HAP+F+A+V+ +G T+  P+  +  + AE   
Sbjct: 1   MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 60

Query: 61  AKIALECISKKIKDEGCP--LINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVF 117
           A++AL  +S +         ++++  V+ K++L E A +  L+LP Y+T R      PVF
Sbjct: 61  AEVALARLSLRGPSSSLTARVLDETGVY-KNLLQETAHRAGLKLPVYTTVRSGPGHSPVF 119

Query: 118 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 151
            S++   G+++ G+P ++KK AE+ AA A   +L
Sbjct: 120 SSTVELAGMSFAGDPAKTKKHAEKNAAMAAWSSL 153

Binds double-stranded RNA.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	348
359488195	333	PREDICTED: double-stranded RNA-binding p	0.882	0.921	0.555	3e-85
224069354	452	predicted protein [Populus trichocarpa]	0.522	0.402	0.659	9e-67
255583419	289	double-stranded RNA binding protein, put	0.790	0.951	0.457	9e-58
356551805	434	PREDICTED: uncharacterized protein LOC10	0.502	0.403	0.542	3e-49
449464150	385	PREDICTED: uncharacterized protein LOC10	0.528	0.477	0.497	1e-44
449502333	385	PREDICTED: uncharacterized LOC101213863	0.528	0.477	0.497	1e-44
357492171	357	hypothetical protein MTR_5g079490 [Medic	0.494	0.481	0.465	4e-40
242081359	298	hypothetical protein SORBIDRAFT_07g01938	0.497	0.580	0.477	4e-36
357141254	281	PREDICTED: double-stranded RNA-binding p	0.494	0.612	0.472	3e-35
212276238	323	uncharacterized protein LOC100191297 [Ze	0.497	0.535	0.427	7e-29

>gi|359488195|ref|XP_002272597.2| PREDICTED: double-stranded RNA-binding protein 4-like [Vitis vinifera] gi|296087161|emb|CBI33535.3| unnamed protein product [Vitis vinifera]

 Score =  321 bits (823), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 196/353 (55%), Positives = 233/353 (66%), Gaps = 46/353 (13%)

Query: 1   MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 60
           MHKNRLQE+ QRS IPLP+YQ+ NEGFQHAPKFR++V VDG TYTSPNTFSHRKAAEQDV
Sbjct: 22  MHKNRLQEYTQRSAIPLPIYQTVNEGFQHAPKFRSTVLVDGATYTSPNTFSHRKAAEQDV 81

Query: 61  AKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSS 120
           A++ALE ISKKIKDEGCPLI +DTVFCKSILNEFAVKMNLE P Y+T Q E LLPVFVSS
Sbjct: 82  ARLALEFISKKIKDEGCPLIREDTVFCKSILNEFAVKMNLEKPTYTTVQPEGLLPVFVSS 141

Query: 121 LVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSEIIKSKGKLYAALNKVKE 180
           LVFNGVTYTG+ GR+KKEAEQLAAR VI ++L  SGS T+LSEIIKSK KLYAAL++VK+
Sbjct: 142 LVFNGVTYTGDAGRNKKEAEQLAARTVILSILGNSGSGTLLSEIIKSKVKLYAALHRVKD 201

Query: 181 SNYSTQKIATSYVPTTAIPKSSSGIHPIPTTPEASVGMHSIPTIPEATAGIHPTPA---- 236
            +Y                   +GI PI        G+         T+GI P       
Sbjct: 202 PSY-----------------IHTGILPI--------GL---------TSGIPPCKGKEVE 227

Query: 237 ITEASTGMHPTSAAIEVSTGMHSTAADSETSTGMNLPCHPFKKPKLEPPSEPVVLPIPFV 296
           +   +  + PT+ ++ +S  +             + P H  +KPK    SE +  PI FV
Sbjct: 228 VAPGTDQLLPTAVSVPLSGQLVHVPV-------THPPVHELEKPKPNVSSEVIAPPISFV 280

Query: 297 PPVLGQ-HSEGGSSSTNKRRKNKRKANKKLRTDAQPCVSAQPLTQVPPCSVAQ 348
           P V  Q      ++   + RKNK+KANKKLRTDAQ  V+  PL Q  PCSVAQ
Sbjct: 281 PSVFEQPLVVSPTTGRKRNRKNKKKANKKLRTDAQLPVAVLPLNQASPCSVAQ 333

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069354|ref|XP_002302963.1| predicted protein [Populus trichocarpa] gi|222844689|gb|EEE82236.1| predicted protein [Populus trichocarpa]

 Score =  259 bits (663), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 124/188 (65%), Positives = 152/188 (80%)

Query: 1   MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 60
           M+KNRLQE+ Q+S + LPVYQ+ NEG  H P+FR++V VDG  Y S  TF HRKAAEQDV
Sbjct: 139 MYKNRLQEYTQKSSLQLPVYQTLNEGPAHMPRFRSTVWVDGARYRSQKTFLHRKAAEQDV 198

Query: 61  AKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSS 120
           A +ALE I K++KDEGCPL+  DTVFCKSILNEFAVK+N E P Y+T QS  LLPVF+S+
Sbjct: 199 ANLALESILKRVKDEGCPLLLGDTVFCKSILNEFAVKVNREKPTYNTVQSPGLLPVFIST 258

Query: 121 LVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSEIIKSKGKLYAALNKVKE 180
           LVF+GV+YTG+ GR+KKEAEQLAARAVI +L+  SGS+ IL EIIKSK KLYAAL++VK+
Sbjct: 259 LVFDGVSYTGDAGRNKKEAEQLAARAVILSLIGNSGSSKILYEIIKSKSKLYAALDRVKD 318

Query: 181 SNYSTQKI 188
            ++S   I
Sbjct: 319 PSHSQPNI 326

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583419|ref|XP_002532469.1| double-stranded RNA binding protein, putative [Ricinus communis] gi|223527827|gb|EEF29925.1| double-stranded RNA binding protein, putative [Ricinus communis]

 Score =  230 bits (586), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 152/332 (45%), Positives = 190/332 (57%), Gaps = 57/332 (17%)

Query: 1   MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 60
           M+KNRLQE+ QR  + LP+YQ+ NEG+ H PKFR++V VDG  YTS NTFSHRK AEQDV
Sbjct: 13  MYKNRLQEYTQRQSLQLPIYQTVNEGYPHDPKFRSTVLVDGEEYTSHNTFSHRKEAEQDV 72

Query: 61  AKIALECISKKIKDE--GCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFV 118
           AK+AL  I++KIKDE       ++DTV CKSILNE+AVKM LE+P Y+T +   L P+FV
Sbjct: 73  AKLALTSITEKIKDEIKDEKFTHEDTVACKSILNEYAVKMQLEMPTYNTVKQGGLFPIFV 132

Query: 119 SSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSEIIKSKGKLYAALNKV 178
           SS VFNGVTY G+ GR+KKEAEQLAARA + +LL    S  I+S+  KSK KLY   +K 
Sbjct: 133 SSSVFNGVTYNGDIGRTKKEAEQLAARAAVLSLLRNVESGEIISKFFKSKRKLYVGFHKS 192

Query: 179 KESNYSTQKIATSYVPTTAIPKSSSGIHPIPTTPEASVGMHSIPTIPEATAGIHPTPAIT 238
                 +Q    S +P             I T  EA +  + +P IPEA + +HP     
Sbjct: 193 -----DSQDAQNSNMPVVG--------KDIKT--EALMVSNVVP-IPEAASALHP----- 231

Query: 239 EASTGMHPTSAAIEVSTGMHSTAADSETSTGMNLPCHPFKKPKLEPPSEPVVLPIPFVPP 298
                                             P H F K K E   E + LPI FV P
Sbjct: 232 ----------------------------------PHHEFTKTKPEKICEGIDLPIAFVHP 257

Query: 299 VLGQHSEGGSSSTNKRRKNKRKANKKLRTDAQ 330
           V GQ  +    S  KRRKNK+K NKKLR+++Q
Sbjct: 258 VSGQSVDVALESGKKRRKNKKKPNKKLRSESQ 289

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551805|ref|XP_003544264.1| PREDICTED: uncharacterized protein LOC100798730 [Glycine max]

 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 96/177 (54%), Positives = 132/177 (74%), Gaps = 2/177 (1%)

Query: 1   MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 60
           M+KNRLQE   +SGI  PVYQ+ NEG  H+PKFR++V V  + YTS +TFSH+KAAE + 
Sbjct: 1   MYKNRLQEFTSKSGINFPVYQTINEGQDHSPKFRSTVWVADMGYTSQSTFSHKKAAEHEA 60

Query: 61  AKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSE--ALLPVFV 118
           A++ALE I K+ +DEG  L+NQ + F KSI+NE+A K+++E P Y+T Q +   +LP+F+
Sbjct: 61  ARLALESILKRTRDEGLSLVNQISPFSKSIMNEYADKLHVEQPTYNTDQQQLGGVLPIFI 120

Query: 119 SSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSEIIKSKGKLYAAL 175
           +SLVFNG +YTG+P R+KKEAEQ AA+A I +++  S S T+L EIIKSK   Y A+
Sbjct: 121 TSLVFNGTSYTGDPARTKKEAEQSAAKAAILSIMGDSSSGTVLVEIIKSKSIFYDAI 177

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464150|ref|XP_004149792.1| PREDICTED: uncharacterized protein LOC101213863 [Cucumis sativus]

 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 93/187 (49%), Positives = 129/187 (68%), Gaps = 3/187 (1%)

Query: 1   MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 60
           ++KN L E+ Q++ I +PVYQ+ +EG    PK+R++V VD V Y SPNTF +R+AAEQD 
Sbjct: 77  VYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDA 136

Query: 61  AKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSS 120
           A++A E ISKK KD+   L+ +D + CKSIL+E+  KM LE P Y+T+ ++  +  F S+
Sbjct: 137 ARVAFEYISKKTKDDAFLLLREDLMLCKSILSEYTDKMGLERPIYTTKHNQGSVAFFQST 196

Query: 121 LVFNGVTYTGEPGRSKKEAEQLAARAVIRTL---LVTSGSATILSEIIKSKGKLYAALNK 177
           LVF+GV YT + GR+KKEAEQLAARA I +L        S   L +II SK + +A L K
Sbjct: 197 LVFDGVVYTSDLGRTKKEAEQLAARAAILSLHEDATNPKSQKALGDIIASKVRFHAMLQK 256

Query: 178 VKESNYS 184
           VK+SN+S
Sbjct: 257 VKDSNFS 263

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449502333|ref|XP_004161611.1| PREDICTED: uncharacterized LOC101213863 [Cucumis sativus]

 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 93/187 (49%), Positives = 129/187 (68%), Gaps = 3/187 (1%)

Query: 1   MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 60
           ++KN L E+ Q++ I +PVYQ+ +EG    PK+R++V VD V Y SPNTF +R+AAEQD 
Sbjct: 77  VYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDA 136

Query: 61  AKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSS 120
           A++A E ISKK KD+   L+ +D + CKSIL+E+  KM LE P Y+T+ ++  +  F S+
Sbjct: 137 ARVAFEYISKKTKDDAFLLLREDLMLCKSILSEYTDKMGLERPIYTTKHNQGSVAFFQST 196

Query: 121 LVFNGVTYTGEPGRSKKEAEQLAARAVIRTL---LVTSGSATILSEIIKSKGKLYAALNK 177
           LVF+GV YT + GR+KKEAEQLAARA I +L        S   L +II SK + +A L K
Sbjct: 197 LVFDGVVYTSDLGRTKKEAEQLAARAAILSLHEDATNPKSQKALGDIIASKVRFHAMLQK 256

Query: 178 VKESNYS 184
           VK+SN+S
Sbjct: 257 VKDSNFS 263

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357492171|ref|XP_003616374.1| hypothetical protein MTR_5g079490 [Medicago truncatula] gi|355517709|gb|AES99332.1| hypothetical protein MTR_5g079490 [Medicago truncatula]

 Score =  171 bits (433), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 80/172 (46%), Positives = 121/172 (70%)

Query: 1   MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 60
           M KN L + A +S +  P + S NEG   AP +R+SV VDG+ +TS  TF HRKAAEQ+V
Sbjct: 27  MFKNNLIQFALKSNMKHPEFFSRNEGSIQAPAYRSSVMVDGLVFTSQLTFFHRKAAEQEV 86

Query: 61  AKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSS 120
           A+ ALE ++KK+KDE   ++++   FCK++LNE+A K++++LP Y + + + ++P FV +
Sbjct: 87  ARFALEYLTKKVKDEAYSIMSEAVTFCKTVLNEYASKLSIQLPTYKSVEYKEVIPYFVCT 146

Query: 121 LVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSEIIKSKGKLY 172
           L  NG +YTG+  R KK+A +LAARA I ++L  S S  +L++IIK+K KL+
Sbjct: 147 LDLNGTSYTGDAARRKKDAVELAARAAILSILGNSNSGVLLAQIIKTKAKLF 198

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242081359|ref|XP_002445448.1| hypothetical protein SORBIDRAFT_07g019380 [Sorghum bicolor] gi|241941798|gb|EES14943.1| hypothetical protein SORBIDRAFT_07g019380 [Sorghum bicolor]

 Score =  158 bits (399), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 85/178 (47%), Positives = 114/178 (64%), Gaps = 5/178 (2%)

Query: 1   MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 60
           MHKNRLQ  A+R+    PVY+  +EG  H PKFR +V V G  ++S  +F  +K AEQD 
Sbjct: 47  MHKNRLQSFAERTYKKPPVYKVESEGASHQPKFRCTVEVGGQQFSSAGSFDRKKEAEQDA 106

Query: 61  AKIALECISKKIKD---EGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVF 117
           A+IA E +S   +D   E   LI+QD VFCKSILNEFAVK     P+YS    E  L +F
Sbjct: 107 ARIAYEILSAVGEDDIKEAFGLIDQDAVFCKSILNEFAVKTKTTWPSYSLVYIEKPLTLF 166

Query: 118 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSEIIKSKGKLYAAL 175
            + +VF+G +YTGE  R+KK+AEQ AARAVI+++L      T +  I++SK +L  A+
Sbjct: 167 AAIVVFDGNSYTGESARNKKDAEQNAARAVIKSILAKHN--TCMVGIVRSKKQLITAV 222

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357141254|ref|XP_003572154.1| PREDICTED: double-stranded RNA-binding protein 4-like [Brachypodium distachyon]

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 86/182 (47%), Positives = 114/182 (62%), Gaps = 10/182 (5%)

Query: 2   HKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 61
           +KNRLQE AQR+   LPVY +  +G  H P+FR++V V G  ++S  T    K AEQD A
Sbjct: 30  YKNRLQELAQRAHQKLPVYLTEKKGDHHQPEFRSTVEVWGDQFSSARTHGRIKDAEQDAA 89

Query: 62  KIALECISKKIKDEGCP------LINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLP 115
           ++A E +  KI D          LI+QD +FCKSILNEFAVK     P YS  + + + P
Sbjct: 90  RVAYEILVAKIMDADADVTDILGLIDQDVLFCKSILNEFAVKTKATQPKYSVDRPQGVSP 149

Query: 116 V--FVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSEIIKSKGKLYA 173
           +  FVSS+VF+G TYTGE   SKK+AEQ AARA ++++L T    T + +IIKSK  L  
Sbjct: 150 ISLFVSSVVFDGKTYTGEAAVSKKDAEQKAARAAVKSILATKN--TCMMQIIKSKENLIT 207

Query: 174 AL 175
           A+
Sbjct: 208 AI 209

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|212276238|ref|NP_001130203.1| uncharacterized protein LOC100191297 [Zea mays] gi|194688536|gb|ACF78352.1| unknown [Zea mays] gi|414870581|tpg|DAA49138.1| TPA: hypothetical protein ZEAMMB73_523306 [Zea mays]

 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 77/180 (42%), Positives = 108/180 (60%), Gaps = 7/180 (3%)

Query: 1   MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 60
           MHKNRLQ  A+R+    P+Y+  +EG  H PKF  +V V    ++S  +FS +K AEQD 
Sbjct: 58  MHKNRLQSFAERTYKKTPIYKVESEGQSHQPKFTCTVEVGDQQFSSTGSFSRKKEAEQDA 117

Query: 61  AKIALEC---ISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQS--EALLP 115
           A++A E    +S+    E   LI+QD VFCKSIL EFAVK    LP+YS      +  L 
Sbjct: 118 ARVAYEILTTVSESDVKEAFELIDQDAVFCKSILIEFAVKTKTTLPSYSVVCVCLKKPLT 177

Query: 116 VFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSEIIKSKGKLYAAL 175
           +F + +VF+G  Y GE   +KK+AEQ AAR VI+++L      T +  I++SK +L  A+
Sbjct: 178 LFAAIVVFDGNAYHGESAPNKKDAEQNAARVVIKSILAKHD--TCMVRIVRSKKQLITAV 235

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	348
UNIPROTKB|Q0IQN6	424	DRB8 "Double-stranded RNA-bind	0.477	0.391	0.385	1.8e-27
TAIR|locus:2829928	359	DRB3 "dsRNA-binding protein 3"	0.419	0.406	0.378	1.6e-22
TAIR|locus:2024407	419	HYL1 "HYPONASTIC LEAVES 1" [Ar	0.413	0.343	0.397	7e-22
TAIR|locus:2057491	434	DRB2 "dsRNA-binding protein 2"	0.770	0.617	0.300	5.2e-21
TAIR|locus:2163016	393	DRB5 "dsRNA-binding protein 5"	0.433	0.384	0.379	4.2e-20
TAIR|locus:2081620	355	DRB4 "double-stranded-RNA-bind	0.695	0.681	0.277	6.9e-16
CGD|CAL0004775	1409	MSB2 [Candida albicans (taxid:	0.359	0.088	0.320	0.00039
UNIPROTKB|Q5ALT5	1409	MSB2 "Potential cell surface f	0.359	0.088	0.320	0.00039

UNIPROTKB|Q0IQN6 DRB8 "Double-stranded RNA-binding protein 8" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 281 (104.0 bits), Expect = 1.8e-27, Sum P(2) = 1.8e-27
 Identities = 66/171 (38%), Positives = 101/171 (59%)

Query:     3 KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAK 62
             K+RLQE+AQ++G+  P Y +  EG  H P F+++V ++  +Y S   F +RKAAEQ  A+
Sbjct:    35 KSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAAE 94

Query:    63 IALECISKKIK-DEGCPLINQDTVFCKSILNEFAVKMNLELPAY-STRQSEALLPVFVSS 120
             +AL  I K I  +   P + Q+T  CK++L E+A KMN  +P+Y  T+ +  L P F+ +
Sbjct:    95 VALMEIVKSIPANANIPAV-QETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAP-FICT 152

Query:   121 LVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTS-GSATILSEIIKSKGK 170
             +   G+ Y G   R+KK+AE  AAR  +  +   S GSA   ++ I   GK
Sbjct:   153 VEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQSEGSANGATKYIVVPGK 203

GO:0003725 "double-stranded RNA binding" evidence=IDA

TAIR|locus:2829928 DRB3 "dsRNA-binding protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 239 (89.2 bits), Expect = 1.6e-22, Sum P(2) = 1.6e-22
 Identities = 56/148 (37%), Positives = 84/148 (56%)

Query:     1 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 60
             M+KN+LQE AQRS   LP Y    EG  HAP+F+ASV+ +G  + SP   S  + AE   
Sbjct:     1 MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60

Query:    61 AKIALECISKKIKDEGCPL-INQDTVFCKSILNEFAVKMNLELPAY-STRQSEALLPVFV 118
             A++AL  +S K   +     +  +T   K++L E A +  L+LP Y S R     +P F 
Sbjct:    61 AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120

Query:   119 SSLVFNGVTYTGEPGRSKKEAEQLAARA 146
              ++   G+++ GE  ++KK+AE+ AA A
Sbjct:   121 CTVELAGMSFNGESAKTKKQAEKNAAIA 148

GO:0003723 "RNA binding" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0051607 "defense response to virus" evidence=RCA

TAIR|locus:2024407 HYL1 "HYPONASTIC LEAVES 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 60/151 (39%), Positives = 90/151 (59%)

Query:     3 KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAK 62
             K+RLQE+AQ+  +P PVY+   EG  H   F+++V +DGV Y S   F +RKAAEQ  A+
Sbjct:    17 KSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAE 76

Query:    63 IALECISKKIKDEGCPLINQ---DTVFCKSILNEFAVKMNLELPAYSTRQSEALLPV--F 117
             +AL  ++K  +   C  ++Q   +T  CK++L E+A KMN  +P Y  ++ E L  V  F
Sbjct:    77 VALRELAKSSELSQC--VSQPVHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQF 134

Query:   118 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVI 148
               ++   G+ YTG   R+KK+AE  A R  +
Sbjct:   135 TCTVEIGGIKYTGAATRTKKDAEISAGRTAL 165

GO:0003723 "RNA binding" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA;IDA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005634 "nucleus" evidence=IDA

GO:0009733 "response to auxin stimulus" evidence=IMP

GO:0009735 "response to cytokinin stimulus" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0035279 "mRNA cleavage involved in gene silencing by miRNA" evidence=IMP

GO:0031054 "pre-miRNA processing" evidence=IMP

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA;IMP

GO:0015030 "Cajal body" evidence=IDA

GO:0035198 "miRNA binding" evidence=IDA

GO:0010445 "nuclear dicing body" evidence=IDA

GO:0051607 "defense response to virus" evidence=RCA

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0010589 "leaf proximal/distal pattern formation" evidence=IMP

TAIR|locus:2057491 DRB2 "dsRNA-binding protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 5.2e-21, P = 5.2e-21
 Identities = 88/293 (30%), Positives = 138/293 (47%)

Query:     1 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 60
             M+KN+LQE AQRS   LP Y    EG  HAP+F+A+V+ +G  + SP   S  + AE   
Sbjct:     1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60

Query:    61 AKIALECISKKIKDEGCPL-INQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVFV 118
             A++AL  +S +         I  +T   K++L E A ++   LP Y+T R      PVF 
Sbjct:    61 AEVALNALSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFT 120

Query:   119 SSLVFNGVTYTGEPGRSKKEAEQLAARAV---IRTLLVTSGSATILSEIIKSKGKLYAA- 174
              ++   G+T+TG+P ++KK+AE+ AA A    ++ L   + S+    E I    ++  A 
Sbjct:   121 GTVELAGITFTGDPAKNKKQAEKNAAMAAWSSLKQLAKETSSSMPEPENIDELEQVIIAR 180

Query:   175 --LN-KVKESNYSTQKIATSYVPTTAIPKSSSGIHPIPTTPEASVGMHSIPTIPEATAGI 231
               +N ++KE N  T   +++ VP     K     +  PT+P+ S         P  T+ I
Sbjct:   181 ALINYRIKE-NIGTGSSSSAPVP---FAKKFFMQNLRPTSPQPS---------PATTSRI 227

Query:   232 HPTPAITEASTGMHPTSAAIEVSTGMHSTAADSETSTGMNLPCHPFKKPKLEP 284
              P     + S     + AA   ++G+    A +  S     P   F  P   P
Sbjct:   228 LPFICPKQPSRSSRSSLAA---TSGIDRIMAAALESRSYQRPQQRFANPPYVP 277

GO:0003723 "RNA binding" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS;IDA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA;IMP

GO:0070919 "production of siRNA involved in chromatin silencing by small RNA" evidence=IMP

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0051607 "defense response to virus" evidence=RCA

TAIR|locus:2163016 DRB5 "dsRNA-binding protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 4.2e-20, P = 4.2e-20
 Identities = 58/153 (37%), Positives = 87/153 (56%)

Query:     1 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 60
             M+KN+LQE AQRS   LP Y    EG  HAP+F+ASV+ +G  + SP   S  + AE   
Sbjct:     1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60

Query:    61 AKIALECISKKIKDEGCPL-INQDTVFCKSILNEFAVKMNLELPAY-STRQSEALLPVFV 118
             A+++L  +S ++  +     I  +T   K++L E A +  L+LP Y S R      P F 
Sbjct:    61 AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFS 120

Query:   119 SSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 151
              ++   G+T+TGE  ++KK+AE+ AA A   +L
Sbjct:   121 CTVELAGMTFTGESAKTKKQAEKNAAIAAWSSL 153

GO:0003723 "RNA binding" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS;IDA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0051607 "defense response to virus" evidence=RCA

TAIR|locus:2081620 DRB4 "double-stranded-RNA-binding protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 6.9e-16, P = 6.9e-16
 Identities = 73/263 (27%), Positives = 125/263 (47%)

Query:     1 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 60
             ++K +LQ +A +  + LPVY +  EG  HAP+FR +V+  G T+ S   F   K+AE   
Sbjct:     4 VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63

Query:    61 AKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQS-EALLPVFVS 119
             AKIA+  ++ +   EG      D  + K++L E A K +  LP Y+T  S  +  P F S
Sbjct:    64 AKIAVASLTPQ-SPEGI-----DVAY-KNLLQEIAQKESSLLPFYATATSGPSHAPTFTS 116

Query:   120 SLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLV----TSGSATILSEIIKSKGKLYAAL 175
             ++ F G  ++GE  ++KK AE  AA+    ++       +GS T+ SE  +       + 
Sbjct:   117 TVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIKNGNSNQTGSPTLPSERQEDVNSNVKSS 176

Query:   176 NKVKESNYSTQKIATSYVPTTAIPKSSS---GIHPIPTT--PEASVGMHSIPTIPEATAG 230
              +   S  S++ + T   P+  I  +      +H  P +   E +V ++     PE    
Sbjct:   177 PQEIHSQPSSKVVMTPDTPSKGIKVNEDEFPDLHDAPASNAKEINVALNE----PENPTN 232

Query:   231 IHPTPAITEASTGMHPTSAAIEV 253
                  A+T     M+  S+++ +
Sbjct:   233 DGTLSALTTDGMKMNIASSSLPI 255

GO:0003723 "RNA binding" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS;IDA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA;IMP

GO:0060145 "viral gene silencing in virus induced gene silencing" evidence=IMP

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA;IMP

GO:0070919 "production of siRNA involved in chromatin silencing by small RNA" evidence=IMP

GO:0051607 "defense response to virus" evidence=RCA

CGD|CAL0004775 MSB2 [Candida albicans (taxid:5476)]

 Score = 123 (48.4 bits), Expect = 0.00039, P = 0.00039
 Identities = 42/131 (32%), Positives = 60/131 (45%)

Query:   139 AEQLAARAVIRTLLVTSGSATILSEIIKSKGKLYAALNKVKESNYSTQKIATSYVPTTAI 198
             +EQ      + T   T   AT+ S + +S+    +A+  V ES+   Q  AT+   TTA 
Sbjct:   899 SEQSGVETALSTQPTTGTEATVTSGVSQSEQTGTSAVTGVTESSEQIQSGATTPATTTA- 957

Query:   199 PKSSSGIHPIPTTPEASVGMHSIPTIP-EATAGIHPTPAITEASTGMHPTSAAIEVSTGM 257
                 S    +    EAS    +  T   EAT G   T A +EA+T    T+AA E +T  
Sbjct:   958 ----SDATAVTNASEASAESQATTTAASEATTGSQVTTAASEAATESQATTAASEAATES 1013

Query:   258 HSTAADSETST 268
              +T A SE +T
Sbjct:  1014 QATTAASEAAT 1024

GO:0031505 "fungal-type cell wall organization" evidence=IMP

GO:0005576 "extracellular region" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0030427 "site of polarized growth" evidence=IEA

GO:0030447 "filamentous growth" evidence=IMP

GO:0044182 "filamentous growth of a population of unicellular organisms" evidence=IMP

GO:1900430 "positive regulation of filamentous growth of a population of unicellular organisms" evidence=IMP

GO:0009986 "cell surface" evidence=IDA

GO:0043410 "positive regulation of MAPK cascade" evidence=IMP

GO:1900233 "positive regulation of single-species biofilm formation on inanimate substrate" evidence=IMP

GO:0030010 "establishment of cell polarity" evidence=IEA

GO:0006972 "hyperosmotic response" evidence=IEA

GO:0001402 "signal transduction involved in filamentous growth" evidence=IEA

GO:0007232 "osmosensory signaling pathway via Sho1 osmosensor" evidence=IEA

GO:0005034 "osmosensor activity" evidence=IEA

UNIPROTKB|Q5ALT5 MSB2 "Potential cell surface flocculin" [Candida albicans SC5314 (taxid:237561)]

 Score = 123 (48.4 bits), Expect = 0.00039, P = 0.00039
 Identities = 42/131 (32%), Positives = 60/131 (45%)

Query:   139 AEQLAARAVIRTLLVTSGSATILSEIIKSKGKLYAALNKVKESNYSTQKIATSYVPTTAI 198
             +EQ      + T   T   AT+ S + +S+    +A+  V ES+   Q  AT+   TTA 
Sbjct:   899 SEQSGVETALSTQPTTGTEATVTSGVSQSEQTGTSAVTGVTESSEQIQSGATTPATTTA- 957

Query:   199 PKSSSGIHPIPTTPEASVGMHSIPTIP-EATAGIHPTPAITEASTGMHPTSAAIEVSTGM 257
                 S    +    EAS    +  T   EAT G   T A +EA+T    T+AA E +T  
Sbjct:   958 ----SDATAVTNASEASAESQATTTAASEATTGSQVTTAASEAATESQATTAASEAATES 1013

Query:   258 HSTAADSETST 268
              +T A SE +T
Sbjct:  1014 QATTAASEAAT 1024


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.311   0.125   0.355    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      348       322   0.00085  116 3  11 23  0.47    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  574 (61 KB)
  Total size of DFA:  185 KB (2106 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  30.88u 0.09s 30.97t   Elapsed:  00:00:01
  Total cpu time:  30.88u 0.09s 30.97t   Elapsed:  00:00:01
  Start:  Fri May 10 13:05:33 2013   End:  Fri May 10 13:05:34 2013

GO:0005576 "extracellular region" evidence=IDA

GO:0009986 "cell surface" evidence=IDA

GO:0030447 "filamentous growth" evidence=IMP

GO:0031505 "fungal-type cell wall organization" evidence=IMP

GO:0043410 "positive regulation of MAPK cascade" evidence=IMP

GO:0044182 "filamentous growth of a population of unicellular organisms" evidence=IMP

GO:1900233 "positive regulation of single-species biofilm formation on inanimate substrate" evidence=IMP

GO:1900430 "positive regulation of filamentous growth of a population of unicellular organisms" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	348
TIGR02191	220	TIGR02191, RNaseIII, ribonuclease III, bacterial	1e-12
cd00048	68	cd00048, DSRM, Double-stranded RNA binding motif	2e-12
pfam00035	66	pfam00035, dsrm, Double-stranded RNA binding motif	1e-11
PRK00102	229	PRK00102, rnc, ribonuclease III; Reviewed	3e-11
cd00048	68	cd00048, DSRM, Double-stranded RNA binding motif	2e-10
smart00358	67	smart00358, DSRM, Double-stranded RNA binding moti	3e-09
pfam00035	66	pfam00035, dsrm, Double-stranded RNA binding motif	9e-09
COG0571	235	COG0571, Rnc, dsRNA-specific ribonuclease [Transcr	9e-09
TIGR02191	220	TIGR02191, RNaseIII, ribonuclease III, bacterial	2e-08
PRK00102	229	PRK00102, rnc, ribonuclease III; Reviewed	6e-08
smart00358	67	smart00358, DSRM, Double-stranded RNA binding moti	7e-08
COG0571	235	COG0571, Rnc, dsRNA-specific ribonuclease [Transcr	2e-06
TIGR04238	201	TIGR04238, seadorna_dsRNA, seadornavirus double-st	0.001

>gnl|CDD|233772 TIGR02191, RNaseIII, ribonuclease III, bacterial

 Score = 65.7 bits (161), Expect = 1e-12
 Identities = 30/66 (45%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 2   HKNRLQEHAQRSGIPLPVYQ-SHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 60
           +K  LQE AQ  G PLP Y+    EG  H  +F   VSV+G  Y      S +K AEQ+ 
Sbjct: 154 YKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYGEGKGKS-KKEAEQNA 212

Query: 61  AKIALE 66
           AK ALE
Sbjct: 213 AKAALE 218

This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family [Transcription, RNA processing]. Length = 220

>gnl|CDD|238007 cd00048, DSRM, Double-stranded RNA binding motif

 Score = 61.5 bits (150), Expect = 2e-12
 Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 88  KSILNEFAVKMNLELPAYSTRQSE--ALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAAR 145
           KS+L E A K    LP Y   + E     P F   +   G       G SKKEA+Q AA 
Sbjct: 3   KSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITGEGEGSSKKEAKQNAAE 62

Query: 146 AVIRTL 151
           A +R L
Sbjct: 63  AALRKL 68

Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases. Length = 68

>gnl|CDD|215670 pfam00035, dsrm, Double-stranded RNA binding motif

 Score = 58.9 bits (143), Expect = 1e-11
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 88  KSILNEFAVKMNLELPAYSTRQSE-ALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARA 146
           KS+L E   K   + P     +      P F  ++  NG  Y    G SKKEA+QLAA  
Sbjct: 2   KSLLQELCQKKGPKPPYEYVEEEGPPHSPTFTVTVTVNGKKYGTGTGSSKKEAKQLAAEK 61

Query: 147 VIRTL 151
            ++ L
Sbjct: 62  ALQKL 66

Sequences gathered for seed by HMM_iterative_training Putative motif shared by proteins that bind to dsRNA. At least some DSRM proteins seem to bind to specific RNA targets. Exemplified by Staufen, which is involved in localisation of at least five different mRNAs in the early Drosophila embryo. Also by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA. Length = 66

>gnl|CDD|234633 PRK00102, rnc, ribonuclease III; Reviewed

 Score = 62.4 bits (153), Expect = 3e-11
 Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 3   KNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 61
           K RLQE  Q  G+PLP Y+   E G  H  +F   V+V+G         S +K AEQ  A
Sbjct: 161 KTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKELGEGTGSS-KKEAEQAAA 219

Query: 62  KIALECISKK 71
           K AL+ + +K
Sbjct: 220 KQALKKLKEK 229

Length = 229

>gnl|CDD|238007 cd00048, DSRM, Double-stranded RNA binding motif

 Score = 55.4 bits (134), Expect = 2e-10
 Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 2/65 (3%)

Query: 3  KNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 61
          K+ LQE AQ+ G PLP Y+   E G  HAP+F   V+V G         S +K A+Q+ A
Sbjct: 3  KSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITGEGEGSS-KKEAKQNAA 61

Query: 62 KIALE 66
          + AL 
Sbjct: 62 EAALR 66

Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases. Length = 68

>gnl|CDD|214634 smart00358, DSRM, Double-stranded RNA binding motif

 Score = 52.7 bits (127), Expect = 3e-09
 Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 88  KSILNEFAVKMNLELPAYST--RQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAAR 145
           KS+L E A K  L  P Y     +     P F  ++   G       G SKKEA+Q AA 
Sbjct: 2   KSLLQELAQKRKLP-PEYELVKEEGPDHAPRFTVTVKVGGKRTGEGEGSSKKEAKQRAAE 60

Query: 146 AVIRTL 151
           A +R+L
Sbjct: 61  AALRSL 66

Length = 67

>gnl|CDD|215670 pfam00035, dsrm, Double-stranded RNA binding motif

 Score = 51.2 bits (123), Expect = 9e-09
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 1/66 (1%)

Query: 3  KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAK 62
          K+ LQE  Q+ G   P      EG  H+P F  +V+V+G  Y +    S +K A+Q  A+
Sbjct: 2  KSLLQELCQKKGPKPPYEYVEEEGPPHSPTFTVTVTVNGKKYGTGTGSS-KKEAKQLAAE 60

Query: 63 IALECI 68
           AL+ +
Sbjct: 61 KALQKL 66

Sequences gathered for seed by HMM_iterative_training Putative motif shared by proteins that bind to dsRNA. At least some DSRM proteins seem to bind to specific RNA targets. Exemplified by Staufen, which is involved in localisation of at least five different mRNAs in the early Drosophila embryo. Also by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA. Length = 66

>gnl|CDD|223644 COG0571, Rnc, dsRNA-specific ribonuclease [Transcription]

 Score = 54.9 bits (133), Expect = 9e-09
 Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 3   KNRLQEHAQRSGIPLPVY-QSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 61
           K RLQE  Q  G+ LP Y     EG  H  +F   V+V G    +    S +K AEQ  A
Sbjct: 164 KTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGTGKGRS-KKEAEQAAA 222

Query: 62  KIALE 66
           + AL+
Sbjct: 223 EQALK 227

Length = 235

>gnl|CDD|233772 TIGR02191, RNaseIII, ribonuclease III, bacterial

 Score = 53.4 bits (129), Expect = 2e-08
 Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 88  KSILNEFAVKMNLELPAYST--RQSEALLPVFVSSLVFNGVTY-TGEPGRSKKEAEQLAA 144
           K+ L E+A      LP Y     +       F   +  NG  Y  G+ G+SKKEAEQ AA
Sbjct: 155 KTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYGEGK-GKSKKEAEQNAA 213

Query: 145 RAVIRTL 151
           +A +  L
Sbjct: 214 KAALEKL 220

This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family [Transcription, RNA processing]. Length = 220

>gnl|CDD|234633 PRK00102, rnc, ribonuclease III; Reviewed

 Score = 52.4 bits (127), Expect = 6e-08
 Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 88  KSILNEFAVKMNLELPAYSTRQSE--ALLPVFVSSLVFNGVTY-TGEPGRSKKEAEQLAA 144
           K+ L E      L LP Y   + E  A    F   +  NG     G  G SKKEAEQ AA
Sbjct: 161 KTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKELGEGT-GSSKKEAEQAAA 219

Query: 145 RAVIRTL 151
           +  ++ L
Sbjct: 220 KQALKKL 226

Length = 229

>gnl|CDD|214634 smart00358, DSRM, Double-stranded RNA binding motif

 Score = 48.4 bits (116), Expect = 7e-08
 Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 3  KNRLQEHAQRSGIPLPVYQS-HNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 61
          K+ LQE AQ+  +P P Y+    EG  HAP+F  +V V G         S +K A+Q  A
Sbjct: 2  KSLLQELAQKRKLP-PEYELVKEEGPDHAPRFTVTVKVGGKRTGEGEGSS-KKEAKQRAA 59

Query: 62 KIALE 66
          + AL 
Sbjct: 60 EAALR 64

Length = 67

>gnl|CDD|223644 COG0571, Rnc, dsRNA-specific ribonuclease [Transcription]

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 7/97 (7%)

Query: 58  QDVAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYST--RQSEALLP 115
           +   K  L+    ++++       +D    K+ L E      L LP Y     +  A   
Sbjct: 137 EAARKFILKLFLPRLEEIDAGDQFKDP---KTRLQELLQAQGLVLPEYRLVKEEGPAHDK 193

Query: 116 VFVSSLVFNGVTY-TGEPGRSKKEAEQLAARAVIRTL 151
            F   +   G    TG+ GRSKKEAEQ AA   ++ L
Sbjct: 194 EFTVEVAVGGKELGTGK-GRSKKEAEQAAAEQALKKL 229

Length = 235

>gnl|CDD|234517 TIGR04238, seadorna_dsRNA, seadornavirus double-stranded RNA-binding protein

 Score = 39.5 bits (92), Expect = 0.001
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 3/66 (4%)

Query: 88  KSILNEFAVKMNLELPAYSTRQSEA--LLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAAR 145
             +L E AVK  LELP Y     E     P F   L  N +        SKK+AE+LAA 
Sbjct: 3   VGMLQELAVKRGLELPVYEKVGKEGPDHAPTFTIKLTANDIEVIE-AASSKKQAEKLAAA 61

Query: 146 AVIRTL 151
            +   +
Sbjct: 62  TIYEDM 67

This protein family occurs in the seadornavirus virus group, with an N-terminal domain for binding double-stranded RNA, is designated VP12 in Banna virus, VP8 in Kadipiro virus, and VP11 in Liao ning virus. Length = 201

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	348
KOG3732	339	consensus Staufen and related double-stranded-RNA-	99.92
COG0571	235	Rnc dsRNA-specific ribonuclease [Transcription]	99.78
PRK12371	235	ribonuclease III; Reviewed	99.75
PRK14718	467	ribonuclease III; Provisional	99.73
PRK12372	413	ribonuclease III; Reviewed	99.71
cd00048	68	DSRM Double-stranded RNA binding motif. Binding is	99.62
PRK00102	229	rnc ribonuclease III; Reviewed	99.61
TIGR02191	220	RNaseIII ribonuclease III, bacterial. This family	99.6
PHA02701	183	ORF020 dsRNA-binding PKR inhibitor; Provisional	99.6
smart00358	67	DSRM Double-stranded RNA binding motif.	99.58
PF00035	67	dsrm: Double-stranded RNA binding motif; InterPro:	99.54
PHA03103	183	double-strand RNA-binding protein; Provisional	99.52
KOG4334	650	consensus Uncharacterized conserved protein, conta	99.31
smart00358	67	DSRM Double-stranded RNA binding motif.	99.25
PF14709	80	DND1_DSRM: double strand RNA binding domain from D	99.22
cd00048	68	DSRM Double-stranded RNA binding motif. Binding is	99.21
PHA02701	183	ORF020 dsRNA-binding PKR inhibitor; Provisional	99.2
PF00035	67	dsrm: Double-stranded RNA binding motif; InterPro:	99.2
KOG3732	339	consensus Staufen and related double-stranded-RNA-	99.19
KOG2777	542	consensus tRNA-specific adenosine deaminase 1 [RNA	99.17
PHA03103	183	double-strand RNA-binding protein; Provisional	99.14
PRK12371	235	ribonuclease III; Reviewed	99.02
KOG1817	533	consensus Ribonuclease [RNA processing and modific	98.99
PRK14718	467	ribonuclease III; Provisional	98.93
PRK12372	413	ribonuclease III; Reviewed	98.87
COG0571	235	Rnc dsRNA-specific ribonuclease [Transcription]	98.84
PF14709	80	DND1_DSRM: double strand RNA binding domain from D	98.81
PRK00102	229	rnc ribonuclease III; Reviewed	98.78
TIGR02191	220	RNaseIII ribonuclease III, bacterial. This family	98.65
KOG4334	650	consensus Uncharacterized conserved protein, conta	98.13
KOG3769	333	consensus Ribonuclease III domain proteins [Transl	97.77
KOG0921	1282	consensus Dosage compensation complex, subunit MLE	97.4
KOG2777	542	consensus tRNA-specific adenosine deaminase 1 [RNA	96.89
PF03368	90	Dicer_dimer: Dicer dimerisation domain; InterPro:	96.6
KOG1817	533	consensus Ribonuclease [RNA processing and modific	96.46
KOG3792	816	consensus Transcription factor NFAT, subunit NF90	96.33
KOG3769	333	consensus Ribonuclease III domain proteins [Transl	94.92
PF14954	252	LIX1: Limb expression 1	94.19
KOG2334	477	consensus tRNA-dihydrouridine synthase [Translatio	91.7
PF03368	90	Dicer_dimer: Dicer dimerisation domain; InterPro:	89.32
KOG0921	1282	consensus Dosage compensation complex, subunit MLE	88.49

