Citrus Sinensis ID: 018965

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35
Protein Sequence
MVQRKKLRTCRKLVEKPDLFDALPDDLLECVLSKLISSAPSPSDFINVLLTCKRLNRVGLRPTVLSQAGPKALAVKAKNWSDSAHRFLKRCVFAGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFFQSVSKTRTRHQSYYFQLARATDAQIPCSPLLSDFGYNVEAPEVHPVNNFLKEWFESGVSDLGNGLRLCSYSGCGRPETRVHEYRRCSVCGKVNYCSRACQAIDWKTRHKRECVPPLAPLINDGDADGLEGMVEIAPAEFVGGH
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHcccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccHHHHHcccHHHHHHHHHcHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHcccccccccccHHHHHHHHHHHcccccccHHHHHHHHHcccccccHHHHHHHcHHcccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHccccccHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHEHccccHHHEEEccHHccHHHHHHHHHHHHcccHHHHHHHHHEEEEEccccccHHHHHHHHHHcccHHHHHHHHEEEEcccccccccccHHHHHHHHHHHHHHcHHHHHHHHcHcccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHccccccccccccccccHHHcccccccccccHHHHHHHHHHHHccccccccccEcccccccccccccHHHHHccHcccEEEccHHHHHHHHHHHcccccccHHHHHHHcccccccccEEEEEcccccccc
Coil and Loop (DISEMBL)
mvqrkklrtcrklvekpdlfdalpDDLLECVLSKLissapspsdFINVLLTCKrlnrvglrptvlsqagPKALAVKAKNWSDSAHRFLKRCVFAGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKSHAPALYSLAVIQfngsgggknekDLRAGVALCARAASIGHVDAVRELGHclqdgygvrqNIEKGRRLLIEANAREFFQSVSKTRTRHQSYYFQLAratdaqipcspllsdfgynveapevhpvnNFLKEWFESGvsdlgnglrlcsysgcgrpetrvheyrrcsvcgkvnycsracqaidwktrhkrecvpplaplindgdadglegmveiapaefvggh
Flexible Loop (DISEMBL)
mvqrkklrtcrklvekpdlfdalpDDLLECVLSKLIssapspsdFINVLLTCKRLNRVGLRptvlsqagpkALAVKAKNWSDSAHRFLKRCVFAGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFfqsvsktrtrHQSYYFQLARATDAQIPCSPLLSDFGYNVEAPEVHPVNNFLKEWFESGVSDLGNGLRLCSYSGCGRPETRVHEYRRCSVCGKVNYCSRACQAidwktrhkrecvppLAPLINDGDADGLEGMVEIApaefvggh
Low Complexity Region (SEG)
MVQRKKLRTCRKLVEKpdlfdalpddllECVLSKLISSAPSPSDFINVLLTCKRLNRVGLRPTVLSQAGPKALAVKAKNWSDSAHRFLKRCVFAGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFFQSVSKTRTRHQSYYFQLARATDAQIPCSPLLSDFGYNVEAPEVHPVNNFLKEWFESGVSDLGNGLRLCSYSGCGRPETRVHEYRRCSVCGKVNYCSRACQAIDWKTRHKRECVPPLAPLINDGDADGLEGMVEIAPAEFVGGH
Disordered region (IsUnstruct)
*********CRKLVEKPDLFDALPDDLLECVLSKLISSAPSPSDFINVLLTCKRLNRVGLRPTVLSQAGPKALAVKAKNWSDSAHRFLKRCVFAGNLEACYTLGMIRFYCLQNRS****LMA*AAMKSHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFFQSVSKTRTRHQSYYFQLARATDAQIPCSPLLSDFGYNVEAPEVHPVNNFLKEWFESGVSDLGNGLRLCSYSGCGRPETRVHEYRRCSVCGKVNYCSRACQAIDWKTRHKRECVPPLAPLINDGDADGLEGMVEI*********
Disordered Region (DISOPRED)
********************DALPDDLLECVLSKLISSAPSPSDFINVLLTCKRLNRVGLRPTVLSQAGPKALAVKAKNWSDSAHRFLKRCVFAGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFFQSVSKTRTRHQSYYFQLARATDAQIPCSPLLSDFGYNVEAPEVHPVNNFLKEWFESGVSDLGNGLRLCSYSGCGRPETRVHEYRRCSVCGKVNYCSRACQAIDWKTRHKRECVPPLAPL************************
Disordered Region (DISEMBL)
MVQRKKLRTCRKLVEKPDLFDALPDDLLECVLSKLISSAPSPSDFINVLLTCKRLNRVGLRPTVLSQAGPKALAVKAKNWSDSAHRFLKRCVFAGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFFQSVSKTRTRHQSYYFQLARATDAQIPCSPLLSDFGYNVEAPEVHPVNNFLKEWFESGVSDLGNGLRLCSYSGCGRPETRVHEYRRCSVCGKVNYCSRACQAIDWKTRHKRECVPPLAPLINDGDADGLEGMVEIAPAEFVGGH
Disordered Region (DISPRO)
****************PDLFDALPDDLLECVLSKLISSAPSPSDFINVLLTCKRLNRVGLRPTVLSQAGPKALAVKAKNWSDSAHRFLKRCVFAGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFFQSVSKTRTRHQSYYFQLA******IPCSPLLSDFGYNVEAPEVHPVNNFLKEWFESGVSDLGNGLRLCSYSGCGRPETRVHEYRRCSVCGKVNYCSRACQAIDWKTRHKRECVPPLAPLINDGDADGLEGMVEIAPAEF****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVQRKKLRTCRKLVEKPDLFDALPDDLLECVLSKLISSAPSPSDFINVLLTCKRLNRVGLRPTVLSQAGPKALAVKAKNWSDSAHRFLKRCVFAGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFFQSVSKTRTRHQSYYFQLARATDAQIPCSPLLSDFGYNVEAPEVHPVNNFLKEWFESGVSDLGNGLRLCSYSGCGRPETRVHEYRRCSVCGKVNYCSRACQAIDWKTRHKRECVPPLAPLINDGDADGLEGMVEIAPAEFVGGH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	348	2.2.26 [Sep-21-2011]
Q9FYF9	379	F-box protein At1g67340 O	yes	no	0.913	0.839	0.643	1e-116
Q9FK27	336	F-box protein At5g50450 O	no	no	0.864	0.895	0.613	1e-109
Q2YDC9	344	Programmed cell death pro	yes	no	0.209	0.212	0.364	7e-05

>sp|Q9FYF9|FB76_ARATH F-box protein At1g67340 OS=Arabidopsis thaliana GN=At1g67340 PE=1 SV=1

 Score =  419 bits (1076), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 211/328 (64%), Positives = 253/328 (77%), Gaps = 10/328 (3%)

Query: 18  DLFDALPDDLLECVLSKLISSAPSPSDFINVLLTCKRLNRVGLRPTVLSQAGPKALAVKA 77
           DL D++PDDL+  +L KL S++  P+DFINVLLTCKRL  + + P VLS+  PKA+AVKA
Sbjct: 42  DLLDSIPDDLVISILCKLGSTSRCPADFINVLLTCKRLKGLAMNPIVLSRLSPKAIAVKA 101

Query: 78  KNWSDSAHRFLKRCVFAGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKSHAPALYSLA 137
            NWS+ +HRFLKRCV AG+LEACYTLGMIRFYCLQNR +G SLMAKAA+ SHAPALYSLA
Sbjct: 102 HNWSEYSHRFLKRCVDAGSLEACYTLGMIRFYCLQNRGNGASLMAKAAISSHAPALYSLA 161

Query: 138 VIQFNGSGGGKNEKDLRAGVALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLI 197
           VIQFNGSGG KN+KDLRAGVALCARAA +GHVDA+RELGHCLQDGYGV QN+ +GRR L+
Sbjct: 162 VIQFNGSGGSKNDKDLRAGVALCARAAFLGHVDALRELGHCLQDGYGVPQNVSEGRRFLV 221

Query: 198 EANAREFFQSVSKTRTRHQSYYFQLARATDAQIP-----CSPLLSDFGYNVEAPEVHPVN 252
           +ANARE   +V  +  + +S +  L++     +P       PLLSDFG NV APE HP N
Sbjct: 222 QANARE-LAAVLSSGIQARSTWLSLSQPPPPVVPNHGQQTCPLLSDFGCNVPAPETHPAN 280

Query: 253 NFLKEWFESGVSDL-GNGLRLCSYSGCGRPETRVHEYRRCSVCGKVNYCSRACQAIDWKT 311
            FL +WF     D  G+GLRLCS++GCGRPETR HE+RRCSVCG VNYCSRACQA+DWK 
Sbjct: 281 RFLADWFAVRGGDCPGDGLRLCSHAGCGRPETRKHEFRRCSVCGVVNYCSRACQALDWKL 340

Query: 312 RHKRECVPPLAPLINDGDADGLEGMVEI 339
           RHK +C  P+   + +G  DG EG V+I
Sbjct: 341 RHKMDCA-PVQRWLEEG--DGGEGNVQI 365

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FK27|FB342_ARATH F-box protein At5g50450 OS=Arabidopsis thaliana GN=At5g50450 PE=2 SV=1

 Score =  396 bits (1017), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 197/321 (61%), Positives = 238/321 (74%), Gaps = 20/321 (6%)

Query: 20  FDALPDDLLECVLSKLISSAPSPSDFINVLLTCKRLNRVGLRPTVLSQAGPKALAVKAKN 79
           F+ L DDL+  +L KL +SA SPSDF+ VL TCKRLNR+GL P VLS+AG + LAV A+ 
Sbjct: 22  FEDLHDDLIISILRKLATSASSPSDFLTVLSTCKRLNRLGLHPLVLSKAGTQTLAVTAEK 81

Query: 80  WSDSAHRFLKRCVFAGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKSHAPALYSLAVI 139
           WSDS+H+FLK CV AGN++A Y+LGMIRFYCLQN  SG SLMAKAA+KSHAPALYSL+VI
Sbjct: 82  WSDSSHKFLKLCVNAGNIDASYSLGMIRFYCLQNPVSGASLMAKAAIKSHAPALYSLSVI 141

Query: 140 QFNGSGGGKNEKDLRAGVALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEA 199
           QFNGSGG K +K+LRAGVALCAR+A +GHVDA+RELGHCLQDGYGV +++ +GRRLLI+A
Sbjct: 142 QFNGSGGSKTDKNLRAGVALCARSAYLGHVDALRELGHCLQDGYGVPRDVSEGRRLLIQA 201

Query: 200 NAREFFQSVSKTRTRHQSYYFQLARATDAQIPCSPLLSDFGYNVEAPEVHPVNNFLKEWF 259
           NARE   S+          Y  L    + +      L+D    V   E+HPVN FLKEWF
Sbjct: 202 NARELACSLRS--------YLSLKSGDENET-----LTDLSV-VPVQEIHPVNRFLKEWF 247

Query: 260 ESGVSDLGNGLRLCSYSGCGRPETRVHEYRRCSVCGKVNYCSRACQAIDWKTRHKRECVP 319
            SG  DL  GLR+CS+ GCGRPETR HE+RRCSVCGKVNYCSR CQA+DW+ +HK EC P
Sbjct: 248 SSGRVDLAEGLRMCSHGGCGRPETRAHEFRRCSVCGKVNYCSRGCQALDWRAKHKVECTP 307

Query: 320 ------PLAPLINDGDADGLE 334
                   A + +DG+A  +E
Sbjct: 308 LDLWVAAAAEIGDDGEAVAVE 328

Arabidopsis thaliana (taxid: 3702)

>sp|Q2YDC9|PDCD2_BOVIN Programmed cell death protein 2 OS=Bos taurus GN=PDCD2 PE=2 SV=1

 Score = 48.5 bits (114), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 12/85 (14%)

Query: 234 PLLSDFGYNVEAPEVHPVNNFLKEWFESGVSDLGNGLRLCSYSGCGRPETRVHEYRRCSV 293
           P  +DF Y+ E P   P +    E  ES    L +G  LC   GC  P       +RCS 
Sbjct: 101 PRQNDF-YSYEPPSEDPPS----ETGESVYLHLKSGAHLCRVCGCSGP-------KRCSR 148

Query: 294 CGKVNYCSRACQAIDWKTRHKRECV 318
           C K +YCS+  Q++DW+  HK+ C 
Sbjct: 149 CHKAHYCSKEHQSLDWRLGHKQACA 173

May be a DNA-binding protein with a regulatory function. May play an important role in cell death and/or in regulation of cell proliferation.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	348
255540243	349	conserved hypothetical protein [Ricinus	0.991	0.988	0.673	1e-130
224136173	358	predicted protein [Populus trichocarpa]	0.974	0.946	0.646	1e-122
449440552	354	PREDICTED: F-box protein At1g67340-like	0.979	0.963	0.655	1e-120
255547716	394	conserved hypothetical protein [Ricinus	0.945	0.835	0.652	1e-119
224122012	348	f-box family protein [Populus trichocarp	0.908	0.908	0.665	1e-119
356508806	344	PREDICTED: F-box protein At1g67340-like	0.925	0.936	0.640	1e-117
449454830	351	PREDICTED: F-box protein At1g67340-like	0.853	0.846	0.666	1e-115
224053499	403	predicted protein [Populus trichocarpa]	0.916	0.791	0.644	1e-115
18408746	379	zinc finger (MYND type) family protein /	0.913	0.839	0.643	1e-114
357465071	446	F-box family protein [Medicago truncatul	0.893	0.697	0.633	1e-114

>gi|255540243|ref|XP_002511186.1| conserved hypothetical protein [Ricinus communis] gi|223550301|gb|EEF51788.1| conserved hypothetical protein [Ricinus communis]

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 235/349 (67%), Positives = 268/349 (76%), Gaps = 4/349 (1%)

Query: 1   MVQRKKLRTCRKLVEKPDLFDALPDDLLECVLSKLISSAPSPSDFINVLLTCKRLNRVGL 60
           M QRK+ +T R+  EK DLFD LPDD++ C+LSKL SSA  PSDFIN+L TCKRLNR+ L
Sbjct: 1   MYQRKRQKTSRRTPEKSDLFDELPDDIVVCILSKLSSSASCPSDFINILFTCKRLNRLAL 60

Query: 61  RPTVLSQAGPKALAVKAKNWSDSAHRFLKRCVFAGNLEACYTLGMIRFYCLQNRSSGTSL 120
           +P VLS+AGP+  AVKAKNWSDSAHRFLK C+ AGN EA YTLGMIRFYCLQNR  G SL
Sbjct: 61  QPVVLSKAGPQTFAVKAKNWSDSAHRFLKLCINAGNTEASYTLGMIRFYCLQNRGVGASL 120

Query: 121 MAKAAMKSHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASIGHVDAVRELGHCLQ 180
           MAKAA+KSHAPALYSLAV+QFNGSGG K +KDLRAGV+LCARAA +GH+DA+RELGHCLQ
Sbjct: 121 MAKAAIKSHAPALYSLAVMQFNGSGGSKIDKDLRAGVSLCARAAVLGHIDALRELGHCLQ 180

Query: 181 DGYGVRQNIEKGRRLLIEANAREFFQSVSKTRTR--HQSYYFQLARATDAQIPCSPLLSD 238
           DGYGV QNI +GRRLL++ANARE   S+    T   H  ++ Q A     +    PLLSD
Sbjct: 181 DGYGVAQNIAEGRRLLVQANARELASSLRSMLTWQPHNQHHRQYASCEVMESAGCPLLSD 240

Query: 239 FGYNVEAPEVHPVNNFLKEWFESGVSDLGNGLRLCSYSGCGRPETRVHEYRRCSVCGKVN 298
           FG NV A EVHP N FL EWFESG   LG GLRLCS+SGCGRPETR HE+RRCSVCG VN
Sbjct: 241 FGCNVPAREVHPANRFLSEWFESGRGLLGPGLRLCSHSGCGRPETRPHEFRRCSVCGTVN 300

Query: 299 YCSRACQAIDWKTRHKRECVPPLAPLI--NDGDADGLEGMVEIAPAEFV 345
           YCSR CQA+DWK RHK ECVP    L+  +DG  + +  MVEI   E V
Sbjct: 301 YCSRGCQALDWKLRHKMECVPLEQWLVVEDDGHDNEIGAMVEIEEREIV 349

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136173|ref|XP_002322257.1| predicted protein [Populus trichocarpa] gi|222869253|gb|EEF06384.1| predicted protein [Populus trichocarpa]

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 229/354 (64%), Positives = 265/354 (74%), Gaps = 15/354 (4%)

Query: 3   QRKKLRTCRKLVEKPDLFDALPDDLLECVLSKLISSAPSPSDFINVLLTCKRLNRVGLRP 62
           QRK+LR   K+ EKPDLFD LPDDL+  +L KL SSA  PSDFIN+L+TCKRL ++ L P
Sbjct: 5   QRKRLR---KISEKPDLFDQLPDDLVLYILFKLSSSASCPSDFINILITCKRLKQLALDP 61

Query: 63  TVLSQAGPKALAVKAKNWSDSAHRFLKRCVFAGNLEACYTLGMIRFYCLQNRSSGTSLMA 122
            VLS+ G K  AVKA+ WSDSAH+FLK+CV AGN EA YTLGMIRFYCLQNR SG SLMA
Sbjct: 62  LVLSKVGVKTFAVKAERWSDSAHQFLKQCVNAGNREALYTLGMIRFYCLQNRGSGASLMA 121

Query: 123 KAAMKSHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASIGHVDAVRELGHCLQDG 182
           KAA+KSHA ALYSLAVIQFNGSGG KN+K+LRAGVALCARAA +GH+DA+RELGHCLQDG
Sbjct: 122 KAAIKSHASALYSLAVIQFNGSGGSKNDKNLRAGVALCARAAVLGHIDALRELGHCLQDG 181

Query: 183 YGVRQNIEKGRRLLIEANAREFFQSVSKTRT---------RHQSYYFQLARATDAQIPCS 233
           YGV Q+I +GRR L++ANA+E   S+    T           Q+ ++  +    A   C 
Sbjct: 182 YGVPQDIVQGRRFLVQANAKELALSLRSMLTWKPQQQHVDEQQNLHYACSVMGTAITGC- 240

Query: 234 PLLSDFGYNVEAPEVHPVNNFLKEWFESGVSDLGNGLRLCSYSGCGRPETRVHEYRRCSV 293
           PLLSDFG NV A EVHPVN FLKEWFES    L +GLRLCS+SGCGRPETR  E+RRCSV
Sbjct: 241 PLLSDFGCNVPAREVHPVNEFLKEWFESRPGMLDHGLRLCSHSGCGRPETRPREFRRCSV 300

Query: 294 CGKVNYCSRACQAIDWKTRHKRECVP--PLAPLINDGDADGLEGMVEIAPAEFV 345
           CG VNYCSR CQA+DWK RHK ECVP      ++ DG  +G+ GMVEI   E V
Sbjct: 301 CGTVNYCSRGCQALDWKLRHKVECVPMEQWQGVLEDGGDNGIGGMVEIEEGEDV 354

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440552|ref|XP_004138048.1| PREDICTED: F-box protein At1g67340-like [Cucumis sativus] gi|449519733|ref|XP_004166889.1| PREDICTED: F-box protein At1g67340-like [Cucumis sativus]

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 226/345 (65%), Positives = 255/345 (73%), Gaps = 4/345 (1%)

Query: 1   MVQRKKLRTCRKLVEKPDLFDALPDDLLECVLSKLISSAPSPSDFINVLLTCKRLNRVGL 60
           M+  K+ RTCR      DLFD LPDDLL  +LS+L +SA SPSD +N+LLTCKRLNR+ L
Sbjct: 1   MISSKRPRTCRNFTVDSDLFDVLPDDLLIHLLSRLAASASSPSDLLNLLLTCKRLNRLVL 60

Query: 61  RPTVLSQAGPKALAVKAKNWSDSAHRFLKRCVFAGNLEACYTLGMIRFYCLQNRSSGTSL 120
            P VL +AGPKA AV+ +NWSDSAHRFLKRCV AGN EA YTLGMIRFYCL+NR SG SL
Sbjct: 61  NPMVLCKAGPKAFAVRMRNWSDSAHRFLKRCVDAGNSEASYTLGMIRFYCLRNRGSGASL 120

Query: 121 MAKAAMKSHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASIGHVDAVRELGHCLQ 180
           MAKAA+KSHAPALYSLAVIQFNGSGG K++KDL+AGVALCARAA +GHVDA+RELGHCLQ
Sbjct: 121 MAKAAIKSHAPALYSLAVIQFNGSGGSKSDKDLQAGVALCARAAFLGHVDALRELGHCLQ 180

Query: 181 DGYGVRQNIEKGRRLLIEANAREFFQS-VSKTRTRHQSYYFQLARATDAQIPCSPLLSDF 239
           DGYGVRQN ++GRRLL++ANARE     +S + T  Q  + Q     D       LLSDF
Sbjct: 181 DGYGVRQNSDEGRRLLVQANARELATVLLSSSSTWQQQRHNQSGNLPDLTATRCSLLSDF 240

Query: 240 GYNVEAPEVHPVNNFLKEWFES-GVSDLGNGLRLCSYSGCGRPETRVHEYRRCSVCGKVN 298
           G NV APE HPVN FL+EWFES G      GLRLCS+SGCGR ETR HE+RRCSVCG VN
Sbjct: 241 GCNVPAPEPHPVNLFLREWFESEGEVAARVGLRLCSHSGCGRGETRPHEFRRCSVCGTVN 300

Query: 299 YCSRACQAIDWKTRHKRECVPPLAPLINDGDADGLEGMVEIAPAE 343
           YCSR CQA DWK RHK EC         D DA+    M  I   E
Sbjct: 301 YCSRGCQAQDWKVRHKEECTT--VQRWRDEDANNAGEMFGIVEEE 343

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547716|ref|XP_002514915.1| conserved hypothetical protein [Ricinus communis] gi|223545966|gb|EEF47469.1| conserved hypothetical protein [Ricinus communis]

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 220/337 (65%), Positives = 252/337 (74%), Gaps = 8/337 (2%)

Query: 1   MVQRKKLRTCRKLV--EKPDLFDALPDDLLECVLSKLISSAPSPSDFINVLLTCKRLNRV 58
           MV RK+ R   + +  +K D F ALPDDL+ C+L KL SSA  PSDF+NVL TCKRLN +
Sbjct: 41  MVCRKRQRLSPEKIAGDKTDFFYALPDDLVTCILCKLSSSASCPSDFVNVLATCKRLNGL 100

Query: 59  GLRPTVLSQAGPKALAVKAKNWSDSAHRFLKRCVFAGNLEACYTLGMIRFYCLQNRSSGT 118
           GL   VLS+A PK  A+KAKNWSDSAHRFLK C  AGN+EACYTLGMIRFYCLQNR SG 
Sbjct: 101 GLNSIVLSKASPKTFALKAKNWSDSAHRFLKLCADAGNVEACYTLGMIRFYCLQNRGSGA 160

Query: 119 SLMAKAAMKSHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASIGHVDAVRELGHC 178
           SLMAKAA+ SHAPALYSLAVIQFNGSGG KN+KDLRAGVALCARAA +GH+DA+RELGHC
Sbjct: 161 SLMAKAAISSHAPALYSLAVIQFNGSGGSKNDKDLRAGVALCARAAFLGHIDALRELGHC 220

Query: 179 LQDGYGVRQNIEKGRRLLIEANAREFFQSVSK----TRTRHQSYYFQLARAT--DAQIPC 232
           LQDGYGVRQNI +GRR L++ANARE    +S       TR    +   A +    A  P 
Sbjct: 221 LQDGYGVRQNIAEGRRFLVQANARELAAVLSNPNSDLNTRAWVNWNPHAHSNHRHASGPG 280

Query: 233 SPLLSDFGYNVEAPEVHPVNNFLKEWFESGVSDLGNGLRLCSYSGCGRPETRVHEYRRCS 292
            PLLSDFG NV APE HP + F+ +WF +     G GLRLCS+ GCGRPETR HE+RRCS
Sbjct: 281 CPLLSDFGCNVPAPEAHPASRFMADWFATRGGSPGQGLRLCSHVGCGRPETRKHEFRRCS 340

Query: 293 VCGKVNYCSRACQAIDWKTRHKRECVPPLAPLINDGD 329
           VCG VNYCSRACQA+DWK RHK EC P    ++ DG+
Sbjct: 341 VCGAVNYCSRACQALDWKLRHKEECAPVERWVVEDGE 377

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122012|ref|XP_002318728.1| f-box family protein [Populus trichocarpa] gi|222859401|gb|EEE96948.1| f-box family protein [Populus trichocarpa]

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 215/323 (66%), Positives = 246/323 (76%), Gaps = 7/323 (2%)

Query: 1   MVQRKKLRTCRKLVEKPDLFDALPDDLLECVLSKLISSAPSPSDFINVLLTCKRLNRVGL 60
           M QRK+LRT   + EKPD FD LPDDL+  +L KL SSA  PSDFINVL+TCK L R+  
Sbjct: 1   MAQRKRLRT---ITEKPDYFDQLPDDLVLNILCKLSSSASCPSDFINVLITCKTLKRLAT 57

Query: 61  RPTVLSQAGPKALAVKAKNWSDSAHRFLKRCVFAGNLEACYTLGMIRFYCLQNRSSGTSL 120
            P VLS+AG K  A+KA+ WSDSAH+FLK+CV AGN EA YTLGMIRFYCLQNR SG SL
Sbjct: 58  NPLVLSKAGAKMFAMKAERWSDSAHQFLKQCVKAGNSEASYTLGMIRFYCLQNRGSGASL 117

Query: 121 MAKAAMKSHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASIGHVDAVRELGHCLQ 180
           MAKAA+KSHA A+YSLAVIQFNGSGG K +K+LRAGVALCARA+ +GHVDA+RELGHCLQ
Sbjct: 118 MAKAAIKSHALAMYSLAVIQFNGSGGSKTDKNLRAGVALCARASVLGHVDALRELGHCLQ 177

Query: 181 DGYGVRQNIEKGRRLLIEANAREFFQSVSKTRT----RHQSYYFQLARATDAQIPCSPLL 236
           DGYGV QNI +GRRLL++ANA+E   S+    T    + Q             I   PLL
Sbjct: 178 DGYGVPQNIVEGRRLLVQANAKELALSLRSMMTWKPQQQQQNLHHACTVMGTAITGCPLL 237

Query: 237 SDFGYNVEAPEVHPVNNFLKEWFESGVSDLGNGLRLCSYSGCGRPETRVHEYRRCSVCGK 296
           SDFG N+ A EVHP + FL+EWFES    L +GLRLCS+SGCGRPETR HE+RRCSVCG 
Sbjct: 238 SDFGCNLLAREVHPASKFLREWFESRSGALDDGLRLCSHSGCGRPETRTHEFRRCSVCGT 297

Query: 297 VNYCSRACQAIDWKTRHKRECVP 319
           VNYCSR CQA+DWK RHK ECVP
Sbjct: 298 VNYCSRGCQALDWKARHKVECVP 320

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508806|ref|XP_003523145.1| PREDICTED: F-box protein At1g67340-like [Glycine max]

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 214/334 (64%), Positives = 250/334 (74%), Gaps = 12/334 (3%)

Query: 8   RTCRKLVEKPDLFDALPDDLLECVLSKLISSAPSPSDFINVLLTCKRLNRVGLRPTVLSQ 67
           R C+   +K DLF+ LPDDLL  +LSKL S+A SPSDFIN++LTCKRLNR+GL   VLS+
Sbjct: 3   RPCKHSKKKHDLFECLPDDLLVLILSKLSSTASSPSDFINIILTCKRLNRLGLHRLVLSK 62

Query: 68  AGPKALAVKAKNWSDSAHRFLKRCVFAGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK 127
           A  K  A+K KNWS+ AH FLK C  AGN++ACYTLGMIRFYCL+NR SG SLMAKAAMK
Sbjct: 63  AASKLFAIKPKNWSEYAHSFLKHCANAGNVDACYTLGMIRFYCLKNRGSGLSLMAKAAMK 122

Query: 128 SHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASIGHVDAVRELGHCLQDGYGVRQ 187
            HAPALYSLAVIQFNGSGG K +KDLRAGVAL ARA+ +GH+DA+RELGHCLQDGYGVRQ
Sbjct: 123 LHAPALYSLAVIQFNGSGGSKRDKDLRAGVALSARASLLGHIDALRELGHCLQDGYGVRQ 182

Query: 188 NIEKGRRLLIEANAREF---FQSVSKTRTRHQSYYF------QLARATDAQIPCSPLLSD 238
           N+ +GRRLL++AN RE     ++V+ +R    S         Q     +  +   PLLSD
Sbjct: 183 NVTEGRRLLVQANVRELAYVLRAVAPSRCYETSLLTWRALRCQRNNNNNNAVVACPLLSD 242

Query: 239 FGYNVEAPEVHPVNNFLKEWFESGVSDLGNGLRLCSYSGCGRPETRVHEYRRCSVCGKVN 298
           +GYNV APEV P N FL+EWFESG   L  GLRLC++ GCGRPETR HE+RRCSVCGKVN
Sbjct: 243 YGYNVAAPEVQPANWFLREWFESGKGKLEEGLRLCAHIGCGRPETRPHEFRRCSVCGKVN 302

Query: 299 YCSRACQAIDWKTRHKRECVPPLAPLINDGDADG 332
           YCSR CQA+DWK RHK EC P     + DG  DG
Sbjct: 303 YCSRGCQALDWKLRHKMECSP---VEMYDGGVDG 333

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454830|ref|XP_004145157.1| PREDICTED: F-box protein At1g67340-like [Cucumis sativus] gi|449474252|ref|XP_004154118.1| PREDICTED: F-box protein At1g67340-like [Cucumis sativus]

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 202/303 (66%), Positives = 237/303 (78%), Gaps = 6/303 (1%)

Query: 18  DLFDALPDDLLECVLSKLISSAPSPSDFINVLLTCKRLNRVGLRPTVLSQAGPKALAVKA 77
           DLFD LPDDL+  VL KL ++A SP D +NV++TCKR NR+ L P VLS+AGPKA  ++ 
Sbjct: 19  DLFDGLPDDLVVVVLGKLSATASSPLDLVNVMITCKRFNRLALHPIVLSKAGPKAFEIQT 78

Query: 78  KNWSDSAHRFLKRCVFAGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKSHAPALYSLA 137
           KNWS+S HRFLK CV AGN+EACYTLGMI FYCL+NR +G SLMAKAA+KSH  ALYSLA
Sbjct: 79  KNWSESTHRFLKLCVSAGNVEACYTLGMIEFYCLKNRGTGASLMAKAAIKSHPLALYSLA 138

Query: 138 VIQFNGSGGGKNEKDLRAGVALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLI 197
           ++QFNGSGG K++K+LRAGVALC RAA +GH+DA+RELGHCLQDGYGV QN+ +GRRLLI
Sbjct: 139 IVQFNGSGGSKSDKNLRAGVALCGRAAYLGHIDALRELGHCLQDGYGVPQNVSEGRRLLI 198

Query: 198 EANAREF-FQSVSKTRTRHQSYYFQLARATDAQIPCSPLLSDFGYNVEAPEVHPVNNFLK 256
           EANARE  + + S  R  H S + Q   ATD+      LLSDFG N  APE HP N FL+
Sbjct: 199 EANARELAYITNSSLRRLHCSRHRQ--SATDSG---GSLLSDFGCNFPAPEAHPANQFLR 253

Query: 257 EWFESGVSDLGNGLRLCSYSGCGRPETRVHEYRRCSVCGKVNYCSRACQAIDWKTRHKRE 316
           +WF SG   +  GLRLCS SGCGRPETR+HE+RRCSVCG VNYCSR CQA+DWK RHK E
Sbjct: 254 DWFASGRGSIAEGLRLCSNSGCGRPETRLHEFRRCSVCGNVNYCSRGCQALDWKLRHKTE 313

Query: 317 CVP 319
           C P
Sbjct: 314 CAP 316

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053499|ref|XP_002297844.1| predicted protein [Populus trichocarpa] gi|222845102|gb|EEE82649.1| predicted protein [Populus trichocarpa]

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/329 (64%), Positives = 247/329 (75%), Gaps = 10/329 (3%)

Query: 1   MVQRKKLRTCRKLVE-KPDLFDALPDDLLECVLSKLISSAPSPSDFINVLLTCKRLNRVG 59
           MV RK+ R      + + DLF++LPDDL+  +L KL SSA  PSDFINVL+TC+RLN +G
Sbjct: 45  MVCRKRNRLVSTGKKGETDLFESLPDDLVISILCKLSSSASCPSDFINVLITCRRLNGLG 104

Query: 60  LRPTVLSQAGPKALAVKAKNWSDSAHRFLKRCVFAGNLEACYTLGMIRFYCLQNRSSGTS 119
           L   VLS+A PK+ A+KA NWSDSAHRFLK C  AGN EACYTLGMIRFYCLQNR SG S
Sbjct: 105 LHSLVLSKASPKSFAIKANNWSDSAHRFLKLCADAGNAEACYTLGMIRFYCLQNRGSGAS 164

Query: 120 LMAKAAMKSHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASIGHVDAVRELGHCL 179
           LMAKAA+ SHAPALYSLAVIQFNGSGG K++KDLRAGVALCARAA +GH+DA+RELGHCL
Sbjct: 165 LMAKAAISSHAPALYSLAVIQFNGSGGSKSDKDLRAGVALCARAAFLGHIDALRELGHCL 224

Query: 180 QDGYGVRQNIEKGRRLLIEANAREFFQSVSK------TR---TRHQSYYFQLARATDAQI 230
           QDGYGVRQN+ +GRR L++ANARE    +S       TR   T +   +      ++   
Sbjct: 225 QDGYGVRQNVTEGRRFLVQANARELAAVLSNPDSGLPTRAWLTWNPHAHPNHRHPSENGP 284

Query: 231 PCSPLLSDFGYNVEAPEVHPVNNFLKEWFESGVSDLGNGLRLCSYSGCGRPETRVHEYRR 290
              PLLSDFG NV APE HP + F+ EWF       G+GLRLCS++GCGRPETR HE+RR
Sbjct: 285 SGCPLLSDFGCNVPAPEAHPASRFMTEWFAIRGGSAGSGLRLCSHTGCGRPETRKHEFRR 344

Query: 291 CSVCGKVNYCSRACQAIDWKTRHKRECVP 319
           CSVCG VNYCSRACQA+DWK RHK EC P
Sbjct: 345 CSVCGAVNYCSRACQALDWKLRHKEECAP 373

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18408746|ref|NP_564894.1| zinc finger (MYND type) family protein / F-box family protein [Arabidopsis thaliana] gi|75173237|sp|Q9FYF9.1|FB76_ARATH RecName: Full=F-box protein At1g67340 gi|9828618|gb|AAG00241.1|AC002130_6 F1N21.16 [Arabidopsis thaliana] gi|16209726|gb|AAL14418.1| At1g67340/F1N21_16 [Arabidopsis thaliana] gi|20260406|gb|AAM13101.1| unknown protein [Arabidopsis thaliana] gi|23197876|gb|AAN15465.1| unknown protein [Arabidopsis thaliana] gi|332196512|gb|AEE34633.1| zinc finger (MYND type) family protein / F-box family protein [Arabidopsis thaliana]

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 211/328 (64%), Positives = 253/328 (77%), Gaps = 10/328 (3%)

Query: 18  DLFDALPDDLLECVLSKLISSAPSPSDFINVLLTCKRLNRVGLRPTVLSQAGPKALAVKA 77
           DL D++PDDL+  +L KL S++  P+DFINVLLTCKRL  + + P VLS+  PKA+AVKA
Sbjct: 42  DLLDSIPDDLVISILCKLGSTSRCPADFINVLLTCKRLKGLAMNPIVLSRLSPKAIAVKA 101

Query: 78  KNWSDSAHRFLKRCVFAGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKSHAPALYSLA 137
            NWS+ +HRFLKRCV AG+LEACYTLGMIRFYCLQNR +G SLMAKAA+ SHAPALYSLA
Sbjct: 102 HNWSEYSHRFLKRCVDAGSLEACYTLGMIRFYCLQNRGNGASLMAKAAISSHAPALYSLA 161

Query: 138 VIQFNGSGGGKNEKDLRAGVALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLI 197
           VIQFNGSGG KN+KDLRAGVALCARAA +GHVDA+RELGHCLQDGYGV QN+ +GRR L+
Sbjct: 162 VIQFNGSGGSKNDKDLRAGVALCARAAFLGHVDALRELGHCLQDGYGVPQNVSEGRRFLV 221

Query: 198 EANAREFFQSVSKTRTRHQSYYFQLARATDAQIP-----CSPLLSDFGYNVEAPEVHPVN 252
           +ANARE   +V  +  + +S +  L++     +P       PLLSDFG NV APE HP N
Sbjct: 222 QANARE-LAAVLSSGIQARSTWLSLSQPPPPVVPNHGQQTCPLLSDFGCNVPAPETHPAN 280

Query: 253 NFLKEWFESGVSDL-GNGLRLCSYSGCGRPETRVHEYRRCSVCGKVNYCSRACQAIDWKT 311
            FL +WF     D  G+GLRLCS++GCGRPETR HE+RRCSVCG VNYCSRACQA+DWK 
Sbjct: 281 RFLADWFAVRGGDCPGDGLRLCSHAGCGRPETRKHEFRRCSVCGVVNYCSRACQALDWKL 340

Query: 312 RHKRECVPPLAPLINDGDADGLEGMVEI 339
           RHK +C  P+   + +G  DG EG V+I
Sbjct: 341 RHKMDCA-PVQRWLEEG--DGGEGNVQI 365

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357465071|ref|XP_003602817.1| F-box family protein [Medicago truncatula] gi|355491865|gb|AES73068.1| F-box family protein [Medicago truncatula]

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 204/322 (63%), Positives = 248/322 (77%), Gaps = 11/322 (3%)

Query: 4   RKKLRTCRKLVEKPDLFDALPDDLLECVLSKLISSAPSPSDFINVLLTCKRLNRVGLRPT 63
           R+ ++   K     D F+  PDD++  +L+KL S+A SPS F N LLTCKRLNR+G  P 
Sbjct: 2   RRPMKHPHKKNHNQDFFEDFPDDIVVFILTKLSSTASSPSHFFNTLLTCKRLNRLGFHPM 61

Query: 64  VLSQAGPKALAVKAKNWSDSAHRFLKRCVFAGNLEACYTLGMIRFYCLQNRSSGTSLMAK 123
           VLS+AGPK LAVK KNWS+++H FLKRCV  GN++ACYTLGMIRFYCL+NR SG SL+AK
Sbjct: 62  VLSKAGPKVLAVKPKNWSENSHHFLKRCVNVGNVDACYTLGMIRFYCLRNRRSGVSLIAK 121

Query: 124 AAMKSHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASIGHVDAVRELGHCLQDGY 183
           AAMK HAPALYSLAVIQFNGSGG K +KDLRAGVAL ARA+ +GH+DA+RELGHCLQDGY
Sbjct: 122 AAMKLHAPALYSLAVIQFNGSGGTKQDKDLRAGVALSARASLLGHIDALRELGHCLQDGY 181

Query: 184 GVRQNIEKGRRLLIEANARE------FFQSVSKTRTRHQSYYFQLARATDAQIPCSPLLS 237
           GV+QN+ +GRRLL++AN RE      F +  S +R    S    L+R ++  +   PL+ 
Sbjct: 182 GVKQNVTEGRRLLVQANVREILLVYRFLELASPSRA--GSCEGILSRLSNMAV---PLIK 236

Query: 238 DFGYNVEAPEVHPVNNFLKEWFESGVSDLGNGLRLCSYSGCGRPETRVHEYRRCSVCGKV 297
           +  YNV+ PEVHPVN FL+EWFESG+  L +GLRLC++ GCGR ETR HE+RRCSVCGKV
Sbjct: 237 ENRYNVKVPEVHPVNWFLREWFESGLGILEDGLRLCAHIGCGRAETRPHEFRRCSVCGKV 296

Query: 298 NYCSRACQAIDWKTRHKRECVP 319
           NYCSRACQA+DWK RHK EC P
Sbjct: 297 NYCSRACQALDWKLRHKMECSP 318

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	348
TAIR|locus:2019604	379	AT1G67340 "AT1G67340" [Arabido	0.873	0.802	0.648	4e-106
TAIR|locus:2177522	336	AT5G50450 [Arabidopsis thalian	0.844	0.875	0.625	2.2e-98
UNIPROTKB|Q74B01	213	GSU2395 "Uncharacterized prote	0.321	0.525	0.327	1.8e-06
TIGR_CMR|GSU_2395	213	GSU_2395 "conserved hypothetic	0.321	0.525	0.327	1.8e-06
UNIPROTKB|G4NGF6	1240	MGG_04327 "Uncharacterized pro	0.114	0.032	0.6	3.8e-06
UNIPROTKB|F5GYS7	188	PDCD2 "Programmed cell death p	0.215	0.398	0.367	5.1e-06
UNIPROTKB|J3QK82	221	PDCD2 "Programmed cell death 2	0.215	0.339	0.367	1.4e-05
UNIPROTKB|E9PCU7	228	PDCD2 "Programmed cell death p	0.215	0.328	0.367	1.6e-05
UNIPROTKB|I3L6K4	250	PDCD2 "Uncharacterized protein	0.215	0.3	0.367	1.7e-05
UNIPROTKB|Q2YDC9	344	PDCD2 "Programmed cell death p	0.206	0.209	0.369	2.8e-05

TAIR|locus:2019604 AT1G67340 "AT1G67340" [Arabidopsis thaliana (taxid:3702)]

 Score = 1050 (374.7 bits), Expect = 4.0e-106, P = 4.0e-106
 Identities = 205/316 (64%), Positives = 244/316 (77%)

Query:    31 VLSKLISSAPSPSDFINVLLTCKRLNRVGLRPTVLSQAGPKALAVKAKNWSDSAHRFLKR 90
             +L KL S++  P+DFINVLLTCKRL  + + P VLS+  PKA+AVKA NWS+ +HRFLKR
Sbjct:    55 ILCKLGSTSRCPADFINVLLTCKRLKGLAMNPIVLSRLSPKAIAVKAHNWSEYSHRFLKR 114

Query:    91 CVFAGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGGKNE 150
             CV AG+LEACYTLGMIRFYCLQNR +G SLMAKAA+ SHAPALYSLAVIQFNGSGG KN+
Sbjct:   115 CVDAGSLEACYTLGMIRFYCLQNRGNGASLMAKAAISSHAPALYSLAVIQFNGSGGSKND 174

Query:   151 KDLRAGVALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFFQSVSK 210
             KDLRAGVALCARAA +GHVDA+RELGHCLQDGYGV QN+ +GRR L++ANARE   +V  
Sbjct:   175 KDLRAGVALCARAAFLGHVDALRELGHCLQDGYGVPQNVSEGRRFLVQANAREL-AAVLS 233

Query:   211 TRTRHQSYYFQLARATDAQIP------CSPLLSDFGYNVEAPEVHPVNNFLKEWFESGVS 264
             +  + +S +  L++     +P      C PLLSDFG NV APE HP N FL +WF     
Sbjct:   234 SGIQARSTWLSLSQPPPPVVPNHGQQTC-PLLSDFGCNVPAPETHPANRFLADWFAVRGG 292

Query:   265 DL-GNGLRLCSYSGCGRPETRVHEYRRCSVCGKVNYCSRACQAIDWKTRHKRECVPPLAP 323
             D  G+GLRLCS++GCGRPETR HE+RRCSVCG VNYCSRACQA+DWK RHK +C P +  
Sbjct:   293 DCPGDGLRLCSHAGCGRPETRKHEFRRCSVCGVVNYCSRACQALDWKLRHKMDCAP-VQR 351

Query:   324 LINDGDADGLEGMVEI 339
              + +GD  G EG V+I
Sbjct:   352 WLEEGD--GGEGNVQI 365

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

TAIR|locus:2177522 AT5G50450 [Arabidopsis thaliana (taxid:3702)]

 Score = 977 (349.0 bits), Expect = 2.2e-98, P = 2.2e-98
 Identities = 195/312 (62%), Positives = 231/312 (74%)

Query:    31 VLSKLISSAPSPSDFINVLLTCKRLNRVGLRPTVLSQAGPKALAVKAKNWSDSAHRFLKR 90
             +L KL +SA SPSDF+ VL TCKRLNR+GL P VLS+AG + LAV A+ WSDS+H+FLK 
Sbjct:    33 ILRKLATSASSPSDFLTVLSTCKRLNRLGLHPLVLSKAGTQTLAVTAEKWSDSSHKFLKL 92

Query:    91 CVFAGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGGKNE 150
             CV AGN++A Y+LGMIRFYCLQN  SG SLMAKAA+KSHAPALYSL+VIQFNGSGG K +
Sbjct:    93 CVNAGNIDASYSLGMIRFYCLQNPVSGASLMAKAAIKSHAPALYSLSVIQFNGSGGSKTD 152

Query:   151 KDLRAGVALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFFQSVSK 210
             K+LRAGVALCAR+A +GHVDA+RELGHCLQDGYGV +++ +GRRLLI+ANARE   S+  
Sbjct:   153 KNLRAGVALCARSAYLGHVDALRELGHCLQDGYGVPRDVSEGRRLLIQANARELACSLRS 212

Query:   211 TRTRHQSYYFQLARATDAQIPCSPLLSDFGYNVEAPEVHPVNNFLKEWFESGVSDLGNGL 270
                     Y  L    + +      L+D    V   E+HPVN FLKEWF SG  DL  GL
Sbjct:   213 --------YLSLKSGDENET-----LTDLSV-VPVQEIHPVNRFLKEWFSSGRVDLAEGL 258