>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]

Probab=99.92  E-value=9.4e-25  Score=211.86  Aligned_cols=202  Identities=23%  Similarity=0.213  Sum_probs=160.1

Q ss_pred             hHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHhhhhcCCC---
Q 018960            2 HKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKIKDEGC---   77 (348)
Q Consensus         2 yKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~~~e~~---   77 (348)
                      ++|.|+|||.++++ .+.|++++ +|+.|.+.|.++|.++.+.  ..|.|.|||.||+.||..+|..|.......+.   
T Consensus        40 ~IS~l~E~~~r~~~-~v~fevl~eeGp~H~~~fv~rvtvg~~~--a~GeG~sKK~AKh~AA~~~L~~lk~l~~l~~v~k~  116 (339)
T KOG3732|consen   40 PISLLQEYGLRRGL-TPVYEVLREEGPPHMPNFVFRVTVGEIT--ATGEGKSKKLAKHRAAEALLKELKKLPPLANVRKD  116 (339)
T ss_pred             hHHHHHHHHHHhCC-CcceeeeeccCCccCCCeEEEEEEeeeE--EecCCCchhHHHHHHHHHHHHHHhcCCCccccccC
Confidence            58999999999997 56899988 8999999999999998543  44689999999999999999999876432100   


Q ss_pred             ---------C---------CCCCCCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHH
Q 018960           78 ---------P---------LINQDTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKK  137 (348)
Q Consensus        78 ---------~---------~~~~~~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKK  137 (348)
                               +         +......||+++||||||+++|..|.|+++.+  .+|.++|+++|.+.+. ..+|.|.|||
T Consensus       117 ~~~~~~~~~~~~~~~q~~d~~~~~~~NPI~~L~e~~q~k~~k~P~yelv~E~G~~~~rEFv~q~sv~~~-~~~GkG~sKK  195 (339)
T KOG3732|consen  117 SLKFAKMKSSGVKKDQPGDPEYGQVLNPIGRLQELAQAKKWKLPEYELVQESGVPHRREFVIQCSVENF-TEEGKGPSKK  195 (339)
T ss_pred             cccccccccCCccccCCCCcccccccChHHHHHHHHHHhCCCCCceEEEeccCCCccceEEEEEEecce-eeecCCchHH
Confidence                     0         01134689999999999999999999999998  4699999999999986 4679999999


Q ss_pred             HHHHHHHHHHHHHHHhhCC-----------------------C----hhHHHHHHHhhhhHHHhh-------hcccCCcc
Q 018960          138 EAEQLAARAVIRTLLVTSG-----------------------S----ATILSEIIKSKGKLYAAL-------NKVKESNY  183 (348)
Q Consensus       138 eAKq~AA~~AL~~L~~~s~-----------------------~----~~ll~e~i~sk~~l~~~~-------~k~k~~~~  183 (348)
                      .||++||.+||+.|.....                       |    .+...++-.-+..++..+       -+..+..+
T Consensus       196 iAKRnAAeamLe~l~~~~~~~~p~~~~~~~~~p~~~~~~~~~~~s~~~s~~eel~~~k~~~~~~~~~~~~~~~~~~~~~~  275 (339)
T KOG3732|consen  196 IAKRNAAEAMLESLGFVKPNKTPENLKVSLLKPASGRALGCSDKSLDNSEGEELSRLKACLKVIFNSAGLAYIKLLSEIA  275 (339)
T ss_pred             HHHHHHHHHHHHHhccCCCCcCcccccccccccccCcCCccCccccccchhhhhhhhhhhhhhccccccccccccccccc
Confidence            9999999999999983321                       1    123334444455555432       11244668


Q ss_pred             cceeeccCccccccccCCCCCCCCCC
Q 018960          184 STQKIATSYVPTTAIPKSSSGIHPIP  209 (348)
Q Consensus       184 s~qk~~~~~~~~~~~~~~~~~~~~~~  209 (348)
                      -++.|...|..+++.  +.+|+++|+
T Consensus       276 ~e~~f~~~y~d~~~~--t~sg~~~~~  299 (339)
T KOG3732|consen  276 PENQFTVTYPDIEEL--TLSGQNQCL  299 (339)
T ss_pred             cccchheecchhHHh--hhhhHHHHH
Confidence            888999999988888  889999998

>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]

Probab=99.78  E-value=5.1e-19  Score=166.55  Aligned_cols=140  Identities=28%  Similarity=0.291  Sum_probs=120.8

Q ss_pred             HHHHHHHHHHcCCCCCceEEeccCCCCCCce-EEEEEEC------ceEEeCCCCCCchHHHHHHHHHHHHHHHHhhhhcC
Q 018960            3 KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKF-RASVSVD------GVTYTSPNTFSHRKAAEQDVAKIALECISKKIKDE   75 (348)
Q Consensus         3 KS~LqE~~QK~g~~LP~Y~lv~~Gp~H~~~F-t~SV~vD------GaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~~~e   75 (348)
                      ...|..+++.++  +..|+.++.|+...+.| +.+++.|      |++|+|+|    .+.|++++.+.+...+.....  
T Consensus        85 ~~~La~ia~~l~--l~~~l~lg~ge~~~gg~~~~silaD~~EAligAiylD~g----~~~~~~~i~~l~~~~~~~~~~--  156 (235)
T COG0571          85 EESLAEIARELG--LGDYLRLGKGEEKSGGRRRESILADAFEALIGAIYLDSG----LEAARKFILKLFLPRLEEIDA--  156 (235)
T ss_pred             HHHHHHHHHHhC--ccchhhccCChhhcCCCCchhHHHHHHHHHHHHHHHhCC----hHHHHHHHHHHHHHHHhhccc--
Confidence            467999999999  89999999999887655 4788888      89999987    799999988886666554321  


Q ss_pred             CCCCCCCCCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHh
Q 018960           76 GCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLV  153 (348)
Q Consensus        76 ~~~~~~~~~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~  153 (348)
                           .....|||+.||||||+++..+|.|+++.+  ++|++.|++.|.++|..++.|.|+|||+|||.||+.||+.|..
T Consensus       157 -----~~~~~D~Kt~LQe~~q~~~~~~p~Y~~v~~~g~~h~~~F~v~v~v~~~~~g~G~G~skk~AEq~AA~~al~~l~~  231 (235)
T COG0571         157 -----GDQFKDPKTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGTGKGRSKKEAEQAAAEQALKKLGV  231 (235)
T ss_pred             -----cccccChhHHHHHHHHhcCCCCCeEEEeeccCCCCCceEEEEEEECCeeEEEecccCHHHHHHHHHHHHHHHhcc
Confidence                 123489999999999999999999999988  4699999999999999999999999999999999999999875


Q ss_pred             hC
Q 018960          154 TS  155 (348)
Q Consensus       154 ~s  155 (348)
                      ..
T Consensus       232 ~~  233 (235)
T COG0571         232 KE  233 (235)
T ss_pred             cc
Confidence            43

>PRK12371 ribonuclease III; Reviewed

Probab=99.75  E-value=3.1e-18  Score=160.99  Aligned_cols=135  Identities=21%  Similarity=0.171  Sum_probs=107.5

Q ss_pred             HHHHHHHHHcCCCCCceEEeccCCCC-CCceEEEEEEC------ceEEeCCCCCCchHHHHHHHHHHHHHHHHhhhhcCC
Q 018960            4 NRLQEHAQRSGIPLPVYQSHNEGFQH-APKFRASVSVD------GVTYTSPNTFSHRKAAEQDVAKIALECISKKIKDEG   76 (348)
Q Consensus         4 S~LqE~~QK~g~~LP~Y~lv~~Gp~H-~~~Ft~SV~vD------GaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~~~e~   76 (348)
                      ..|..+|.++|  |+.|++.+.+... ......++..|      |++|+|+|    ...|++++-+.++..+...     
T Consensus        88 ~~La~ia~~lg--L~~~i~~~~~~~~~~~~~~~~ilad~~EAliGAiylD~G----~~~a~~~i~~~~~~~~~~~-----  156 (235)
T PRK12371         88 ETCAAIADEIG--LHDLIRTGSDVKKLTGKRLLNVRADVVEALIAAIYLDGG----LEAARPFIQRYWQKRALET-----  156 (235)
T ss_pred             HHHHHHHHHCC--cHHHhccCcchhhcCCcccchHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHHHHhcc-----
Confidence            57899999999  8889987654433 12223456666      99999987    6888888766644333221     


Q ss_pred             CCCCCCCCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHh
Q 018960           77 CPLINQDTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLV  153 (348)
Q Consensus        77 ~~~~~~~~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~  153 (348)
                          .....|||+.||||||+++...|.|+++.+  ++|.+.|+|.|.++|..++.|.|+|||+|||.||+.||+.|..
T Consensus       157 ----~~~~~d~Ks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~~~~~~~g~G~sKK~Ae~~AA~~al~~~~~  231 (235)
T PRK12371        157 ----DAARRDAKTELQEWAHAQFGVTPVYRVDSRSGPDHDPRFTVEVEVKGFAPETGEGRSKRAAEQVAAEKMLEREGV  231 (235)
T ss_pred             ----ccccCCHHHHHHHHHHhcCCCCCeEEEEEeecCCCCCeEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHhhh
Confidence                123569999999999999999999999866  5799999999999999999999999999999999999999864

>PRK14718 ribonuclease III; Provisional

Probab=99.73  E-value=1.1e-17  Score=168.69  Aligned_cols=138  Identities=21%  Similarity=0.254  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHcCCCCCceEEeccCCCCCCce-EEEEEEC------ceEEeCCCCCCchHHHHHHHHHHHHHHHHhhhhcC
Q 018960            3 KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKF-RASVSVD------GVTYTSPNTFSHRKAAEQDVAKIALECISKKIKDE   75 (348)
Q Consensus         3 KS~LqE~~QK~g~~LP~Y~lv~~Gp~H~~~F-t~SV~vD------GaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~~~e   75 (348)
                      ...|.++++++|  |..|++++.|+.....+ ..+++.|      |++|+|+|    ...++.+.-+.+...|.. ..  
T Consensus        75 netLA~IAr~LG--L~d~Lrlg~gE~~sgG~~~~sILADvFEALIGAIYLDsG----~e~a~~fI~~ll~p~i~~-~d--  145 (467)
T PRK14718         75 QQSLYEIAQALN--ISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVFLDGG----FEAAQGVIKRLYVPILDH-ID--  145 (467)
T ss_pred             hHHHHHHHHHcC--chHHHhhCCcccccCCCCChhHHHHHHHHHHHHHHHccC----HHHHHHHHHHHHHHHHhh-hc--
Confidence            467999999999  78899888776554333 4567777      99999987    577777765554333322 10  


Q ss_pred             CCCCCCCCCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCE-EeeeeecCCHHHHHHHHHHHHHHHHH
Q 018960           76 GCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGV-TYTGEPGRSKKEAEQLAARAVIRTLL  152 (348)
Q Consensus        76 ~~~~~~~~~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~-~~~~G~G~SKKeAKq~AA~~AL~~L~  152 (348)
                          ......|||+.||||||++++.+|.|.++.+  ++|++.|++.|+|+|. .++.|.|.|||+|||.||+.||+.|.
T Consensus       146 ----~~~~~kDyKS~LQE~~Qk~~~~~PeY~li~esGPdH~k~F~V~V~v~g~~~~G~G~G~SKKeAEQ~AAk~AL~kL~  221 (467)
T PRK14718        146 ----PRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDIKVSGSGASRRAAEQAAAKKALDEVT  221 (467)
T ss_pred             ----ccccccCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCCeEEEEEEECCeeeEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence                1123579999999999999999999999876  5799999999999995 45789999999999999999999997


Q ss_pred             h
Q 018960          153 V  153 (348)
Q Consensus       153 ~  153 (348)
                      .
T Consensus       222 ~  222 (467)
T PRK14718        222 A  222 (467)
T ss_pred             c
Confidence            3

>PRK12372 ribonuclease III; Reviewed

Probab=99.71  E-value=2.9e-17  Score=164.34  Aligned_cols=139  Identities=19%  Similarity=0.218  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHcCCCCCceEEeccCCCCCCc-eEEEEEEC------ceEEeCCCCCCchHHHHHHHHHHHHHHHHhhhhcC
Q 018960            3 KNRLQEHAQRSGIPLPVYQSHNEGFQHAPK-FRASVSVD------GVTYTSPNTFSHRKAAEQDVAKIALECISKKIKDE   75 (348)
Q Consensus         3 KS~LqE~~QK~g~~LP~Y~lv~~Gp~H~~~-Ft~SV~vD------GaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~~~e   75 (348)
                      .+.|.++|.+++  |..|++++.|+..... ...+++.|      |++|+|+|    ...++.+.-+.++..|....   
T Consensus        75 n~tLA~IA~~Lg--L~~~Lrlg~ge~~sgg~~~~kILADvfEALIGAIYLDsG----~e~a~~fV~~ll~p~l~~~~---  145 (413)
T PRK12372         75 QQSLYEIAQALN--ISEGLRLGEGELRSGGFRRPSILADAFEAIIGAVFLDGG----FEAAQGVIKRLYVPILDHID---  145 (413)
T ss_pred             hHHHHHHHHHcC--chHhhhcCcchhhcCCCCCccHHHHHHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHhhcc---
Confidence            468999999999  7788888877654433 34567777      99999987    67777777666444332211   


Q ss_pred             CCCCCCCCCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCE-EeeeeecCCHHHHHHHHHHHHHHHHH
Q 018960           76 GCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGV-TYTGEPGRSKKEAEQLAARAVIRTLL  152 (348)
Q Consensus        76 ~~~~~~~~~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~-~~~~G~G~SKKeAKq~AA~~AL~~L~  152 (348)
                          ......|||+.||||||++++..|+|+++.+  ++|++.|+|.|+|+|. .++.|.|.|||+|||.||+.||+.|.
T Consensus       146 ----~~~~~~D~KS~LQE~~Q~~~~~~P~Y~lv~e~Gp~h~~~F~V~V~v~g~~~~g~G~G~SKKeAEQ~AAr~AL~kL~  221 (413)
T PRK12372        146 ----PRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDVKVSGSGASRRAAEQAAAKKALDEVM  221 (413)
T ss_pred             ----cccccCCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCceEEEEEEECCeEEEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence                0123569999999999999999999999876  5799999999999985 45789999999999999999999998


Q ss_pred             hh
Q 018960          153 VT  154 (348)
Q Consensus       153 ~~  154 (348)
                      ..
T Consensus       222 ~~  223 (413)
T PRK12372        222 AA  223 (413)
T ss_pred             cc
Confidence            43

>cd00048 DSRM Double-stranded RNA binding motif

Probab=99.62  E-value=2.7e-15  Score=111.55  Aligned_cols=66  Identities=36%  Similarity=0.412  Sum_probs=60.7

Q ss_pred             ChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHH
Q 018960           86 FCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL  151 (348)
Q Consensus        86 npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L  151 (348)
                      |||+.|+||||++++..|.|+++..  ++|.+.|.|.|.|+|..++.|.|.|||+||+.||+.||..|
T Consensus         1 ~p~~~L~e~~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L   68 (68)
T cd00048           1 NPKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITGEGEGSSKKEAKQNAAEAALRKL   68 (68)
T ss_pred             ChHHHHHHHHHHcCCCCCeEEEeeeeCCCCCCeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence            7999999999999999999999654  46889999999999988889999999999999999999865

Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.

>PRK00102 rnc ribonuclease III; Reviewed

Probab=99.61  E-value=2.4e-15  Score=138.92  Aligned_cols=138  Identities=27%  Similarity=0.291  Sum_probs=105.8

Q ss_pred             HHHHHHHHHHcCCCCCceEEeccCCCCC-CceEEEEEEC------ceEEeCCCCCCchHHHHHHHHHHHHHHHHhhhhcC
Q 018960            3 KNRLQEHAQRSGIPLPVYQSHNEGFQHA-PKFRASVSVD------GVTYTSPNTFSHRKAAEQDVAKIALECISKKIKDE   75 (348)
Q Consensus         3 KS~LqE~~QK~g~~LP~Y~lv~~Gp~H~-~~Ft~SV~vD------GaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~~~e   75 (348)
                      ...|..++.++|  +..|...+.|.... ......+..|      |++|.+.|    ...|+++.-+.+...+....   
T Consensus        82 n~~la~~a~~lg--l~~~i~~~~~~~~~~~~~~~k~~ad~~EA~iGAiyld~g----~~~~~~~i~~~~~~~l~~~~---  152 (229)
T PRK00102         82 EESLAEIARELG--LGEYLLLGKGEEKSGGRRRPSILADAFEALIGAIYLDQG----LEAARKFILRLFEPRIEEID---  152 (229)
T ss_pred             HHHHHHHHHHCC--cHHHHccCcHHHHcCCCCCccHHHHHHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHhhc---
Confidence            367899999999  77888766443221 1223345555      89999976    57777776666444333321   


Q ss_pred             CCCCCCCCCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHh
Q 018960           76 GCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLV  153 (348)
Q Consensus        76 ~~~~~~~~~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~  153 (348)
                          ......|||+.|+||||++++..|.|+++.+  +.|.+.|+|.|.++|..+++|.|.|||+||+.||+.||+.|..
T Consensus       153 ----~~~~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~skk~Ae~~AA~~Al~~l~~  228 (229)
T PRK00102        153 ----LGDLVKDYKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKELGEGTGSSKKEAEQAAAKQALKKLKE  228 (229)
T ss_pred             ----cccccCCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHhh
Confidence                1234679999999999999999999999876  3588999999999999999999999999999999999999864

>TIGR02191 RNaseIII ribonuclease III, bacterial

Probab=99.60  E-value=2.7e-15  Score=137.45  Aligned_cols=136  Identities=29%  Similarity=0.341  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHcCCCCCceEEeccCCCCC-CceEEEEEEC------ceEEeCCCCCCchHHHHHHHHHHHHHHHHhhhhcC
Q 018960            3 KNRLQEHAQRSGIPLPVYQSHNEGFQHA-PKFRASVSVD------GVTYTSPNTFSHRKAAEQDVAKIALECISKKIKDE   75 (348)
Q Consensus         3 KS~LqE~~QK~g~~LP~Y~lv~~Gp~H~-~~Ft~SV~vD------GaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~~~e   75 (348)
                      ...|..++.++|  ++.|.....+.... ......+..|      |++|.+.|    ...|+++..+.++..+.....  
T Consensus        76 n~~la~~a~~~g--l~~~i~~~~~~~~~~~~~~~k~~ad~~eAliGAiyld~g----~~~~~~~i~~~~~~~~~~~~~--  147 (220)
T TIGR02191        76 EESLAEVARELG--LGKFLLLGKGEEKSGGRRRESILADAFEALIGAIYLDSG----LEAARKFILKLLIPRIDAIEK--  147 (220)
T ss_pred             HHHHHHHHHHCC--cHHHhccCchHhhcCCcccchHHHHHHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHhhhc--
Confidence            357899999998  77787765432221 2223445555      89999976    788998888886665554321  


Q ss_pred             CCCCCCCCCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHH
Q 018960           76 GCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL  151 (348)
Q Consensus        76 ~~~~~~~~~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L  151 (348)
                           .....|||+.|+||||++++..|.|+++.+  ++|.+.|.|.|.++|..++.|.|.|||+||+.||+.||+.|
T Consensus       148 -----~~~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~~~~~~~~~g~g~skk~A~~~AA~~Al~~l  220 (220)
T TIGR02191       148 -----EETLKDYKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYGEGKGKSKKEAEQNAAKAALEKL  220 (220)
T ss_pred             -----ccccCChHHHHHHHHHHcCCCCceEEEecccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHhC
Confidence                 124679999999999999998899999865  45889999999999999999999999999999999999865

This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.

>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional

Probab=99.60  E-value=4.2e-15  Score=134.72  Aligned_cols=74  Identities=26%  Similarity=0.374  Sum_probs=67.4

Q ss_pred             CCCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHhhCC
Q 018960           82 QDTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSG  156 (348)
Q Consensus        82 ~~~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~s~  156 (348)
                      ....|||+.||||||+++..+ .|+++.+  ++|.+.|+++|.|+|..++.|.|+|||+|||+||+.||..|.....
T Consensus       105 ~k~~DpKS~LQE~~Q~~~~~l-~Y~li~~~GpdH~~~Ftv~V~V~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~~~~  180 (183)
T PHA02701        105 LKTLNPVSAVNEFCMRTHRPL-EFCETRSGGHDHCPLFTCTIVVSGKVVATASGCSKKLARHAACADALTILINNCG  180 (183)
T ss_pred             CCCCCccHHHHHHHHhcCCCC-eEEEEEeECCCCCceEEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHHHhhcc
Confidence            345799999999999999888 8998876  5799999999999999999999999999999999999999977653

>smart00358 DSRM Double-stranded RNA binding motif

Probab=99.58  E-value=9.7e-15  Score=108.87  Aligned_cols=64  Identities=38%  Similarity=0.443  Sum_probs=59.4

Q ss_pred             hhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHH
Q 018960           87 CKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL  151 (348)
Q Consensus        87 pKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L  151 (348)
                      ||+.|+||||++++ .|.|+++..  ++|.+.|.|.|.|+|..++.|.|.|||+||+.||+.||..|
T Consensus         1 p~~~L~e~~~~~~~-~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L   66 (67)
T smart00358        1 PKSLLQELAQKRGL-PPEYELVKEEGPDHAPRFTVTVKVGGEYTGEGEGSSKKEAKQRAAEAALRSL   66 (67)
T ss_pred             CchHHHHHHHHCCC-CCEEEEEeeeCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHhc
Confidence            68999999999999 789999864  56899999999999988899999999999999999999887

>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []

Probab=99.54  E-value=3.1e-14  Score=106.69  Aligned_cols=65  Identities=34%  Similarity=0.492  Sum_probs=56.3

Q ss_pred             hhHHHHHHHHHcCCCCCcEEEeec-CCCC-CcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHH
Q 018960           87 CKSILNEFAVKMNLELPAYSTRQS-EALL-PVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL  151 (348)
Q Consensus        87 pKs~LQE~cQk~~~~~P~Y~~v~e-pgH~-~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L  151 (348)
                      ||+.|+|||+++++.+|.|..... ++|. +.|.|+|.|+|..++.|.|.|||+||+.||+.||+.|
T Consensus         1 ~~~~L~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L   67 (67)
T PF00035_consen    1 PKSRLNEYCQKNKFPPPYYYIEEEGPSHHRPRFICTVYIDGKEYGEGEGSSKKEAKQQAAKKALQKL   67 (67)
T ss_dssp             HHHHHHHHHHHCTSSEEEEEEEEESSSSSSEEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCCCEEEEEEeCCCCCCceEEEEEEECCEEEeEeccCCHHHHHHHHHHHHHHhC
Confidence            789999999999988755544444 3444 7999999999999999999999999999999999987

It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....

>PHA03103 double-strand RNA-binding protein; Provisional

Probab=99.52  E-value=5e-14  Score=128.09  Aligned_cols=73  Identities=21%  Similarity=0.290  Sum_probs=64.1

Q ss_pred             CCCCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHhhC
Q 018960           81 NQDTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTS  155 (348)
Q Consensus        81 ~~~~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~s  155 (348)
                      +....|||+.||||||+++...  |..+.+  ++|.+.|++.|.|+|..+++|.|+|||+|||+||+.||..|....
T Consensus       105 d~K~kNpKS~LQE~~Qk~~~~~--y~~i~~~Gp~H~p~F~v~V~I~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~~~  179 (183)
T PHA03103        105 SWKDKNPCTVINEYCQITSRDW--SINITSSGPSHSPTFTASVIISGIKFKPAIGSTKKEAKNNAAKLAMDKILNYV  179 (183)
T ss_pred             ccccCChhHHHHHHHHHhCCCe--EEEEEeeCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHhcc
Confidence            4456799999999999999875  555544  579999999999999999999999999999999999999997654

>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]

Probab=99.31  E-value=8.4e-12  Score=126.53  Aligned_cols=175  Identities=19%  Similarity=0.189  Sum_probs=130.1

Q ss_pred             ChHHHHHHHHHHcCCCCCceEEeccCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHhhhhc------
Q 018960            1 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKIKD------   74 (348)
Q Consensus         1 myKS~LqE~~QK~g~~LP~Y~lv~~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~~~------   74 (348)
                      |..-+|+||+|+....+|.|++.. -.+....|..+|.+|+..|++| +|.|||.||..||+.+|..|......      
T Consensus       376 s~vCiLhEy~q~~lk~~pvyef~e-~~n~stpysa~v~~d~~~yGsG-~g~sKK~Ak~~AAR~tLeiLIPd~~~~~~n~~  453 (650)
T KOG4334|consen  376 SKVCILHEYAQQCLKSLPVYEFAE-NDNNSTPYSAGVLPDLFPYGSG-VGASKKTAKLVAARDTLEILIPDLRVSEDNVC  453 (650)
T ss_pred             eeeehHHHHHHHHhhhcceeehhh-ccCCCCcccccccccccccccc-cccchHHHHHHHHHHHHHHhcchhhhcccccc
Confidence            345689999999888899997764 4455678999999999999985 99999999999999999998764321      


Q ss_pred             CC-----------------CCC---------CCCCCCChhHHHHHHHHHcCCC--C-CcEEEeecCCCCCcEEEEEEECC
Q 018960           75 EG-----------------CPL---------INQDTVFCKSILNEFAVKMNLE--L-PAYSTRQSEALLPVFVSSLVFNG  125 (348)
Q Consensus        75 e~-----------------~~~---------~~~~~~npKs~LQE~cQk~~~~--~-P~Y~~v~epgH~~~F~v~V~I~g  125 (348)
                      +.                 +..         .......|-.+|.++.+++..-  + ..++++........|++.|   |
T Consensus       454 d~k~~~~~k~q~~le~F~~I~Iedprv~e~ctk~~~psPy~iL~~cl~Rn~g~~d~~ik~E~i~~~nqkse~im~~---G  530 (650)
T KOG4334|consen  454 DGKVEEDGKQQGFLELFKKIKIEDPRVVEMCTKCAIPSPYNILRDCLSRNLGWNDLVIKKEMIGNGNQKSEVIMIL---G  530 (650)
T ss_pred             cccccccccchhHHHHhhcccccCchHHHHhhhcCCCCHHHHHHHHHHhhcCCcceeeeeeccCCCCccceeEeee---c
Confidence            00                 000         0112357889999998888532  1 1333333222444788887   7


Q ss_pred             EEeeeeecCCHHHHHHHHHHHHHHHHHhh-CCChhHHHHHHHhhhhHHH--hhhcccCCcccceee
Q 018960          126 VTYTGEPGRSKKEAEQLAARAVIRTLLVT-SGSATILSEIIKSKGKLYA--ALNKVKESNYSTQKI  188 (348)
Q Consensus       126 ~~~~~G~G~SKKeAKq~AA~~AL~~L~~~-s~~~~ll~e~i~sk~~l~~--~~~k~k~~~~s~qk~  188 (348)
                      +....|++.+|++++|.|.+..|+.|... .+||++|        ++|+  +++-+++.+.|.+.+
T Consensus       531 kht~~~~cknkr~gkQlASQ~ilq~lHPh~~twGSlL--------riYGr~sik~vkq~~~s~~~V  588 (650)
T KOG4334|consen  531 KHTEEAECKNKRQGKQLASQRILQKLHPHLLTWGSLL--------RIYGRLSIKAVKQHSKSYFQV  588 (650)
T ss_pred             cceeeeeeechhHHHHHHHHHHHHHhCHHhhhHHHHH--------HHhhhhhhHHHHhhcccceee
Confidence            77778999999999999999999999876 7899999        7888  556667766665444

>smart00358 DSRM Double-stranded RNA binding motif

Probab=99.25  E-value=2.9e-11  Score=90.03  Aligned_cols=65  Identities=38%  Similarity=0.508  Sum_probs=59.1

Q ss_pred             hHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHH
Q 018960            2 HKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECI   68 (348)
Q Consensus         2 yKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L   68 (348)
                      |++.|+|||+++++ .|.|.+.. .|+.|.+.|.+.|.++|..+.. |.|.|||+||+.||+.+|..|
T Consensus         1 p~~~L~e~~~~~~~-~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~-g~g~sKk~Ak~~AA~~al~~L   66 (67)
T smart00358        1 PKSLLQELAQKRGL-PPEYELVKEEGPDHAPRFTVTVKVGGEYTGE-GEGSSKKEAKQRAAEAALRSL   66 (67)
T ss_pred             CchHHHHHHHHCCC-CCEEEEEeeeCCCCCCcEEEEEEECCEEEEE-eccCCHHHHHHHHHHHHHHhc
Confidence            68999999999999 88999887 7899999999999999987765 589999999999999999875

>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1

Probab=99.22  E-value=3.1e-11  Score=96.29  Aligned_cols=68  Identities=28%  Similarity=0.396  Sum_probs=58.6

Q ss_pred             CChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEee----------eeecCCHHHHHHHHHHHHHHHHH
Q 018960           85 VFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYT----------GEPGRSKKEAEQLAARAVIRTLL  152 (348)
Q Consensus        85 ~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~----------~G~G~SKKeAKq~AA~~AL~~L~  152 (348)
                      .++++.|+|+|++++|..|.|++..+  ++|.+.|.+.|.|++..+.          .-...+||+|+..||+.+|+.|.
T Consensus         1 k~a~~~L~elC~k~~W~~P~y~l~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~Lg   80 (80)
T PF14709_consen    1 KSAVSLLNELCQKNKWGPPVYELVSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQALG   80 (80)
T ss_pred             CCHHHHHHHHHHhcCCCCCeEEEEeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhcC
Confidence            36899999999999999999999865  5799999999999886652          12458999999999999999873

>cd00048 DSRM Double-stranded RNA binding motif

Probab=99.21  E-value=6.6e-11  Score=87.80  Aligned_cols=67  Identities=40%  Similarity=0.533  Sum_probs=58.8

Q ss_pred             ChHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHH
Q 018960            1 MHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECI   68 (348)
Q Consensus         1 myKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L   68 (348)
                      .|++.|+|||+++++..|.|.+.. .|+.|.+.|.+.|.++|..+.. |.|.|||+||+.||+.+|..|
T Consensus         1 ~p~~~L~e~~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~-g~g~sKk~Ak~~AA~~al~~L   68 (68)
T cd00048           1 NPKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITGE-GEGSSKKEAKQNAAEAALRKL   68 (68)
T ss_pred             ChHHHHHHHHHHcCCCCCeEEEeeeeCCCCCCeEEEEEEECCEEEEE-eecCCHHHHHHHHHHHHHHhC
Confidence            379999999999988899999954 7888899999999999966665 489999999999999999754

Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.

>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional

Probab=99.20  E-value=3.7e-11  Score=109.17  Aligned_cols=67  Identities=21%  Similarity=0.328  Sum_probs=61.1

Q ss_pred             hHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHh
Q 018960            2 HKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK   70 (348)
Q Consensus         2 yKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~   70 (348)
                      ||+.||||||+.+..+ .|.++. .|+.|.+.|++.|.++|..|..| .|+|||+||++||+.||..|..
T Consensus       110 pKS~LQE~~Q~~~~~l-~Y~li~~~GpdH~~~Ftv~V~V~g~~~g~G-~G~SKKeAEQ~AAk~AL~~L~~  177 (183)
T PHA02701        110 PVSAVNEFCMRTHRPL-EFCETRSGGHDHCPLFTCTIVVSGKVVATA-SGCSKKLARHAACADALTILIN  177 (183)
T ss_pred             ccHHHHHHHHhcCCCC-eEEEEEeECCCCCceEEEEEEECCEEEEEE-EeCCHHHHHHHHHHHHHHHHHh
Confidence            8999999999998877 898776 69999999999999999998864 8999999999999999988754

>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []

Probab=99.20  E-value=4.4e-11  Score=89.52  Aligned_cols=66  Identities=38%  Similarity=0.554  Sum_probs=58.0

Q ss_pred             hHHHHHHHHHHcCCCCCceEEeccCCCCC-CceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHH
Q 018960            2 HKNRLQEHAQRSGIPLPVYQSHNEGFQHA-PKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECI   68 (348)
Q Consensus         2 yKS~LqE~~QK~g~~LP~Y~lv~~Gp~H~-~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L   68 (348)
                      |++.|+|||+++++.++.|.....|+.+. +.|.++|.++|..|.. |.|+|||+||+.||..+|..|
T Consensus         1 ~~~~L~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~-g~g~sKk~Ak~~AA~~al~~L   67 (67)
T PF00035_consen    1 PKSRLNEYCQKNKFPPPYYYIEEEGPSHHRPRFICTVYIDGKEYGE-GEGSSKKEAKQQAAKKALQKL   67 (67)
T ss_dssp             HHHHHHHHHHHCTSSEEEEEEEEESSSSSSEEEEEEEEETTEEEEE-EEESSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCCCEEEEEEeCCCCCCceEEEEEEECCEEEeE-eccCCHHHHHHHHHHHHHHhC
Confidence            78999999999998887777766676665 8999999999999985 489999999999999999876

It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....

>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]

Probab=99.19  E-value=4e-11  Score=117.33  Aligned_cols=105  Identities=25%  Similarity=0.303  Sum_probs=85.5

Q ss_pred             CCchHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCC--CChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECC
Q 018960           50 FSHRKAAEQDVAKIALECISKKIKDEGCPLINQDT--VFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNG  125 (348)
Q Consensus        50 GsSKKeAKq~AAk~aL~~L~~~~~~e~~~~~~~~~--~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g  125 (348)
                      |.+...|++.||-.+|..|......+... .+.+.  ..+++.|||||.+++..+ .|++.++  +.|++.|++.|.|+.
T Consensus         2 g~t~~~a~~daaa~al~~l~~~~~~~~~~-~~~~~g~KS~IS~l~E~~~r~~~~v-~fevl~eeGp~H~~~fv~rvtvg~   79 (339)
T KOG3732|consen    2 GKTMQQAKHDAAAKALQVLQNGLISEGVM-LNADPGAKSPISLLQEYGLRRGLTP-VYEVLREEGPPHMPNFVFRVTVGE   79 (339)
T ss_pred             ccchhhhhccccccchhhccCCCcchhcc-cccCcccCChHHHHHHHHHHhCCCc-ceeeeeccCCccCCCeEEEEEEee
Confidence            45678999999999998877655332211 12222  899999999999999876 9999997  569999999999985


Q ss_pred             EEeeeeecCCHHHHHHHHHHHHHHHHHhhCCC
Q 018960          126 VTYTGEPGRSKKEAEQLAARAVIRTLLVTSGS  157 (348)
Q Consensus       126 ~~~~~G~G~SKKeAKq~AA~~AL~~L~~~s~~  157 (348)
                       ..+.|.|+|||.||+.||..+|..|+.....
T Consensus        80 -~~a~GeG~sKK~AKh~AA~~~L~~lk~l~~l  110 (339)
T KOG3732|consen   80 -ITATGEGKSKKLAKHRAAEALLKELKKLPPL  110 (339)
T ss_pred             -eEEecCCCchhHHHHHHHHHHHHHHhcCCCc
Confidence             4577999999999999999999999987643

>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]

Probab=99.17  E-value=1.3e-10  Score=120.16  Aligned_cols=163  Identities=29%  Similarity=0.334  Sum_probs=126.8

Q ss_pred             CceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHhhhhc-------CC----CC-------
Q 018960           18 PVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKIKD-------EG----CP-------   78 (348)
Q Consensus        18 P~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~~~-------e~----~~-------   78 (348)
                      ..|..+. .|+.|.+.|..+|.++|..|.       +|.|+..||..++..+.+..+.       +.    +.       
T Consensus        10 ~~~~~~~q~~p~~~p~~~~~~~v~~~~~~-------~k~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (542)
T KOG2777|consen   10 LQYNLVSQTGPVHAPLFPFSVEVNGQEFP-------KKKAKQRAAEKALRVFLQFPEAHLSMGGTEGVNEDLTSDQADAF   82 (542)
T ss_pred             cccccccccCCCCCCcccceEEecccccc-------cccccchhhhHHHHHHhhcCCcccccCCCCccccccchhhhHHH
Confidence            3455444 799999999999999998765       7899999999999988775432       10    00       


Q ss_pred             -CCCCCCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHhhC
Q 018960           79 -LINQDTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTS  155 (348)
Q Consensus        79 -~~~~~~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~s  155 (348)
                       .......||++.|+||++     -+.|.++.+  +.|.+.|.|.|.|||+.|..| |+|||+||+.||+.||+.|....
T Consensus        83 ~~~~~~~~npv~ll~e~~~-----~~~~~~~~~~~~~~~~~F~~~~~vdg~~~~~~-~~sKk~ak~~aa~~al~~l~~~~  156 (542)
T KOG2777|consen   83 LSLGKEGKNPVSLLHELAN-----GLFFDFVNESGPQHAPKFVMSVVVDGRWFEGG-GRSKKEAKQEAAMAALQVLFKID  156 (542)
T ss_pred             HhhhhccCCchHHHHHHhc-----ccceeeeccCCCCCCceEEEEEEECCEEccCC-CcchHHHHHHHHHHHHHHHHhcc
Confidence             011236899999999998     458888877  469999999999999999878 99999999999999999998653


Q ss_pred             CC----------------hhHHHHHHHhhhhHHHhhhcccCCcccceeeccCccccc
Q 018960          156 GS----------------ATILSEIIKSKGKLYAALNKVKESNYSTQKIATSYVPTT  196 (348)
Q Consensus       156 ~~----------------~~ll~e~i~sk~~l~~~~~k~k~~~~s~qk~~~~~~~~~  196 (348)
                      ..                ++.+.++..  .+ |+.++++..+.+.+-++.+++|.+.
T Consensus       157 ~~~~~~~~~~~~e~~~~~~~~Ia~lv~--~k-F~~L~k~~kp~~~~~tvLAgvv~~~  210 (542)
T KOG2777|consen  157 ENPERPSEALTLENPSTLGDEIAELVL--EK-FDELTKNGKPIPREWTVLAGVVMTK  210 (542)
T ss_pred             CCcccccccccccCCChHHHHHHHHHH--HH-HHHHHhcCCCccchhhhhhhhhhcc
Confidence            22                233333333  22 3778888889999999999998877

>PHA03103 double-strand RNA-binding protein; Provisional

Probab=99.14  E-value=1.3e-10  Score=105.91  Aligned_cols=67  Identities=25%  Similarity=0.356  Sum_probs=59.0

Q ss_pred             hHHHHHHHHHHcCCCCCceEEeccCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHh
Q 018960            2 HKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK   70 (348)
Q Consensus         2 yKS~LqE~~QK~g~~LP~Y~lv~~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~   70 (348)
                      ||+.||||||+.+..+ .|.+...|+.|.+.|+++|.++|..|..| .|+|||+||+.||+.||..|..
T Consensus       111 pKS~LQE~~Qk~~~~~-y~~i~~~Gp~H~p~F~v~V~I~g~~~g~G-~G~SKKeAEQ~AAk~AL~~L~~  177 (183)
T PHA03103        111 PCTVINEYCQITSRDW-SINITSSGPSHSPTFTASVIISGIKFKPA-IGSTKKEAKNNAAKLAMDKILN  177 (183)
T ss_pred             hhHHHHHHHHHhCCCe-EEEEEeeCCCCCceEEEEEEECCEEEEEe-eeCCHHHHHHHHHHHHHHHHHh
Confidence            7899999999998654 44545589999999999999999999875 8999999999999999998855

>PRK12371 ribonuclease III; Reviewed

Probab=99.02  E-value=9e-10  Score=103.90  Aligned_cols=68  Identities=32%  Similarity=0.367  Sum_probs=61.7

Q ss_pred             hHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHh
Q 018960            2 HKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK   70 (348)
Q Consensus         2 yKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~   70 (348)
                      ||+.||||||+.+...|.|.++. .|+.|.+.|++.|.++|..+.. |.|+|||+|++.||+.+|..+..
T Consensus       163 ~Ks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~~~~~~~-g~G~sKK~Ae~~AA~~al~~~~~  231 (235)
T PRK12371        163 AKTELQEWAHAQFGVTPVYRVDSRSGPDHDPRFTVEVEVKGFAPET-GEGRSKRAAEQVAAEKMLEREGV  231 (235)
T ss_pred             HHHHHHHHHHhcCCCCCeEEEEEeecCCCCCeEEEEEEECCEEEEE-eeeCCHHHHHHHHHHHHHHHhhh
Confidence            89999999999887789999885 7999999999999999988765 48999999999999999988754