Query:   271 RLCSYSGCGRPETRVHEYRRCSVCGKVNYCSRACQAIDWKTRHKRECVPP---LAPLIND 327
             R+CS+ GCGRPETR HE+RRCSVCGKVNYCSR CQA+DW+ +HK EC P    +A     
Sbjct:   259 RMCSHGGCGRPETRAHEFRRCSVCGKVNYCSRGCQALDWRAKHKVECTPLDLWVAAAAEI 318

Query:   328 GDADGLEGMVEI 339
             GD DG    VEI
Sbjct:   319 GD-DGEAVAVEI 329

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q74B01 GSU2395 "Uncharacterized protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 118 (46.6 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
 Identities = 39/119 (32%), Positives = 60/119 (50%)

Query:    76 KAKNWSDSAHRFLKRCVFAGNLEACYTLGMI--RFYCL-QNRSSGTSLMAKAAMKSHAPA 132
             K KN+ D+A   L+  V  GNL+A   LG +  + Y + QN +    L   AA K HA A
Sbjct:    35 KNKNY-DNALPLLENLVTEGNLDAYNLLGTMYKKGYSVPQNPNKAIELYEFAAKKGHAGA 93

Query:   133 LYSLAVIQFNGSGGGKNEKDLRAGVALCARAASIGHVDAVRELGHCLQDGYGVRQNIEK 191
              Y+L ++  +GSG     +D    +     AA      A+  LGH   +G GV++N+++
Sbjct:    94 QYNLGLMYESGSG---ILQDYSQAIKWYKLAAIQNDSGALNNLGHIYHNGLGVKKNMKE 149

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_2395 GSU_2395 "conserved hypothetical protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 118 (46.6 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
 Identities = 39/119 (32%), Positives = 60/119 (50%)

Query:    76 KAKNWSDSAHRFLKRCVFAGNLEACYTLGMI--RFYCL-QNRSSGTSLMAKAAMKSHAPA 132
             K KN+ D+A   L+  V  GNL+A   LG +  + Y + QN +    L   AA K HA A
Sbjct:    35 KNKNY-DNALPLLENLVTEGNLDAYNLLGTMYKKGYSVPQNPNKAIELYEFAAKKGHAGA 93

Query:   133 LYSLAVIQFNGSGGGKNEKDLRAGVALCARAASIGHVDAVRELGHCLQDGYGVRQNIEK 191
              Y+L ++  +GSG     +D    +     AA      A+  LGH   +G GV++N+++
Sbjct:    94 QYNLGLMYESGSG---ILQDYSQAIKWYKLAAIQNDSGALNNLGHIYHNGLGVKKNMKE 149

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|G4NGF6 MGG_04327 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 141 (54.7 bits), Expect = 3.8e-06, P = 3.8e-06
 Identities = 24/40 (60%), Positives = 26/40 (65%)

Query:   278 CGRPETRVHEYRRCSVCGKVNYCSRACQAIDWKTRHKREC 317
             CGRPE    +  RC  C +V YCS  CQ  DWKTRHKREC
Sbjct:  1196 CGRPEGPQQKLNRCKACLEVKYCSVDCQRADWKTRHKREC 1235

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F5GYS7 PDCD2 "Programmed cell death protein 2" [Homo sapiens (taxid:9606)]

 Score = 124 (48.7 bits), Expect = 5.1e-06, P = 5.1e-06
 Identities = 32/87 (36%), Positives = 41/87 (47%)

Query:   234 PLLSDFGYNVEAPEVHPVNNFLKEWFESGVSDLGNGLRLCSYSGCGRPETRVHEYRRCSV 293
             P  +DF Y+ E P  +P      E  ES    L +G  LC   GC  P+T       CS 
Sbjct:    68 PRKNDF-YSYEPPSENPP----PETGESVCLQLKSGAHLCRVCGCLGPKT-------CSR 115

Query:   294 CGKVNYCSRACQAIDWKTRHKRECVPP 320
             C K  YCS+  Q +DW+  HK+ C  P
Sbjct:   116 CHKAYYCSKEHQTLDWRLGHKQACAQP 142

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|J3QK82 PDCD2 "Programmed cell death 2, isoform CRA_a" [Homo sapiens (taxid:9606)]

 Score = 124 (48.7 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 32/87 (36%), Positives = 41/87 (47%)

Query:   234 PLLSDFGYNVEAPEVHPVNNFLKEWFESGVSDLGNGLRLCSYSGCGRPETRVHEYRRCSV 293
             P  +DF Y+ E P  +P      E  ES    L +G  LC   GC  P+T       CS 
Sbjct:   101 PRKNDF-YSYEPPSENPP----PETGESVCLQLKSGAHLCRVCGCLGPKT-------CSR 148

Query:   294 CGKVNYCSRACQAIDWKTRHKRECVPP 320
             C K  YCS+  Q +DW+  HK+ C  P
Sbjct:   149 CHKAYYCSKEHQTLDWRLGHKQACAQP 175

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E9PCU7 PDCD2 "Programmed cell death protein 2" [Homo sapiens (taxid:9606)]

 Score = 124 (48.7 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 32/87 (36%), Positives = 41/87 (47%)

Query:   234 PLLSDFGYNVEAPEVHPVNNFLKEWFESGVSDLGNGLRLCSYSGCGRPETRVHEYRRCSV 293
             P  +DF Y+ E P  +P      E  ES    L +G  LC   GC  P+T       CS 
Sbjct:   101 PRKNDF-YSYEPPSENPP----PETGESVCLQLKSGAHLCRVCGCLGPKT-------CSR 148

Query:   294 CGKVNYCSRACQAIDWKTRHKRECVPP 320
             C K  YCS+  Q +DW+  HK+ C  P
Sbjct:   149 CHKAYYCSKEHQTLDWRLGHKQACAQP 175

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|I3L6K4 PDCD2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 125 (49.1 bits), Expect = 1.7e-05, P = 1.7e-05
 Identities = 32/87 (36%), Positives = 43/87 (49%)

Query:   234 PLLSDFGYNVEAPEVHPVNNFLKEWFESGVSDLGNGLRLCSYSGCGRPETRVHEYRRCSV 293
             P  +DF Y+ E P   P      E  ES    L +G  LC   GC  P+T       CS 
Sbjct:     7 PRRNDF-YSFEPPSEDPP----PETGESLSLQLKSGAHLCRVCGCLGPKT-------CSR 54

Query:   294 CGKVNYCSRACQAIDWKTRHKRECVPP 320
             C + +YCS+  QA+DW++ HK+ C  P
Sbjct:    55 CHQAHYCSKEHQALDWRSGHKQACAQP 81

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q2YDC9 PDCD2 "Programmed cell death protein 2" [Bos taurus (taxid:9913)]

 Score = 126 (49.4 bits), Expect = 2.8e-05, P = 2.8e-05
 Identities = 31/84 (36%), Positives = 42/84 (50%)

Query:   234 PLLSDFGYNVEAPEVHPVNNFLKEWFESGVSDLGNGLRLCSYSGCGRPETRVHEYRRCSV 293
             P  +DF Y+ E P   P +    E  ES    L +G  LC   GC  P       +RCS 
Sbjct:   101 PRQNDF-YSYEPPSEDPPS----ETGESVYLHLKSGAHLCRVCGCSGP-------KRCSR 148

Query:   294 CGKVNYCSRACQAIDWKTRHKREC 317
             C K +YCS+  Q++DW+  HK+ C
Sbjct:   149 CHKAHYCSKEHQSLDWRLGHKQAC 172

GO:0005634 "nucleus" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FYF9	FB76_ARATH	No assigned EC number	0.6432	0.9137	0.8390	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	348
COG0790	292	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily	9e-11
pfam01753	39	pfam01753, zf-MYND, MYND finger	1e-08
COG0790	292	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily	2e-05
pfam12937	47	pfam12937, F-box-like, F-box-like	6e-04
COG0790	292	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily	0.001

>gnl|CDD|223861 COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]

 Score = 61.6 bits (149), Expect = 9e-11
 Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 6/115 (5%)

Query: 94  AGNLEACYTLGMIRFY---CLQNRSSGTSLMAKAAMKSHAPA---LYSLAVIQFNGSGGG 147
            G  EA + LG++         +         KAA   +  A   +Y L +   +G    
Sbjct: 106 DGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQAL 165

Query: 148 KNEKDLRAGVALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR 202
               D +  + L  +AA +G+ DA   LG   + G GV ++++K  R   +A  +
Sbjct: 166 AVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ 220

Length = 292

>gnl|CDD|201954 pfam01753, zf-MYND, MYND finger

 Score = 50.1 bits (120), Expect = 1e-08
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 4/40 (10%)

Query: 278 CGRPETRVHEYRRCSVCGKVNYCSRACQAIDWKTRHKREC 317
           CG+   ++    RCS C  V YCS+ CQ  DW   HK+EC
Sbjct: 4   CGKEALKL---LRCSRCKSVYYCSKECQKADWP-YHKKEC 39

Length = 39

>gnl|CDD|223861 COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]

 Score = 45.0 bits (106), Expect = 2e-05
 Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 3/94 (3%)

Query: 106 IRFYCLQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAAS 165
                  + +       KAA    A AL  L  +   G G     +D          AA+
Sbjct: 49  AGSAYPPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGV---SRDKTKAADWYRCAAA 105

Query: 166 IGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEA 199
            G  +A+  LG    +G GV  ++ K  +   +A
Sbjct: 106 DGLAEALFNLGLMYANGRGVPLDLVKALKYYEKA 139

Length = 292

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 36.7 bits (86), Expect = 6e-04
 Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 5/45 (11%)

Query: 20 FDALPDDLLECVLSKLISSAPSPSDFINVLLTCKRLNRVGLRPTV 64
             LPD++L  + S L      P D + + L C+R   +    ++
Sbjct: 1  LSDLPDEILLQIFSYL-----DPRDLLRLALVCRRWRELASDDSL 40

This is an F-box-like family. Length = 47

>gnl|CDD|223861 COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]

 Score = 40.0 bits (93), Expect = 0.001
 Identities = 32/166 (19%), Positives = 53/166 (31%), Gaps = 24/166 (14%)

Query: 82  DSAHRFLKRCVFAGNLEA---CYTLGMIRFY------CLQNRSSGTSLMAKAAMKSHAPA 132
             A ++ ++    GN+EA    Y LG+             +      L  KAA   +  A
Sbjct: 130 VKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDA 189

Query: 133 LYSLAVIQFNGSGGGKNEKDLRAGVALCARAASIGHVDAVRELGHCLQDGYGVR------ 186
              L  +   G G     +DL+       +AA  G   A   LG    +G GV+      
Sbjct: 190 QLLLGRMYEKGLGV---PRDLKKAFRWYKKAAEQGDGAACYNLGLMYLNGEGVKKAAFLT 246

Query: 187 ----QNIEKGRRLLIEANAREFFQS--VSKTRTRHQSYYFQLARAT 226
               ++ ++    L +A    F  +    +      S      R  
Sbjct: 247 AAKEEDKKQALEWLQKACELGFDNACEALRALKIGLSARGSGRRLA 292

Length = 292

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	348
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	99.88
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	99.8
KOG1550	552	consensus Extracellular protein SEL-1 and related	99.77
KOG1550	552	consensus Extracellular protein SEL-1 and related	99.73
KOG4014	248	consensus Uncharacterized conserved protein (conta	99.43
KOG4014	248	consensus Uncharacterized conserved protein (conta	99.26
PF01753	37	zf-MYND: MYND finger; InterPro: IPR002893 Zinc fin	98.89
smart00671	36	SEL1 Sel1-like repeats. These represent a subfamil	98.62
PF08238	39	Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like r	98.57
PF08238	39	Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like r	98.52
smart00671	36	SEL1 Sel1-like repeats. These represent a subfamil	98.52
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	98.22
PRK10370	198	formate-dependent nitrite reductase complex subuni	97.88
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.71
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	97.61
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	97.59
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	97.58
PRK15359	144	type III secretion system chaperone protein SscB;	97.58
PRK11788	389	tetratricopeptide repeat protein; Provisional	97.52
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	97.5
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	97.47
PRK12370	553	invasion protein regulator; Provisional	97.37
PRK12370	553	invasion protein regulator; Provisional	97.36
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	97.35
KOG2003	840	consensus TPR repeat-containing protein [General f	97.34
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	97.34
PRK15359	144	type III secretion system chaperone protein SscB;	97.32
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	97.27
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	97.22
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.18
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.18
PRK11189	296	lipoprotein NlpI; Provisional	97.1
PRK11189	296	lipoprotein NlpI; Provisional	97.08
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	96.92
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.92
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	96.88
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	96.87
PRK11788	389	tetratricopeptide repeat protein; Provisional	96.79
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	96.76
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	96.74
KOG1126	638	consensus DNA-binding cell division cycle control	96.61
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	96.55
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	96.5
TIGR02552	135	LcrH_SycD type III secretion low calcium response	96.45
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	96.45
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	96.45
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	96.4
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	96.35
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	96.33
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	96.3
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	96.26
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.18
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	96.16
KOG2003	840	consensus TPR repeat-containing protein [General f	96.12
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	96.07
KOG3612	588	consensus PHD Zn-finger protein [General function	96.03
PF12688	120	TPR_5: Tetratrico peptide repeat	95.98
PRK10803	263	tol-pal system protein YbgF; Provisional	95.94
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	95.83
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	95.77
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	95.73
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	95.71
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	95.68
PRK10370	198	formate-dependent nitrite reductase complex subuni	95.68
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	95.65
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	95.64
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	95.61
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	95.56
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	95.54
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	95.49
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	95.44
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	95.43
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	95.42
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	95.36
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	95.33
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	95.27
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	95.22
KOG1125	579	consensus TPR repeat-containing protein [General f	95.17
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	95.12
PRK11906	458	transcriptional regulator; Provisional	95.06
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	95.01
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	94.95
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	94.91
KOG1129	478	consensus TPR repeat-containing protein [General f	94.69
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	94.52
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	94.47
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	94.46
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	94.39
PRK11906	458	transcriptional regulator; Provisional	94.28
KOG1126	638	consensus DNA-binding cell division cycle control	94.23
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	94.15
KOG2061	362	consensus Uncharacterized MYND Zn-finger protein [	94.11
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	94.04
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	93.86
PRK10803	263	tol-pal system protein YbgF; Provisional	93.59
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	93.55
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	93.52
PRK14574	822	hmsH outer membrane protein; Provisional	93.51
PRK15331	165	chaperone protein SicA; Provisional	93.44
PRK14574	822	hmsH outer membrane protein; Provisional	92.96
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	92.7
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	92.56
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	92.08
PRK14720	906	transcript cleavage factor/unknown domain fusion p	92.04
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	91.91
KOG2997	366	consensus F-box protein FBX9 [General function pre	91.67
PF13428	44	TPR_14: Tetratricopeptide repeat	91.54
KOG1586	288	consensus Protein required for fusion of vesicles	91.29
PLN03158	396	methionine aminopeptidase; Provisional	91.24
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	91.18
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	90.83
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	90.67
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	90.28
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	90.24
PF12688	120	TPR_5: Tetratrico peptide repeat	89.7
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	89.67
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	89.61
PF13428	44	TPR_14: Tetratricopeptide repeat	89.5
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	88.77
PLN03218	1060	maturation of RBCL 1; Provisional	88.51
KOG2076	895	consensus RNA polymerase III transcription factor	88.18
KOG0547	606	consensus Translocase of outer mitochondrial membr	87.97
KOG0547	606	consensus Translocase of outer mitochondrial membr	87.96
PF13824	55	zf-Mss51: Zinc-finger of mitochondrial splicing su	87.79
PF13371	73	TPR_9: Tetratricopeptide repeat	87.65
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	87.55
PRK15331	165	chaperone protein SicA; Provisional	87.49
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	87.29
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	87.28
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	86.96
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	86.76
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	86.73
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	86.44
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	86.35
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	86.03
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	85.88
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	85.84
KOG4555	175	consensus TPR repeat-containing protein [Function	85.62
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	85.4
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	85.16
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	84.78
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	83.91
PF13431	34	TPR_17: Tetratricopeptide repeat	83.07
KOG1129	478	consensus TPR repeat-containing protein [General f	81.92
KOG3060	289	consensus Uncharacterized conserved protein [Funct	81.61
PLN03218	1060	maturation of RBCL 1; Provisional	81.5
KOG4555	175	consensus TPR repeat-containing protein [Function	80.74
PLN02789	320	farnesyltranstransferase	80.47
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	80.12
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	80.07

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=99.88  E-value=3.2e-21  Score=181.38  Aligned_cols=128  Identities=22%  Similarity=0.248  Sum_probs=122.8

Q ss_pred             cHHHHHHHHHHHHHCCCHHHHHHhhhhhh---hccCCHHHHHHHHHHHHhCCCHHH---HHHHHHHHHcc---CCCCCCc
Q 018965           80 WSDSAHRFLKRCVFAGNLEACYTLGMIRF---YCLQNRSSGTSLMAKAAMKSHAPA---LYSLAVIQFNG---SGGGKNE  150 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~G~~~A~~~Lg~~y~---~~~~d~~~A~~~~~~AA~~G~~~A---~~~Lg~~y~~G---~g~~~~~  150 (348)
                      +..+|+.||+++++.|++.+++.||.+|.   |+++|..+|+.||++||++|++.|   ++.||.+|..|   .+   ++
T Consensus        92 ~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~---~~  168 (292)
T COG0790          92 DKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALA---VA  168 (292)
T ss_pred             cHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhc---cc
Confidence            37899999999999999999999999998   689999999999999999999999   99999999999   77   99


Q ss_pred             cCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHh
Q 018965          151 KDLRAGVALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFFQSVSK  210 (348)
Q Consensus       151 ~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~~A~~~  210 (348)
                      .|..+|+.||.+|+++|++.|++.||.+|..|.||++|.++|++||.+|+++|+..++..
T Consensus       169 ~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~~~a~~~  228 (292)
T COG0790         169 YDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGDGAACYN  228 (292)
T ss_pred             HHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999777764

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=99.80  E-value=1.1e-18  Score=164.06  Aligned_cols=127  Identities=22%  Similarity=0.219  Sum_probs=124.4

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHhhhhhh---hccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHccCCCCCCccCHHHHH
Q 018965           81 SDSAHRFLKRCVFAGNLEACYTLGMIRF---YCLQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGGKNEKDLRAGV  157 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G~~~A~~~Lg~~y~---~~~~d~~~A~~~~~~AA~~G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~  157 (348)
                      ..++..++.+++..|++.+++.|+.+|.   ++++|..+|++||+++++.|++.++++||.||..|.|   |++|+.+|+
T Consensus        57 ~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~g---v~~d~~~A~  133 (292)
T COG0790          57 YAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRG---VPLDLVKAL  133 (292)
T ss_pred             HHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCC---cccCHHHHH
Confidence            7899999999999999999999999998   8999999999999999999999999999999999999   999999999


Q ss_pred             HHHHHHHhCCCHHH---HHHHHHHHhcc---CCCCCCHHHHHHHHHHHHhcCCHHHHHh
Q 018965          158 ALCARAASIGHVDA---VRELGHCLQDG---YGVRQNIEKGRRLLIEANAREFFQSVSK  210 (348)
Q Consensus       158 ~~~~kAA~~G~~~A---~~~Lg~~y~~G---~Gv~~d~~~A~~w~~~Aa~~G~~~A~~~  210 (348)
                      .||++||++|++.|   ++.||.+|..|   .|+..|..+|+.||++|+++|++.||..
T Consensus       134 ~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~  192 (292)
T COG0790         134 KYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLL  192 (292)
T ss_pred             HHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHH
Confidence            99999999999999   99999999999   8999999999999999999999999987

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.77  E-value=3e-18  Score=174.84  Aligned_cols=127  Identities=27%  Similarity=0.295  Sum_probs=119.8

Q ss_pred             cHHHHHHHHHHHHH-------CCCHHHHHHhhhhhh---hccC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHccCCCCC
Q 018965           80 WSDSAHRFLKRCVF-------AGNLEACYTLGMIRF---YCLQ-NRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGGK  148 (348)
Q Consensus        80 ~~~~A~~~~~kaA~-------~G~~~A~~~Lg~~y~---~~~~-d~~~A~~~~~~AA~~G~~~A~~~Lg~~y~~G~g~~~  148 (348)
                      +.++|+.||+.+|+       +|++.|++.||.+|.   ++.. |..+|+.+|.+||+.|++.|+|.||.+|..|.    
T Consensus       264 d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~----  339 (552)
T KOG1550|consen  264 DLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGT----  339 (552)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCC----
Confidence            48999999999999       999999999999998   4677 99999999999999999999999999999986    


Q ss_pred             CccCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHh
Q 018965          149 NEKDLRAGVALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFFQSVSK  210 (348)
Q Consensus       149 ~~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~~A~~~  210 (348)
                      .++|..+|++||..||..|+..|+++|+.||+.|.||++|.++|+.||++||+.|++.|+..
T Consensus       340 ~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~~A~~~  401 (552)
T KOG1550|consen  340 KERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNPSAAYL  401 (552)
T ss_pred             ccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccChhhHHH
Confidence            36899999999999999999999999999999999999999999999999999999988875

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.73  E-value=2e-17  Score=168.79  Aligned_cols=126  Identities=25%  Similarity=0.334  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHhhhhhh----hccCCHHHHHHHHHHHHh-------CCCHHHHHHHHHHHHccCCCCCC
Q 018965           81 SDSAHRFLKRCVFAGNLEACYTLGMIRF----YCLQNRSSGTSLMAKAAM-------KSHAPALYSLAVIQFNGSGGGKN  149 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G~~~A~~~Lg~~y~----~~~~d~~~A~~~~~~AA~-------~G~~~A~~~Lg~~y~~G~g~~~~  149 (348)
                      ...+++||+.+|+.|+..|++.+|.+|+    |+.+|.++|++||+.||+       +|++.|++.||.+|..|.+   +
T Consensus       228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~---~  304 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLG---V  304 (552)
T ss_pred             hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCC---C
Confidence            4689999999999999999999999998    599999999999999999       9999999999999999999   8


Q ss_pred             cc-CHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHh
Q 018965          150 EK-DLRAGVALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFFQSVSK  210 (348)
Q Consensus       150 ~~-d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~~A~~~  210 (348)
                      ++ |..+|+.+|.+||+.|+++|+|.||.+|..|. .++|..+|.+||..||..|+..|+.+
T Consensus       305 ~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~-~~~d~~~A~~yy~~Aa~~G~~~A~~~  365 (552)
T KOG1550|consen  305 EKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGT-KERDYRRAFEYYSLAAKAGHILAIYR  365 (552)
T ss_pred             ccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCC-ccccHHHHHHHHHHHHHcCChHHHHH
Confidence            88 99999999999999999999999999999999 67999999999999999999999997

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=99.43  E-value=3.1e-12  Score=109.75  Aligned_cols=121  Identities=18%  Similarity=0.263  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHhhhhhh------hccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHccC-------CCC
Q 018965           81 SDSAHRFLKRCVFAGNLEACYTLGMIRF------YCLQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGS-------GGG  147 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G~~~A~~~Lg~~y~------~~~~d~~~A~~~~~~AA~~G~~~A~~~Lg~~y~~G~-------g~~  147 (348)
                      ..+|.+.|+.|.+.+++.|+.++|++..      -...|..+|.+|+.+|.+.++..|.|.|..||..|.       .+.
T Consensus        89 l~~a~r~~~~aC~~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~~~aCf~LS~m~~~g~~k~~t~ap~~  168 (248)
T KOG4014|consen   89 LSKAIRPMKIACDANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLEDGEACFLLSTMYMGGKEKFKTNAPGE  168 (248)
T ss_pred             HHHHHHHHHHHhccCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCCCchHHHHHHHHHhccchhhcccCCCC
Confidence            7899999999999999999999999987      244578999999999999999999999999999881       111


Q ss_pred             CCc----------cCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965          148 KNE----------KDLRAGVALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANA  201 (348)
Q Consensus       148 ~~~----------~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~  201 (348)
                      ..|          +|..+|+.+--+|.+.+++.|.-++..||..|.||++|..+|..|=.+|-+
T Consensus       169 g~p~~~~~~~~~~kDMdka~qfa~kACel~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e  232 (248)
T KOG4014|consen  169 GKPLDRAELGSLSKDMDKALQFAIKACELDIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKE  232 (248)
T ss_pred             CCCcchhhhhhhhHhHHHHHHHHHHHHhcCChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHH
Confidence            144          899999999999999999999999999999999999999999999888864

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=99.26  E-value=8.3e-11  Score=101.06  Aligned_cols=130  Identities=19%  Similarity=0.216  Sum_probs=117.0

Q ss_pred             HHHHHHHHHHHH-HCCCHHHHHHhhhhhh----hccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHccCCCCCCccCHHH
Q 018965           81 SDSAHRFLKRCV-FAGNLEACYTLGMIRF----YCLQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGGKNEKDLRA  155 (348)
Q Consensus        81 ~~~A~~~~~kaA-~~G~~~A~~~Lg~~y~----~~~~d~~~A~~~~~~AA~~G~~~A~~~Lg~~y~~G~g~~~~~~d~~~  155 (348)
                      .++|.+.|++-. +.+++.++|.+|+.++    |...|+.+|++.|++|.+..+++|...+|++..+|.-......|..+
T Consensus        51 F~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n~~~aC~~~gLl~~~g~~~r~~dpd~~K  130 (248)
T KOG4014|consen   51 FQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDANIPQACRYLGLLHWNGEKDRKADPDSEK  130 (248)
T ss_pred             HHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccCCHHHHhhhhhhhccCcCCccCCCCcHH
Confidence            578888888754 5789999999999988    67889999999999999999999999999999999755446778999


Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHhcc----------CCCC----------CCHHHHHHHHHHHHhcCCHHHHHh
Q 018965          156 GVALCARAASIGHVDAVRELGHCLQDG----------YGVR----------QNIEKGRRLLIEANAREFFQSVSK  210 (348)
Q Consensus       156 A~~~~~kAA~~G~~~A~~~Lg~~y~~G----------~Gv~----------~d~~~A~~w~~~Aa~~G~~~A~~~  210 (348)
                      |.+++++|.+.++..|.++|..||..|          .|.|          +|..+|+.+--+|.+.+++.|-.+
T Consensus       131 a~~y~traCdl~~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~~~~aCAN  205 (248)
T KOG4014|consen  131 AERYMTRACDLEDGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELDIPQACAN  205 (248)
T ss_pred             HHHHHHHhccCCCchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcCChHHHhh
Confidence            999999999999999999999999887          2556          999999999999999999999876

>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.89  E-value=6.4e-10  Score=71.69  Aligned_cols=34  Identities=56%  Similarity=1.294  Sum_probs=29.1

Q ss_pred             CCCCCccccccccCCCCCceeecChHHHHHhchhhchhcC
Q 018965          278 CGRPETRVHEYRRCSVCGKVNYCSRACQAIDWKTRHKREC  317 (348)
Q Consensus       278 C~~~~~~~~~l~~C~~C~~~~YCs~~CQ~~~W~~~Hk~~C  317 (348)
                      |++..     +.+|++|+.++|||++||+.||+. ||.+|
T Consensus         4 C~~~~-----~~~C~~C~~~~YCs~~Cq~~~w~~-Hk~~C   37 (37)
T PF01753_consen    4 CGKPA-----LKRCSRCKSVYYCSEECQRADWPY-HKFEC   37 (37)
T ss_dssp             TSSCS-----SEEETTTSSSEESSHHHHHHHHHH-HCCTH
T ss_pred             CCCCc-----CCcCCCCCCEEecCHHHHHHHHHH-HhhhC
Confidence            66633     359999999999999999999975 99876

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MYND-type zinc finger domains. The MYND domain (myeloid, Nervy, and DEAF-1) is present in a large group of proteins that includes RP-8 (PDCD2), Nervy, and predicted proteins from Drosophila, mammals, Caenorhabditis elegans, yeast, and plants [, , ]. The MYND domain consists of a cluster of cysteine and histidine residues, arranged with an invariant spacing to form a potential zinc-binding motif []. Mutating conserved cysteine residues in the DEAF-1 MYND domain does not abolish DNA binding, which suggests that the MYND domain might be involved in protein-protein interactions []. Indeed, the MYND domain of ETO/MTG8 interacts directly with the N-CoR and SMRT co-repressors [, ]. Aberrant recruitment of co-repressor complexes and inappropriate transcriptional repression is believed to be a general mechanism of leukemogenesis caused by the t(8;21) translocations that fuse ETO with the acute myelogenous leukemia 1 (AML1) protein. ETO has been shown to be a co-repressor recruited by the promyelocytic leukemia zinc finger (PLZF) protein []. A divergent MYND domain present in the adenovirus E1A binding protein BS69 was also shown to interact with N-CoR and mediate transcriptional repression []. The current evidence suggests that the MYND motif in mammalian proteins constitutes a protein-protein interaction domain that functions as a co-repressor-recruiting interface. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3QWW_A 3QWV_A 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3RU0_A ....

>smart00671 SEL1 Sel1-like repeats

Probab=98.62  E-value=6e-08  Score=61.52  Aligned_cols=35  Identities=26%  Similarity=0.372  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCC
Q 018965          170 DAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREF  204 (348)
Q Consensus       170 ~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~  204 (348)
                      .|++.||.+|..|.|+++|..+|+.||++|+++|+
T Consensus         2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~g~   36 (36)
T smart00671        2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAELGN   36 (36)
T ss_pred             HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHccC
Confidence            45566666666666666666666666666665553

These represent a subfamily of TPR (tetratricopeptide repeat) sequences.

>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []

Probab=98.57  E-value=7.1e-08  Score=62.39  Aligned_cols=34  Identities=26%  Similarity=0.342  Sum_probs=16.5

Q ss_pred             HHHHHHH--HHHhccC-CCCCCHHHHHHHHHHHHhcC
Q 018965          170 DAVRELG--HCLQDGY-GVRQNIEKGRRLLIEANARE  203 (348)
Q Consensus       170 ~A~~~Lg--~~y~~G~-Gv~~d~~~A~~w~~~Aa~~G  203 (348)
                      +|++.||  .+|.+|. |+++|.++|++||++|+++|
T Consensus         2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~g   38 (39)
T PF08238_consen    2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQG   38 (39)
T ss_dssp             HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHhhhhccCCccccccchHHHHHHHHHcc
Confidence            3444444  4444444 44445555555555554444

Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.

>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []

Probab=98.52  E-value=1.5e-07  Score=60.87  Aligned_cols=36  Identities=36%  Similarity=0.560  Sum_probs=32.8

Q ss_pred             HHHHHHHH--HHHHccC-CCCCCccCHHHHHHHHHHHHhCCC
Q 018965          130 APALYSLA--VIQFNGS-GGGKNEKDLRAGVALCARAASIGH  168 (348)
Q Consensus       130 ~~A~~~Lg--~~y~~G~-g~~~~~~d~~~A~~~~~kAA~~G~  168 (348)
                      ++|+|.||  .+|..|. |   +++|+++|++||++||++||
T Consensus         1 a~A~~~lg~~~~~~~g~~g---~~~d~~~A~~~~~~Aa~~g~   39 (39)
T PF08238_consen    1 AEAQYNLGMYYMYYNGKGG---VPKDYEKAFKWYEKAAEQGH   39 (39)
T ss_dssp             HHHHHHHHHHHHHHHTSTS---SCHHHHHHHHHHHHHHHTT-
T ss_pred             ChHHHHHHHHHhhhhccCC---ccccccchHHHHHHHHHccC
Confidence            57999999  8889999 6   99999999999999999986

Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.

>smart00671 SEL1 Sel1-like repeats

Probab=98.52  E-value=1.5e-07  Score=59.61  Aligned_cols=36  Identities=33%  Similarity=0.479  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhCCC
Q 018965          130 APALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASIGH  168 (348)
Q Consensus       130 ~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~G~  168 (348)
                      +.|++.||.+|..|.|   +++|..+|+.||++||++|+
T Consensus         1 ~~a~~~lg~~~~~G~g---~~~d~~~A~~~~~~Aa~~g~   36 (36)
T smart00671        1 AEAQYNLGQMYEYGLG---VKKDLEKALEYYKKAAELGN   36 (36)
T ss_pred             CHHHHHHHHHHHcCCC---CCcCHHHHHHHHHHHHHccC
Confidence            4689999999999999   99999999999999999985

These represent a subfamily of TPR (tetratricopeptide repeat) sequences.

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=98.22  E-value=1.8e-07  Score=85.53  Aligned_cols=44  Identities=41%  Similarity=1.003  Sum_probs=37.1

Q ss_pred             cccccCCCCCCCCccccccccCCCCCceeecChHHHHHhchhhchhcCCCC
Q 018965          270 LRLCSYSGCGRPETRVHEYRRCSVCGKVNYCSRACQAIDWKTRHKRECVPP  320 (348)
Q Consensus       270 ~~~C~~~~C~~~~~~~~~l~~C~~C~~~~YCs~~CQ~~~W~~~Hk~~C~~~  320 (348)
                      ...|+  .||.+..    -++|+.|+.+.||+++||+-||.. ||+.|+-+
T Consensus       319 ~~fCs--tCG~~ga----~KrCs~CKav~YCdqeCQk~hWf~-HKK~C~~L  362 (396)
T KOG1710|consen  319 CQFCS--TCGHPGA----KKRCSQCKAVAYCDQECQKFHWFI-HKKVCSFL  362 (396)
T ss_pred             ccccc--ccCCCCc----cchhhhhHHHHHHHHHHHHhhhHH-HHHHHHHH
Confidence            34666  4776654    489999999999999999999998 99999865

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=97.88  E-value=0.00045  Score=61.54  Aligned_cols=120  Identities=13%  Similarity=0.058  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .++++..|+++.+.  +|+++.+.||.+|. ...+.++|+..|++|....  ++...+.+|.++....|    ..+..+|
T Consensus        55 ~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~-~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g----~~~~~~A  129 (198)
T PRK10370         55 PEAQLQALQDKIRANPQNSEQWALLGEYYL-WRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAG----QHMTPQT  129 (198)
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC----CCCcHHH
Confidence            57788888887775  79999999999998 7889999999999999865  78899999986422222    1146899


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 018965          157 VALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFFQSVS  209 (348)
Q Consensus       157 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~~A~~  209 (348)
                      ...|+++.+.  .++.+.+.||..+..    ..|+++|+.+|+++.+...+....
T Consensus       130 ~~~l~~al~~dP~~~~al~~LA~~~~~----~g~~~~Ai~~~~~aL~l~~~~~~r  180 (198)
T PRK10370        130 REMIDKALALDANEVTALMLLASDAFM----QADYAQAIELWQKVLDLNSPRVNR  180 (198)
T ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCccH
Confidence            9999999876  589999999998875    569999999999998877765443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.71  E-value=0.00092  Score=54.84  Aligned_cols=106  Identities=18%  Similarity=0.050  Sum_probs=84.7

Q ss_pred             HHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHH
Q 018965           87 FLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCAR  162 (348)
Q Consensus        87 ~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~k  162 (348)
                      .|+++.+.  .+..+++.+|..++ ..++..+|..+|+++.+.  .++.+.+.+|.+|..       ..++.+|..+|++
T Consensus         5 ~~~~~l~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-------~~~~~~A~~~~~~   76 (135)
T TIGR02552         5 TLKDLLGLDSEQLEQIYALAYNLY-QQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQM-------LKEYEEAIDAYAL   76 (135)
T ss_pred             hHHHHHcCChhhHHHHHHHHHHHH-HcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence            34444444  36788899999888 567899999999998774  477899999999964       2368999999999


Q ss_pred             HHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCC
Q 018965          163 AASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREF  204 (348)
Q Consensus       163 AA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~  204 (348)
                      +.+.  .++...+.+|.+|..    ..|.++|..+|+++.+...
T Consensus        77 ~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p  116 (135)
T TIGR02552        77 AAALDPDDPRPYFHAAECLLA----LGEPESALKALDLAIEICG  116 (135)
T ss_pred             HHhcCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcc
Confidence            8765  468899999998885    5689999999999987654

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=97.61  E-value=0.0077  Score=52.65  Aligned_cols=111  Identities=14%  Similarity=0.110  Sum_probs=91.4

Q ss_pred             cHHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHccCCCCCCccCH
Q 018965           80 WSDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK----SHAPALYSLAVIQFNGSGGGKNEKDL  153 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~----G~~~A~~~Lg~~y~~G~g~~~~~~d~  153 (348)
                      ..++|..+|+++.+.  .++.+.+.+|.+|. ..++.++|+.+|+++.+.    ......+.+|.+|..       ..++
T Consensus        80 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~  151 (234)
T TIGR02521        80 ELEKAEDSFRRALTLNPNNGDVLNNYGTFLC-QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALK-------AGDF  151 (234)
T ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHH-------cCCH
Confidence            378999999998875  56788999999987 667999999999999874    356788899988853       2378


Q ss_pred             HHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          154 RAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       154 ~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                      .+|..+|.++.+.  .++.+.+.+|.+|..    ..+.++|..+++++.+.
T Consensus       152 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~  198 (234)
T TIGR02521       152 DKAEKYLTRALQIDPQRPESLLELAELYYL----RGQYKDARAYLERYQQT  198 (234)
T ss_pred             HHHHHHHHHHHHhCcCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence            9999999999875  467889999998875    56889999999998775

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.59  E-value=0.0033  Score=61.74  Aligned_cols=109  Identities=15%  Similarity=0.136  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHHHCC--CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFAG--NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G--~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      ...|+.-|++|.+-.  |-.|.|.||++|. +-.-+.=|+.+|++|.+.  .++.-...||.||.. .      -.+++|
T Consensus       380 t~AAi~sYRrAvdi~p~DyRAWYGLGQaYe-im~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k-l------~~~~eA  451 (559)
T KOG1155|consen  380 THAAIESYRRAVDINPRDYRAWYGLGQAYE-IMKMHFYALYYFQKALELKPNDSRLWVALGECYEK-L------NRLEEA  451 (559)
T ss_pred             cHHHHHHHHHHHhcCchhHHHHhhhhHHHH-HhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHH-h------ccHHHH
Confidence            678999999999875  6679999999997 445566799999999875  578888899999953 2      257899


Q ss_pred             HHHHHHHHhCCCH--HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965          157 VALCARAASIGHV--DAVRELGHCLQDGYGVRQNIEKGRRLLIEANA  201 (348)
Q Consensus       157 ~~~~~kAA~~G~~--~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~  201 (348)
                      +..|.+|...|++  .+.+.||.+|++    -+|.++|..+|++-.+
T Consensus       452 iKCykrai~~~dte~~~l~~LakLye~----l~d~~eAa~~yek~v~  494 (559)
T KOG1155|consen  452 IKCYKRAILLGDTEGSALVRLAKLYEE----LKDLNEAAQYYEKYVE  494 (559)
T ss_pred             HHHHHHHHhccccchHHHHHHHHHHHH----HHhHHHHHHHHHHHHH
Confidence            9999999999988  899999999987    5688999999988765

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.58  E-value=0.0017  Score=65.81  Aligned_cols=110  Identities=19%  Similarity=0.109  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .+-|+.-|++|.+.  ..++|..+||..+- ...+..+|..+|.+|-..  .|++|+++||.+|..- |      .++.|
T Consensus       302 ldlAI~~Ykral~~~P~F~~Ay~NlanALk-d~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~-~------~~e~A  373 (966)
T KOG4626|consen  302 LDLAIDTYKRALELQPNFPDAYNNLANALK-DKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQ-G------KIEEA  373 (966)
T ss_pred             HHHHHHHHHHHHhcCCCchHHHhHHHHHHH-hccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh-c------cchHH
Confidence            56677777777665  45777777777665 446677777777777654  3677777777777431 1      34667


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          157 VALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       157 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                      ..+|++|-+-  +.+.|..+||.+|.+    .-++.+|+..|+.|..-
T Consensus       374 ~~ly~~al~v~p~~aaa~nNLa~i~kq----qgnl~~Ai~~YkealrI  417 (966)
T KOG4626|consen  374 TRLYLKALEVFPEFAAAHNNLASIYKQ----QGNLDDAIMCYKEALRI  417 (966)
T ss_pred             HHHHHHHHhhChhhhhhhhhHHHHHHh----cccHHHHHHHHHHHHhc
Confidence            7777776653  566677777777754    33566666666666443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=97.58  E-value=0.002  Score=54.26  Aligned_cols=109  Identities=17%  Similarity=0.141  Sum_probs=85.2

Q ss_pred             HHHHHHHHCCCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHH
Q 018965           86 RFLKRCVFAGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARA  163 (348)
Q Consensus        86 ~~~~kaA~~G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kA  163 (348)
                      .+|+++.+.. |...+.+|..+. ..+++++|+..|+++...  .++.+.+.+|.++.. .|      ++++|..+|.+|
T Consensus        14 ~~~~~al~~~-p~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~g------~~~~A~~~y~~A   84 (144)
T PRK15359         14 DILKQLLSVD-PETVYASGYASW-QEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMM-LK------EYTTAINFYGHA   84 (144)
T ss_pred             HHHHHHHHcC-HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-Hh------hHHHHHHHHHHH
Confidence            4666665543 555777787776 678889999999998877  478899999988864 23      789999999999


Q ss_pred             HhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHH
Q 018965          164 ASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFFQS  207 (348)
Q Consensus       164 A~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~~A  207 (348)
                      .+.  +++.+.+++|.+|..    ..++++|+..|++|.......+
T Consensus        85 l~l~p~~~~a~~~lg~~l~~----~g~~~eAi~~~~~Al~~~p~~~  126 (144)
T PRK15359         85 LMLDASHPEPVYQTGVCLKM----MGEPGLAREAFQTAIKMSYADA  126 (144)
T ss_pred             HhcCCCCcHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCh
Confidence            874  789999999998875    4588999999999987654433

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=97.52  E-value=0.0046  Score=59.94  Aligned_cols=110  Identities=17%  Similarity=0.165  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHCC--C-----HHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCcc
Q 018965           81 SDSAHRFLKRCVFAG--N-----LEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEK  151 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G--~-----~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~  151 (348)
                      .++|...+++..+.+  +     ......+|.++. ..++.++|+.+|+++.+..  +..+.+.||.+|.. .|      
T Consensus       157 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g------  228 (389)
T PRK11788        157 WQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL-ARGDLDAARALLKKALAADPQCVRASILLGDLALA-QG------  228 (389)
T ss_pred             HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHH-CC------
Confidence            566666666665532  1     123345555555 4556677777777765433  55666677766643 22      


Q ss_pred             CHHHHHHHHHHHHhCCC---HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          152 DLRAGVALCARAASIGH---VDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       152 d~~~A~~~~~kAA~~G~---~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                      ++++|.++|+++.+.+.   ..+...|+.+|..    ..+.++|..+++++.+.
T Consensus       229 ~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~----~g~~~~A~~~l~~~~~~  278 (389)
T PRK11788        229 DYAAAIEALERVEEQDPEYLSEVLPKLMECYQA----LGDEAEGLEFLRRALEE  278 (389)
T ss_pred             CHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence            56677777777765432   2345566665543    23666666666666554

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=97.50  E-value=0.0042  Score=54.36  Aligned_cols=113  Identities=12%  Similarity=0.106  Sum_probs=93.4

Q ss_pred             cHHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHH
Q 018965           80 WSDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRA  155 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~  155 (348)
                      ..++|..+++++.+.  .++.+.+.+|.+|. ..++.++|+.+|+++.+.  .++.+.+++|.+|..       ..++.+
T Consensus        46 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-------~g~~~~  117 (234)
T TIGR02521        46 DLEVAKENLDKALEHDPDDYLAYLALALYYQ-QLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQ-------QGKYEQ  117 (234)
T ss_pred             CHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-------cccHHH
Confidence            378999999998765  57889999999988 678999999999999875  467899999999863       237899


Q ss_pred             HHHHHHHHHhC----CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCC
Q 018965          156 GVALCARAASI----GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREF  204 (348)
Q Consensus       156 A~~~~~kAA~~----G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~  204 (348)
                      |..+|+++.+.    ......+.+|.+|..    ..+..+|..+|.++.....
T Consensus       118 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~  166 (234)
T TIGR02521       118 AMQQFEQAIEDPLYPQPARSLENAGLCALK----AGDFDKAEKYLTRALQIDP  166 (234)
T ss_pred             HHHHHHHHHhccccccchHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCc
Confidence            99999999874    456788889988864    5689999999999987643

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.47  E-value=0.0014  Score=66.40  Aligned_cols=109  Identities=21%  Similarity=0.208  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .+.|+..|.+|+..  +++.+.-+||.+|. ...+.+.|+.-|++|.+..  .++|..+||..+-+ .|      +..+|
T Consensus       268 ~d~Avs~Y~rAl~lrpn~A~a~gNla~iYy-eqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd-~G------~V~ea  339 (966)
T KOG4626|consen  268 FDRAVSCYLRALNLRPNHAVAHGNLACIYY-EQGLLDLAIDTYKRALELQPNFPDAYNNLANALKD-KG------SVTEA  339 (966)
T ss_pred             chHHHHHHHHHHhcCCcchhhccceEEEEe-ccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHh-cc------chHHH
Confidence            56677777776664  45666667777766 5678899999999998764  78999999988843 35      78999