>KOG1817 consensus Ribonuclease [RNA processing and modification]

Probab=98.99  E-value=2e-09  Score=108.47  Aligned_cols=136  Identities=20%  Similarity=0.200  Sum_probs=106.6

Q ss_pred             HHHHHHHcCCCCCceEEeccCCCCCCceEEEEEEC------ceEEeCCCCCCchHHHHHHHHHHHHHHHHhhhhcCCCCC
Q 018960            6 LQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVD------GVTYTSPNTFSHRKAAEQDVAKIALECISKKIKDEGCPL   79 (348)
Q Consensus         6 LqE~~QK~g~~LP~Y~lv~~Gp~H~~~Ft~SV~vD------GaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~~~e~~~~   79 (348)
                      -..||.-+|  .++|.+..........-+-.+++|      |+.|.|+|    ...++++....+.-.|....       
T Consensus       355 qakva~~lg--f~e~li~n~~~k~~~~lk~K~~ADlfEAfiGaLyvD~~----le~~~qf~~~l~~Prl~~fi-------  421 (533)
T KOG1817|consen  355 QAKVADDLG--FHEYLITNFDLKDFQNLKLKDYADLFEAFIGALYVDKG----LEYCRQFLRVLFFPRLKEFI-------  421 (533)
T ss_pred             HHHHHHHhC--CchhhhhCcchhhhhhhhHHHHHHHHHHHHHHHhhcCC----cHHHHHHHHHHhhHHHHHHH-------
Confidence            356788888  778877653222222223445555      88899876    78899998888777666654       


Q ss_pred             CCCCCCChhHHHHHHHHHcCCC------CCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHH
Q 018960           80 INQDTVFCKSILNEFAVKMNLE------LPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL  151 (348)
Q Consensus        80 ~~~~~~npKs~LQE~cQk~~~~------~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L  151 (348)
                      .++++.||++.||.+|......      +|.|.+...  +.+++.|.+.|+++|+.+++|+|+|.|+|+..||+.||+.+
T Consensus       422 ~nq~wndpkskLqq~cl~~rys~~~epdip~y~V~~~~gpa~~r~y~Vavyf~gkrlat~~G~nik~Ae~rAA~~ALe~~  501 (533)
T KOG1817|consen  422 RNQDWNDPKSKLQQCCLTLRYSLGGEPDIPLYKVLGAKGPANDRNYKVAVYFKGKRLATGVGSNIKQAEMRAAMQALENL  501 (533)
T ss_pred             HhhhccCcHHHHHHHHHHHhcccCCCCCCceEEEecccCCCCCCceEEEEEECCEEEeeccCchHhHHHHHHHHHHHHHH
Confidence            3577899999999999988664      578887765  45999999999999999999999999999999999999999


Q ss_pred             Hhh
Q 018960          152 LVT  154 (348)
Q Consensus       152 ~~~  154 (348)
                      ..+
T Consensus       502 ~~d  504 (533)
T KOG1817|consen  502 KMD  504 (533)
T ss_pred             Hhh
Confidence            863

>PRK14718 ribonuclease III; Provisional

Probab=98.93  E-value=2e-09  Score=109.37  Aligned_cols=69  Identities=32%  Similarity=0.393  Sum_probs=61.9

Q ss_pred             hHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHh
Q 018960            2 HKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK   70 (348)
Q Consensus         2 yKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~   70 (348)
                      ||+.||||||+.++.+|.|.++. .|+.|.+.|.+.|+++|..+...|.|.|||+|++.||+.+|..|..
T Consensus       153 yKS~LQE~~Qk~~~~~PeY~li~esGPdH~k~F~V~V~v~g~~~~G~G~G~SKKeAEQ~AAk~AL~kL~~  222 (467)
T PRK14718        153 AKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDIKVSGSGASRRAAEQAAAKKALDEVTA  222 (467)
T ss_pred             HHHHHHHHHHhcCCCCCeeEEeeeecCCCCCeEEEEEEECCeeeEEEEEcCCHHHHHHHHHHHHHHHhcc
Confidence            79999999999999999999986 7999999999999999854433358999999999999999999874

>PRK12372 ribonuclease III; Reviewed

Probab=98.87  E-value=4.7e-09  Score=105.80  Aligned_cols=69  Identities=32%  Similarity=0.377  Sum_probs=61.7

Q ss_pred             hHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHh
Q 018960            2 HKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK   70 (348)
Q Consensus         2 yKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~   70 (348)
                      ||+.||||||+.++.+|.|.++. .|+.|++.|++.|+++|..+...|.|.|||+|++.||+.+|..|..
T Consensus       153 ~KS~LQE~~Q~~~~~~P~Y~lv~e~Gp~h~~~F~V~V~v~g~~~~g~G~G~SKKeAEQ~AAr~AL~kL~~  222 (413)
T PRK12372        153 AKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDVKVSGSGASRRAAEQAAAKKALDEVMA  222 (413)
T ss_pred             HHHHHHHHHHhcCCCCCeeEEeeeecCCCCceEEEEEEECCeEEEEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence            89999999999999999999886 7999999999999999854433458999999999999999999874

>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]

Probab=98.84  E-value=1e-08  Score=96.98  Aligned_cols=68  Identities=35%  Similarity=0.443  Sum_probs=62.7

Q ss_pred             hHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHh
Q 018960            2 HKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK   70 (348)
Q Consensus         2 yKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~   70 (348)
                      ||+.||||+|..+..+|.|.++. +|+.|++.|.+.|.++|..++. |.|+|||+|++.||+.+|..|..
T Consensus       163 ~Kt~LQe~~q~~~~~~p~Y~~v~~~g~~h~~~F~v~v~v~~~~~g~-G~G~skk~AEq~AA~~al~~l~~  231 (235)
T COG0571         163 PKTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGT-GKGRSKKEAEQAAAEQALKKLGV  231 (235)
T ss_pred             hhHHHHHHHHhcCCCCCeEEEeeccCCCCCceEEEEEEECCeeEEE-ecccCHHHHHHHHHHHHHHHhcc
Confidence            79999999999999999999988 5999999999999999977766 48999999999999999988754

>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1

Probab=98.81  E-value=1.5e-08  Score=80.84  Aligned_cols=67  Identities=27%  Similarity=0.379  Sum_probs=57.0

Q ss_pred             hHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEe---------CCCCCCchHHHHHHHHHHHHHHH
Q 018960            2 HKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYT---------SPNTFSHRKAAEQDVAKIALECI   68 (348)
Q Consensus         2 yKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~---------dgG~GsSKKeAKq~AAk~aL~~L   68 (348)
                      .++.|+|+|+|++|+.|.|.+.. .|++|...|.++|.+.+..+.         ..--.+++|+||..||+.+|..|
T Consensus         3 a~~~L~elC~k~~W~~P~y~l~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~L   79 (80)
T PF14709_consen    3 AVSLLNELCQKNKWGPPVYELVSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQAL   79 (80)
T ss_pred             HHHHHHHHHHhcCCCCCeEEEEeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhc
Confidence            47899999999999999999975 799999999999999976552         11234689999999999999876

>PRK00102 rnc ribonuclease III; Reviewed

Probab=98.78  E-value=2e-08  Score=92.83  Aligned_cols=68  Identities=41%  Similarity=0.523  Sum_probs=61.6

Q ss_pred             hHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHh
Q 018960            2 HKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK   70 (348)
Q Consensus         2 yKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~   70 (348)
                      ||+.|+||||+.++..|.|.++. .|+.|.+.|++.|.++|..+..| .|.|||+||+.||+.||..|..
T Consensus       160 pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g-~g~skk~Ae~~AA~~Al~~l~~  228 (229)
T PRK00102        160 YKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKELGEG-TGSSKKEAEQAAAKQALKKLKE  228 (229)
T ss_pred             HHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEe-eeCCHHHHHHHHHHHHHHHHhh
Confidence            78999999999998889998866 68999999999999999888765 8999999999999999998754

>TIGR02191 RNaseIII ribonuclease III, bacterial

Probab=98.65  E-value=7.6e-08  Score=88.25  Aligned_cols=66  Identities=44%  Similarity=0.560  Sum_probs=59.1

Q ss_pred             hHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHH
Q 018960            2 HKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECI   68 (348)
Q Consensus         2 yKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L   68 (348)
                      ||+.|+||||+.++..|.|.++. .|+.|.+.|.+.|.++|..+..| .|.|||+|++.||+.||+.|
T Consensus       154 pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~~~~~~~~~g-~g~skk~A~~~AA~~Al~~l  220 (220)
T TIGR02191       154 YKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYGEG-KGKSKKEAEQNAAKAALEKL  220 (220)
T ss_pred             hHHHHHHHHHHcCCCCceEEEecccCCCCCceEEEEEEECCEEEEEe-eeCCHHHHHHHHHHHHHHhC
Confidence            78999999999988789999875 58889999999999999888765 79999999999999999753

This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.

>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]

Probab=98.13  E-value=1.8e-06  Score=88.53  Aligned_cols=74  Identities=24%  Similarity=0.310  Sum_probs=66.3

Q ss_pred             CCCCCChhHHHHHHHHHcCCCCCcEEEeecCCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHhh
Q 018960           81 NQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVT  154 (348)
Q Consensus        81 ~~~~~npKs~LQE~cQk~~~~~P~Y~~v~epgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~  154 (348)
                      +......+..|+||+|+....+|.|++.......-.|...|.+++-.|++|.|.|||.||..||+.+|+.|..+
T Consensus       371 npngks~vCiLhEy~q~~lk~~pvyef~e~~n~stpysa~v~~d~~~yGsG~g~sKK~Ak~~AAR~tLeiLIPd  444 (650)
T KOG4334|consen  371 NPNGKSKVCILHEYAQQCLKSLPVYEFAENDNNSTPYSAGVLPDLFPYGSGVGASKKTAKLVAARDTLEILIPD  444 (650)
T ss_pred             CCCCceeeehHHHHHHHHhhhcceeehhhccCCCCcccccccccccccccccccchHHHHHHHHHHHHHHhcch
Confidence            44567788899999999999999998877656677899999999999999999999999999999999999864

>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis]

Probab=97.77  E-value=3.7e-05  Score=75.00  Aligned_cols=96  Identities=23%  Similarity=0.271  Sum_probs=78.6

Q ss_pred             CCChhHHHHHHHHHcCCCCCcEEEeecCC---CCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHhhCCChhH
Q 018960           84 TVFCKSILNEFAVKMNLELPAYSTRQSEA---LLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATI  160 (348)
Q Consensus        84 ~~npKs~LQE~cQk~~~~~P~Y~~v~epg---H~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~s~~~~l  160 (348)
                      ..+|...|-++|++++..-|+|+++.+.|   -.+.|.|-++-|.+.++.|.|.|-+.|++.||+.||..|.....    
T Consensus       231 l~~P~~~L~~lckr~~l~epe~Rll~esGr~S~~PvyvVgiYs~kkllGqG~Gesl~~A~e~AA~dAL~k~y~~tp----  306 (333)
T KOG3769|consen  231 LQWPRRLLSRLCKRRGLKEPESRLLAESGRNSAEPVYVVGIYSGKKLLGQGQGESLKLAEEQAARDALIKLYDHTP----  306 (333)
T ss_pred             ccchHHHHHHHHHHcCCCCchhHHHHHhccCccCceEEEEeecCchhhccCcchHHHHHHHHHHHHHHHHHHcCCh----
Confidence            45899999999999999999999998854   57899999999999999999999999999999999988865542    


Q ss_pred             HHHHHHhhhhHHHhhhcccCCcccceeeccCccccccc
Q 018960          161 LSEIIKSKGKLYAALNKVKESNYSTQKIATSYVPTTAI  198 (348)
Q Consensus       161 l~e~i~sk~~l~~~~~k~k~~~~s~qk~~~~~~~~~~~  198 (348)
                                     ..-..++|+++++-...|++.++
T Consensus       307 ---------------~~~~p~~~~~g~~PK~t~~~~~~  329 (333)
T KOG3769|consen  307 ---------------ERQRPPDYSEGKIPKATVRYTSI  329 (333)
T ss_pred             ---------------hhcCCCccccccCCCcceeeccc
Confidence                           12234567776666656666654

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]

Probab=97.40  E-value=0.00026  Score=77.53  Aligned_cols=151  Identities=25%  Similarity=0.274  Sum_probs=119.8

Q ss_pred             hHHHHHHHHHHcCCCCCceEEeccCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHhhhhc-------
Q 018960            2 HKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKIKD-------   74 (348)
Q Consensus         2 yKS~LqE~~QK~g~~LP~Y~lv~~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~~~-------   74 (348)
                      -|+.|..||-|+.+. |.|++..+|.....+|.|.|.+.+..|...|...+||.|+.+||+...++|....+.       
T Consensus         3 ~k~fly~~~~k~~~~-p~~d~~~~~~~~rqrf~ce~~~~~~~~~~~~~stnkKda~knac~dfv~ylvr~Gk~n~~d~p~   81 (1282)
T KOG0921|consen    3 VKEFLYAWLGKNKYG-PTYDIRSEGRKGRQRFLCEVRVEGFGYTAVGNSTNKKDAATNAAQDFCQYLVREGKMQQSDIPT   81 (1282)
T ss_pred             HHHHHHHHHhhhccC-cceehhhhcccchhheeeeeeccCCcceeeecccccchhhHHHHHHHHHHhhhhccccccCCcc
Confidence            378899999999986 899999999999999999999999888877777889999999999999998654210       


Q ss_pred             -------------------------------C---CCC-----C------------------------------------
Q 018960           75 -------------------------------E---GCP-----L------------------------------------   79 (348)
Q Consensus        75 -------------------------------e---~~~-----~------------------------------------   79 (348)
                                                     +   +.+     .                                    
T Consensus        82 ~~s~s~~~~~~l~~~~~a~~~~~~~~g~~~q~~~qd~p~~~~p~~~d~~~~~~g~~~~~~~qkae~~~e~ea~d~~~~ih  161 (1282)
T KOG0921|consen   82 LTSSSLEASSTWQDSETATMFCGGEDGNSFQESQQPIPQKRFPWSNNAYQRNEGTHEQYITQKAEEIAESETVDLNAEIH  161 (1282)
T ss_pred             cccccccCcccccccccccccccccccccCCCCCCCcccccccccccccccCCCCCchhHHHHhhhhhhhhhhccCcccc
Confidence                                           0   000     0                                    


Q ss_pred             CCCCCCChhHHHHHHHHHcCCCCCcEEEeec-CCCCCcEEEEEEE-----CCEEeeeeecCCHHHHHHHHHHHHHHHHHh
Q 018960           80 INQDTVFCKSILNEFAVKMNLELPAYSTRQS-EALLPVFVSSLVF-----NGVTYTGEPGRSKKEAEQLAARAVIRTLLV  153 (348)
Q Consensus        80 ~~~~~~npKs~LQE~cQk~~~~~P~Y~~v~e-pgH~~~F~v~V~I-----~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~  153 (348)
                      .+....|.|..|++|-|+..... .|+.+.. ++|.+.|+.+..+     +-.....+.|.+||.|+...|...+..|..
T Consensus       162 g~wt~eN~K~~ln~~~q~~~~~~-~y~~~~~g~~~~~s~~~e~si~v~~~~~~~~~~~~gsnkk~~~~~ca~s~vrqm~h  240 (1282)
T KOG0921|consen  162 GNWTMENAKKALNEYLQKMRIQD-NYKYTIVGPEHVRSFEAEASIYVPQLNRNLVAKETGSNKKVAEASCALSLVRQLFH  240 (1282)
T ss_pred             CCCCcchhHHHHhHHHhhhhhcc-ccceeecCCccccchhhhHHHhhhhhchhhhhhhccccceecCcchHHHHHHHHHH
Confidence            01123689999999999999966 8888766 6799999987764     223344688999999999999999887754


Q ss_pred             h
Q 018960          154 T  154 (348)
Q Consensus       154 ~  154 (348)
                      -
T Consensus       241 l  241 (1282)
T KOG0921|consen  241 L  241 (1282)
T ss_pred             H
Confidence            3

>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]

Probab=96.89  E-value=0.0053  Score=64.49  Aligned_cols=64  Identities=38%  Similarity=0.413  Sum_probs=54.7

Q ss_pred             hHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHhhh
Q 018960            2 HKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKI   72 (348)
Q Consensus         2 yKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~   72 (348)
                      +.+.|+|+++  +   +.|+++. .|+.|.+.|.+++.+||..|.. | |.|||+||+.||..+|+.|....
T Consensus        92 pv~ll~e~~~--~---~~~~~~~~~~~~~~~~F~~~~~vdg~~~~~-~-~~sKk~ak~~aa~~al~~l~~~~  156 (542)
T KOG2777|consen   92 PVSLLHELAN--G---LFFDFVNESGPQHAPKFVMSVVVDGRWFEG-G-GRSKKEAKQEAAMAALQVLFKID  156 (542)
T ss_pred             chHHHHHHhc--c---cceeeeccCCCCCCceEEEEEEECCEEccC-C-CcchHHHHHHHHHHHHHHHHhcc
Confidence            5788999999  3   3566665 7999999999999999988865 4 89999999999999999987754

>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases

Probab=96.60  E-value=0.011  Score=47.94  Aligned_cols=66  Identities=23%  Similarity=0.330  Sum_probs=43.8

Q ss_pred             hHHHHHHHHHcCCC-----CCcEEEeecCCCCCcEEEEEEECC----EEeeeeecCCHHHHHHHHHHHHHHHHHhhCC
Q 018960           88 KSILNEFAVKMNLE-----LPAYSTRQSEALLPVFVSSLVFNG----VTYTGEPGRSKKEAEQLAARAVIRTLLVTSG  156 (348)
Q Consensus        88 Ks~LQE~cQk~~~~-----~P~Y~~v~epgH~~~F~v~V~I~g----~~~~~G~G~SKKeAKq~AA~~AL~~L~~~s~  156 (348)
                      ++.|+.||++..-.     .|.|.+....+   .|.|+|.+-.    +.+......||+.||+.||-.|...|.....
T Consensus         2 i~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~---~~~c~v~LP~~~pi~~i~g~~~~sk~~AK~sAAf~Ac~~L~~~g~   76 (90)
T PF03368_consen    2 ISLLNRYCSTLPSDSFTNLKPEFEIEKIGS---GFICTVILPINSPIRSIEGPPMRSKKLAKRSAAFEACKKLHEAGE   76 (90)
T ss_dssp             HHHHHHHHTTSSS-TT--SS-EEEEEE--G----EEEEEE--TT-SS--EEEE--SSHHHHHHHHHHHHHHHHHHH-S
T ss_pred             HHHHHHHHhcCCCCCCccCCceEEEEEcCC---cEEEEEECCCCCCCCeEEccccccHHHHHHHHHHHHHHHHHHcCC
Confidence            57899999987532     48888877632   8999998743    2233346799999999999999999987654

This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.

>KOG1817 consensus Ribonuclease [RNA processing and modification]

Probab=96.46  E-value=0.011  Score=60.63  Aligned_cols=68  Identities=24%  Similarity=0.302  Sum_probs=59.1

Q ss_pred             hHHHHHHHHHHcCC------CCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHh
Q 018960            2 HKNRLQEHAQRSGI------PLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK   70 (348)
Q Consensus         2 yKS~LqE~~QK~g~------~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~   70 (348)
                      +++.|+.+|..+..      .+|.|.+.+ .|+.+++.|.+.|+++|..... |.|++.|.|+-.||..||+.+..
T Consensus       429 pkskLqq~cl~~rys~~~epdip~y~V~~~~gpa~~r~y~Vavyf~gkrlat-~~G~nik~Ae~rAA~~ALe~~~~  503 (533)
T KOG1817|consen  429 PKSKLQQCCLTLRYSLGGEPDIPLYKVLGAKGPANDRNYKVAVYFKGKRLAT-GVGSNIKQAEMRAAMQALENLKM  503 (533)
T ss_pred             cHHHHHHHHHHHhcccCCCCCCceEEEecccCCCCCCceEEEEEECCEEEee-ccCchHhHHHHHHHHHHHHHHHh
Confidence            68899999988764      377888877 7999999999999999977666 58999999999999999998765

>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]

Probab=96.33  E-value=0.0027  Score=68.07  Aligned_cols=125  Identities=15%  Similarity=0.085  Sum_probs=89.8

Q ss_pred             EEeccCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHhh------h----hc---CCC----CC----
Q 018960           21 QSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKK------I----KD---EGC----PL----   79 (348)
Q Consensus        21 ~lv~~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~------~----~~---e~~----~~----   79 (348)
                      +++..||.|.++|+.++++||..|..  .|.|++.|+=+||++.|+.....      .    .+   ++.    .+    
T Consensus       396 Lvv~t~P~~~~~~t~e~r~~~~~~~a--~gps~~~~~wh~~~k~lq~~~~p~ga~~r~~~~ge~~a~~p~~~~r~~as~d  473 (816)
T KOG3792|consen  396 LVVDTKPSHRPRRTMEVRVNGLPAEA--EGPSKKTAKWHAARKRLQNEGRPTGAAQRFGRMGEDPASMPEPKGRRPASVD  473 (816)
T ss_pred             ceeccCCcccchhhhhhhhcCCcccc--CCcccccchHHHHHHHhhccCCCccccccccccCCCcccCCCCCCcccCCCc
Confidence            35568999999999999999998886  57999999999999988765210      0    00   000    00    


Q ss_pred             ---------------------------CCCCCCChhHHHHHHHHHcCCCCCcEEEeecC---CCCCcEEEEEEECCEEee
Q 018960           80 ---------------------------INQDTVFCKSILNEFAVKMNLELPAYSTRQSE---ALLPVFVSSLVFNGVTYT  129 (348)
Q Consensus        80 ---------------------------~~~~~~npKs~LQE~cQk~~~~~P~Y~~v~ep---gH~~~F~v~V~I~g~~~~  129 (348)
                                                 .+....++...|+|-    .... .|++..+.   +|.++|.+.|.+.|+. .
T Consensus       474 dr~a~~~~a~~~Pt~~~l~nVqr~vs~~~~alK~vsd~L~Ek----~rg~-k~El~set~~gs~~~R~v~gV~rvG~~-a  547 (816)
T KOG3792|consen  474 DRHANEKHAGIYPTEEELENVQRQVSHLERALKLVSDELAEK----RRGD-KYELPSETGTGSHDKRFVKGVMRVGIL-A  547 (816)
T ss_pred             chhhhccccccCccHHHHHHHHHhhhHHHHhhcchhHHHhhh----cccc-ceecccccCCCCCCceeeeeeeeeehh-h
Confidence                                       001124555556553    2233 78888772   5999999999999985 4


Q ss_pred             eeecCCHHHHHHHHHHHHHHHHHh
Q 018960          130 GEPGRSKKEAEQLAARAVIRTLLV  153 (348)
Q Consensus       130 ~G~G~SKKeAKq~AA~~AL~~L~~  153 (348)
                      .|.+.+++-|+..|+..|++.+..
T Consensus       548 kG~~~~gd~a~~~a~Lca~~pt~~  571 (816)
T KOG3792|consen  548 KGLLLNGDRAVELALLCAEKPTSG  571 (816)
T ss_pred             ccccccchHHHHHHHHhccCcccc
Confidence            699999999999998888766543

>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis]

Probab=94.92  E-value=0.04  Score=54.28  Aligned_cols=69  Identities=17%  Similarity=0.160  Sum_probs=57.5

Q ss_pred             hHHHHHHHHHHcCCCCCceEEec-cCCCC-CCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHhh
Q 018960            2 HKNRLQEHAQRSGIPLPVYQSHN-EGFQH-APKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKK   71 (348)
Q Consensus         2 yKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H-~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~   71 (348)
                      |...|.++|+++|+.-|++.+++ .|..- .+.|.+-++.|-...+. |.|.|.+.|++.||+.+|..+-..
T Consensus       234 P~~~L~~lckr~~l~epe~Rll~esGr~S~~PvyvVgiYs~kkllGq-G~Gesl~~A~e~AA~dAL~k~y~~  304 (333)
T KOG3769|consen  234 PRRLLSRLCKRRGLKEPESRLLAESGRNSAEPVYVVGIYSGKKLLGQ-GQGESLKLAEEQAARDALIKLYDH  304 (333)
T ss_pred             hHHHHHHHHHHcCCCCchhHHHHHhccCccCceEEEEeecCchhhcc-CcchHHHHHHHHHHHHHHHHHHcC
Confidence            56789999999999999999887 45433 68999999998755444 689999999999999999887664

>PF14954 LIX1: Limb expression 1

Probab=94.19  E-value=0.24  Score=46.93  Aligned_cols=82  Identities=22%  Similarity=0.263  Sum_probs=54.8

Q ss_pred             CCCCChhHHHHHHHHHc---CC-----CCCcEEEeecCCCCCcEEEEEEECC-EEeee-eecCCHHHHHHHHHHHHHH-H
Q 018960           82 QDTVFCKSILNEFAVKM---NL-----ELPAYSTRQSEALLPVFVSSLVFNG-VTYTG-EPGRSKKEAEQLAARAVIR-T  150 (348)
Q Consensus        82 ~~~~npKs~LQE~cQk~---~~-----~~P~Y~~v~epgH~~~F~v~V~I~g-~~~~~-G~G~SKKeAKq~AA~~AL~-~  150 (348)
                      ....|-+..||||=|..   +.     .+..|+.+  |+..+-|.|.|++-| -.|+. -.+.||-+|+++||+.||. .
T Consensus        18 ~~~vnvV~~LqeFWq~Kq~r~a~~~~~~lv~YEs~--ps~~ppyVcyVTLPGGSCFGnfq~C~tkAEARR~AAKiALmNS   95 (252)
T PF14954_consen   18 YGDVNVVEALQEFWQMKQSRGADLKSEALVVYESV--PSPSPPYVCYVTLPGGSCFGNFQNCPTKAEARRSAAKIALMNS   95 (252)
T ss_pred             cccchHHHHHHHHHHHHHhccccCCCCCeeeeecc--CCCCCCeEEEEeCCCCCccCccccCCcHHHHHhhhHHHHHHHH
Confidence            34568899999987544   22     23345433  456888999999854 55654 5789999999999999985 3


Q ss_pred             HHhhCCChhHHHHHH
Q 018960          151 LLVTSGSATILSEII  165 (348)
Q Consensus       151 L~~~s~~~~ll~e~i  165 (348)
                      +.++-.+..+..|.|
T Consensus        96 vfNEhPsRrIt~eFi  110 (252)
T PF14954_consen   96 VFNEHPSRRITDEFI  110 (252)
T ss_pred             HHhcCCcccccHHHH
Confidence            445444443443333

>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

Probab=91.70  E-value=0.084  Score=54.28  Aligned_cols=69  Identities=29%  Similarity=0.237  Sum_probs=60.7

Q ss_pred             CCChhHHHHHHHHHcCCCCCcEEEeecCCCCCcEEEEEEECCEEeeeee-cCCHHHHHHHHHHHHHHHHHhh
Q 018960           84 TVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEP-GRSKKEAEQLAARAVIRTLLVT  154 (348)
Q Consensus        84 ~~npKs~LQE~cQk~~~~~P~Y~~v~epgH~~~F~v~V~I~g~~~~~G~-G~SKKeAKq~AA~~AL~~L~~~  154 (348)
                      +..+|..|-.||.+....-|.|++++.  -++.|...+.++|..|..+. -.++|.|+|.||..+|......
T Consensus       374 ~~~~k~~l~~~~~~~~~~~~~ye~~~~--~d~lf~si~~~~~~~~~ssi~~~n~k~aeq~aa~~~l~~s~l~  443 (477)
T KOG2334|consen  374 WDTPKMVLADLCVKTKANGPVYETVQR--TDKLFSSIATARGQKYNSSIWSPNKKSAEQDAAIVALRKSNLW  443 (477)
T ss_pred             CCCHHHHHHHhhhhhcCCCcchhhhhh--hhhhhHHHhhhhhhhhhccccCcchhhHHHHHHHHHHHhcCcc
Confidence            468999999999999999999999985  46889999999998888764 5999999999999999877654

>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases

Probab=89.32  E-value=0.99  Score=36.60  Aligned_cols=64  Identities=14%  Similarity=0.053  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHcCCC-----CCceEEeccCCCCCCceEEEEEECc-----eEEeCCCCCCchHHHHHHHHHHHHHHHHhhh
Q 018960            3 KNRLQEHAQRSGIP-----LPVYQSHNEGFQHAPKFRASVSVDG-----VTYTSPNTFSHRKAAEQDVAKIALECISKKI   72 (348)
Q Consensus         3 KS~LqE~~QK~g~~-----LP~Y~lv~~Gp~H~~~Ft~SV~vDG-----aiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~   72 (348)
                      ++.|+.||+++..+     .|.|.+...+.    .|.++|.+-.     .+.+.  ...||+.||+.||-.|...|.+..
T Consensus         2 i~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~----~~~c~v~LP~~~pi~~i~g~--~~~sk~~AK~sAAf~Ac~~L~~~g   75 (90)
T PF03368_consen    2 ISLLNRYCSTLPSDSFTNLKPEFEIEKIGS----GFICTVILPINSPIRSIEGP--PMRSKKLAKRSAAFEACKKLHEAG   75 (90)
T ss_dssp             HHHHHHHHTTSSS-TT--SS-EEEEEE--G-----EEEEEE--TT-SS--EEEE----SSHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHhcCCCCCCccCCceEEEEEcCC----cEEEEEECCCCCCCCeEEcc--ccccHHHHHHHHHHHHHHHHHHcC
Confidence            57899999997642     47777766443    7888888751     12222  456899999999999999998865

This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]

Probab=88.49  E-value=0.65  Score=52.06  Aligned_cols=67  Identities=24%  Similarity=0.261  Sum_probs=56.5

Q ss_pred             ChhHHHHHHHHHcCCCCCcEEEeecCC-CCCcEEEEEEECCEEee-eeecCCHHHHHHHHHHHHHHHHHh
Q 018960           86 FCKSILNEFAVKMNLELPAYSTRQSEA-LLPVFVSSLVFNGVTYT-GEPGRSKKEAEQLAARAVIRTLLV  153 (348)
Q Consensus        86 npKs~LQE~cQk~~~~~P~Y~~v~epg-H~~~F~v~V~I~g~~~~-~G~G~SKKeAKq~AA~~AL~~L~~  153 (348)
                      |-|..|-.||.++.+. |.|.+-.+.+ ....|.|.|.+.+..+. .|...+||+|+.+||+.-.+.|-.
T Consensus         2 d~k~fly~~~~k~~~~-p~~d~~~~~~~~rqrf~ce~~~~~~~~~~~~~stnkKda~knac~dfv~ylvr   70 (1282)
T KOG0921|consen    2 DVKEFLYAWLGKNKYG-PTYDIRSEGRKGRQRFLCEVRVEGFGYTAVGNSTNKKDAATNAAQDFCQYLVR   70 (1282)
T ss_pred             cHHHHHHHHHhhhccC-cceehhhhcccchhheeeeeeccCCcceeeecccccchhhHHHHHHHHHHhhh
Confidence            5578899999999998 7999888744 55579999999886655 477888999999999999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	348
2l2n_A	103	Backbone 1h, 13c, And 15n Chemical Shift Assignment		1e-10
3adg_A	73	Structure Of Arabidopsis Hyl1 And Its Molecular Imp		1e-10
2l2m_A	77	Solution Structure Of The Second Dsrbd Of Hyl1 Leng		4e-07
3adj_A	76	Structure Of Arabidopsis Hyl1 And Its Molecular Imp		9e-07

>pdb|2L2N|A Chain A, Backbone 1h, 13c, And 15n Chemical Shift Assignments For The First Dsrbd Of Protein Hyl1 Length = 103

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 49/77 (63%)
Query: 1  MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 60
          + K+RLQE+AQ+  +P PVY+   EG  H   F+++V +DGV Y S   F +RKAAEQ  
Sbjct: 18 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSA 77
Query: 61 AKIALECISKKIKDEGC 77
          A++AL  ++K  +   C
Sbjct: 78 AEVALRELAKSSELSQC 94

>pdb|3ADG|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular Implications For Mirna Processing Length = 73

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 47/70 (67%)
Query: 1  MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 60
          + K+RLQE+AQ+  +P PVY+   EG  H   F+++V +DGV Y S   F +RKAAEQ  
Sbjct: 4  VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSA 63
Query: 61 AKIALECISK 70
          A++AL  ++K
Sbjct: 64 AEVALRELAK 73

>pdb|2L2M|A Chain A, Solution Structure Of The Second Dsrbd Of Hyl1 Length = 77

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 83  DTVFCKSILNEFAVKMNLELPAYSTRQSEALLPV--FVSSLVFNGVTYTGEPGRSKKEAE 140
           +T  CK++L E+A KMN  +P Y  ++ E L  V  F  ++   G+ YTG   R+KK+AE
Sbjct: 5   ETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAE 64
Query: 141 QLAARAVI 148
             A R  +
Sbjct: 65  ISAGRTAL 72

>pdb|3ADJ|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular Implications For Mirna Processing Length = 76

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 86  FCKSILNEFAVKMNLELPAYSTRQSEALLPV--FVSSLVFNGVTYTGEPGRSKKEAEQLA 143
            CK++L E+A KMN  +P Y  ++ E L  V  F  ++   G+ YTG   R+KK+AE  A
Sbjct: 5   LCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISA 64
Query: 144 ARAVI 148
            R  +
Sbjct: 65  GRTAL 69

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	348
1qu6_A	179	Protein kinase PKR; dsRNA-binding domain, solution	1e-33
1qu6_A	179	Protein kinase PKR; dsRNA-binding domain, solution	7e-10
1qu6_A	179	Protein kinase PKR; dsRNA-binding domain, solution	2e-08
3adg_A	73	F21M12.9 protein; HYL1, miRNA processing mechanism	7e-24
3adg_A	73	F21M12.9 protein; HYL1, miRNA processing mechanism	4e-10
2l2n_A	103	Hyponastic leave 1; DSRBD, miRNA, RNA binding prot	1e-22
2l2n_A	103	Hyponastic leave 1; DSRBD, miRNA, RNA binding prot	9e-11
3adj_A	76	F21M12.9 protein; HYL1, miRNA processing, RNA bind	7e-21
3adj_A	76	F21M12.9 protein; HYL1, miRNA processing, RNA bind	7e-16
1whn_A	128	Hypothetical protein riken cDNA 2310016K04; double	2e-15
1whn_A	128	Hypothetical protein riken cDNA 2310016K04; double	3e-13
2nug_A	221	Ribonuclease III, RNAse III; dsRNA, RNA interferen	8e-13
2nug_A	221	Ribonuclease III, RNAse III; dsRNA, RNA interferen	8e-10
2a11_A	242	Ribonuclease III, RNAse III; nuclease domain, stru	1e-12
2a11_A	242	Ribonuclease III, RNAse III; nuclease domain, stru	3e-08
1o0w_A	252	Ribonuclease III, RNAse III; TM1102, structural ge	1e-12
1o0w_A	252	Ribonuclease III, RNAse III; TM1102, structural ge	7e-08
3n3w_A	248	Ribonuclease III; nuclease domain, ribonuclase III	2e-11
3n3w_A	248	Ribonuclease III; nuclease domain, ribonuclase III	1e-07
1x47_A	98	DGCR8 protein; structural genomics, DSRM domain, N	2e-11
1x47_A	98	DGCR8 protein; structural genomics, DSRM domain, N	4e-08
2cpn_A	89	TAR RNA-binding protein 2; double-stranded RNA bin	4e-11
2cpn_A	89	TAR RNA-binding protein 2; double-stranded RNA bin	1e-07
1x49_A	97	Interferon-induced, double-stranded RNA- activated	4e-11
1x49_A	97	Interferon-induced, double-stranded RNA- activated	3e-07
1whq_A	99	RNA helicase A; double-stranded RNA binding domain	7e-11
1whq_A	99	RNA helicase A; double-stranded RNA binding domain	1e-07
3adl_A	88	RISC-loading complex subunit tarbp2; TRBP2, miRNA	8e-11
3adl_A	88	RISC-loading complex subunit tarbp2; TRBP2, miRNA	2e-08
1di2_A	69	XLRBPA, double stranded RNA binding protein A; pro	8e-11
1di2_A	69	XLRBPA, double stranded RNA binding protein A; pro	7e-09
1uhz_A	89	Staufen (RNA binding protein) homolog 2; DSRM, sta	2e-10
1uhz_A	89	Staufen (RNA binding protein) homolog 2; DSRM, sta	2e-08
2yt4_A	232	Protein DGCR8; DSRBD, RNA binding domain, RNA bind	8e-10
2yt4_A	232	Protein DGCR8; DSRBD, RNA binding domain, RNA bind	4e-08
2dix_A	84	Interferon-inducible double stranded RNA- dependen	1e-09
2dix_A	84	Interferon-inducible double stranded RNA- dependen	4e-09
3llh_A	90	RISC-loading complex subunit tarbp2; DSRBD, DSRM,	4e-09
3llh_A	90	RISC-loading complex subunit tarbp2; DSRBD, DSRM,	4e-08
1ekz_A	76	DSRBDIII, maternal effect protein (staufen); struc	8e-09
1ekz_A	76	DSRBDIII, maternal effect protein (staufen); struc	3e-08
2khx_A	85	Ribonuclease 3; drosha, RNA binding domain, hydrol	9e-09
2khx_A	85	Ribonuclease 3; drosha, RNA binding domain, hydrol	7e-06
3rv0_A	341	K. polysporus DCR1; RNAse III enzyme, RNA binding	2e-08
3rv0_A	341	K. polysporus DCR1; RNAse III enzyme, RNA binding	6e-08
2b7v_A	71	Double-stranded RNA-specific editase 1; RNA editin	3e-08
2b7v_A	71	Double-stranded RNA-specific editase 1; RNA editin	8e-05
3p1x_A	75	Interleukin enhancer-binding factor 3; structural	5e-08
3p1x_A	75	Interleukin enhancer-binding factor 3; structural	2e-05
2l33_A	91	Interleukin enhancer-binding factor 3; structural	5e-07
2l33_A	91	Interleukin enhancer-binding factor 3; structural	1e-05
2b7t_A	73	Double-stranded RNA-specific editase 1; RNA editin	6e-07
2b7t_A	73	Double-stranded RNA-specific editase 1; RNA editin	4e-05
2dmy_A	97	Spermatid perinuclear RNA-binding protein; DSRM do	1e-06
2dmy_A	97	Spermatid perinuclear RNA-binding protein; DSRM do	2e-04
3c4b_A	265	Endoribonuclease dicer; RNAse, dsRNA binding prote	7e-06
3c4b_A	265	Endoribonuclease dicer; RNAse, dsRNA binding prote	6e-04
2ljh_A	114	Double-stranded RNA-specific editase ADAR; DSRBD,	2e-05
2ljh_A	114	Double-stranded RNA-specific editase ADAR; DSRBD,	5e-05
1uil_A	113	Double-stranded RNA-binding motif; structural geno	1e-04
2l3j_A	236	Double-stranded RNA-specific editase 1; editing, d	1e-04
2l3j_A	236	Double-stranded RNA-specific editase 1; editing, d	4e-04
1x48_A	88	Interferon-induced, double-stranded RNA- activated	2e-04
2qvw_A	756	GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral	6e-04

>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 Length = 179

 Score =  121 bits (306), Expect = 1e-33
 Identities = 35/157 (22%), Positives = 59/157 (37%), Gaps = 8/157 (5%)

Query: 2   HKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 61
               L  + Q+ G+ L   +  N G  H  +F   V +DG  +      S +K A+   A
Sbjct: 15  FMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRS-KKEAKNAAA 73

Query: 62  KIALECISKKIKDEGCPLINQD-------TVFCKSILNEFAVKMNLELPAYSTRQSEALL 114
           K+A+E ++K+ K     L+                ++N  A K  L +            
Sbjct: 74  KLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTVNYEQCASGVHGP 133

Query: 115 PVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 151
             F          Y+   G +K+EA+QLAA+     +
Sbjct: 134 EGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQI 170

>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 Length = 179

 Score = 56.8 bits (137), Expect = 7e-10
 Identities = 23/106 (21%), Positives = 38/106 (35%), Gaps = 1/106 (0%)

Query: 83  DTVFCKSILNEFAVKMNLELPAYSTRQS-EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQ 141
              F    LN +  K  + L       S       F   ++ +G  +    GRSKKEA+ 
Sbjct: 11  SAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKN 70

Query: 142 LAARAVIRTLLVTSGSATILSEIIKSKGKLYAALNKVKESNYSTQK 187
            AA+  +  L     + + L     +  +  +  N +   N   QK
Sbjct: 71  AAAKLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIGLINRIAQK 116

>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 Length = 179

 Score = 52.6 bits (126), Expect = 2e-08
 Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 2/77 (2%)

Query: 1   MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 60
            +   +   AQ+  + +  Y+    G      F     +    Y+     + ++ A+Q  
Sbjct: 105 NYIGLINRIAQKKRLTVN-YEQCASGVHGPEGFHYKCKMGQKEYSIGTGST-KQEAKQLA 162

Query: 61  AKIALECISKKIKDEGC 77
           AK+A   I  +    GC
Sbjct: 163 AKLAYLQILSEETGSGC 179

>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A Length = 73

 Score = 92.3 bits (230), Expect = 7e-24
 Identities = 32/70 (45%), Positives = 47/70 (67%)

Query: 1  MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 60
          + K+RLQE+AQ+  +P PVY+   EG  H   F+++V +DGV Y S   F +RKAAEQ  
Sbjct: 4  VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSA 63