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965          157 VALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANA  201 (348)
Q Consensus       157 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~  201 (348)
                      ..+|.+|-..  .+++||++||.+|..    .-.+++|..+|++|-+
T Consensus       340 ~~cYnkaL~l~p~hadam~NLgni~~E----~~~~e~A~~ly~~al~  382 (966)
T KOG4626|consen  340 VDCYNKALRLCPNHADAMNNLGNIYRE----QGKIEEATRLYLKALE  382 (966)
T ss_pred             HHHHHHHHHhCCccHHHHHHHHHHHHH----hccchHHHHHHHHHHh
Confidence            9999999886  689999999999975    2356789999998854

>PRK12370 invasion protein regulator; Provisional

Probab=97.37  E-value=0.004  Score=64.11  Aligned_cols=109  Identities=18%  Similarity=0.113  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .++|...+++|.+.  +++++.+.+|.++. ..++.++|+.+|++|.+..  ++.+.+.||.+|.. .|      ++++|
T Consensus       320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~G------~~~eA  391 (553)
T PRK12370        320 MIKAKEHAIKATELDHNNPQALGLLGLINT-IHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFM-AG------QLEEA  391 (553)
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CC------CHHHH
Confidence            45666666666654  45666666666655 4455666666666665543  45566666666543 22      45666


Q ss_pred             HHHHHHHHhCC--CHHHHHHHHH-HHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          157 VALCARAASIG--HVDAVRELGH-CLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       157 ~~~~~kAA~~G--~~~A~~~Lg~-~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                      +.+|++|.+..  ++.+.+.++. .|..     .++++|+.+++++..+
T Consensus       392 i~~~~~Al~l~P~~~~~~~~~~~~~~~~-----g~~eeA~~~~~~~l~~  435 (553)
T PRK12370        392 LQTINECLKLDPTRAAAGITKLWITYYH-----TGIDDAIRLGDELRSQ  435 (553)
T ss_pred             HHHHHHHHhcCCCChhhHHHHHHHHHhc-----cCHHHHHHHHHHHHHh
Confidence            66666666542  3333333332 3332     2456666666666543

>PRK12370 invasion protein regulator; Provisional

Probab=97.36  E-value=0.015  Score=59.81  Aligned_cols=112  Identities=17%  Similarity=0.118  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhh--h------ccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCC
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRF--Y------CLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGK  148 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~--~------~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~  148 (348)
                      .++|+..|++|.+.  +++.++..||.+|.  +      ...+..+|+..+++|.+.  +++.+...+|.++.. .|   
T Consensus       277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~-~g---  352 (553)
T PRK12370        277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTI-HS---  352 (553)
T ss_pred             HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cc---
Confidence            45677777777664  36666777776554  1      223466777777777765  366677777766642 22   


Q ss_pred             CccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965          149 NEKDLRAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE  203 (348)
Q Consensus       149 ~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G  203 (348)
                         ++++|..+|++|.+.  .++.+.+.||.+|..    ..+.++|+.+|++|.+..
T Consensus       353 ---~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~----~G~~~eAi~~~~~Al~l~  402 (553)
T PRK12370        353 ---EYIVGSLLFKQANLLSPISADIKYYYGWNLFM----AGQLEEALQTINECLKLD  402 (553)
T ss_pred             ---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcC
Confidence               567777777777654  356677777776654    246677777777776543

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.35  E-value=0.0046  Score=60.75  Aligned_cols=118  Identities=15%  Similarity=0.107  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHHHHCC--CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFAG--NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G--~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .++|+.+|++|...+  ...|.-.+|.=|. .=+|...|++-|++|.+-.  +-.|.|.||.+|..       -+=+.-|
T Consensus       346 HEKAv~YFkRALkLNp~~~~aWTLmGHEyv-EmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei-------m~Mh~Ya  417 (559)
T KOG1155|consen  346 HEKAVMYFKRALKLNPKYLSAWTLMGHEYV-EMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI-------MKMHFYA  417 (559)
T ss_pred             HHHHHHHHHHHHhcCcchhHHHHHhhHHHH-HhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH-------hcchHHH
Confidence            799999999998864  6678888887776 5689999999999999876  67899999999963       2346889


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCH--HHHHh
Q 018965          157 VALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFF--QSVSK  210 (348)
Q Consensus       157 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~--~A~~~  210 (348)
                      +.+|++|.+.  .+..-...||.+|..    --.+++|++.|++|...|+.  .|...
T Consensus       418 LyYfqkA~~~kPnDsRlw~aLG~CY~k----l~~~~eAiKCykrai~~~dte~~~l~~  471 (559)
T KOG1155|consen  418 LYYFQKALELKPNDSRLWVALGECYEK----LNRLEEAIKCYKRAILLGDTEGSALVR  471 (559)
T ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHH----hccHHHHHHHHHHHHhccccchHHHHH
Confidence            9999999986  578888999999975    45789999999999999998  44443

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.34  E-value=0.005  Score=60.33  Aligned_cols=94  Identities=21%  Similarity=0.210  Sum_probs=78.6

Q ss_pred             cHHHHHHHHHHHHHCC--CHHHHHHhhhhhhhccCCHHHHHHHHHH--HHhCCCHHHHHHHHHHHHccCCCCCCccCHHH
Q 018965           80 WSDSAHRFLKRCVFAG--NLEACYTLGMIRFYCLQNRSSGTSLMAK--AAMKSHAPALYSLAVIQFNGSGGGKNEKDLRA  155 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~G--~~~A~~~Lg~~y~~~~~d~~~A~~~~~~--AA~~G~~~A~~~Lg~~y~~G~g~~~~~~d~~~  155 (348)
                      ..++|..+|+.|....  -.+|.|++|+-+. ...+.++|+++|.+  +.-.++++-.++++.+|.       .-.|+.+
T Consensus       505 d~dka~~~ykeal~ndasc~ealfniglt~e-~~~~ldeald~f~klh~il~nn~evl~qianiye-------~led~aq  576 (840)
T KOG2003|consen  505 DLDKAAEFYKEALNNDASCTEALFNIGLTAE-ALGNLDEALDCFLKLHAILLNNAEVLVQIANIYE-------LLEDPAQ  576 (840)
T ss_pred             cHHHHHHHHHHHHcCchHHHHHHHHhcccHH-HhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-------HhhCHHH
Confidence            3899999999987654  4689999999987 56789999999865  667889999999999996       3468999


Q ss_pred             HHHHHHHHHhC--CCHHHHHHHHHHHhc
Q 018965          156 GVALCARAASI--GHVDAVRELGHCLQD  181 (348)
Q Consensus       156 A~~~~~kAA~~--G~~~A~~~Lg~~y~~  181 (348)
                      |++||.++...  .++.-...||.+|..
T Consensus       577 aie~~~q~~slip~dp~ilskl~dlydq  604 (840)
T KOG2003|consen  577 AIELLMQANSLIPNDPAILSKLADLYDQ  604 (840)
T ss_pred             HHHHHHHhcccCCCCHHHHHHHHHHhhc
Confidence            99999999875  678888888888843

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=97.34  E-value=0.0046  Score=64.41  Aligned_cols=112  Identities=10%  Similarity=0.025  Sum_probs=81.6

Q ss_pred             cHHHHHHHHHHHHHCC-----CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccC
Q 018965           80 WSDSAHRFLKRCVFAG-----NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKD  152 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~G-----~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d  152 (348)
                      ++++|+.+|+++.+.+     ++.+.+.+|.+|+ ..++.++|+.+|+++.+.  +++.+.+.+|.+|.. .|      +
T Consensus       309 ~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~-~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~-~g------~  380 (615)
T TIGR00990       309 SYEEAARAFEKALDLGKLGEKEAIALNLRGTFKC-LKGKHLEALADLSKSIELDPRVTQSYIKRASMNLE-LG------D  380 (615)
T ss_pred             hHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-CC------C
Confidence            4677888888888754     4557777787776 567888888888888764  356677888887753 22      6


Q ss_pred             HHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965          153 LRAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE  203 (348)
Q Consensus       153 ~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G  203 (348)
                      +++|+..|+++.+.  .++.+.+.+|.+|..    ..|+++|+.+|++|.+..
T Consensus       381 ~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~kal~l~  429 (615)
T TIGR00990       381 PDKAEEDFDKALKLNSEDPDIYYHRAQLHFI----KGEFAQAGKDYQKSIDLD  429 (615)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcC
Confidence            78888888887765  467888888887764    457788888888887654

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=97.32  E-value=0.015  Score=48.88  Aligned_cols=90  Identities=16%  Similarity=0.074  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .++|+..|+++...  .++++.+.+|.++. ..+++++|+.+|++|.+.  +++.+.+++|.+|.. .|      ++++|
T Consensus        40 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~-~g------~~~eA  111 (144)
T PRK15359         40 YSRAVIDFSWLVMAQPWSWRAHIALAGTWM-MLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM-MG------EPGLA  111 (144)
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-cC------CHHHH
Confidence            67899999998886  68899999999987 678999999999999985  589999999999974 24      78999


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHH
Q 018965          157 VALCARAASI--GHVDAVRELGHC  178 (348)
Q Consensus       157 ~~~~~kAA~~--G~~~A~~~Lg~~  178 (348)
                      +..|++|.+.  +++....++|..
T Consensus       112 i~~~~~Al~~~p~~~~~~~~~~~~  135 (144)
T PRK15359        112 REAFQTAIKMSYADASWSEIRQNA  135 (144)
T ss_pred             HHHHHHHHHhCCCChHHHHHHHHH
Confidence            9999999875  566666666653

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=97.27  E-value=0.018  Score=59.95  Aligned_cols=112  Identities=15%  Similarity=0.134  Sum_probs=93.4

Q ss_pred             cHHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHH
Q 018965           80 WSDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRA  155 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~  155 (348)
                      ..++|+..|+++.+.  .++++.+.+|.+|+ ..++.++|+.+|+++.+..  +..+.++||.+|.. .|      ++.+
T Consensus       380 ~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~-~g------~~~e  451 (615)
T TIGR00990       380 DPDKAEEDFDKALKLNSEDPDIYYHRAQLHF-IKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK-EG------SIAS  451 (615)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH-CC------CHHH
Confidence            378899999998776  57899999999988 6789999999999998764  67888999998863 33      7899


Q ss_pred             HHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965          156 GVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE  203 (348)
Q Consensus       156 A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G  203 (348)
                      |+..|+++.+.  .++.+.+.+|.+|..    ..++++|+..|++|.+..
T Consensus       452 A~~~~~~al~~~P~~~~~~~~lg~~~~~----~g~~~~A~~~~~~Al~l~  497 (615)
T TIGR00990       452 SMATFRRCKKNFPEAPDVYNYYGELLLD----QNKFDEAIEKFDTAIELE  497 (615)
T ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcC
Confidence            99999998764  568899999998876    458999999999998764

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=97.22  E-value=0.007  Score=66.22  Aligned_cols=114  Identities=15%  Similarity=0.035  Sum_probs=89.1

Q ss_pred             cHHHHHHHHHHHHHCC-CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           80 WSDSAHRFLKRCVFAG-NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~G-~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      ..++|+.+|+++.+.. ++++.+++|.++. ..++.++|+.+|++|.+..  ++.+.++||..+.. .|      +.++|
T Consensus       591 r~~eAl~~~~~AL~l~P~~~a~~~LA~~l~-~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~-~G------~~eeA  662 (987)
T PRK09782        591 QPELALNDLTRSLNIAPSANAYVARATIYR-QRHNVPAAVSDLRAALELEPNNSNYQAALGYALWD-SG------DIAQS  662 (987)
T ss_pred             CHHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CC------CHHHH
Confidence            3778888888887643 4778888888877 5678888889998888764  78888888877754 23      67889


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCH
Q 018965          157 VALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFF  205 (348)
Q Consensus       157 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~  205 (348)
                      +..|++|.+.  +++.+.++||.+|..    ..|+++|+..|++|.+..-.
T Consensus       663 i~~l~~AL~l~P~~~~a~~nLA~al~~----lGd~~eA~~~l~~Al~l~P~  709 (987)
T PRK09782        663 REMLERAHKGLPDDPALIRQLAYVNQR----LDDMAATQHYARLVIDDIDN  709 (987)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCC
Confidence            9999998875  688899999998865    45888999999998766543

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.18  E-value=0.0075  Score=47.65  Aligned_cols=95  Identities=18%  Similarity=0.154  Sum_probs=76.9

Q ss_pred             HHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--C---HHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--C--
Q 018965           97 LEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--H---APALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--G--  167 (348)
Q Consensus        97 ~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~---~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G--  167 (348)
                      ++.+|.+|..+. ..++.++|+..|+++.+..  +   +.+.+.+|.+|..       ..++.+|+.+|+++...  +  
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~A~~~~~~~~~~~p~~~   73 (119)
T TIGR02795         2 EEAYYDAALLVL-KAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA-------QGKYADAAKAFLAVVKKYPKSP   73 (119)
T ss_pred             cHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh-------hccHHHHHHHHHHHHHHCCCCC
Confidence            567888888887 6789999999999998753  2   5689999999964       23789999999998864  2  


Q ss_pred             -CHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965          168 -HVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE  203 (348)
Q Consensus       168 -~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G  203 (348)
                       .+.+.+.+|.+|..    ..+..+|..+|.++.+..
T Consensus        74 ~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~  106 (119)
T TIGR02795        74 KAPDALLKLGMSLQE----LGDKEKAKATLQQVIKRY  106 (119)
T ss_pred             cccHHHHHHHHHHHH----hCChHHHHHHHHHHHHHC
Confidence             26789999999875    568899999999987753

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.18  E-value=0.0058  Score=52.81  Aligned_cols=99  Identities=14%  Similarity=0.154  Sum_probs=72.8

Q ss_pred             CCCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--
Q 018965           94 AGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS-----HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--  166 (348)
Q Consensus        94 ~G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G-----~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--  166 (348)
                      .+.+.+.+.+|..|. ..++.++|+.+|++|.+..     .+.+.+.||.+|.. .|      ++++|+.+|++|.+.  
T Consensus        32 ~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~-~g------~~~~A~~~~~~al~~~p  103 (172)
T PRK02603         32 AKEAFVYYRDGMSAQ-ADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYAS-NG------EHDKALEYYHQALELNP  103 (172)
T ss_pred             hhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHHhCc
Confidence            466778889998887 6789999999999998653     24688999999864 33      789999999999875  


Q ss_pred             CCHHHHHHHHHHHhc-cC--CCCCCHHHHHHHHHHHH
Q 018965          167 GHVDAVRELGHCLQD-GY--GVRQNIEKGRRLLIEAN  200 (348)
Q Consensus       167 G~~~A~~~Lg~~y~~-G~--Gv~~d~~~A~~w~~~Aa  200 (348)
                      .+..+.+.+|.+|.. |.  --..+.++|...|.+|.
T Consensus       104 ~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~  140 (172)
T PRK02603        104 KQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAA  140 (172)
T ss_pred             ccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHH
Confidence            578888889988754 21  11235555555555554

>PRK11189 lipoprotein NlpI; Provisional

Probab=97.10  E-value=0.017  Score=54.65  Aligned_cols=113  Identities=12%  Similarity=0.000  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .++|...|+++.+.  .++++.+.+|.+|. ..++.++|+..|++|.+.  ++..+.+++|.+|... |      ++++|
T Consensus        80 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~-g------~~~eA  151 (296)
T PRK11189         80 RALARNDFSQALALRPDMADAYNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYG-G------RYELA  151 (296)
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-C------CHHHH
Confidence            56777777777664  46777788887776 566777888888877664  4677777788777542 2      56778


Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCC
Q 018965          157 VALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREF  204 (348)
Q Consensus       157 ~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~  204 (348)
                      +..|+++.+....+....+...+.   ....+..+|...|.+++...+
T Consensus       152 ~~~~~~al~~~P~~~~~~~~~~l~---~~~~~~~~A~~~l~~~~~~~~  196 (296)
T PRK11189        152 QDDLLAFYQDDPNDPYRALWLYLA---ESKLDPKQAKENLKQRYEKLD  196 (296)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHH---HccCCHHHHHHHHHHHHhhCC
Confidence            888888777643333222222111   123467778887777665444

>PRK11189 lipoprotein NlpI; Provisional

Probab=97.08  E-value=0.017  Score=54.49  Aligned_cols=112  Identities=13%  Similarity=0.040  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHHC------CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccC
Q 018965           81 SDSAHRFLKRCVFA------GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKD  152 (348)
Q Consensus        81 ~~~A~~~~~kaA~~------G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d  152 (348)
                      .+.++.-+.+..+.      +.+...|.+|.+|. ..++..+|+..|++|.+.  .++.+.+.+|..|..       ..+
T Consensus        42 ~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~-------~g~  113 (296)
T PRK11189         42 QEVILARLNQILASRDLTDEERAQLHYERGVLYD-SLGLRALARNDFSQALALRPDMADAYNYLGIYLTQ-------AGN  113 (296)
T ss_pred             HHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-------CCC
Confidence            45556666665542      33667888888887 567788888888888765  467888888888753       237


Q ss_pred             HHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCC
Q 018965          153 LRAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREF  204 (348)
Q Consensus       153 ~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~  204 (348)
                      +++|...|.+|.+.  .+..+.+++|.+|..    ..++++|+..|+++.+...
T Consensus       114 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~----~g~~~eA~~~~~~al~~~P  163 (296)
T PRK11189        114 FDAAYEAFDSVLELDPTYNYAYLNRGIALYY----GGRYELAQDDLLAFYQDDP  163 (296)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCC
Confidence            88888888888765  578888888887765    3477888888888877653

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=96.92  E-value=0.037  Score=47.71  Aligned_cols=109  Identities=16%  Similarity=0.104  Sum_probs=72.6

Q ss_pred             cHHHHHHHHHHHHHCC-----CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccC
Q 018965           80 WSDSAHRFLKRCVFAG-----NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKD  152 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~G-----~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d  152 (348)
                      ..++|+.+|+++.+..     .+.+.+.+|.++. ..++.++|+.+|++|.+.  .++.+.+.+|.+|..-.-...-..+
T Consensus        50 ~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~  128 (172)
T PRK02603         50 EYAEALENYEEALKLEEDPNDRSYILYNMGIIYA-SNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGD  128 (172)
T ss_pred             CHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhC
Confidence            3789999999998653     2468999999998 578999999999999986  5688999999988642110001235


Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHhccC-CCCCCHHHHHHHHHHHHh
Q 018965          153 LRAGVALCARAASIGHVDAVRELGHCLQDGY-GVRQNIEKGRRLLIEANA  201 (348)
Q Consensus       153 ~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~-Gv~~d~~~A~~w~~~Aa~  201 (348)
                      ..+|...|.+|.+            ++.... --+.|+..+..|+..+.+
T Consensus       129 ~~~A~~~~~~A~~------------~~~~a~~~~p~~~~~~~~~~~~~~~  166 (172)
T PRK02603        129 QDEAEALFDKAAE------------YWKQAIRLAPNNYIEAQNWLKTTGR  166 (172)
T ss_pred             HHHHHHHHHHHHH------------HHHHHHhhCchhHHHHHHHHHhcCc
Confidence            6666666655532            111111 125556667777766544

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.92  E-value=0.0033  Score=45.35  Aligned_cols=63  Identities=29%  Similarity=0.356  Sum_probs=39.0

Q ss_pred             CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHh
Q 018965           96 NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAAS  165 (348)
Q Consensus        96 ~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~  165 (348)
                      ++...+.+|.+++ ..+++++|+.+|++|.+..  ++.+.+++|.+|..- |     +++.+|+..|++|.+
T Consensus         2 ~a~~~~~~g~~~~-~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~-~-----~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    2 NAEAWYNLGQIYF-QQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKL-G-----KDYEEAIEDFEKALK   66 (69)
T ss_dssp             SHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHT-T-----THHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-C-----ccHHHHHHHHHHHHH
Confidence            4556666676666 4666777777777776553  466667777776531 1     246666666666653

...

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=96.88  E-value=0.066  Score=60.05  Aligned_cols=118  Identities=19%  Similarity=0.127  Sum_probs=89.4

Q ss_pred             CcHHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCCC--HHH--------------HHHHHHHH
Q 018965           79 NWSDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKSH--APA--------------LYSLAVIQ  140 (348)
Q Consensus        79 ~~~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G~--~~A--------------~~~Lg~~y  140 (348)
                      ...++|+..|+++.+.  .++++.+.||.+|+ ..++.++|+.+|++|.+..-  ..+              ...+|..+
T Consensus       283 g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~-~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~  361 (1157)
T PRK11447        283 GQGGKAIPELQQAVRANPKDSEALGALGQAYS-QQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA  361 (1157)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH
Confidence            3478999999998885  68999999999998 67899999999999987542  111              11234444


Q ss_pred             HccCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc--CCHHHH
Q 018965          141 FNGSGGGKNEKDLRAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR--EFFQSV  208 (348)
Q Consensus       141 ~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~--G~~~A~  208 (348)
                      .       ...++++|...|+++.+.  .++.+.+.||.+|..    ..+.++|+.+|++|.+.  ++..+.
T Consensus       362 ~-------~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~----~g~~~eA~~~y~~aL~~~p~~~~a~  422 (1157)
T PRK11447        362 L-------KANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMA----RKDYAAAERYYQQALRMDPGNTNAV  422 (1157)
T ss_pred             H-------HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            3       123789999999999875  678899999998875    56899999999998764  344443

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=96.87  E-value=0.022  Score=63.82  Aligned_cols=117  Identities=15%  Similarity=0.133  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHHccCCCC---------
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAM--KSHAPALYSLAVIQFNGSGGG---------  147 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~--~G~~~A~~~Lg~~y~~G~g~~---------  147 (348)
                      .++|...|+++.+.  .++.+.+.||.+|. ..++.++|+.+|+++.+  -++..+...|+.+|..+....         
T Consensus       367 ~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~-~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~  445 (1157)
T PRK11447        367 LAQAERLYQQARQVDNTDSYAVLGLGDVAM-ARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLS  445 (1157)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCC
Confidence            78899999998876  67889999999998 67899999999999987  457888888888875321000         


Q ss_pred             --------------------------CCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHH
Q 018965          148 --------------------------KNEKDLRAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEA  199 (348)
Q Consensus       148 --------------------------~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~A  199 (348)
                                                ....+.++|+.+|++|.+.  .++.+.+.||.+|..    ..+.++|+..|+++
T Consensus       446 ~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~----~G~~~~A~~~l~~a  521 (1157)
T PRK11447        446 ASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQ----AGQRSQADALMRRL  521 (1157)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Confidence                                      0024678999999999875  578899999998876    45899999999998


Q ss_pred             Hhc
Q 018965          200 NAR  202 (348)
Q Consensus       200 a~~  202 (348)
                      .+.
T Consensus       522 l~~  524 (1157)
T PRK11447        522 AQQ  524 (1157)
T ss_pred             HHc
Confidence            764

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=96.79  E-value=0.031  Score=54.14  Aligned_cols=113  Identities=21%  Similarity=0.148  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHHCCC------HHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccC
Q 018965           81 SDSAHRFLKRCVFAGN------LEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKD  152 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G~------~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d  152 (348)
                      .++|+..++++.+.++      ..+.+.||.+|. ..++.++|+.+|+++.+.  .+..+...|+.+|.. .      .+
T Consensus        85 ~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~-~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-~------g~  156 (389)
T PRK11788         85 VDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL-KAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQ-E------KD  156 (389)
T ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH-h------ch
Confidence            6788888888777643      246777788877 667888899999888864  356677888888753 2      37


Q ss_pred             HHHHHHHHHHHHhCCCH-------HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCH
Q 018965          153 LRAGVALCARAASIGHV-------DAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFF  205 (348)
Q Consensus       153 ~~~A~~~~~kAA~~G~~-------~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~  205 (348)
                      +++|.++|+++.+.+..       .....||.+|..    ..+.++|..+|+++.+....
T Consensus       157 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~  212 (389)
T PRK11788        157 WQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA----RGDLDAARALLKKALAADPQ  212 (389)
T ss_pred             HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhHCcC
Confidence            78888888888776432       133456666664    68899999999999876543

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=96.76  E-value=0.014  Score=42.36  Aligned_cols=91  Identities=19%  Similarity=0.186  Sum_probs=67.2

Q ss_pred             HHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHH
Q 018965           99 ACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVDAVRE  174 (348)
Q Consensus        99 A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~~~  174 (348)
                      +++.+|.++. ..++..+|+.+|+++.+..  ++.+.+.+|.+|..       ..++.+|..+|.++...  .+..+.+.
T Consensus         2 ~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~a~~~~~~~~~~~~~~~~~~~~   73 (100)
T cd00189           2 ALLNLGNLYY-KLGDYDEALEYYEKALELDPDNADAYYNLAAAYYK-------LGKYEEALEDYEKALELDPDNAKAYYN   73 (100)
T ss_pred             HHHHHHHHHH-HHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhCCCcchhHHHH
Confidence            4667777776 5678888999999887654  34678888888864       23678899999988765  34567788


Q ss_pred             HHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965          175 LGHCLQDGYGVRQNIEKGRRLLIEANA  201 (348)
Q Consensus       175 Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~  201 (348)
                      +|.++..    ..+.++|..++.++.+
T Consensus        74 ~~~~~~~----~~~~~~a~~~~~~~~~   96 (100)
T cd00189          74 LGLAYYK----LGKYEEALEAYEKALE   96 (100)
T ss_pred             HHHHHHH----HHhHHHHHHHHHHHHc
Confidence            8887765    3467888888887754

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=96.74  E-value=0.026  Score=48.18  Aligned_cols=94  Identities=14%  Similarity=0.098  Sum_probs=61.0

Q ss_pred             HHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHHHHH
Q 018965           98 EACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVDAVR  173 (348)
Q Consensus        98 ~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~~  173 (348)
                      +..|.+|..+. ..++.+.|...|+-...-.  ++...|+||.++.       ...++.+|++.|.+|...  .++.+.+
T Consensus        36 ~~lY~~A~~ly-~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q-------~~g~~~~AI~aY~~A~~L~~ddp~~~~  107 (157)
T PRK15363         36 NTLYRYAMQLM-EVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQ-------AQKHWGEAIYAYGRAAQIKIDAPQAPW  107 (157)
T ss_pred             HHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-------HHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence            34455555444 4566777777777766555  4556667777774       234677777777777754  5777777


Q ss_pred             HHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965          174 ELGHCLQDGYGVRQNIEKGRRLLIEANARE  203 (348)
Q Consensus       174 ~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G  203 (348)
                      ++|.+|..    -.|.+.|++-|+.|.+.-
T Consensus       108 ~ag~c~L~----lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        108 AAAECYLA----CDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             HHHHHHHH----cCCHHHHHHHHHHHHHHh
Confidence            77777765    346677777777776554

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=96.61  E-value=0.0091  Score=60.83  Aligned_cols=112  Identities=18%  Similarity=0.146  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .+.|++.|++|...  +...|+-.+|.=+. ...+.++|..+|++|..-.  |..|+|-||++|+.-       .-++.|
T Consensus       437 h~~Aik~f~RAiQldp~faYayTLlGhE~~-~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kq-------ek~e~A  508 (638)
T KOG1126|consen  437 HDTAIKCFKRAIQLDPRFAYAYTLLGHESI-ATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQ-------EKLEFA  508 (638)
T ss_pred             HHHHHHHHHHhhccCCccchhhhhcCChhh-hhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheecc-------chhhHH
Confidence            78999999998765  45667777776555 5667899999999998664  788999999999642       246889


Q ss_pred             HHHHHHHHhCC--CHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCC
Q 018965          157 VALCARAASIG--HVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREF  204 (348)
Q Consensus       157 ~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~  204 (348)
                      ...|+||.+-.  +..-+..+|.+|..    -+..++|+.+|++|.....
T Consensus       509 e~~fqkA~~INP~nsvi~~~~g~~~~~----~k~~d~AL~~~~~A~~ld~  554 (638)
T KOG1126|consen  509 EFHFQKAVEINPSNSVILCHIGRIQHQ----LKRKDKALQLYEKAIHLDP  554 (638)
T ss_pred             HHHHHhhhcCCccchhHHhhhhHHHHH----hhhhhHHHHHHHHHHhcCC
Confidence            99999999864  55566777887775    5678899999999986654

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=96.55  E-value=0.029  Score=54.52  Aligned_cols=90  Identities=17%  Similarity=0.100  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .++|+..|++|.+.  +++.+++.+|.+|+ ..++++.|+..+++|.+.  .++.+++.+|.+|.. .|      ++.+|
T Consensus        18 ~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~-~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~-lg------~~~eA   89 (356)
T PLN03088         18 FALAVDLYTQAIDLDPNNAELYADRAQANI-KLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK-LE------EYQTA   89 (356)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-hC------CHHHH
Confidence            45566666665554  35556666666655 345566666666666543  345566666655542 22      55666


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHH
Q 018965          157 VALCARAASI--GHVDAVRELGHC  178 (348)
Q Consensus       157 ~~~~~kAA~~--G~~~A~~~Lg~~  178 (348)
                      ..+|+++.+.  ++..++..++.+
T Consensus        90 ~~~~~~al~l~P~~~~~~~~l~~~  113 (356)
T PLN03088         90 KAALEKGASLAPGDSRFTKLIKEC  113 (356)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHH
Confidence            6666666554  344444444443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=96.50  E-value=0.038  Score=53.72  Aligned_cols=96  Identities=13%  Similarity=0.050  Sum_probs=78.4

Q ss_pred             hhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHH
Q 018965          103 LGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVDAVRELGHC  178 (348)
Q Consensus       103 Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~  178 (348)
                      .|...+ ..+++.+|+..|++|.+..  ++.+.+++|.+|.. .|      ++.+|+..+++|.+.  .++.+.+.+|.+
T Consensus         8 ~a~~a~-~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~-~g------~~~eAl~~~~~Al~l~P~~~~a~~~lg~~   79 (356)
T PLN03088          8 KAKEAF-VDDDFALAVDLYTQAIDLDPNNAELYADRAQANIK-LG------NFTEAVADANKAIELDPSLAKAYLRKGTA   79 (356)
T ss_pred             HHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence            344444 6789999999999998764  78999999999964 33      789999999999875  689999999998


Q ss_pred             HhccCCCCCCHHHHHHHHHHHHhcC--CHHHHHh
Q 018965          179 LQDGYGVRQNIEKGRRLLIEANARE--FFQSVSK  210 (348)
Q Consensus       179 y~~G~Gv~~d~~~A~~w~~~Aa~~G--~~~A~~~  210 (348)
                      |..    ..++.+|+.+|++|.+..  ++.++..
T Consensus        80 ~~~----lg~~~eA~~~~~~al~l~P~~~~~~~~  109 (356)
T PLN03088         80 CMK----LEEYQTAKAALEKGASLAPGDSRFTKL  109 (356)
T ss_pred             HHH----hCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            875    569999999999999875  4555543

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=96.45  E-value=0.027  Score=45.96  Aligned_cols=79  Identities=14%  Similarity=0.018  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .++|..+|+++.+.  .++.+.+.+|.+|. ..++..+|+.+|+++.+.+  ++...+.+|.+|.. .      .+.++|
T Consensus        33 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~------g~~~~A  104 (135)
T TIGR02552        33 YDEALKLFQLLAAYDPYNSRYWLGLAACCQ-MLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA-L------GEPESA  104 (135)
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-c------CCHHHH
Confidence            78899999998774  57899999999998 5678899999999997665  57899999999974 2      379999


Q ss_pred             HHHHHHHHhCC
Q 018965          157 VALCARAASIG  167 (348)
Q Consensus       157 ~~~~~kAA~~G  167 (348)
                      +.+|+++.+..
T Consensus       105 ~~~~~~al~~~  115 (135)
T TIGR02552       105 LKALDLAIEIC  115 (135)
T ss_pred             HHHHHHHHHhc
Confidence            99999998764

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=96.45  E-value=0.06  Score=46.12  Aligned_cols=96  Identities=13%  Similarity=0.038  Sum_probs=67.6

Q ss_pred             HHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--C---CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCH
Q 018965           97 LEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--S---HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHV  169 (348)
Q Consensus        97 ~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G---~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~  169 (348)
                      ..+.+.+|..+. ...++++|+.+|++|...  +   .+.+.++||.+|..       ..+.++|+..|++|.+.  .+.
T Consensus        35 a~~~~~~g~~~~-~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~-------~g~~~eA~~~~~~Al~~~~~~~  106 (168)
T CHL00033         35 AFTYYRDGMSAQ-SEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS-------NGEHTKALEYYFQALERNPFLP  106 (168)
T ss_pred             HHHHHHHHHHHH-HcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCcCcH
Confidence            456677888777 567899999999999755  3   23588999999964       23678999999998864  567


Q ss_pred             HHHHHHHHHHhc-cC--CCCCCHHHHHHHHHHHH
Q 018965          170 DAVRELGHCLQD-GY--GVRQNIEKGRRLLIEAN  200 (348)
Q Consensus       170 ~A~~~Lg~~y~~-G~--Gv~~d~~~A~~w~~~Aa  200 (348)
                      .+..++|.+|.. |.  ....|..+|..+|.+|.
T Consensus       107 ~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~  140 (168)
T CHL00033        107 QALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAA  140 (168)
T ss_pred             HHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence            788888887752 20  12345565555555553

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=96.45  E-value=0.059  Score=57.00  Aligned_cols=59  Identities=10%  Similarity=0.022  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHCC-CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Q 018965           81 SDSAHRFLKRCVFAG-NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQ  140 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G-~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y  140 (348)
                      .++|..+|+++.+.+ +....+.++.++. ..++.++|+++++++.+.  .++.+.+.+|.+|
T Consensus       719 ~~~A~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~  780 (899)
T TIGR02917       719 YPAAIQAYRKALKRAPSSQNAIKLHRALL-ASGNTAEAVKTLEAWLKTHPNDAVLRTALAELY  780 (899)
T ss_pred             HHHHHHHHHHHHhhCCCchHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            455555555554432 2234444444443 233444444444444332  2344444444444

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=96.40  E-value=0.18  Score=53.26  Aligned_cols=110  Identities=17%  Similarity=0.154  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .++|..+|.++.+.  ++....+.++.+|. ..++.++|+.+|+++.+.  .++.+.+.||.+|.. .|      ++++|
T Consensus       549 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~------~~~~A  620 (899)
T TIGR02917       549 EEEAVAWLEKAAELNPQEIEPALALAQYYL-GKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLA-AG------DLNKA  620 (899)
T ss_pred             HHHHHHHHHHHHHhCccchhHHHHHHHHHH-HCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-cC------CHHHH
Confidence            66777777776554  34556666666665 456777777777777653  356677777777753 12      56777


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          157 VALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       157 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                      +.+|+++.+.  .++.+.+.+|.+|..    ..+.++|..+|+++.+.
T Consensus       621 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~  664 (899)
T TIGR02917       621 VSSFKKLLALQPDSALALLLLADAYAV----MKNYAKAITSLKRALEL  664 (899)
T ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhc
Confidence            7777777653  456677777777654    34677777777776654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=96.35  E-value=0.0021  Score=43.22  Aligned_cols=42  Identities=29%  Similarity=0.621  Sum_probs=33.7

Q ss_pred             CCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHhHHHHhccCCchhhc
Q 018965           20 FDALPDDLLECVLSKLISSAPSPSDFINVLLTCKRLNRVGLRPTVLS   66 (348)
Q Consensus        20 ~~~l~~d~l~~il~~~a~~~~s~~d~~~~~l~~k~~~~~~~~~~~l~   66 (348)
                      ++.||+|++..||..+     ++.|+.++..+||.|+....++..+.
T Consensus         1 i~~LP~Eil~~If~~L-----~~~dl~~~~~vcr~w~~~~~~~~lW~   42 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYL-----DPRDLLRLSLVCRRWRRIANDNSLWR   42 (47)
T ss_dssp             CCCS-HHHHHHHHTTS------HHHHHHHTTSSHHHHHHHTCCCHHH
T ss_pred             ChHhHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHHCChhhhh
Confidence            4679999999999765     56799999999999999987765443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=96.33  E-value=0.039  Score=51.30  Aligned_cols=107  Identities=15%  Similarity=0.110  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHH---HHHHHHHHHhCCCHHHHHHHHHHHHccCCCCCCccCHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSS---GTSLMAKAAMKSHAPALYSLAVIQFNGSGGGKNEKDLRA  155 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~---A~~~~~~AA~~G~~~A~~~Lg~~y~~G~g~~~~~~d~~~  155 (348)
                      .++|+..|+++.+.  +|+++...|+.++. ..++..+   ++.-+.+.. ..++.-...||..|.. .|      ++++
T Consensus       162 ~~~A~~~~~~al~~~P~~~~~~~~l~~~li-~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~-lg------~~~~  232 (280)
T PF13429_consen  162 PDKALRDYRKALELDPDDPDARNALAWLLI-DMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQ-LG------RYEE  232 (280)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHH-HT-------HHH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcc-cc------cccc
Confidence            67888888887775  45677777776665 3334444   444444444 3355566677777753 22      5678


Q ss_pred             HHHHHHHHHh--CCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Q 018965          156 GVALCARAAS--IGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEAN  200 (348)
Q Consensus       156 A~~~~~kAA~--~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa  200 (348)
                      |+.||+++..  .+++..+..+|.++..    ....++|...++++.
T Consensus       233 Al~~~~~~~~~~p~d~~~~~~~a~~l~~----~g~~~~A~~~~~~~~  275 (280)
T PF13429_consen  233 ALEYLEKALKLNPDDPLWLLAYADALEQ----AGRKDEALRLRRQAL  275 (280)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHT--------------------
T ss_pred             cccccccccccccccccccccccccccc----ccccccccccccccc
Confidence            8888888776  4678888888877764    335566777666664

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=96.30  E-value=0.091  Score=55.31  Aligned_cols=59  Identities=8%  Similarity=-0.048  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHH----HHHHHHHHHHhC--CCHHHHHHHHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRS----SGTSLMAKAAMK--SHAPALYSLAVIQ  140 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~----~A~~~~~~AA~~--G~~~A~~~Lg~~y  140 (348)
                      .++|...|+++.+.  +++.+.+.||.+|. ..++.+    +|+.+|++|.+.  +++.+...||.+|
T Consensus       228 ~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~-~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l  294 (656)
T PRK15174        228 YQEAIQTGESALARGLDGAALRRSLGLAYY-QSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADAL  294 (656)
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence            44455555554443  34455555555544 111111    345555544433  2344444554444

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=96.26  E-value=0.19  Score=52.87  Aligned_cols=108  Identities=8%  Similarity=0.021  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .++|...|+++.+.  +++++++.+|.++. ..++.++|+..|+++.+.  +++.+.+.+|.+|.. .|      ++++|
T Consensus        92 ~~~A~~~l~~~l~~~P~~~~a~~~la~~l~-~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~-~g------~~~eA  163 (656)
T PRK15174         92 PDAVLQVVNKLLAVNVCQPEDVLLVASVLL-KSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVL-MD------KELQA  163 (656)
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-CC------ChHHH
Confidence            77888888887775  68888888888887 567888899999888874  577788888888753 23      66778


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965          157 VALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANA  201 (348)
Q Consensus       157 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~  201 (348)
                      ...|+++...  +++.+.+.++.++..     .+.++|...|+++..
T Consensus       164 ~~~~~~~~~~~P~~~~a~~~~~~l~~~-----g~~~eA~~~~~~~l~  205 (656)
T PRK15174        164 ISLARTQAQEVPPRGDMIATCLSFLNK-----SRLPEDHDLARALLP  205 (656)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHc-----CCHHHHHHHHHHHHh
Confidence            7777766543  456666555444433     245555555554433

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.18  E-value=0.019  Score=41.24  Aligned_cols=63  Identities=21%  Similarity=0.262  Sum_probs=52.6

Q ss_pred             CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965          129 HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANA  201 (348)
Q Consensus       129 ~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~  201 (348)
                      ++...+.+|.+|..       ..|+++|+.+|++|.+.  .++.+.+++|.+|..-.   ++.++|+..|++|.+
T Consensus         2 ~a~~~~~~g~~~~~-------~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~---~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQ-------QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLG---KDYEEAIEDFEKALK   66 (69)
T ss_dssp             SHHHHHHHHHHHHH-------TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTT---THHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC---ccHHHHHHHHHHHHH
Confidence            56788999999975       34899999999999875  57899999999987621   379999999999975

...