Query: 61 AKIALECISK 70
          A++AL  ++K
Sbjct: 64 AEVALRELAK 73

>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A Length = 73

 Score = 54.2 bits (131), Expect = 4e-10
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 2/66 (3%)

Query: 88  KSILNEFAVKMNLELPAYS-TRQSEALLPVFVSSLVFNGVTY-TGEPGRSKKEAEQLAAR 145
           KS L E+A K  L  P Y   ++  +   +F S+++ +GV Y +     ++K AEQ AA 
Sbjct: 6   KSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAE 65

Query: 146 AVIRTL 151
             +R L
Sbjct: 66  VALREL 71

>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana} Length = 103

 Score = 89.9 bits (223), Expect = 1e-22
 Identities = 33/77 (42%), Positives = 49/77 (63%)

Query: 1  MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 60
          + K+RLQE+AQ+  +P PVY+   EG  H   F+++V +DGV Y S   F +RKAAEQ  
Sbjct: 18 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSA 77

Query: 61 AKIALECISKKIKDEGC 77
          A++AL  ++K  +   C
Sbjct: 78 AEVALRELAKSSELSQC 94

>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana} Length = 103

 Score = 57.1 bits (138), Expect = 9e-11
 Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 2/84 (2%)

Query: 88  KSILNEFAVKMNLELPAYS-TRQSEALLPVFVSSLVFNGVTY-TGEPGRSKKEAEQLAAR 145
           KS L E+A K  L  P Y   ++  +   +F S+++ +GV Y +     ++K AEQ AA 
Sbjct: 20  KSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAE 79

Query: 146 AVIRTLLVTSGSATILSEIIKSKG 169
             +R L  +S  +  +S+ +   G
Sbjct: 80  VALRELAKSSELSQCVSQPVHETG 103

>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A Length = 76

 Score = 84.3 bits (209), Expect = 7e-21
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 2/71 (2%)

Query: 83  DTVFCKSILNEFAVKMNLELPAYSTRQSE--ALLPVFVSSLVFNGVTYTGEPGRSKKEAE 140
               CK++L E+A KMN  +P Y  ++ E    +  F  ++   G+ YTG   R+KK+AE
Sbjct: 2   SHGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAE 61

Query: 141 QLAARAVIRTL 151
             A R  +  +
Sbjct: 62  ISAGRTALLAI 72

>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A Length = 76

 Score = 70.8 bits (174), Expect = 7e-16
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 1  MHKNRLQEHAQRSGIPLPVYQS-HNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQD 59
          + KN LQE+AQ+    +P+YQ    E      +F  +V + G+ YT   T + +K AE  
Sbjct: 5  LCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRT-KKDAEIS 63

Query: 60 VAKIALECI 68
            + AL  I
Sbjct: 64 AGRTALLAI 72

>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 Length = 128

 Score = 71.1 bits (174), Expect = 2e-15
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 3  KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAK 62
          K  L E  +R  +P PVY++          F + V+V    Y S      +K AEQ  A 
Sbjct: 29 KMCLLEWCRREKLPQPVYETVQRT--IDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAI 86

Query: 63 IALE 66
          + L 
Sbjct: 87 VCLR 90

>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 Length = 128

 Score = 64.9 bits (158), Expect = 3e-13
 Identities = 25/111 (22%), Positives = 42/111 (37%), Gaps = 11/111 (9%)

Query: 53  RKAAEQDVAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEA 112
             ++   + K+A+    +    +  P         K  L E+  +  L  P Y T Q   
Sbjct: 3   SGSSGSGIIKMAIRFDRRAYPPQITP---------KMCLLEWCRREKLPQPVYETVQ-RT 52

Query: 113 LLPVFVSSLVFNGVTY-TGEPGRSKKEAEQLAARAVIRTLLVTSGSATILS 162
           +  +F S +      Y +    +SKK AEQ AA   +R+  +  G     S
Sbjct: 53  IDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIVCLRSQGLPEGRLGEES 103

>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A Length = 221

 Score = 66.0 bits (162), Expect = 8e-13
 Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 3/71 (4%)

Query: 2   HKNRLQEHAQRSGIPLPVYQ-SHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 60
           +K  LQE  Q+     P Y+    EG  H  KF     +             +K AEQ  
Sbjct: 152 YKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLG--EGKSKKEAEQRA 209

Query: 61  AKIALECISKK 71
           A+  ++ + + 
Sbjct: 210 AEELIKLLEES 220

>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A Length = 221

 Score = 57.1 bits (139), Expect = 8e-10
 Identities = 29/95 (30%), Positives = 38/95 (40%), Gaps = 5/95 (5%)

Query: 61  AKIALECISKKIKDEGCPLINQDTVFC--KSILNEFAVKMNLELPAYST--RQSEALLPV 116
           A    E   K  K++    I +  V    K+IL E   K   E P Y     +       
Sbjct: 124 ANFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISVEGPHHKKK 183

Query: 117 FVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 151
           F+           GE G+SKKEAEQ AA  +I+ L
Sbjct: 184 FIVEAKIKEYRTLGE-GKSKKEAEQRAAEELIKLL 217

>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} Length = 242

 Score = 65.7 bits (161), Expect = 1e-12
 Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 3/77 (3%)

Query: 2   HKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 61
            K  LQE     G+  P Y   + G  H  +F A V V    Y S    S +K AEQ  A
Sbjct: 164 WKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGSGVGRS-KKEAEQKAA 222

Query: 62  KIALECISKKIKDEGCP 78
             A + +  ++ D   P
Sbjct: 223 AAAWKAL--EVLDNAMP 237

>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} Length = 242

 Score = 52.6 bits (127), Expect = 3e-08
 Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 6/94 (6%)

Query: 60  VAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQS-EALLPVFV 118
             ++ L      +          D    K+ L E      L  P+Y    +       F 
Sbjct: 140 AREVILRLFGPLLDAAPTLGAGLD---WKTSLQELTAARGLGAPSYLVTSTGPDHDKEFT 196

Query: 119 SSLVFNGVTY-TGEPGRSKKEAEQLAARAVIRTL 151
           + +V     Y +G  GRSKKEAEQ AA A  + L
Sbjct: 197 AVVVVMDSEYGSGV-GRSKKEAEQKAAAAAWKAL 229

>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 Length = 252

 Score = 65.7 bits (161), Expect = 1e-12
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 2   HKNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 60
           +K  LQE  Q      P Y             F   V V+G T  +    + +K AE++ 
Sbjct: 181 YKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRT-KKEAEKEA 239

Query: 61  AKIALECISKK 71
           A+IA E + K+
Sbjct: 240 ARIAYEKLLKE 250

>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 Length = 252

 Score = 51.8 bits (125), Expect = 7e-08
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 7/95 (7%)

Query: 60  VAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSE--ALLPVF 117
           + ++  +     I+      +  D    K+ L E     +   P Y   ++E      +F
Sbjct: 157 IKELFEQEFEFYIEKIMKGEMLFD---YKTALQEIVQSEHKVPPEYILVRTEKNDGDRIF 213

Query: 118 VSSLVFNGVTY-TGEPGRSKKEAEQLAARAVIRTL 151
           V  +  NG T  TG+ GR+KKEAE+ AAR     L
Sbjct: 214 VVEVRVNGKTIATGK-GRTKKEAEKEAARIAYEKL 247

>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} Length = 248

 Score = 62.2 bits (152), Expect = 2e-11
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 2   HKNRLQEHAQRSGIPLPVYQ-SHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 60
           +K +LQE  Q      P Y+     G  H  +F  ++ +DG         S +K A+Q  
Sbjct: 179 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGS-KKEAQQMA 237

Query: 61  AKIALECISK 70
           AKIALE +  
Sbjct: 238 AKIALEKLGA 247

>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} Length = 248

 Score = 51.0 bits (123), Expect = 1e-07
 Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 5/94 (5%)

Query: 60  VAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSE--ALLPVF 117
              IAL  I K        ++ +D    K+ L E       + P Y T ++     L  F
Sbjct: 155 AKTIALRLIEKNFPQIDAKILIKD---YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQF 211

Query: 118 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 151
             +L+ +G         SKKEA+Q+AA+  +  L
Sbjct: 212 EIALMLDGKELARAIAGSKKEAQQMAAKIALEKL 245

>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 98

 Score = 58.7 bits (142), Expect = 2e-11
 Identities = 21/65 (32%), Positives = 33/65 (50%)

Query: 88  KSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAV 147
             IL+E+  ++    P Y+  + E     F +S+  +GVTY      SKK A+  AARA 
Sbjct: 19  VCILHEYMQRVLKVRPVYNFFECENPSEPFGASVTIDGVTYGSGTASSKKLAKNKAARAT 78

Query: 148 IRTLL 152
           +  L+
Sbjct: 79  LEILI 83

>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 98

 Score = 49.8 bits (119), Expect = 4e-08
 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 2/73 (2%)

Query: 3  KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAK 62
             L E+ QR     PVY         +  F ASV++DGVTY S    S +K A+   A+
Sbjct: 19 VCILHEYMQRVLKVRPVYNFFECE-NPSEPFGASVTIDGVTYGSGTASS-KKLAKNKAAR 76

Query: 63 IALECISKKIKDE 75
            LE +      +
Sbjct: 77 ATLEILIPDFVKQ 89

>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 89

 Score = 57.7 bits (140), Expect = 4e-11
 Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 3/70 (4%)

Query: 3  KNRLQEHAQRSGIPLPVYQ-SHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 61
             LQE   + G  LP Y  +   G  H  +F  +  V+        + + +K A+++ A
Sbjct: 19 VGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIG--SGTSKKLAKRNAA 76

Query: 62 KIALECISKK 71
             L  +S  
Sbjct: 77 AKMLLRVSGP 86

>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 89

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 88  KSILNEFAVKMNLELPAYSTRQSE--ALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAAR 145
              L E  V+    LP Y+  Q    A    F  +         G  G SKK A++ AA 
Sbjct: 19  VGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGS-GTSKKLAKRNAAA 77

Query: 146 AVIRTL 151
            ++  +
Sbjct: 78  KMLLRV 83

>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 Length = 97

 Score = 57.8 bits (140), Expect = 4e-11
 Identities = 14/74 (18%), Positives = 33/74 (44%), Gaps = 1/74 (1%)

Query: 2  HKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 61
          + ++L ++ Q  G+ +   +    G  H  +F   V +D   +      S ++ A    A
Sbjct: 16 YMDKLNKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRS-KQEARNAAA 74

Query: 62 KIALECISKKIKDE 75
          K+A++ +  + K +
Sbjct: 75 KLAVDILDNENKVD 88

>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 Length = 97

 Score = 47.4 bits (113), Expect = 3e-07
 Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 1/74 (1%)

Query: 79  LINQDTVFCKSILNEFAVKMNLELPAYSTRQS-EALLPVFVSSLVFNGVTYTGEPGRSKK 137
           + +    F    LN++     + +       S       F   ++ +   +    GRSK+
Sbjct: 8   MASDTPGFYMDKLNKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQ 67

Query: 138 EAEQLAARAVIRTL 151
           EA   AA+  +  L
Sbjct: 68  EARNAAAKLAVDIL 81

>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A Length = 99

 Score = 57.6 bits (139), Expect = 7e-11
 Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 3/78 (3%)

Query: 3  KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAK 62
          KN L     +  +  P Y+    G ++  KF   V V+G  Y      +++K A+ + A+
Sbjct: 9  KNFLYAWCGKRKMT-PAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAAR 67

Query: 63 IALECISK--KIKDEGCP 78
            +  + +  ++K E  P
Sbjct: 68 DFVNYLVRINEVKSEEVP 85

>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A Length = 99

 Score = 48.3 bits (115), Expect = 1e-07
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 3/67 (4%)

Query: 88  KSILNEFAVKMNLELPAYSTRQS-EALLPVFVSSLVFNGVTYTGE-PGRSKKEAEQLAAR 145
           K+ L  +  K  +  PAY  R         F+  +   G  Y G     +KK+A+  AAR
Sbjct: 9   KNFLYAWCGKRKMT-PAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAAR 67

Query: 146 AVIRTLL 152
             +  L+
Sbjct: 68  DFVNYLV 74

>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens} Length = 88

 Score = 56.9 bits (138), Expect = 8e-11
 Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 3/69 (4%)

Query: 3  KNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 61
             LQE   + G  LP Y    E G  H  +F  +  V+        + + +K A+++ A
Sbjct: 18 VGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIG--SGTSKKLAKRNAA 75

Query: 62 KIALECISK 70
             L  +  
Sbjct: 76 AKMLLRVHT 84

>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens} Length = 88

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 88  KSILNEFAVKMNLELPAYSTRQSE--ALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAAR 145
              L E  V+    LP Y+  Q    A    F  +         G  G SKK A++ AA 
Sbjct: 18  VGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGS-GTSKKLAKRNAAA 76

Query: 146 AVIRTL 151
            ++  +
Sbjct: 77  KMLLRV 82

>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1 Length = 69

 Score = 56.4 bits (137), Expect = 8e-11
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 3  KNRLQEHAQRSGIPLPVYQ-SHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 61
             LQE A + G  LP Y  +   G  H  +F  +  V+    T   + + ++ A++  A
Sbjct: 3  VGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVETG--SGTSKQVAKRVAA 60

Query: 62 KIALE 66
          +  L 
Sbjct: 61 EKLLT 65

>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1 Length = 69

 Score = 51.0 bits (123), Expect = 7e-09
 Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 88  KSILNEFAVKMNLELPAYST--RQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAAR 145
              L E AV+    LP Y+            F  +        TG  G SK+ A+++AA 
Sbjct: 3   VGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVETGS-GTSKQVAKRVAAE 61

Query: 146 AVIRTL 151
            ++   
Sbjct: 62  KLLTKF 67

>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 Length = 89

 Score = 55.8 bits (135), Expect = 2e-10
 Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 7/72 (9%)

Query: 3  KNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASVSVDGVTY--TSPNTFSHRKAAEQD 59
           +RL +  Q      P Y   +E G     +F   V V       T PN    +K A+++
Sbjct: 9  ISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGTGPN----KKIAKKN 64

Query: 60 VAKIALECISKK 71
           A+  L  +  K
Sbjct: 65 AAEAMLLQLGYK 76

>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 Length = 89

 Score = 50.0 bits (120), Expect = 2e-08
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 3/66 (4%)

Query: 88  KSILNEFAVKMNLELPAYS--TRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAAR 145
            S L +       + P Y   + +       FV  +       TG  G +KK A++ AA 
Sbjct: 9   ISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGT-GPNKKIAKKNAAE 67

Query: 146 AVIRTL 151
           A++  L
Sbjct: 68  AMLLQL 73

>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens} Length = 232

 Score = 57.5 bits (138), Expect = 8e-10
 Identities = 38/175 (21%), Positives = 58/175 (33%), Gaps = 29/175 (16%)

Query: 3   KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAK 62
              L E+ QR     PVY         +  F ASV++DGVTY S    S +K A+   A+
Sbjct: 25  VCILHEYMQRVLKVRPVYNFFECE-NPSEPFGASVTIDGVTYGSGTASS-KKLAKNKAAR 82

Query: 63  IALE---------CISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELP---------- 103
             LE            +K KD              S + E   K  L  P          
Sbjct: 83  ATLEILIPDFVKQTSEEKPKDSEELEYFNHISIEDSRVYELTSKAGLLSPYQILHECLKR 142

Query: 104 -------AYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 151
                  +                +     T  G   ++K+  +QLA++ +++ L
Sbjct: 143 NHGMGDTSIKFEVVPGKNQKSEYVMACGKHTVRGW-CKNKRVGKQLASQKILQLL 196

>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens} Length = 232

 Score = 52.4 bits (125), Expect = 4e-08
 Identities = 21/65 (32%), Positives = 33/65 (50%)

Query: 88  KSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAV 147
             IL+E+  ++    P Y+  + E     F +S+  +GVTY      SKK A+  AARA 
Sbjct: 25  VCILHEYMQRVLKVRPVYNFFECENPSEPFGASVTIDGVTYGSGTASSKKLAKNKAARAT 84

Query: 148 IRTLL 152
           +  L+
Sbjct: 85  LEILI 89

>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 84

 Score = 53.1 bits (128), Expect = 1e-09
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 4/66 (6%)

Query: 88  KSILNEFAVKMNLELPAYSTRQSE--ALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAAR 145
             +L+E+ +K    +P Y   +S+    +P F   +    +T TGE G SKK A+  AA 
Sbjct: 11  IQVLHEYGMKTKN-IPVYECERSDVQIHVPTFTFRVTVGDITCTGE-GTSKKLAKHRAAE 68

Query: 146 AVIRTL 151
           A I  L
Sbjct: 69  AAINIL 74

>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 84

 Score = 51.9 bits (125), Expect = 4e-09
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 3  KNRLQEHAQRSGIPLPVYQS-HNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 61
             L E+  ++   +PVY+   ++   H P F   V+V  +T T     + +K A+   A
Sbjct: 11 IQVLHEYGMKTKN-IPVYECERSDVQIHVPTFTFRVTVGDITCTG--EGTSKKLAKHRAA 67

Query: 62 KIALECISKK 71
          + A+  +   
Sbjct: 68 EAAINILKAN 77

>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens} Length = 90

 Score = 52.3 bits (126), Expect = 4e-09
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 3  KNRLQEHAQRSGIPLPVYQS-HNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 61
           + LQE+  R G   PVY     EG  H P F   V+V   + T       +KAA+   A
Sbjct: 17 ISLLQEYGTRIG-KTPVYDLLKAEGQAHQPNFTFRVTVGDTSCTG--QGPSKKAAKHKAA 73

Query: 62 KIALECISKK 71
          ++AL+ +   
Sbjct: 74 EVALKHLKGG 83

>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens} Length = 90

 Score = 49.6 bits (119), Expect = 4e-08
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 88  KSILNEFAVKMNLELPAYSTRQSE--ALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAAR 145
            S+L E+  ++    P Y   ++E  A  P F   +     + TG+ G SKK A+  AA 
Sbjct: 17  ISLLQEYGTRIGK-TPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQ-GPSKKAAKHKAAE 74

Query: 146 AVIRTL 151
             ++ L
Sbjct: 75  VALKHL 80

>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A Length = 76

 Score = 50.8 bits (122), Expect = 8e-09
 Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 4/66 (6%)

Query: 88  KSILNEFAVKMNLELPAYSTRQSE--ALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAAR 145
            S ++E  +K N+    +   + E  A +  F+++ +   +   GE G  KK +++ AA 
Sbjct: 10  ISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGSIVTEGE-GNGKKVSKKRAAE 67

Query: 146 AVIRTL 151
            ++  L
Sbjct: 68  KMLVEL 73

>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A Length = 76

 Score = 49.3 bits (118), Expect = 3e-08
 Identities = 10/69 (14%), Positives = 26/69 (37%), Gaps = 4/69 (5%)

Query: 3  KNRLQEHAQRSGIPLPVYQ-SHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 61
           +++ E   +  +    ++    EG  H   F  +  V  +        + +K +++  A
Sbjct: 10 ISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGSIVTEG--EGNGKKVSKKRAA 66

Query: 62 KIALECISK 70
          +  L  + K
Sbjct: 67 EKMLVELQK 75

>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens} Length = 85

 Score = 51.2 bits (123), Expect = 9e-09
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 7/71 (9%)

Query: 2  HKNRLQEHA-----QRSGIPLPVYQS-HNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKA 55
           K++LQ+       +     +P+Y++    G  HA  +  +V   G         S  + 
Sbjct: 3  PKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPS-IQQ 61

Query: 56 AEQDVAKIALE 66
          AE   A  ALE
Sbjct: 62 AEMGAAMDALE 72

>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens} Length = 85

 Score = 42.7 bits (101), Expect = 7e-06
 Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 88  KSILNEFAVKMNL-----ELPAYSTRQSE--ALLPVFVSSLVFNGVTY-TGEPGRSKKEA 139
           KS L +  + +       ++P Y T Q+   +    +  ++ F G     G+ G S ++A
Sbjct: 4   KSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGK-GPSIQQA 62

Query: 140 EQLAARAVIRTL 151
           E  AA   +   
Sbjct: 63  EMGAAMDALEKY 74

>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} Length = 341

 Score = 54.4 bits (131), Expect = 2e-08
 Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 5/72 (6%)

Query: 2   HKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 61
            KN L E  Q + +   ++          P FR  V +  +        S  + AE   A
Sbjct: 256 AKNELAELLQINKLGHKLH---YRKLTEMPPFRVEVKIGDILLDEAEGNS-IREAEHRAA 311

Query: 62  KIALECISKKIK 73
              LE   + ++
Sbjct: 312 MKVLEND-ELLR 322

>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} Length = 341

 Score = 52.9 bits (127), Expect = 6e-08
 Identities = 18/99 (18%), Positives = 39/99 (39%), Gaps = 7/99 (7%)

Query: 54  KAAEQDVAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEAL 113
              ++ + +++ + ++K  +      +N++    K+ L E      L    +  + +E  
Sbjct: 226 LDIKEWLEELSEKKLAKSSQMVIKEPLNKN---AKNELAELLQINKLGHKLHYRKLTEM- 281

Query: 114 LPVFVSSLVFNGVTY-TGEPGRSKKEAEQLAARAVIRTL 151
            P F   +    +     E G S +EAE  AA  V+   
Sbjct: 282 -PPFRVEVKIGDILLDEAE-GNSIREAEHRAAMKVLEND 318

>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B Length = 71

 Score = 49.2 bits (118), Expect = 3e-08
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 4/65 (6%)

Query: 88  KSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAV 147
             ILNE    +  +     + +S A    FV S+V +G  + G  GR+KK A+  AA++ 
Sbjct: 7   VMILNELRPGLKYDFL-SESGESHA--KSFVMSVVVDGQFFEGS-GRNKKLAKARAAQSA 62

Query: 148 IRTLL 152
           + T+ 
Sbjct: 63  LATVF 67

>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B Length = 71

 Score = 39.6 bits (93), Expect = 8e-05
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 6/48 (12%)

Query: 23 HNEGFQHAPKFRASVSVDGVTYTS--PNTFSHRKAAEQDVAKIALECI 68
             G  HA  F  SV VDG  +     N    +K A+   A+ AL  +
Sbjct: 23 SESGESHAKSFVMSVVVDGQFFEGSGRN----KKLAKARAAQSALATV 66

>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens} Length = 75

 Score = 48.4 bits (116), Expect = 5e-08
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 88  KSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAV 147
              LNE    +  EL + +    +     FV  +  +G  + G  G +KK A+  AA A 
Sbjct: 10  VMELNEKRRGLKYELISETGGSHD---KRFVMEVEVDGQKFQGA-GSNKKVAKAYAALAA 65

Query: 148 IRTLL 152
           +  L 
Sbjct: 66  LEKLF 70

>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens} Length = 75

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 12/71 (16%)

Query: 3  KNRLQEHAQRSGIPLPVYQ-SHNEGFQHAPKFRASVSVDGVTY--TSPNTFSHRKAAEQD 59
             L E  +R G+    Y+     G  H  +F   V VDG  +     N    +K A+  
Sbjct: 10 VMELNE--KRRGL---KYELISETGGSHDKRFVMEVEVDGQKFQGAGSN----KKVAKAY 60

Query: 60 VAKIALECISK 70
           A  ALE +  
Sbjct: 61 AALAALEKLFP 71

>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens} Length = 91

 Score = 46.3 bits (110), Expect = 5e-07
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 115 PVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 151
             FV  +  +G  + G  G +KK A+  AA A +  L
Sbjct: 44  KRFVMEVEVDGQKFQGA-GSNKKVAKAYAALAALEKL 79

>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens} Length = 91

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 9/72 (12%)

Query: 3  KNRLQEHAQRSGIPLPVYQ-SHNEGFQHAPKFRASVSVDGVTY--TSPNTFSHRKAAEQD 59
          KN + E  ++       Y+     G  H  +F   V VDG  +     N    +K A+  
Sbjct: 17 KNPVMELNEKR--RGLKYELISETGGSHDKRFVMEVEVDGQKFQGAGSN----KKVAKAY 70

Query: 60 VAKIALECISKK 71
           A  ALE +   
Sbjct: 71 AALAALEKLFPD 82

>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A Length = 73

 Score = 45.3 bits (108), Expect = 6e-07
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 115 PVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLL 152
           P+FV S+  NG  + G  G +KK+A+  AA   +R+ +
Sbjct: 34  PLFVMSVEVNGQVFEGS-GPTKKKAKLHAAEKALRSFV 70

>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A Length = 73

 Score = 40.3 bits (95), Expect = 4e-05
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 3  KNRLQEHAQRSGIPLPVYQ-SHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 61
          KN L +  +    P   Y      G  HAP F  SV V+G  +    +   +K A+   A
Sbjct: 7  KNALMQLNEIK--PGLQYMLLSQTGPVHAPLFVMSVEVNGQVFEG--SGPTKKKAKLHAA 62

Query: 62 KIALECISK 70
          + AL    +
Sbjct: 63 EKALRSFVQ 71

>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 97

 Score = 45.6 bits (108), Expect = 1e-06
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 115 PVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSE 163
           PVF  S+  +G TY    G SKK A+   A  V++ +   +G    +S 
Sbjct: 46  PVFTMSVDVDGTTYEAS-GPSKKTAKLHVAVKVLQAMGYPTGFDADISG 93

>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 97

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 5/67 (7%)

Query: 3  KNRLQEHAQRSGIPLPVYQ-SHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 61
           N L    Q    P   Y+     G  HAP F  SV VDG TY +  +   +K A+  VA
Sbjct: 19 MNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDGTTYEA--SGPSKKTAKLHVA 74

Query: 62 KIALECI 68
             L+ +
Sbjct: 75 VKVLQAM 81

>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A Length = 265

 Score = 45.9 bits (109), Expect = 7e-06
 Identities = 12/72 (16%), Positives = 24/72 (33%), Gaps = 6/72 (8%)

Query: 1   MHKNRLQEHAQRSGIPLPVYQS-HNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQD 59
           + ++ ++E  +      P           +  K R +V V G         S  + A+  
Sbjct: 198 VPRSPVRELLEM----EPETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRS-YRIAKSA 252

Query: 60  VAKIALECISKK 71
            A+ AL  +   
Sbjct: 253 AARRALRSLKAN 264

>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A Length = 265

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 116 VFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 151
           V V+  V     + G  GRS + A+  AAR  +R+L
Sbjct: 227 VRVTVEVVGKGKFKGV-GRSYRIAKSAAARRALRSL 261

>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster} Length = 114

 Score = 42.6 bits (100), Expect = 2e-05
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 115 PVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLL 152
           P+F  S+  +G  Y G+ GRSKK A   AA   +R+ +
Sbjct: 64  PLFTISVEVDGQKYLGQ-GRSKKVARIEAAATALRSFI 100

>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster} Length = 114

 Score = 41.5 bits (97), Expect = 5e-05
 Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 5/69 (7%)

Query: 3   KNRLQEHAQRSGIPLPVYQ-SHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 61
           KN +    +       +Y+     G  HAP F  SV VDG  Y        +K A  + A
Sbjct: 37  KNTVAMLNELR--HGLIYKLESQTGPVHAPLFTISVEVDGQKYLG--QGRSKKVARIEAA 92

Query: 62  KIALECISK 70
             AL    +
Sbjct: 93  ATALRSFIQ 101

>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A Length = 113

 Score = 40.4 bits (94), Expect = 1e-04
 Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 5/70 (7%)

Query: 3  KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVD----GVTYTSPNTFSHRKAAEQ 58
          K RL ++ Q+  I    Y+    G  H   F A +++     G    +    S++K A Q
Sbjct: 29 KARLNQYFQKEKIQ-GEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQ 87

Query: 59 DVAKIALECI 68
            A   +  +
Sbjct: 88 SCALSLVRQL 97

>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus} Length = 236

 Score = 41.8 bits (97), Expect = 1e-04
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 115 PVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 151
             FV S+V +G  + G  GR+KK A+  AA++ + T+
Sbjct: 188 KSFVMSVVVDGQFFEGS-GRNKKLAKARAAQSALATV 223

>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus} Length = 236

 Score = 40.7 bits (94), Expect = 4e-04
 Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 2/144 (1%)

Query: 115 PVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSEIIKSKGKLYAA 174
           P+FV S+  NG  + G  G +KK+A+  AA   +R+ +    ++     + ++       
Sbjct: 34  PLFVMSVEVNGQVFEGS-GPTKKKAKLHAAEKALRSFVQFPNASEAHLAMGRTLSVNTDF 92

Query: 175 LNKVKESNYSTQKIATSYVPTTAIPKSSSGIHPIPTTPEASVGMHSIPTIPEATAGIHPT 234
            +   +   +      +   +   P           +    V + + P     T    P 
Sbjct: 93  TSDQADFPDTLFNGFETPDKSE-PPFYVGSNGDDSFSSSGDVSLSASPVPASLTQPPLPI 151

Query: 235 PAITEASTGMHPTSAAIEVSTGMH 258
           P      +G +P     E+  G+ 
Sbjct: 152 PPPFPPPSGKNPVMILNELRPGLK 175

>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 Length = 88

 Score = 38.5 bits (89), Expect = 2e-04
 Identities = 18/64 (28%), Positives = 28/64 (43%)

Query: 89  SILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVI 148
            ++N FA K  L +       +  L   F+         Y    G +K+EA+QLAA+   
Sbjct: 10  GLVNSFAQKKKLSVNYEQCEPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAY 69

Query: 149 RTLL 152
           + LL
Sbjct: 70  QKLL 73

>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Length = 756

 Score = 40.7 bits (95), Expect = 6e-04
 Identities = 4/66 (6%), Positives = 12/66 (18%), Gaps = 1/66 (1%)

Query: 2   HKNRLQEHAQRSGIPLPVYQS-HNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 60
              +  +           ++S  +   +       S  V  +              +   
Sbjct: 449 AVTKASKRVCMGEAGAHEFRSLVDYACEQGISVFCSSRVSTMFLERLRDIPAEDMLDWYR 508

Query: 61  AKIALE 66
             I   
Sbjct: 509 LGIQFS 514

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	348
1qu6_A	179	Protein kinase PKR; dsRNA-binding domain, solution	99.96
2yt4_A	232	Protein DGCR8; DSRBD, RNA binding domain, RNA bind	99.94
2l3j_A	236	Double-stranded RNA-specific editase 1; editing, d	99.9
3adj_A	76	F21M12.9 protein; HYL1, miRNA processing, RNA bind	99.78
3adg_A	73	F21M12.9 protein; HYL1, miRNA processing mechanism	99.78
2cpn_A	89	TAR RNA-binding protein 2; double-stranded RNA bin	99.76
1di2_A	69	XLRBPA, double stranded RNA binding protein A; pro	99.76
3adl_A	88	RISC-loading complex subunit tarbp2; TRBP2, miRNA	99.76
1uhz_A	89	Staufen (RNA binding protein) homolog 2; DSRM, sta	99.75
2khx_A	85	Ribonuclease 3; drosha, RNA binding domain, hydrol	99.74
2l2n_A	103	Hyponastic leave 1; DSRBD, miRNA, RNA binding prot	99.73
2dix_A	84	Interferon-inducible double stranded RNA- dependen	99.73
1ekz_A	76	DSRBDIII, maternal effect protein (staufen); struc	99.73
3llh_A	90	RISC-loading complex subunit tarbp2; DSRBD, DSRM,	99.73
1x49_A	97	Interferon-induced, double-stranded RNA- activated	99.72
2nug_A	221	Ribonuclease III, RNAse III; dsRNA, RNA interferen	99.71
1x47_A	98	DGCR8 protein; structural genomics, DSRM domain, N	99.7
2b7t_A	73	Double-stranded RNA-specific editase 1; RNA editin	99.7
1whq_A	99	RNA helicase A; double-stranded RNA binding domain	99.69
1o0w_A	252	Ribonuclease III, RNAse III; TM1102, structural ge	99.69
1whn_A	128	Hypothetical protein riken cDNA 2310016K04; double	99.68
1t4n_A	94	Ribonuclease III; DSRBD, RNA-binding, hydrolase; N	99.68
2dmy_A	97	Spermatid perinuclear RNA-binding protein; DSRM do	99.68
1x48_A	88	Interferon-induced, double-stranded RNA- activated	99.67
1t4o_A	117	Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydro	99.66
1uil_A	113	Double-stranded RNA-binding motif; structural geno	99.65
2l33_A	91	Interleukin enhancer-binding factor 3; structural	99.64
3n3w_A	248	Ribonuclease III; nuclease domain, ribonuclase III	99.64
2a11_A	242	Ribonuclease III, RNAse III; nuclease domain, stru	99.6
1di2_A	69	XLRBPA, double stranded RNA binding protein A; pro	99.59
2ljh_A	114	Double-stranded RNA-specific editase ADAR; DSRBD,	99.59
3adg_A	73	F21M12.9 protein; HYL1, miRNA processing mechanism	99.59
2b7v_A	71	Double-stranded RNA-specific editase 1; RNA editin	99.59
3adj_A	76	F21M12.9 protein; HYL1, miRNA processing, RNA bind	99.55
1qu6_A	179	Protein kinase PKR; dsRNA-binding domain, solution	99.55
2yt4_A	232	Protein DGCR8; DSRBD, RNA binding domain, RNA bind	99.5
3p1x_A	75	Interleukin enhancer-binding factor 3; structural	99.49
2l2n_A	103	Hyponastic leave 1; DSRBD, miRNA, RNA binding prot	99.49
3adl_A	88	RISC-loading complex subunit tarbp2; TRBP2, miRNA	99.48
2cpn_A	89	TAR RNA-binding protein 2; double-stranded RNA bin	99.47
1uhz_A	89	Staufen (RNA binding protein) homolog 2; DSRM, sta	99.46
2khx_A	85	Ribonuclease 3; drosha, RNA binding domain, hydrol	99.44
1ekz_A	76	DSRBDIII, maternal effect protein (staufen); struc	99.44
2dix_A	84	Interferon-inducible double stranded RNA- dependen	99.43
2b7t_A	73	Double-stranded RNA-specific editase 1; RNA editin	99.41
3rv0_A	341	K. polysporus DCR1; RNAse III enzyme, RNA binding	99.41
1x49_A	97	Interferon-induced, double-stranded RNA- activated	99.39
1whq_A	99	RNA helicase A; double-stranded RNA binding domain	99.37
1x48_A	88	Interferon-induced, double-stranded RNA- activated	99.36
3llh_A	90	RISC-loading complex subunit tarbp2; DSRBD, DSRM,	99.36
1uil_A	113	Double-stranded RNA-binding motif; structural geno	99.34
2dmy_A	97	Spermatid perinuclear RNA-binding protein; DSRM do	99.33
1x47_A	98	DGCR8 protein; structural genomics, DSRM domain, N	99.32
2l33_A	91	Interleukin enhancer-binding factor 3; structural	99.31
1t4n_A	94	Ribonuclease III; DSRBD, RNA-binding, hydrolase; N	99.31
1whn_A	128	Hypothetical protein riken cDNA 2310016K04; double	99.3
1t4o_A	117	Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydro	99.24
2ljh_A	114	Double-stranded RNA-specific editase ADAR; DSRBD,	99.21
2b7v_A	71	Double-stranded RNA-specific editase 1; RNA editin	99.18
2l3j_A	236	Double-stranded RNA-specific editase 1; editing, d	99.17
3c4b_A	265	Endoribonuclease dicer; RNAse, dsRNA binding prote	99.15
3p1x_A	75	Interleukin enhancer-binding factor 3; structural	99.09
2nug_A	221	Ribonuclease III, RNAse III; dsRNA, RNA interferen	99.01
1o0w_A	252	Ribonuclease III, RNAse III; TM1102, structural ge	99.01
2a11_A	242	Ribonuclease III, RNAse III; nuclease domain, stru	98.86
3n3w_A	248	Ribonuclease III; nuclease domain, ribonuclase III	98.85
3rv0_A	341	K. polysporus DCR1; RNAse III enzyme, RNA binding	98.15
3c4b_A	265	Endoribonuclease dicer; RNAse, dsRNA binding prote	97.6
2kou_A	102	Dicer-like protein 4; ATP-binding, endonuclease, h	96.54
2qvw_A	756	GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral	94.77
2db2_A	119	KIAA0890 protein; DSRM domain, structural genomics	89.87
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	88.43

>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1

Probab=99.96  E-value=4.1e-29  Score=223.32  Aligned_cols=152  Identities=24%  Similarity=0.258  Sum_probs=130.0

Q ss_pred             ChHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHhhhhcC-CC-
Q 018960            1 MHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKIKDE-GC-   77 (348)
Q Consensus         1 myKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~~~e-~~-   77 (348)
                      +||+.||||||++++. |.|.++. .|+.|.+.|++.|+++|..|.. |.|.|||+||+.||+.+|..|....... +. 
T Consensus        14 n~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~-G~G~sKK~Aeq~AA~~al~~L~~~~~~~~p~~   91 (179)
T 1qu6_A           14 FFMEELNTYRQKQGVV-LKYQELPNSGPPHDRRFTFQVIIDGREFPE-GEGRSKKEAKNAAAKLAVEILNKEKKAVSPLL   91 (179)
T ss_dssp             SHHHHHHHHHHHHTCC-CEEEEEESCBTTTBCCEEEEEESSSSCCCE-EECCSSHHHHHHHHHHHHHHHHSCCSCCSCSS
T ss_pred             CHHHHHHHHHHhCCCC-CeEEEeeccCCCCCCeEEEEEEECCEEEEe-cCCCCHHHHHHHHHHHHHHHHhcccccCCCcc
Confidence            4899999999999986 8999875 8999999999999999987765 4899999999999999999997643210 00 


Q ss_pred             -C----CCCCCCCChhHHHHHHHHHcCCCCCcEEEeec-CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHH
Q 018960           78 -P----LINQDTVFCKSILNEFAVKMNLELPAYSTRQS-EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL  151 (348)
Q Consensus        78 -~----~~~~~~~npKs~LQE~cQk~~~~~P~Y~~v~e-pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L  151 (348)
                       +    ..+....||++.||||||++++.+ .|++... ++|.+.|+|+|.|+|..|+.|.|+|||+||+.||+.||..|
T Consensus        92 ~~~~~~~e~~~~~n~~~~L~E~~qk~~~~~-~Y~~~~~G~~h~~~F~~~v~v~~~~~~~g~g~sKK~Ak~~AA~~al~~L  170 (179)
T 1qu6_A           92 LTTTNSSEGLSMGNYIGLINRIAQKKRLTV-NYEQCASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQI  170 (179)
T ss_dssp             CCCSCSSCCCCCCCCHHHHHHHHHHSCCEE-EEEEEEECSSSSSEEEEEEEEETTBCCEEEESSHHHHHHHHHHHHHHHH
T ss_pred             CCCCCcccccCCCCHHHHHHHHHHhcCCcc-eEEecCcCCCCCCeEEEEEEECCEEEeeEEECCHHHHHHHHHHHHHHHH
Confidence             0    011245799999999999999987 9998655 57999999999999998899999999999999999999999


Q ss_pred             HhhC
Q 018960          152 LVTS  155 (348)
Q Consensus       152 ~~~s  155 (348)
                      ....
T Consensus       171 ~~~~  174 (179)
T 1qu6_A          171 LSEE  174 (179)
T ss_dssp             HHCC
T ss_pred             hccc
Confidence            7654

>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}

Probab=99.94  E-value=3.4e-27  Score=219.57  Aligned_cols=173  Identities=24%  Similarity=0.242  Sum_probs=128.4

Q ss_pred             ChHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHhhhhcC-CC-
Q 018960            1 MHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKIKDE-GC-   77 (348)
Q Consensus         1 myKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~~~e-~~-   77 (348)
                      .||+.||||||++++.+|.|.++. .|+.  +.|++.|.++|..|..| .|.|||+|++.||+.||..|....... +. 
T Consensus        23 d~ks~LqE~~q~~~~~~p~Y~~~~~~Gp~--~~F~~~v~v~g~~~~~G-~G~SKK~Aeq~AA~~aL~~L~~~~~~~~~~~   99 (232)
T 2yt4_A           23 SEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGSG-TASSKKLAKNKAARATLEILIPDFVKQTSEE   99 (232)
T ss_dssp             CHHHHHHHHHHHTTCCCCEEEEEECSCTT--SCEEEEEEETTEEEEEE-EESSHHHHHHHHHHHHHHHHSTTTTTC----
T ss_pred             CHHHHHHHHHHHcCCCCCeEEEEeeECCC--CcEEEEEEECCEEEeec-CCCCHHHHHHHHHHHHHHHHHhhccccCCcc
Confidence            389999999999999899999976 6887  99999999999988764 899999999999999999997642210 00 


Q ss_pred             --------------CCC---------CCCCCChhHHHHHHHHHcCCCCCcEE--Eeec--CCCCCcEEEEEEECCEEeee
Q 018960           78 --------------PLI---------NQDTVFCKSILNEFAVKMNLELPAYS--TRQS--EALLPVFVSSLVFNGVTYTG  130 (348)
Q Consensus        78 --------------~~~---------~~~~~npKs~LQE~cQk~~~~~P~Y~--~v~e--pgH~~~F~v~V~I~g~~~~~  130 (348)
                                    ...         .....|||+.||| ||++++.+|.|+  ++.+  ++|.+.|+|+|.  + .++.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~kt~LqE-~~~~~~~~p~Y~~~~~~~~Gp~h~~~F~~~v~--~-~~~~  175 (232)
T 2yt4_A          100 KPKDSEELEYFNHISIEDSRVYELTSKAGLLSPYQILHE-CLKRNHGMGDTSIKFEVVPGKNQKSEYVMACG--K-HTVR  175 (232)
T ss_dssp             ----CCGGGGGGGSBTTCTTHHHHHHHHTCCCHHHHHHH-HHHTSSSCCCEEEECC------CCEEEEEEET--T-EEEE
T ss_pred             ccccccchhhcccccccCCcccccccccCCCChhHHHHH-HHHcCCCCCceEEEEeecCCCCCCCEEEEEEE--E-EEEE
Confidence                          000         0124599999999 999999999999  5554  569999999986  4 4678


Q ss_pred             eecCCHHHHHHHHHHHHHHHHHhhC-CChhHHHHHHHhhhhHHHhh--hcccCCcccceee
Q 018960          131 EPGRSKKEAEQLAARAVIRTLLVTS-GSATILSEIIKSKGKLYAAL--NKVKESNYSTQKI  188 (348)
Q Consensus       131 G~G~SKKeAKq~AA~~AL~~L~~~s-~~~~ll~e~i~sk~~l~~~~--~k~k~~~~s~qk~  188 (348)
                      |.|+|||+|||.||+.||+.|.... +|++++        .+|+..  +.+++....+|.|
T Consensus       176 G~G~sKK~Aeq~AA~~aL~~L~~~~~~~~~l~--------~~~g~~~~~~~~~~~~~~~~~  228 (232)
T 2yt4_A          176 GWCKNKRVGKQLASQKILQLLHPHVKNWGSLL--------RMYGRESSKMVKQETSDKSVI  228 (232)
T ss_dssp             EEESSHHHHHHHHHHHHHHHHSTTCCBHHHHH--------HHHTTC---------------
T ss_pred             EEeCCHHHHHHHHHHHHHHHHHhhccchhHHH--------HHhccccccccchhhhhhhee
Confidence            9999999999999999999998754 677777        567743  4457777888877

>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}

Probab=99.90  E-value=6e-23  Score=191.16  Aligned_cols=144  Identities=27%  Similarity=0.281  Sum_probs=118.8

Q ss_pred             ChHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHhhhhc-----
Q 018960            1 MHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKIKD-----   74 (348)
Q Consensus         1 myKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~~~-----   74 (348)
                      .||+.|++|++..  .+|.|.++. .|+.|++.|++.|.++|..|  .|.|.|||+|++.||+.||..|......     
T Consensus         5 ~~K~~l~~l~e~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~--~G~G~SKK~Aeq~AA~~al~~l~~~~~~~~~~~   80 (236)
T 2l3j_A            5 LPKNALMQLNEIK--PGLQYMLLSQTGPVHAPLFVMSVEVNGQVF--EGSGPTKKKAKLHAAEKALRSFVQFPNASEAHL   80 (236)
T ss_dssp             CTHHHHHHHHHHC--SSCEEEEEEEESCTTSCEEEEEEEETTEEE--EEEESHHHHHHHHHHHHHHHHHTTCSSCSCCCC
T ss_pred             CCcCHHHHHhhcC--CCceEEEEeccCCCCCCeEEEEEEECCEEE--EEecCChHHHHHHHHHHHHHHHHhccccccchh
Confidence            4799999999874  489999976 79999999999999999887  3689999999999999999998753200     


Q ss_pred             --------------C--CC---------C-------------------------C--------------------CCCCC
Q 018960           75 --------------E--GC---------P-------------------------L--------------------INQDT   84 (348)
Q Consensus        75 --------------e--~~---------~-------------------------~--------------------~~~~~   84 (348)
                                    +  +.         .                         +                    .....
T Consensus        81 amg~~~~~~~d~~~d~~~~p~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~~~~  160 (236)
T 2l3j_A           81 AMGRTLSVNTDFTSDQADFPDTLFNGFETPDKSEPPFYVGSNGDDSFSSSGDVSLSASPVPASLTQPPLPIPPPFPPPSG  160 (236)
T ss_dssp             SCCCCCCCTTSCCSCCSCCCCCCCCCCCCSSSSCCCSSCSSSCSSSSSCSCCCSSCCCCCCCCSSSCSSSSCCCCCCCSS
T ss_pred             hhccCCCCCCCCcccccccchhhcccccccccccccccccccccccccccchhhccccccccccccccCccccccCCCCC
Confidence                          0  00         0                         0                    00023


Q ss_pred             CChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHhh
Q 018960           85 VFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVT  154 (348)
Q Consensus        85 ~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~  154 (348)
                      .|||++||||     +..|.|+++.+  ++|.++|+|+|.|+|..+ .|.|+|||+|||.||+.||+.|...
T Consensus       161 ~d~ks~LqE~-----~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~G~G~sKK~Aeq~AA~~al~~L~~~  226 (236)
T 2l3j_A          161 KNPVMILNEL-----RPGLKYDFLSESGESHAKSFVMSVVVDGQFF-EGSGRNKKLAKARAAQSALATVFNL  226 (236)
T ss_dssp             CCHHHHHHHH-----CCCEEEEEECCSSSSSSCCEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHhc-----CCCCcEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHccc
Confidence            6999999999     56789999876  569999999999999876 8999999999999999999999643

>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A

Probab=99.78  E-value=4.9e-19  Score=137.95  Aligned_cols=70  Identities=31%  Similarity=0.571  Sum_probs=65.4

Q ss_pred             CCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHh
Q 018960           84 TVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLV  153 (348)
Q Consensus        84 ~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~  153 (348)
                      ..|||+.||||||++++.+|.|+++.+  ++|++.|+|.|.|+|..++.|.|+|||+|||.||+.||..|..
T Consensus         3 ~~n~Kt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~~   74 (76)
T 3adj_A            3 HGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQS   74 (76)
T ss_dssp             CHHHHHHHHHHHHTTTCCCCEEEEEEEECSSSCEEEEEEEEETTEEEECCCBSSHHHHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHhCCCCCeEEEeeccCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHHHhh
Confidence            368999999999999999999999876  5799999999999999999999999999999999999999864

>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A

Probab=99.78  E-value=9.9e-19  Score=134.98  Aligned_cols=69  Identities=35%  Similarity=0.531  Sum_probs=65.0

Q ss_pred             CCChhHHHHHHHHHcCCCCCcEEEeec-CCCCCcEEEEEEECCEEeeeeec-CCHHHHHHHHHHHHHHHHH
Q 018960           84 TVFCKSILNEFAVKMNLELPAYSTRQS-EALLPVFVSSLVFNGVTYTGEPG-RSKKEAEQLAARAVIRTLL  152 (348)
Q Consensus        84 ~~npKs~LQE~cQk~~~~~P~Y~~v~e-pgH~~~F~v~V~I~g~~~~~G~G-~SKKeAKq~AA~~AL~~L~  152 (348)
                      ..|||+.||||||++++.+|.|+++.+ |+|++.|+|.|.|+|..++.|.| +|||+|||.||+.||..|.
T Consensus         2 ~~d~Kt~LqE~~q~~~~~~p~Y~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~~sKK~Aeq~AA~~al~~L~   72 (73)
T 3adg_A            2 SHVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELA   72 (73)
T ss_dssp             CCSHHHHHHHHHHHTTCCCCEEEEEEESSTTSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHcCCCCCEEEEEeECCCCCCeEEEEEEECCEEEEeeeccCCHHHHHHHHHHHHHHHhh
Confidence            469999999999999999999999987 57999999999999999999999 9999999999999999884

>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.76  E-value=2.1e-18  Score=138.74  Aligned_cols=73  Identities=25%  Similarity=0.205  Sum_probs=66.8

Q ss_pred             CCCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHhhC
Q 018960           82 QDTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTS  155 (348)
Q Consensus        82 ~~~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~s  155 (348)
                      ....|||+.||||||++++.+|.|+++.+  ++|.+.|+|.|.|+|. ++.|.|+|||+|||.||+.||+.|...+
T Consensus        13 ~~~~d~Kt~LqE~~Qk~~~~~P~Y~~~~~~Gp~h~~~F~~~v~i~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~~s   87 (89)
T 2cpn_A           13 QSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRVSGPS   87 (89)
T ss_dssp             CCCCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHHcCCCCCeEEEEeeECCCCCCeEEEEEEECCE-EEEeeeCCHHHHHHHHHHHHHHHHHhhc
Confidence            34679999999999999999999999876  5799999999999998 8999999999999999999999997544

>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1

Probab=99.76  E-value=1.7e-18  Score=132.16  Aligned_cols=65  Identities=23%  Similarity=0.280  Sum_probs=61.5

Q ss_pred             hhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHH
Q 018960           87 CKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLL  152 (348)
Q Consensus        87 pKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~  152 (348)
                      |++.||||||++++..|.|+++.+  ++|++.|+|.|.|+|. ++.|.|+|||+|||.||+.||..|.
T Consensus         2 p~s~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G~G~sKK~Aeq~AA~~al~~L~   68 (69)
T 1di2_A            2 PVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETF-VETGSGTSKQVAKRVAAEKLLTKFK   68 (69)
T ss_dssp             HHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEeecCCHHHHHHHHHHHHHHHHh
Confidence            899999999999999999999876  5699999999999998 9999999999999999999999885

>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}

Probab=99.76  E-value=3.4e-18  Score=137.27  Aligned_cols=71  Identities=23%  Similarity=0.204  Sum_probs=65.6

Q ss_pred             CCCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHh
Q 018960           82 QDTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLV  153 (348)
Q Consensus        82 ~~~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~  153 (348)
                      ....|||+.||||||++++.+|.|+++.+  ++|.+.|+|.|.|+|. ++.|.|+|||+|||.||+.||+.|..
T Consensus        12 ~~~~d~Ks~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~   84 (88)
T 3adl_A           12 PRGSHEVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRVHT   84 (88)
T ss_dssp             CTTCCHHHHHHHHHHHTTCCCCEEEEEEEESCTTSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEEeeCCHHHHHHHHHHHHHHHHHc
Confidence            34579999999999999999999999876  5799999999999998 89999999999999999999999964

>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.75  E-value=5.8e-18  Score=136.11  Aligned_cols=69  Identities=20%  Similarity=0.084  Sum_probs=64.5

Q ss_pred             CCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHh
Q 018960           84 TVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLV  153 (348)
Q Consensus        84 ~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~  153 (348)
                      ..|||+.||||||++++.+|.|+++.+  ++|++.|+|.|.|+|. ++.|.|+|||+|||.||+.||+.|..
T Consensus         5 ~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~   75 (89)
T 1uhz_A            5 SSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNE-VATGTGPNKKIAKKNAAEAMLLQLGY   75 (89)
T ss_dssp             SSCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHTS
T ss_pred             CCCHHHHHHHHHHHhCCCCCeEEEEEeECCCCCCeEEEEEEECCE-EEEEeeCCHHHHHHHHHHHHHHHHhc
Confidence            579999999999999999999999876  5799999999999997 89999999999999999999999963

>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}

Probab=99.74  E-value=2.9e-18  Score=136.75  Aligned_cols=70  Identities=21%  Similarity=0.240  Sum_probs=63.3

Q ss_pred             CChhHHHHHHHHHc-----CCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHhh
Q 018960           85 VFCKSILNEFAVKM-----NLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVT  154 (348)
Q Consensus        85 ~npKs~LQE~cQk~-----~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~  154 (348)
                      .|||+.||||||++     ++..|.|+++.+  |+|++.|+|.|.|+|..++.|.|+|||+|||.||+.||..|...
T Consensus         1 ~d~Kt~LQE~~Q~~~~~~~~~~~p~Y~~~~~~Gp~H~~~F~v~V~v~g~~~~~G~G~SKK~AEq~AA~~AL~~L~~~   77 (85)
T 2khx_A            1 NDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYNFP   77 (85)
T ss_dssp             CCSCHHHHHHHHHCCCSSSCCCCCCEEECCCCCSSSCCCEEEEEEETTEECCCEEESSHHHHHHHHHHHHHTTCCSS
T ss_pred             CCHHHHHHHHHhhhhhhcCCCCCceEEEEEeECCCCCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHhHh
Confidence            48999999999984     678899999876  57999999999999999999999999999999999999887543

>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}

Probab=99.73  E-value=7.1e-18  Score=139.02  Aligned_cols=77  Identities=32%  Similarity=0.482  Sum_probs=65.9

Q ss_pred             CCCCChhHHHHHHHHHcCCCCCcEEEeec-CCCCCcEEEEEEECCEEeeeeec-CCHHHHHHHHHHHHHHHHHhhCCCh
Q 018960           82 QDTVFCKSILNEFAVKMNLELPAYSTRQS-EALLPVFVSSLVFNGVTYTGEPG-RSKKEAEQLAARAVIRTLLVTSGSA  158 (348)
Q Consensus        82 ~~~~npKs~LQE~cQk~~~~~P~Y~~v~e-pgH~~~F~v~V~I~g~~~~~G~G-~SKKeAKq~AA~~AL~~L~~~s~~~  158 (348)
                      ....|||+.||||||++++.+|.|+++.+ ++|++.|+|.|.|+|..++.|.| +|||+|||.||+.||..|.......
T Consensus        14 ~~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~G~G~~SKK~Aeq~AA~~AL~~L~~~~~~~   92 (103)
T 2l2n_A           14 SNCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELAKSSELS   92 (103)
T ss_dssp             -----CTTHHHHHHHHTTCCCCEEEEEEESCSSSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHHHHC---
T ss_pred             CCCCCHHHHHHHHHHHcCCCCCeEEEEeEcCCCCCeEEEEEEECCEEEEEeecCCCHHHHHHHHHHHHHHHHhcccccc
Confidence            34679999999999999999999999987 57999999999999999999999 9999999999999999998776543

>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.73  E-value=1.3e-17  Score=132.44  Aligned_cols=70  Identities=26%  Similarity=0.354  Sum_probs=64.2

Q ss_pred             CCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHhh
Q 018960           83 DTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVT  154 (348)
Q Consensus        83 ~~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~  154 (348)
                      ...|||+.||||||+++ ..|.|+++.+  ++|++.|+|.|.|+| .++.|.|+|||+|||.||+.||+.|...
T Consensus         6 ~~~d~Ks~LqE~~q~~~-~~p~Y~~~~~~Gp~h~~~F~~~v~v~~-~~~~G~G~SKK~Aeq~AA~~aL~~L~~~   77 (84)
T 2dix_A            6 SGKTPIQVLHEYGMKTK-NIPVYECERSDVQIHVPTFTFRVTVGD-ITCTGEGTSKKLAKHRAAEAAINILKAN   77 (84)
T ss_dssp             CCCCHHHHHHHHHHHTT-CCCEEEEEEEECSSSSCEEEEEEEETT-EEEEECSSCTTHHHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHcC-CCCeEEEEEeECCCCCCeEEEEEEECC-EEEEeeeCCHHHHHHHHHHHHHHHHhcc
Confidence            45799999999999998 6899999876  579999999999999 8899999999999999999999999754

>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A

Probab=99.73  E-value=2.3e-18  Score=133.91  Aligned_cols=69  Identities=20%  Similarity=0.255  Sum_probs=63.9

Q ss_pred             CCCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHH
Q 018960           82 QDTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLL  152 (348)
Q Consensus        82 ~~~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~  152 (348)
                      ....|||+.||||||++++. |.|+++.+  ++|.+.|+|.|.|+| .++.|.|+|||+|||.||+.||..|.
T Consensus         4 ~~~~d~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~i~~-~~~~G~G~sKK~Aeq~AA~~aL~~L~   74 (76)
T 1ekz_A            4 GDKKSPISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGS-IVTEGEGNGKKVSKKRAAEKMLVELQ   74 (76)
T ss_dssp             CCCSCHHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETT-EEEEECCCSTTSSSHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHcCCC-CEEEEEEeECCCCCCcEEEEEEECC-EEEEEeeCCHHHHHHHHHHHHHHHHh
Confidence            34679999999999999999 99999876  579999999999999 88999999999999999999999885

>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}

Probab=99.73  E-value=1.1e-17  Score=134.47  Aligned_cols=72  Identities=24%  Similarity=0.285  Sum_probs=58.8

Q ss_pred             CCCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHhhC
Q 018960           82 QDTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTS  155 (348)
Q Consensus        82 ~~~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~s  155 (348)
                      ....|||+.||||||+++. .|.|+++.+  ++|++.|+|.|.|+|. ++.|.|+|||+|||.||+.||+.|....
T Consensus        11 ~~~kd~Ks~LqE~~q~~~~-~p~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~aL~~L~~~~   84 (90)
T 3llh_A           11 NPGKTPISLLQEYGTRIGK-TPVYDLLKAEGQAHQPNFTFRVTVGDT-SCTGQGPSKKAAKHKAAEVALKHLKGGS   84 (90)
T ss_dssp             --CCCHHHHHHHHHHHTTC-CCEEEEEEEC-----CCEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHC---
T ss_pred             ccCCCHHHHHHHHHHhcCC-CCEEEEEEeECCCCCCcEEEEEEECCE-EEEEEeCCHHHHHHHHHHHHHHHHHhcc
Confidence            3468999999999999875 799999876  5799999999999997 6889999999999999999999997664

>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.72  E-value=1.2e-17  Score=136.37  Aligned_cols=74  Identities=19%  Similarity=0.234  Sum_probs=67.0

Q ss_pred             CCCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHhhCC
Q 018960           82 QDTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSG  156 (348)
Q Consensus        82 ~~~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~s~  156 (348)
                      ....|||+.||||||++++. |.|+++.+  ++|.+.|+|.|.|+|+.++.|.|+|||+|||.||+.||+.|.....
T Consensus        11 ~~~~n~Kt~LqE~~Q~~~~~-p~Y~~~~~~Gp~H~~~F~v~v~i~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~~   86 (97)
T 1x49_A           11 DTPGFYMDKLNKYRQMHGVA-ITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLAVDILDNENK   86 (97)
T ss_dssp             CCTTHHHHHHHHHHHHHTCC-EEEEEEEEESCSSSCEEEEEEEESSCCCCCEEESSHHHHHHHHHHHHHHHHTTTCC
T ss_pred             CCCCCHHHHHHHHHHHcCCC-CeEEEEEeeCCCCCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHHhhcC
Confidence            34679999999999999997 79998865  5799999999999999899999999999999999999999976554

>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A

Probab=99.71  E-value=6e-18  Score=155.04  Aligned_cols=133  Identities=23%  Similarity=0.174  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHcCCCCCceEEeccCCCCCCceEEEEEEC------ceEEeCCCCCCchHHHHHHHHHHHHHHHH-hhhhcC
Q 018960            3 KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVD------GVTYTSPNTFSHRKAAEQDVAKIALECIS-KKIKDE   75 (348)
Q Consensus         3 KS~LqE~~QK~g~~LP~Y~lv~~Gp~H~~~Ft~SV~vD------GaiY~dgG~GsSKKeAKq~AAk~aL~~L~-~~~~~e   75 (348)
                      ...|.++|.+++  +..|...+.|+..     .++..|      |++|.++|.  ....++++..+.+...+. ....  
T Consensus        77 ~~~la~~a~~l~--l~~~l~~~~~~~~-----~~~lad~~EAliGAiyld~g~--~~~~~~~~i~~~~~~~~~~~~~~--  145 (221)
T 2nug_A           77 EEFFNLLAQKLE--LHKFIRIKRGKIN-----ETIIGDVFEALWAAVYIDSGR--DANFTRELFYKLFKEDILSAIKE--  145 (221)
T ss_dssp             HHHHHHHHHTTT--GGGTCBSCTTCCC-----HHHHHHHHHHHHHHHHHHTTS--CHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred             HHHHHHHHHHcC--hHHhhccCCCccc-----chHHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHhhhhhc--
Confidence            467899999998  7788877766543     333444      889999762  233388887766545444 2211  


Q ss_pred             CCCCCCCCCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHH
Q 018960           76 GCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLL  152 (348)
Q Consensus        76 ~~~~~~~~~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~  152 (348)
                           .....|||+.||||||++++..|.|+++.+  ++|.+.|+|.|.|+|. ++.|.|+|||+|||.||+.||+.|.
T Consensus       146 -----~~~~~~pks~LqE~~q~~~~~~p~Y~~~~~~G~~h~~~F~v~v~v~~~-~~~G~G~skK~Ae~~AA~~AL~~L~  218 (221)
T 2nug_A          146 -----GRVKKDYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEY-RTLGEGKSKKEAEQRAAEELIKLLE  218 (221)
T ss_dssp             -----TCSCCCHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHC
T ss_pred             -----cccccCHHHHHHHHHHHcCCCCceEEEEEeeCCCCCceEEEEEEECCE-EEEEecCCHHHHHHHHHHHHHHHhh
Confidence                 122579999999999999999999999876  5699999999999999 9999999999999999999999985

>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.70  E-value=5.7e-17  Score=132.48  Aligned_cols=74  Identities=30%  Similarity=0.337  Sum_probs=66.9

Q ss_pred             CCCCCChhHHHHHHHHHcCCCCCcEEEeecCCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHhh
Q 018960           81 NQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVT  154 (348)
Q Consensus        81 ~~~~~npKs~LQE~cQk~~~~~P~Y~~v~epgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~  154 (348)
                      +.+..|||+.||||||++++.+|.|+++.+.|..+.|+|.|.|+|..++.|.|+|||+|||.||+.||+.|...
T Consensus        12 ~~~~kd~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~~~F~~~V~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~   85 (98)
T 1x47_A           12 NPNGKSEVCILHEYMQRVLKVRPVYNFFECENPSEPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPD   85 (98)
T ss_dssp             CTTCCCHHHHHHHHHHHHTCSCCEEEEEECSSSSCCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHCSS
T ss_pred             cCCCCCHHHHHHHHHHHcCCCCCeEEEEEeECCCCcEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHhh
Confidence            34678999999999999999999999998744349999999999999999999999999999999999999743

>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A

Probab=99.70  E-value=4.7e-17  Score=125.67  Aligned_cols=67  Identities=25%  Similarity=0.308  Sum_probs=61.0

Q ss_pred             CCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHh
Q 018960           84 TVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLV  153 (348)
Q Consensus        84 ~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~  153 (348)
                      ..|||+.||||||+  +..|.|+++.+  ++|+++|+|.|.|+|..+ .|.|+|||+|||.||+.||+.|..
T Consensus         3 ~~d~Ks~Lqe~~q~--~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L~~   71 (73)
T 2b7t_A            3 PVLPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSFVQ   71 (73)
T ss_dssp             SSSSHHHHHHHHHH--CSCCEEEEEEEECSSSSCEEEEEEESSSSEE-EEEESSHHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHcC--CCCceEEEEEeeCCCCCCeEEEEEEECCEEE-EeecCCHHHHHHHHHHHHHHHHhc
Confidence            46999999999995  77899999876  579999999999999887 899999999999999999999863

>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A

Probab=99.69  E-value=4e-17  Score=133.77  Aligned_cols=70  Identities=23%  Similarity=0.203  Sum_probs=63.4

Q ss_pred             CCChhHHHHHHHHHcCCCCCcEEEeec-CCCCCcEEEEEEECC-EEeeeeecCCHHHHHHHHHHHHHHHHHhh
Q 018960           84 TVFCKSILNEFAVKMNLELPAYSTRQS-EALLPVFVSSLVFNG-VTYTGEPGRSKKEAEQLAARAVIRTLLVT  154 (348)
Q Consensus        84 ~~npKs~LQE~cQk~~~~~P~Y~~v~e-pgH~~~F~v~V~I~g-~~~~~G~G~SKKeAKq~AA~~AL~~L~~~  154 (348)
                      ..|||+.||||||++ +..|.|++... ++|++.|+|.|.|+| ..++.|.|+|||+|||.||+.||+.|...
T Consensus         5 ~~d~Kt~LqE~~Qk~-~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~   76 (99)
T 1whq_A            5 SSGIKNFLYAWCGKR-KMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLVRI   76 (99)
T ss_dssp             CCSSHHHHHHHHHHT-TCCCEEEEEEEECSSSEEEEEEEECTTCSCCEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHC-CCCCeEEEeeecCCCCCeEEEEEEECCeEEEEEeccCCHHHHHHHHHHHHHHHHHhh
Confidence            469999999999999 88999999333 579999999999999 68999999999999999999999999744

>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1

Probab=99.69  E-value=5.7e-18  Score=158.44  Aligned_cols=139  Identities=23%  Similarity=0.219  Sum_probs=105.8

Q ss_pred             HHHHHHHHHHcCCCCCceEEeccCCCCC-CceEEEEEEC------ceEEeCCCCCCchHHHHHHHHHHHHHHHHhhhhcC
Q 018960            3 KNRLQEHAQRSGIPLPVYQSHNEGFQHA-PKFRASVSVD------GVTYTSPNTFSHRKAAEQDVAKIALECISKKIKDE   75 (348)
Q Consensus         3 KS~LqE~~QK~g~~LP~Y~lv~~Gp~H~-~~Ft~SV~vD------GaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~~~e   75 (348)
                      ...|.++|.+++  +..|...+.|+... .+-..++..|      |++|+++|    ...++++..+.+...+.....  
T Consensus       103 ~~~la~~a~~lg--L~~~l~~~~~e~~~~~~~~~~~lad~~EAliGAiyld~g----~~~~~~~i~~~~~~~~~~~~~--  174 (252)
T 1o0w_A          103 EEVLAMVSRKMN--LGKFLFLGKGEEKTGGRDRDSILADAFEALLAAIYLDQG----YEKIKELFEQEFEFYIEKIMK--  174 (252)
T ss_dssp             HHHHHHHHHHTT--HHHHCBCCHHHHHTTGGGCHHHHHHHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHHHHHT--
T ss_pred             HHHHHHHHHHcC--cHHhhccCchhhhcCCCCCccHHHhHHHHHHHHHHHcCC----HHHHHHHHHHHHHHHHHHhhh--
Confidence            467899999998  77787766443221 1222344445      88999986    677877776664444433221  


Q ss_pred             CCCCCCCCCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHh
Q 018960           76 GCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLV  153 (348)
Q Consensus        76 ~~~~~~~~~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~  153 (348)
                           .....|||+.||||||++++..|.|+++.+  ++|.+.|+|.|.|+|+.++.|.|+|||+|||.||+.||+.|..
T Consensus       175 -----~~~~~dpkt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~  249 (252)
T 1o0w_A          175 -----GEMLFDYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYEKLLK  249 (252)
T ss_dssp             -----TCCCSCHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHC-
T ss_pred             -----cccccCHHHHHHHHHHHcCCCCceEEEEeeeCCCCCCeEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence                 123579999999999999999999999875  5699999999999999999999999999999999999999864


Q ss_pred             h
Q 018960          154 T  154 (348)
Q Consensus       154 ~  154 (348)
                      .
T Consensus       250 ~  250 (252)
T 1o0w_A          250 E  250 (252)
T ss_dssp             -
T ss_pred             c
Confidence            3

>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.68  E-value=8.2e-17  Score=137.73  Aligned_cols=71  Identities=28%  Similarity=0.280  Sum_probs=66.8

Q ss_pred             CCCChhHHHHHHHHHcCCCCCcEEEeecCCCCCcEEEEEEECCEEeeeeec-CCHHHHHHHHHHHHHHHHHhh
Q 018960           83 DTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPG-RSKKEAEQLAARAVIRTLLVT  154 (348)
Q Consensus        83 ~~~npKs~LQE~cQk~~~~~P~Y~~v~epgH~~~F~v~V~I~g~~~~~G~G-~SKKeAKq~AA~~AL~~L~~~  154 (348)
                      ...|||+.||||||++++.+|.|+++.+ +|++.|+|.|.|+|..++.|.| +|||+|||.||+.||+.|...
T Consensus        24 ~~~d~Kt~LQE~~Qk~~~~~P~Y~~v~~-~H~~~F~v~V~v~g~~~g~G~G~~SKK~AEQ~AA~~AL~~L~~~   95 (128)
T 1whn_A           24 PQITPKMCLLEWCRREKLPQPVYETVQR-TIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIVCLRSQGLP   95 (128)
T ss_dssp             TTCCHHHHHHHHHHHTTCCCCCCCEEEC-SSSCCEEEEEEETTEEEEESSCBSSHHHHHHHHHHHHHHHHTCS
T ss_pred             cCCCHHHHHHHHHHHcCCCCCeEEEEee-cCCCcEEEEEEECCEEEEEEeccCCHHHHHHHHHHHHHHHHhcc
Confidence            3579999999999999999999999988 9999999999999999999999 999999999999999999643

>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1

Probab=99.68  E-value=2.8e-17  Score=133.82  Aligned_cols=71  Identities=18%  Similarity=0.040  Sum_probs=63.8

Q ss_pred             CCChhHHHHHHHHHcCCCCCcEEEeec-CCCCCcEEEEEEECCE-EeeeeecCCHHHHHHHHHHHHHHHHHhhC
Q 018960           84 TVFCKSILNEFAVKMNLELPAYSTRQS-EALLPVFVSSLVFNGV-TYTGEPGRSKKEAEQLAARAVIRTLLVTS  155 (348)
Q Consensus        84 ~~npKs~LQE~cQk~~~~~P~Y~~v~e-pgH~~~F~v~V~I~g~-~~~~G~G~SKKeAKq~AA~~AL~~L~~~s  155 (348)
                      ..|||+.||||+|++ ...|.|+++.+ |+|++.|++.|.|+|. .++.|.|+|||+|||.||+.||..|....
T Consensus         5 ~~D~KT~LQE~~Q~~-~~~p~Y~v~~~GpdH~k~F~v~v~i~~~~~~g~G~G~SKK~AEQ~AA~~AL~~l~~l~   77 (94)
T 1t4n_A            5 DMNAKRQLYSLIGYA-SLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKMLD   77 (94)
T ss_dssp             CHHHHHHHHHHTCSS-SSCCEEEECCCCSSSCCSEEEEEECSSSCEEEEEEESSHHHHHHHHHHHHHHCHHHHH
T ss_pred             CCCchHHHHHHHcCC-CCCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHHHHHHH
Confidence            569999999999997 56899999877 5799999999999998 89999999999999999999999885443

>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.68  E-value=1.6e-16  Score=129.50  Aligned_cols=71  Identities=23%  Similarity=0.229  Sum_probs=63.9

Q ss_pred             CCCCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHhh
Q 018960           81 NQDTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVT  154 (348)
Q Consensus        81 ~~~~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~  154 (348)
                      +....|||+.||||||++  ..|.|+++.+  ++|++.|+|.|.|+|..+ .|.|+|||+|||.||+.||+.|...
T Consensus        12 ~~~~~d~Kt~LqE~~Q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~aL~~L~~~   84 (97)
T 2dmy_A           12 DSKAIDLMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMGYP   84 (97)
T ss_dssp             CCCSSSCTHHHHHHHHHS--CSCCCEEEEEESCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTCC
T ss_pred             cCCCCCHHHHHHHHHhcC--CCceEEEEEeeCCCCCCeEEEEEEECCEEE-EEeeCCHHHHHHHHHHHHHHHhCCC
Confidence            455689999999999996  6899999875  579999999999999988 8999999999999999999999643

>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.67  E-value=1.5e-16  Score=127.57  Aligned_cols=70  Identities=29%  Similarity=0.418  Sum_probs=63.2

Q ss_pred             CCChhHHHHHHHHHcCCCCCcEEEeec-CCCCC-cEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHhhC
Q 018960           84 TVFCKSILNEFAVKMNLELPAYSTRQS-EALLP-VFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTS  155 (348)
Q Consensus        84 ~~npKs~LQE~cQk~~~~~P~Y~~v~e-pgH~~-~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~s  155 (348)
                      ..|||+.||||||++++.+ .|+ ... ++|++ +|+|.|.|+|+.++.|.|+|||+|||.||+.||+.|....
T Consensus         5 ~~d~Kt~LqE~~Q~~~~~~-~Y~-~~~Gp~H~~~~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~   76 (88)
T 1x48_A            5 SSGYIGLVNSFAQKKKLSV-NYE-QCEPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLLKSP   76 (88)
T ss_dssp             SSCHHHHHHHHHHHTTCCE-EEE-ECCCSSSSSCCEEEEEEESSCEEEEEEESSHHHHHHHHHHHHHHHHHHSC
T ss_pred             CCCHHHHHHHHHHHcCCCC-eeE-EeeCCCCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhcC
Confidence            4699999999999999976 999 333 67999 7999999999999999999999999999999999997653

>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B

Probab=99.66  E-value=5.4e-17  Score=136.81  Aligned_cols=88  Identities=19%  Similarity=0.027  Sum_probs=66.4

Q ss_pred             CCCChhHHHHHHHHHcCCCCCcEEEeec-CCCCCcEEEEEEECCE-EeeeeecCCHHHHHHHHHHHHHHHHHhhCCChhH
Q 018960           83 DTVFCKSILNEFAVKMNLELPAYSTRQS-EALLPVFVSSLVFNGV-TYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATI  160 (348)
Q Consensus        83 ~~~npKs~LQE~cQk~~~~~P~Y~~v~e-pgH~~~F~v~V~I~g~-~~~~G~G~SKKeAKq~AA~~AL~~L~~~s~~~~l  160 (348)
                      ...|||+.||||||+. ...|.|+++.+ |+|++.|++.|.|+|. .++.|.|+|||+|||.||+.||..|....-++.+
T Consensus         6 ~~~D~KT~LQE~~Q~~-~~~P~Y~vv~~GPdH~k~F~v~V~i~g~~~~g~G~G~SKK~AEQ~AA~~AL~~l~~l~Ky~~~   84 (117)
T 1t4o_A            6 LDMNAKRQLYSLIGYA-SLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKMLDFYAKQ   84 (117)
T ss_dssp             CCTTHHHHHHHHHCCG-GGCCEEEEEECCCSSCCCEEEEEECTTCCEEEEEEESSHHHHHHHHHHHHHHCHHHHHHHTC-
T ss_pred             CCCCchHHHHHHHcCC-CCCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3579999999999994 57899999887 5699999999999998 8999999999999999999999988655444444


Q ss_pred             HHHHHHhhhhH
Q 018960          161 LSEIIKSKGKL  171 (348)
Q Consensus       161 l~e~i~sk~~l  171 (348)
                      -+++.++.+.+
T Consensus        85 r~~~~r~~s~~   95 (117)
T 1t4o_A           85 RAAIPRSESVL   95 (117)
T ss_dssp             -----------
T ss_pred             HhhcCCcccee
Confidence            45555554444

>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A

Probab=99.65  E-value=3.1e-16  Score=131.32  Aligned_cols=69  Identities=23%  Similarity=0.267  Sum_probs=62.2

Q ss_pred             CChhHHHHHHHHHcCCCCCcEEEeec-CCCCCcEEEEEEE-----CCEEeeeeecCCHHHHHHHHHHHHHHHHHhh
Q 018960           85 VFCKSILNEFAVKMNLELPAYSTRQS-EALLPVFVSSLVF-----NGVTYTGEPGRSKKEAEQLAARAVIRTLLVT  154 (348)
Q Consensus        85 ~npKs~LQE~cQk~~~~~P~Y~~v~e-pgH~~~F~v~V~I-----~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~  154 (348)
                      .|||+.||||||++++ .|.|++... |+|++.|+|.|.|     +|..++.|.|+|||+|||.||+.||+.|...
T Consensus        26 ~d~Kt~LqE~~Qk~~~-~p~Y~~~~~Gp~H~~~F~~~V~v~~~~~~~~~~~~G~G~SKK~AEq~AA~~AL~~L~~~  100 (113)
T 1uil_A           26 ENAKARLNQYFQKEKI-QGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLYHL  100 (113)
T ss_dssp             HHHHHHHHHHHHHSCC-CCCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEECCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHCCC-CCeEEEeeECCCCCCcEEEEEEEeeeccCCEEEEEEeeCCHHHHHHHHHHHHHHHHHhc
Confidence            5999999999999999 899994333 6799999999999     6888999999999999999999999999754

>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}

Probab=99.64  E-value=4.3e-16  Score=126.02  Aligned_cols=69  Identities=23%  Similarity=0.214  Sum_probs=62.7

Q ss_pred             CCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHhhC
Q 018960           84 TVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTS  155 (348)
Q Consensus        84 ~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~s  155 (348)
                      ..++|+.||||||+++  .|.|+++.+  ++|+++|+|.|.|+|..+ .|.|+|||+|||.||+.||+.|....
T Consensus        13 ~~~~K~~LqEl~Qk~~--~p~Y~~v~~~Gp~H~~~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L~~~~   83 (91)
T 2l33_A           13 TKHGKNPVMELNEKRR--GLKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKLFPDT   83 (91)
T ss_dssp             CSSTTCHHHHHHHHCS--SCEEEEEEEEECSSCEEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCCCC
T ss_pred             ccCCCCHHHHHHHhCC--CCeEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHhhcC
Confidence            4689999999999998  789999876  679999999999999887 89999999999999999999997554

>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}

Probab=99.64  E-value=1.7e-18  Score=162.09  Aligned_cols=137  Identities=19%  Similarity=0.144  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHcCCCCCceEEeccCCCCC-CceEEEEEEC------ceEEeCCCCCCchHHHHHHHHHHHHHHHHhhhhcC
Q 018960            3 KNRLQEHAQRSGIPLPVYQSHNEGFQHA-PKFRASVSVD------GVTYTSPNTFSHRKAAEQDVAKIALECISKKIKDE   75 (348)
Q Consensus         3 KS~LqE~~QK~g~~LP~Y~lv~~Gp~H~-~~Ft~SV~vD------GaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~~~e   75 (348)
                      ...|.+++.++|  |..|+..+.|+... .+...++..|      |++|.++|    ...|+++..+.+...+....   
T Consensus       101 ~~~La~~a~~lg--L~~~l~~~~~e~~~~g~~~~~~lad~fEAliGAiyld~G----~~~~~~~i~~~~~~~l~~~~---  171 (248)
T 3n3w_A          101 EKSFAKIANSLN--LGDFILMSVAEENNGGKEKPSILSDALEAIIGAIHLEAG----FEFAKTIALRLIEKNFPQID---  171 (248)
T ss_dssp             HHHHHHHHHHTT--GGGTCBCCHHHHHTTGGGCHHHHHHHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHCC------
T ss_pred             HHHHHHHHHHcC--cHHHhhcCchhhhcCCCCCccHHHHHHHHHHHHHHHHCC----hHHHHHHHHHHHHHHHHHhh---
Confidence            367999999999  78888876543221 2233345555      89999986    57777776554322221110   


Q ss_pred             CCCCCCCCCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHH
Q 018960           76 GCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLL  152 (348)
Q Consensus        76 ~~~~~~~~~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~  152 (348)
                          ......|||+.||||||++++..|.|+++.+  ++|.+.|+|.|.|+|+.++.|.|+|||+|||.||+.||+.|.
T Consensus       172 ----~~~~~~dpks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~  246 (248)
T 3n3w_A          172 ----AKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG  246 (248)
T ss_dssp             -------------------------------------------------------------------------------
T ss_pred             ----ccccccCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHH
Confidence                1123579999999999999999999999866  469999999999999999999999999999999999999885

>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}

Probab=99.60  E-value=1.2e-17  Score=155.01  Aligned_cols=140  Identities=25%  Similarity=0.251  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHc---CCCCCceEEeccCCCCC-CceEEEEEEC------ceEEeCCCCCCchHHHHHHHHHHHHHHHHhhh
Q 018960            3 KNRLQEHAQRS---GIPLPVYQSHNEGFQHA-PKFRASVSVD------GVTYTSPNTFSHRKAAEQDVAKIALECISKKI   72 (348)
Q Consensus         3 KS~LqE~~QK~---g~~LP~Y~lv~~Gp~H~-~~Ft~SV~vD------GaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~   72 (348)
                      ...|.++|.++   +  |..|...+.|+... .+...++..|      |++|.++|    ...++++..+.+...+....
T Consensus        83 ~~~la~~a~~l~~~g--L~~~l~~~~~e~~~~~~~~~~~lad~~EAliGAiyld~g----~~~~~~~i~~~~~~~~~~~~  156 (242)
T 2a11_A           83 TQALADVARRLCAEG--LGVHVLLGRGEANTGGADKSSILADGMESLLGAIYLQHG----MEKAREVILRLFGPLLDAAP  156 (242)
T ss_dssp             HHHHHHHHHHHSSSC--SGGGCBCCHHHHHTTGGGCHHHHHHHHHHHHHHHHHHHC----HHHHHHHHHHHTHHHHHHTT
T ss_pred             HHHHHHHHHHhhhhC--hHHHhhcCchhhhcCCCCCccHHHHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHHHhh
Confidence            35789999999   7  77888776544221 2223344444      88999976    57777776665444333221


Q ss_pred             hcCCCCCCCCCCCChhHHHHHHHHHcCCCCCcEEEeec-CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHH
Q 018960           73 KDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQS-EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL  151 (348)
Q Consensus        73 ~~e~~~~~~~~~~npKs~LQE~cQk~~~~~P~Y~~v~e-pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L  151 (348)
                             ......|||+.||||||++++..|.|+++.. ++|.+.|+|.|.++|+.++.|.|+|||+|||.||+.||+.|
T Consensus       157 -------~~~~~~dpkt~Lqe~~q~~~~~~p~Y~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~skk~Ae~~AA~~AL~~L  229 (242)
T 2a11_A          157 -------TLGAGLDWKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKAL  229 (242)
T ss_dssp             -------C------------------------------------------------------------------------
T ss_pred             -------hccccCChHHHHHHHHHHhCCCCCeEEEeccCCCCCCeEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHH
Confidence                   0123569999999999999999999999875 46999999999999998999999999999999999999999


Q ss_pred             HhhC
Q 018960          152 LVTS  155 (348)
Q Consensus       152 ~~~s  155 (348)
                      ....
T Consensus       230 ~~~~  233 (242)
T 2a11_A          230 EVLD  233 (242)
T ss_dssp             ----
T ss_pred             hhcc
Confidence            7543

>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1

Probab=99.59  E-value=1.6e-15  Score=115.67  Aligned_cols=67  Identities=24%  Similarity=0.307  Sum_probs=62.2