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=96.16  E-value=0.091  Score=55.52  Aligned_cols=115  Identities=13%  Similarity=-0.055  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .++|..||+.+.+.  .+..|..+++.+.. -.+-.++|+.+++++....  ++.+++.+|.++.. .|      .+++|
T Consensus       102 ~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~-~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~-~g------~~~~A  173 (694)
T PRK15179        102 SDEGLAVWRGIHQRFPDSSEAFILMLRGVK-RQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDE-IG------QSEQA  173 (694)
T ss_pred             cHHHHHHHHHHHhhCCCcHHHHHHHHHHHH-HhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-hc------chHHH
Confidence            78999999999886  78999999999987 6778999999999998775  88999999988843 44      67999


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHH
Q 018965          157 VALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFFQS  207 (348)
Q Consensus       157 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~~A  207 (348)
                      .+.|+++..+  +++.++..+|..+..    .-+.++|..-|++|.+.--+.+
T Consensus       174 ~~~y~~~~~~~p~~~~~~~~~a~~l~~----~G~~~~A~~~~~~a~~~~~~~~  222 (694)
T PRK15179        174 DACFERLSRQHPEFENGYVGWAQSLTR----RGALWRARDVLQAGLDAIGDGA  222 (694)
T ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhCcch
Confidence            9999999965  468999999998875    3378899999999987765544

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.12  E-value=0.026  Score=55.54  Aligned_cols=81  Identities=12%  Similarity=0.219  Sum_probs=68.3

Q ss_pred             ccCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHHccCCCCCCccCHHHHHHHHHH--HHhCCCHHHHHHHHHHHhccCCC
Q 018965          110 CLQNRSSGTSLMAKAAMKSH--APALYSLAVIQFNGSGGGKNEKDLRAGVALCAR--AASIGHVDAVRELGHCLQDGYGV  185 (348)
Q Consensus       110 ~~~d~~~A~~~~~~AA~~G~--~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~k--AA~~G~~~A~~~Lg~~y~~G~Gv  185 (348)
                      ...|.++|.++|+.|..+..  .+|.|++|.-|.. .|      ++++|+++|.|  +.-..+++-.+.++.+|+.    
T Consensus       502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~-~~------~ldeald~f~klh~il~nn~evl~qianiye~----  570 (840)
T KOG2003|consen  502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEA-LG------NLDEALDCFLKLHAILLNNAEVLVQIANIYEL----  570 (840)
T ss_pred             ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHH-hc------CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----
Confidence            45699999999999998764  6899999988853 33      78999999987  5567999999999999985    


Q ss_pred             CCCHHHHHHHHHHHHh
Q 018965          186 RQNIEKGRRLLIEANA  201 (348)
Q Consensus       186 ~~d~~~A~~w~~~Aa~  201 (348)
                      -.|..+|++||.+|..
T Consensus       571 led~aqaie~~~q~~s  586 (840)
T KOG2003|consen  571 LEDPAQAIELLMQANS  586 (840)
T ss_pred             hhCHHHHHHHHHHhcc
Confidence            5699999999999864

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=96.07  E-value=0.16  Score=54.14  Aligned_cols=119  Identities=12%  Similarity=0.133  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHHHCC-----CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHccCCCCCCccC
Q 018965           81 SDSAHRFLKRCVFAG-----NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS---HAPALYSLAVIQFNGSGGGKNEKD  152 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G-----~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G---~~~A~~~Lg~~y~~G~g~~~~~~d  152 (348)
                      ++.+..+..-+...-     -+++.|.+|.+|. ...|+++|+.||.+|....   +.-+.+.||.||.. .|      |
T Consensus       286 y~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~H-a~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~-~~------d  357 (1018)
T KOG2002|consen  286 YERVWHLAEHAIKNTENKSIKAESFYQLGRSYH-AQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIK-RG------D  357 (1018)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHccCCCCccccccchhHHHHH-hc------h
Confidence            566666666555433     3567999999998 7889999999998887553   36789999999974 23      7


Q ss_pred             HHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHH
Q 018965          153 LRAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFFQS  207 (348)
Q Consensus       153 ~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~~A  207 (348)
                      ++.+...|++..++  ++.+.+.-||.+|..-.-.+.-..+|..++.++-++-+..+
T Consensus       358 le~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~  414 (1018)
T KOG2002|consen  358 LEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDS  414 (1018)
T ss_pred             HHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccH
Confidence            88999999999875  78999999999997642223344566666666666654433

>KOG3612 consensus PHD Zn-finger protein [General function prediction only]

Probab=96.03  E-value=0.0013  Score=65.33  Aligned_cols=44  Identities=27%  Similarity=0.699  Sum_probs=34.6

Q ss_pred             CccccccCCCCCCCCccccccccCCCCCceeecChHHHHHhchhhchhcCCCCC
Q 018965          268 NGLRLCSYSGCGRPETRVHEYRRCSVCGKVNYCSRACQAIDWKTRHKRECVPPL  321 (348)
Q Consensus       268 ~~~~~C~~~~C~~~~~~~~~l~~C~~C~~~~YCs~~CQ~~~W~~~Hk~~C~~~~  321 (348)
                      ....=|.|  |.....     ..|  |-.+.|||.+||+.||+. |+..|+.-+
T Consensus       525 KkKQWC~n--C~~EAi-----y~C--CWNTSYCsveCQQ~HW~~-H~ksCrrk~  568 (588)
T KOG3612|consen  525 KKKQWCYN--CLDEAI-----YHC--CWNTSYCSVECQQGHWPE-HRKSCRRKK  568 (588)
T ss_pred             HHHHHHHh--hhHHHH-----HHh--hccccccCcchhhccchh-HhhhhcccC
Confidence            44456886  766544     445  889999999999999995 999998765

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=95.98  E-value=0.13  Score=42.01  Aligned_cols=93  Identities=23%  Similarity=0.150  Sum_probs=65.2

Q ss_pred             HHHHHHhhhhhhhccCCHHHHHHHHHHHHhCCCH-----HHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--C--
Q 018965           97 LEACYTLGMIRFYCLQNRSSGTSLMAKAAMKSHA-----PALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--G--  167 (348)
Q Consensus        97 ~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G~~-----~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G--  167 (348)
                      |++.|.++.++- .-++.++|+.+|++|.+.|-.     .+...||..|.+ .|      .+++|+.+|+++.+.  +  
T Consensus         1 ~~~~~~~A~a~d-~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~-LG------~~deA~~~L~~~~~~~p~~~   72 (120)
T PF12688_consen    1 PRALYELAWAHD-SLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRN-LG------RYDEALALLEEALEEFPDDE   72 (120)
T ss_pred             CchHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHHHCCCcc
Confidence            356788888776 566788899999998888733     466677777753 44      678888888888765  2  


Q ss_pred             -CHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965          168 -HVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANA  201 (348)
Q Consensus       168 -~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~  201 (348)
                       +......++..+.+    ....++|+.|+..+..
T Consensus        73 ~~~~l~~f~Al~L~~----~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   73 LNAALRVFLALALYN----LGRPKEALEWLLEALA  103 (120)
T ss_pred             ccHHHHHHHHHHHHH----CCCHHHHHHHHHHHHH
Confidence             44555666665443    3366788888887765

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=95.94  E-value=0.12  Score=48.20  Aligned_cols=97  Identities=14%  Similarity=0.178  Sum_probs=77.3

Q ss_pred             CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--C---HHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC---
Q 018965           95 GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--H---APALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI---  166 (348)
Q Consensus        95 G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~---~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~---  166 (348)
                      ++..+.|..+.-++...+++.+|+.-|++..+.-  +   +.|+|.||.+|+.       ..|+.+|+..|++..+.   
T Consensus       140 ~~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~-------~g~~~~A~~~f~~vv~~yP~  212 (263)
T PRK10803        140 GDANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN-------KGKKDDAAYYFASVVKNYPK  212 (263)
T ss_pred             CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHHCCC
Confidence            4456777777755324578999999999988752  2   5799999999974       34899999999999963   


Q ss_pred             --CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          167 --GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       167 --G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                        -.++|++.+|.+|..    ..|..+|...|++..+.
T Consensus       213 s~~~~dAl~klg~~~~~----~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        213 SPKAADAMFKVGVIMQD----KGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             CcchhHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence              368999999999975    35999999999988764

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=95.83  E-value=0.032  Score=39.66  Aligned_cols=56  Identities=18%  Similarity=0.251  Sum_probs=37.1

Q ss_pred             HhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHh
Q 018965          102 TLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAAS  165 (348)
Q Consensus       102 ~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~  165 (348)
                      .+|..++ ..+++++|+..|+++.+..  ++.+.+.||.++.. .|      ++++|+.+|+++.+
T Consensus         2 ~~a~~~~-~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~-~g------~~~~A~~~~~~a~~   59 (65)
T PF13432_consen    2 ALARALY-QQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQ-QG------RYDEALAYYERALE   59 (65)
T ss_dssp             HHHHHHH-HCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH-TT-------HHHHHHHHHHHHH
T ss_pred             hHHHHHH-HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHH
Confidence            4555555 5667777777777777665  66777777777762 23      66777777777754

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=95.77  E-value=0.19  Score=53.86  Aligned_cols=108  Identities=11%  Similarity=-0.006  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .++|...|+++.+.  +++++.+.|+.++. ..++..+|+..++++.+.  .++. .+.||.+|.. .|      +..+|
T Consensus        65 ~~~A~~~~~~al~~~P~~~~a~~~la~~l~-~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~-~g------~~~~A  135 (765)
T PRK10049         65 WQNSLTLWQKALSLEPQNDDYQRGLILTLA-DAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKR-AG------RHWDE  135 (765)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH-CC------CHHHH
Confidence            67999999998765  68999999999887 678899999999998875  3677 8899988863 23      78999


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965          157 VALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANA  201 (348)
Q Consensus       157 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~  201 (348)
                      +..|+++.+.  +++.+.+.++.++..+    ...++|+..++++..
T Consensus       136 l~~l~~al~~~P~~~~~~~~la~~l~~~----~~~e~Al~~l~~~~~  178 (765)
T PRK10049        136 LRAMTQALPRAPQTQQYPTEYVQALRNN----RLSAPALGAIDDANL  178 (765)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHC----CChHHHHHHHHhCCC
Confidence            9999999875  6889999999988864    566789988887775

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=95.73  E-value=0.23  Score=54.58  Aligned_cols=119  Identities=17%  Similarity=0.137  Sum_probs=87.1

Q ss_pred             cHHHHHHHHHHHHHCC--CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           80 WSDSAHRFLKRCVFAG--NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS-HAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~G--~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G-~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      ..++|..+|+++.+..  +....+.++.... ..++.++|+.+|++|.+.. ++.+.+++|.++.. .|      ++++|
T Consensus       557 d~~eA~~~l~qAL~l~P~~~~l~~~La~~l~-~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~-lG------~~deA  628 (987)
T PRK09782        557 NGAARDRWLQQAEQRGLGDNALYWWLHAQRY-IPGQPELALNDLTRSLNIAPSANAYVARATIYRQ-RH------NVPAA  628 (987)
T ss_pred             CHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-CC------CHHHH
Confidence            3677888888877653  2222222222221 3478999999999998753 47888999988864 33      78999


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC--CHHHHHh
Q 018965          157 VALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE--FFQSVSK  210 (348)
Q Consensus       157 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G--~~~A~~~  210 (348)
                      ..+|++|.+.  +++.+.++||.++..    ..+.++|+..|++|.+..  ++.+..+
T Consensus       629 ~~~l~~AL~l~Pd~~~a~~nLG~aL~~----~G~~eeAi~~l~~AL~l~P~~~~a~~n  682 (987)
T PRK09782        629 VSDLRAALELEPNNSNYQAALGYALWD----SGDIAQSREMLERAHKGLPDDPALIRQ  682 (987)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            9999999876  689999999988876    358899999999998764  5555554

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=95.71  E-value=0.13  Score=48.29  Aligned_cols=109  Identities=15%  Similarity=0.120  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHC----CCH----HHHHHhhhhhhhccCCHHHHHHHHHHHHh----CCCH----HHHHHHHHHHHccCC
Q 018965           82 DSAHRFLKRCVFA----GNL----EACYTLGMIRFYCLQNRSSGTSLMAKAAM----KSHA----PALYSLAVIQFNGSG  145 (348)
Q Consensus        82 ~~A~~~~~kaA~~----G~~----~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~----~G~~----~A~~~Lg~~y~~G~g  145 (348)
                      ++|...|.+|++.    |++    .+....+.+|.  ..|+.+|+.+|++|.+    .|.+    ..+..+|.+|....|
T Consensus        52 ~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k--~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~  129 (282)
T PF14938_consen   52 EKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYK--KGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLG  129 (282)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT-
T ss_pred             chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcC
Confidence            4556666666542    332    23344444444  3499999999999985    5664    477899999965323


Q ss_pred             CCCCccCHHHHHHHHHHHHhC----CCH----HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          146 GGKNEKDLRAGVALCARAASI----GHV----DAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       146 ~~~~~~d~~~A~~~~~kAA~~----G~~----~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                            |+++|+++|++|++.    |..    .....++.++..    ..++.+|+..|++.+..
T Consensus       130 ------d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~----l~~y~~A~~~~e~~~~~  184 (282)
T PF14938_consen  130 ------DYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR----LGRYEEAIEIYEEVAKK  184 (282)
T ss_dssp             -------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHT
T ss_pred             ------CHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHH
Confidence                  899999999999984    432    244566666654    23999999999998864

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=95.68  E-value=0.093  Score=49.19  Aligned_cols=98  Identities=15%  Similarity=0.108  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHccCCCCCCccC
Q 018965           81 SDSAHRFLKRCVFAGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK----SH----APALYSLAVIQFNGSGGGKNEKD  152 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~----G~----~~A~~~Lg~~y~~G~g~~~~~~d  152 (348)
                      .+.|...|.+|+.            .|. ..++..+|.+.|.+|++.    |+    ..+....+.+|..        .|
T Consensus        31 ~e~Aa~~y~~Aa~------------~fk-~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~--------~~   89 (282)
T PF14938_consen   31 YEEAADLYEKAAN------------CFK-LAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK--------GD   89 (282)
T ss_dssp             HHHHHHHHHHHHH------------HHH-HTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--------TT
T ss_pred             HHHHHHHHHHHHH------------HHH-HHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--------hC
Confidence            6889999999863            333 456777888888888743    33    2344556667743        37


Q ss_pred             HHHHHHHHHHHHh----CCCH----HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          153 LRAGVALCARAAS----IGHV----DAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       153 ~~~A~~~~~kAA~----~G~~----~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                      +.+|+.+|++|.+    .|.+    ..+.++|.+|+.-.   .|+++|+.+|++|++.
T Consensus        90 ~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~---~d~e~Ai~~Y~~A~~~  144 (282)
T PF14938_consen   90 PDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQL---GDYEKAIEYYQKAAEL  144 (282)
T ss_dssp             HHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT-----HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHH
Confidence            8899999999987    5764    46788999998732   5999999999999874

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=95.68  E-value=0.27  Score=43.64  Aligned_cols=83  Identities=17%  Similarity=0.139  Sum_probs=67.9

Q ss_pred             cHHHHHHHHHHHHHC--CCHHHHHHhhhhh-h-hccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCH
Q 018965           80 WSDSAHRFLKRCVFA--GNLEACYTLGMIR-F-YCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDL  153 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~--G~~~A~~~Lg~~y-~-~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~  153 (348)
                      ..++|+..|++|...  .|++..+.+|.++ . ....+..+|...|+++.+..  ++.+.+.||..+.. .|      |+
T Consensus        88 ~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~-~g------~~  160 (198)
T PRK10370         88 DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFM-QA------DY  160 (198)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHH-cC------CH
Confidence            378999999999885  5899999999864 4 22334699999999999875  78999999999974 34      89


Q ss_pred             HHHHHHHHHHHhCCCH
Q 018965          154 RAGVALCARAASIGHV  169 (348)
Q Consensus       154 ~~A~~~~~kAA~~G~~  169 (348)
                      ++|+.+|+++.+...+
T Consensus       161 ~~Ai~~~~~aL~l~~~  176 (198)
T PRK10370        161 AQAIELWQKVLDLNSP  176 (198)
T ss_pred             HHHHHHHHHHHhhCCC
Confidence            9999999999886544

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=95.65  E-value=0.18  Score=45.74  Aligned_cols=114  Identities=14%  Similarity=0.100  Sum_probs=87.3

Q ss_pred             cCcHHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCH
Q 018965           78 KNWSDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDL  153 (348)
Q Consensus        78 ~~~~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~  153 (348)
                      ......|..-+++|.+.  .+..|+..++.+|. ..++.+.|.+.|++|...  ++.+-..|+|.++- +.|      -+
T Consensus        48 ~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq-~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC-~qg------~~  119 (250)
T COG3063          48 QGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQ-KLGENDLADESYRKALSLAPNNGDVLNNYGAFLC-AQG------RP  119 (250)
T ss_pred             CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH-hCC------Ch
Confidence            33478888889998775  57788888888887 567788899999999865  46777888887663 233      47


Q ss_pred             HHHHHHHHHHHhCC----CHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965          154 RAGVALCARAASIG----HVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE  203 (348)
Q Consensus       154 ~~A~~~~~kAA~~G----~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G  203 (348)
                      ++|..||++|.+.-    .++..-|+|.|-..    ..+...|..+|++|.+..
T Consensus       120 ~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~----~gq~~~A~~~l~raL~~d  169 (250)
T COG3063         120 EEAMQQFERALADPAYGEPSDTLENLGLCALK----AGQFDQAEEYLKRALELD  169 (250)
T ss_pred             HHHHHHHHHHHhCCCCCCcchhhhhhHHHHhh----cCCchhHHHHHHHHHHhC
Confidence            89999999999863    35677788887664    447788999999997654

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=95.64  E-value=0.033  Score=41.13  Aligned_cols=60  Identities=18%  Similarity=0.154  Sum_probs=40.3

Q ss_pred             HHHHHhhhhhhhccCCHHHHHHHHHHHHhC----C-----CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHh
Q 018965           98 EACYTLGMIRFYCLQNRSSGTSLMAKAAMK----S-----HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAAS  165 (348)
Q Consensus        98 ~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~----G-----~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~  165 (348)
                      .++++||.+|. ..++.++|+.+|++|.+.    |     .+.+.++||.+|.. .|      |+++|+++|++|.+
T Consensus         6 ~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~-~g------~~~~A~~~~~~al~   74 (78)
T PF13424_consen    6 NAYNNLARVYR-ELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR-LG------DYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-TT------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHh
Confidence            46778888887 677888888888888733    2     13466677777743 23      67777777777653

...

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=95.61  E-value=0.1  Score=44.61  Aligned_cols=79  Identities=11%  Similarity=0.065  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .+.|..+|+-....  -+++..|+||.++- ..+++.+|+..|.+|...  .+|.+.+++|.+|+.. |      |...|
T Consensus        51 l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q-~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~l-G------~~~~A  122 (157)
T PRK15363         51 FAGAARLFQLLTIYDAWSFDYWFRLGECCQ-AQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLAC-D------NVCYA  122 (157)
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc-C------CHHHH
Confidence            78888888887665  57888999999987 788999999999999976  4899999999999853 3      67888


Q ss_pred             HHHHHHHHhCC
Q 018965          157 VALCARAASIG  167 (348)
Q Consensus       157 ~~~~~kAA~~G  167 (348)
                      .+-|+.|.+..
T Consensus       123 ~~aF~~Ai~~~  133 (157)
T PRK15363        123 IKALKAVVRIC  133 (157)
T ss_pred             HHHHHHHHHHh
Confidence            88888887653

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=95.56  E-value=0.39  Score=43.14  Aligned_cols=117  Identities=9%  Similarity=0.003  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHHC--CCH---HHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CH---HHHHHHHHHHHccCCC-CCC
Q 018965           81 SDSAHRFLKRCVFA--GNL---EACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HA---PALYSLAVIQFNGSGG-GKN  149 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~---~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~---~A~~~Lg~~y~~G~g~-~~~  149 (348)
                      .++|...|+++...  .++   ++.+.+|.+|+ ..+++++|+..|+++.+..  ++   .+.|.+|.+|..-.+. ...
T Consensus        49 ~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~  127 (235)
T TIGR03302        49 YTEAIKYFEALESRYPFSPYAEQAQLDLAYAYY-KSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRD  127 (235)
T ss_pred             HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCC
Confidence            67899999988775  333   68899999998 6789999999999998753  23   3799999999753210 002


Q ss_pred             ccCHHHHHHHHHHHHhC--CCHH---HH--------------HHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          150 EKDLRAGVALCARAASI--GHVD---AV--------------RELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       150 ~~d~~~A~~~~~kAA~~--G~~~---A~--------------~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                      ..+..+|.+.|.++.+.  .+..   +.              +.+|.+|..    ..+..+|+.+|+++.+.
T Consensus       128 ~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~  195 (235)
T TIGR03302       128 QTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLK----RGAYVAAINRFETVVEN  195 (235)
T ss_pred             HHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHH
Confidence            35688999999999864  2322   22              345555543    45888999999998876

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=95.54  E-value=0.13  Score=44.11  Aligned_cols=60  Identities=17%  Similarity=0.108  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHHCC-----CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHH
Q 018965           81 SDSAHRFLKRCVFAG-----NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQF  141 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G-----~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~  141 (348)
                      .++|+.+|+++....     .+.+.++||.+|. ..++.++|+..|++|...  .+..+.+++|.+|.
T Consensus        51 ~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~-~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~  117 (168)
T CHL00033         51 YAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT-SNGEHTKALEYYFQALERNPFLPQALNNMAVICH  117 (168)
T ss_pred             HHHHHHHHHHHHhccccchhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence            789999999997652     2358999999998 678899999999999864  46778889998886

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=95.49  E-value=0.049  Score=40.14  Aligned_cols=61  Identities=20%  Similarity=0.282  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHh----CCC-----HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Q 018965          130 APALYSLAVIQFNGSGGGKNEKDLRAGVALCARAAS----IGH-----VDAVRELGHCLQDGYGVRQNIEKGRRLLIEAN  200 (348)
Q Consensus       130 ~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~----~G~-----~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa  200 (348)
                      +.++++||.+|. ..|      ++++|+.+|++|.+    .|+     +.+.++||.+|..    ..|+++|+.+|++|.
T Consensus         5 a~~~~~la~~~~-~~~------~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~----~g~~~~A~~~~~~al   73 (78)
T PF13424_consen    5 ANAYNNLARVYR-ELG------RYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR----LGDYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHHH-HTT-------HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH----TTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HcC------CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Confidence            357789999997 344      89999999999975    342     4577889998876    568999999999996


Q ss_pred             h
Q 018965          201 A  201 (348)
Q Consensus       201 ~  201 (348)
                      +
T Consensus        74 ~   74 (78)
T PF13424_consen   74 D   74 (78)
T ss_dssp             H
T ss_pred             h
Confidence            4

...

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=95.44  E-value=0.062  Score=40.39  Aligned_cols=75  Identities=15%  Similarity=0.133  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHCCC----HHHHHHhhhhhhhccCCHHHHHHHHHHH-HhCCCHHHHHHHHHHHHccCCCCCCccCHHH
Q 018965           81 SDSAHRFLKRCVFAGN----LEACYTLGMIRFYCLQNRSSGTSLMAKA-AMKSHAPALYSLAVIQFNGSGGGKNEKDLRA  155 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G~----~~A~~~Lg~~y~~~~~d~~~A~~~~~~A-A~~G~~~A~~~Lg~~y~~G~g~~~~~~d~~~  155 (348)
                      .++|+.+|++..+...    ....+.||.+|+ ..++..+|+.++++. ....++...+.+|.+|..       -.++++
T Consensus         5 y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~-~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~-------l~~y~e   76 (84)
T PF12895_consen    5 YENAIKYYEKLLELDPTNPNSAYLYNLAQCYF-QQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLK-------LGKYEE   76 (84)
T ss_dssp             HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHH-HTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHH-------TT-HHH
T ss_pred             HHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH-HCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-------hCCHHH
Confidence            5667777777666543    344555577776 566777777777662 122345677777777653       225677


Q ss_pred             HHHHHHHH
Q 018965          156 GVALCARA  163 (348)
Q Consensus       156 A~~~~~kA  163 (348)
                      |+..|++|
T Consensus        77 Ai~~l~~~   84 (84)
T PF12895_consen   77 AIKALEKA   84 (84)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhcC
Confidence            77777664

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=95.43  E-value=0.19  Score=41.97  Aligned_cols=91  Identities=15%  Similarity=0.134  Sum_probs=69.1

Q ss_pred             HHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC-C----HHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhCC-CHH
Q 018965           97 LEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS-H----APALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASIG-HVD  170 (348)
Q Consensus        97 ~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G-~----~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~G-~~~  170 (348)
                      ..|.+.+|.+++ ..+++++|...|+.+.+.. +    +.|.+.|+.++..       ..++++|+..+....... .+.
T Consensus        48 ~~A~l~lA~~~~-~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~-------~~~~d~Al~~L~~~~~~~~~~~  119 (145)
T PF09976_consen   48 ALAALQLAKAAY-EQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQ-------QGQYDEALATLQQIPDEAFKAL  119 (145)
T ss_pred             HHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH-------cCCHHHHHHHHHhccCcchHHH
Confidence            356777777777 6789999999999999886 2    3478888888863       337899999997754433 355


Q ss_pred             HHHHHHHHHhccCCCCCCHHHHHHHHHHH
Q 018965          171 AVRELGHCLQDGYGVRQNIEKGRRLLIEA  199 (348)
Q Consensus       171 A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~A  199 (348)
                      +...+|.+|..    ..|.++|+.-|++|
T Consensus       120 ~~~~~Gdi~~~----~g~~~~A~~~y~~A  144 (145)
T PF09976_consen  120 AAELLGDIYLA----QGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHHHHHHH----CCCHHHHHHHHHHh
Confidence            67778888875    55899999999887

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=95.42  E-value=0.081  Score=39.77  Aligned_cols=77  Identities=19%  Similarity=0.210  Sum_probs=59.0

Q ss_pred             CCHHHHHHHHHHHHhCCC----HHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHH-HhCCCHHHHHHHHHHHhccCCCC
Q 018965          112 QNRSSGTSLMAKAAMKSH----APALYSLAVIQFNGSGGGKNEKDLRAGVALCARA-ASIGHVDAVRELGHCLQDGYGVR  186 (348)
Q Consensus       112 ~d~~~A~~~~~~AA~~G~----~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kA-A~~G~~~A~~~Lg~~y~~G~Gv~  186 (348)
                      .+++.|+.+|++..+...    ....+.||.+|+.       ..++.+|+.++++. .+..++...+.+|.+|..    -
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~-------~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~----l   71 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ-------QGKYEEAIELLQKLKLDPSNPDIHYLLARCLLK----L   71 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH-------TTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHH----T
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH-------CCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----h
Confidence            578899999999987764    3466677999975       23789999999883 123567899999998875    5


Q ss_pred             CCHHHHHHHHHHH
Q 018965          187 QNIEKGRRLLIEA  199 (348)
Q Consensus       187 ~d~~~A~~w~~~A  199 (348)
                      .++++|+..|++|
T Consensus        72 ~~y~eAi~~l~~~   84 (84)
T PF12895_consen   72 GKYEEAIKALEKA   84 (84)
T ss_dssp             T-HHHHHHHHHHH
T ss_pred             CCHHHHHHHHhcC
Confidence            6899999999876

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=95.36  E-value=0.9  Score=41.25  Aligned_cols=116  Identities=15%  Similarity=0.122  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC----CHHHHHHHHHHHHccCCCCCCccCHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS----HAPALYSLAVIQFNGSGGGKNEKDLR  154 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G----~~~A~~~Lg~~y~~G~g~~~~~~d~~  154 (348)
                      .+.|.+.|++|...  +|.+-..+.|-++- ..+.+++|..||++|.+.=    .+...-|+|.|-+.- |      +..
T Consensus        85 ~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC-~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~-g------q~~  156 (250)
T COG3063          85 NDLADESYRKALSLAPNNGDVLNNYGAFLC-AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKA-G------QFD  156 (250)
T ss_pred             hhhHHHHHHHHHhcCCCccchhhhhhHHHH-hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhc-C------Cch
Confidence            78999999999875  67788899998876 4458999999999999874    356777999998642 2      467


Q ss_pred             HHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 018965          155 AGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFFQSV  208 (348)
Q Consensus       155 ~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~~A~  208 (348)
                      +|.++|+++-+.  .++.+...++.+...    +.|+..|..++++-...|...|-
T Consensus       157 ~A~~~l~raL~~dp~~~~~~l~~a~~~~~----~~~y~~Ar~~~~~~~~~~~~~A~  208 (250)
T COG3063         157 QAEEYLKRALELDPQFPPALLELARLHYK----AGDYAPARLYLERYQQRGGAQAE  208 (250)
T ss_pred             hHHHHHHHHHHhCcCCChHHHHHHHHHHh----cccchHHHHHHHHHHhcccccHH
Confidence            889999998775  467777777765443    45777788887777777774443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=95.33  E-value=0.89  Score=48.79  Aligned_cols=110  Identities=10%  Similarity=0.016  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHH--CCCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVF--AGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~--~G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .++|+..|.++..  ..++.+...+|.++. ..++..+|+..|+++.+.  +++.+.+.|+.++.. .      .++.+|
T Consensus        31 ~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~-~------g~~~eA  102 (765)
T PRK10049         31 DAEVITVYNRYRVHMQLPARGYAAVAVAYR-NLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLAD-A------GQYDEA  102 (765)
T ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-C------CCHHHH
Confidence            5677778888774  234445788888877 567788888888887655  567888888887753 2      267888


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965          157 VALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE  203 (348)
Q Consensus       157 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G  203 (348)
                      +..++++.+.  .++. .+.||.+|..    ..+.++|+..|+++.+..
T Consensus       103 ~~~l~~~l~~~P~~~~-~~~la~~l~~----~g~~~~Al~~l~~al~~~  146 (765)
T PRK10049        103 LVKAKQLVSGAPDKAN-LLALAYVYKR----AGRHWDELRAMTQALPRA  146 (765)
T ss_pred             HHHHHHHHHhCCCCHH-HHHHHHHHHH----CCCHHHHHHHHHHHHHhC
Confidence            8888888764  4666 7788887764    457788888888776643

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=95.27  E-value=0.62  Score=44.34  Aligned_cols=116  Identities=15%  Similarity=0.035  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHCCC--HHHHHHhhhhhhhccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcc---CCCCCCccCHHH
Q 018965           81 SDSAHRFLKRCVFAGN--LEACYTLGMIRFYCLQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNG---SGGGKNEKDLRA  155 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G~--~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G~~~A~~~Lg~~y~~G---~g~~~~~~d~~~  155 (348)
                      .+.|-..|....+.|.  ..|.-.|-.+|. ..++.+||++--++-...|.-.=...++.+|-.=   .-   ...|.++
T Consensus       123 ~DRAE~~f~~L~de~efa~~AlqqLl~IYQ-~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~---~~~~~d~  198 (389)
T COG2956         123 LDRAEDIFNQLVDEGEFAEGALQQLLNIYQ-ATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL---ASSDVDR  198 (389)
T ss_pred             hhHHHHHHHHHhcchhhhHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh---hhhhHHH
Confidence            5556666666555443  345555555554 4555555555555444444333333333333110   01   2334555


Q ss_pred             HHHHHHHHHh--CCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCC
Q 018965          156 GVALCARAAS--IGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREF  204 (348)
Q Consensus       156 A~~~~~kAA~--~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~  204 (348)
                      |+.|+.||..  ..++.|-..||.++..    ..|+++|++-|+...+|..
T Consensus       199 A~~~l~kAlqa~~~cvRAsi~lG~v~~~----~g~y~~AV~~~e~v~eQn~  245 (389)
T COG2956         199 ARELLKKALQADKKCVRASIILGRVELA----KGDYQKAVEALERVLEQNP  245 (389)
T ss_pred             HHHHHHHHHhhCccceehhhhhhHHHHh----ccchHHHHHHHHHHHHhCh
Confidence            5555555543  2345555555555442    2355555555555544443

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=95.22  E-value=0.088  Score=37.28  Aligned_cols=58  Identities=19%  Similarity=0.197  Sum_probs=47.1

Q ss_pred             HHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          134 YSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       134 ~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                      |.+|..|..       ..|+++|...|+++.+.  +++++.+.||.++..    ..++++|+.+|+++.+.
T Consensus         1 ~~~a~~~~~-------~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~----~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    1 YALARALYQ-------QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQ----QGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHHHH-------CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHH
T ss_pred             ChHHHHHHH-------cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence            456666653       23899999999999987  489999999999985    56999999999999754

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.17  E-value=0.11  Score=52.41  Aligned_cols=107  Identities=14%  Similarity=0.101  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHH-CC---CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           83 SAHRFLKRCVF-AG---NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        83 ~A~~~~~kaA~-~G---~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      ...++|..++. .+   +|+-|.-||.+|. ..+++++|+..|+.|-.-.  +..-...||-.+.+|.-       ..+|
T Consensus       412 ~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~-ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~-------s~EA  483 (579)
T KOG1125|consen  412 HIQELFLEAARQLPTKIDPDVQSGLGVLYN-LSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNR-------SEEA  483 (579)
T ss_pred             HHHHHHHHHHHhCCCCCChhHHhhhHHHHh-cchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcc-------cHHH
Confidence            33445555554 44   6899999999987 8899999999999998654  66778899999988865       4889


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965          157 VALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANA  201 (348)
Q Consensus       157 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~  201 (348)
                      +.-|++|-+.  |++.+-|+||+.|-+    -..+++|.++|..|..
T Consensus       484 IsAY~rALqLqP~yVR~RyNlgIS~mN----lG~ykEA~~hlL~AL~  526 (579)
T KOG1125|consen  484 ISAYNRALQLQPGYVRVRYNLGISCMN----LGAYKEAVKHLLEALS  526 (579)
T ss_pred             HHHHHHHHhcCCCeeeeehhhhhhhhh----hhhHHHHHHHHHHHHH
Confidence            9999999986  899999999998876    4478899999988864

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=95.12  E-value=1.1  Score=48.21  Aligned_cols=110  Identities=15%  Similarity=0.151  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHH--CCCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHccCCCCCCccCH
Q 018965           81 SDSAHRFLKRCVF--AGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS-----HAPALYSLAVIQFNGSGGGKNEKDL  153 (348)
Q Consensus        81 ~~~A~~~~~kaA~--~G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G-----~~~A~~~Lg~~y~~G~g~~~~~~d~  153 (348)
                      ..+++..+.+|-.  ..||.+...|+..|+ ..+|+..+..+..-|...-     -+++.|++|.+|. -.|      |+
T Consensus       252 ~~~~~~ll~~ay~~n~~nP~~l~~LAn~fy-fK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~H-a~G------d~  323 (1018)
T KOG2002|consen  252 YKKGVQLLQRAYKENNENPVALNHLANHFY-FKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYH-AQG------DF  323 (1018)
T ss_pred             HHHHHHHHHHHHhhcCCCcHHHHHHHHHHh-hcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-hhc------cH
Confidence            4556666666544  246666666666665 5667777777666665543     2345677777763 234      77


Q ss_pred             HHHHHHHHHHHhC---CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          154 RAGVALCARAASI---GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       154 ~~A~~~~~kAA~~---G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                      ++|+.||..|...   ++.-+.+-||.+|..    .-|++.|...|++-..+
T Consensus       324 ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~----~~dle~s~~~fEkv~k~  371 (1018)
T KOG2002|consen  324 EKAFKYYMESLKADNDNFVLPLVGLGQMYIK----RGDLEESKFCFEKVLKQ  371 (1018)
T ss_pred             HHHHHHHHHHHccCCCCccccccchhHHHHH----hchHHHHHHHHHHHHHh
Confidence            7777777766543   235666777776654    44677777777776554

>PRK11906 transcriptional regulator; Provisional

Probab=95.06  E-value=0.78  Score=45.72  Aligned_cols=131  Identities=11%  Similarity=-0.045  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHH---H--CCCHHHHHHhhhhhh--------hccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCC
Q 018965           81 SDSAHRFLKRCV---F--AGNLEACYTLGMIRF--------YCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSG  145 (348)
Q Consensus        81 ~~~A~~~~~kaA---~--~G~~~A~~~Lg~~y~--------~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g  145 (348)
                      .+.|+.+|.+|.   +  -+.+.|+-.|+..++        ..+.+..+|...-++|.+.+  ++.|.+.+|..+..   
T Consensus       274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~---  350 (458)
T PRK11906        274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGL---  350 (458)
T ss_pred             HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh---
Confidence            678999999999   3  346888888888876        23557889999999999876  78888899987643   


Q ss_pred             CCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHhhhhhhhhhhhhh
Q 018965          146 GGKNEKDLRAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFFQSVSKTRTRHQSYYFQL  222 (348)
Q Consensus       146 ~~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~~A~~~~~~~~~~~~~~~  222 (348)
                          ..+...|..||++|-..  ..+.+.|.+|.+...    .-+.++|..+.++|....--..-....+-|...+...
T Consensus       351 ----~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~----~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~  421 (458)
T PRK11906        351 ----SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH----NEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN  421 (458)
T ss_pred             ----hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC
Confidence                22478999999999987  467888888875432    3378999999999998877666655556676444333

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=95.01  E-value=0.27  Score=44.15  Aligned_cols=100  Identities=13%  Similarity=0.038  Sum_probs=76.3

Q ss_pred             CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CH---HHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhCC--
Q 018965           95 GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HA---PALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASIG--  167 (348)
Q Consensus        95 G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~---~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~G--  167 (348)
                      ..++..|.+|..++ ..++++.|+..|+++....  ++   .+.+.+|.+|..       ..++.+|+..|+++.+..  
T Consensus        31 ~~~~~~~~~g~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~-------~~~~~~A~~~~~~~l~~~p~  102 (235)
T TIGR03302        31 WPAEELYEEAKEAL-DSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYK-------SGDYAEAIAAADRFIRLHPN  102 (235)
T ss_pred             CCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh-------cCCHHHHHHHHHHHHHHCcC
Confidence            45667788888887 5788999999999987753  33   688999999974       347899999999998752  


Q ss_pred             CH---HHHHHHHHHHhccCC----CCCCHHHHHHHHHHHHhc
Q 018965          168 HV---DAVRELGHCLQDGYG----VRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       168 ~~---~A~~~Lg~~y~~G~G----v~~d~~~A~~w~~~Aa~~  202 (348)
                      ++   .+.+.+|.+|..-.+    ...+.++|+..|+++...
T Consensus       103 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  144 (235)
T TIGR03302       103 HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR  144 (235)
T ss_pred             CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence            33   479999999875321    225688899999998764

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=94.95  E-value=0.049  Score=34.74  Aligned_cols=38  Identities=32%  Similarity=0.497  Sum_probs=32.2

Q ss_pred             CChHHHHHHHHHhhcCCCCHHHHHHHHHHhHHHHhccCCchhh
Q 018965           23 LPDDLLECVLSKLISSAPSPSDFINVLLTCKRLNRVGLRPTVL   65 (348)
Q Consensus        23 l~~d~l~~il~~~a~~~~s~~d~~~~~l~~k~~~~~~~~~~~l   65 (348)
                      ||+|++..|+..+     ++.|+.++..+|+.|+.....+..+
T Consensus         1 lP~~ll~~I~~~l-----~~~d~~~~~~vc~~~~~~~~~~~~~   38 (41)
T smart00256        1 LPDEILEEILSKL-----PPKDLLRLRKVSRRWRSLIDSHDFW   38 (41)
T ss_pred             CCHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHhcChhhh
Confidence            7999999999877     4579999999999999988765543

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=94.91  E-value=0.28  Score=38.45  Aligned_cols=80  Identities=14%  Similarity=0.018  Sum_probs=64.9

Q ss_pred             cHHHHHHHHHHHHHCC--C---HHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--C---CHHHHHHHHHHHHccCCCCCC
Q 018965           80 WSDSAHRFLKRCVFAG--N---LEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--S---HAPALYSLAVIQFNGSGGGKN  149 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~G--~---~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G---~~~A~~~Lg~~y~~G~g~~~~  149 (348)
                      ..++|...|.++....  +   +.+.+.+|.+++ ..+++..|+.+|+++...  +   .+.+.+.+|.+|.. .     
T Consensus        17 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~-----   89 (119)
T TIGR02795        17 DYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYY-AQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQE-L-----   89 (119)
T ss_pred             CHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHH-h-----
Confidence            3788999999988743  2   579999999998 677899999999999864  2   36789999999964 3     


Q ss_pred             ccCHHHHHHHHHHHHhCC
Q 018965          150 EKDLRAGVALCARAASIG  167 (348)
Q Consensus       150 ~~d~~~A~~~~~kAA~~G  167 (348)
                       .+..+|..+|.++.+..
T Consensus        90 -~~~~~A~~~~~~~~~~~  106 (119)
T TIGR02795        90 -GDKEKAKATLQQVIKRY  106 (119)
T ss_pred             -CChHHHHHHHHHHHHHC
Confidence             37899999999987763

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.69  E-value=0.42  Score=45.55  Aligned_cols=108  Identities=20%  Similarity=0.228  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHCC--CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHccCCCCCCccCH
Q 018965           81 SDSAHRFLKRCVFAG--NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS-----HAPALYSLAVIQFNGSGGGKNEKDL  153 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G--~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G-----~~~A~~~Lg~~y~~G~g~~~~~~d~  153 (348)
                      +|.|+.||++--..|  +|+-..++|++.+ ..+..+.++--|++|-..-     -++-.|+||.+. -+.|      |.
T Consensus       340 PE~AlryYRRiLqmG~~speLf~NigLCC~-yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~va-V~iG------D~  411 (478)
T KOG1129|consen  340 PEMALRYYRRILQMGAQSPELFCNIGLCCL-YAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVA-VTIG------DF  411 (478)
T ss_pred             hHHHHHHHHHHHHhcCCChHHHhhHHHHHH-hhcchhhhHHHHHHHHhhccCcchhhhhhhccceeE-Eecc------ch
Confidence            566666666666665  5666666666655 2344444555555554322     234566666554 3344      66


Q ss_pred             HHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Q 018965          154 RAGVALCARAAS--IGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEAN  200 (348)
Q Consensus       154 ~~A~~~~~kAA~--~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa  200 (348)
                      .-|.+.|+.|-.  ..|.+|..+||.+-..    +-|+..|+.+|..|-
T Consensus       412 nlA~rcfrlaL~~d~~h~ealnNLavL~~r----~G~i~~Arsll~~A~  456 (478)
T KOG1129|consen  412 NLAKRCFRLALTSDAQHGEALNNLAVLAAR----SGDILGARSLLNAAK  456 (478)
T ss_pred             HHHHHHHHHHhccCcchHHHHHhHHHHHhh----cCchHHHHHHHHHhh
Confidence            777777777654  3567777777776543    336677777776554

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=94.52  E-value=1.1  Score=46.00  Aligned_cols=113  Identities=10%  Similarity=-0.036  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhh---h-cc---CCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHccCCCC
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRF---Y-CL---QNRSSGTSLMAKAAM----KSHAPALYSLAVIQFNGSGGG  147 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~---~-~~---~d~~~A~~~~~~AA~----~G~~~A~~~Lg~~y~~G~g~~  147 (348)
                      ..+|..+|++|.+.  +++.|+-.|+..|.   + .+   .+...+....+++..    ..++.++..+|.++.. .|  
T Consensus       358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~-~g--  434 (517)
T PRK10153        358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALV-KG--  434 (517)
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHh-cC--
Confidence            67899999999885  78888888888765   1 11   123455555555433    3456778888888753 33  


Q ss_pred             CCccCHHHHHHHHHHHHhCC-CHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCC
Q 018965          148 KNEKDLRAGVALCARAASIG-HVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREF  204 (348)
Q Consensus       148 ~~~~d~~~A~~~~~kAA~~G-~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~  204 (348)
                          ++++|...|++|.+.. +..+...+|.+|..    .-+.++|..+|++|....-
T Consensus       435 ----~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~----~G~~~eA~~~~~~A~~L~P  484 (517)
T PRK10153        435 ----KTDEAYQAINKAIDLEMSWLNYVLLGKVYEL----KGDNRLAADAYSTAFNLRP  484 (517)
T ss_pred             ----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCC
Confidence                8999999999999865 57788888988875    4488999999999986544

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=94.47  E-value=0.4  Score=44.52  Aligned_cols=119  Identities=17%  Similarity=0.051  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHHC----CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHH
Q 018965           81 SDSAHRFLKRCVFA----GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLR  154 (348)
Q Consensus        81 ~~~A~~~~~kaA~~----G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~  154 (348)
                      .+++...+.++...    .++...+.+|.++. -.++.++|+..|++|.+..  ++.+...|+.++.. .|   ......
T Consensus       126 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~-~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~-~~---~~~~~~  200 (280)
T PF13429_consen  126 YDEAEELLEKLEELPAAPDSARFWLALAEIYE-QLGDPDKALRDYRKALELDPDDPDARNALAWLLID-MG---DYDEAR  200 (280)
T ss_dssp             HHHHHHHHHHHHH-T---T-HHHHHHHHHHHH-HCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCT-TC---HHHHHH
T ss_pred             HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-CC---ChHHHH
Confidence            56777777775543    46677778888887 5668899999999998764  57777788777742 23   122233


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh--cCCHHHHH
Q 018965          155 AGVALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANA--REFFQSVS  209 (348)
Q Consensus       155 ~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~--~G~~~A~~  209 (348)
                      +++.-+.+.. ..++.-...||.+|..    -.+.++|+.||+++..  .+|+..+.
T Consensus       201 ~~l~~~~~~~-~~~~~~~~~la~~~~~----lg~~~~Al~~~~~~~~~~p~d~~~~~  252 (280)
T PF13429_consen  201 EALKRLLKAA-PDDPDLWDALAAAYLQ----LGRYEEALEYLEKALKLNPDDPLWLL  252 (280)
T ss_dssp             HHHHHHHHH--HTSCCHCHHHHHHHHH----HT-HHHHHHHHHHHHHHSTT-HHHHH
T ss_pred             HHHHHHHHHC-cCHHHHHHHHHHHhcc----cccccccccccccccccccccccccc
Confidence            4555555554 3455566677777764    3488999999999987  34555554

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=94.46  E-value=0.31  Score=34.97  Aligned_cols=78  Identities=18%  Similarity=0.241  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHCC--CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFAG--NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G--~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .++|+.+++++.+..  ++.+.+.+|.++. ...+.++|+.+|+++....  +..+.+.+|.++..       ..+..+|
T Consensus        16 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~a   87 (100)
T cd00189          16 YDEALEYYEKALELDPDNADAYYNLAAAYY-KLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK-------LGKYEEA   87 (100)
T ss_pred             HHHHHHHHHHHHhcCCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH-------HHhHHHH
Confidence            678999999987754  4578889999987 5678899999999988754  45688899988864       2367889


Q ss_pred             HHHHHHHHhC
Q 018965          157 VALCARAASI  166 (348)
Q Consensus       157 ~~~~~kAA~~  166 (348)
                      ..++.++.+.
T Consensus        88 ~~~~~~~~~~   97 (100)
T cd00189          88 LEAYEKALEL   97 (100)
T ss_pred             HHHHHHHHcc
Confidence            9999887653

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=94.39  E-value=0.54  Score=44.09  Aligned_cols=108  Identities=15%  Similarity=0.076  Sum_probs=87.3

Q ss_pred             HHHCCCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--
Q 018965           91 CVFAGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--  166 (348)
Q Consensus        91 aA~~G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--  166 (348)
                      ..+-+|++....||.+|+ ...+...|..=|.+|...  .+++..-.+|..+....|    .++..++...|++|...  
T Consensus       150 ~~nP~d~egW~~Lg~~ym-~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~----~~~ta~a~~ll~~al~~D~  224 (287)
T COG4235         150 QQNPGDAEGWDLLGRAYM-ALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAG----QQMTAKARALLRQALALDP  224 (287)
T ss_pred             HhCCCCchhHHHHHHHHH-HhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC----CcccHHHHHHHHHHHhcCC
Confidence            345589999999999999 678889999999999876  367777788877665555    46889999999999876  


Q ss_pred             CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHH
Q 018965          167 GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFFQS  207 (348)
Q Consensus       167 G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~~A  207 (348)
                      .|+.|++.||..++.    +.|+.+|...++.=.+...+.+
T Consensus       225 ~~iral~lLA~~afe----~g~~~~A~~~Wq~lL~~lp~~~  261 (287)
T COG4235         225 ANIRALSLLAFAAFE----QGDYAEAAAAWQMLLDLLPADD  261 (287)
T ss_pred             ccHHHHHHHHHHHHH----cccHHHHHHHHHHHHhcCCCCC
Confidence            689999999998875    6799999988887766555433

>PRK11906 transcriptional regulator; Provisional

Probab=94.28  E-value=0.55  Score=46.77  Aligned_cols=112  Identities=9%  Similarity=-0.013  Sum_probs=86.3

Q ss_pred             HHHhhhhhh--hccCCHHHHHHHHHHHH---h--CCCHHHHHHHHHHHHcc--CCCCCCccCHHHHHHHHHHHHhC--CC
Q 018965          100 CYTLGMIRF--YCLQNRSSGTSLMAKAA---M--KSHAPALYSLAVIQFNG--SGGGKNEKDLRAGVALCARAASI--GH  168 (348)
Q Consensus       100 ~~~Lg~~y~--~~~~d~~~A~~~~~~AA---~--~G~~~A~~~Lg~~y~~G--~g~~~~~~d~~~A~~~~~kAA~~--G~  168 (348)
                      .|..|...+  +.+.+...|+.+|.+|.   +  -+++.|+-.|+.+|..+  .|....+.+..+|.+.-++|.+.  .|
T Consensus       258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D  337 (458)
T PRK11906        258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD  337 (458)
T ss_pred             HHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC
Confidence            366776655  77888999999999999   3  34688999999988665  22222578899999999999986  57


Q ss_pred             HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHhhhhhh
Q 018965          169 VDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFFQSVSKTRTRH  215 (348)
Q Consensus       169 ~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~~A~~~~~~~~  215 (348)
                      +.|.+.+|.++..    ..+...|..||++|.....-.|+.-....|
T Consensus       338 a~a~~~~g~~~~~----~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~  380 (458)
T PRK11906        338 GKILAIMGLITGL----SGQAKVSHILFEQAKIHSTDIASLYYYRAL  380 (458)
T ss_pred             HHHHHHHHHHHHh----hcchhhHHHHHHHHhhcCCccHHHHHHHHH
Confidence            8888999986543    335889999999999998888876433333

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=94.23  E-value=0.078  Score=54.26  Aligned_cols=101  Identities=14%  Similarity=0.093  Sum_probs=80.8

Q ss_pred             CCCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCH
Q 018965           94 AGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHV  169 (348)
Q Consensus        94 ~G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~  169 (348)
                      ...|++.-.+|.+|. ..+|.+.|++.|++|....  ...|...+|.=+.       ...++++|+.+|++|...  -|.
T Consensus       418 ~~sPesWca~GNcfS-LQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~-------~~ee~d~a~~~fr~Al~~~~rhY  489 (638)
T KOG1126|consen  418 PNSPESWCALGNCFS-LQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESI-------ATEEFDKAMKSFRKALGVDPRHY  489 (638)
T ss_pred             CCCcHHHHHhcchhh-hhhHHHHHHHHHHHhhccCCccchhhhhcCChhh-------hhHHHHhHHHHHHhhhcCCchhh
Confidence            367889999999987 7899999999999998664  4556655553332       346789999999999865  589


Q ss_pred             HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHH
Q 018965          170 DAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFFQ  206 (348)
Q Consensus       170 ~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~~  206 (348)
                      .|.|-||..|..    ..-.+.|...|++|.+-.-..
T Consensus       490 nAwYGlG~vy~K----qek~e~Ae~~fqkA~~INP~n  522 (638)
T KOG1126|consen  490 NAWYGLGTVYLK----QEKLEFAEFHFQKAVEINPSN  522 (638)
T ss_pred             HHHHhhhhheec----cchhhHHHHHHHhhhcCCccc
Confidence            999999999986    456889999999998765543

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=94.15  E-value=0.15  Score=50.53  Aligned_cols=100  Identities=12%  Similarity=-0.009  Sum_probs=71.6

Q ss_pred             HHCCCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHH---HHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC
Q 018965           92 VFAGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAP---ALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI  166 (348)
Q Consensus        92 A~~G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~---A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~  166 (348)
                      ++-.+++++++||..|+ ..+++++|+.+|++|.+..  +++   |+|++|.+|.. .|      +.++|+..|++|.+.
T Consensus        70 ~dP~~a~a~~NLG~AL~-~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~-LG------r~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLF-SKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAY-RE------EGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHHh
Confidence            67789999999999998 6789999999999999875  443   49999999964 34      789999999999997


Q ss_pred             CCHHHHHHHHHHHhccCC--CCCCHHHHHHHHHHHHhcCC
Q 018965          167 GHVDAVRELGHCLQDGYG--VRQNIEKGRRLLIEANAREF  204 (348)
Q Consensus       167 G~~~A~~~Lg~~y~~G~G--v~~d~~~A~~w~~~Aa~~G~  204 (348)
                      ++..  |.   .+.+...  .=++.++..++++.+..-|.
T Consensus       142 sn~~--f~---~i~~DpdL~plR~~pef~eLlee~rk~G~  176 (453)
T PLN03098        142 YNLK--FS---TILNDPDLAPFRASPEFKELQEEARKGGE  176 (453)
T ss_pred             cchh--HH---HHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence            5432  22   1122111  12344455566666666664

>KOG2061 consensus Uncharacterized MYND Zn-finger protein [General function prediction only]

Probab=94.11  E-value=0.023  Score=54.35  Aligned_cols=46  Identities=37%  Similarity=0.898  Sum_probs=38.3

Q ss_pred             cccccCCCCCCCCccccccccCCCCCceeecChHHHHHhchhhchhcCCCCCC
Q 018965          270 LRLCSYSGCGRPETRVHEYRRCSVCGKVNYCSRACQAIDWKTRHKRECVPPLA  322 (348)
Q Consensus       270 ~~~C~~~~C~~~~~~~~~l~~C~~C~~~~YCs~~CQ~~~W~~~Hk~~C~~~~~  322 (348)
                      ...|..++|..  .     ..|+.|+...|||+..|..||+.+|+..|.....
T Consensus       136 ~~~~~~~~~~a--~-----~~~~~~~~a~~~S~~~q~~d~~~~~~~a~aq~~~  181 (362)
T KOG2061|consen  136 ADLCGSCGCSA--P-----AACSPCKAAAYCSKKHQSLDWPKGHKDACAQPST  181 (362)
T ss_pred             cchhccCcccC--c-----ccccccchhhhcCchhhcccccccccccccCccc
Confidence            35677666663  3     5699999999999999999999999999987763

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=94.04  E-value=1.6  Score=42.63  Aligned_cols=177  Identities=15%  Similarity=0.083  Sum_probs=101.2

Q ss_pred             CCCCCCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHhHHHHhccCCchhhcccC----chhhhhhc---cCcHHHHHHHH
Q 018965           16 KPDLFDALPDDLLECVLSKLISSAPSPSDFINVLLTCKRLNRVGLRPTVLSQAG----PKALAVKA---KNWSDSAHRFL   88 (348)
Q Consensus        16 ~~~~~~~l~~d~l~~il~~~a~~~~s~~d~~~~~l~~k~~~~~~~~~~~l~~~~----~~~~~~~~---~~~~~~A~~~~   88 (348)
                      .-...+-++.|++..++-..-    +..|+..+.-....+.......  +....    ...|++..   ..+.++|+.++
T Consensus       132 rLd~~~~ls~div~~lllSyR----diqdydamI~Lve~l~~~p~~~--~~~~~~i~~~yafALnRrn~~gdre~Al~il  205 (374)
T PF13281_consen  132 RLDDPELLSPDIVINLLLSYR----DIQDYDAMIKLVETLEALPTCD--VANQHNIKFQYAFALNRRNKPGDREKALQIL  205 (374)
T ss_pred             hhCCHhhcChhHHHHHHHHhh----hhhhHHHHHHHHHHhhccCccc--hhcchHHHHHHHHHHhhcccCCCHHHHHHHH
Confidence            333344567777777665332    4456665543333333331111  11111    24555554   45689999999


Q ss_pred             HHHH---HCCCHHHHHHhhhhhh-----h---ccCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHH-ccCCCCCCccC--H
Q 018965           89 KRCV---FAGNLEACYTLGMIRF-----Y---CLQNRSSGTSLMAKAAMKS-HAPALYSLAVIQF-NGSGGGKNEKD--L  153 (348)
Q Consensus        89 ~kaA---~~G~~~A~~~Lg~~y~-----~---~~~d~~~A~~~~~~AA~~G-~~~A~~~Lg~~y~-~G~g~~~~~~d--~  153 (348)
                      .+..   +.-+++..-.+|.+|-     .   ......+|++||.++-+.. +..+-.|++.++. .|..   .+.+  .
T Consensus       206 ~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~---~~~~~el  282 (374)
T PF13281_consen  206 LPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHD---FETSEEL  282 (374)
T ss_pred             HHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCc---ccchHHH
Confidence            8833   3457888999999986     1   1224789999999999875 3334446666553 4443   2221  1


Q ss_pred             -HHHHHHHHHHHhCC---CHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          154 -RAGVALCARAASIG---HVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       154 -~~A~~~~~kAA~~G---~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                       +-.+.+=....+.|   ...-.+.+|.+.+-... ..|.++|..|++++...
T Consensus       283 ~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL-~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  283 RKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVL-AGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             HHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH-cCCHHHHHHHHHHHhhc
Confidence             11223333344455   34455566666555433 34999999999999865

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=93.86  E-value=0.27  Score=48.85  Aligned_cols=70  Identities=19%  Similarity=0.145  Sum_probs=58.2

Q ss_pred             HhCCCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHH---HHHHHHHHHhccCCCCCCHHHHHHHHHHH
Q 018965          125 AMKSHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVD---AVRELGHCLQDGYGVRQNIEKGRRLLIEA  199 (348)
Q Consensus       125 A~~G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~---A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~A  199 (348)
                      ++-.++.++++||..|.. .|      ++++|+.+|++|.+.  .+.+   +.|++|.+|..    ..+.++|+..|++|
T Consensus        70 ~dP~~a~a~~NLG~AL~~-lG------ryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~----LGr~dEAla~LrrA  138 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFS-KG------RVKDALAQFETALELNPNPDEAQAAYYNKACCHAY----REEGKKAADCLRTA  138 (453)
T ss_pred             CCCCCHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Confidence            567799999999999964 23      899999999999986  4554   49999999986    45999999999999


Q ss_pred             HhcCCH
Q 018965          200 NAREFF  205 (348)
Q Consensus       200 a~~G~~  205 (348)
                      .+.++.
T Consensus       139 Lelsn~  144 (453)
T PLN03098        139 LRDYNL  144 (453)
T ss_pred             HHhcch
Confidence            997544

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=93.59  E-value=0.82  Score=42.57  Aligned_cols=78  Identities=19%  Similarity=0.253  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHC--CC---HHHHHHhhhhhhhccCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHccCCCCCCc
Q 018965           81 SDSAHRFLKRCVFA--GN---LEACYTLGMIRFYCLQNRSSGTSLMAKAAMK-----SHAPALYSLAVIQFNGSGGGKNE  150 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~---~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~-----G~~~A~~~Lg~~y~~G~g~~~~~  150 (348)
                      +++|+..|++..+.  .+   +.|+|.||.+|+ ..+++++|+..|++..+.     -.++|++.+|.+|.. .|     
T Consensus       159 y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~-~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~-~g-----  231 (263)
T PRK10803        159 QDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNY-NKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQD-KG-----  231 (263)
T ss_pred             HHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHH-cC-----
Confidence            67888888887764  23   589999999998 789999999999999953     258899999999963 33     


Q ss_pred             cCHHHHHHHHHHHHhC
Q 018965          151 KDLRAGVALCARAASI  166 (348)
Q Consensus       151 ~d~~~A~~~~~kAA~~  166 (348)
                       |..+|...|++..+.
T Consensus       232 -~~~~A~~~~~~vi~~  246 (263)
T PRK10803        232 -DTAKAKAVYQQVIKK  246 (263)
T ss_pred             -CHHHHHHHHHHHHHH
Confidence             889999999988775

>TIGR00540 hemY_coli hemY protein

Probab=93.55  E-value=1.3  Score=43.72  Aligned_cols=77  Identities=6%  Similarity=0.069  Sum_probs=33.2

Q ss_pred             CCHHHHHHHHHHHHhC--CCH--HHHHHHHHHHHccCCCCCCccCHHHHHHHHHH--HHh-CCCHHHHHHHHHHHhccCC
Q 018965          112 QNRSSGTSLMAKAAMK--SHA--PALYSLAVIQFNGSGGGKNEKDLRAGVALCAR--AAS-IGHVDAVRELGHCLQDGYG  184 (348)
Q Consensus       112 ~d~~~A~~~~~~AA~~--G~~--~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~k--AA~-~G~~~A~~~Lg~~y~~G~G  184 (348)
                      .|..++.+.++++.+.  +++  .....||.++..       ..++.+|.++|++  +-+ .-++.....||.++..   
T Consensus       313 ~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~-------~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~---  382 (409)
T TIGR00540       313 EDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMK-------HGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQ---  382 (409)
T ss_pred             CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH-------cccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHH---
Confidence            3444455555444443  344  334445555431       1244555555553  222 2233333345554443   


Q ss_pred             CCCCHHHHHHHHHHH
Q 018965          185 VRQNIEKGRRLLIEA  199 (348)
Q Consensus       185 v~~d~~~A~~w~~~A  199 (348)
                       ..+.++|.++|+++
T Consensus       383 -~g~~~~A~~~~~~~  396 (409)
T TIGR00540       383 -AGDKAEAAAMRQDS  396 (409)
T ss_pred             -cCCHHHHHHHHHHH
Confidence             23445555555544

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=93.52  E-value=0.87  Score=48.25  Aligned_cols=104  Identities=8%  Similarity=-0.052  Sum_probs=85.3

Q ss_pred             CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHH
Q 018965           95 GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVD  170 (348)
Q Consensus        95 G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~  170 (348)
                      -+++++++||.+.. .-...++|..||+.+.+.  +|..|..+++.++..       .+-+++|+.+++++...  .++.
T Consensus        84 ~~~~~~~~La~i~~-~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~-------~~~~eeA~~~~~~~l~~~p~~~~  155 (694)
T PRK15179         84 HTELFQVLVARALE-AAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKR-------QQGIEAGRAEIELYFSGGSSSAR  155 (694)
T ss_pred             ccHHHHHHHHHHHH-HcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-------hccHHHHHHHHHHHhhcCCCCHH
Confidence            46899999999987 556788999999999976  589999999999864       34579999999999876  5899


Q ss_pred             HHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC--CHHHHHh
Q 018965          171 AVRELGHCLQDGYGVRQNIEKGRRLLIEANARE--FFQSVSK  210 (348)
Q Consensus       171 A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G--~~~A~~~  210 (348)
                      +++.+|.++..    --.+++|...|+++..++  ++.++.+
T Consensus       156 ~~~~~a~~l~~----~g~~~~A~~~y~~~~~~~p~~~~~~~~  193 (694)
T PRK15179        156 EILLEAKSWDE----IGQSEQADACFERLSRQHPEFENGYVG  193 (694)
T ss_pred             HHHHHHHHHHH----hcchHHHHHHHHHHHhcCCCcHHHHHH
Confidence            99999998764    337899999999999755  3455554

>PRK14574 hmsH outer membrane protein; Provisional

Probab=93.51  E-value=0.66  Score=50.12  Aligned_cols=112  Identities=7%  Similarity=-0.068  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHh--hhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFAGNLEACYTL--GMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G~~~A~~~L--g~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .++|+.+++++.+..+....-.+  |.+|. ..+++.+|+++|+++.+..  ++.+++.|+..|..-       ...++|
T Consensus        84 ~~~A~~~~eka~~p~n~~~~~llalA~ly~-~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~-------~q~~eA  155 (822)
T PRK14574         84 DQEVIDVYERYQSSMNISSRGLASAARAYR-NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADA-------GRGGVV  155 (822)
T ss_pred             cHHHHHHHHHhccCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhc-------CCHHHH
Confidence            78999999999976665555555  66887 6789999999999999875  677887776666432       367899


Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965          157 VALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE  203 (348)
Q Consensus       157 ~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G  203 (348)
                      ++.++++...--. ..+.++..|... | ..+..+|+.-|+++.+..
T Consensus       156 l~~l~~l~~~dp~-~~~~l~layL~~-~-~~~~~~AL~~~ekll~~~  199 (822)
T PRK14574        156 LKQATELAERDPT-VQNYMTLSYLNR-A-TDRNYDALQASSEAVRLA  199 (822)
T ss_pred             HHHHHHhcccCcc-hHHHHHHHHHHH-h-cchHHHHHHHHHHHHHhC
Confidence            9999998765322 333355555442 2 223333666666666653

>PRK15331 chaperone protein SicA; Provisional

Probab=93.44  E-value=1  Score=38.80  Aligned_cols=78  Identities=12%  Similarity=0.015  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHCC--CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFAG--NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G--~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .++|..+|+-..-.+  |++=.+.||.++. ..+++++|+..|..|+..  ++|...|..|.||+.       -.|..+|
T Consensus        53 ~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q-~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~-------l~~~~~A  124 (165)
T PRK15331         53 LDEAETFFRFLCIYDFYNPDYTMGLAAVCQ-LKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL-------MRKAAKA  124 (165)
T ss_pred             HHHHHHHHHHHHHhCcCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH-------hCCHHHH
Confidence            566666666655543  4443444444444 566777777777777654  467777777777753       2366777


Q ss_pred             HHHHHHHHhC
Q 018965          157 VALCARAASI  166 (348)
Q Consensus       157 ~~~~~kAA~~  166 (348)
                      ...|..+.++
T Consensus       125 ~~~f~~a~~~  134 (165)
T PRK15331        125 RQCFELVNER  134 (165)
T ss_pred             HHHHHHHHhC
Confidence            7777777664

>PRK14574 hmsH outer membrane protein; Provisional

Probab=92.96  E-value=1.4  Score=47.55  Aligned_cols=110  Identities=15%  Similarity=0.010  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHHCC--CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFAG--NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKSH--APALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G--~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G~--~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      ...|+..|+++.+..  ++.+.+.+..++. ..++.++|+.+++++....+  ..+...+|.+|..       .+++.+|
T Consensus        50 ~~~Al~~L~qaL~~~P~~~~av~dll~l~~-~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~-------~gdyd~A  121 (822)
T PRK14574         50 TAPVLDYLQEESKAGPLQSGQVDDWLQIAG-WAGRDQEVIDVYERYQSSMNISSRGLASAARAYRN-------EKRWDQA  121 (822)
T ss_pred             HHHHHHHHHHHHhhCccchhhHHHHHHHHH-HcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHH-------cCCHHHH
Confidence            679999999987654  3334556666655 45888999999999996544  4444455778863       3478899


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          157 VALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       157 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                      +++|+++.+.  +++.+++.|+..|..-    ...++|+..++++...
T Consensus       122 iely~kaL~~dP~n~~~l~gLa~~y~~~----~q~~eAl~~l~~l~~~  165 (822)
T PRK14574        122 LALWQSSLKKDPTNPDLISGMIMTQADA----GRGGVVLKQATELAER  165 (822)
T ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHhhc----CCHHHHHHHHHHhccc
Confidence            9999999986  5788888776776653    5677787777776543

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=92.70  E-value=0.027  Score=37.65  Aligned_cols=41  Identities=32%  Similarity=0.555  Sum_probs=31.5

Q ss_pred             CCCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHhHHHHhccCCchh
Q 018965           19 LFDALPDDLLECVLSKLISSAPSPSDFINVLLTCKRLNRVGLRPTV   64 (348)
Q Consensus        19 ~~~~l~~d~l~~il~~~a~~~~s~~d~~~~~l~~k~~~~~~~~~~~   64 (348)
                      +|.+||+|++.+||..+     ++.|+.++..+|+.|+........
T Consensus         2 ~~~~LP~~il~~Il~~l-----~~~~~~~l~~vsk~~~~~~~~~~~   42 (48)
T PF00646_consen    2 PLSDLPDEILQEILSYL-----DPKDLLRLSLVSKRWRSLVDSPRL   42 (48)
T ss_dssp             HHHHS-HHHHHHHHHTS------HHHHHHHCTT-HHHHHHHTTHHH
T ss_pred             CHHHCCHHHHHHHHHHC-----cHHHHHHHHHHhhHHHHHHcCCCc
Confidence            35679999999999977     456999999999999988765443

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=92.56  E-value=1.3  Score=42.31  Aligned_cols=116  Identities=16%  Similarity=0.142  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHhhhhhh------hccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCH
Q 018965           82 DSAHRFLKRCVFAGNLEACYTLGMIRF------YCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDL  153 (348)
Q Consensus        82 ~~A~~~~~kaA~~G~~~A~~~Lg~~y~------~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~  153 (348)
                      +||++.=++-+..|.-+=.+.++.+|-      -...|.++|+.|+.||.+..  ...|-..||.++. +.|      |+
T Consensus       158 ~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~-~~g------~y  230 (389)
T COG2956         158 EKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVEL-AKG------DY  230 (389)
T ss_pred             HHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHH-hcc------ch
Confidence            456665555666666666666666654      36788999999999999986  6789999999986 345      89


Q ss_pred             HHHHHHHHHHHhCCC---HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 018965          154 RAGVALCARAASIGH---VDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFFQSV  208 (348)
Q Consensus       154 ~~A~~~~~kAA~~G~---~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~~A~  208 (348)
                      ++|++-++...++..   ++..-.|-.+|..    -.+.++.+.|+.++.+.-...+.
T Consensus       231 ~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~----lg~~~~~~~fL~~~~~~~~g~~~  284 (389)
T COG2956         231 QKAVEALERVLEQNPEYLSEVLEMLYECYAQ----LGKPAEGLNFLRRAMETNTGADA  284 (389)
T ss_pred             HHHHHHHHHHHHhChHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHccCCccH
Confidence            999999999999865   3345556667765    34778999999999876554433

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=92.08  E-value=2.4  Score=39.01  Aligned_cols=112  Identities=20%  Similarity=0.154  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHCCCHH--HHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHHH
Q 018965           82 DSAHRFLKRCVFAGNLE--ACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAGV  157 (348)
Q Consensus        82 ~~A~~~~~kaA~~G~~~--A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~  157 (348)
                      +.++....+.+..-..+  ....+|...+ ...|+..|+.-+++|+...  +.++...||.+|.. .|      +...|.
T Consensus        83 ~~~l~~~~~~~~~~~~d~~ll~~~gk~~~-~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq-~G------r~~~Ar  154 (257)
T COG5010          83 DSSLAVLQKSAIAYPKDRELLAAQGKNQI-RNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQ-LG------RFDEAR  154 (257)
T ss_pred             cchHHHHhhhhccCcccHHHHHHHHHHHH-HhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHH-cc------ChhHHH
Confidence            45555666655543333  2222455544 6778899999999998764  77888899999864 33      567888


Q ss_pred             HHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCH
Q 018965          158 ALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFF  205 (348)
Q Consensus       158 ~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~  205 (348)
                      .-|.+|.+.  +++....|||+.|.    +..|++.|..++..|..++..
T Consensus       155 ~ay~qAl~L~~~~p~~~nNlgms~~----L~gd~~~A~~lll~a~l~~~a  200 (257)
T COG5010         155 RAYRQALELAPNEPSIANNLGMSLL----LRGDLEDAETLLLPAYLSPAA  200 (257)
T ss_pred             HHHHHHHHhccCCchhhhhHHHHHH----HcCCHHHHHHHHHHHHhCCCC
Confidence            888888874  68889999998765    255999999999999888774

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=92.04  E-value=2.2  Score=46.36  Aligned_cols=109  Identities=17%  Similarity=0.147  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhh-----------------hccCCHHHHHHHHH-HHHhCCC-HHHHHHHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRF-----------------YCLQNRSSGTSLMA-KAAMKSH-APALYSLAVI  139 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~-----------------~~~~d~~~A~~~~~-~AA~~G~-~~A~~~Lg~~  139 (348)
                      .+++....+.+.+.  +.+.++|.+|.+|+                 ....+. .++++|. +-.+-++ -.|.+.||.+
T Consensus        47 ~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~  125 (906)
T PRK14720         47 TDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKW-AIVEHICDKILLYGENKLALRTLAEA  125 (906)
T ss_pred             HHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccch-hHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence            66777777755553  46677888887765                 011123 3444443 3334443 3599999999


Q ss_pred             HHccCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          140 QFNGSGGGKNEKDLRAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       140 y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                      |..- |      +.++|+..|+++.+.  .|+.++.+||..|..-     |+++|..++.+|...
T Consensus       126 Ydk~-g------~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-----dL~KA~~m~~KAV~~  178 (906)
T PRK14720        126 YAKL-N------ENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-----DKEKAITYLKKAIYR  178 (906)
T ss_pred             HHHc-C------ChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHH
Confidence            9642 2      568999999999875  6899999999999863     999999999999876

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=91.91  E-value=9  Score=37.65  Aligned_cols=110  Identities=7%  Similarity=-0.000  Sum_probs=80.8

Q ss_pred             cCcHHHHHHHHHHHHHCC-CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHH
Q 018965           78 KNWSDSAHRFLKRCVFAG-NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLR  154 (348)
Q Consensus        78 ~~~~~~A~~~~~kaA~~G-~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~  154 (348)
                      .+..++|...++++-+.. |++.....+.+   ...|..+++..+++-.++  +++...+.+|.++..       .++..
T Consensus       276 ~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l---~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~-------~~~~~  345 (398)
T PRK10747        276 CDDHDTAQQIILDGLKRQYDERLVLLIPRL---KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMK-------HGEWQ  345 (398)
T ss_pred             CCCHHHHHHHHHHHHhcCCCHHHHHHHhhc---cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-------CCCHH
Confidence            344889999999988754 44333333333   236788888888777665  477788899999964       34789


Q ss_pred             HHHHHHHHHHhCCC-HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965          155 AGVALCARAASIGH-VDAVRELGHCLQDGYGVRQNIEKGRRLLIEANA  201 (348)
Q Consensus       155 ~A~~~~~kAA~~G~-~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~  201 (348)
                      +|.++|+++.+... ......|+.++..    ..+.++|..+|+++..
T Consensus       346 ~A~~~le~al~~~P~~~~~~~La~~~~~----~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        346 EASLAFRAALKQRPDAYDYAWLADALDR----LHKPEEAAAMRRDGLM  389 (398)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Confidence            99999999998854 4455889998875    4478999999998854

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=91.67  E-value=0.17  Score=47.73  Aligned_cols=48  Identities=19%  Similarity=0.369  Sum_probs=42.5

Q ss_pred             CCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHhHHHHhccCCchhhcc
Q 018965           20 FDALPDDLLECVLSKLISSAPSPSDFINVLLTCKRLNRVGLRPTVLSQ   67 (348)
Q Consensus        20 ~~~l~~d~l~~il~~~a~~~~s~~d~~~~~l~~k~~~~~~~~~~~l~~   67 (348)
                      |..||+|+|.+||..+.++.-+..++.++.++|+.|.....++.++..
T Consensus       107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~  154 (366)
T KOG2997|consen  107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRL  154 (366)
T ss_pred             hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHH
Confidence            577999999999999998777889999999999999999988776543

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=91.54  E-value=0.34  Score=31.72  Aligned_cols=25  Identities=24%  Similarity=0.247  Sum_probs=11.6

Q ss_pred             CHHHHHHHHHHHHhC--CCHHHHHHHH
Q 018965          152 DLRAGVALCARAASI--GHVDAVRELG  176 (348)
Q Consensus       152 d~~~A~~~~~kAA~~--G~~~A~~~Lg  176 (348)
                      ++++|.++|+++.+.  +++.+.+.||
T Consensus        16 ~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen   16 QPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             CHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            344444555444433  3444444444

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.29  E-value=1.7  Score=39.70  Aligned_cols=97  Identities=23%  Similarity=0.225  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHhhhhhhhccCCHHHHHHHHHHHHh-------CCCHHHHH-HHHHHHHccCCCCCCccC
Q 018965           81 SDSAHRFLKRCVFAGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAM-------KSHAPALY-SLAVIQFNGSGGGKNEKD  152 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~-------~G~~~A~~-~Lg~~y~~G~g~~~~~~d  152 (348)
                      +++|.++|.+|+.      +|.|+       ++...|=.-|.+||+       ..+.--+| ..+.+|.        ..|
T Consensus        30 ~eeAadl~~~Aan------~ykla-------K~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cyk--------k~~   88 (288)
T KOG1586|consen   30 YEEAAELYERAAN------MYKLA-------KNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYK--------KVD   88 (288)
T ss_pred             hHHHHHHHHHHHH------HHHHH-------HhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh--------ccC
Confidence            7888899998864      34443       333444444444443       22222222 4445563        337


Q ss_pred             HHHHHHHHHHHHh----CCCHH----HHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965          153 LRAGVALCARAAS----IGHVD----AVRELGHCLQDGYGVRQNIEKGRRLLIEANA  201 (348)
Q Consensus       153 ~~~A~~~~~kAA~----~G~~~----A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~  201 (348)
                      +.+|+..+++|.+    .|.-.    =...+|.+|++-   .+|.++|+..|++|++
T Consensus        89 ~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsd---l~d~ekaI~~YE~Aae  142 (288)
T KOG1586|consen   89 PEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESD---LQDFEKAIAHYEQAAE  142 (288)
T ss_pred             hHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhh---HHHHHHHHHHHHHHHH
Confidence            8899999998876    34321    134678888863   3799999999999987

>PLN03158 methionine aminopeptidase; Provisional

Probab=91.24  E-value=0.18  Score=49.80  Aligned_cols=42  Identities=26%  Similarity=0.767  Sum_probs=33.6

Q ss_pred             CCccccccCCCCCCCCccccccccCCCCCc-------eeecChHHHHHhchhhchhc
Q 018965          267 GNGLRLCSYSGCGRPETRVHEYRRCSVCGK-------VNYCSRACQAIDWKTRHKRE  316 (348)
Q Consensus       267 ~~~~~~C~~~~C~~~~~~~~~l~~C~~C~~-------~~YCs~~CQ~~~W~~~Hk~~  316 (348)
                      ....+.|.  +|++..+     ..|..|..       .++||.+|=+..|+. ||..
T Consensus         6 ~~~~~~c~--~c~~~a~-----l~Cp~C~k~~~~~~~s~fCsq~CFk~~w~~-Hk~~   54 (396)
T PLN03158          6 TTSPLACA--RCSKPAH-----LQCPKCLELKLPREGASFCSQDCFKAAWSS-HKSV   54 (396)
T ss_pred             CCCccccc--CCCCccc-----ccCccchhcCCCCCCceeECHHHHHHHHHH-HHHH
Confidence            35556798  6998655     88998864       789999999999997 8764

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=91.18  E-value=2.8  Score=39.88  Aligned_cols=93  Identities=13%  Similarity=-0.032  Sum_probs=66.9

Q ss_pred             HHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhCC----C--H
Q 018965           98 EACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASIG----H--V  169 (348)
Q Consensus        98 ~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~G----~--~  169 (348)
                      .+...+|.++. ..++..+|...++++.+..  ++.+.+.||.+|.. .|      ++++|..+|.++.+.-    .  .
T Consensus       115 ~~~~~~a~~~~-~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~-~g------~~~eA~~~l~~~l~~~~~~~~~~~  186 (355)
T cd05804         115 YLLGMLAFGLE-EAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM-QG------RFKEGIAFMESWRDTWDCSSMLRG  186 (355)
T ss_pred             HHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cC------CHHHHHHHHHhhhhccCCCcchhH
Confidence            45555666666 5678889999999998765  56678888888854 34      6789999999988742    1  1


Q ss_pred             HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          170 DAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       170 ~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                      ...+.++.+|..    ..+.++|+.+|+++...
T Consensus       187 ~~~~~la~~~~~----~G~~~~A~~~~~~~~~~  215 (355)
T cd05804         187 HNWWHLALFYLE----RGDYEAALAIYDTHIAP  215 (355)
T ss_pred             HHHHHHHHHHHH----CCCHHHHHHHHHHHhcc
Confidence            234567877764    45889999999988543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=90.83  E-value=0.42  Score=28.83  Aligned_cols=28  Identities=32%  Similarity=0.360  Sum_probs=15.9

Q ss_pred             HHHHHhhhhhhhccCCHHHHHHHHHHHHh
Q 018965           98 EACYTLGMIRFYCLQNRSSGTSLMAKAAM  126 (348)
Q Consensus        98 ~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~  126 (348)
                      ++.+.+|.+|+ ..++.++|+++|++|.+
T Consensus         2 ~~~~~lg~~~~-~~~~~~~A~~~~~~al~   29 (34)
T PF07719_consen    2 EAWYYLGQAYY-QLGNYEEAIEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHH-HTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-HhCCHHHHHHHHHHHHH
Confidence            45566666665 45566666666666543

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.67  E-value=3.2  Score=38.52  Aligned_cols=91  Identities=18%  Similarity=0.155  Sum_probs=70.7

Q ss_pred             HHHhhhhhhhccCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC-----CCH
Q 018965          100 CYTLGMIRFYCLQNRSSGTSLMAKAAMKS-----HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI-----GHV  169 (348)
Q Consensus       100 ~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G-----~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~-----G~~  169 (348)
                      .|+.+.-++ -.+|+..|..-|..=.+..     .+.|+|.||..++       ...|++.|.+.|...+..     --+
T Consensus       144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y-------~qg~y~~Aa~~f~~~~k~~P~s~KAp  215 (262)
T COG1729         144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLY-------AQGDYEDAAYIFARVVKDYPKSPKAP  215 (262)
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHH-------hcccchHHHHHHHHHHHhCCCCCCCh
Confidence            566666555 4567888888887777665     5789999999986       334889999999999873     457


Q ss_pred             HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          170 DAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       170 ~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                      ++++.||.+...    ..+.++|...|++...+
T Consensus       216 dallKlg~~~~~----l~~~d~A~atl~qv~k~  244 (262)
T COG1729         216 DALLKLGVSLGR----LGNTDEACATLQQVIKR  244 (262)
T ss_pred             HHHHHHHHHHHH----hcCHHHHHHHHHHHHHH
Confidence            999999997654    56889999999988754

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=90.28  E-value=6  Score=38.89  Aligned_cols=116  Identities=9%  Similarity=0.038  Sum_probs=80.9

Q ss_pred             ccCcHHHHHHHHHHHHHCC-CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC-CH-HHHH-HHHHHHHccCCCCCCccC
Q 018965           77 AKNWSDSAHRFLKRCVFAG-NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS-HA-PALY-SLAVIQFNGSGGGKNEKD  152 (348)
Q Consensus        77 ~~~~~~~A~~~~~kaA~~G-~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G-~~-~A~~-~Lg~~y~~G~g~~~~~~d  152 (348)
                      .++ .++|.+.+.++++.. +|...+.++-......+|++.|..||++|++.. +. .+.. ..+.++.. .|      |
T Consensus        97 eGd-~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~-~g------~  168 (398)
T PRK10747         97 EGD-YQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLA-RN------E  168 (398)
T ss_pred             CCC-HHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH-CC------C
Confidence            344 568999999988875 444444444444357889999999999999853 22 2332 23556643 23      7


Q ss_pred             HHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCC
Q 018965          153 LRAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREF  204 (348)
Q Consensus       153 ~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~  204 (348)
                      +++|...+++..+.  .++.+...++.+|..    ..|.++|...+.+....+.
T Consensus       169 ~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~----~gdw~~a~~~l~~l~k~~~  218 (398)
T PRK10747        169 NHAARHGVDKLLEVAPRHPEVLRLAEQAYIR----TGAWSSLLDILPSMAKAHV  218 (398)
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHcCC
Confidence            89999999998876  589999999998865    3577777777666665543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=90.24  E-value=0.42  Score=45.16  Aligned_cols=51  Identities=24%  Similarity=0.378  Sum_probs=41.4

Q ss_pred             ccCCCCCCCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHhHHHHhccCCchhhccc
Q 018965           13 LVEKPDLFDALPDDLLECVLSKLISSAPSPSDFINVLLTCKRLNRVGLRPTVLSQA   68 (348)
Q Consensus        13 ~~~~~~~~~~l~~d~l~~il~~~a~~~~s~~d~~~~~l~~k~~~~~~~~~~~l~~~   68 (348)
                      +.-+.-.|+.|||+++.-||+.+.-     .++..+..+|++|+..+.+...+...
T Consensus        91 ~~npgv~~~slpDEill~IFs~L~k-----k~LL~~~~VC~Rfyr~~~de~lW~~l  141 (419)
T KOG2120|consen   91 ENNPGVSWDSLPDEILLGIFSCLCK-----KELLKVSGVCKRFYRLASDESLWQTL  141 (419)
T ss_pred             ccCCCCCcccCCHHHHHHHHHhccH-----HHHHHHHHHHHHHhhccccccceeee
Confidence            3334445899999999999998865     59999999999999999877665443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=89.70  E-value=3.6  Score=33.48  Aligned_cols=77  Identities=19%  Similarity=0.177  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHCCCH-----HHHHHhhhhhhhccCCHHHHHHHHHHHHhC--C---CHHHHHHHHHHHHccCCCCCCc
Q 018965           81 SDSAHRFLKRCVFAGNL-----EACYTLGMIRFYCLQNRSSGTSLMAKAAMK--S---HAPALYSLAVIQFNGSGGGKNE  150 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G~~-----~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G---~~~A~~~Lg~~y~~G~g~~~~~  150 (348)
                      .++|+.+|+++.+.|-.     .+...||..|. .-..+++|+.+|+++...  +   +....+.++..+.+ .|     
T Consensus        17 ~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr-~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~-~g-----   89 (120)
T PF12688_consen   17 EEEAIPLYRRALAAGLSGADRRRALIQLASTLR-NLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN-LG-----   89 (120)
T ss_pred             HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH-CC-----
Confidence            78999999999998744     46677777776 667899999999999876  2   44566666766543 22     


Q ss_pred             cCHHHHHHHHHHHHh
Q 018965          151 KDLRAGVALCARAAS  165 (348)
Q Consensus       151 ~d~~~A~~~~~kAA~  165 (348)
                       ..++|+.|+..+..
T Consensus        90 -r~~eAl~~~l~~la  103 (120)
T PF12688_consen   90 -RPKEALEWLLEALA  103 (120)
T ss_pred             -CHHHHHHHHHHHHH
Confidence             56889999988764

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=89.67  E-value=1.5  Score=46.61  Aligned_cols=37  Identities=16%  Similarity=0.181  Sum_probs=30.8

Q ss_pred             hCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCH
Q 018965          165 SIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFF  205 (348)
Q Consensus       165 ~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~  205 (348)
                      +.|+..|.|.||.+|++    .-|..+|+++|.+|-.--|+
T Consensus       963 esgd~AAcYhlaR~YEn----~g~v~~Av~FfTrAqafsnA  999 (1416)
T KOG3617|consen  963 ESGDKAACYHLARMYEN----DGDVVKAVKFFTRAQAFSNA  999 (1416)
T ss_pred             hcccHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHH
Confidence            46999999999999997    45788999999999655444

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=89.61  E-value=3.6  Score=41.88  Aligned_cols=45  Identities=13%  Similarity=0.128  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965          153 LRAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANA  201 (348)
Q Consensus       153 ~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~  201 (348)
                      +.+|+.+|++|-..  -++.....+|.+|..    ..|+..|+..|-+|-.
T Consensus       471 ~~eAI~~~q~aL~l~~k~~~~~asig~iy~l----lgnld~Aid~fhKaL~  517 (611)
T KOG1173|consen  471 YEEAIDYYQKALLLSPKDASTHASIGYIYHL----LGNLDKAIDHFHKALA  517 (611)
T ss_pred             HHHHHHHHHHHHHcCCCchhHHHHHHHHHHH----hcChHHHHHHHHHHHh
Confidence            34555555555543  345555555555542    3455555555555543

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=89.50  E-value=0.9  Score=29.66  Aligned_cols=41  Identities=20%  Similarity=0.101  Sum_probs=35.4

Q ss_pred             HHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHH
Q 018965           97 LEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAV  138 (348)
Q Consensus        97 ~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~  138 (348)
                      |++.+.||..|. ..+++++|+.+|+++.+..  ++.+.+.||.
T Consensus         1 p~~~~~la~~~~-~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYR-RLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            467889999998 7889999999999999984  7888888875

>TIGR00540 hemY_coli hemY protein

Probab=88.77  E-value=5.6  Score=39.20  Aligned_cols=96  Identities=14%  Similarity=0.020  Sum_probs=68.3

Q ss_pred             CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCH--H
Q 018965           95 GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHV--D  170 (348)
Q Consensus        95 G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~--~  170 (348)
                      .++...+.++..+. ..++.++|.+.++++.++.-......+..+...+.-   .+.|..++.+.++++.+.  +++  .
T Consensus       261 ~~~~l~~~~a~~l~-~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l---~~~~~~~~~~~~e~~lk~~p~~~~~~  336 (409)
T TIGR00540       261 HNIALKIALAEHLI-DCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRL---KPEDNEKLEKLIEKQAKNVDDKPKCC  336 (409)
T ss_pred             CCHHHHHHHHHHHH-HCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhc---CCCChHHHHHHHHHHHHhCCCChhHH
Confidence            47788888888777 678899999999999986433221111111111111   235778888888888765  778  7


Q ss_pred             HHHHHHHHHhccCCCCCCHHHHHHHHHH
Q 018965          171 AVRELGHCLQDGYGVRQNIEKGRRLLIE  198 (348)
Q Consensus       171 A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~  198 (348)
                      ....||.++..    .++..+|..+|++
T Consensus       337 ll~sLg~l~~~----~~~~~~A~~~le~  360 (409)
T TIGR00540       337 INRALGQLLMK----HGEFIEAADAFKN  360 (409)
T ss_pred             HHHHHHHHHHH----cccHHHHHHHHHH
Confidence            77799998875    6789999999995

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PLN03218 maturation of RBCL 1; Provisional

Probab=88.51  E-value=13  Score=41.60  Aligned_cols=116  Identities=13%  Similarity=0.082  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHHCC---CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHccCCCCCCccCHH
Q 018965           81 SDSAHRFLKRCVFAG---NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS---HAPALYSLAVIQFNGSGGGKNEKDLR  154 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G---~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G---~~~A~~~Lg~~y~~G~g~~~~~~d~~  154 (348)
                      .++|..+|....+.|   +...+..|..+|. ..++.++|.++|++.-+.|   +...+..|-..|..       ..+.+
T Consensus       665 ~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~-k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k-------~G~~e  736 (1060)
T PLN03218        665 LDKAFEILQDARKQGIKLGTVSYSSLMGACS-NAKNWKKALELYEDIKSIKLRPTVSTMNALITALCE-------GNQLP  736 (1060)
T ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-------CCCHH
Confidence            566777777766666   3445555555554 4566777777777665544   33344444444422       22567


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCH
Q 018965          155 AGVALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFF  205 (348)
Q Consensus       155 ~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~  205 (348)
                      +|+++|.+-.+.|...-...+..+. .+..-..+.++|..++.+..+.|..
T Consensus       737 eAlelf~eM~~~Gi~Pd~~Ty~sLL-~a~~k~G~le~A~~l~~~M~k~Gi~  786 (1060)
T PLN03218        737 KALEVLSEMKRLGLCPNTITYSILL-VASERKDDADVGLDLLSQAKEDGIK  786 (1060)
T ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHcCCC
Confidence            7888887776666433222222222 2333455778888888888777753

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=88.18  E-value=7  Score=41.85  Aligned_cols=112  Identities=16%  Similarity=0.107  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .+.|.+.+.....+  .++.|.+.||.+|. ..+|.+++...+..||-.  ++.+=+..++.+... .|      ++.+|
T Consensus       155 ~eeA~~i~~EvIkqdp~~~~ay~tL~~IyE-qrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~-~~------~i~qA  226 (895)
T KOG2076|consen  155 LEEAEEILMEVIKQDPRNPIAYYTLGEIYE-QRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ-LG------NINQA  226 (895)
T ss_pred             HHHHHHHHHHHHHhCccchhhHHHHHHHHH-HcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh-cc------cHHHH
Confidence            67777777777665  36778888888887 344778887777777743  466666667666532 22      57888


Q ss_pred             HHHHHHHHhCC--CHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCC
Q 018965          157 VALCARAASIG--HVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREF  204 (348)
Q Consensus       157 ~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~  204 (348)
                      ..+|.+|....  +..-.++-+.+|.+    .-+..+|..=|.+....-.
T Consensus       227 ~~cy~rAI~~~p~n~~~~~ers~L~~~----~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  227 RYCYSRAIQANPSNWELIYERSSLYQK----TGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             HHHHHHHHhcCCcchHHHHHHHHHHHH----hChHHHHHHHHHHHHhhCC
Confidence            88888887654  44455555666654    2267777777777777666

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.97  E-value=5.3  Score=40.23  Aligned_cols=89  Identities=13%  Similarity=0.069  Sum_probs=61.1

Q ss_pred             cCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHccCCCC--CCccCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhccCCCC
Q 018965          111 LQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGG--KNEKDLRAGVALCARAASIG--HVDAVRELGHCLQDGYGVR  186 (348)
Q Consensus       111 ~~d~~~A~~~~~~AA~~G~~~A~~~Lg~~y~~G~g~~--~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~  186 (348)
                      .++..+|++.|.+|.+.-...-...++.+-+.|.+.-  .-.+|+.+|..+++||.+..  .-.|.-.||.+-..    .
T Consensus       475 qqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ----~  550 (606)
T KOG0547|consen  475 QQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQ----R  550 (606)
T ss_pred             HHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHH----H
Confidence            3478899999999998865532222222222221100  01379999999999999875  46688888887654    4


Q ss_pred             CCHHHHHHHHHHHHhcC
Q 018965          187 QNIEKGRRLLIEANARE  203 (348)
Q Consensus       187 ~d~~~A~~w~~~Aa~~G  203 (348)
                      -++.+|+.+|++++..-
T Consensus       551 ~~i~eAielFEksa~lA  567 (606)
T KOG0547|consen  551 GKIDEAIELFEKSAQLA  567 (606)
T ss_pred             hhHHHHHHHHHHHHHHH
Confidence            48999999999998643

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.96  E-value=5.5  Score=40.10  Aligned_cols=114  Identities=18%  Similarity=0.154  Sum_probs=76.9

Q ss_pred             cHHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHH
Q 018965           80 WSDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRA  155 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~  155 (348)
                      ..++....|.+|.+.  .|++-+|.-|+|++ +-++++.|+.=|++|....  ++-++.+|+...+.-       .-+..
T Consensus       375 ~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~f-lL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~-------~k~~~  446 (606)
T KOG0547|consen  375 QSEKMWKDFNKAEDLDPENPDVYYHRGQMRF-LLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQ-------HKIAE  446 (606)
T ss_pred             ccHHHHHHHHHHHhcCCCCCchhHhHHHHHH-HHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHH-------HHHHH
Confidence            366777777777765  47777777777777 6677777777777777665  444555665443321       13566


Q ss_pred             HHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCH
Q 018965          156 GVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFF  205 (348)
Q Consensus       156 A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~  205 (348)
                      ++..|+.+-..  ..++.....|.++.+    .++..+|.+.|.+|.+....
T Consensus       447 ~m~~Fee~kkkFP~~~Evy~~fAeiLtD----qqqFd~A~k~YD~ai~LE~~  494 (606)
T KOG0547|consen  447 SMKTFEEAKKKFPNCPEVYNLFAEILTD----QQQFDKAVKQYDKAIELEPR  494 (606)
T ss_pred             HHHHHHHHHHhCCCCchHHHHHHHHHhh----HHhHHHHHHHHHHHHhhccc
Confidence            66777776654  455555666666665    67888999999999887664

>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51

Probab=87.79  E-value=0.2  Score=34.88  Aligned_cols=35  Identities=23%  Similarity=0.411  Sum_probs=30.1

Q ss_pred             ccccCCCCCceeecChHHHHHhchhhchhcCCCCCC
Q 018965          287 EYRRCSVCGKVNYCSRACQAIDWKTRHKRECVPPLA  322 (348)
Q Consensus       287 ~l~~C~~C~~~~YCs~~CQ~~~W~~~Hk~~C~~~~~  322 (348)
                      .-..|+.|....|||++.=+.|-.. |++.|..++.
T Consensus        13 v~~~Cp~cGipthcS~ehw~~D~e~-H~~~c~~LRq   47 (55)
T PF13824_consen   13 VNFECPDCGIPTHCSEEHWEDDYEE-HRQLCERLRQ   47 (55)
T ss_pred             cCCcCCCCCCcCccCHHHHHHhHHH-HHHHHHHHHH
Confidence            3467999999999999998888886 9999987775

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=87.65  E-value=2.6  Score=30.12  Aligned_cols=51  Identities=10%  Similarity=0.047  Sum_probs=30.4

Q ss_pred             ccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhCC
Q 018965          110 CLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASIG  167 (348)
Q Consensus       110 ~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~G  167 (348)
                      ..+|+++|+++++++...+  ++.+.+.+|.+|..       ..++.+|++.|+++.+.+
T Consensus         7 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~-------~g~~~~A~~~l~~~l~~~   59 (73)
T PF13371_consen    7 QQEDYEEALEVLERALELDPDDPELWLQRARCLFQ-------LGRYEEALEDLERALELS   59 (73)
T ss_pred             hCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHH-------hccHHHHHHHHHHHHHHC
Confidence            4556666666666666553  45566666666643       225666666666666543

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=87.55  E-value=1.8  Score=42.58  Aligned_cols=104  Identities=17%  Similarity=0.094  Sum_probs=72.2

Q ss_pred             HHHCCCH----HHHHHhhhhhhhccCCHHHHHHHHHHH----HhCCC----HHHHHHHHHHHHccCCCCCCccCHHHHHH
Q 018965           91 CVFAGNL----EACYTLGMIRFYCLQNRSSGTSLMAKA----AMKSH----APALYSLAVIQFNGSGGGKNEKDLRAGVA  158 (348)
Q Consensus        91 aA~~G~~----~A~~~Lg~~y~~~~~d~~~A~~~~~~A----A~~G~----~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~  158 (348)
                      |-+-|+-    .|.-+||..|. .-.+.+.|+++|+++    .+.|+    ++.+|.||.-|..       -+++++|+.
T Consensus       225 a~efGDrAaeRRA~sNlgN~hi-flg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytl-------l~e~~kAI~  296 (639)
T KOG1130|consen  225 AQEFGDRAAERRAHSNLGNCHI-FLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTL-------LKEVQKAIT  296 (639)
T ss_pred             HHHhhhHHHHHHhhcccchhhh-hhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHH-------HHHHHHHHH
Confidence            4455554    46678888887 567888999998874    45664    5678999988864       367899999


Q ss_pred             HHHHH----Hh----CCCHHHHHHHHHHHhccCCCCCCHHHHHHHHH----HHHhcCCHH
Q 018965          159 LCARA----AS----IGHVDAVRELGHCLQDGYGVRQNIEKGRRLLI----EANAREFFQ  206 (348)
Q Consensus       159 ~~~kA----A~----~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~----~Aa~~G~~~  206 (348)
                      |+.+=    -+    -|...|+|.||..|..=.    +..+|+++.+    .+-+-++..
T Consensus       297 Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg----~h~kAl~fae~hl~~s~ev~D~s  352 (639)
T KOG1130|consen  297 YHQRHLAIAQELEDRIGELRACWSLGNAFNALG----EHRKALYFAELHLRSSLEVNDTS  352 (639)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHhCCcc
Confidence            98762    22    488899999999986533    3445555544    445555543

>PRK15331 chaperone protein SicA; Provisional

Probab=87.49  E-value=5.9  Score=34.18  Aligned_cols=84  Identities=15%  Similarity=0.109  Sum_probs=65.7

Q ss_pred             ccCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCC
Q 018965          110 CLQNRSSGTSLMAKAAMKSH--APALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVDAVRELGHCLQDGYGV  185 (348)
Q Consensus       110 ~~~d~~~A~~~~~~AA~~G~--~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv  185 (348)
                      ..++.+.|...|+--.-.++  ++=...||.++.       ..+++++|+..|..|+..  .++...|.+|.+|..    
T Consensus        49 ~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q-------~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~----  117 (165)
T PRK15331         49 NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQ-------LKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL----  117 (165)
T ss_pred             HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH----
Confidence            56677788888877776554  444455666664       456899999999999864  789999999999985    


Q ss_pred             CCCHHHHHHHHHHHHhcCC
Q 018965          186 RQNIEKGRRLLIEANAREF  204 (348)
Q Consensus       186 ~~d~~~A~~w~~~Aa~~G~  204 (348)
                      -.|...|+..|..|.++-.
T Consensus       118 l~~~~~A~~~f~~a~~~~~  136 (165)
T PRK15331        118 MRKAAKARQCFELVNERTE  136 (165)
T ss_pred             hCCHHHHHHHHHHHHhCcc
Confidence            5699999999999998533

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=87.29  E-value=1.1  Score=31.59  Aligned_cols=49  Identities=16%  Similarity=0.227  Sum_probs=31.8

Q ss_pred             CHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCC
Q 018965          152 DLRAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREF  204 (348)
Q Consensus       152 d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~  204 (348)
                      |+++|++.|+++...  ++.++.+.|+.+|..    ..++++|..+++++.....
T Consensus         6 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~l~~~~~~~~   56 (68)
T PF14559_consen    6 DYDEAIELLEKALQRNPDNPEARLLLAQCYLK----QGQYDEAEELLERLLKQDP   56 (68)
T ss_dssp             HHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH----TT-HHHHHHHHHCCHGGGT
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCc
Confidence            667777777776543  567777777777665    4567777777776655444

...