Q ss_pred             ChHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHH
Q 018960            1 MHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECIS   69 (348)
Q Consensus         1 myKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~   69 (348)
                      ||++.||||||++++.+|.|.++. +|++|++.|++.|.++|. +.. |.|+|||+|++.||+.+|..|.
T Consensus         1 ~p~s~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~-~~~-G~G~sKK~Aeq~AA~~al~~L~   68 (69)
T 1di2_A            1 MPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETF-VET-GSGTSKQVAKRVAAEKLLTKFK   68 (69)
T ss_dssp             CHHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTE-EEE-EEESSHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEE-eecCCHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999876 899999999999999997 665 4899999999999999998874

>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}

Probab=99.59  E-value=1.7e-15  Score=127.17  Aligned_cols=66  Identities=27%  Similarity=0.334  Sum_probs=60.0

Q ss_pred             CCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHhh
Q 018960           83 DTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVT  154 (348)
Q Consensus        83 ~~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~  154 (348)
                      ...|||+.||||||+     |.|+++.+  ++|+++|+|+|.|+|..+ .|.|+|||+|||+||+.||+.|...
T Consensus        35 ~~kd~Ks~LQE~~q~-----p~Y~~v~~~Gp~H~k~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L~~~  102 (114)
T 2ljh_A           35 QPKNTVAMLNELRHG-----LIYKLESQTGPVHAPLFTISVEVDGQKY-LGQGRSKKVARIEAAATALRSFIQF  102 (114)
T ss_dssp             CCSCHHHHHHHHCSC-----CEEEEEEEECCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCCC
T ss_pred             CCCCHHHHHHHHccC-----CeEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHHcC
Confidence            457999999999984     89999876  579999999999999999 8999999999999999999999754

>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A

Probab=99.59  E-value=5.1e-15  Score=114.10  Aligned_cols=68  Identities=44%  Similarity=0.612  Sum_probs=63.3

Q ss_pred             ChHHHHHHHHHHcCCCCCceEEeccCCCCCCceEEEEEECceEEeCCCCC-CchHHHHHHHHHHHHHHHH
Q 018960            1 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTF-SHRKAAEQDVAKIALECIS   69 (348)
Q Consensus         1 myKS~LqE~~QK~g~~LP~Y~lv~~Gp~H~~~Ft~SV~vDGaiY~dgG~G-sSKKeAKq~AAk~aL~~L~   69 (348)
                      .||+.||||||++++.+|.|.++.+|+.|++.|++.|.++|..|..| .| +|||+|++.||+.||..|.
T Consensus         4 d~Kt~LqE~~q~~~~~~p~Y~~~~~Gp~h~~~F~~~v~v~g~~~~~G-~G~~sKK~Aeq~AA~~al~~L~   72 (73)
T 3adg_A            4 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSL-PGFFNRKAAEQSAAEVALRELA   72 (73)
T ss_dssp             SHHHHHHHHHHHTTCCCCEEEEEEESSTTSCEEEEEEEETTEEEECC-SCBSSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHcCCCCCEEEEEeECCCCCCeEEEEEEECCEEEEee-eccCCHHHHHHHHHHHHHHHhh
Confidence            48999999999999999999999899999999999999999888775 89 8999999999999998874

>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B

Probab=99.59  E-value=4.8e-15  Score=113.68  Aligned_cols=65  Identities=29%  Similarity=0.291  Sum_probs=58.5

Q ss_pred             CCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHhh
Q 018960           84 TVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVT  154 (348)
Q Consensus        84 ~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~  154 (348)
                      ..||++.|||||     ..|.|+++.+  ++|++.|+|.|.|+|..+ .|.|+|||+|||.||+.||+.|...
T Consensus         3 ~knp~s~L~E~~-----~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~G~G~SKK~Aeq~AA~~al~~L~~~   69 (71)
T 2b7v_A            3 GKNPVMILNELR-----PGLKYDFLSESGESHAKSFVMSVVVDGQFF-EGSGRNKKLAKARAAQSALATVFNL   69 (71)
T ss_dssp             SSCHHHHHHHHC-----CSCEEEEEECCCCTTTCCEEEEEECSSCEE-EEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHhC-----CCCEEEEEEeECCCCCceEEEEEEECCEEE-EEeeCCHHHHHHHHHHHHHHHHHhc
Confidence            579999999993     6789999876  579999999999999876 8999999999999999999998753

>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A

Probab=99.55  E-value=1.3e-14  Score=112.81  Aligned_cols=69  Identities=32%  Similarity=0.518  Sum_probs=63.4

Q ss_pred             ChHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHh
Q 018960            1 MHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK   70 (348)
Q Consensus         1 myKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~   70 (348)
                      +||+.||||||++++.+|.|.++. +|+.|++.|++.|.++|..|..| .|+|||+|++.||+.||..|..
T Consensus         5 n~Kt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G-~G~sKK~Aeq~AA~~al~~L~~   74 (76)
T 3adj_A            5 LCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGA-ATRTKKDAEISAGRTALLAIQS   74 (76)
T ss_dssp             HHHHHHHHHHHTTTCCCCEEEEEEEECSSSCEEEEEEEEETTEEEECC-CBSSHHHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHhCCCCCeEEEeeccCCCCCCcEEEEEEECCEEEEEe-ccCCHHHHHHHHHHHHHHHHhh
Confidence            489999999999999999999876 79999999999999999888765 8999999999999999998854

>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1

Probab=99.55  E-value=4.4e-15  Score=132.40  Aligned_cols=70  Identities=24%  Similarity=0.300  Sum_probs=64.6

Q ss_pred             CCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHhh
Q 018960           84 TVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVT  154 (348)
Q Consensus        84 ~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~  154 (348)
                      ..|||+.||||||++++. |.|+++.+  ++|.+.|+|.|.|+|..++.|.|+|||+|||.||+.||+.|...
T Consensus        12 ~~n~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~~~   83 (179)
T 1qu6_A           12 AGFFMEELNTYRQKQGVV-LKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEILNKE   83 (179)
T ss_dssp             SCSHHHHHHHHHHHHTCC-CEEEEEESCBTTTBCCEEEEEESSSSCCCEEECCSSHHHHHHHHHHHHHHHHSC
T ss_pred             CCCHHHHHHHHHHhCCCC-CeEEEeeccCCCCCCeEEEEEEECCEEEEecCCCCHHHHHHHHHHHHHHHHhcc
Confidence            469999999999999987 89999876  57999999999999998999999999999999999999999754

>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}

Probab=99.50  E-value=6.9e-14  Score=129.90  Aligned_cols=73  Identities=29%  Similarity=0.324  Sum_probs=66.4

Q ss_pred             CCCCChhHHHHHHHHHcCCCCCcEEEeecCCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHhh
Q 018960           82 QDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVT  154 (348)
Q Consensus        82 ~~~~npKs~LQE~cQk~~~~~P~Y~~v~epgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~  154 (348)
                      ....|||+.||||||++++..|.|+++.+.|..+.|+|.|.|+|..++.|.|+|||+|||.||+.||..|...
T Consensus        19 ~~~kd~ks~LqE~~q~~~~~~p~Y~~~~~~Gp~~~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~~aL~~L~~~   91 (232)
T 2yt4_A           19 PNGKSEVCILHEYMQRVLKVRPVYNFFECENPSEPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPD   91 (232)
T ss_dssp             CTTSCHHHHHHHHHHHTTCCCCEEEEEECSCTTSCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHSTT
T ss_pred             CCCCCHHHHHHHHHHHcCCCCCeEEEEeeECCCCcEEEEEEECCEEEeecCCCCHHHHHHHHHHHHHHHHHhh
Confidence            3568999999999999999999999988744339999999999999999999999999999999999999764

>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}

Probab=99.49  E-value=7.4e-14  Score=108.55  Aligned_cols=66  Identities=23%  Similarity=0.158  Sum_probs=55.8

Q ss_pred             CCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHhhC
Q 018960           84 TVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTS  155 (348)
Q Consensus        84 ~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~s  155 (348)
                      ..||++.|+|+   .  ..|.|+++.+  ++|++.|+|.|.|+|..+ .|.|+|||+|||.||+.||+.|..+.
T Consensus         6 ~K~pl~~L~q~---~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L~~~~   73 (75)
T 3p1x_A            6 GKNPVMELNEK---R--RGLKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKLFPDT   73 (75)
T ss_dssp             CCCHHHHHHHH---S--TTCCEEEEEEESCTTSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCTTC
T ss_pred             CCCHHHHHHHc---C--CCCEEEEEEeeCCCCCceEEEEEEECCEEE-EEEECCHHHHHHHHHHHHHHHHHccC
Confidence            45566666655   3  5789999876  579999999999999988 89999999999999999999997654

>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}

Probab=99.49  E-value=7.7e-14  Score=114.86  Aligned_cols=71  Identities=44%  Similarity=0.593  Sum_probs=65.1

Q ss_pred             ChHHHHHHHHHHcCCCCCceEEeccCCCCCCceEEEEEECceEEeCCCCC-CchHHHHHHHHHHHHHHHHhhh
Q 018960            1 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTF-SHRKAAEQDVAKIALECISKKI   72 (348)
Q Consensus         1 myKS~LqE~~QK~g~~LP~Y~lv~~Gp~H~~~Ft~SV~vDGaiY~dgG~G-sSKKeAKq~AAk~aL~~L~~~~   72 (348)
                      .||+.||||||++++.+|.|.++.+|+.|++.|++.|.++|..|..| .| +|||.|++.||+.||..|....
T Consensus        18 d~Kt~LqE~~Q~~~~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~G-~G~~SKK~Aeq~AA~~AL~~L~~~~   89 (103)
T 2l2n_A           18 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSL-PGFFNRKAAEQSAAEVALRELAKSS   89 (103)
T ss_dssp             -CTTHHHHHHHHTTCCCCEEEEEEESCSSSCEEEEEEEETTEEEECC-SCBSSHHHHHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHcCCCCCeEEEEeEcCCCCCeEEEEEEECCEEEEEe-ecCCCHHHHHHHHHHHHHHHHhccc
Confidence            48999999999999999999999899999999999999999888775 89 8999999999999999987643

>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}

Probab=99.48  E-value=6e-14  Score=112.49  Aligned_cols=69  Identities=22%  Similarity=0.267  Sum_probs=62.4

Q ss_pred             ChHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHhh
Q 018960            1 MHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKK   71 (348)
Q Consensus         1 myKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~   71 (348)
                      .||+.||||||+.++.+|.|.++. +|+.|.+.|++.|.++|. +.. |.|+|||+|++.||+.||..|...
T Consensus        16 d~Ks~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~-G~G~SKK~Aeq~AA~~AL~~L~~~   85 (88)
T 3adl_A           16 HEVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEI-GSGTSKKLAKRNAAAKMLLRVHTV   85 (88)
T ss_dssp             CHHHHHHHHHHHTTCCCCEEEEEEEESCTTSCEEEEEEEETTE-EEE-EEESSHHHHHHHHHHHHHHHHHC-
T ss_pred             CHHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEE-EeeCCHHHHHHHHHHHHHHHHHcc
Confidence            389999999999999999999976 899999999999999996 665 589999999999999999988653

>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.47  E-value=9e-14  Score=111.62  Aligned_cols=68  Identities=24%  Similarity=0.274  Sum_probs=62.2

Q ss_pred             ChHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHh
Q 018960            1 MHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK   70 (348)
Q Consensus         1 myKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~   70 (348)
                      .||+.||||||++++.+|.|.++. .|+.|.+.|++.|.++|. +.. |.|.|||+|++.||+.||..|..
T Consensus        17 d~Kt~LqE~~Qk~~~~~P~Y~~~~~~Gp~h~~~F~~~v~i~g~-~~~-G~G~SKK~Aeq~AA~~AL~~L~~   85 (89)
T 2cpn_A           17 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEI-GSGTSKKLAKRNAAAKMLLRVSG   85 (89)
T ss_dssp             CHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTE-EEE-EEESSHHHHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHcCCCCCeEEEEeeECCCCCCeEEEEEEECCE-EEE-eeeCCHHHHHHHHHHHHHHHHHh
Confidence            389999999999999999999876 899999999999999997 665 48999999999999999998864

>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.46  E-value=1.3e-13  Score=110.69  Aligned_cols=68  Identities=21%  Similarity=0.187  Sum_probs=61.9

Q ss_pred             ChHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHh
Q 018960            1 MHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK   70 (348)
Q Consensus         1 myKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~   70 (348)
                      .||+.||||||++++.+|.|.++. .|+.|++.|++.|.++|. |.. |.|+|||+|++.||+.||..|..
T Consensus         7 d~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~-G~G~SKK~Aeq~AA~~AL~~L~~   75 (89)
T 1uhz_A            7 GPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNE-VAT-GTGPNKKIAKKNAAEAMLLQLGY   75 (89)
T ss_dssp             CHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTE-EEE-EEESSHHHHHHHHHHHHHHHHTS
T ss_pred             CHHHHHHHHHHHhCCCCCeEEEEEeECCCCCCeEEEEEEECCE-EEE-EeeCCHHHHHHHHHHHHHHHHhc
Confidence            489999999999999999999876 799999999999999995 655 58999999999999999998864

>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}

Probab=99.44  E-value=8.7e-14  Score=110.83  Aligned_cols=67  Identities=24%  Similarity=0.249  Sum_probs=59.9

Q ss_pred             hHHHHHHHHHHc-----CCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHH
Q 018960            2 HKNRLQEHAQRS-----GIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECIS   69 (348)
Q Consensus         2 yKS~LqE~~QK~-----g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~   69 (348)
                      ||+.||||||++     ++.+|.|.++. +||+|++.|++.|.++|..|.. |.|+|||+|++.||+.||..|.
T Consensus         3 ~Kt~LQE~~Q~~~~~~~~~~~p~Y~~~~~~Gp~H~~~F~v~V~v~g~~~~~-G~G~SKK~AEq~AA~~AL~~L~   75 (85)
T 2khx_A            3 PKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGC-GKGPSIQQAEMGAAMDALEKYN   75 (85)
T ss_dssp             SCHHHHHHHHHCCCSSSCCCCCCEEECCCCCSSSCCCEEEEEEETTEECCC-EEESSHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHhhhhhhcCCCCCceEEEEEeECCCCCCcEEEEEEECCEEEEE-EeeCCHHHHHHHHHHHHHHHHh
Confidence            899999999984     56789999976 8999999999999999987766 5899999999999999997653

>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A

Probab=99.44  E-value=7.3e-14  Score=108.37  Aligned_cols=66  Identities=17%  Similarity=0.200  Sum_probs=60.4

Q ss_pred             hHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHh
Q 018960            2 HKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK   70 (348)
Q Consensus         2 yKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~   70 (348)
                      ||+.||||||+.++. |.|.++. +|+.|.+.|++.|.++| .+.. |.|+|||+|++.||+.||..|..
T Consensus         9 ~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~i~~-~~~~-G~G~sKK~Aeq~AA~~aL~~L~~   75 (76)
T 1ekz_A            9 PISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGS-IVTE-GEGNGKKVSKKRAAEKMLVELQK   75 (76)
T ss_dssp             HHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETT-EEEE-ECCCSTTSSSHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCC-CEEEEEEeECCCCCCcEEEEEEECC-EEEE-EeeCCHHHHHHHHHHHHHHHHhh
Confidence            899999999999998 9999976 79999999999999999 7765 48999999999999999988753

>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.43  E-value=2.8e-13  Score=107.41  Aligned_cols=68  Identities=21%  Similarity=0.316  Sum_probs=61.3

Q ss_pred             ChHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHhh
Q 018960            1 MHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKK   71 (348)
Q Consensus         1 myKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~   71 (348)
                      .||+.||||||+++ .+|.|.++. .|+.|++.|++.|.++| .+.. |.|.|||+|++.||+.||..|...
T Consensus         9 d~Ks~LqE~~q~~~-~~p~Y~~~~~~Gp~h~~~F~~~v~v~~-~~~~-G~G~SKK~Aeq~AA~~aL~~L~~~   77 (84)
T 2dix_A            9 TPIQVLHEYGMKTK-NIPVYECERSDVQIHVPTFTFRVTVGD-ITCT-GEGTSKKLAKHRAAEAAINILKAN   77 (84)
T ss_dssp             CHHHHHHHHHHHTT-CCCEEEEEEEECSSSSCEEEEEEEETT-EEEE-ECSSCTTHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHcC-CCCeEEEEEeECCCCCCeEEEEEEECC-EEEE-eeeCCHHHHHHHHHHHHHHHHhcc
Confidence            38999999999998 689999876 79999999999999999 7765 489999999999999999998653

>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A

Probab=99.41  E-value=3.2e-13  Score=104.04  Aligned_cols=66  Identities=29%  Similarity=0.339  Sum_probs=59.4

Q ss_pred             ChHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHh
Q 018960            1 MHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK   70 (348)
Q Consensus         1 myKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~   70 (348)
                      .||+.||||||+  +.+|.|.+++ +|+.|++.|++.|.++|..| . |.|+|||+|++.||+.||..|..
T Consensus         5 d~Ks~Lqe~~q~--~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~-G~G~SKK~Aeq~AA~~al~~L~~   71 (73)
T 2b7t_A            5 LPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-E-GSGPTKKKAKLHAAEKALRSFVQ   71 (73)
T ss_dssp             SSHHHHHHHHHH--CSCCEEEEEEEECSSSSCEEEEEEESSSSEE-E-EEESSHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcC--CCCceEEEEEeeCCCCCCeEEEEEEECCEEE-E-eecCCHHHHHHHHHHHHHHHHhc
Confidence            489999999997  4599999876 79999999999999999887 4 58999999999999999998864

>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}

Probab=99.41  E-value=5e-15  Score=144.83  Aligned_cols=144  Identities=14%  Similarity=0.051  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHcCCCCCceEEeccCCCC--CCceEEEEEEC------ceEEeCCCCCCchHHHHHHHHHHHHHHHHhhhhc
Q 018960            3 KNRLQEHAQRSGIPLPVYQSHNEGFQH--APKFRASVSVD------GVTYTSPNTFSHRKAAEQDVAKIALECISKKIKD   74 (348)
Q Consensus         3 KS~LqE~~QK~g~~LP~Y~lv~~Gp~H--~~~Ft~SV~vD------GaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~~~   74 (348)
                      ...|.+++.++|  |..|.+.+.|+..  .+....++..|      |++|.|+| +.....|+++..+.+...+......
T Consensus       170 ~~~La~iA~~lg--L~~~l~~~~g~~~~~~~~~~~~ilaD~fEAlIGAIylD~~-~~G~~~a~~fi~~l~~~~l~~~~~~  246 (341)
T 3rv0_A          170 NNNLFDWSTKLN--FTKRLQGNIATPTRVVKDKMSKRYADCVEAYIGALVIDRF-GTEFLDIKEWLEELSEKKLAKSSQM  246 (341)
T ss_dssp             HHHHHHHHHHTT--TTTTTCCSSCCC----CCHHHHHHHHHHHHHHHHHHHHHC-SSTTHHHHHHHHHHTHHHHHCGGGC
T ss_pred             HHHHHHHHHHcC--cHHHhhhcCChhhhccCCccccHHHHHHHHHHHHHhhcCc-cCCHHHHHHHHHHHHHHHHHHHhhh
Confidence            467999999999  7788875433221  11122344555      89999872 1226788888776644444332210


Q ss_pred             CCCCCCCCCCCChhHHHHHHHHHcCCCC-CcEEEeecCCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHh
Q 018960           75 EGCPLINQDTVFCKSILNEFAVKMNLEL-PAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLV  153 (348)
Q Consensus        75 e~~~~~~~~~~npKs~LQE~cQk~~~~~-P~Y~~v~epgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~  153 (348)
                      .   .......|||+.||||||++++.. |.|+++.+.|   .|++.|.|+|+.++.|.|+|||+|||.||+.||+.|..
T Consensus       247 ~---~~~~~~~d~Kt~LqE~~Q~~~~~~~~~Y~~~~~~G---pF~v~v~i~~~~~g~G~G~SKK~AEq~AA~~AL~~L~~  320 (341)
T 3rv0_A          247 V---IKEPLNKNAKNELAELLQINKLGHKLHYRKLTEMP---PFRVEVKIGDILLDEAEGNSIREAEHRAAMKVLENDEL  320 (341)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             h---hccccccCHHHHHHHHHHHcCCCCCceEEEEeccC---CEEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHhhh
Confidence            0   001235799999999999998765 5999887633   29999999999999999999999999999999999875


Q ss_pred             hC
Q 018960          154 TS  155 (348)
Q Consensus       154 ~s  155 (348)
                      ..
T Consensus       321 ~~  322 (341)
T 3rv0_A          321 LR  322 (341)
T ss_dssp             --
T ss_pred             hh
Confidence            53

>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.39  E-value=3.7e-13  Score=109.70  Aligned_cols=68  Identities=19%  Similarity=0.341  Sum_probs=61.6

Q ss_pred             hHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHhh
Q 018960            2 HKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKK   71 (348)
Q Consensus         2 yKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~   71 (348)
                      ||+.||||||++++. |.|.++. .|+.|.+.|++.|.++|..|.. |.|+|||+|++.||+.||..|...
T Consensus        16 ~Kt~LqE~~Q~~~~~-p~Y~~~~~~Gp~H~~~F~v~v~i~g~~~~~-G~G~SKK~Aeq~AA~~AL~~L~~~   84 (97)
T 1x49_A           16 YMDKLNKYRQMHGVA-ITYKELSTSGPPHDRRFTFQVLIDEKEFPE-AKGRSKQEARNAAAKLAVDILDNE   84 (97)
T ss_dssp             HHHHHHHHHHHHTCC-EEEEEEEEESCSSSCEEEEEEEESSCCCCC-EEESSHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHcCCC-CeEEEEEeeCCCCCCcEEEEEEECCEEEEE-EeeCCHHHHHHHHHHHHHHHHHhh
Confidence            899999999999986 7999875 7999999999999999988766 489999999999999999988654

>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A

Probab=99.37  E-value=5e-13  Score=109.34  Aligned_cols=70  Identities=20%  Similarity=0.217  Sum_probs=62.5

Q ss_pred             ChHHHHHHHHHHcCCCCCceEEeccCCCCCCceEEEEEECc-eEEeCCCCCCchHHHHHHHHHHHHHHHHhhh
Q 018960            1 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDG-VTYTSPNTFSHRKAAEQDVAKIALECISKKI   72 (348)
Q Consensus         1 myKS~LqE~~QK~g~~LP~Y~lv~~Gp~H~~~Ft~SV~vDG-aiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~   72 (348)
                      .||+.||||||++ +.+|.|.+...|+.|++.|++.|.++| ..+.. |.|.|||+|++.||+.||..|....
T Consensus         7 d~Kt~LqE~~Qk~-~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~~-G~G~SKK~Aeq~AA~~AL~~L~~~~   77 (99)
T 1whq_A            7 GIKNFLYAWCGKR-KMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGM-GNSTNKKDAQSNAARDFVNYLVRIN   77 (99)
T ss_dssp             SSHHHHHHHHHHT-TCCCEEEEEEEECSSSEEEEEEEECTTCSCCEE-EEESSHHHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHC-CCCCeEEEeeecCCCCCeEEEEEEECCeEEEEE-eccCCHHHHHHHHHHHHHHHHHhhC
Confidence            3899999999999 789999996689999999999999999 56665 4899999999999999999987643

>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.36  E-value=1.2e-12  Score=104.86  Aligned_cols=68  Identities=19%  Similarity=0.215  Sum_probs=61.6

Q ss_pred             ChHHHHHHHHHHcCCCCCceEEeccCCCCCC-ceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHhh
Q 018960            1 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAP-KFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKK   71 (348)
Q Consensus         1 myKS~LqE~~QK~g~~LP~Y~lv~~Gp~H~~-~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~   71 (348)
                      .||+.||||||++++.+ .|. ...|+.|++ +|++.|.++|..|..| .|.|||+|++.||+.||..|...
T Consensus         7 d~Kt~LqE~~Q~~~~~~-~Y~-~~~Gp~H~~~~F~~~v~v~g~~~~~G-~G~SKK~Aeq~AA~~AL~~L~~~   75 (88)
T 1x48_A            7 GYIGLVNSFAQKKKLSV-NYE-QCEPNSELPQRFICKCKIGQTMYGTG-SGVTKQEAKQLAAKEAYQKLLKS   75 (88)
T ss_dssp             CHHHHHHHHHHHTTCCE-EEE-ECCCSSSSSCCEEEEEEESSCEEEEE-EESSHHHHHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHcCCCC-eeE-EeeCCCCCCceEEEEEEECCEEEEEe-ecCCHHHHHHHHHHHHHHHHHhc
Confidence            38999999999999876 999 668999999 7999999999888764 89999999999999999999764

>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}

Probab=99.36  E-value=1.1e-12  Score=105.17  Aligned_cols=68  Identities=31%  Similarity=0.405  Sum_probs=54.4

Q ss_pred             ChHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHhh
Q 018960            1 MHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKK   71 (348)
Q Consensus         1 myKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~   71 (348)
                      .||+.||||||+.+. .|.|.++. +|+.|++.|++.|.++|. +.. |.|+|||+|++.||+.||..|...
T Consensus        15 d~Ks~LqE~~q~~~~-~p~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~-G~G~SKK~Aeq~AA~~aL~~L~~~   83 (90)
T 3llh_A           15 TPISLLQEYGTRIGK-TPVYDLLKAEGQAHQPNFTFRVTVGDT-SCT-GQGPSKKAAKHKAAEVALKHLKGG   83 (90)
T ss_dssp             CHHHHHHHHHHHTTC-CCEEEEEEEC-----CCEEEEEEETTE-EEE-EEESSHHHHHHHHHHHHHHHHC--
T ss_pred             CHHHHHHHHHHhcCC-CCEEEEEEeECCCCCCcEEEEEEECCE-EEE-EEeCCHHHHHHHHHHHHHHHHHhc
Confidence            389999999999985 89999865 899999999999999997 444 589999999999999999988654

>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A

Probab=99.34  E-value=2.9e-12  Score=107.17  Aligned_cols=69  Identities=22%  Similarity=0.210  Sum_probs=61.8

Q ss_pred             hHHHHHHHHHHcCCCCCceEEeccCCCCCCceEEEEEE-----CceEEeCCCCCCchHHHHHHHHHHHHHHHHhhh
Q 018960            2 HKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSV-----DGVTYTSPNTFSHRKAAEQDVAKIALECISKKI   72 (348)
Q Consensus         2 yKS~LqE~~QK~g~~LP~Y~lv~~Gp~H~~~Ft~SV~v-----DGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~   72 (348)
                      ||+.||||||++++ +|.|.+...||.|++.|++.|.+     +|..|.. |.|+|||+|++.||+.||..|....
T Consensus        28 ~Kt~LqE~~Qk~~~-~p~Y~~~~~Gp~H~~~F~~~V~v~~~~~~~~~~~~-G~G~SKK~AEq~AA~~AL~~L~~~~  101 (113)
T 1uil_A           28 AKARLNQYFQKEKI-QGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAR-EHGSNKKLAAQSCALSLVRQLYHLG  101 (113)
T ss_dssp             HHHHHHHHHHHSCC-CCCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEE-CCCSSHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCC-CCeEEEeeECCCCCCcEEEEEEEeeeccCCEEEEE-EeeCCHHHHHHHHHHHHHHHHHhcC
Confidence            79999999999999 99999656899999999999999     5777765 4899999999999999999987653

>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.33  E-value=1.6e-12  Score=105.74  Aligned_cols=66  Identities=33%  Similarity=0.361  Sum_probs=59.8

Q ss_pred             ChHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHh
Q 018960            1 MHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK   70 (348)
Q Consensus         1 myKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~   70 (348)
                      .||+.||||||++  .+|.|.++. .|+.|++.|++.|.++|..| . |.|.|||+|++.||+.||..|..
T Consensus        17 d~Kt~LqE~~Q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~-G~G~SKK~Aeq~AA~~aL~~L~~   83 (97)
T 2dmy_A           17 DLMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-E-ASGPSKKTAKLHVAVKVLQAMGY   83 (97)
T ss_dssp             SCTHHHHHHHHHS--CSCCCEEEEEESCSSSCEEEEEEEETTEEE-E-EEESSHHHHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHhcC--CCceEEEEEeeCCCCCCeEEEEEEECCEEE-E-EeeCCHHHHHHHHHHHHHHHhCC
Confidence            3899999999997  489999987 79999999999999999887 4 58999999999999999998853

>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.32  E-value=3.4e-12  Score=104.14  Aligned_cols=67  Identities=37%  Similarity=0.401  Sum_probs=61.0

Q ss_pred             hHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHhh
Q 018960            2 HKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKK   71 (348)
Q Consensus         2 yKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~   71 (348)
                      ||+.||||||++++.+|.|.++. .|+.  +.|++.|.++|..|..| .|.|||+|++.||+.||..|...
T Consensus        18 ~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~--~~F~~~V~v~g~~~~~G-~G~SKK~Aeq~AA~~AL~~L~~~   85 (98)
T 1x47_A           18 EVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGSG-TASSKKLAKNKAARATLEILIPD   85 (98)
T ss_dssp             HHHHHHHHHHHHTCSCCEEEEEECSSSS--CCEEEEEEETTEEEEEE-EESSHHHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHcCCCCCeEEEEEeECCC--CcEEEEEEECCEEEEEe-eeCCHHHHHHHHHHHHHHHHHhh
Confidence            89999999999999999999987 7887  99999999999888764 89999999999999999988654

>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}

Probab=99.31  E-value=1.5e-12  Score=105.23  Aligned_cols=66  Identities=27%  Similarity=0.277  Sum_probs=60.0

Q ss_pred             ChHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHh
Q 018960            1 MHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK   70 (348)
Q Consensus         1 myKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~   70 (348)
                      ++|+.|+||||+.+  .|.|.+++ +|++|++.|++.|.++|..| . |.|+|||+||+.||+.||..|..
T Consensus        15 ~~K~~LqEl~Qk~~--~p~Y~~v~~~Gp~H~~~F~v~V~v~g~~~-~-G~G~SKK~AEq~AA~~AL~~L~~   81 (91)
T 2l33_A           15 HGKNPVMELNEKRR--GLKYELISETGGSHDKRFVMEVEVDGQKF-Q-GAGSNKKVAKAYAALAALEKLFP   81 (91)
T ss_dssp             STTCHHHHHHHHCS--SCEEEEEEEEECSSCEEEEEEEEETTEEE-E-EEESSHHHHHHHHHHHHHHHHCC
T ss_pred             CCCCHHHHHHHhCC--CCeEEEEEeeCCCCCCeEEEEEEECCEEE-E-eeeCCHHHHHHHHHHHHHHHHhh
Confidence            47899999999998  88999876 79999999999999999887 3 58999999999999999998864

>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1

Probab=99.31  E-value=1.4e-12  Score=106.10  Aligned_cols=67  Identities=15%  Similarity=-0.017  Sum_probs=60.3

Q ss_pred             hHHHHHHHHHHcCCCCCceEEeccCCCCCCceEEEEEECce-EEeCCCCCCchHHHHHHHHHHHHHHHHh
Q 018960            2 HKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGV-TYTSPNTFSHRKAAEQDVAKIALECISK   70 (348)
Q Consensus         2 yKS~LqE~~QK~g~~LP~Y~lv~~Gp~H~~~Ft~SV~vDGa-iY~dgG~GsSKKeAKq~AAk~aL~~L~~   70 (348)
                      ||+.||||+|+.+ .+|.|.++.+||+|++.|++.|.++|. .++. |.|+|||+|+|.||+.||..|.-
T Consensus         8 ~KT~LQE~~Q~~~-~~p~Y~v~~~GpdH~k~F~v~v~i~~~~~~g~-G~G~SKK~AEQ~AA~~AL~~l~~   75 (94)
T 1t4n_A            8 AKRQLYSLIGYAS-LRLHYVTVKKPTAVDPNSIVECRVGDGTVLGT-GVGRNIKIAGIRAAENALRDKKM   75 (94)
T ss_dssp             HHHHHHHHTCSSS-SCCEEEECCCCSSSCCSEEEEEECSSSCEEEE-EEESSHHHHHHHHHHHHHHCHHH
T ss_pred             chHHHHHHHcCCC-CCCEEEEeeeCCCCCCeEEEEEEECCEEEEEE-EEeCCHHHHHHHHHHHHHHHHHH
Confidence            7999999999975 589999998999999999999999998 7766 48999999999999999986643

>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.30  E-value=5.4e-12  Score=107.86  Aligned_cols=67  Identities=28%  Similarity=0.372  Sum_probs=61.8

Q ss_pred             ChHHHHHHHHHHcCCCCCceEEeccCCCCCCceEEEEEECceEEeCCCCC-CchHHHHHHHHHHHHHHHHh
Q 018960            1 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTF-SHRKAAEQDVAKIALECISK   70 (348)
Q Consensus         1 myKS~LqE~~QK~g~~LP~Y~lv~~Gp~H~~~Ft~SV~vDGaiY~dgG~G-sSKKeAKq~AAk~aL~~L~~   70 (348)
                      .||+.||||||++++.+|.|.++..  .|++.|++.|.++|..|..| .| .|||+|++.||+.||..|..
T Consensus        27 d~Kt~LQE~~Qk~~~~~P~Y~~v~~--~H~~~F~v~V~v~g~~~g~G-~G~~SKK~AEQ~AA~~AL~~L~~   94 (128)
T 1whn_A           27 TPKMCLLEWCRREKLPQPVYETVQR--TIDRMFCSVVTVAEQKYQST-LWDKSKKLAEQTAAIVCLRSQGL   94 (128)
T ss_dssp             CHHHHHHHHHHHTTCCCCCCCEEEC--SSSCCEEEEEEETTEEEEES-SCBSSHHHHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHcCCCCCeEEEEee--cCCCcEEEEEEECCEEEEEE-eccCCHHHHHHHHHHHHHHHHhc
Confidence            3899999999999999999999987  89999999999999888764 89 99999999999999999854

>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B

Probab=99.24  E-value=4.4e-12  Score=106.87  Aligned_cols=68  Identities=15%  Similarity=-0.027  Sum_probs=60.7

Q ss_pred             hHHHHHHHHHHcCCCCCceEEeccCCCCCCceEEEEEECce-EEeCCCCCCchHHHHHHHHHHHHHHHHhh
Q 018960            2 HKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGV-TYTSPNTFSHRKAAEQDVAKIALECISKK   71 (348)
Q Consensus         2 yKS~LqE~~QK~g~~LP~Y~lv~~Gp~H~~~Ft~SV~vDGa-iY~dgG~GsSKKeAKq~AAk~aL~~L~~~   71 (348)
                      ||+.||||+|+.+ .+|.|.++.+||+|++.|++.|.++|. .++. |.|.|||+|+|.||+.||..+.-.
T Consensus        10 ~KT~LQE~~Q~~~-~~P~Y~vv~~GPdH~k~F~v~V~i~g~~~~g~-G~G~SKK~AEQ~AA~~AL~~l~~l   78 (117)
T 1t4o_A           10 AKRQLYSLIGYAS-LRLHYVTVKKPTAVDPNSIVECRVGDGTVLGT-GVGRNIKIAGIRAAENALRDKKML   78 (117)
T ss_dssp             HHHHHHHHHCCGG-GCCEEEEEECCCSSCCCEEEEEECTTCCEEEE-EEESSHHHHHHHHHHHHHHCHHHH
T ss_pred             chHHHHHHHcCCC-CCCEEEEeeeCCCCCCeEEEEEEECCEEEEEE-EEeCCHHHHHHHHHHHHHHHHHHH
Confidence            8999999999955 689999988999999999999999998 7766 489999999999999999876543

>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}

Probab=99.21  E-value=1e-11  Score=104.20  Aligned_cols=64  Identities=30%  Similarity=0.341  Sum_probs=57.6

Q ss_pred             ChHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHhh
Q 018960            1 MHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKK   71 (348)
Q Consensus         1 myKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~   71 (348)
                      .||+.||||||+     |.|.+++ +|+.|++.|++.|.++|..| . |.|.|||+||+.||+.||..|...
T Consensus        38 d~Ks~LQE~~q~-----p~Y~~v~~~Gp~H~k~F~v~V~v~g~~~-~-G~G~SKK~AEq~AA~~AL~~L~~~  102 (114)
T 2ljh_A           38 NTVAMLNELRHG-----LIYKLESQTGPVHAPLFTISVEVDGQKY-L-GQGRSKKVARIEAAATALRSFIQF  102 (114)
T ss_dssp             CHHHHHHHHCSC-----CEEEEEEEECCSSSCEEEEEEEETTEEE-E-EEESSHHHHHHHHHHHHHHHHCCC
T ss_pred             CHHHHHHHHccC-----CeEEEEEeeCCCCCCeEEEEEEECCEEE-E-eeeCCHHHHHHHHHHHHHHHHHcC
Confidence            389999999984     7999876 79999999999999999988 4 689999999999999999988653

>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B

Probab=99.18  E-value=4.6e-11  Score=91.35  Aligned_cols=63  Identities=29%  Similarity=0.273  Sum_probs=56.0

Q ss_pred             ChHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHh
Q 018960            1 MHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK   70 (348)
Q Consensus         1 myKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~   70 (348)
                      .|++.|+|||     .+|.|.+++ .|+.|++.|++.|.++|..| . |.|+|||+|++.||+.||..|..
T Consensus         5 np~s~L~E~~-----~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~-G~G~SKK~Aeq~AA~~al~~L~~   68 (71)
T 2b7v_A            5 NPVMILNELR-----PGLKYDFLSESGESHAKSFVMSVVVDGQFF-E-GSGRNKKLAKARAAQSALATVFN   68 (71)
T ss_dssp             CHHHHHHHHC-----CSCEEEEEECCCCTTTCCEEEEEECSSCEE-E-EEESSHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhC-----CCCEEEEEEeECCCCCceEEEEEEECCEEE-E-EeeCCHHHHHHHHHHHHHHHHHh
Confidence            3789999993     489999876 79999999999999999876 3 68999999999999999998865

>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}

Probab=99.17  E-value=5.6e-11  Score=110.46  Aligned_cols=68  Identities=25%  Similarity=0.293  Sum_probs=60.2

Q ss_pred             CCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHhh
Q 018960           84 TVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVT  154 (348)
Q Consensus        84 ~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~  154 (348)
                      ..|+|+.|++|++.  +..|.|+++.+  ++|.+.|+|+|.|+|..+ .|.|+|||+|||.||+.||+.|...
T Consensus         3 ~~~~K~~l~~l~e~--~~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~l~~~   72 (236)
T 2l3j_A            3 PVLPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSFVQF   72 (236)
T ss_dssp             CCCTHHHHHHHHHH--CSSCEEEEEEEESCTTSCEEEEEEEETTEEE-EEEESHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCCcCHHHHHhhc--CCCceEEEEeccCCCCCCeEEEEEEECCEEE-EEecCChHHHHHHHHHHHHHHHHhc
Confidence            35889999999976  56789999875  579999999999999886 8999999999999999999999754

>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A

Probab=99.15  E-value=1.1e-11  Score=115.95  Aligned_cols=98  Identities=18%  Similarity=0.089  Sum_probs=67.2

Q ss_pred             ceEEeCCCCCCchHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCCChhHHHHHHHHHcCCCCCcEEEeecCCCCCcEEEE
Q 018960           41 GVTYTSPNTFSHRKAAEQDVAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSS  120 (348)
Q Consensus        41 GaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~~~e~~~~~~~~~~npKs~LQE~cQk~~~~~P~Y~~v~epgH~~~F~v~  120 (348)
                      |++|.|+|  .+...++++....+...+.....           .+||+.||||+|.... .+.|.... ..|.+.|+|.
T Consensus       166 GAiylD~G--~~~~~~~~~i~~~~~~~i~~~~~-----------~~~k~~l~el~~~~~~-~~~~~~~~-~~~~~~f~v~  230 (265)
T 3c4b_A          166 GAIYMDSG--MSLEVVWQVYYPMMQPLIEKFSA-----------NVPRSPVRELLEMEPE-TAKFSPAE-RTYDGKVRVT  230 (265)
T ss_dssp             HHHHHHTT--SCHHHHHHHHHHHHHHHHHHHHH-----------HSCCCHHHHHHHHCTT-TEEECCCE-ECTTSCEEEE
T ss_pred             hheeeecC--CCHHHHHHHHHHHHHHHHHhHhh-----------cCCCCHHHHHHHhccC-Cceeeecc-ccCCCcEEEE
Confidence            89999976  34577777765554333322110           2344555555554432 22332211 3689999999


Q ss_pred             EEECCEEeeeeecCCHHHHHHHHHHHHHHHHHh
Q 018960          121 LVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLV  153 (348)
Q Consensus       121 V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~  153 (348)
                      |.|+|..++.|.|+|||+|||.||+.||+.|..
T Consensus       231 v~v~~~~~~~G~G~SkK~Aeq~AA~~AL~~l~~  263 (265)
T 3c4b_A          231 VEVVGKGKFKGVGRSYRIAKSAAARRALRSLKA  263 (265)
T ss_dssp             EEETTTEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecceEEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence            999998899999999999999999999999864

>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}

Probab=99.09  E-value=1e-10  Score=90.78  Aligned_cols=65  Identities=28%  Similarity=0.297  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHhh
Q 018960            3 KNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKK   71 (348)
Q Consensus         3 KS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~   71 (348)
                      |+-|++|+|...  .|.|.++. +|+.|++.|++.|.+||..| . |.|+|||+|++.||+.||..|...
T Consensus         7 K~pl~~L~q~~~--~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~-G~G~SKK~Aeq~AA~~al~~L~~~   72 (75)
T 3p1x_A            7 KNPVMELNEKRR--GLKYELISETGGSHDKRFVMEVEVDGQKF-Q-GAGSNKKVAKAYAALAALEKLFPD   72 (75)
T ss_dssp             CCHHHHHHHHST--TCCEEEEEEESCTTSCEEEEEEEETTEEE-E-EEESSHHHHHHHHHHHHHHHHCTT
T ss_pred             CCHHHHHHHcCC--CCEEEEEEeeCCCCCceEEEEEEECCEEE-E-EEECCHHHHHHHHHHHHHHHHHcc
Confidence            345778888764  88999987 89999999999999999888 4 589999999999999999988653

>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A

Probab=99.01  E-value=3e-10  Score=103.81  Aligned_cols=66  Identities=27%  Similarity=0.262  Sum_probs=60.8

Q ss_pred             hHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHH
Q 018960            2 HKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECIS   69 (348)
Q Consensus         2 yKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~   69 (348)
                      ||+.||||||+.++.+|.|.++. .|+.|.+.|++.|.++|. +.. |.|.|||+||+.||+.||..|.
T Consensus       152 pks~LqE~~q~~~~~~p~Y~~~~~~G~~h~~~F~v~v~v~~~-~~~-G~G~skK~Ae~~AA~~AL~~L~  218 (221)
T 2nug_A          152 YKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEY-RTL-GEGKSKKEAEQRAAEELIKLLE  218 (221)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTE-EEE-EEESSHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcCCCCceEEEEEeeCCCCCceEEEEEEECCE-EEE-EecCCHHHHHHHHHHHHHHHhh
Confidence            79999999999998899999876 799999999999999998 766 4899999999999999998875

>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1

Probab=99.01  E-value=3.7e-10  Score=105.44  Aligned_cols=68  Identities=31%  Similarity=0.284  Sum_probs=62.0

Q ss_pred             hHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHh
Q 018960            2 HKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK   70 (348)
Q Consensus         2 yKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~   70 (348)
                      ||+.||||||+.++..|.|.++. .|+.|.+.|++.|.++|..+.. |.|.|||+||+.||+.||..|..
T Consensus       181 pkt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~-G~G~SKK~Aeq~AA~~AL~~L~~  249 (252)
T 1o0w_A          181 YKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIAT-GKGRTKKEAEKEAARIAYEKLLK  249 (252)
T ss_dssp             HHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEE-EEESSHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHcCCCCceEEEEeeeCCCCCCeEEEEEEECCEEEEE-EeeCCHHHHHHHHHHHHHHHHhh
Confidence            79999999999998899999876 7999999999999999988766 48999999999999999998754

>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}

Probab=98.86  E-value=2.4e-10  Score=105.74  Aligned_cols=70  Identities=30%  Similarity=0.328  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHHcCCCCCceEEeccCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHhhh
Q 018960            2 HKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKI   72 (348)
Q Consensus         2 yKS~LqE~~QK~g~~LP~Y~lv~~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~   72 (348)
                      ||+.||||||+.++..|.|.++..|+.|.+.|++.|.++|..+.. |.|.|||+||+.||+.||..|....
T Consensus       164 pkt~Lqe~~q~~~~~~p~Y~~~~~Gp~h~~~F~v~v~v~g~~~~~-G~G~skk~Ae~~AA~~AL~~L~~~~  233 (242)
T 2a11_A          164 WKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGS-GVGRSKKEAEQKAAAAAWKALEVLD  233 (242)
T ss_dssp             -----------------------------------------------------------------------
T ss_pred             hHHHHHHHHHHhCCCCCeEEEeccCCCCCCeEEEEEEECCEEEEE-eeeCCHHHHHHHHHHHHHHHHhhcc
Confidence            799999999999988999999889999999999999999987765 4899999999999999999886543

>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}

Probab=98.85  E-value=2.9e-10  Score=106.29  Aligned_cols=68  Identities=31%  Similarity=0.351  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHh
Q 018960            2 HKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK   70 (348)
Q Consensus         2 yKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~   70 (348)
                      ||+.||||||+.++.+|.|.++. +|+.|.+.|++.|.++|..+.. |.|.|||+||+.||+.||..|..
T Consensus       179 pks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~-G~G~SKK~Aeq~AA~~AL~~L~~  247 (248)
T 3n3w_A          179 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELAR-AIAGSKKEAQQMAAKIALEKLGA  247 (248)
T ss_dssp             ----------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEE-eeeCCHHHHHHHHHHHHHHHHHc
Confidence            79999999999999999999875 7999999999999999987776 48999999999999999988753

>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}

Probab=98.15  E-value=2.8e-07  Score=90.12  Aligned_cols=64  Identities=22%  Similarity=0.142  Sum_probs=0.0

Q ss_pred             hHHHHHHHHHHcCCCC-CceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHhh
Q 018960            2 HKNRLQEHAQRSGIPL-PVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKK   71 (348)
Q Consensus         2 yKS~LqE~~QK~g~~L-P~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~   71 (348)
                      ||+.||||||+.++.+ |.|.++. .|+     |++.|.++|..++. |.|.|||+|++.||+.||..|...
T Consensus       256 ~Kt~LqE~~Q~~~~~~~~~Y~~~~~~Gp-----F~v~v~i~~~~~g~-G~G~SKK~AEq~AA~~AL~~L~~~  321 (341)
T 3rv0_A          256 AKNELAELLQINKLGHKLHYRKLTEMPP-----FRVEVKIGDILLDE-AEGNSIREAEHRAAMKVLENDELL  321 (341)
T ss_dssp             ------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHcCCCCCceEEEEeccCC-----EEEEEEECCEEEEE-EEeCCHHHHHHHHHHHHHHHhhhh
Confidence            7899999999998765 4899876 343     99999999987766 589999999999999999887653

>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A

Probab=97.60  E-value=5e-05  Score=70.74  Aligned_cols=65  Identities=15%  Similarity=0.099  Sum_probs=49.3

Q ss_pred             hHHHHHHHHHHcCCCCCceEEeccCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHh
Q 018960            2 HKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK   70 (348)
Q Consensus         2 yKS~LqE~~QK~g~~LP~Y~lv~~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~   70 (348)
                      +++.|+||.+.... .+.|.  ..|..|++.|++.|.++|..+.. |.|.|||+||+.||+.||..|..
T Consensus       199 ~k~~l~el~~~~~~-~~~~~--~~~~~~~~~f~v~v~v~~~~~~~-G~G~SkK~Aeq~AA~~AL~~l~~  263 (265)
T 3c4b_A          199 PRSPVRELLEMEPE-TAKFS--PAERTYDGKVRVTVEVVGKGKFK-GVGRSYRIAKSAAARRALRSLKA  263 (265)
T ss_dssp             CCCHHHHHHHHCTT-TEEEC--CCEECTTSCEEEEEEETTTEEEE-EEESSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHhccC-Cceee--eccccCCCcEEEEEEEecceEEE-EeeCCHHHHHHHHHHHHHHHHhh
Confidence            45567777776642 22222  24567889999999999987766 48999999999999999998854

>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}

Probab=96.54  E-value=0.0059  Score=49.74  Aligned_cols=71  Identities=8%  Similarity=0.075  Sum_probs=51.3

Q ss_pred             CChhHHHHHHHHHcCC-----CCCcEEEeecCCCCCcEEEEEEECC----EEeeeeecCCHHHHHHHHHHHHHHHHHhhC
Q 018960           85 VFCKSILNEFAVKMNL-----ELPAYSTRQSEALLPVFVSSLVFNG----VTYTGEPGRSKKEAEQLAARAVIRTLLVTS  155 (348)
Q Consensus        85 ~npKs~LQE~cQk~~~-----~~P~Y~~v~epgH~~~F~v~V~I~g----~~~~~G~G~SKKeAKq~AA~~AL~~L~~~s  155 (348)
                      .+.++.|+.||++.-.     ..|.|.+.........| |+|.+-.    +.+....-.||+.||+.||-+|...|....
T Consensus         4 ~sAi~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~~~~~~-c~v~LP~~splr~i~g~~~~sk~~AK~sAAf~Ac~~L~~~G   82 (102)
T 2kou_A            4 GSSISMMYKYCSRLPHDEFFQPKPEFQFKPVDEFGGTI-CRITLPANAPISEIESSLLPSTEAAKKDACLKAVHELHNLG   82 (102)
T ss_dssp             SHHHHHHHHHHTTSSSCTTCCSSCEEEEEECCGGGCEE-EEEECCTTCSSCCEEEEEESSHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhCCCccccCccceEEEeEeecCCCeE-EEEECCCCCCCCeeeCCccccHHHHHHHHHHHHHHHHHHCC
Confidence            4678999999998743     34889876543334567 8888643    122223459999999999999999998764


Q ss_pred             C
Q 018960          156 G  156 (348)
Q Consensus       156 ~  156 (348)
                      .
T Consensus        83 ~   83 (102)
T 2kou_A           83 V   83 (102)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A

Probab=94.77  E-value=0.0018  Score=69.31  Aligned_cols=108  Identities=13%  Similarity=0.070  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHcCCCCCceEEeccCCCCCCceEEEEEEC------ceEEeC-CCCCCchHHHHHHHHHHHHHHHHhhhhcC
Q 018960            3 KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVD------GVTYTS-PNTFSHRKAAEQDVAKIALECISKKIKDE   75 (348)
Q Consensus         3 KS~LqE~~QK~g~~LP~Y~lv~~Gp~H~~~Ft~SV~vD------GaiY~d-gG~GsSKKeAKq~AAk~aL~~L~~~~~~e   75 (348)
                      ...|.++++++|  ++.|++.+.|+.    -..++..|      |++|.| +|    ...|+++..+.    +.......
T Consensus       375 n~~La~~A~~lg--L~~~l~~~~~e~----~~~~ilaD~~EAliGAiylD~~G----~~~a~~~v~~~----~~~~~~~~  440 (756)
T 2qvw_A          375 NEALNYLVQTLG--LPQLAEFSNNLV----AKSKTWADMYEEIVGSIFTGPNG----IYGCEEFLAKT----LMSPEHSK  440 (756)
T ss_dssp             HHHHHHHHHHTT--CTTTCBCCSCC------CCCCHHHHHHHHHHHHHHSTTH----HHHHHHHHHHH----HBCGGGSC
T ss_pred             chHHHHHHHHcC--hHHHhccCCCCC----CcccHHHhHHHHHhCcccccccC----hHHHHHHHHHH----HHhhhhcc
Confidence            367999999999  889999887764    12344555      889998 76    56665554332    22222111


Q ss_pred             CCCCCCCCCCCh-hHHHHHHHHHcCCCCCcEEEeecCCCCCcEEEEEEECCEEeeeeecCCHHHHH---------HHHHH
Q 018960           76 GCPLINQDTVFC-KSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAE---------QLAAR  145 (348)
Q Consensus        76 ~~~~~~~~~~np-Ks~LQE~cQk~~~~~P~Y~~v~epgH~~~F~v~V~I~g~~~~~G~G~SKKeAK---------q~AA~  145 (348)
                      .   ......|| |+.||||+|+++                            ++.|.+.+.+.||         -.||+
T Consensus       441 ~---~~~~~~Dp~Kt~LqE~~q~~~----------------------------ia~~v~~~~~~ak~~~~~~~~~~~aa~  489 (756)
T 2qvw_A          441 T---VGSACPDAVTKASKRVCMGEA----------------------------GAHEFRSLVDYACEQGISVFCSSRVST  489 (756)
T ss_dssp             C------CCCHHHHHHHHHHHTSCC----------------------------CHHHHHHHHHHTTTTTCCCBSSSHHHH
T ss_pred             c---ccccccCchHHHHHHHHhccc----------------------------hhhhhhhhhhHHhhhccccchhhHHHH
Confidence            1   12335788 999999998433                            3457777888887         57999


Q ss_pred             HHHHHHHhhC
Q 018960          146 AVIRTLLVTS  155 (348)
Q Consensus       146 ~AL~~L~~~s  155 (348)
                      .||+.|....
T Consensus       490 ~aL~~l~~~~  499 (756)
T 2qvw_A          490 MFLERLRDIP  499 (756)
T ss_dssp             HHHHHHHHSC
T ss_pred             HHHHhhcccc
Confidence            9999998764

>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.87  E-value=1.1  Score=37.36  Aligned_cols=72  Identities=15%  Similarity=-0.087  Sum_probs=46.6

Q ss_pred             CCCChhHHHHHHHHHcCCCC--CcEEEeecCCCCCcEEEEEEEC--CEEeeeeecCCHHHHHHHHHHHHHHHHHhh
Q 018960           83 DTVFCKSILNEFAVKMNLEL--PAYSTRQSEALLPVFVSSLVFN--GVTYTGEPGRSKKEAEQLAARAVIRTLLVT  154 (348)
Q Consensus        83 ~~~npKs~LQE~cQk~~~~~--P~Y~~v~epgH~~~F~v~V~I~--g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~  154 (348)
                      ....||++|+...|+--...  =.|.+.....+.++=.|++.+.  ...-..|.|+.|.+||++||..|++.|+..
T Consensus        15 ~Fp~PKnLL~~ViqrA~~ss~~kd~l~~~~t~g~k~K~~tl~l~WP~~mef~a~G~rK~eAE~kAAA~AC~kLK~L   90 (119)
T 2db2_A           15 EFPQPKNLLNSVIGRALGISHAKDKLVYVHTNGPKKKKVTLHIKWPKSVEVEGYGSKKIDAERQAAAAACQLFKGW   90 (119)
T ss_dssp             TCSCHHHHHHHHHHHHTTHHHHHHHEEEEECCSSSSEEEEEEECSSSCEEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCChHHHHHHHHHHHHccCchhhheeEEeecCCceeEEEEEecCCCcEEEEeeccchHHHHHHHHHHHHHHHHHc
Confidence            35689999998877653211  1232222222334445666553  333335999999999999999999999864

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=88.43  E-value=0.37  Score=52.55  Aligned_cols=68  Identities=21%  Similarity=0.280  Sum_probs=49.2

Q ss_pred             CCChhHHHHHHHHHcCCCCCcEEEeec--------CC-----CCC-cEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHH
Q 018960           84 TVFCKSILNEFAVKMNLELPAYSTRQS--------EA-----LLP-VFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIR  149 (348)
Q Consensus        84 ~~npKs~LQE~cQk~~~~~P~Y~~v~e--------pg-----H~~-~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~  149 (348)
                      ...||.++++   +.+-. +.|++.+.        ||     ..| .|.|.+.+-+-.+..+..+.||+|||.||+.||+
T Consensus        16 ~~~pk~~~~q---~~~~~-~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~lp~~~~~~~~~~~kkd~eq~aa~~al~   91 (950)
T 3htx_A           16 TPTPKAIIHQ---KFGAK-ASYTVEEVHDSSQSGCPGLAIPQKGPCLYRCHLQLPEFSVVSNVFKKKKDSEQSAAELALD   91 (950)
T ss_dssp             CCCCHHHHHH---TTGGG-SEEEEEEECCSCSCCCTTCCSCCCCCCEEEEEEECSSCEEECCCBSCHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHH---HhCcc-eeeeehhhhcccCCCCCccccCCCCCeeEEEEeeCCCceEecchhhccccHHHHHHHHHHH
Confidence            4468888764   33333 48976432        12     122 7888888877655579999999999999999999


Q ss_pred             HHHhhC
Q 018960          150 TLLVTS  155 (348)
Q Consensus       150 ~L~~~s  155 (348)
                      .|..+.
T Consensus        92 ~~g~~~   97 (950)
T 3htx_A           92 KLGIRP   97 (950)
T ss_dssp             TTTSTT
T ss_pred             HhCCCc
Confidence            998753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	348
d1x48a1	76	d.50.1.1 (A:8-83) dsRNA-dependent protein kinase p	2e-12
d1x48a1	76	d.50.1.1 (A:8-83) dsRNA-dependent protein kinase p	1e-07
d1o0wa2	69	d.50.1.1 (A:168-236) RNase III, C-terminal domain	6e-12
d1o0wa2	69	d.50.1.1 (A:168-236) RNase III, C-terminal domain	2e-11
d1x47a1	85	d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapie	5e-11
d1x47a1	85	d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapie	5e-10
d2nuga2	68	d.50.1.1 (A:151-218) RNase III, C-terminal domain	6e-11
d2nuga2	68	d.50.1.1 (A:151-218) RNase III, C-terminal domain	3e-10
d1t4oa_	81	d.50.1.1 (A:) RNase III, C-terminal domain {Baker'	4e-10
d1qu6a1	90	d.50.1.1 (A:1-90) dsRNA-dependent protein kinase p	6e-10
d1qu6a1	90	d.50.1.1 (A:1-90) dsRNA-dependent protein kinase p	1e-05
d1whqa_	99	d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {	4e-09
d1whqa_	99	d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {	2e-04
d1di2a_	69	d.50.1.1 (A:) Double-stranded RNA-binding protein	7e-09
d1di2a_	69	d.50.1.1 (A:) Double-stranded RNA-binding protein	1e-06
d1x49a1	85	d.50.1.1 (A:8-92) dsRNA-dependent protein kinase p	9e-09
d1x49a1	85	d.50.1.1 (A:8-92) dsRNA-dependent protein kinase p	1e-04
d1uila_	113	d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {	9e-09
d1uila_	113	d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {	2e-05
d1whna_	128	d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like,	1e-08
d1whna_	128	d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like,	2e-08
d1qu6a2	89	d.50.1.1 (A:91-179) dsRNA-dependent protein kinase	2e-08
d1qu6a2	89	d.50.1.1 (A:91-179) dsRNA-dependent protein kinase	2e-04
d1ekza_	76	d.50.1.1 (A:) Staufen, domain III {Fruit fly (Dros	5e-08
d1ekza_	76	d.50.1.1 (A:) Staufen, domain III {Fruit fly (Dros	2e-04
d2cpna1	76	d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Hu	8e-08
d2cpna1	76	d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Hu	2e-05
d2dmya1	84	d.50.1.1 (A:8-91) Spermatid perinuclear RNA-bindin	4e-07
d2dmya1	84	d.50.1.1 (A:8-91) Spermatid perinuclear RNA-bindin	2e-05
d2b7va1	71	d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (R	5e-07
d2b7va1	71	d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (R	4e-06
d2b7ta1	73	d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (R	7e-07
d2b7ta1	73	d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (R	3e-04
d2dixa1	73	d.50.1.1 (A:7-79) Interferon-inducible double stra	7e-07
d2dixa1	73	d.50.1.1 (A:7-79) Interferon-inducible double stra	0.001
d1uhza_	89	d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus muscul	1e-05
d1uhza_	89	d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus muscul	0.001

>d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} Length = 76

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.0 bits (145), Expect = 2e-12
 Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 2/69 (2%)

Query: 3  KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAK 62
             +   AQ+  + +   Q      +   +F     +    Y    +   ++ A+Q  AK
Sbjct: 2  IGLVNSFAQKKKLSVNYEQCE-PNSELPQRFICKCKIGQTMYG-TGSGVTKQEAKQLAAK 59

Query: 63 IALECISKK 71
           A + + K 
Sbjct: 60 EAYQKLLKS 68

>d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} Length = 76

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.2 bits (109), Expect = 1e-07
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 4/75 (5%)

Query: 88  KSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAV 147
             ++N FA K  L +       +  L   F+         Y    G +K+EA+QLAA+  
Sbjct: 2   IGLVNSFAQKKKLSVNYEQCEPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEA 61

Query: 148 IRTLL----VTSGSA 158
            + LL     T+G++
Sbjct: 62  YQKLLKSPPKTAGTS 76

>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 69

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 58.4 bits (141), Expect = 6e-12
 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 88  KSILNEFAVKMNLELPAYSTRQSE--ALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAAR 145
           K+ L E     +   P Y   ++E      +FV  +  NG T     GR+KKEAE+ AAR
Sbjct: 3   KTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAAR 62

Query: 146 AVIRTLL 152
                LL
Sbjct: 63  IAYEKLL 69

>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 69

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 56.8 bits (137), Expect = 2e-11
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 2  HKNRLQEHAQRSGIPLPVYQS-HNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 60
          +K  LQE  Q      P Y     E       F   V V+G T  +    + +K AE++ 
Sbjct: 2  YKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRT-KKEAEKEA 60

Query: 61 AKIALECI 68
          A+IA E +
Sbjct: 61 ARIAYEKL 68

>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Dgcr8 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.2 bits (135), Expect = 5e-11
 Identities = 21/65 (32%), Positives = 33/65 (50%)

Query: 88  KSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAV 147
             IL+E+  ++    P Y+  + E     F +S+  +GVTY      SKK A+  AARA 
Sbjct: 12  VCILHEYMQRVLKVRPVYNFFECENPSEPFGASVTIDGVTYGSGTASSKKLAKNKAARAT 71

Query: 148 IRTLL 152
           +  L+
Sbjct: 72  LEILI 76

>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Dgcr8 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (128), Expect = 5e-10
 Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 2/73 (2%)

Query: 3  KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAK 62
             L E+ QR     PVY    E    +  F ASV++DGVTY S    S +K A+   A+
Sbjct: 12 VCILHEYMQRVLKVRPVYN-FFECENPSEPFGASVTIDGVTYGSGTASS-KKLAKNKAAR 69

Query: 63 IALECISKKIKDE 75
            LE +      +
Sbjct: 70 ATLEILIPDFVKQ 82

>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 68

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

 Score = 55.4 bits (133), Expect = 6e-11
 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 3/67 (4%)

Query: 3  KNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 61
          K  LQE  Q+     P Y+  +  G  H  KF     +             +K AEQ  A
Sbjct: 3  KTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLG--EGKSKKEAEQRAA 60

Query: 62 KIALECI 68
          +  ++ +
Sbjct: 61 EELIKLL 67

>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 68

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

 Score = 53.4 bits (128), Expect = 3e-10
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 3/66 (4%)

Query: 88  KSILNEFAVKMNLELPAYST--RQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAAR 145
           K+IL E   K   E P Y     +       F+           GE G+SKKEAEQ AA 
Sbjct: 3   KTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGE-GKSKKEAEQRAAE 61

Query: 146 AVIRTL 151
            +I+ L
Sbjct: 62  ELIKLL 67

>d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 81

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.5 bits (128), Expect = 4e-10
 Identities = 14/74 (18%), Positives = 22/74 (29%), Gaps = 3/74 (4%)

Query: 2  HKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 61
           K +L      + +    Y +  +     P       V   T        + K A    A
Sbjct: 8  AKRQLYSLIGYASLR-LHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAA 66

Query: 62 KIALECISKKIKDE 75
          + AL    KK+ D 
Sbjct: 67 ENALR--DKKMLDF 78

>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (127), Expect = 6e-10
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 2/78 (2%)

Query: 2  HKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 61
              L  + Q+ G+ L   +  N G  H  +F   V +DG  +      S +K A+   A
Sbjct: 15 FMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRS-KKEAKNAAA 73

Query: 62 KIALECISKKIKDEGCPL 79
          K+A+E ++K+ K    PL
Sbjct: 74 KLAVEILNKE-KKAVSPL 90

>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (95), Expect = 1e-05
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 88  KSILNEFAVKMNLELPAYSTRQS-EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARA 146
              LN +  K  + L       S       F   ++ +G  +    GRSKKEA+  AA+ 
Sbjct: 16  MEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKL 75

Query: 147 VIRTL 151
            +  L
Sbjct: 76  AVEIL 80

>d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.3 bits (122), Expect = 4e-09
 Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 3/78 (3%)

Query: 3  KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAK 62
          KN L     +  +  P Y+    G ++  KF   V V+G  Y      +++K A+ + A+
Sbjct: 9  KNFLYAWCGKRKMT-PAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAAR 67

Query: 63 IALECISK--KIKDEGCP 78
            +  + +  ++K E  P
Sbjct: 68 DFVNYLVRINEVKSEEVP 85

>d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.2 bits (88), Expect = 2e-04
 Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 1/65 (1%)

Query: 88  KSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEP-GRSKKEAEQLAARA 146
           K+ L  +  K  +                F+  +   G  Y G     +KK+A+  AAR 
Sbjct: 9   KNFLYAWCGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARD 68

Query: 147 VIRTL 151
            +  L
Sbjct: 69  FVNYL 73

>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]} Length = 69

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Double-stranded RNA-binding protein A, second dsRBD
species: Xenopus laevis [TaxId: 8355]

 Score = 49.7 bits (118), Expect = 7e-09
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 1  MHKNRLQEHAQRSGIPLPVYQ-SHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQD 59
          M    LQE A + G  LP Y  +   G  H  +F  +  V+    T   + + ++ A++ 
Sbjct: 1  MPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVETG--SGTSKQVAKRV 58

Query: 60 VAKIALECI 68
           A+  L   
Sbjct: 59 AAEKLLTKF 67

>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]} Length = 69

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Double-stranded RNA-binding protein A, second dsRBD
species: Xenopus laevis [TaxId: 8355]

 Score = 43.2 bits (101), Expect = 1e-06
 Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 88  KSILNEFAVKMNLELPAYSTRQSE--ALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAAR 145
              L E AV+    LP Y+  Q         F  +        TG    SK+ A+++AA 
Sbjct: 3   VGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVETGSG-TSKQVAKRVAAE 61

Query: 146 AVIRTL 151
            ++   
Sbjct: 62  KLLTKF 67

>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} Length = 85

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.0 bits (119), Expect = 9e-09
 Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 1/71 (1%)

Query: 3  KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAK 62
           ++L ++ Q  G+ +   +    G  H  +F   V +D   +      S  + A    AK
Sbjct: 10 MDKLNKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSK-QEARNAAAK 68

Query: 63 IALECISKKIK 73
          +A++ +  + K
Sbjct: 69 LAVDILDNENK 79

>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} Length = 85

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.1 bits (88), Expect = 1e-04
 Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 1/71 (1%)

Query: 82  QDTVFCKSILNEFAVKMNLELPAYSTRQS-EALLPVFVSSLVFNGVTYTGEPGRSKKEAE 140
               F    LN++     + +       S       F   ++ +   +    GRSK+EA 
Sbjct: 4   DTPGFYMDKLNKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEAR 63

Query: 141 QLAARAVIRTL 151
             AA+  +  L
Sbjct: 64  NAAAKLAVDIL 74

>d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 113

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.8 bits (121), Expect = 9e-09
 Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 5/72 (6%)

Query: 3  KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVD----GVTYTSPNTFSHRKAAEQ 58
          K RL ++ Q+  I    Y+    G  H   F A +++     G    +    S++K A Q
Sbjct: 29 KARLNQYFQKEKIQ-GEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQ 87

Query: 59 DVAKIALECISK 70
            A   +  +  
Sbjct: 88 SCALSLVRQLYH 99

>d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 113

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.2 bits (96), Expect = 2e-05
 Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 7/70 (10%)

Query: 88  KSILNEFAVKMNLELPAYSTR-QSEALLPVF-----VSSLVFNGVTYTGEPGRSKKEAEQ 141
           K+ LN++  K  ++   Y            F     +         +  E G +KK A Q
Sbjct: 29  KARLNQYFQKEKIQ-GEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQ 87

Query: 142 LAARAVIRTL 151
             A +++R L
Sbjct: 88  SCALSLVRQL 97

>d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 128

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.9 bits (121), Expect = 1e-08
 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 2  HKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 61
           K  L E  +R  +P PVY++              V+V    Y S      +K AEQ  A
Sbjct: 28 PKMCLLEWCRREKLPQPVYETVQRTIDRMFCS--VVTVAEQKYQSTLWDKSKKLAEQTAA 85

Query: 62 KIALE 66
           + L 
Sbjct: 86 IVCLR 90

>d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 128

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.1 bits (119), Expect = 2e-08
 Identities = 20/88 (22%), Positives = 31/88 (35%)

Query: 83  DTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQL 142
             +  K  L E+  +  L  P Y T Q            V      +    +SKK AEQ 
Sbjct: 24  PQITPKMCLLEWCRREKLPQPVYETVQRTIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQT 83

Query: 143 AARAVIRTLLVTSGSATILSEIIKSKGK 170
           AA   +R+  +  G     S  +  + +
Sbjct: 84  AAIVCLRSQGLPEGRLGEESPSLNKRKR 111

>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (116), Expect = 2e-08
 Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 2/76 (2%)

Query: 2  HKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 61
          +   +   AQ+  + +   Q    G      F     +    Y+   T S ++ A+Q  A
Sbjct: 16 YIGLINRIAQKKRLTVNYEQCA-SGVHGPEGFHYKCKMGQKEYSIG-TGSTKQEAKQLAA 73

Query: 62 KIALECISKKIKDEGC 77
          K+A   I  +    GC
Sbjct: 74 KLAYLQILSEETGSGC 89

>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 2e-04
 Identities = 15/65 (23%), Positives = 24/65 (36%)

Query: 88  KSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAV 147
             ++N  A K  L +              F          Y+   G +K+EA+QLAA+  
Sbjct: 17  IGLINRIAQKKRLTVNYEQCASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLA 76

Query: 148 IRTLL 152
              +L
Sbjct: 77  YLQIL 81

>d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 76

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Staufen, domain III
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 47.7 bits (113), Expect = 5e-08
 Identities = 10/68 (14%), Positives = 25/68 (36%), Gaps = 2/68 (2%)

Query: 3  KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAK 62
           +++ E   +  + +       EG  H   F  +  V  +        + +K +++  A+
Sbjct: 10 ISQVHEIGIKRNMTVHFKVLREEGPAHMKNFITACIVGSIVT--EGEGNGKKVSKKRAAE 67

Query: 63 IALECISK 70
            L  + K
Sbjct: 68 KMLVELQK 75

>d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 76

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Staufen, domain III
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.3 bits (86), Expect = 2e-04
 Identities = 13/64 (20%), Positives = 25/64 (39%)

Query: 88  KSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAV 147
            S ++E  +K N+ +     R+          +    G   T   G  KK +++ AA  +
Sbjct: 10  ISQVHEIGIKRNMTVHFKVLREEGPAHMKNFITACIVGSIVTEGEGNGKKVSKKRAAEKM 69

Query: 148 IRTL 151
           +  L
Sbjct: 70  LVEL 73

>d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: TAR RNA-binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (110), Expect = 8e-08
 Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 1/65 (1%)

Query: 2  HKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 61
              LQE   + G  LP Y    E    A +   +++     +    + + +K A+++ A
Sbjct: 11 PVGALQELVVQKGWRLPEYTVTQE-SGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAA 69

Query: 62 KIALE 66
             L 
Sbjct: 70 AKMLL 74

>d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: TAR RNA-binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 2e-05
 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 1/65 (1%)

Query: 88  KSILNEFAVKMNLELPAYS-TRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARA 146
              L E  V+    LP Y+ T++S        +             G SKK A++ AA  
Sbjct: 12  VGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAK 71

Query: 147 VIRTL 151
           ++  +
Sbjct: 72  MLLRV 76

>d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Spermatid perinuclear RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (106), Expect = 4e-07
 Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 5/67 (7%)

Query: 3  KNRLQEHAQRSGIPLPVYQ-SHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 61
           N L    Q    P   Y+     G  HAP F  SV VDG TY +      +K A+  VA
Sbjct: 12 MNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDGTTYEASG--PSKKTAKLHVA 67

Query: 62 KIALECI 68
             L+ +
Sbjct: 68 VKVLQAM 74

>d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Spermatid perinuclear RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (94), Expect = 2e-05
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 115 PVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGS 157
           PVF  S+  +G TY    G SKK A+   A  V++ +   +G 
Sbjct: 39  PVFTMSVDVDGTTYEA-SGPSKKTAKLHVAVKVLQAMGYPTGF 80

>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 71

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.4 bits (105), Expect = 5e-07
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 4/65 (6%)

Query: 88  KSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAV 147
             ILNE    +  +  + S    E+    FV S+V +G  + G  GR+KK A+  AA++ 
Sbjct: 7   VMILNELRPGLKYDFLSES---GESHAKSFVMSVVVDGQFFEGS-GRNKKLAKARAAQSA 62

Query: 148 IRTLL 152
           + T+ 
Sbjct: 63  LATVF 67

>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 71

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.7 bits (98), Expect = 4e-06
 Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 8/67 (11%)

Query: 3  KNRLQEHAQRSGIPLPVYQ-SHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 61
             L E           Y      G  HA  F  SV VDG  +    +  ++K A+   A
Sbjct: 7  VMILNELRPG-----LKYDFLSESGESHAKSFVMSVVVDGQFF--EGSGRNKKLAKARAA 59

Query: 62 KIALECI 68
          + AL  +
Sbjct: 60 QSALATV 66

>d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 73

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.1 bits (104), Expect = 7e-07
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 5/65 (7%)

Query: 3  KNRLQEHAQRSGIPLPVYQ-SHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 61
          KN L +  +    P   Y      G  HAP F  SV V+G  +    +   +K A+   A
Sbjct: 7  KNALMQLNEIK--PGLQYMLLSQTGPVHAPLFVMSVEVNGQVFEG--SGPTKKKAKLHAA 62

Query: 62 KIALE 66
          + AL 
Sbjct: 63 EKALR 67

>d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 73

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.4 bits (84), Expect = 3e-04
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 115 PVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLL 152
           P+FV S+  NG  + G  G +KK+A+  AA   +R+ +
Sbjct: 34  PLFVMSVEVNGQVFEGS-GPTKKKAKLHAAEKALRSFV 70

>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Interferon-inducible double stranded RNA-dependent protein kinase activator A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (103), Expect = 7e-07
 Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 3  KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAK 62
             L E+  ++          ++   H P F   V+V  +T T     + +K A+   A+
Sbjct: 5  IQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCT--GEGTSKKLAKHRAAE 62

Query: 63 IALECI 68
           A+  +
Sbjct: 63 AAINIL 68

>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Interferon-inducible double stranded RNA-dependent protein kinase activator A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (81), Expect = 0.001
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 4/66 (6%)

Query: 88  KSILNEFAVKMNLELPAYSTRQSE--ALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAAR 145
             +L+E+ +K    +P Y   +S+    +P F   +    +T TGE   SKK A+  AA 
Sbjct: 5   IQVLHEYGMKTKN-IPVYECERSDVQIHVPTFTFRVTVGDITCTGEG-TSKKLAKHRAAE 62

Query: 146 AVIRTL 151
           A I  L
Sbjct: 63  AAINIL 68

>d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: staufen homolog 2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.0 bits (95), Expect = 1e-05
 Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 3/77 (3%)

Query: 3  KNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 61
           +RL +  Q      P Y   +  G     +F   V V      +  T  ++K A+++ A
Sbjct: 9  ISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVG--NEVATGTGPNKKIAKKNAA 66

Query: 62 KIALECISKKIKDEGCP 78
          +  L  +  K       
Sbjct: 67 EAMLLQLGYKASTSLQD 83

>d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: staufen homolog 2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.2 bits (80), Expect = 0.001
 Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 1/65 (1%)

Query: 88  KSILNEFAVKMNLELPAYSTRQSEALLPVFVS-SLVFNGVTYTGEPGRSKKEAEQLAARA 146
            S L +       + P Y       +         V  G       G +KK A++ AA A
Sbjct: 9   ISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEA 68

Query: 147 VIRTL 151
           ++  L
Sbjct: 69  MLLQL 73

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	348
d1o0wa2	69	RNase III, C-terminal domain {Thermotoga maritima	99.78
d1x47a1	85	Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]}	99.75
d2dixa1	73	Interferon-inducible double stranded RNA-dependent	99.75
d2nuga2	68	RNase III, C-terminal domain {Aquifex aeolicus [Ta	99.75
d1di2a_	69	Double-stranded RNA-binding protein A, second dsRB	99.75
d2cpna1	76	TAR RNA-binding protein 2 {Human (Homo sapiens) [T	99.74
d1x48a1	76	dsRNA-dependent protein kinase pkr {Mouse (Mus mus	99.72
d1uhza_	89	staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10	99.72
d1qu6a1	90	dsRNA-dependent protein kinase pkr {Human (Homo sa	99.71
d1x49a1	85	dsRNA-dependent protein kinase pkr {Mouse (Mus mus	99.71
d1whqa_	99	ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus	99.69
d1qu6a2	89	dsRNA-dependent protein kinase pkr {Human (Homo sa	99.67
d1ekza_	76	Staufen, domain III {Fruit fly (Drosophila melanog	99.67
d1whna_	128	tRNA-dihydrouridine synthase 2-like, Dus2l (231001	99.63
d1uila_	113	ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus	99.62
d1di2a_	69	Double-stranded RNA-binding protein A, second dsRB	99.59
d2b7va1	71	dsRNA-specific editase 1 {Rat (Rattus norvegicus)	99.55
d1o0wa2	69	RNase III, C-terminal domain {Thermotoga maritima	99.53
d1t4oa_	81	RNase III, C-terminal domain {Baker's yeast (Sacch	99.51
d1x48a1	76	dsRNA-dependent protein kinase pkr {Mouse (Mus mus	99.5
d2nuga2	68	RNase III, C-terminal domain {Aquifex aeolicus [Ta	99.47
d2dixa1	73	Interferon-inducible double stranded RNA-dependent	99.47
d1whqa_	99	ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus	99.45
d2cpna1	76	TAR RNA-binding protein 2 {Human (Homo sapiens) [T	99.44
d1qu6a1	90	dsRNA-dependent protein kinase pkr {Human (Homo sa	99.44
d1uhza_	89	staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10	99.43
d2dmya1	84	Spermatid perinuclear RNA-binding protein {Human (	99.42
d1x49a1	85	dsRNA-dependent protein kinase pkr {Mouse (Mus mus	99.41
d2b7ta1	73	dsRNA-specific editase 1 {Rat (Rattus norvegicus)	99.4
d1qu6a2	89	dsRNA-dependent protein kinase pkr {Human (Homo sa	99.37
d1ekza_	76	Staufen, domain III {Fruit fly (Drosophila melanog	99.35
d1x47a1	85	Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]}	99.34
d1whna_	128	tRNA-dihydrouridine synthase 2-like, Dus2l (231001	99.34
d1uila_	113	ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus	99.27
d2b7va1	71	dsRNA-specific editase 1 {Rat (Rattus norvegicus)	99.11
d1t4oa_	81	RNase III, C-terminal domain {Baker's yeast (Sacch	99.05
d2b7ta1	73	dsRNA-specific editase 1 {Rat (Rattus norvegicus)	99.02
d2dmya1	84	Spermatid perinuclear RNA-binding protein {Human (	98.88

>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.78  E-value=2.1e-19  Score=135.24  Aligned_cols=66  Identities=32%  Similarity=0.333  Sum_probs=63.0

Q ss_pred             ChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHH
Q 018960           86 FCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL  151 (348)
Q Consensus        86 npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L  151 (348)
                      |||+.||||||++++.+|.|+++..  ++|.+.|++.|.|+|..++.|.|+|||+|||.||+.||+.|
T Consensus         1 d~Ks~LqE~~Qk~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~~~~g~g~sKK~Aeq~AA~~aL~~L   68 (69)
T d1o0wa2           1 DYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYEKL   68 (69)
T ss_dssp             CHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHcCCCCCEEEEEEeeCCCCCceEEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHh
Confidence            7999999999999999999999776  57999999999999999999999999999999999999987

>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Dgcr8 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.8e-18  Score=135.78  Aligned_cols=75  Identities=31%  Similarity=0.350  Sum_probs=68.9

Q ss_pred             CCCCCCChhHHHHHHHHHcCCCCCcEEEeecCCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHhh
Q 018960           80 INQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVT  154 (348)
Q Consensus        80 ~~~~~~npKs~LQE~cQk~~~~~P~Y~~v~epgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~  154 (348)
                      .|....|||+.||||||+.++.+|.|.+....+|...|.|+|.|+|..++.|.|+|||.|||.||+.||+.|..+
T Consensus         4 ~n~~~K~p~s~LqE~~Qk~~~~~p~Y~~~~~~g~~~~F~~~v~i~g~~~~~g~G~sKK~Aeq~AA~~AL~~L~~~   78 (85)
T d1x47a1           4 INPNGKSEVCILHEYMQRVLKVRPVYNFFECENPSEPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPD   78 (85)
T ss_dssp             CCTTCCCHHHHHHHHHHHHTCSCCEEEEEECSSSSCCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHCSS
T ss_pred             cCCCCcCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCEEEEEEECCEEEecCCcchHHHHHHHHHHHHHHHHHHH
Confidence            355678999999999999999999999988877888899999999999999999999999999999999999643

>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Interferon-inducible double stranded RNA-dependent protein kinase activator A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2e-18  Score=131.68  Aligned_cols=69  Identities=26%  Similarity=0.366  Sum_probs=63.4

Q ss_pred             CChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHhhC
Q 018960           85 VFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTS  155 (348)
Q Consensus        85 ~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~s  155 (348)
                      .||++.||||||++++ .|.|+++.+  ++|++.|+|.|.|++. ++.|.|+|||+|||.||+.||+.|..++
T Consensus         2 K~Pis~L~E~~qk~~~-~p~y~~~~~~Gp~h~~~F~~~v~v~~~-~~~g~g~sKK~Aeq~AA~~al~~L~~~~   72 (73)
T d2dixa1           2 KTPIQVLHEYGMKTKN-IPVYECERSDVQIHVPTFTFRVTVGDI-TCTGEGTSKKLAKHRAAEAAINILKANA   72 (73)
T ss_dssp             CCHHHHHHHHHHHTTC-CCEEEEEEEECSSSSCEEEEEEEETTE-EEEECSSCTTHHHHHHHHHHHHHHHHTC
T ss_pred             cCHHHHHHHHHHhCCC-CCEEEEeeeeCCCCCcEEEEEEEEEEE-EEEeccccHHHHHHHHHHHHHHHHHhcC
Confidence            6899999999999987 799999876  5799999999999997 6789999999999999999999998765

>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.75  E-value=1.1e-18  Score=131.31  Aligned_cols=66  Identities=33%  Similarity=0.281  Sum_probs=61.2