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=87.28  E-value=1.8  Score=30.55  Aligned_cols=46  Identities=17%  Similarity=0.156  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK  127 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~  127 (348)
                      .++|+..|+++.+.  +|+++.+.||.+|+ ..++.++|..++++....
T Consensus         7 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    7 YDEAIELLEKALQRNPDNPEARLLLAQCYL-KQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             HHHHHHHHHHHHHHTTTSHHHHHHHHHHHH-HTT-HHHHHHHHHCCHGG
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHH
Confidence            34555555554442  35555555555555 344555555555554443

...

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=86.96  E-value=1.1  Score=27.03  Aligned_cols=28  Identities=29%  Similarity=0.345  Sum_probs=16.0

Q ss_pred             HHHHHhhhhhhhccCCHHHHHHHHHHHHh
Q 018965           98 EACYTLGMIRFYCLQNRSSGTSLMAKAAM  126 (348)
Q Consensus        98 ~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~  126 (348)
                      ++.+++|.+|+ ..++.++|+..|++|.+
T Consensus         2 ~~~~~~g~~~~-~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    2 EAYYNLGNAYF-QLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHH-HTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-HhCCchHHHHHHHHHHH
Confidence            45566666665 45566666666666544

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=86.76  E-value=10  Score=34.95  Aligned_cols=94  Identities=15%  Similarity=0.029  Sum_probs=76.4

Q ss_pred             cCcHHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCH
Q 018965           78 KNWSDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDL  153 (348)
Q Consensus        78 ~~~~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~  153 (348)
                      ......|..-+++++..  .|.++...||.+|. --.+.+.|..-|.+|.+.  +.+....|||+.|.-       .-|.
T Consensus       113 ~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaald-q~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L-------~gd~  184 (257)
T COG5010         113 NGNFGEAVSVLRKAARLAPTDWEAWNLLGAALD-QLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL-------RGDL  184 (257)
T ss_pred             hcchHHHHHHHHHHhccCCCChhhhhHHHHHHH-HccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH-------cCCH
Confidence            33488999999999986  58889999999998 567888899999998875  689999999999863       3388


Q ss_pred             HHHHHHHHHHHhCCC--HHHHHHHHHHH
Q 018965          154 RAGVALCARAASIGH--VDAVRELGHCL  179 (348)
Q Consensus       154 ~~A~~~~~kAA~~G~--~~A~~~Lg~~y  179 (348)
                      +.|..++..|...+.  ...-.+|+...
T Consensus       185 ~~A~~lll~a~l~~~ad~~v~~NLAl~~  212 (257)
T COG5010         185 EDAETLLLPAYLSPAADSRVRQNLALVV  212 (257)
T ss_pred             HHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence            999999999998864  55566676654

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=86.73  E-value=5  Score=33.24  Aligned_cols=76  Identities=18%  Similarity=0.108  Sum_probs=58.7

Q ss_pred             cHHHHHHHHHHHHHCC-CH----HHHHHhhhhhhhccCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHccCCCCCCccCH
Q 018965           80 WSDSAHRFLKRCVFAG-NL----EACYTLGMIRFYCLQNRSSGTSLMAKAAMKS-HAPALYSLAVIQFNGSGGGKNEKDL  153 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~G-~~----~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G-~~~A~~~Lg~~y~~G~g~~~~~~d~  153 (348)
                      ..++|...|+++.+.. ++    .+.+.|+.+++ ..+++++|+..++...... .+.+...+|.+|.. .|      |.
T Consensus        63 ~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~-~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~-~g------~~  134 (145)
T PF09976_consen   63 DYDEAKAALEKALANAPDPELKPLARLRLARILL-QQGQYDEALATLQQIPDEAFKALAAELLGDIYLA-QG------DY  134 (145)
T ss_pred             CHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHH-CC------CH
Confidence            3789999999999876 33    47788888887 6789999999997754333 34577788888864 34      78


Q ss_pred             HHHHHHHHHH
Q 018965          154 RAGVALCARA  163 (348)
Q Consensus       154 ~~A~~~~~kA  163 (348)
                      ++|..-|++|
T Consensus       135 ~~A~~~y~~A  144 (145)
T PF09976_consen  135 DEARAAYQKA  144 (145)
T ss_pred             HHHHHHHHHh
Confidence            9999999887

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=86.44  E-value=5.3  Score=40.77  Aligned_cols=91  Identities=15%  Similarity=0.116  Sum_probs=68.5

Q ss_pred             HHHHhhhhhhhccCCHHHHHHHHHHHHhC-------CCHH---HHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHh---
Q 018965           99 ACYTLGMIRFYCLQNRSSGTSLMAKAAMK-------SHAP---ALYSLAVIQFNGSGGGKNEKDLRAGVALCARAAS---  165 (348)
Q Consensus        99 A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~-------G~~~---A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~---  165 (348)
                      ....|+.+|. ...++++|+.+++.|.+.       .|+.   .+-.+|.+|..       ...+.+|+..|++|-.   
T Consensus       201 ~~~~La~~y~-~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~-------~~k~~eAv~ly~~AL~i~e  272 (508)
T KOG1840|consen  201 TLRNLAEMYA-VQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRS-------LGKYDEAVNLYEEALTIRE  272 (508)
T ss_pred             HHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHH-------hccHHHHHHHHHHHHHHHH
Confidence            4556888887 788999999999999988       5543   44458999963       3468999999999865   


Q ss_pred             --CC--C---HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965          166 --IG--H---VDAVRELGHCLQDGYGVRQNIEKGRRLLIEANA  201 (348)
Q Consensus       166 --~G--~---~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~  201 (348)
                        .|  |   +..+.+|+.+|..    ..+..+|..++++|.+
T Consensus       273 ~~~G~~h~~va~~l~nLa~ly~~----~GKf~EA~~~~e~Al~  311 (508)
T KOG1840|consen  273 EVFGEDHPAVAATLNNLAVLYYK----QGKFAEAEEYCERALE  311 (508)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHhc----cCChHHHHHHHHHHHH
Confidence              23  2   3477889999843    4578888888888753

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=86.35  E-value=5.3  Score=35.59  Aligned_cols=91  Identities=14%  Similarity=0.133  Sum_probs=65.6

Q ss_pred             HHHHHHCCCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHH
Q 018965           88 LKRCVFAGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS---HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAA  164 (348)
Q Consensus        88 ~~kaA~~G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G---~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA  164 (348)
                      .+.-....+|...|     |.-..-+.+.|+.-|.++..++   +++-|+.||..|        +.+|..|+..+|.++-
T Consensus       101 ~~~tk~S~dP~llY-----y~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY--------~krD~~Kt~~ll~~~L  167 (203)
T PF11207_consen  101 QEETKNSQDPYLLY-----YHWSRFGDQEALRRFLQLEGTPELETAELQYALATYY--------TKRDPEKTIQLLLRAL  167 (203)
T ss_pred             HHHHccCCCccHHH-----HHhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHH--------HccCHHHHHHHHHHHH
Confidence            33344445665433     1124446677888887777666   789999999999        6789999999999997


Q ss_pred             hC---C---CHHHHHHHHHHHhccCCCCCCHHHHHHH
Q 018965          165 SI---G---HVDAVRELGHCLQDGYGVRQNIEKGRRL  195 (348)
Q Consensus       165 ~~---G---~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w  195 (348)
                      +.   +   |++-...|+.+|..    .++.++|.-|
T Consensus       168 ~l~~~~~~~n~eil~sLas~~~~----~~~~e~AYiw  200 (203)
T PF11207_consen  168 ELSNPDDNFNPEILKSLASIYQK----LKNYEQAYIW  200 (203)
T ss_pred             HhcCCCCCCCHHHHHHHHHHHHH----hcchhhhhhh
Confidence            64   2   57788888888875    5677777766

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=86.03  E-value=14  Score=33.86  Aligned_cols=76  Identities=11%  Similarity=0.012  Sum_probs=54.1

Q ss_pred             CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--C---HHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC----
Q 018965           96 NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--H---APALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI----  166 (348)
Q Consensus        96 ~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~---~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~----  166 (348)
                      +++..|..|.-++ ..+|.++|+..|++....-  .   ..|++.||..|..       ..|+.+|..+|++..+.    
T Consensus        31 ~~~~~Y~~A~~~~-~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~-------~~~y~~A~~~~e~fi~~~P~~  102 (243)
T PRK10866         31 PPSEIYATAQQKL-QDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK-------NADLPLAQAAIDRFIRLNPTH  102 (243)
T ss_pred             CHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh-------cCCHHHHHHHHHHHHHhCcCC
Confidence            4444555555555 5678888888888887652  2   2456888888864       34789999999998875    


Q ss_pred             -CCHHHHHHHHHHH
Q 018965          167 -GHVDAVRELGHCL  179 (348)
Q Consensus       167 -G~~~A~~~Lg~~y  179 (348)
                       ..+.|+|.+|..+
T Consensus       103 ~~~~~a~Y~~g~~~  116 (243)
T PRK10866        103 PNIDYVLYMRGLTN  116 (243)
T ss_pred             CchHHHHHHHHHhh
Confidence             4567889998763

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=85.88  E-value=4.3  Score=44.07  Aligned_cols=126  Identities=17%  Similarity=0.067  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      ++++++-.+|+.+.  +|..|++.||..+...++|.++|.+-|..||+..  +.-|.--|+.+|.. ..   .--+..++
T Consensus        18 YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~-~~---dIl~ld~~   93 (1238)
T KOG1127|consen   18 YEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYER-YN---DILDLDRA   93 (1238)
T ss_pred             HHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHc-cc---hhhhhhHh
Confidence            78899998888764  6889999999999888899999999999999874  56688889999976 22   34578889


Q ss_pred             HHHHHHHHhCCCHHH---HHHHHHHHhcc-CCCCCCHHHHHHHHHHHHhcCCHHHHHh
Q 018965          157 VALCARAASIGHVDA---VRELGHCLQDG-YGVRQNIEKGRRLLIEANAREFFQSVSK  210 (348)
Q Consensus       157 ~~~~~kAA~~G~~~A---~~~Lg~~y~~G-~Gv~~d~~~A~~w~~~Aa~~G~~~A~~~  210 (348)
                      ...|.+++..-..+.   .-.|-.-|-+- .-..+-...|..|-+.+.-..+..+++.
T Consensus        94 ~~~yq~~~l~le~q~~nk~~~lcKk~~d~~~~fk~hll~a~eigei~~trq~~se~N~  151 (1238)
T KOG1127|consen   94 AKCYQRAVLILENQSKNKGEALCKKFDDQYYQFKKHLLVAKEIGEIAVTRQDASEKNP  151 (1238)
T ss_pred             HHHHHHHHHhhhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHhchHhhhhhCH
Confidence            999998876532222   11111111110 1122223336666666666555555544

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=85.84  E-value=2  Score=25.71  Aligned_cols=28  Identities=21%  Similarity=0.152  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965          170 DAVRELGHCLQDGYGVRQNIEKGRRLLIEANA  201 (348)
Q Consensus       170 ~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~  201 (348)
                      .+.+.||.+|..    ..+.++|+++|++|.+
T Consensus         2 ~~~~~lg~~~~~----~~~~~~A~~~~~~al~   29 (34)
T PF07719_consen    2 EAWYYLGQAYYQ----LGNYEEAIEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHH----TT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH----hCCHHHHHHHHHHHHH
Confidence            456677776665    5577777777777764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=85.62  E-value=9.5  Score=31.91  Aligned_cols=88  Identities=14%  Similarity=-0.008  Sum_probs=43.5

Q ss_pred             CCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhCCC----H--HHHHHHHHHHhccC
Q 018965          112 QNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASIGH----V--DAVRELGHCLQDGY  183 (348)
Q Consensus       112 ~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~G~----~--~A~~~Lg~~y~~G~  183 (348)
                      .+.+.|++.|.+|...-  .+.|+.+=+..|..       ..|+++|++=+.+|.+.-.    +  .|...-|.+|+.  
T Consensus        57 g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RL-------q~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl--  127 (175)
T KOG4555|consen   57 GDLDGALELFGQALCLAPERASAYNNRAQALRL-------QGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL--  127 (175)
T ss_pred             cchHHHHHHHHHHHHhcccchHhhccHHHHHHH-------cCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH--
Confidence            34455555555555442  34455555554431       2244555555555554311    1  133344555543  


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHh
Q 018965          184 GVRQNIEKGRRLLIEANAREFFQSVSK  210 (348)
Q Consensus       184 Gv~~d~~~A~~w~~~Aa~~G~~~A~~~  210 (348)
                        .-|.+.|+.=|+.||+.|.+.|...
T Consensus       128 --~g~dd~AR~DFe~AA~LGS~FAr~Q  152 (175)
T KOG4555|consen  128 --LGNDDAARADFEAAAQLGSKFAREQ  152 (175)
T ss_pred             --hCchHHHHHhHHHHHHhCCHHHHHH
Confidence              2355566666666666666666554

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=85.40  E-value=15  Score=36.35  Aligned_cols=101  Identities=14%  Similarity=0.205  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHHHH
Q 018965           81 SDSAHRFLKRCVFAGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAGVA  158 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~  158 (348)
                      .+.|..+|++..+. +|+..+.|+.+++ ...+..+|++++.++....  +.......+..+..       ..+++.|+.
T Consensus       185 ~~~ai~lle~L~~~-~pev~~~LA~v~l-~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~-------k~~~~lAL~  255 (395)
T PF09295_consen  185 YDEAIELLEKLRER-DPEVAVLLARVYL-LMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS-------KKKYELALE  255 (395)
T ss_pred             HHHHHHHHHHHHhc-CCcHHHHHHHHHH-hcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-------cCCHHHHHH
Confidence            68899999997655 4889999999998 3456789999999999754  45555555666643       236799999


Q ss_pred             HHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHH
Q 018965          159 LCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRR  194 (348)
Q Consensus       159 ~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~  194 (348)
                      ..++|.+.  .+....+.|+.+|..    ..|.+.|+.
T Consensus       256 iAk~av~lsP~~f~~W~~La~~Yi~----~~d~e~ALl  289 (395)
T PF09295_consen  256 IAKKAVELSPSEFETWYQLAECYIQ----LGDFENALL  289 (395)
T ss_pred             HHHHHHHhCchhHHHHHHHHHHHHh----cCCHHHHHH
Confidence            99999987  567899999999975    457777764

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=85.16  E-value=19  Score=38.21  Aligned_cols=114  Identities=16%  Similarity=0.132  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHHHCC--CHHHHHHhhhhhhhccCCHHHHHHHHHHH--HhCCCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFAG--NLEACYTLGMIRFYCLQNRSSGTSLMAKA--AMKSHAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G--~~~A~~~Lg~~y~~~~~d~~~A~~~~~~A--A~~G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .+++...+..|...-  .+..+|..|.++. +.+...+|.+-|.-|  .+-+|++++..||.+|..+..     +.....
T Consensus       666 ~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~-~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~-----~~la~~  739 (799)
T KOG4162|consen  666 DDEARSCLLEASKIDPLSASVYYLRGLLLE-VKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGS-----PRLAEK  739 (799)
T ss_pred             chHHHHHHHHHHhcchhhHHHHHHhhHHHH-HHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-----cchHHH
Confidence            455555555554433  2345677788877 677788888888665  466799999999999987531     234444


Q ss_pred             HHHHHHHHhCC--CHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCC
Q 018965          157 VALCARAASIG--HVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREF  204 (348)
Q Consensus       157 ~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~  204 (348)
                      ...+..|.+.+  +.+|-|+||.++..    .-|..+|...|.-|.+...
T Consensus       740 ~~~L~dalr~dp~n~eaW~~LG~v~k~----~Gd~~~Aaecf~aa~qLe~  785 (799)
T KOG4162|consen  740 RSLLSDALRLDPLNHEAWYYLGEVFKK----LGDSKQAAECFQAALQLEE  785 (799)
T ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHH----ccchHHHHHHHHHHHhhcc
Confidence            45888888875  89999999998875    3478899999998876443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=84.78  E-value=1.4  Score=27.41  Aligned_cols=24  Identities=17%  Similarity=0.072  Sum_probs=13.1

Q ss_pred             HHHhhhhhhhccCCHHHHHHHHHHH
Q 018965          100 CYTLGMIRFYCLQNRSSGTSLMAKA  124 (348)
Q Consensus       100 ~~~Lg~~y~~~~~d~~~A~~~~~~A  124 (348)
                      +.+||.+|. ..+|+++|+.+|++|
T Consensus         2 l~~Lg~~~~-~~g~~~~Ai~~y~~a   25 (36)
T PF13176_consen    2 LNNLGRIYR-QQGDYEKAIEYYEQA   25 (36)
T ss_dssp             HHHHHHHHH-HCT-HHHHHHHHHHH
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHH
Confidence            445555555 455666666666663

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=83.91  E-value=5.4  Score=34.96  Aligned_cols=60  Identities=12%  Similarity=0.039  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHC--CCHHHHHHhhhhhh--hccCC-------HHHHHHHHHHHHh--CCCHHHHHHHHHHHH
Q 018965           82 DSAHRFLKRCVFA--GNLEACYTLGMIRF--YCLQN-------RSSGTSLMAKAAM--KSHAPALYSLAVIQF  141 (348)
Q Consensus        82 ~~A~~~~~kaA~~--G~~~A~~~Lg~~y~--~~~~d-------~~~A~~~~~~AA~--~G~~~A~~~Lg~~y~  141 (348)
                      +.|.+-++.....  -|+++.++-|..++  ..-++       .++|+.=|+.|..  -...+|.+.||..|.
T Consensus         8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~t   80 (186)
T PF06552_consen    8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYT   80 (186)
T ss_dssp             HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence            4455555553333  45667777776655  11222       3344444554443  246778888888774

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=83.07  E-value=0.98  Score=27.96  Aligned_cols=14  Identities=29%  Similarity=0.309  Sum_probs=7.2

Q ss_pred             CCHHHHHHhhhhhh
Q 018965           95 GNLEACYTLGMIRF  108 (348)
Q Consensus        95 G~~~A~~~Lg~~y~  108 (348)
                      .|+++.++||.+|.
T Consensus        11 ~n~~a~~nla~~~~   24 (34)
T PF13431_consen   11 NNAEAYNNLANLYL   24 (34)
T ss_pred             CCHHHHHHHHHHHH
Confidence            35555555555554

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=81.92  E-value=5  Score=38.52  Aligned_cols=118  Identities=14%  Similarity=0.096  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .+.|+++|+..+++  .|.+|.--+|.-|+ -..+++.|+.||++--..|  +++-..++|.|.+-+.-       ++-+
T Consensus       306 ~~~a~~lYk~vlk~~~~nvEaiAcia~~yf-Y~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ-------~D~~  377 (478)
T KOG1129|consen  306 QEDALQLYKLVLKLHPINVEAIACIAVGYF-YDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQ-------IDLV  377 (478)
T ss_pred             HHHHHHHHHHHHhcCCccceeeeeeeeccc-cCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcc-------hhhh
Confidence            67788888887775  46777666666666 4677888888888888888  67777788888765533       3445


Q ss_pred             HHHHHHHHh---C-C-CHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh--cCCHHHHHh
Q 018965          157 VALCARAAS---I-G-HVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANA--REFFQSVSK  210 (348)
Q Consensus       157 ~~~~~kAA~---~-G-~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~--~G~~~A~~~  210 (348)
                      +.-|++|-.   + | -.+--|+||.+.- +   .-|...|.+.|+.|--  ..|.+|.++
T Consensus       378 L~sf~RAlstat~~~~aaDvWYNlg~vaV-~---iGD~nlA~rcfrlaL~~d~~h~ealnN  434 (478)
T KOG1129|consen  378 LPSFQRALSTATQPGQAADVWYNLGFVAV-T---IGDFNLAKRCFRLALTSDAQHGEALNN  434 (478)
T ss_pred             HHHHHHHHhhccCcchhhhhhhccceeEE-e---ccchHHHHHHHHHHhccCcchHHHHHh
Confidence            555655532   2 1 2445677765432 2   2377888888888754  345566665

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.61  E-value=45  Score=31.00  Aligned_cols=116  Identities=14%  Similarity=0.033  Sum_probs=74.3

Q ss_pred             cHHHHHHHHHHHHHCCCHHHHHHhhhhhh--hccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHHccCCCCCCccCHHH
Q 018965           80 WSDSAHRFLKRCVFAGNLEACYTLGMIRF--YCLQNRSSGTSLMAKAAM--KSHAPALYSLAVIQFNGSGGGKNEKDLRA  155 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~G~~~A~~~Lg~~y~--~~~~d~~~A~~~~~~AA~--~G~~~A~~~Lg~~y~~G~g~~~~~~d~~~  155 (348)
                      ..++|.++|..-.+..-.+.-..-=.+-.  ...++ ..|++-+..=-+  .++.+|...|+.+|..       ..++++
T Consensus       101 ~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~-l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~-------~~~f~k  172 (289)
T KOG3060|consen  101 NYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKN-LEAIKELNEYLDKFMNDQEAWHELAEIYLS-------EGDFEK  172 (289)
T ss_pred             chhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-------HhHHHH
Confidence            37788899888776654333332222211  11222 234433322222  4799999999999973       458999


Q ss_pred             HHHHHHHHHhCC--CHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCC
Q 018965          156 GVALCARAASIG--HVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREF  204 (348)
Q Consensus       156 A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~  204 (348)
                      |..+|+.-.-.-  ++--.-.||..+..-.| ..|++-|+++|.+|.+...
T Consensus       173 A~fClEE~ll~~P~n~l~f~rlae~~Yt~gg-~eN~~~arkyy~~alkl~~  222 (289)
T KOG3060|consen  173 AAFCLEELLLIQPFNPLYFQRLAEVLYTQGG-AENLELARKYYERALKLNP  222 (289)
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHhCh
Confidence            999999877543  33344467776655444 5699999999999988765

>PLN03218 maturation of RBCL 1; Provisional

Probab=81.50  E-value=85  Score=35.29  Aligned_cols=49  Identities=14%  Similarity=0.135  Sum_probs=25.1

Q ss_pred             CHHHHHHHHHHHHhCCC---HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCC
Q 018965          152 DLRAGVALCARAASIGH---VDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREF  204 (348)
Q Consensus       152 d~~~A~~~~~kAA~~G~---~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~  204 (348)
                      +.++|.++|....+.|.   ......|..    +.+-..+.++|...|....+.|.
T Consensus       629 ~~deAl~lf~eM~~~Gv~PD~~TynsLI~----a~~k~G~~eeA~~l~~eM~k~G~  680 (1060)
T PLN03218        629 DWDFALSIYDDMKKKGVKPDEVFFSALVD----VAGHAGDLDKAFEILQDARKQGI  680 (1060)
T ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHH----HHHhCCCHHHHHHHHHHHHHcCC
Confidence            44555555555555442   112222222    22234567777777777777664

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=80.74  E-value=23  Score=29.68  Aligned_cols=90  Identities=14%  Similarity=-0.027  Sum_probs=75.8

Q ss_pred             cHHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCCCH------HHHHHHHHHHHccCCCCCCcc
Q 018965           80 WSDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKSHA------PALYSLAVIQFNGSGGGKNEK  151 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G~~------~A~~~Lg~~y~~G~g~~~~~~  151 (348)
                      ..+.|++.|.++...  .++.|+.+-++.|. ..++.++|++=+.+|.+.-.+      +|..+=|.+|.       ..-
T Consensus        58 ~Ld~AlE~F~qal~l~P~raSayNNRAQa~R-Lq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR-------l~g  129 (175)
T KOG4555|consen   58 DLDGALELFGQALCLAPERASAYNNRAQALR-LQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR-------LLG  129 (175)
T ss_pred             chHHHHHHHHHHHHhcccchHhhccHHHHHH-HcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH-------HhC
Confidence            378999999999886  48889999999988 899999999999999987543      46677788885       456


Q ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHH
Q 018965          152 DLRAGVALCARAASIGHVDAVRELGH  177 (348)
Q Consensus       152 d~~~A~~~~~kAA~~G~~~A~~~Lg~  177 (348)
                      |.++|..=|+.||+.|++.|-..|-.
T Consensus       130 ~dd~AR~DFe~AA~LGS~FAr~QLV~  155 (175)
T KOG4555|consen  130 NDDAARADFEAAAQLGSKFAREQLVE  155 (175)
T ss_pred             chHHHHHhHHHHHHhCCHHHHHHHHh
Confidence            78899999999999999999887743

>PLN02789 farnesyltranstransferase

Probab=80.47  E-value=37  Score=32.47  Aligned_cols=95  Identities=13%  Similarity=0.028  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcc--CCCCCCccCHHHHH
Q 018965           84 AHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNG--SGGGKNEKDLRAGV  157 (348)
Q Consensus        84 A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G--~g~~~~~~d~~~A~  157 (348)
                      ++.++.++.+.  .|..|.+..|.++. .-++.+++++++.++.+.  .+..|.+..+.++...  .|+  .....+..+
T Consensus       127 el~~~~kal~~dpkNy~AW~~R~w~l~-~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~--~~~~~e~el  203 (320)
T PLN02789        127 ELEFTRKILSLDAKNYHAWSHRQWVLR-TLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGG--LEAMRDSEL  203 (320)
T ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccc--ccccHHHHH
Confidence            34444444332  24444444444433 223355555555555543  2455555555554332  011  222334455


Q ss_pred             HHHHHHHhC--CCHHHHHHHHHHHhc
Q 018965          158 ALCARAASI--GHVDAVRELGHCLQD  181 (348)
Q Consensus       158 ~~~~kAA~~--G~~~A~~~Lg~~y~~  181 (348)
                      .+..++...  .|..|-++++.+|..
T Consensus       204 ~y~~~aI~~~P~N~SaW~Yl~~ll~~  229 (320)
T PLN02789        204 KYTIDAILANPRNESPWRYLRGLFKD  229 (320)
T ss_pred             HHHHHHHHhCCCCcCHHHHHHHHHhc
Confidence            555555533  445555555555544

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=80.12  E-value=7.9  Score=33.92  Aligned_cols=90  Identities=14%  Similarity=0.110  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCC---CccCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhc-cCCCC
Q 018965          115 SSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGK---NEKDLRAGVALCARAAS--IGHVDAVRELGHCLQD-GYGVR  186 (348)
Q Consensus       115 ~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~---~~~d~~~A~~~~~kAA~--~G~~~A~~~Lg~~y~~-G~Gv~  186 (348)
                      +.|.+-++......  ++++.++.|..++.=.-...   ..+=+++|+.=|+.|-.  -...+|.+.||..|.. |. ..
T Consensus         8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~-l~   86 (186)
T PF06552_consen    8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF-LT   86 (186)
T ss_dssp             HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH-H-
T ss_pred             HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh-hc
Confidence            45566666544443  67888998877754311000   01124555555666554  4678999999997743 43 23


Q ss_pred             CCH-------HHHHHHHHHHHhcCCH
Q 018965          187 QNI-------EKGRRLLIEANAREFF  205 (348)
Q Consensus       187 ~d~-------~~A~~w~~~Aa~~G~~  205 (348)
                      .|.       ++|..+|++|.+..-.
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~  112 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPN  112 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCC
Confidence            344       4455555555544443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=80.07  E-value=3.3  Score=24.83  Aligned_cols=26  Identities=31%  Similarity=0.316  Sum_probs=13.3

Q ss_pred             HHHHhhhhhhhccCCHHHHHHHHHHHH
Q 018965           99 ACYTLGMIRFYCLQNRSSGTSLMAKAA  125 (348)
Q Consensus        99 A~~~Lg~~y~~~~~d~~~A~~~~~~AA  125 (348)
                      +.+.+|.+|. ..+|.++|++.|+++.
T Consensus         3 ~~~~lg~~y~-~~~~~~~A~~~~~~a~   28 (34)
T PF13181_consen    3 AYYNLGKIYE-QLGDYEEALEYFEKAL   28 (34)
T ss_dssp             HHHHHHHHHH-HTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-HcCCHHHHHHHHHHHH
Confidence            4455555554 3445555555555543

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	348
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	2e-12
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	3e-09
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	2e-05
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	3e-12
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	3e-12
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	3e-12
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	4e-12
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	2e-11
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	2e-11
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	6e-11
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	2e-05
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	4e-12
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	6e-12
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	7e-12
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	1e-11
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	1e-08
2dj8_A	60	Protein CBFA2T1; zinc finger MYND domain, protein	3e-10
1klx_A	138	Cysteine rich protein B; structural genomics, heli	5e-10
1klx_A	138	Cysteine rich protein B; structural genomics, heli	5e-06
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	6e-10
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	1e-09
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	5e-09
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	1e-07
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	3e-07
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	2e-06
2odd_A	64	Protein CBFA2T1; MYND zinc finger, cross-braced to	6e-10
2jw6_A	52	Deformed epidermal autoregulatory factor 1 homolo;	1e-09
2od1_A	60	Protein CBFA2T1; zinc finger, cross-braced topolog	1e-09
2d8q_A	70	BLU protein, zinc finger MYND domain containing pr	3e-09
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	4e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	9e-04

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212

 Score = 64.6 bits (158), Expect = 2e-12
 Identities = 21/106 (19%), Positives = 33/106 (31%), Gaps = 5/106 (4%)

Query: 94  AGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGGKNEKDL 153
           AG+  A Y L    +    +         KAA +    AL  LA ++         + D 
Sbjct: 15  AGDRRAQYYLADT-WVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIRNPQ----QADY 69

Query: 154 RAGVALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEA 199
                L  +A   G       L   L +      ++     LL +A
Sbjct: 70  PQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDA 115

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212

 Score = 55.3 bits (134), Expect = 3e-09
 Identities = 20/113 (17%), Positives = 31/113 (27%), Gaps = 13/113 (11%)

Query: 95  GNLEACYTLGMIRFYCL----QNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGGKNE 150
           G+ +A   L  +          +      L  KA           LA +  N   G    
Sbjct: 48  GDGDALALLAQL--KIRNPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAG---A 102

Query: 151 KDLRAGVALCARAASIGHVDAVRE----LGHCLQDGYGVRQNIEKGRRLLIEA 199
            D+   + L   AA     DA  +    LG     G    ++  K       +
Sbjct: 103 TDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 8/77 (10%)

Query: 123 KAAMKSHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASIGHVDAVRELGHCLQDG 182
           + A      A Y LA    +         D +       +AA+ G  DA+  L       
Sbjct: 11  QQAEAGDRRAQYYLADTWVSS-------GDYQKAEYWAQKAAAQGDGDALALLAQLKIRN 63

Query: 183 YGVRQNIEKGRRLLIEA 199
              + +  + R+L  +A
Sbjct: 64  -PQQADYPQARQLAEKA 79

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490

 Score = 66.1 bits (162), Expect = 3e-12
 Identities = 28/119 (23%), Positives = 44/119 (36%), Gaps = 6/119 (5%)

Query: 84  AHRFLKRCVFAGNLEACYTLGMIRFYCL---QNRSSGTSLMAKAAMKSHAPALYSLAVIQ 140
           A  + +R    G   A Y LG+         Q+ +       KAA+K    A  +L V+ 
Sbjct: 62  AMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMY 121

Query: 141 FNGSGGGKNEKDLRAGVALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEA 199
             G+G    + D    V     AA  G     + +G    +G GV ++    R    +A
Sbjct: 122 HEGNGV---KVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKA 177

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490

 Score = 66.1 bits (162), Expect = 3e-12
 Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 6/121 (4%)

Query: 82  DSAHRFLKRCVFAGNLEACYTLGMIRFY---CLQNRSSGTSLMAKAAMKSHAPALYSLAV 138
           +     LK+   +G  +A   LG   F      ++ +       +AA + + PA Y L +
Sbjct: 24  NVNLEQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGL 83

Query: 139 IQFNGSGGGKNEKDLRAGVALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIE 198
              NG G     +D    V    +AA  G   A + LG    +G GV+ +  +  +    
Sbjct: 84  RYMNGEGV---PQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRL 140

Query: 199 A 199
           A
Sbjct: 141 A 141

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490

 Score = 66.1 bits (162), Expect = 3e-12
 Identities = 27/118 (22%), Positives = 40/118 (33%), Gaps = 5/118 (4%)

Query: 84  AHRFLKRCVFAGNLEACYTLGMI--RFYCLQNRSSGTSLMAKAAMKSHAPALYSLAVIQF 141
           A  +  +    G+  A   LG I  R    +          KAA K    A ++L     
Sbjct: 315 AISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALL 374

Query: 142 NGSGGGKNEKDLRAGVALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEA 199
            G G    +KD +       +AA  G   A  +LG     G GV ++  +       A
Sbjct: 375 QGKGV---KKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTA 429

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490

 Score = 65.8 bits (161), Expect = 4e-12
 Identities = 21/110 (19%), Positives = 44/110 (40%), Gaps = 7/110 (6%)

Query: 94  AGNLEACYTLGMIRFY---CLQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGGKNE 150
           +G+      L  + ++     Q+ +    L +++A + ++ A + L  I   G  G    
Sbjct: 216 SGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAG---A 272

Query: 151 KDLRAGVALCARAASIGHVDAVRELGHCLQDGY-GVRQNIEKGRRLLIEA 199
           K+    +    ++A  G+ D    L H    G  GV +N E+      ++
Sbjct: 273 KEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKS 322

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490

 Score = 63.8 bits (156), Expect = 2e-11
 Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 6/119 (5%)

Query: 84  AHRFLKRCVFAGNLEACYTLGMIRFY---CLQNRSSGTSLMAKAAMKSHAPALYSLAVIQ 140
           A  +  +    GN+ +C  LG +        +N +       K+A          LA + 
Sbjct: 170 AREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMY 229

Query: 141 FNGSGGGKNEKDLRAGVALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEA 199
           + G G     +D      L +++A  G+  A   LG+ L+ G    +   K      ++
Sbjct: 230 YFGIGV---TQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKS 285

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490

 Score = 63.8 bits (156), Expect = 2e-11
 Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 8/120 (6%)

Query: 84  AHRFLKRCVFAGNLEACYTLGMIRFY----CLQNRSSGTSLMAKAAMKSHAPALYSLAVI 139
           A  + ++    GN +  Y L  +         +NR    S   K+A +  A A  +L  I
Sbjct: 278 ALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAI 337

Query: 140 QFNGSGGGKNEKDLRAGVALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEA 199
            F       +E++ +  V    +AA+ G   A   LG+ L  G GV+++ ++    + +A
Sbjct: 338 YF----RLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKA 393

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490

 Score = 62.3 bits (152), Expect = 6e-11
 Identities = 19/109 (17%), Positives = 37/109 (33%), Gaps = 6/109 (5%)

Query: 94  AGNLEACYTLGMIRFY---CLQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGGKNE 150
            G      ++G   F      ++        +KAA + +  +   L  +   G G    E
Sbjct: 144 QGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGV---E 200

Query: 151 KDLRAGVALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEA 199
           ++         ++A+ G       L      G GV Q+  + R L  ++
Sbjct: 201 RNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQS 249

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 12/74 (16%), Positives = 20/74 (27%), Gaps = 5/74 (6%)

Query: 126 MKSHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASIGHVDAVRELGHCLQDGYGV 185
           MK    A+       F               +    + A  G   A  ELG+    G   
Sbjct: 1   MKKSLLAVMLTG--LFALVS---LPALGNVNLEQLKQKAESGEAKAQLELGYRYFQGNET 55

Query: 186 RQNIEKGRRLLIEA 199
            +++ +       A
Sbjct: 56  TKDLTQAMDWFRRA 69

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273

 Score = 64.5 bits (158), Expect = 4e-12
 Identities = 17/108 (15%), Positives = 40/108 (37%), Gaps = 6/108 (5%)

Query: 95  GNLEACYTLGMIRFY---CLQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGGKNEK 151
            + + C  LG +        ++     +   KA     +P  ++   +  +G G     K
Sbjct: 144 NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGA---TK 200

Query: 152 DLRAGVALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEA 199
           + +  +A  ++A  + +      LG    +G GV +N ++      + 
Sbjct: 201 NFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKG 248

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273

 Score = 64.1 bits (157), Expect = 6e-12
 Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 4/105 (3%)

Query: 95  GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGGKNEKDLR 154
            + +    LG  + Y  ++ +       KA         ++L V+ + G G    EK+L+
Sbjct: 4   QDPKELVGLG-AKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGV---EKNLK 59

Query: 155 AGVALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEA 199
              +  A+A  + + +    LG+    G GV QN  K  +   +A
Sbjct: 60  KAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKA 104

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273

 Score = 63.8 bits (156), Expect = 7e-12
 Identities = 24/127 (18%), Positives = 52/127 (40%), Gaps = 7/127 (5%)

Query: 76  KAKNWSDSAHRFLKRCVFAGNLEACYTLGMIRFYCL---QNRSSGTSLMAKAAMKSHAPA 132
           K K+++ +   F K C        C+ LG++ +      +N     S  AKA   +++  
Sbjct: 18  KEKDFTQAKKYFEKACD-LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNG 76

Query: 133 LYSLAVIQFNGSGGGKNEKDLRAGVALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKG 192
            + L  + ++G G     ++    +   ++A  + + +    LG    DG  V ++ +K 
Sbjct: 77  CHLLGNLYYSGQGV---SQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKA 133

Query: 193 RRLLIEA 199
                +A
Sbjct: 134 VEYFTKA 140

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273

 Score = 63.4 bits (155), Expect = 1e-11
 Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 6/108 (5%)

Query: 95  GNLEACYTLGMIRFY---CLQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGGKNEK 151
                C+ LG + +      QN +      +KA    +A    SL  I  +G       +
Sbjct: 72  NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVV---TR 128

Query: 152 DLRAGVALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEA 199
           D +  V    +A  +   D    LG     G G  ++++K      +A
Sbjct: 129 DFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKA 176

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273

 Score = 54.5 bits (132), Expect = 1e-08
 Identities = 13/97 (13%), Positives = 33/97 (34%), Gaps = 6/97 (6%)

Query: 95  GNLEACYTLGMIRFY---CLQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGGKNEK 151
            +   C+  G +  +     +N     +  +KA    +    ++L  +Q+NG G     +
Sbjct: 180 KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGV---TR 236

Query: 152 DLRAGVALCARAASIGHVDAVRELGHCLQDGYGVRQN 188
           + +  +    +   +G   A   L       +    +
Sbjct: 237 NEKQAIENFKKGCKLGAKGACDILKQLKIKVHHHHHH 273

>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1 Length = 60

 Score = 54.6 bits (131), Expect = 3e-10
 Identities = 18/61 (29%), Positives = 23/61 (37%), Gaps = 8/61 (13%)

Query: 260 ESGVSDLGNGLRLCSYSGCGRPETRVHEYRRCSVCGKVNYCSRACQAIDWKTRHKRECVP 319
            SG++   +    C    CGR  +       CS C    YC   CQ  DW+  H   C  
Sbjct: 5   SSGINQQEDSSESCW--NCGRKASE-----TCSGCNTARYCGSFCQHKDWEK-HHHICSG 56

Query: 320 P 320
           P
Sbjct: 57  P 57

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Length = 138

 Score = 55.9 bits (136), Expect = 5e-10
 Identities = 26/132 (19%), Positives = 46/132 (34%), Gaps = 24/132 (18%)

Query: 76  KAKNWSDSAHRFLKRCVFAGNLEACYTLG-MIRFYCLQNRSSGTSLMAKAAMKSHAPALY 134
           KA  +      ++K C     +  C +L    +     N+      ++KA   +      
Sbjct: 13  KAIQY------YVKACE-LNEMFGCLSLVSNSQ----INKQKLFQYLSKACELNSGNGCR 61

Query: 135 SLAVIQFNGSGGGKNEKDLRAGVALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRR 194
            L     NG      +KDLR      ++A  +   D    LG+    G GV +N ++   
Sbjct: 62  FLGDFYENGKYV---KKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQ--- 115