Q ss_pred             ChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHH
Q 018960           86 FCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLL  152 (348)
Q Consensus        86 npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~  152 (348)
                      |||+.||||||++++.+|.|+++.+  ++|++.|+|.|.|+|. .+.|.|+|||+|||.||+.||+.|.
T Consensus         1 d~Ks~LqE~~q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~-~~~g~g~sKK~Aeq~AA~~aL~~Lk   68 (68)
T d2nuga2           1 DYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEY-RTLGEGKSKKEAEQRAAEELIKLLE   68 (68)
T ss_dssp             CHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHC
T ss_pred             CcHHHHHHHHHHcCCCCCEEEEEEeeCCCCCcEEEEEEEECCE-EEEEecCCHHHHHHHHHHHHHHHhC
Confidence            7999999999999999999998876  5699999999999996 4679999999999999999999883

>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Double-stranded RNA-binding protein A, second dsRBD
species: Xenopus laevis [TaxId: 8355]

Probab=99.75  E-value=2e-18  Score=130.44  Aligned_cols=65  Identities=23%  Similarity=0.272  Sum_probs=60.8

Q ss_pred             hhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHH
Q 018960           87 CKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLL  152 (348)
Q Consensus        87 pKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~  152 (348)
                      ||+.||||||++++++|.|+++.+  ++|++.|+|.|.|+|..+ .|.|+|||+|||+||+.||+.|.
T Consensus         2 Pv~~LqE~~q~~~~~~P~Y~~~~~~G~~h~~~F~~~v~v~~~~~-~g~g~sKK~Aeq~AA~~aL~~L~   68 (69)
T d1di2a_           2 PVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVE-TGSGTSKQVAKRVAAEKLLTKFK   68 (69)
T ss_dssp             HHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHcCCCCCeEEEEEeeCCCCCcceEEEEEEeeEEE-ecCcCcHHHHHHHHHHHHHHHhc
Confidence            899999999999999999999877  469999999999999764 79999999999999999999985

>d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: TAR RNA-binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=4.7e-18  Score=130.38  Aligned_cols=69  Identities=25%  Similarity=0.232  Sum_probs=63.2

Q ss_pred             CCCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHH
Q 018960           82 QDTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL  151 (348)
Q Consensus        82 ~~~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L  151 (348)
                      ....|||+.||||||++++.+|.|+++.+  ++|.+.|+|.|.+++. .+.|.|+|||+|||+||+.||+.|
T Consensus         6 ~~~~npks~LqE~~q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~-~~~g~G~SKK~Aeq~AA~~aL~~L   76 (76)
T d2cpna1           6 QSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRV   76 (76)
T ss_dssp             CCCCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHcCCCCCEEEEeeeeccCCCccEEEEEEecce-eeccccccHHHHHHHHHHHHHHhC
Confidence            44689999999999999999999999876  4699999999999986 478999999999999999999986

>d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=6.7e-18  Score=130.16  Aligned_cols=69  Identities=28%  Similarity=0.398  Sum_probs=63.4

Q ss_pred             hhHHHHHHHHHcCCCCCcEEEeec-CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHhhCC
Q 018960           87 CKSILNEFAVKMNLELPAYSTRQS-EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSG  156 (348)
Q Consensus        87 pKs~LQE~cQk~~~~~P~Y~~v~e-pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~s~  156 (348)
                      |+++||||||++++.+ .|.++.. ++|++.|+|+|.|+|+.|+.|.|+|||+|||+||+.||+.|.....
T Consensus         1 Y~s~L~E~~Qk~~~~~-~~~~~~~G~~h~~~F~~~v~v~~~~~~~g~G~sKK~Aeq~AA~~Al~~L~~~~~   70 (76)
T d1x48a1           1 YIGLVNSFAQKKKLSV-NYEQCEPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLLKSPP   70 (76)
T ss_dssp             HHHHHHHHHHHTTCCE-EEEECCCSSSSSCCEEEEEEESSCEEEEEEESSHHHHHHHHHHHHHHHHHHSCC
T ss_pred             ChHHHHHHHHHhCCCC-ccccCCcCCCCCCcEEEEEEECCEEeCCcCccHHHHHHHHHHHHHHHHHHccCC
Confidence            7999999999999877 7887765 6799999999999999999999999999999999999999988754

>d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: staufen homolog 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=1e-17  Score=132.75  Aligned_cols=71  Identities=20%  Similarity=0.075  Sum_probs=64.9

Q ss_pred             CCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHhh
Q 018960           83 DTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVT  154 (348)
Q Consensus        83 ~~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~  154 (348)
                      ...||++.||||||+++|.+|.|+++.+  ++|.+.|+|.|.|+|..+ +|.|+|||+||+.||+.||+.|...
T Consensus         4 ~~~~P~s~LqE~~Q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~~-~g~g~SKK~Ae~~AA~~aL~~l~~~   76 (89)
T d1uhza_           4 GSSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVA-TGTGPNKKIAKKNAAEAMLLQLGYK   76 (89)
T ss_dssp             SSSCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTSS
T ss_pred             CCCCcHHHHHHHHHhcCCCCCEEEeccccccCCceeEEEEEEEeeeec-cccchHHHHHHHHHHHHHHHHhCcc
Confidence            3579999999999999999999999876  579999999999999875 7999999999999999999999654

>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=5.5e-18  Score=134.44  Aligned_cols=74  Identities=23%  Similarity=0.303  Sum_probs=67.0

Q ss_pred             CCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHhhCCC
Q 018960           83 DTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGS  157 (348)
Q Consensus        83 ~~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~s~~  157 (348)
                      ...|||+.||||||++++ .|.|.++.+  ++|++.|+|.|.|+|..++.|.|+|||+|||.||+.||+.|.....+
T Consensus        11 ~~~~y~s~LqE~~Qk~~~-~p~y~~~~~~Gp~h~~~F~v~v~v~~~~~~~g~G~sKK~Aeq~AA~~aL~~L~~~~~~   86 (90)
T d1qu6a1          11 SAGFFMEELNTYRQKQGV-VLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEILNKEKKA   86 (90)
T ss_dssp             SSCSHHHHHHHHHHHHTC-CCEEEEEESCBTTTBCCEEEEEESSSSCCCEEECCSSHHHHHHHHHHHHHHHHSCCSC
T ss_pred             CCCCHHHHHHHHHHHhCC-CCcEEEEEeeCCCCCceEEEEEEECceeeeccCCCcHHHHHHHHHHHHHHHHHhhCCC
Confidence            346999999999999987 689999877  57999999999999999999999999999999999999999877543

>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=9.3e-18  Score=131.69  Aligned_cols=73  Identities=19%  Similarity=0.233  Sum_probs=66.6

Q ss_pred             CCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHhhCC
Q 018960           83 DTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSG  156 (348)
Q Consensus        83 ~~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~s~  156 (348)
                      .-.|||++||||||++++. |.|+++.+  ++|.+.|+|.|.|+|..++.|.|+|||+|||.||+.||..|.....
T Consensus         5 ~~~~yk~~L~E~~Qk~~~~-~~y~~~~~~Gp~h~~~F~~~v~v~g~~~~~g~g~sKK~Aeq~AA~~aL~~L~~~~~   79 (85)
T d1x49a1           5 TPGFYMDKLNKYRQMHGVA-ITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLAVDILDNENK   79 (85)
T ss_dssp             CTTHHHHHHHHHHHHHTCC-EEEEEEEEESCSSSCEEEEEEEESSCCCCCEEESSHHHHHHHHHHHHHHHHTTTCC
T ss_pred             CchhHHHHHHHHHHhcCCC-CeEEEEEecCCCCCceEEEEEecCceEeeccccccHHHHHHHHHHHHHHHHHHcCc
Confidence            4569999999999999985 79999876  5799999999999999999999999999999999999999987754

>d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=2.9e-17  Score=132.64  Aligned_cols=71  Identities=24%  Similarity=0.306  Sum_probs=63.6

Q ss_pred             CCCChhHHHHHHHHHcCCCCCcEEEeec-CCCCCcEEEEEEECCEEe-eeeecCCHHHHHHHHHHHHHHHHHhh
Q 018960           83 DTVFCKSILNEFAVKMNLELPAYSTRQS-EALLPVFVSSLVFNGVTY-TGEPGRSKKEAEQLAARAVIRTLLVT  154 (348)
Q Consensus        83 ~~~npKs~LQE~cQk~~~~~P~Y~~v~e-pgH~~~F~v~V~I~g~~~-~~G~G~SKKeAKq~AA~~AL~~L~~~  154 (348)
                      ...|||+.||||||++++ .|.|++... ++|.+.|.|+|.|+|..| +.|.|+|||+|||.||+.||+.|...
T Consensus         4 ~~~~~Ks~LqE~~qk~k~-~P~Y~~~~~G~~h~~~F~~~v~v~g~~~~~~g~g~sKK~AEq~AA~~al~~L~~~   76 (99)
T d1whqa_           4 GSSGIKNFLYAWCGKRKM-TPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLVRI   76 (99)
T ss_dssp             CCCSSHHHHHHHHHHTTC-CCEEEEEEEECSSSEEEEEEEECTTCSCCEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHhCCC-CCeEEEecccCCCCceEEEEEEeccccceeccCCccHHHHHHHHHHHHHHHHHHc
Confidence            357999999999999988 599998766 579999999999998765 78999999999999999999999765

>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=3.7e-17  Score=129.27  Aligned_cols=72  Identities=24%  Similarity=0.190  Sum_probs=65.4

Q ss_pred             CCCChhHHHHHHHHHcCCCCCcEEEeec-CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHhhC
Q 018960           83 DTVFCKSILNEFAVKMNLELPAYSTRQS-EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTS  155 (348)
Q Consensus        83 ~~~npKs~LQE~cQk~~~~~P~Y~~v~e-pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~s  155 (348)
                      ...|||++||||||++++. |.|++.+. ++|.+.|.|+|.|+|+.|+.|.|+|||+|||.||+.||..|....
T Consensus        12 ~~~n~~s~L~E~~Qk~~~~-~~y~~~~~g~~h~~~F~~~v~i~g~~~~~g~G~sKK~Akq~AA~~Al~~L~~~~   84 (89)
T d1qu6a2          12 SMGNYIGLINRIAQKKRLT-VNYEQCASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEE   84 (89)
T ss_dssp             CCCCCHHHHHHHHHHSCCE-EEEEEEEECSSSSSEEEEEEEEETTBCCEEEESSHHHHHHHHHHHHHHHHHHCC
T ss_pred             cccCHHHHHHHHHHhcCCC-cceeeeccCCCCCCceEEEEEECCccccccccchHHHHHHHHHHHHHHHHHccC
Confidence            3569999999999999986 58988766 569999999999999999999999999999999999999998765

>d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Staufen, domain III
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.67  E-value=1.9e-17  Score=127.24  Aligned_cols=70  Identities=20%  Similarity=0.261  Sum_probs=63.4

Q ss_pred             CCCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHh
Q 018960           82 QDTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLV  153 (348)
Q Consensus        82 ~~~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~  153 (348)
                      .+..||++.||||||+++++ |.|+++.+  ++|++.|+|+|.|++. ++.|.|.|||+|||.||..||+.|..
T Consensus         4 ~~~k~Pvs~L~E~~q~~~~~-~~y~~~~~~G~~h~~~F~~~v~v~~~-~~~g~G~SKK~Aeq~AA~~al~~L~~   75 (76)
T d1ekza_           4 GDKKSPISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGSI-VTEGEGNGKKVSKKRAAEKMLVELQK   75 (76)
T ss_dssp             CCCSCHHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETTE-EEEECCCSTTSSSHHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHhCCCC-CeEEEEEeeCCCCCeEEEEEEEEeee-EeeeccCcHHHHHHHHHHHHHHHHHc
Confidence            45689999999999999997 79999887  4699999999999886 57899999999999999999999864

>d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=3.2e-16  Score=131.97  Aligned_cols=71  Identities=28%  Similarity=0.280  Sum_probs=64.5

Q ss_pred             CCCChhHHHHHHHHHcCCCCCcEEEeecCCCCCcEEEEEEECCEEeeeeec-CCHHHHHHHHHHHHHHHHHhh
Q 018960           83 DTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPG-RSKKEAEQLAARAVIRTLLVT  154 (348)
Q Consensus        83 ~~~npKs~LQE~cQk~~~~~P~Y~~v~epgH~~~F~v~V~I~g~~~~~G~G-~SKKeAKq~AA~~AL~~L~~~  154 (348)
                      ...|||+.||||||++++.+|.|+++.+ +|++.|.++|.|+|+.|..|.| +|||+|||+||+.||+.|...
T Consensus        24 ~~~~pKs~LqE~~Qk~~~~~P~Y~~~~~-~~~~~F~~~V~v~g~~~~s~~g~~SKK~AEq~AA~~AL~~Lg~~   95 (128)
T d1whna_          24 PQITPKMCLLEWCRREKLPQPVYETVQR-TIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIVCLRSQGLP   95 (128)
T ss_dssp             TTCCHHHHHHHHHHHTTCCCCCCCEEEC-SSSCCEEEEEEETTEEEEESSCBSSHHHHHHHHHHHHHHHHTCS
T ss_pred             CCCCHHHHHHHHHHhcCCCCCeEEEeec-ccCCCCEEEEEECCeEeeccCCcccHHHHHHHHHHHHHHHhCCC
Confidence            4689999999999999999999998775 6889999999999999998765 899999999999999999543

>d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=3.8e-16  Score=128.90  Aligned_cols=69  Identities=23%  Similarity=0.283  Sum_probs=61.8

Q ss_pred             CChhHHHHHHHHHcCCCCCcEEEeec-CCCCCcEEEEEEE-----CCEEeeeeecCCHHHHHHHHHHHHHHHHHhh
Q 018960           85 VFCKSILNEFAVKMNLELPAYSTRQS-EALLPVFVSSLVF-----NGVTYTGEPGRSKKEAEQLAARAVIRTLLVT  154 (348)
Q Consensus        85 ~npKs~LQE~cQk~~~~~P~Y~~v~e-pgH~~~F~v~V~I-----~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~  154 (348)
                      .|||++||||||++++. |.|++... ++|.+.|+|+|.|     ++..+++|.|+|||+|||.||+.||+.|...
T Consensus        26 ~n~Ks~LqE~~Qk~k~~-p~Y~i~~~Gp~H~~~F~~~v~i~~~~~~~~~~~~G~G~sKK~AEq~AA~~~l~~L~~~  100 (113)
T d1uila_          26 ENAKARLNQYFQKEKIQ-GEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLYHL  100 (113)
T ss_dssp             HHHHHHHHHHHHHSCCC-CCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEECCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHhCCCC-CceEEeeeccCCCCeEEEEEEEeeeccCCeEEeecccchHHHHHHHHHHHHHHHHHHc
Confidence            58999999999999875 89997655 6799999999999     5677788999999999999999999999764

>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Double-stranded RNA-binding protein A, second dsRBD
species: Xenopus laevis [TaxId: 8355]

Probab=99.59  E-value=1.3e-15  Score=114.76  Aligned_cols=67  Identities=25%  Similarity=0.305  Sum_probs=62.2

Q ss_pred             ChHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHH
Q 018960            1 MHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECIS   69 (348)
Q Consensus         1 myKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~   69 (348)
                      ||++.||||||+++|.+|.|.++. +|+.|++.|.+.|.++|..+.  |.|+|||+|++.||+.||..|.
T Consensus         1 ~Pv~~LqE~~q~~~~~~P~Y~~~~~~G~~h~~~F~~~v~v~~~~~~--g~g~sKK~Aeq~AA~~aL~~L~   68 (69)
T d1di2a_           1 MPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVET--GSGTSKQVAKRVAAEKLLTKFK   68 (69)
T ss_dssp             CHHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTEEEE--EEESSHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHcCCCCCeEEEEEeeCCCCCcceEEEEEEeeEEEe--cCcCcHHHHHHHHHHHHHHHhc
Confidence            899999999999999999999877 699999999999999997763  5899999999999999999875

>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=3.1e-15  Score=113.61  Aligned_cols=65  Identities=29%  Similarity=0.301  Sum_probs=58.2

Q ss_pred             CCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHhh
Q 018960           84 TVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVT  154 (348)
Q Consensus        84 ~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~  154 (348)
                      ..||++.|||||++     +.|+++.+  ++|.+.|+|.|.|+|..| .|.|+|||+|||+||+.||+.|.+-
T Consensus         3 ~Knpv~~L~E~~~~-----~~y~~~~~~G~~h~~~F~~~v~v~~~~~-~g~G~SKK~Ak~~AA~~aL~~L~~~   69 (71)
T d2b7va1           3 GKNPVMILNELRPG-----LKYDFLSESGESHAKSFVMSVVVDGQFF-EGSGRNKKLAKARAAQSALATVFNL   69 (71)
T ss_dssp             SSCHHHHHHHHCCS-----CEEEEEECCCCTTTCCEEEEEECSSCEE-EEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHccC-----CeEEEeeeeCCCCCCeEEEEEEECCEEE-EecCCCHHHHHHHHHHHHHHHHHcc
Confidence            57999999999863     58999877  469999999999999987 7999999999999999999998753

>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.53  E-value=6.4e-15  Score=110.33  Aligned_cols=67  Identities=30%  Similarity=0.268  Sum_probs=62.1

Q ss_pred             ChHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHH
Q 018960            1 MHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECI   68 (348)
Q Consensus         1 myKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L   68 (348)
                      .||+.|+||||++++.+|.|.++. +|+.|.+.|++.|.++|..|.. |.|+|||+|++.||+.||..|
T Consensus         1 d~Ks~LqE~~Qk~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~~~~-g~g~sKK~Aeq~AA~~aL~~L   68 (69)
T d1o0wa2           1 DYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIAT-GKGRTKKEAEKEAARIAYEKL   68 (69)
T ss_dssp             CHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEE-EEESSHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHcCCCCCEEEEEEeeCCCCCceEEEEEEECCEEEEE-EEeCCHHHHHHHHHHHHHHHh
Confidence            389999999999999999999877 6999999999999999998876 589999999999999999876

>d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.51  E-value=1e-14  Score=113.15  Aligned_cols=71  Identities=21%  Similarity=0.142  Sum_probs=61.2

Q ss_pred             CCCCChhHHHHHHHHHcCCCCCcEEEeecC-CCCCcEEEEEEE-CCEEeeeeecCCHHHHHHHHHHHHHHHHHh
Q 018960           82 QDTVFCKSILNEFAVKMNLELPAYSTRQSE-ALLPVFVSSLVF-NGVTYTGEPGRSKKEAEQLAARAVIRTLLV  153 (348)
Q Consensus        82 ~~~~npKs~LQE~cQk~~~~~P~Y~~v~ep-gH~~~F~v~V~I-~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~  153 (348)
                      ....|+|+.||||||+.++. |.|+++..+ +|...|++.|.+ ++..++.|.|+|||+|||+||+.||+.+..
T Consensus         3 ~id~~~K~~L~e~~~~~g~~-P~Y~~~~~~~~~~~~f~v~~~v~~~~~~~~g~g~SKK~AEq~AA~~aL~~~~~   75 (81)
T d1t4oa_           3 KLDMNAKRQLYSLIGYASLR-LHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKM   75 (81)
T ss_dssp             CCCTTHHHHHHHHHCCGGGC-CEEEEEECCCSSCCCEEEEEECTTCCEEEEEEESSHHHHHHHHHHHHHHCHHH
T ss_pred             ccccCHHHHHHHHHhcCCCC-cEEEEeccCCCCCCCEEEEEEEecCceEEecccchhhHHHHHHHHHHHHhccH
Confidence            45679999999999999986 999999874 577778888887 567778899999999999999999988754

>d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=1.9e-14  Score=110.56  Aligned_cols=69  Identities=16%  Similarity=0.185  Sum_probs=62.9

Q ss_pred             hHHHHHHHHHHcCCCCCceEEeccCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHhhh
Q 018960            2 HKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKI   72 (348)
Q Consensus         2 yKS~LqE~~QK~g~~LP~Y~lv~~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~   72 (348)
                      |++.||||||++++.+ .|.+..+|++|.+.|++.|.+||..|.. |.|.|||+||+.||+.||..|....
T Consensus         1 Y~s~L~E~~Qk~~~~~-~~~~~~~G~~h~~~F~~~v~v~~~~~~~-g~G~sKK~Aeq~AA~~Al~~L~~~~   69 (76)
T d1x48a1           1 YIGLVNSFAQKKKLSV-NYEQCEPNSELPQRFICKCKIGQTMYGT-GSGVTKQEAKQLAAKEAYQKLLKSP   69 (76)
T ss_dssp             HHHHHHHHHHHTTCCE-EEEECCCSSSSSCCEEEEEEESSCEEEE-EEESSHHHHHHHHHHHHHHHHHHSC
T ss_pred             ChHHHHHHHHHhCCCC-ccccCCcCCCCCCcEEEEEEECCEEeCC-cCccHHHHHHHHHHHHHHHHHHccC
Confidence            8999999999999866 6777778999999999999999999976 4899999999999999999998764

>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.47  E-value=2.7e-14  Score=106.88  Aligned_cols=66  Identities=26%  Similarity=0.232  Sum_probs=59.7

Q ss_pred             ChHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHH
Q 018960            1 MHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECI   68 (348)
Q Consensus         1 myKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L   68 (348)
                      -||+.|+||||++++.+|.|.++. .|+.|++.|.+.|.++|..+ . |.|+|||.|++.||+.||..|
T Consensus         1 d~Ks~LqE~~q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~~-~-g~g~sKK~Aeq~AA~~aL~~L   67 (68)
T d2nuga2           1 DYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRT-L-GEGKSKKEAEQRAAEELIKLL   67 (68)
T ss_dssp             CHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTEEE-E-EEESSHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHcCCCCCEEEEEEeeCCCCCcEEEEEEEECCEEE-E-EecCCHHHHHHHHHHHHHHHh
Confidence            389999999999999999999766 79999999999999999654 3 578999999999999999876

>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Interferon-inducible double stranded RNA-dependent protein kinase activator A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=6.8e-14  Score=106.10  Aligned_cols=67  Identities=22%  Similarity=0.354  Sum_probs=60.1

Q ss_pred             hHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHhh
Q 018960            2 HKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKK   71 (348)
Q Consensus         2 yKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~   71 (348)
                      |++.||||||++++ +|.|.+++ +|+.|++.|++.|.+|+.. .. |.|+|||+||+.||+.||..|...
T Consensus         4 Pis~L~E~~qk~~~-~p~y~~~~~~Gp~h~~~F~~~v~v~~~~-~~-g~g~sKK~Aeq~AA~~al~~L~~~   71 (73)
T d2dixa1           4 PIQVLHEYGMKTKN-IPVYECERSDVQIHVPTFTFRVTVGDIT-CT-GEGTSKKLAKHRAAEAAINILKAN   71 (73)
T ss_dssp             HHHHHHHHHHHTTC-CCEEEEEEEECSSSSCEEEEEEEETTEE-EE-ECSSCTTHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCC-CCEEEEeeeeCCCCCcEEEEEEEEEEEE-EE-eccccHHHHHHHHHHHHHHHHHhc
Confidence            79999999999997 89999875 7999999999999999974 44 489999999999999999998753

>d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=2.5e-14  Score=115.20  Aligned_cols=71  Identities=21%  Similarity=0.315  Sum_probs=64.4

Q ss_pred             ChHHHHHHHHHHcCCCCCceEEeccCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHhhh
Q 018960            1 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKI   72 (348)
Q Consensus         1 myKS~LqE~~QK~g~~LP~Y~lv~~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~   72 (348)
                      .||+.||||||++++ +|.|.+...|+.|.+.|.+.|.++|..|...|.|.|||+|++.||+.+|+.|.+..
T Consensus         7 ~~Ks~LqE~~qk~k~-~P~Y~~~~~G~~h~~~F~~~v~v~g~~~~~~g~g~sKK~AEq~AA~~al~~L~~~~   77 (99)
T d1whqa_           7 GIKNFLYAWCGKRKM-TPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLVRIN   77 (99)
T ss_dssp             SSHHHHHHHHHHTTC-CCEEEEEEEECSSSEEEEEEEECTTCSCCEEEEESSHHHHHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHhCCC-CCeEEEecccCCCCceEEEEEEeccccceeccCCccHHHHHHHHHHHHHHHHHHcC
Confidence            489999999999998 69999988999999999999999998776556899999999999999999997754

>d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: TAR RNA-binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.2e-13  Score=105.49  Aligned_cols=66  Identities=23%  Similarity=0.264  Sum_probs=59.6

Q ss_pred             ChHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHH
Q 018960            1 MHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECI   68 (348)
Q Consensus         1 myKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L   68 (348)
                      .||+.||||||+.++.+|.|.++. .|+.|.+.|.+.|.+++..+ . |.|+|||+|++.||+.||..|
T Consensus        10 npks~LqE~~q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~~-~-g~G~SKK~Aeq~AA~~aL~~L   76 (76)
T d2cpna1          10 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIE-I-GSGTSKKLAKRNAAAKMLLRV   76 (76)
T ss_dssp             CHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTEEE-E-EEESSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCCCCCEEEEeeeeccCCCccEEEEEEecceee-c-cccccHHHHHHHHHHHHHHhC
Confidence            389999999999999999999876 89999999999999998653 3 589999999999999999875

>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=4.5e-14  Score=111.52  Aligned_cols=70  Identities=26%  Similarity=0.403  Sum_probs=63.0

Q ss_pred             ChHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHhhh
Q 018960            1 MHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKI   72 (348)
Q Consensus         1 myKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~   72 (348)
                      +|++.||||||++++ +|.|.++. +|+.|++.|++.|.++|..|.. |.|.|||+||+.||+.||..|.++.
T Consensus        14 ~y~s~LqE~~Qk~~~-~p~y~~~~~~Gp~h~~~F~v~v~v~~~~~~~-g~G~sKK~Aeq~AA~~aL~~L~~~~   84 (90)
T d1qu6a1          14 FFMEELNTYRQKQGV-VLKYQELPNSGPPHDRRFTFQVIIDGREFPE-GEGRSKKEAKNAAAKLAVEILNKEK   84 (90)
T ss_dssp             SHHHHHHHHHHHHTC-CCEEEEEESCBTTTBCCEEEEEESSSSCCCE-EECCSSHHHHHHHHHHHHHHHHSCC
T ss_pred             CHHHHHHHHHHHhCC-CCcEEEEEeeCCCCCceEEEEEEECceeeec-cCCCcHHHHHHHHHHHHHHHHHhhC
Confidence            589999999999998 78888765 7999999999999999988865 5899999999999999999987754

>d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: staufen homolog 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=1.4e-13  Score=108.58  Aligned_cols=68  Identities=22%  Similarity=0.183  Sum_probs=62.3

Q ss_pred             ChHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHh
Q 018960            1 MHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK   70 (348)
Q Consensus         1 myKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~   70 (348)
                      .|++.|+||||+++|.+|.|.++. +|+.|.+.|++.|.++|..|.  |.|+|||+||+.||+.||..|..
T Consensus         7 ~P~s~LqE~~Q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~~~--g~g~SKK~Ae~~AA~~aL~~l~~   75 (89)
T d1uhza_           7 GPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVAT--GTGPNKKIAKKNAAEAMLLQLGY   75 (89)
T ss_dssp             CHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTEEEE--EEESSHHHHHHHHHHHHHHHHTS
T ss_pred             CcHHHHHHHHHhcCCCCCEEEeccccccCCceeEEEEEEEeeeecc--ccchHHHHHHHHHHHHHHHHhCc
Confidence            379999999999999999999876 799999999999999998874  58999999999999999998854

>d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Spermatid perinuclear RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=2.2e-13  Score=106.43  Aligned_cols=67  Identities=27%  Similarity=0.284  Sum_probs=58.2

Q ss_pred             CCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHhhC
Q 018960           83 DTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTS  155 (348)
Q Consensus        83 ~~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~s  155 (348)
                      +..||++.|||+     .+.|.|+++.+  ++|.+.|+|.|.|+|..+ .|.|+|||+|||+||+.||+.|....
T Consensus        10 ~~~n~~~~L~e~-----~~~~~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~g~G~SKK~Aeq~AA~~aL~~L~~~~   78 (84)
T d2dmya1          10 DLMNALMRLNQI-----RPGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMGYPT   78 (84)
T ss_dssp             SCTHHHHHHHHH-----SCSCCCEEEEEESCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTCCC
T ss_pred             cccCHHHHHHHh-----CCCCeEEEEEeeCCCCCCeEEEEEEECCEEE-EcCCCCHHHHHHHHHHHHHHHhCCCC
Confidence            356888899887     35679999877  569999999999999987 69999999999999999999997554

>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=1.1e-13  Score=108.17  Aligned_cols=69  Identities=19%  Similarity=0.315  Sum_probs=62.3

Q ss_pred             hHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHhhh
Q 018960            2 HKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKI   72 (348)
Q Consensus         2 yKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~   72 (348)
                      ||+.|+||||++++ .|.|.++. +|+.|++.|++.|.++|..|.. |.|+|||+||+.||+.+|..|....
T Consensus         9 yk~~L~E~~Qk~~~-~~~y~~~~~~Gp~h~~~F~~~v~v~g~~~~~-g~g~sKK~Aeq~AA~~aL~~L~~~~   78 (85)
T d1x49a1           9 YMDKLNKYRQMHGV-AITYKELSTSGPPHDRRFTFQVLIDEKEFPE-AKGRSKQEARNAAAKLAVDILDNEN   78 (85)
T ss_dssp             HHHHHHHHHHHHTC-CEEEEEEEEESCSSSCEEEEEEEESSCCCCC-EEESSHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHhcCC-CCeEEEEEecCCCCCceEEEEEecCceEeec-cccccHHHHHHHHHHHHHHHHHHcC
Confidence            89999999999998 57888775 7999999999999999998865 5899999999999999999987654

>d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.40  E-value=2.1e-13  Score=103.73  Aligned_cols=62  Identities=27%  Similarity=0.320  Sum_probs=51.8

Q ss_pred             ChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHh
Q 018960           86 FCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLV  153 (348)
Q Consensus        86 npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~  153 (348)
                      |+++.|+|+     ...|.|+++.+  ++|++.|+|.|.|+|..| .|.|+|||+|||+||+.||+.|..
T Consensus         8 ~~l~~L~e~-----~~~~~y~~~~~~G~~h~~~F~~~v~v~~~~~-~g~G~SKK~Aeq~AA~~aL~~l~~   71 (73)
T d2b7ta1           8 NALMQLNEI-----KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSFVQ   71 (73)
T ss_dssp             HHHHHHHHH-----CSCCEEEEEEEECSSSSCEEEEEEESSSSEE-EEEESSHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHhc-----CCCCEEEEEEeeCCCCCceEEEEEEECCEEE-EcCCCcHHHHHHHHHHHHHHHHhh
Confidence            444455554     35679999987  469999999999999987 799999999999999999999853

>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.6e-13  Score=106.76  Aligned_cols=70  Identities=20%  Similarity=0.169  Sum_probs=63.1

Q ss_pred             ChHHHHHHHHHHcCCCCCceEEeccCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHhhh
Q 018960            1 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKI   72 (348)
Q Consensus         1 myKS~LqE~~QK~g~~LP~Y~lv~~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~   72 (348)
                      .|++.|+||||++++. +.|.+...|+.|.+.|.++|.+||..|..+ .|+|||+||+.||+.||..|..+.
T Consensus        15 n~~s~L~E~~Qk~~~~-~~y~~~~~g~~h~~~F~~~v~i~g~~~~~g-~G~sKK~Akq~AA~~Al~~L~~~~   84 (89)
T d1qu6a2          15 NYIGLINRIAQKKRLT-VNYEQCASGVHGPEGFHYKCKMGQKEYSIG-TGSTKQEAKQLAAKLAYLQILSEE   84 (89)
T ss_dssp             CCHHHHHHHHHHSCCE-EEEEEEEECSSSSSEEEEEEEEETTBCCEE-EESSHHHHHHHHHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHHhcCCC-cceeeeccCCCCCCceEEEEEECCcccccc-ccchHHHHHHHHHHHHHHHHHccC
Confidence            4899999999999985 478888889999999999999999998664 899999999999999999998754

>d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Staufen, domain III
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.35  E-value=3.1e-13  Score=103.34  Aligned_cols=66  Identities=15%  Similarity=0.202  Sum_probs=58.8

Q ss_pred             hHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHh
Q 018960            2 HKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK   70 (348)
Q Consensus         2 yKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~   70 (348)
                      |++.|+||||+++++ |.|.+++ .|+.|++.|+++|.++|..+ . |.|.|||.||+.||+.+|..|..
T Consensus         9 Pvs~L~E~~q~~~~~-~~y~~~~~~G~~h~~~F~~~v~v~~~~~-~-g~G~SKK~Aeq~AA~~al~~L~~   75 (76)
T d1ekza_           9 PISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGSIVT-E-GEGNGKKVSKKRAAEKMLVELQK   75 (76)
T ss_dssp             HHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETTEEE-E-ECCCSTTSSSHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCCCC-CeEEEEEeeCCCCCeEEEEEEEEeeeEe-e-eccCcHHHHHHHHHHHHHHHHHc
Confidence            789999999999996 7899877 69999999999999998654 3 58999999999999999998854

>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Dgcr8 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.2e-12  Score=102.01  Aligned_cols=68  Identities=35%  Similarity=0.368  Sum_probs=59.5

Q ss_pred             ChHHHHHHHHHHcCCCCCceEEeccCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHh
Q 018960            1 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK   70 (348)
Q Consensus         1 myKS~LqE~~QK~g~~LP~Y~lv~~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~   70 (348)
                      .|++.||||||+.++.+|.|.+.. ++.+...|.+.|.+||..|.. |.|.|||.|++.||+.||+.|..
T Consensus        10 ~p~s~LqE~~Qk~~~~~p~Y~~~~-~~g~~~~F~~~v~i~g~~~~~-g~G~sKK~Aeq~AA~~AL~~L~~   77 (85)
T d1x47a1          10 SEVCILHEYMQRVLKVRPVYNFFE-CENPSEPFGASVTIDGVTYGS-GTASSKKLAKNKAARATLEILIP   77 (85)
T ss_dssp             CHHHHHHHHHHHHTCSCCEEEEEE-CSSSSCCEEEEEEETTEEEEE-EEESSHHHHHHHHHHHHHHHHCS
T ss_pred             CHHHHHHHHHHHhCCCCCCeEEEe-cCCCCCCEEEEEEECCEEEec-CCcchHHHHHHHHHHHHHHHHHH
Confidence            489999999999999999999876 344556799999999999865 58999999999999999998854

>d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=1.3e-12  Score=109.58  Aligned_cols=68  Identities=28%  Similarity=0.296  Sum_probs=61.2

Q ss_pred             ChHHHHHHHHHHcCCCCCceEEeccCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHh
Q 018960            1 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK   70 (348)
Q Consensus         1 myKS~LqE~~QK~g~~LP~Y~lv~~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~   70 (348)
                      +||+.||||||+.++.+|.|.++..+  |++.|.++|.+||..|..++.+.|||+||+.||+.||..|..
T Consensus        27 ~pKs~LqE~~Qk~~~~~P~Y~~~~~~--~~~~F~~~V~v~g~~~~s~~g~~SKK~AEq~AA~~AL~~Lg~   94 (128)
T d1whna_          27 TPKMCLLEWCRREKLPQPVYETVQRT--IDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIVCLRSQGL   94 (128)
T ss_dssp             CHHHHHHHHHHHTTCCCCCCCEEECS--SSCCEEEEEEETTEEEEESSCBSSHHHHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHhcCCCCCeEEEeecc--cCCCCEEEEEECCeEeeccCCcccHHHHHHHHHHHHHHHhCC
Confidence            58999999999999999999988754  778999999999999998755689999999999999999943

>d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.27  E-value=6.3e-12  Score=103.20  Aligned_cols=69  Identities=22%  Similarity=0.196  Sum_probs=60.3

Q ss_pred             hHHHHHHHHHHcCCCCCceEEeccCCCCCCceEEEEEEC-----ceEEeCCCCCCchHHHHHHHHHHHHHHHHhhh
Q 018960            2 HKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVD-----GVTYTSPNTFSHRKAAEQDVAKIALECISKKI   72 (348)
Q Consensus         2 yKS~LqE~~QK~g~~LP~Y~lv~~Gp~H~~~Ft~SV~vD-----GaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~   72 (348)
                      ||+.||||||++++ .|.|.+...|++|.+.|+++|.++     +..+.. |.|.|||+|++.||+.+|..|....
T Consensus        28 ~Ks~LqE~~Qk~k~-~p~Y~i~~~Gp~H~~~F~~~v~i~~~~~~~~~~~~-G~G~sKK~AEq~AA~~~l~~L~~~g  101 (113)
T d1uila_          28 AKARLNQYFQKEKI-QGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAR-EHGSNKKLAAQSCALSLVRQLYHLG  101 (113)
T ss_dssp             HHHHHHHHHHHSCC-CCCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEE-CCCSSHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCC-CCceEEeeeccCCCCeEEEEEEEeeeccCCeEEee-cccchHHHHHHHHHHHHHHHHHHcC
Confidence            69999999999997 489998889999999999999984     444444 5899999999999999999997754

>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.11  E-value=2.5e-11  Score=91.64  Aligned_cols=63  Identities=27%  Similarity=0.249  Sum_probs=55.3

Q ss_pred             hHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHhh
Q 018960            2 HKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKK   71 (348)
Q Consensus         2 yKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~   71 (348)
                      +++.|+|||++.     .|.+++ +|+.|.+.|+++|.+||..|.  |.|.|||+||++||+.||..|...
T Consensus         6 pv~~L~E~~~~~-----~y~~~~~~G~~h~~~F~~~v~v~~~~~~--g~G~SKK~Ak~~AA~~aL~~L~~~   69 (71)
T d2b7va1           6 PVMILNELRPGL-----KYDFLSESGESHAKSFVMSVVVDGQFFE--GSGRNKKLAKARAAQSALATVFNL   69 (71)
T ss_dssp             HHHHHHHHCCSC-----EEEEEECCCCTTTCCEEEEEECSSCEEE--EEESSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCC-----eEEEeeeeCCCCCCeEEEEEEECCEEEE--ecCCCHHHHHHHHHHHHHHHHHcc
Confidence            689999998643     588875 799999999999999999984  589999999999999999988653

>d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.05  E-value=5.1e-11  Score=91.89  Aligned_cols=67  Identities=16%  Similarity=0.023  Sum_probs=55.6

Q ss_pred             hHHHHHHHHHHcCCCCCceEEeccCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHH
Q 018960            2 HKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECIS   69 (348)
Q Consensus         2 yKS~LqE~~QK~g~~LP~Y~lv~~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~   69 (348)
                      +|+.|+||||+.|+. |.|.++..|..|...|.+.|.+.+..+...|.|.|||.|++.||+.||+.+.
T Consensus         8 ~K~~L~e~~~~~g~~-P~Y~~~~~~~~~~~~f~v~~~v~~~~~~~~g~g~SKK~AEq~AA~~aL~~~~   74 (81)
T d1t4oa_           8 AKRQLYSLIGYASLR-LHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKK   74 (81)
T ss_dssp             HHHHHHHHHCCGGGC-CEEEEEECCCSSCCCEEEEEECTTCCEEEEEEESSHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHhcCCCC-cEEEEeccCCCCCCCEEEEEEEecCceEEecccchhhHHHHHHHHHHHHhcc
Confidence            799999999999985 9999999877777788888887543344445899999999999999997643

>d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.02  E-value=2.7e-10  Score=86.22  Aligned_cols=66  Identities=29%  Similarity=0.348  Sum_probs=55.7

Q ss_pred             ChHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHh
Q 018960            1 MHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK   70 (348)
Q Consensus         1 myKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~   70 (348)
                      ++|+-|+++-+-.  ..+.|.+++ +|+.|++.|+++|.+||..|.  |.|+|||+||++||+.+|+.|.+
T Consensus         5 ~pK~~l~~L~e~~--~~~~y~~~~~~G~~h~~~F~~~v~v~~~~~~--g~G~SKK~Aeq~AA~~aL~~l~~   71 (73)
T d2b7ta1           5 LPKNALMQLNEIK--PGLQYMLLSQTGPVHAPLFVMSVEVNGQVFE--GSGPTKKKAKLHAAEKALRSFVQ   71 (73)
T ss_dssp             SSHHHHHHHHHHC--SCCEEEEEEEECSSSSCEEEEEEESSSSEEE--EEESSHHHHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHhcC--CCCEEEEEEeeCCCCCceEEEEEEECCEEEE--cCCCcHHHHHHHHHHHHHHHHhh
Confidence            4677777775543  367899887 699999999999999999883  58999999999999999998864

>d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Spermatid perinuclear RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=2e-09  Score=83.53  Aligned_cols=61  Identities=34%  Similarity=0.422  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHh
Q 018960            3 KNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK   70 (348)
Q Consensus         3 KS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~   70 (348)
                      ++.|+|+   .  +.|.|.++. +|+.|.+.|+++|.++|..|.  |.|+|||.||++||+.||..|..
T Consensus        15 ~~~L~e~---~--~~~~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~--g~G~SKK~Aeq~AA~~aL~~L~~   76 (84)
T d2dmya1          15 LMRLNQI---R--PGLQYKLLSQSGPVHAPVFTMSVDVDGTTYE--ASGPSKKTAKLHVAVKVLQAMGY   76 (84)
T ss_dssp             HHHHHHH---S--CSCCCEEEEEESCSSSCEEEEEEEETTEEEE--EEESSHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHh---C--CCCeEEEEEeeCCCCCCeEEEEEEECCEEEE--cCCCCHHHHHHHHHHHHHHHhCC
Confidence            4455554   2  367899877 699999999999999999884  58999999999999999998853