Query: 195 LLIEANAREFFQ 206
                 A + F+
Sbjct: 116 ------AVKTFE 121

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Length = 138

 Score = 44.4 bits (106), Expect = 5e-06
 Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 10/88 (11%)

Query: 95  GNLEACYTLGMIRFYCL-----QNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGGKN 149
            +   C  LG   FY       ++        +KA   +       L   Q+ G G    
Sbjct: 55  NSGNGCRFLGD--FYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGV--- 109

Query: 150 EKDLRAGVALCARAASIGHVDAVRELGH 177
            K+ +  V    +A  +G  DA   L +
Sbjct: 110 VKNEKQAVKTFEKACRLGSEDACGILNN 137

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452

 Score = 59.4 bits (144), Expect = 6e-10
 Identities = 17/121 (14%), Positives = 38/121 (31%), Gaps = 10/121 (8%)

Query: 84  AHRFLKRCVFAGNLEACYTLGMIRFY-----CLQNRSSGTSLMAKAAMKSHAPALYSLAV 138
             + ++  V  G + A     + R          +  +  +L+ K A   +  +  SLA 
Sbjct: 198 LLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGYPASWVSLAQ 256

Query: 139 IQFNGSGGGKNEKDLRAGVALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIE 198
           + ++         D+   +       +     A   LG    +G  V  + +       +
Sbjct: 257 LLYDFPE----LGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAEAHFEK 312

Query: 199 A 199
           A
Sbjct: 313 A 313

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452

 Score = 57.8 bits (140), Expect = 1e-09
 Identities = 19/109 (17%), Positives = 31/109 (28%), Gaps = 7/109 (6%)

Query: 94  AGNLEACYTLGMIRFYCL---QNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGGKNE 150
           A    A   LG + +       +  +  +   KA  +    A Y L  I   G  G   +
Sbjct: 280 ADQPRAELLLGKLYYEGKWVPADAKAAEAHFEKAVGR-EVAADYYLGQIYRRGYLG---K 335

Query: 151 KDLRAGVALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEA 199
              +  +     AA  G   A   +      G G + +          A
Sbjct: 336 VYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLA 384

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452

 Score = 56.3 bits (136), Expect = 5e-09
 Identities = 19/124 (15%), Positives = 39/124 (31%), Gaps = 6/124 (4%)

Query: 74  AVKAKNWSDSAHRFLKRCVFAGNLEACYTLGMIRF--YCLQNRSSGTSLMAKAAMKSHAP 131
           A+K  +    A +  ++    G  EA   L  I+             +   +AA  +   
Sbjct: 13  ALKRGDTVT-AQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATY-RAAADTSPR 70

Query: 132 ALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASIGHVDAVRELGHCLQDGYGVRQNIEK 191
           A   L  +     G    E +     +L  +A + G  + +  L            N+  
Sbjct: 71  AQARLGRLLAAKPGA--TEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNA 128

Query: 192 GRRL 195
            +++
Sbjct: 129 QQQI 132

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 18/113 (15%), Positives = 32/113 (28%), Gaps = 8/113 (7%)

Query: 94  AGNLEACYTLGMIRFY---CLQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGGKNE 150
              + A Y LG I                 +  AA      A +++A +   G G    +
Sbjct: 315 GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGT---K 371

Query: 151 KDLRAGVALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE 203
            D          A +    +A         +         +G+RL+ +  A  
Sbjct: 372 PDPLNAYVFSQLAKAQDTPEANDLATQL--EAPLTPAQRAEGQRLVQQELAAR 422

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452

 Score = 50.9 bits (122), Expect = 3e-07
 Identities = 18/143 (12%), Positives = 28/143 (19%), Gaps = 35/143 (24%)

Query: 94  AGNLEACYTLGMIRFYCL----QNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSG---- 145
             +  A   LG +                SL+ KA        L  LA++          
Sbjct: 66  DTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPN 125

Query: 146 ---------------------------GGKNEKDLRAGVALCARAASIGHVDAVRELGHC 178
                                                 V    +AA         EL   
Sbjct: 126 VNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATV 185

Query: 179 LQDGYGVRQNIEKGRRLLIEANA 201
            Q      Q  E  +++    + 
Sbjct: 186 YQKKQQPEQQAELLKQMEAGVSR 208

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 19/128 (14%), Positives = 32/128 (25%), Gaps = 16/128 (12%)

Query: 76  KAKNWSDSAHRFLKRCVFAGNLEACYTLGMIRFY--CLQNRSSGTSLMAKAAMKSHAPAL 133
             +  S            AG  EA     ++                + KAA+ +     
Sbjct: 128 AQQQISQWQA--------AGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICY 179

Query: 134 YSLAVIQFNGSGGGKNEKDLRAGVALCARAASIGHVDAVRELG--HCLQDGYGVRQNIEK 191
             LA +           +     +       S G V A R       L D      + + 
Sbjct: 180 VELATVYQKKQQ----PEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKT 235

Query: 192 GRRLLIEA 199
            + LL + 
Sbjct: 236 AQALLEKI 243

>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens} Length = 64

 Score = 53.8 bits (129), Expect = 6e-10
 Identities = 15/48 (31%), Positives = 17/48 (35%), Gaps = 6/48 (12%)

Query: 276 SGCGRPETRVHEYRRCSVCGKVNYCSRACQAIDWKTRHKRECVPPLAP 323
             CGR  +       CS C    YC   CQ  DW+  H   C   L  
Sbjct: 21  WNCGRKASE-----TCSGCNTARYCGSFCQHKDWEK-HHHICGQTLQA 62

>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1 Length = 52

 Score = 52.5 bits (126), Expect = 1e-09
 Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 8/58 (13%)

Query: 262 GVSDLGNGLRLCSYSGCGRPETRVHEYRRCSVCGKVNYCSRACQAIDWKTRHKRECVP 319
           G  D     + C    CGR          C+ C KVNYCS  CQ  DWK  H+  C  
Sbjct: 1   GAMDAERKEQSCV--NCGREAMS-----ECTGCHKVNYCSTFCQRKDWK-DHQHICGQ 50

>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens} Length = 60

 Score = 52.6 bits (126), Expect = 1e-09
 Identities = 15/48 (31%), Positives = 18/48 (37%), Gaps = 6/48 (12%)

Query: 276 SGCGRPETRVHEYRRCSVCGKVNYCSRACQAIDWKTRHKRECVPPLAP 323
             CGR  +       CS C    YC   CQ  DW+ +H   C   L  
Sbjct: 17  WNCGRKASE-----TCSGCNTARYCGSFCQHKDWE-KHHHICGQTLQA 58

>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A Length = 70

 Score = 52.0 bits (124), Expect = 3e-09
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 8/61 (13%)

Query: 260 ESGVSDLGNGLRLCSYSGCGRPETRVHEYRRCSVCGKVNYCSRACQAIDWKTRHKRECVP 319
            SG+  +      C+Y  C    ++     RCS C    YC R CQ   W+ +H + CV 
Sbjct: 5   SSGLEAVAPERPRCAY--CSAEASK-----RCSRCQNEWYCCRECQVKHWE-KHGKTCVL 56

Query: 320 P 320
            
Sbjct: 57  A 57

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490

 Score = 44.6 bits (104), Expect = 4e-05
 Identities = 15/45 (33%), Positives = 17/45 (37%), Gaps = 1/45 (2%)

Query: 273 CSYSGCGRPETRVHEYRRCSVCGKVNYCSRACQAIDWKTRHKREC 317
                C     R  +  RC  C   +YC R CQ   W   HK EC
Sbjct: 47  LINFVCHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWLN-HKNEC 90

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 39.9 bits (93), Expect = 9e-04
 Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 4/43 (9%)

Query: 16 KPDLFDALPDDLLECVLSKLISSAPSPSDFINVLLTCKRLNRV 58
          +  +  + P+++LE V S +        D  +V L CK    +
Sbjct: 2  QKRIALSFPEEVLEHVFSFI----QLDKDRNSVSLVCKSWYEI 40

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	348
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.95
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.93
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.92
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.91
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.87
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.84
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.84
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.83
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.75
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.74
2d8q_A	70	BLU protein, zinc finger MYND domain containing pr	99.08
2dj8_A	60	Protein CBFA2T1; zinc finger MYND domain, protein	98.99
2od1_A	60	Protein CBFA2T1; zinc finger, cross-braced topolog	98.98
2odd_A	64	Protein CBFA2T1; MYND zinc finger, cross-braced to	98.96
2jw6_A	52	Deformed epidermal autoregulatory factor 1 homolo;	98.95
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.31
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	98.31
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.3
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	98.27
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.24
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.23
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.21
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.18
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.14
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.1
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.08
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.08
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.08
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.07
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.07
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.06
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.06
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.06
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.06
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.02
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.02
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.99
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	97.99
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	97.96
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	97.96
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	97.96
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	97.96
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	97.95
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	97.94
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.94
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	97.94
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	97.92
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	97.92
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.92
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	97.87
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	97.86
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.85
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	97.85
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	97.84
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.84
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.84
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	97.81
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.8
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	97.79
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	97.79
3u4t_A	272	TPR repeat-containing protein; structural genomics	97.78
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	97.78
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	97.78
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	97.77
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	97.77
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	97.76
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	97.75
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.74
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	97.72
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	97.71
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	97.71
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	97.71
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	97.71
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.7
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	97.7
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	97.7
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.68
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	97.68
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	97.67
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	97.67
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	97.67
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	97.66
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	97.66
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	97.66
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	97.65
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	97.65
3u4t_A	272	TPR repeat-containing protein; structural genomics	97.63
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	97.63
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	97.63
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	97.62
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.6
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	97.6
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	97.6
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	97.59
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	97.58
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	97.55
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	97.53
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.53
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	97.52
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	97.52
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	97.51
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	97.51
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	97.5
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	97.5
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	97.49
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.48
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	97.47
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	97.44
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	97.44
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	97.43
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	97.43
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.42
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	97.42
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.42
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	97.41
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	97.4
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	97.39
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.39
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.39
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	97.39
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	97.38
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.38
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	97.37
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	97.35
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	97.34
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.34
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.33
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	97.32
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.32
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	97.3
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	97.3
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.29
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.29
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	97.28
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	97.27
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	97.26
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	97.24
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	97.24
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	97.24
2gw1_A	514	Mitochondrial precursor proteins import receptor;	97.24
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.23
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.21
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.2
2gw1_A	514	Mitochondrial precursor proteins import receptor;	97.18
4g1t_A	472	Interferon-induced protein with tetratricopeptide	97.18
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	97.17
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	97.16
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.15
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.15
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	97.15
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.14
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	97.13
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.13
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	97.12
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	97.12
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	97.09
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.07
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	97.05
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.05
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.0
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	96.98
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	96.96
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	96.96
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.95
2kat_A	115	Uncharacterized protein; NESG, structure, structur	96.94
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	96.93
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	96.92
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	96.91
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	96.89
4g1t_A	472	Interferon-induced protein with tetratricopeptide	96.89
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	96.88
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	96.87
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	96.85
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	96.83
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	96.81
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	96.81
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	96.75
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	96.74
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	96.72
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	96.69
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	96.64
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	96.53
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	96.45
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	96.34
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.06
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	96.02
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	95.98
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	95.93
1pc2_A	152	Mitochondria fission protein; unknown function; NM	95.66
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	95.53
2l6j_A	111	TPR repeat-containing protein associated with HSP;	95.52
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	95.49
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.0
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	94.98
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	94.92
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	94.89
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	94.84
2yqq_A	56	Zinc finger HIT domain-containing protein 3; struc	94.68
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	94.64
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	94.28
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	93.06
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	92.48
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	92.4
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	92.18
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	91.98
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	91.49
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	90.93
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	90.77
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	89.79
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	88.59
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	87.69
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	87.63
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	87.44
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	86.93
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	86.44
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	86.25
1x4s_A	59	Protein FON, zinc finger HIT domain containing pro	85.52
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	84.91
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	82.31

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.95  E-value=1.3e-26  Score=193.17  Aligned_cols=124  Identities=18%  Similarity=0.156  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHccCCCCCCccCHHHHHHHH
Q 018965           81 SDSAHRFLKRCVFAGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGGKNEKDLRAGVALC  160 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~  160 (348)
                      .++|+.||+++++.|+++|+  ||.+|. ...+.++|++||++|+++|++.|+++||.+|..|.|   +++|+++|++||
T Consensus        11 ~~~A~~~~~~aa~~g~~~a~--lg~~y~-~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g---~~~d~~~A~~~~   84 (138)
T 1klx_A           11 LKKAIQYYVKACELNEMFGC--LSLVSN-SQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKY---VKKDLRKAAQYY   84 (138)
T ss_dssp             HHHHHHHHHHHHHTTCTTHH--HHHHTC-TTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSS---SCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHhhh--HHHHHH-cCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCC---CCccHHHHHHHH
Confidence            78999999999999999999  999998 345667799999999999999999999999999999   999999999999


Q ss_pred             HHHHhCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHh
Q 018965          161 ARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFFQSVSK  210 (348)
Q Consensus       161 ~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~~A~~~  210 (348)
                      ++|++.|++.|+++||.+|.+|.||++|.++|++||++|+++|++.|+.+
T Consensus        85 ~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~  134 (138)
T 1klx_A           85 SKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACGI  134 (138)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999975

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.93  E-value=6.1e-25  Score=217.26  Aligned_cols=156  Identities=13%  Similarity=0.095  Sum_probs=130.3

Q ss_pred             cHHHHHHHHHHHHHCCCHHHHHHhhhhhh---hccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           80 WSDSAHRFLKRCVFAGNLEACYTLGMIRF---YCLQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~G~~~A~~~Lg~~y~---~~~~d~~~A~~~~~~AA~~G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      ..++|+.||++|++.|+++|+++||.+|.   |+++|.++|+.||++|+ .|++.|+++||.+|..|.|   +++|+.+|
T Consensus       266 d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g---~~~d~~~A  341 (452)
T 3e4b_A          266 DVEQMMKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYL---GKVYPQKA  341 (452)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTT---SSCCHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCC---CCcCHHHH
Confidence            47888888888888888888888888887   57788888888888888 8888888888888888888   88888888


Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHhhhhhhhhhhhhhhcccccCCCCCCCc
Q 018965          157 VALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFFQSVSKTRTRHQSYYFQLARATDAQIPCSPLL  236 (348)
Q Consensus       157 ~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ll  236 (348)
                      ++||++|++.|++.|+++||.+|..|.||++|+.+|..||++|+++|++.|+..                         +
T Consensus       342 ~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~-------------------------l  396 (452)
T 3e4b_A          342 LDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDL-------------------------A  396 (452)
T ss_dssp             HHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHH-------------------------H
T ss_pred             HHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHH-------------------------H
Confidence            888888888888888888888888888888888888888888888888888763                         4


Q ss_pred             ccccccCCCCCcchhhhHHHHHHhhccC
Q 018965          237 SDFGYNVEAPEVHPVNNFLKEWFESGVS  264 (348)
Q Consensus       237 ~~~g~~~p~~e~~~A~rf~~ew~~~~~~  264 (348)
                      ..+...+++.+...+..++.+|....+.
T Consensus       397 ~~l~~~~~~~~~~~a~~~~~~~~~~~~~  424 (452)
T 3e4b_A          397 TQLEAPLTPAQRAEGQRLVQQELAARGT  424 (452)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHhccc
Confidence            4455667788888899999999887543

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.92  E-value=2.6e-24  Score=191.07  Aligned_cols=126  Identities=17%  Similarity=0.114  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHhhhhhh--hccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHccCCCCCCccCHHHHHH
Q 018965           81 SDSAHRFLKRCVFAGNLEACYTLGMIRF--YCLQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGGKNEKDLRAGVA  158 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G~~~A~~~Lg~~y~--~~~~d~~~A~~~~~~AA~~G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~  158 (348)
                      .++|+.||++|++.|+++|+++||.+|.  ++++|.++|++||++|++.|++.|+++||.+|..|.|   +++|+.+|++
T Consensus        34 ~~~A~~~~~~a~~~g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g---~~~d~~~A~~  110 (212)
T 3rjv_A           34 YQKAEYWAQKAAAQGDGDALALLAQLKIRNPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQA---GATDVAHAIT  110 (212)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCGGG---SSCCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCC---CccCHHHHHH
Confidence            4455555555555555555555555554  3444555555555555555555555555555555555   5555555555


Q ss_pred             HHHHHHhCCC----HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc-CCHHHHH
Q 018965          159 LCARAASIGH----VDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR-EFFQSVS  209 (348)
Q Consensus       159 ~~~kAA~~G~----~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~-G~~~A~~  209 (348)
                      ||++|++.|+    +.|+++||.+|..|.||++|.++|+.||++|++. |++.|+.
T Consensus       111 ~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~  166 (212)
T 3rjv_A          111 LLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEY  166 (212)
T ss_dssp             HHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHH
T ss_pred             HHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHH
Confidence            5555555555    5555555555555555555555555555555555 5555544

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.91  E-value=8.7e-24  Score=187.70  Aligned_cols=128  Identities=18%  Similarity=0.111  Sum_probs=123.9

Q ss_pred             cHHHHHHHHHHHHHCCCHHHHHHhhhhhh---hccCCHHHHHHHHHHHHhCCC----HHHHHHHHHHHHccCCCCCCccC
Q 018965           80 WSDSAHRFLKRCVFAGNLEACYTLGMIRF---YCLQNRSSGTSLMAKAAMKSH----APALYSLAVIQFNGSGGGKNEKD  152 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~G~~~A~~~Lg~~y~---~~~~d~~~A~~~~~~AA~~G~----~~A~~~Lg~~y~~G~g~~~~~~d  152 (348)
                      ..++|+.||++|++.|++.|+++||.+|.   ++.+|.++|++||++|++.|+    +.|+++||.+|..|.|   +++|
T Consensus        68 ~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g---~~~d  144 (212)
T 3rjv_A           68 DYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVH---GPED  144 (212)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSS---SSCC
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCC---CCCC
Confidence            48999999999999999999999999998   679999999999999999999    9999999999999999   9999


Q ss_pred             HHHHHHHHHHHHhC-CCHHHHHHHHHHHhccCC--CCCCHHHHHHHHHHHHhcCCHHHHHh
Q 018965          153 LRAGVALCARAASI-GHVDAVRELGHCLQDGYG--VRQNIEKGRRLLIEANAREFFQSVSK  210 (348)
Q Consensus       153 ~~~A~~~~~kAA~~-G~~~A~~~Lg~~y~~G~G--v~~d~~~A~~w~~~Aa~~G~~~A~~~  210 (348)
                      +.+|++||++|++. |++.|+++||.+|..|.|  |++|.++|+.||++|+++|+..|+..
T Consensus       145 ~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A~~~  205 (212)
T 3rjv_A          145 DVKASEYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEE  205 (212)
T ss_dssp             HHHHHHHHHHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            99999999999999 999999999999999988  99999999999999999999999874

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.87  E-value=1.9e-21  Score=192.13  Aligned_cols=126  Identities=17%  Similarity=0.120  Sum_probs=121.7

Q ss_pred             cHHHHHHHHHHHHHCCCHHHHHHhhhhhh--hccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHccCCCCCCccCHHHHH
Q 018965           80 WSDSAHRFLKRCVFAGNLEACYTLGMIRF--YCLQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGGKNEKDLRAGV  157 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~G~~~A~~~Lg~~y~--~~~~d~~~A~~~~~~AA~~G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~  157 (348)
                      ..++|+.||++++ .|++.|+++||.+|+  ...+|.++|+.||++|++.|++.|+++||.+|..|.|   +++|+.+|+
T Consensus       232 d~~~A~~~~~~aa-~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g---~~~d~~~A~  307 (452)
T 3e4b_A          232 DEKTAQALLEKIA-PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKW---VPADAKAAE  307 (452)
T ss_dssp             CHHHHHHHHHHHG-GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSS---SCCCHHHHH
T ss_pred             CHHHHHHHHHHHc-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCC---CCCCHHHHH
Confidence            4899999999999 999999999999955  4689999999999999999999999999999999999   999999999


Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHh
Q 018965          158 ALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFFQSVSK  210 (348)
Q Consensus       158 ~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~~A~~~  210 (348)
                      +||++|+ .|++.|+++||.+|..|.|+++|.++|+.||++|+++|++.|+.+
T Consensus       308 ~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~  359 (452)
T 3e4b_A          308 AHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFA  359 (452)
T ss_dssp             HHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHH
T ss_pred             HHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHH
Confidence            9999999 999999999999999999999999999999999999999999986

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.84  E-value=5.6e-20  Score=182.28  Aligned_cols=127  Identities=18%  Similarity=0.187  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHhhhhhh---hccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHccCCCCCCccCHHHHH
Q 018965           81 SDSAHRFLKRCVFAGNLEACYTLGMIRF---YCLQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGGKNEKDLRAGV  157 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G~~~A~~~Lg~~y~---~~~~d~~~A~~~~~~AA~~G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~  157 (348)
                      .++|+.||+++++.|++.|++.||.+|.   |+++|.++|+.||++|+++|++.|++.||.+|..|.|   +++|.++|+
T Consensus        95 ~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g---~~~d~~~A~  171 (490)
T 2xm6_A           95 YAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDG---VTRDYVMAR  171 (490)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSS---SCCCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCC---CCCCHHHHH
Confidence            5666666666666666666666666665   3466666666666666666666666666666666666   666666666


Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHh
Q 018965          158 ALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFFQSVSK  210 (348)
Q Consensus       158 ~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~~A~~~  210 (348)
                      +||++|++.|++.+++.||.+|..|.|+++|.++|+.||++|++.|++.++..
T Consensus       172 ~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~  224 (490)
T 2xm6_A          172 EWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLH  224 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHH
Confidence            66666666666666666666666666666666666666666666666666654

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.84  E-value=3.1e-20  Score=154.26  Aligned_cols=95  Identities=19%  Similarity=0.249  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHhhhhhh---hccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHccCCCCCCccCHHHHH
Q 018965           81 SDSAHRFLKRCVFAGNLEACYTLGMIRF---YCLQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGGKNEKDLRAGV  157 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G~~~A~~~Lg~~y~---~~~~d~~~A~~~~~~AA~~G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~  157 (348)
                      .++|++||++|++.|++.|+++||.+|.   ++++|.++|++||++|+++|++.|+++||.+|..|.|   +++|+++|+
T Consensus        41 ~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g---~~~d~~~A~  117 (138)
T 1klx_A           41 KQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKG---VVKNEKQAV  117 (138)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSS---SCCCHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCC---CCcCHHHHH
Confidence            5679999999999999999999999998   6799999999999999999999999999999999999   999999999


Q ss_pred             HHHHHHHhCCCHHHHHHHHHH
Q 018965          158 ALCARAASIGHVDAVRELGHC  178 (348)
Q Consensus       158 ~~~~kAA~~G~~~A~~~Lg~~  178 (348)
                      +||++|++.|++.|+++|+.+
T Consensus       118 ~~~~~Aa~~g~~~A~~~l~~l  138 (138)
T 1klx_A          118 KTFEKACRLGSEDACGILNNY  138 (138)
T ss_dssp             HHHHHHHHTTCHHHHHHC---
T ss_pred             HHHHHHHHCCCHHHHHHHhhC
Confidence            999999999999999999864

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.83  E-value=9.1e-20  Score=180.77  Aligned_cols=127  Identities=23%  Similarity=0.259  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHhhhhhh---hccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHccCCCCCCccCHHHHH
Q 018965           81 SDSAHRFLKRCVFAGNLEACYTLGMIRF---YCLQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGGKNEKDLRAGV  157 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G~~~A~~~Lg~~y~---~~~~d~~~A~~~~~~AA~~G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~  157 (348)
                      .++|+.||+++++.|+++|++.||.+|.   |+++|.++|++||++|++.|++.|++.||.+|..|.|   +++|+++|+
T Consensus        59 ~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g---~~~~~~~A~  135 (490)
T 2xm6_A           59 LTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNG---VKVDKAESV  135 (490)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSS---SCCCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCC---CCCCHHHHH
Confidence            4556666666666666666666666655   3455666666666666666666666666666666655   556666666


Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHh
Q 018965          158 ALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFFQSVSK  210 (348)
Q Consensus       158 ~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~~A~~~  210 (348)
                      +||++|++.|++.+++.||.+|..|.|+++|.++|+.||++|++.|++.|+..
T Consensus       136 ~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~  188 (490)
T 2xm6_A          136 KWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQ  188 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            66666666666666666666666666666666666666666666666655554

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.75  E-value=7.7e-17  Score=146.46  Aligned_cols=126  Identities=14%  Similarity=0.187  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHhhhhhh---hccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHccCCCCCCccCHHHHH
Q 018965           81 SDSAHRFLKRCVFAGNLEACYTLGMIRF---YCLQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGGKNEKDLRAGV  157 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G~~~A~~~Lg~~y~---~~~~d~~~A~~~~~~AA~~G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~  157 (348)
                      .++|+.+|+++++.+++.+++.||.+|.   ++.+|.++|+.||++|++.|++.+++.||.+|..|.|   +..|+++|+
T Consensus       130 ~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~---~~~~~~~A~  206 (273)
T 1ouv_A          130 FKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEG---ATKNFKEAL  206 (273)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS---SCCCHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCC---CCccHHHHH
Confidence            4555555555555555555555555554   2345555555555555555555555555555555555   555555555


Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 018965          158 ALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFFQSVS  209 (348)
Q Consensus       158 ~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~~A~~  209 (348)
                      .||++|++.|++.++++||.+|..|.|+.+|.++|+.||++|++.|+..|+.
T Consensus       207 ~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~  258 (273)
T 1ouv_A          207 ARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACD  258 (273)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHH
Confidence            5555555555555555555555555555555555555555555555555554

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.74  E-value=3.3e-16  Score=142.26  Aligned_cols=128  Identities=17%  Similarity=0.184  Sum_probs=99.7

Q ss_pred             cHHHHHHHHHHHHHCCCHHHHHHhhhhhh---hccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           80 WSDSAHRFLKRCVFAGNLEACYTLGMIRF---YCLQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~G~~~A~~~Lg~~y~---~~~~d~~~A~~~~~~AA~~G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      ..++|+.+|+++++.+++.+++.||.+|.   ++.+|.++|+.||++|++.|++.++++||.+|..|.|   +..|+++|
T Consensus        93 ~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~---~~~~~~~A  169 (273)
T 1ouv_A           93 NTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRG---TPKDLKKA  169 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSS---SCCCHHHH
T ss_pred             CHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCC---CCCCHHHH
Confidence            36777888888888888888888887776   3477778888888888888888888888888877776   67778888


Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHh
Q 018965          157 VALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFFQSVSK  210 (348)
Q Consensus       157 ~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~~A~~~  210 (348)
                      +.||++|++.|++.+++.||.+|..|.|+..|.++|+.||++|++.+++.+...
T Consensus       170 ~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~  223 (273)
T 1ouv_A          170 LASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFN  223 (273)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHH
Confidence            888888888888888888888888877777888888888888888777776654

>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A

Probab=99.08  E-value=1.5e-10  Score=84.50  Aligned_cols=47  Identities=34%  Similarity=0.839  Sum_probs=40.0

Q ss_pred             CccccccCCCCCCCCccccccccCCCCCceeecChHHHHHhchhhchhcCCCCCC
Q 018965          268 NGLRLCSYSGCGRPETRVHEYRRCSVCGKVNYCSRACQAIDWKTRHKRECVPPLA  322 (348)
Q Consensus       268 ~~~~~C~~~~C~~~~~~~~~l~~C~~C~~~~YCs~~CQ~~~W~~~Hk~~C~~~~~  322 (348)
                      ...+.|.+  |++.     .+++|++|+.++|||++||+.||+. ||.+|..+..
T Consensus        13 ~~~~~C~~--C~~~-----~~~~Cs~Ck~v~YCs~eCQ~~~W~~-HK~~C~~~~~   59 (70)
T 2d8q_A           13 PERPRCAY--CSAE-----ASKRCSRCQNEWYCCRECQVKHWEK-HGKTCVLAAQ   59 (70)
T ss_dssp             CCCCBCSS--SCCB-----CCCBCTTTSCCBCSCHHHHHHTHHH-HHHHCCCCCC
T ss_pred             CCCCcCCC--CCCc-----ccccCCCCCCEeeCCHHHhHHHHHH-HHHHHHHHHH
Confidence            34568875  7764     4699999999999999999999998 9999998764

>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1

Probab=98.99  E-value=3.8e-10  Score=79.92  Aligned_cols=45  Identities=36%  Similarity=0.846  Sum_probs=38.3

Q ss_pred             ccccccCCCCCCCCccccccccCCCCCceeecChHHHHHhchhhchhcCCCCC
Q 018965          269 GLRLCSYSGCGRPETRVHEYRRCSVCGKVNYCSRACQAIDWKTRHKRECVPPL  321 (348)
Q Consensus       269 ~~~~C~~~~C~~~~~~~~~l~~C~~C~~~~YCs~~CQ~~~W~~~Hk~~C~~~~  321 (348)
                      ....|.+  |++.     .+++|++|+.++|||++||+.||+. ||.+|..+.
T Consensus        14 ~~~~C~~--C~~~-----~~~~Cs~C~~v~YCs~~CQ~~~W~~-Hk~~C~~~~   58 (60)
T 2dj8_A           14 SSESCWN--CGRK-----ASETCSGCNTARYCGSFCQHKDWEK-HHHICSGPS   58 (60)
T ss_dssp             CSCCCSS--SCSC-----CCEECTTTSCCEESSHHHHHHTHHH-HTTTSCCSS
T ss_pred             CCccccc--CCCC-----CcccCCCCCCEeeeCHHHHHHHHHH-HHHHHHhcc
Confidence            3457885  7763     4699999999999999999999996 999998765

>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens}

Probab=98.98  E-value=3.6e-10  Score=80.01  Aligned_cols=46  Identities=35%  Similarity=0.827  Sum_probs=38.5

Q ss_pred             CccccccCCCCCCCCccccccccCCCCCceeecChHHHHHhchhhchhcCCCCC
Q 018965          268 NGLRLCSYSGCGRPETRVHEYRRCSVCGKVNYCSRACQAIDWKTRHKRECVPPL  321 (348)
Q Consensus       268 ~~~~~C~~~~C~~~~~~~~~l~~C~~C~~~~YCs~~CQ~~~W~~~Hk~~C~~~~  321 (348)
                      .....|.+  |++.     .+++|++|+.++|||++||+.||+. ||.+|..+.
T Consensus        11 ~~~~~C~~--C~~~-----~~~~Cs~C~~v~YCs~~CQ~~dW~~-Hk~~C~~~~   56 (60)
T 2od1_A           11 DSSESCWN--CGRK-----ASETCSGCNTARYCGSFCQHKDWEK-HHHICGQTL   56 (60)
T ss_dssp             CCSSCCTT--TSSC-----CCEECTTTSCCEESSHHHHHHHHHH-HTTTSSCSS
T ss_pred             CCCCcccc--CCCc-----ccccCCCCCCeeecCHHHHHHHHHH-HhHHHcccc
Confidence            34467885  7763     4699999999999999999999996 999998654

>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}

Probab=98.96  E-value=4e-10  Score=80.90  Aligned_cols=45  Identities=36%  Similarity=0.829  Sum_probs=38.1

Q ss_pred             ccccccCCCCCCCCccccccccCCCCCceeecChHHHHHhchhhchhcCCCCC
Q 018965          269 GLRLCSYSGCGRPETRVHEYRRCSVCGKVNYCSRACQAIDWKTRHKRECVPPL  321 (348)
Q Consensus       269 ~~~~C~~~~C~~~~~~~~~l~~C~~C~~~~YCs~~CQ~~~W~~~Hk~~C~~~~  321 (348)
                      ....|.+  |++.     .+++|++|+.++|||++||+.||+. ||.+|..+.
T Consensus        16 ~~~~C~~--C~~~-----~~~~Cs~C~~~~YCs~~CQ~~~W~~-Hk~~C~~~~   60 (64)
T 2odd_A           16 SSESCWN--CGRK-----ASETCSGCNTARYCGSFCQHKDWEK-HHHICGQTL   60 (64)
T ss_dssp             CSSSCTT--TSSC-----CCEEETTTSCCEESSHHHHHHHHHH-HTTTTTSSC
T ss_pred             CCCcCcc--ccCC-----CcccCCCCCChhhCCHHHHHHHHHH-HhHHHhccc
Confidence            4567885  7763     4699999999999999999999996 999998654

>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1

Probab=98.95  E-value=5.3e-10  Score=76.79  Aligned_cols=43  Identities=44%  Similarity=0.954  Sum_probs=35.3

Q ss_pred             ccccccCCCCCCCCccccccccCCCCCceeecChHHHHHhchhhchhcCCC
Q 018965          269 GLRLCSYSGCGRPETRVHEYRRCSVCGKVNYCSRACQAIDWKTRHKRECVP  319 (348)
Q Consensus       269 ~~~~C~~~~C~~~~~~~~~l~~C~~C~~~~YCs~~CQ~~~W~~~Hk~~C~~  319 (348)
                      ....|.+  |++.     .+++|++|+.+.|||++||+.||+. ||.+|.+
T Consensus         8 ~~~~C~~--C~~~-----~~~~C~~C~~~~YCs~~CQ~~~W~~-Hk~~C~~   50 (52)
T 2jw6_A            8 KEQSCVN--CGRE-----AMSECTGCHKVNYCSTFCQRKDWKD-HQHICGQ   50 (52)
T ss_dssp             ---CCSS--SSSS-----CSEECTTTCSSEESSHHHHHHHTTT-GGGTTTC
T ss_pred             cCCcCCC--CCCC-----CcCcCCCCCCEeecCHHHHHHHHHH-HCHHHcc
Confidence            3457875  7764     4699999999999999999999996 9999975

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.31  E-value=5.3e-06  Score=86.42  Aligned_cols=118  Identities=16%  Similarity=0.092  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .++|+.+|++|.+.  .+++++++||.+|. ..++.++|+..|++|.+.  +++.+.++||.+|.. .|      ++++|
T Consensus        25 ~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~-~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~-~g------~~~~A   96 (723)
T 4gyw_A           25 IEEAVRLYRKALEVFPEFAAAHSNLASVLQ-QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE-MQ------DVQGA   96 (723)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC------CHHHH
Confidence            56777777776664  46777777777776 456677777777777654  466777777777753 22      56777


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC--CHHHHHh
Q 018965          157 VALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE--FFQSVSK  210 (348)
Q Consensus       157 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G--~~~A~~~  210 (348)
                      ++.|++|.+.  .++.+.++||.+|..    ..++++|+.+|++|.+..  ++.+..+
T Consensus        97 ~~~~~kAl~l~P~~~~a~~~Lg~~~~~----~g~~~eAi~~~~~Al~l~P~~~~a~~~  150 (723)
T 4gyw_A           97 LQCYTRAIQINPAFADAHSNLASIHKD----SGNIPEAIASYRTALKLKPDFPDAYCN  150 (723)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSCCHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHhh
Confidence            7777777653  567777777776664    346777777777776543  3444443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=98.31  E-value=2.4e-05  Score=68.37  Aligned_cols=118  Identities=13%  Similarity=0.019  Sum_probs=98.3

Q ss_pred             cHHHHHHHHHHHHHC--CCHHHHHHhhhhhhhcc-----------CCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccC
Q 018965           80 WSDSAHRFLKRCVFA--GNLEACYTLGMIRFYCL-----------QNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGS  144 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~-----------~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~  144 (348)
                      ..++|+..|+++.+.  .++.+.+.||.+|. ..           ++.++|+..|++|.+.  +++.+.+.||.+|.. .
T Consensus        54 ~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~-~  131 (217)
T 2pl2_A           54 LVNPALENGKTLVARTPRYLGGYMVLSEAYV-ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYAL-L  131 (217)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-T
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-c
Confidence            378999999998875  58999999999998 44           7899999999999875  589999999999964 3


Q ss_pred             CCCCCccCHHHHHHHHHHHHhC-CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC--CHHHHH
Q 018965          145 GGGKNEKDLRAGVALCARAASI-GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE--FFQSVS  209 (348)
Q Consensus       145 g~~~~~~d~~~A~~~~~kAA~~-G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G--~~~A~~  209 (348)
                      |      ++++|+.+|++|.+. .++.+.++||.+|..    ..+.++|+.+|++|.+..  ++.+..
T Consensus       132 g------~~~~A~~~~~~al~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~P~~~~~~~  189 (217)
T 2pl2_A          132 G------ERDKAEASLKQALALEDTPEIRSALAELYLS----MGRLDEALAQYAKALEQAPKDLDLRV  189 (217)
T ss_dssp             T------CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             C------ChHHHHHHHHHHHhcccchHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChHHHH
Confidence            3      789999999998754 689999999999876    358999999999998753  444444

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.30  E-value=2.3e-06  Score=70.68  Aligned_cols=116  Identities=7%  Similarity=-0.019  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHHHCC--CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFAG--NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G--~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .++|+..|+++....  ++.+.|.||.+|+ ..+++++|+++|++|.+.  .++.+.+.||.+|.. .|      ++++|
T Consensus        13 ~e~ai~~~~~a~~~~p~~~~~~~~la~~y~-~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~~------~~~~A   84 (150)
T 4ga2_A           13 VERYIASVQGSTPSPRQKSIKGFYFAKLYY-EAKEYDLAKKYICTYINVQERDPKAHRFLGLLYEL-EE------NTDKA   84 (150)
T ss_dssp             HHHHHHHHHHHSCSHHHHHTTHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHH
T ss_pred             HHHHHHHHHHhcccCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC------chHHH
Confidence            688999999987653  4567899999998 678999999999999876  589999999999974 23      78999


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCH-HHHHHHHHHHHhc--CCHHHH
Q 018965          157 VALCARAASI--GHVDAVRELGHCLQDGYGVRQNI-EKGRRLLIEANAR--EFFQSV  208 (348)
Q Consensus       157 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~-~~A~~w~~~Aa~~--G~~~A~  208 (348)
                      +..|++|.+.  .++++.++||.+|..-    .+. +.+..|+++|.+.  +++.+.
T Consensus        85 ~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~aa~~~~~~al~l~P~~~~~~  137 (150)
T 4ga2_A           85 VECYRRSVELNPTQKDLVLKIAELLCKN----DVTDGRAKYWVERAAKLFPGSPAVY  137 (150)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHH----CSSSSHHHHHHHHHHHHSTTCHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHhCcCCHHHH
Confidence            9999999875  6899999999988752    233 3455677888764  444443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=98.27  E-value=1.2e-05  Score=70.30  Aligned_cols=124  Identities=15%  Similarity=0.016  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccC-CCCCC---ccC
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGS-GGGKN---EKD  152 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~-g~~~~---~~d  152 (348)
                      .++|+..|+++.+.  +++++.+.+|.++. ..++.++|+.+|+++.+.  .++.+.+.||.+|..-. ....+   ..+
T Consensus        21 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~   99 (217)
T 2pl2_A           21 YDAALTLFERALKENPQDPEALYWLARTQL-KLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGY   99 (217)
T ss_dssp             HHHHHHHHHHHHTTSSSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccC
Confidence            78999999999876  69999999999998 678899999999999865  47899999999996420 00000   047


Q ss_pred             HHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC-CHHHHH
Q 018965          153 LRAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE-FFQSVS  209 (348)
Q Consensus       153 ~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G-~~~A~~  209 (348)
                      +++|+..|++|.+.  .++.+.+.||.+|..    ..+.++|+.+|++|.+.. ++.+..
T Consensus       100 ~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~  155 (217)
T 2pl2_A          100 LEQALSVLKDAERVNPRYAPLHLQRGLVYAL----LGERDKAEASLKQALALEDTPEIRS  155 (217)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcccchHHHH
Confidence            89999999999874  689999999999876    568999999999998764 444444

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.24  E-value=6.6e-06  Score=68.64  Aligned_cols=99  Identities=11%  Similarity=0.066  Sum_probs=83.3

Q ss_pred             CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHHH
Q 018965           96 NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVDA  171 (348)
Q Consensus        96 ~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A  171 (348)
                      ++++.|.+|..++ ..+++++|+.+|+++.+.  .++.+.++||.+|.. .|      ++++|+..|++|.+.  .++.+
T Consensus        35 ~~~~~~~lg~~~~-~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~-~g------~~~~Ai~~~~~al~l~P~~~~~  106 (151)
T 3gyz_A           35 MMDDIYSYAYDFY-NKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQI-KE------QFQQAADLYAVAFALGKNDYTP  106 (151)
T ss_dssp             HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHSSSCCHH
T ss_pred             HHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-Hc------cHHHHHHHHHHHHhhCCCCcHH
Confidence            5668899998887 678999999999999876  589999999999964 33      789999999999864  68999


Q ss_pred             HHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHH
Q 018965          172 VRELGHCLQDGYGVRQNIEKGRRLLIEANAREFFQ  206 (348)
Q Consensus       172 ~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~~  206 (348)
                      .++||.+|..    ..++++|+..|++|.+.....
T Consensus       107 ~~~lg~~~~~----lg~~~eA~~~~~~al~l~~~~  137 (151)
T 3gyz_A          107 VFHTGQCQLR----LKAPLKAKECFELVIQHSNDE  137 (151)
T ss_dssp             HHHHHHHHHH----TTCHHHHHHHHHHHHHHCCCH
T ss_pred             HHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCH
Confidence            9999999876    458999999999998765433

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.23  E-value=0.00011  Score=61.32  Aligned_cols=117  Identities=19%  Similarity=0.268  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .++|+..++++...  .++.+.+.+|.++. ...+.+.+..++.++.+.  .++.+.+.+|.+|.. .      .++++|
T Consensus        55 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~-~------g~~~~A  126 (184)
T 3vtx_A           55 PNDAIESLKKFVVLDTTSAEAYYILGSANF-MIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDS-M------GEHDKA  126 (184)
T ss_dssp             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-T------TCHHHH
T ss_pred             HHHHHHHHHHHHhcCchhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-h------CCchhH
Confidence            77889999888664  57888999998887 677899999999998865  478899999999964 2      378999


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 018965          157 VALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFFQSVS  209 (348)
Q Consensus       157 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~~A~~  209 (348)
                      +..|+++.+.  .++.+.++||.+|..    ..+.++|+.+|++|.+.....+..
T Consensus       127 ~~~~~~~l~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~a~~  177 (184)
T 3vtx_A          127 IEAYEKTISIKPGFIRAYQSIGLAYEG----KGLRDEAVKYFKKALEKEEKKAKY  177 (184)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHhcchhhhHHHHHHHHHHH----CCCHHHHHHHHHHHHhCCccCHHH
Confidence            9999999874  689999999999986    568999999999999876555543

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.21  E-value=1.5e-05  Score=63.75  Aligned_cols=101  Identities=11%  Similarity=0.056  Sum_probs=74.0

Q ss_pred             HHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHHHH
Q 018965           97 LEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVDAV  172 (348)
Q Consensus        97 ~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~  172 (348)
                      +++..++|..|+ ..+++++|+.+|++|.+.  .++.+.+++|.+|.. .|      ++.+|+..|++|.+.  .++.+.
T Consensus        13 a~~~~~~G~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~------~~~~A~~~~~~al~~~p~~~~a~   84 (126)
T 4gco_A           13 AQEEKNKGNEYF-KKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTK-LM------EFQRALDDCDTCIRLDSKFIKGY   84 (126)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHh-hc------cHHHHHHHHHHHHHhhhhhhHHH
Confidence            345667787777 677888888888888765  467888888888863 23      678888888888763  578888


Q ss_pred             HHHHHHHhccCCCCCCHHHHHHHHHHHHhc--CCHHHHH
Q 018965          173 RELGHCLQDGYGVRQNIEKGRRLLIEANAR--EFFQSVS  209 (348)
Q Consensus       173 ~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~--G~~~A~~  209 (348)
                      +++|.+|..    ..++++|+.+|++|.+.  .+..|+.
T Consensus        85 ~~lg~~~~~----~~~~~~A~~~~~~al~l~P~~~~a~~  119 (126)
T 4gco_A           85 IRKAACLVA----MREWSKAQRAYEDALQVDPSNEEARE  119 (126)
T ss_dssp             HHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHH----CCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence            888888765    45788888888888765  3444444

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.18  E-value=1.7e-05  Score=67.87  Aligned_cols=111  Identities=10%  Similarity=0.131  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHHHH
Q 018965           81 SDSAHRFLKRCVFAGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAGVA  158 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~  158 (348)
                      .++|+..|+++.+ .++.+.+.+|.+|. ..++.++|+.+|++|.+.  .++.+.+++|.+|.. .|      ++++|+.
T Consensus        22 ~~~A~~~~~~a~~-~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~-~~------~~~~A~~   92 (213)
T 1hh8_A           22 WKGALDAFSAVQD-PHSRICFNIGCMYT-ILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ-TE------KYDLAIK   92 (213)
T ss_dssp             HHHHHHHHHTSSS-CCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHHHH
T ss_pred             HHHHHHHHHHHcC-CChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-cc------cHHHHHH
Confidence            7899999999864 48999999999998 678999999999999875  588999999999974 33      7899999


Q ss_pred             HHHHHHhCC------------------CHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCC
Q 018965          159 LCARAASIG------------------HVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREF  204 (348)
Q Consensus       159 ~~~kAA~~G------------------~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~  204 (348)
                      +|+++.+..                  .+.+.+++|.+|..    ..+.++|+.+|++|.+...
T Consensus        93 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~p  152 (213)
T 1hh8_A           93 DLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK----KEEWKKAEEQLALATSMKS  152 (213)
T ss_dssp             HHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH----ccCHHHHHHHHHHHHHcCc
Confidence            999999853                  23899999999876    4599999999999987654

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.14  E-value=7.9e-07  Score=87.18  Aligned_cols=49  Identities=29%  Similarity=0.653  Sum_probs=40.5

Q ss_pred             ccccccCCCCCCCCccccccccCCCCCceeecChHHHHHhchhhchhcCCCCCCC
Q 018965          269 GLRLCSYSGCGRPETRVHEYRRCSVCGKVNYCSRACQAIDWKTRHKRECVPPLAP  323 (348)
Q Consensus       269 ~~~~C~~~~C~~~~~~~~~l~~C~~C~~~~YCs~~CQ~~~W~~~Hk~~C~~~~~~  323 (348)
                      ....|.+  |.+..   ..+.+|++|+.+.|||++||+.||+. ||.+|..++.+
T Consensus        48 ~~~~C~~--C~~~~---~~~~~C~~C~~~~yCs~~Cq~~~w~~-Hk~eC~~l~~~   96 (433)
T 3qww_A           48 RGHHCEC--CFARK---EGLSKCGRCKQAFYCDVECQKEDWPL-HKLECSSMVVL   96 (433)
T ss_dssp             TTTBCTT--TCCBC---SSCEECTTTSCCEESSHHHHHHHHHH-HTTTHHHHHHS
T ss_pred             cCCcCCc--ccccC---CCCCCCCCCcceeecChhhhhhhhhH-HHHHHHHHHHh
Confidence            4567885  76643   36799999999999999999999986 99999877654

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.10  E-value=1.4e-05  Score=66.80  Aligned_cols=112  Identities=15%  Similarity=0.095  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHH-HHccCCCCCCccCH--
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVI-QFNGSGGGKNEKDL--  153 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~-y~~G~g~~~~~~d~--  153 (348)
                      .++|+.+|+++.+.  .++.+.+.+|.+|. ..++.++|+.+|+++.+.  .++.+.+.+|.+ |.. .|      ++  
T Consensus        26 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~-~~------~~~~   97 (177)
T 2e2e_A           26 PEAQLQALQDKIRANPQNSEQWALLGEYYL-WQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQ-AS------QHMT   97 (177)
T ss_dssp             -CCCCHHHHHHHHHCCSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH-TT------TCCC
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-cC------Ccch
Confidence            56788888888765  58999999999998 678999999999999875  589999999999 532 33      44  


Q ss_pred             HHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCC
Q 018965          154 RAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREF  204 (348)
Q Consensus       154 ~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~  204 (348)
                      .+|..+|+++.+.  .++.+.+.||.+|..    ..+.++|+.+|+++.+...
T Consensus        98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p  146 (177)
T 2e2e_A           98 AQTRAMIDKALALDSNEITALMLLASDAFM----QANYAQAIELWQKVMDLNS  146 (177)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cccHHHHHHHHHHHHhhCC
Confidence            8999999999874  679999999999876    4699999999999987654

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.08  E-value=2e-05  Score=63.04  Aligned_cols=93  Identities=16%  Similarity=0.219  Sum_probs=77.5

Q ss_pred             HHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhCC--C----
Q 018965           97 LEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASIG--H----  168 (348)
Q Consensus        97 ~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~G--~----  168 (348)
                      +.+..+||..++ ..+++++|+.+|++|.+.  .++.+.+++|.+|.. .|      ++++|+.+|++|.+..  +    
T Consensus         8 A~a~~~lG~~~~-~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~-~~------~~~~A~~~~~~al~~~~~~~~~~   79 (127)
T 4gcn_A            8 AIAEKDLGNAAY-KQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFE-EK------KFAECVQFCEKAVEVGRETRADY   79 (127)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHHHHTTCCH
T ss_pred             HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHH-hh------hHHHHHHHHHHHHHhCcccchhh
Confidence            456778999988 678999999999999875  578999999999974 33      7899999999998742  1    


Q ss_pred             ---HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965          169 ---VDAVRELGHCLQDGYGVRQNIEKGRRLLIEANA  201 (348)
Q Consensus       169 ---~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~  201 (348)
                         ..+.++||.+|..    ..++++|+.+|++|..
T Consensus        80 ~~~a~~~~~lg~~~~~----~~~~~~A~~~~~kal~  111 (127)
T 4gcn_A           80 KLIAKAMSRAGNAFQK----QNDLSLAVQWFHRSLS  111 (127)
T ss_dssp             HHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Confidence               3578889998875    5699999999999975

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.08  E-value=1.2e-06  Score=85.85  Aligned_cols=49  Identities=35%  Similarity=0.673  Sum_probs=40.3

Q ss_pred             ccccccCCCCCCCCccccccccCCCCCceeecChHHHHHhchhhchhcCCCCCCC
Q 018965          269 GLRLCSYSGCGRPETRVHEYRRCSVCGKVNYCSRACQAIDWKTRHKRECVPPLAP  323 (348)
Q Consensus       269 ~~~~C~~~~C~~~~~~~~~l~~C~~C~~~~YCs~~CQ~~~W~~~Hk~~C~~~~~~  323 (348)
                      ....|.+  |.+..   ..+.+|++|+.+.|||++||+.||+. ||.+|..++.+
T Consensus        46 ~~~~C~~--C~~~~---~~~~~C~~C~~~~yCs~~Cq~~~w~~-Hk~eC~~~~~~   94 (429)
T 3qwp_A           46 RGVVCDR--CLLGK---EKLMRCSQCRVAKYCSAKCQKKAWPD-HKRECKCLKSC   94 (429)
T ss_dssp             BTTBCTT--TCCBC---SSCEECTTTSCCEESSHHHHHHTHHH-HHHHHHHHHHT
T ss_pred             CCCcCcC--CCCcC---CCCCcCCCCCCcccCChhhhhhhhhh-hHHhhhhHHhc
Confidence            4557885  76542   26789999999999999999999995 99999877655

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.08  E-value=6.6e-05  Score=62.79  Aligned_cols=111  Identities=21%  Similarity=0.191  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .++|+.+|+++.+.  .++++.+.||.+|. ..++.++|+.+++++....  ++.+.+.+|.++..       ..+..++
T Consensus        21 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~a   92 (184)
T 3vtx_A           21 FDGAIRAYKKVLKADPNNVETLLKLGKTYM-DIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFM-------IDEKQAA   92 (184)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-------TTCHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH-------cCCHHHH
Confidence            78999999999886  68999999999998 6778999999999997654  78899999998864       3478999


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965          157 VALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE  203 (348)
Q Consensus       157 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G  203 (348)
                      ...+.++.+.  .+..+.+.+|.+|..    ..+.++|+..|+++.+..
T Consensus        93 ~~~~~~a~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~~l~~~  137 (184)
T 3vtx_A           93 IDALQRAIALNTVYADAYYKLGLVYDS----MGEHDKAIEAYEKTISIK  137 (184)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhCccchHHHHHHHHHHHH----hCCchhHHHHHHHHHHhc
Confidence            9999999864  689999999999876    568999999999998764

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.07  E-value=4.4e-05  Score=67.44  Aligned_cols=110  Identities=11%  Similarity=0.039  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHHC------CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccC
Q 018965           81 SDSAHRFLKRCVFA------GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKD  152 (348)
Q Consensus        81 ~~~A~~~~~kaA~~------G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d  152 (348)
                      .++|+..|+++.+.      +++.+.+.+|.+|. ..++.++|+.+|+++.+..  ++.+.+.||.+|.. .|      +
T Consensus        21 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~~------~   92 (275)
T 1xnf_A           21 QEVILARMEQILASRALTDDERAQLLYERGVLYD-SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ-AG------N   92 (275)
T ss_dssp             HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TT------C
T ss_pred             HHHHHHHHHHHHhcccccCchhHHHHHHHHHHHH-HcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-cc------C
Confidence            45566666665553      23455556665555 4455566666666655433  45566666665542 12      4


Q ss_pred             HHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          153 LRAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       153 ~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                      +++|+.+|+++.+.  .++.+.+.+|.+|..    ..++++|+.+|+++.+.
T Consensus        93 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~  140 (275)
T 1xnf_A           93 FDAAYEAFDSVLELDPTYNYAHLNRGIALYY----GGRDKLAQDDLLAFYQD  140 (275)
T ss_dssp             HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCccccHHHHHHHHHHHH----hccHHHHHHHHHHHHHh
Confidence            55666666665552  345566666665544    33556666666665543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.07  E-value=0.00014  Score=55.98  Aligned_cols=110  Identities=17%  Similarity=0.225  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .++|..+|+++.+.  .++.+.+.+|.++. ..++.++|+.+|+++.+.  .++.+.+.+|.+|..       ..++++|
T Consensus        17 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~A   88 (136)
T 2fo7_A           17 YDEAIEYYQKALELDPRSAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK-------QGDYDEA   88 (136)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-------TTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCcchhHHHHHHHHHH-HhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH-------hcCHHHH
Confidence            78999999998764  57889999999987 567999999999999875  467889999999863       2378999


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          157 VALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       157 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                      ..+|+++.+.  .+..+.+.+|.+|..    ..+.++|..+|+++.+.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           89 IEYYQKALELDPRSAEAWYNLGNAYYK----QGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHH----HccHHHHHHHHHHHHcc
Confidence            9999999875  468899999998875    56899999999998753

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.06  E-value=7.9e-05  Score=64.68  Aligned_cols=114  Identities=15%  Similarity=0.043  Sum_probs=96.8

Q ss_pred             cHHHHHHHHHHHHHC---CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHH
Q 018965           80 WSDSAHRFLKRCVFA---GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLR  154 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~---G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~  154 (348)
                      ..++|+.+|+++.+.   .++.+.+.+|.+|. ..++.++|+.+|++|.+..  ++.+.+.+|.+|.. .      .++.
T Consensus        22 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~------~~~~   93 (228)
T 4i17_A           22 NYAVAFEKYSEYLKLTNNQDSVTAYNCGVCAD-NIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRD-M------KNNQ   93 (228)
T ss_dssp             CHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHH-T------TCHH
T ss_pred             CHHHHHHHHHHHHhccCCCCcHHHHHHHHHHH-HhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH-c------ccHH
Confidence            378999999999885   57889999999998 6789999999999999875  68899999999964 2      3789


Q ss_pred             HHHHHHHHHHhC--CCH-------HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCH
Q 018965          155 AGVALCARAASI--GHV-------DAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFF  205 (348)
Q Consensus       155 ~A~~~~~kAA~~--G~~-------~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~  205 (348)
                      +|+.+|+++.+.  .++       .+.+.+|.+|..    ..+.++|+.+|++|.+....
T Consensus        94 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~  149 (228)
T 4i17_A           94 EYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQ----AGNIEKAEENYKHATDVTSK  149 (228)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHTTSSCH
T ss_pred             HHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHH----hccHHHHHHHHHHHHhcCCC
Confidence            999999999875  456       568888888865    56999999999999988655

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.06  E-value=5.3e-05  Score=78.88  Aligned_cols=111  Identities=20%  Similarity=0.139  Sum_probs=94.6

Q ss_pred             cHHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHH
Q 018965           80 WSDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRA  155 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~  155 (348)
                      ..++|+..|++|.+.  +++++.++||.+|. ..++.++|++.|++|.+.  +++.|.++||.+|.. .|      ++++
T Consensus        58 ~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~-~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~-~g------~~~e  129 (723)
T 4gyw_A           58 KLQEALMHYKEAIRISPTFADAYSNMGNTLK-EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD-SG------NIPE  129 (723)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC------CHHH
Confidence            388999999999875  68999999999998 678999999999999875  589999999999964 33      7899


Q ss_pred             HHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          156 GVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       156 A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                      |+.+|++|.+.  .++.+.++||.+|..    ..|.++|...|+++.+.
T Consensus       130 Ai~~~~~Al~l~P~~~~a~~~L~~~l~~----~g~~~~A~~~~~kal~l  174 (723)
T 4gyw_A          130 AIASYRTALKLKPDFPDAYCNLAHCLQI----VCDWTDYDERMKKLVSI  174 (723)
T ss_dssp             HHHHHHHHHHHCSCCHHHHHHHHHHHHH----TTCCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCChHHHhhhhhHHHh----cccHHHHHHHHHHHHHh
Confidence            99999999875  689999999999875    34667777777777653

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.06  E-value=3e-05  Score=62.76  Aligned_cols=95  Identities=14%  Similarity=0.162  Sum_probs=80.2

Q ss_pred             CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHHH
Q 018965           96 NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVDA  171 (348)
Q Consensus        96 ~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A  171 (348)
                      ++++.+.+|..++ ..+++++|+.+|+++....  ++.+.+.||.+|.. .|      ++++|+.+|++|.+.  .++.+
T Consensus        17 ~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g------~~~~A~~~~~~al~~~p~~~~~   88 (142)
T 2xcb_A           17 TLEQLYALGFNQY-QAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS-LG------LYEQALQSYSYGALMDINEPRF   88 (142)
T ss_dssp             HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTCTHH
T ss_pred             HHHHHHHHHHHHH-HHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-Hh------hHHHHHHHHHHHHhcCCCCcHH
Confidence            4567888888887 6789999999999998664  78999999999964 33      789999999999875  68899


Q ss_pred             HHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          172 VRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       172 ~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                      .+++|.+|..    ..++++|+.+|+++.+.
T Consensus        89 ~~~lg~~~~~----~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           89 PFHAAECHLQ----LGDLDGAESGFYSARAL  115 (142)
T ss_dssp             HHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence            9999999876    56899999999999764

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.06  E-value=2.9e-05  Score=63.84  Aligned_cols=103  Identities=11%  Similarity=0.103  Sum_probs=84.8

Q ss_pred             HHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHH
Q 018965           88 LKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARA  163 (348)
Q Consensus        88 ~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kA  163 (348)
                      |+++.+.  .++++.+.+|..++ ..+++.+|+..|+++.+.  .++.+.+.||.+|.. .|      ++++|+.+|++|
T Consensus        10 ~~~al~~~p~~~~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g------~~~~A~~~~~~a   81 (148)
T 2vgx_A           10 IAMLNEISSDTLEQLYSLAFNQY-QSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQA-MG------QYDLAIHSYSYG   81 (148)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHH
T ss_pred             HHHHHcCCHhhHHHHHHHHHHHH-HcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHH-Hh------hHHHHHHHHHHH
Confidence            4444433  35678899999988 678999999999999765  589999999999963 33      789999999999


Q ss_pred             HhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          164 ASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       164 A~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                      ...  .++.+.++||.+|..    ..+.++|+.+|++|.+.
T Consensus        82 l~l~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A           82 AVMDIXEPRFPFHAAECLLQ----XGELAEAESGLFLAQEL  118 (148)
T ss_dssp             HHHSTTCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HhcCCCCchHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence            864  689999999999875    56899999999999764

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.02  E-value=4.3e-05  Score=63.15  Aligned_cols=95  Identities=14%  Similarity=0.046  Sum_probs=79.0

Q ss_pred             CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHHH
Q 018965           96 NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVDA  171 (348)
Q Consensus        96 ~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A  171 (348)
                      ++++.+.+|.+|+ ..+++++|+.+|++|.+.  .++.+.+++|.+|.. .|      ++.+|+.+|+++.+.  .++.+
T Consensus        10 ~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g------~~~~A~~~~~~al~~~p~~~~~   81 (164)
T 3sz7_A           10 ESDKLKSEGNAAM-ARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSA-SG------QHEKAAEDAELATVVDPKYSKA   81 (164)
T ss_dssp             HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHH-cc------CHHHHHHHHHHHHHhCCCCHHH
Confidence            4567888888887 678999999999999875  478899999999864 23      789999999999874  67899


Q ss_pred             HHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          172 VRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       172 ~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                      .++||.+|..    ..++++|+.+|+++.+.
T Consensus        82 ~~~lg~~~~~----~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           82 WSRLGLARFD----MADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH----ccCHHHHHHHHHHHHHh
Confidence            9999998876    46899999999998754

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.02  E-value=3.8e-05  Score=61.39  Aligned_cols=92  Identities=11%  Similarity=-0.024  Sum_probs=80.5

Q ss_pred             cHHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHH
Q 018965           80 WSDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRA  155 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~  155 (348)
                      ..++|+..|++|.+.  .++.+.+++|.+|. ..++.++|+..|++|.+.  .++.+.+++|.+|.. .|      ++++
T Consensus        28 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~~------~~~~   99 (126)
T 4gco_A           28 DYPTAMRHYNEAVKRDPENAILYSNRAACLT-KLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA-MR------EWSK   99 (126)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHhhHHH-hhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-CC------CHHH
Confidence            378999999999875  68999999999998 678999999999999875  589999999999964 33      7899


Q ss_pred             HHHHHHHHHhC--CCHHHHHHHHHHH
Q 018965          156 GVALCARAASI--GHVDAVRELGHCL  179 (348)
Q Consensus       156 A~~~~~kAA~~--G~~~A~~~Lg~~y  179 (348)
                      |+++|++|.+.  .+.++...|+.++
T Consensus       100 A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A          100 AQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            99999999875  7899999998864

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.99  E-value=2.2e-06  Score=85.26  Aligned_cols=49  Identities=31%  Similarity=0.682  Sum_probs=40.0

Q ss_pred             ccccccCCCCCCCCccccccccCCCCCceeecChHHHHHhchhhchhcCCCCCCC
Q 018965          269 GLRLCSYSGCGRPETRVHEYRRCSVCGKVNYCSRACQAIDWKTRHKRECVPPLAP  323 (348)
Q Consensus       269 ~~~~C~~~~C~~~~~~~~~l~~C~~C~~~~YCs~~CQ~~~W~~~Hk~~C~~~~~~  323 (348)
                      ....|.+  |.+..   ..+.+|++|+.+.|||++||+.||+. ||.+|..++.+
T Consensus        48 ~~~~C~~--C~~~~---~~~~~C~~C~~~~yCs~~Cq~~~w~~-Hk~eC~~~~~~   96 (490)
T 3n71_A           48 INFVCHT--CFKRQ---EKLHRCGQCKFAHYCDRTCQKDAWLN-HKNECAAIKKY   96 (490)
T ss_dssp             TTTBCTT--TCCBC---SCCEECTTTSCCEESSHHHHHHHHHH-HHHHHHHHHHH
T ss_pred             cCCcCCC--CCCCC---CCCCCCCCCCCcCcCCHHHhhhhhhH-HHHHhHHHHhc
Confidence            4557885  66532   35799999999999999999999995 99999877654

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=97.99  E-value=8.7e-05  Score=58.24  Aligned_cols=95  Identities=13%  Similarity=0.074  Sum_probs=79.1

Q ss_pred             HHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHHHH
Q 018965           97 LEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVDAV  172 (348)
Q Consensus        97 ~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~  172 (348)
                      +++.+.+|..++ ..+++++|+.+|++|.+.  .++.+.+++|.+|.. .      .++.+|+.+|+++.+.  .++.+.
T Consensus         4 a~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~-~------~~~~~A~~~~~~al~~~p~~~~~~   75 (126)
T 3upv_A            4 AEEARLEGKEYF-TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK-L------MSFPEAIADCNKAIEKDPNFVRAY   75 (126)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-T------TCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-h------cCHHHHHHHHHHHHHhCCCcHHHH
Confidence            467788888887 678999999999999875  478999999999974 2      3789999999999874  678999


Q ss_pred             HHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965          173 RELGHCLQDGYGVRQNIEKGRRLLIEANARE  203 (348)
Q Consensus       173 ~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G  203 (348)
                      +.+|.+|..    ..+.++|+.+|+++.+..
T Consensus        76 ~~lg~~~~~----~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           76 IRKATAQIA----VKEYASALETLDAARTKD  102 (126)
T ss_dssp             HHHHHHHHH----TTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH----HhCHHHHHHHHHHHHHhC
Confidence            999998876    458999999999998754

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=97.96  E-value=5.2e-05  Score=67.50  Aligned_cols=118  Identities=13%  Similarity=0.010  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHHHC--CC---HHHHHHhhhhhhhccCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHcc-CCCCCC
Q 018965           81 SDSAHRFLKRCVFA--GN---LEACYTLGMIRFYCLQNRSSGTSLMAKAAMK-----SHAPALYSLAVIQFNG-SGGGKN  149 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~---~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~-----G~~~A~~~Lg~~y~~G-~g~~~~  149 (348)
                      .++|+..|+++.+.  ++   +++.+.||.+|+ ..+++++|+.+|+++.+.     ..+.+.|.+|.+|... ......
T Consensus        31 ~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~  109 (261)
T 3qky_A           31 YDRAIEYFKAVFTYGRTHEWAADAQFYLARAYY-QNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELD  109 (261)
T ss_dssp             HHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSC
T ss_pred             HHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhccccccc
Confidence            78999999999886  46   899999999998 678999999999999986     3378999999999752 110001


Q ss_pred             ccCHHHHHHHHHHHHhC--CCHHHH-----------------HHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965          150 EKDLRAGVALCARAASI--GHVDAV-----------------RELGHCLQDGYGVRQNIEKGRRLLIEANARE  203 (348)
Q Consensus       150 ~~d~~~A~~~~~kAA~~--G~~~A~-----------------~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G  203 (348)
                      ..++.+|+.+|+++.+.  .++.+.                 +.+|.+|..    ..++++|+..|+++.+..
T Consensus       110 ~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~  178 (261)
T 3qky_A          110 QTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYER----RELYEAAAVTYEAVFDAY  178 (261)
T ss_dssp             CHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             chhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHC
Confidence            34789999999999874  333333                 889998876    569999999999998753

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=97.96  E-value=0.00018  Score=58.99  Aligned_cols=110  Identities=17%  Similarity=0.182  Sum_probs=91.6

Q ss_pred             cHHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHH
Q 018965           80 WSDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRA  155 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~  155 (348)
                      ..++|..+|+++.+.  .++.+.+.+|.+|. ..++.++|+.+|+++.+.  .++.+.+.+|.+|.. .|      ++++
T Consensus        57 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~------~~~~  128 (186)
T 3as5_A           57 AVDRGTELLERSLADAPDNVKVATVLGLTYV-QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDN-LG------RFDE  128 (186)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHH
T ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHH-cC------cHHH
Confidence            378999999998775  57889999999887 677899999999998775  578899999998864 33      7899


Q ss_pred             HHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965          156 GVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANA  201 (348)
Q Consensus       156 A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~  201 (348)
                      |..+|+++.+.  .++.+.+.+|.+|..    ..+.++|..+|+++.+
T Consensus       129 A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~  172 (186)
T 3as5_A          129 AIDSFKIALGLRPNEGKVHRAIAFSYEQ----MGRHEEALPHFKKANE  172 (186)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCccchHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Confidence            99999998875  578899999998875    4589999999999865

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=97.96  E-value=8.5e-05  Score=57.81  Aligned_cols=95  Identities=9%  Similarity=0.035  Sum_probs=66.7

Q ss_pred             CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHHH
Q 018965           96 NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVDA  171 (348)
Q Consensus        96 ~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A  171 (348)
                      ++.+++.+|..+. ..++.++|+.+|+++.+..  ++.+.+.+|.+|..       ..++++|+.+|+++.+.  .++.+
T Consensus        15 ~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-------~~~~~~A~~~~~~a~~~~~~~~~~   86 (133)
T 2lni_A           15 LALMVKNKGNECF-QKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK-------LLEFQLALKDCEECIQLEPTFIKG   86 (133)
T ss_dssp             HHHHHHHHHHHHH-HTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTT-------TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             cHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-------hccHHHHHHHHHHHHHhCCCchHH
Confidence            4566777777776 5667777888888777653  67777778877742       23677788888777764  46777


Q ss_pred             HHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          172 VRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       172 ~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                      .+.+|.+|..    ..+.++|+.+|+++.+.
T Consensus        87 ~~~la~~~~~----~~~~~~A~~~~~~~~~~  113 (133)
T 2lni_A           87 YTRKAAALEA----MKDYTKAMDVYQKALDL  113 (133)
T ss_dssp             HHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH----HhhHHHHHHHHHHHHHh
Confidence            7778877764    34777888888777654

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=97.96  E-value=0.00016  Score=62.52  Aligned_cols=115  Identities=15%  Similarity=0.032  Sum_probs=88.5

Q ss_pred             CcHHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHc-cCCCCCCccCH
Q 018965           79 NWSDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFN-GSGGGKNEKDL  153 (348)
Q Consensus        79 ~~~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~-G~g~~~~~~d~  153 (348)
                      ...++|+.+|+++.+.  .++++.+.||.+|. ..++.++|+.+|+++.+.  +++.+.++||.+|.. |.      .+.
T Consensus        68 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~------~~~  140 (208)
T 3urz_A           68 RNYDKAYLFYKELLQKAPNNVDCLEACAEMQV-CRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE------QEK  140 (208)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH------HHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH------HHH
Confidence            3489999999999876  58999999999998 678999999999999875  589999999999853 32      356


Q ss_pred             HHHHHHHHHHHhCCC-HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCC
Q 018965          154 RAGVALCARAASIGH-VDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREF  204 (348)
Q Consensus       154 ~~A~~~~~kAA~~G~-~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~  204 (348)
                      .++...|.++..... ..+.|++|..+..    ..++++|+.+|++|.+...
T Consensus       141 ~~~~~~~~~~~~~~~~~~a~~~~g~~~~~----~~~~~~A~~~~~~al~l~P  188 (208)
T 3urz_A          141 KKLETDYKKLSSPTKMQYARYRDGLSKLF----TTRYEKARNSLQKVILRFP  188 (208)
T ss_dssp             HHHHHHHC---CCCHHHHHHHHHHHHHHH----HHTHHHHHHHHHHHTTTSC
T ss_pred             HHHHHHHHHHhCCCchhHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCC
Confidence            677778877765432 2367788876654    3588999999999987543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=97.95  E-value=5.4e-05  Score=74.48  Aligned_cols=126  Identities=13%  Similarity=0.062  Sum_probs=102.4

Q ss_pred             H-HHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHc-cCCCCCCc----c
Q 018965           81 S-DSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS-HAPALYSLAVIQFN-GSGGGKNE----K  151 (348)
Q Consensus        81 ~-~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G-~~~A~~~Lg~~y~~-G~g~~~~~----~  151 (348)
                      . ++|..+|+++.+.  .++++.+.||.+|. ..+++++|+.+|++|.+.. ++.++++||.+|.. +.+   ..    .
T Consensus       118 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~---~~~~~~g  193 (474)
T 4abn_A          118 YSPEAEVLLSKAVKLEPELVEAWNQLGEVYW-KKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTD---SGDEHSR  193 (474)
T ss_dssp             CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCS---CHHHHHH
T ss_pred             cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccC---Chhhhhh
Confidence            5 8999999999775  57999999999998 6789999999999999865 47899999999976 333   33    6


Q ss_pred             CHHHHHHHHHHHHhC--CCHHHHHHHHHHHhcc---CC-CCCCHHHHHHHHHHHHhc-----CCHHHHHh
Q 018965          152 DLRAGVALCARAASI--GHVDAVRELGHCLQDG---YG-VRQNIEKGRRLLIEANAR-----EFFQSVSK  210 (348)
Q Consensus       152 d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G---~G-v~~d~~~A~~w~~~Aa~~-----G~~~A~~~  210 (348)
                      ++++|+.+|++|.+.  .++.+.++||.+|..-   .| -..++++|+.+|++|.+.     .++.+..+
T Consensus       194 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~  263 (474)
T 4abn_A          194 HVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLN  263 (474)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHH
Confidence            789999999999875  6899999999988641   11 225899999999999885     45555554

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=97.94  E-value=0.00014  Score=71.43  Aligned_cols=124  Identities=15%  Similarity=0.067  Sum_probs=100.7

Q ss_pred             cHHHHHHHHHHHHHCC-CHHHHHHhhhhhhhcc---------CCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcc---C
Q 018965           80 WSDSAHRFLKRCVFAG-NLEACYTLGMIRFYCL---------QNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNG---S  144 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~G-~~~A~~~Lg~~y~~~~---------~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G---~  144 (348)
                      ..++|..+|+++.+.. ++.+++.||.+|. ..         ++.++|+.+|++|.+.  .++.++++||.+|..-   .
T Consensus       152 ~~~~A~~~~~~al~~~p~~~~~~~lg~~~~-~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~  230 (474)
T 4abn_A          152 DVTSAHTCFSGALTHCKNKVSLQNLSMVLR-QLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNT  230 (474)
T ss_dssp             CHHHHHHHHHHHHTTCCCHHHHHHHHHHHT-TCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHhhCCCHHHHHHHHHHHH-HhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhh
Confidence            3889999999998864 5789999999988 44         7899999999999876  5789999999999642   1


Q ss_pred             CCCCCccCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc--CCHHHHHh
Q 018965          145 GGGKNEKDLRAGVALCARAASI-----GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR--EFFQSVSK  210 (348)
Q Consensus       145 g~~~~~~d~~~A~~~~~kAA~~-----G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~--G~~~A~~~  210 (348)
                      |.  ...++++|+.+|++|.+.     .++.+.++||.+|..    ..++++|+.+|++|.+.  +++.+...
T Consensus       231 ~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~a~~~  297 (474)
T 4abn_A          231 GQ--NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKY----EESYGEALEGFSQAAALDPAWPEPQQR  297 (474)
T ss_dssp             TC--CHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             cc--ccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            20  235899999999999873     689999999999986    46999999999999765  34444443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.94  E-value=0.00012  Score=57.87  Aligned_cols=97  Identities=16%  Similarity=0.141  Sum_probs=82.2

Q ss_pred             CCCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCH
Q 018965           94 AGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHV  169 (348)
Q Consensus        94 ~G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~  169 (348)
                      ..++.+.+.+|..++ ..+++++|+.+|+++.+.  .++.+.+.+|.+|..       ..++.+|+.+|+++.+.  .++
T Consensus         6 ~~~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-------~~~~~~A~~~~~~al~~~p~~~   77 (137)
T 3q49_B            6 SPSAQELKEQGNRLF-VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-------MQQPEQALADCRRALELDGQSV   77 (137)
T ss_dssp             CCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCH
T ss_pred             cccHHHHHHHHHHHH-HhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHhCchhH
Confidence            357888999999988 678999999999999875  478899999999974       23789999999999864  678


Q ss_pred             HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          170 DAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       170 ~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                      .+.+.||.+|..    ..+..+|+.+|++|.+.
T Consensus        78 ~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~  106 (137)
T 3q49_B           78 KAHFFLGQCQLE----MESYDEAIANLQRAYSL  106 (137)
T ss_dssp             HHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH----HhhHHHHHHHHHHHHHH
Confidence            999999999876    45899999999999864

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=97.94  E-value=0.00049  Score=58.33  Aligned_cols=111  Identities=13%  Similarity=0.095  Sum_probs=92.8

Q ss_pred             cHHHHHHHHHHHHHC--CCHHHHHHhhhhhhhcc-CCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHccCCCCCCccC
Q 018965           80 WSDSAHRFLKRCVFA--GNLEACYTLGMIRFYCL-QNRSSGTSLMAKAAMK----SHAPALYSLAVIQFNGSGGGKNEKD  152 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~-~d~~~A~~~~~~AA~~----G~~~A~~~Lg~~y~~G~g~~~~~~d  152 (348)
                      ..++|..+|+++.+.  .++.+.+.+|.+|. .. ++.++|+.+|+++.+.    .++.+.+.+|.+|.. .|      +
T Consensus        57 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~------~  128 (225)
T 2vq2_A           57 VNDKAQESFRQALSIKPDSAEINNNYGWFLC-GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAK-QG------Q  128 (225)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHH-TT------C
T ss_pred             ChHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHH-cC------C
Confidence            378999999998875  47889999999988 56 8999999999999882    236889999999864 23      7


Q ss_pred             HHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          153 LRAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       153 ~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                      +++|+.+|+++.+.  .++.+.+.||.+|..    ..+.++|..+|+++.+.
T Consensus       129 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~  176 (225)
T 2vq2_A          129 FGLAEAYLKRSLAAQPQFPPAFKELARTKML----AGQLGDADYYFKKYQSR  176 (225)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCchHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence            89999999999874  578999999998875    45899999999998775

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=97.92  E-value=0.00026  Score=60.14  Aligned_cols=112  Identities=13%  Similarity=-0.004  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .++|+.+|+++.+.  .++.+.+.+|.+|. ..++.++|+.+|+++.+..  ++.+.+.+|.+|..-.|      ++++|
T Consensus        24 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~------~~~~A   96 (225)
T 2vq2_A           24 YRQATASIEDALKSDPKNELAWLVRAEIYQ-YLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLN------RPAES   96 (225)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC------CHHHH
T ss_pred             HHHHHHHHHHHHHhCccchHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcC------cHHHH
Confidence            78999999998875  57899999999998 6779999999999998754  78899999999964213      89999


Q ss_pred             HHHHHHHHhC----CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965          157 VALCARAASI----GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE  203 (348)
Q Consensus       157 ~~~~~kAA~~----G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G  203 (348)
                      +.+|+++.+.    .+..+.+.+|.+|..    ..+.++|+.+|+++.+..
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~  143 (225)
T 2vq2_A           97 MAYFDKALADPTYPTPYIANLNKGICSAK----QGQFGLAEAYLKRSLAAQ  143 (225)
T ss_dssp             HHHHHHHHTSTTCSCHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHcCcCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Confidence            9999999982    337899999999876    468999999999998754

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=97.92  E-value=0.00032  Score=60.55  Aligned_cols=112  Identities=21%  Similarity=0.258  Sum_probs=89.7

Q ss_pred             cHHHHHHHHHHHHHCC--CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHH
Q 018965           80 WSDSAHRFLKRCVFAG--NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRA  155 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~G--~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~  155 (348)
                      ..++|..+|+++.+..  ++.+.+.+|.+|. ..++.++|+.+|+++.+.  .++.+.+.+|.+|..       ..++++
T Consensus       106 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~  177 (243)
T 2q7f_A          106 MYKEAKDMFEKALRAGMENGDLFYMLGTVLV-KLEQPKLALPYLQRAVELNENDTEARFQFGMCLAN-------EGMLDE  177 (243)
T ss_dssp             CHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH-HTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-------HTCCHH
T ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-------cCCHHH
Confidence            3788999999887754  7888899998887 667889999999998875  478888899988864       225688


Q ss_pred             HHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965          156 GVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE  203 (348)
Q Consensus       156 A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G  203 (348)
                      |..+|+++.+.  .++.+.+.+|.+|..    ..|.++|..+|+++.+..
T Consensus       178 A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~  223 (243)
T 2q7f_A          178 ALSQFAAVTEQDPGHADAFYNAGVTYAY----KENREKALEMLDKAIDIQ  223 (243)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCTTHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHHH----ccCHHHHHHHHHHHHccC
Confidence            99999988764  568888999988875    457888999999887653

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.92  E-value=6.6e-05  Score=56.45  Aligned_cols=97  Identities=13%  Similarity=0.095  Sum_probs=77.6

Q ss_pred             CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--C--C
Q 018965           95 GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--G--H  168 (348)
Q Consensus        95 G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G--~  168 (348)
                      +++.+.+.+|.++. ..++.++|+.+|+++.+.  .++.+.+.+|.+|.. .      .++++|+.+|+++.+.  .  +
T Consensus         4 ~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~-~------~~~~~A~~~~~~a~~~~~~~~~   75 (112)
T 2kck_A            4 QNPEEYYLEGVLQY-DAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYN-L------ERYEEAVDCYNYVINVIEDEYN   75 (112)
T ss_dssp             SSTTGGGGHHHHHH-SSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-T------TCHHHHHHHHHHHHHTSCCTTC
T ss_pred             CcHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-c------cCHHHHHHHHHHHHHhCcccch
Confidence            45667788888887 677899999999998875  478889999998864 2      3689999999999875  4  7


Q ss_pred             HHHHHHHHHHHhccCCCC-CCHHHHHHHHHHHHhcC
Q 018965          169 VDAVRELGHCLQDGYGVR-QNIEKGRRLLIEANARE  203 (348)
Q Consensus       169 ~~A~~~Lg~~y~~G~Gv~-~d~~~A~~w~~~Aa~~G  203 (348)
                      ..+.+.+|.+|..    . .+.++|+.+|+++....
T Consensus        76 ~~~~~~l~~~~~~----~~~~~~~A~~~~~~~~~~~  107 (112)
T 2kck_A           76 KDVWAAKADALRY----IEGKEVEAEIAEARAKLEH  107 (112)
T ss_dssp             HHHHHHHHHHHTT----CSSCSHHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHHHHH----HhCCHHHHHHHHHHHhhcc
Confidence            8899999998875    4 58889999999887543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=97.87  E-value=0.00015  Score=67.41  Aligned_cols=110  Identities=12%  Similarity=0.077  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHHCC----CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHH
Q 018965           81 SDSAHRFLKRCVFAG----NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLR  154 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G----~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~  154 (348)
                      .++|..+|+++.+..    ++.+.+.||.+|. ..++.++|+.+|+++.+.  .++.+.+.||.+|.. .|      +++
T Consensus       193 ~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g------~~~  264 (365)
T 4eqf_A          193 LEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH-LSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLAN-GD------RSE  264 (365)
T ss_dssp             HHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHH
T ss_pred             HHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC------CHH
Confidence            789999999998864    7899999999998 678999999999999875  578999999999975 33      789


Q ss_pred             HHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          155 AGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       155 ~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                      +|+.+|+++.+.  .++.+.+.||.+|..    ..++++|+.+|++|.+.
T Consensus       265 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~  310 (365)
T 4eqf_A          265 EAVEAYTRALEIQPGFIRSRYNLGISCIN----LGAYREAVSNFLTALSL  310 (365)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCchHHHHHHHHHHHH----CCCHHHHHHHHHHHHHh
Confidence            999999999874  679999999999875    35889999999999763

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=97.86  E-value=0.0002  Score=62.59  Aligned_cols=112  Identities=7%  Similarity=0.055  Sum_probs=87.3

Q ss_pred             cHHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHccCCCCCCccCH
Q 018965           80 WSDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAM----KSHAPALYSLAVIQFNGSGGGKNEKDL  153 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~----~G~~~A~~~Lg~~y~~G~g~~~~~~d~  153 (348)
                      ..++|..+|+++.+.  .++.+.+.+|.+|. ..++.++|+.+|+++.+    ..++.+.+.+|.+|.. .|      ++
T Consensus        86 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g------~~  157 (252)
T 2ho1_A           86 EPKLADEEYRKALASDSRNARVLNNYGGFLY-EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQ-MK------KP  157 (252)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH-TT------CH
T ss_pred             CHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH-HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHH-cC------CH
Confidence            378888888888765  57888888888887 56788889999988876    3456788888888864 23      67


Q ss_pred             HHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965          154 RAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE  203 (348)
Q Consensus       154 ~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G  203 (348)
                      ++|..+|+++.+.  .++.+.+.||.+|..    ..+.++|..+|+++.+..
T Consensus       158 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~  205 (252)
T 2ho1_A          158 AQAKEYFEKSLRLNRNQPSVALEMADLLYK----EREYVPARQYYDLFAQGG  205 (252)
T ss_dssp             HHHHHHHHHHHHHCSCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHhcCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Confidence            8888888888764  468888888888765    458888998888887654

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.85  E-value=0.00024  Score=53.70  Aligned_cols=96  Identities=9%  Similarity=0.034  Sum_probs=71.3

Q ss_pred             CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHHH
Q 018965           96 NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVDA  171 (348)
Q Consensus        96 ~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A  171 (348)
                      .+++.+.+|..++ ..++.++|+.+|+++.+.  .++.+.+.+|.+|..       ..++.+|..+|+++.+.  .++.+
T Consensus         3 ~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-------~~~~~~A~~~~~~~~~~~~~~~~~   74 (118)
T 1elw_A            3 QVNELKEKGNKAL-SVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK-------KGDYQKAYEDGCKTVDLKPDWGKG   74 (118)
T ss_dssp             HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh-------hccHHHHHHHHHHHHHhCcccHHH
Confidence            3566777787776 567888888888888665  467888888888763       23678888888888764  46778


Q ss_pred             HHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965          172 VRELGHCLQDGYGVRQNIEKGRRLLIEANARE  203 (348)
Q Consensus       172 ~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G  203 (348)
                      .+.+|.+|..    ..+.++|..+|+++.+..
T Consensus        75 ~~~~a~~~~~----~~~~~~A~~~~~~~~~~~  102 (118)
T 1elw_A           75 YSRKAAALEF----LNRFEEAKRTYEEGLKHE  102 (118)
T ss_dssp             HHHHHHHHHH----TTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHH----HhhHHHHHHHHHHHHHcC
Confidence            8888887765    347888888888887654

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=97.85  E-value=0.00078  Score=58.70  Aligned_cols=112  Identities=6%  Similarity=0.009  Sum_probs=95.2

Q ss_pred             cHHHHHHHHHHHHH----CCCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCH
Q 018965           80 WSDSAHRFLKRCVF----AGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDL  153 (348)
Q Consensus        80 ~~~~A~~~~~kaA~----~G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~  153 (348)
                      ..++|..+|+++.+    ..++.+.+.+|.+|. ..++.++|+.+|+++.+..  ++.+.+.||.+|.. .      .++
T Consensus       120 ~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~------g~~  191 (252)
T 2ho1_A          120 RYEEAYQRLLEASQDTLYPERSRVFENLGLVSL-QMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYK-E------REY  191 (252)
T ss_dssp             CHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-T------TCH
T ss_pred             HHHHHHHHHHHHHhCccCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-c------CCH
Confidence            38899999999977    346789999999988 6789999999999998754  78999999999964 2      378


Q ss_pred             HHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965          154 RAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE  203 (348)
Q Consensus       154 ~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G  203 (348)
                      ++|..+|+++.+.  .+..+.+.++.+|..    ..|.++|..+|+++.+..
T Consensus       192 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~~~~~~  239 (252)
T 2ho1_A          192 VPARQYYDLFAQGGGQNARSLLLGIRLAKV----FEDRDTAASYGLQLKRLY  239 (252)
T ss_dssp             HHHHHHHHHHHTTSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhCcCcHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHC
Confidence            9999999999875  578899999998875    459999999999997754

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=97.84  E-value=0.00017  Score=62.58  Aligned_cols=100  Identities=12%  Similarity=-0.012  Sum_probs=85.5

Q ss_pred             HHCCCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--
Q 018965           92 VFAGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK---SHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--  166 (348)
Q Consensus        92 A~~G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~---G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--  166 (348)
                      +...++++.+.+|..|+ ..+++++|+.+|+++.+.   .+..+.+.+|.+|.. .      .++++|+.+|++|.+.  
T Consensus         2 a~~~~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~-~------~~~~~A~~~~~~al~~~p   73 (228)
T 4i17_A            2 AQTTDPNQLKNEGNDAL-NAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADN-I------KKYKEAADYFDIAIKKNY   73 (228)
T ss_dssp             --CCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH-T------TCHHHHHHHHHHHHHTTC
T ss_pred             ccccCHHHHHHHHHHHH-HccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH-h------hcHHHHHHHHHHHHHhCc
Confidence            44568899999999998 678999999999999985   468899999999974 2      3799999999999986  


Q ss_pred             CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965          167 GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE  203 (348)
Q Consensus       167 G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G  203 (348)
                      .++.+.+.+|.+|..    ..+.++|+.+|+++.+..
T Consensus        74 ~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~  106 (228)
T 4i17_A           74 NLANAYIGKSAAYRD----MKNNQEYIATLTEGIKAV  106 (228)
T ss_dssp             SHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHS
T ss_pred             chHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHC
Confidence            478899999999976    469999999999998754

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.84  E-value=0.00012  Score=56.47  Aligned_cols=96  Identities=15%  Similarity=0.172  Sum_probs=80.4

Q ss_pred             HHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhCC--C----
Q 018965           97 LEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASIG--H----  168 (348)
Q Consensus        97 ~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~G--~----  168 (348)
                      +++.+.+|..+. ..++.++|+.+|+++.+..  ++.+.+.+|.+|..       ..++++|+.+|+++.+..  +    
T Consensus         4 ~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-------~~~~~~A~~~~~~~~~~~~~~~~~~   75 (131)
T 1elr_A            4 ALKEKELGNDAY-KKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE-------KGDYNKCRELCEKAIEVGRENREDY   75 (131)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-------hccHHHHHHHHHHHHhhccccchhH
Confidence            467888999887 6789999999999998764  78899999999964       237899999999998753  3    


Q ss_pred             ---HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCC
Q 018965          169 ---VDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREF  204 (348)
Q Consensus       169 ---~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~  204 (348)
                         +.+.+.+|.+|..    ..+.++|..+|+++.+...
T Consensus        76 ~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~~  110 (131)
T 1elr_A           76 RQIAKAYARIGNSYFK----EEKYKDAIHFYNKSLAEHR  110 (131)
T ss_dssp             HHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhCC
Confidence               7899999999876    4689999999999988643

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.84  E-value=0.00025  Score=56.28  Aligned_cols=97  Identities=14%  Similarity=0.078  Sum_probs=77.2

Q ss_pred             CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--C
Q 018965           95 GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKSH-----APALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--G  167 (348)
Q Consensus        95 G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G~-----~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G  167 (348)
                      .++.+++.+|..++ ..+++++|+.+|+++.+...     ..+.+.+|.+|.. .      .++++|+.+|+++.+.  .
T Consensus        26 ~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~-~------~~~~~A~~~~~~~~~~~~~   97 (148)
T 2dba_A           26 SSVEQLRKEGNELF-KCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLK-L------EDYDKAETEASKAIEKDGG   97 (148)
T ss_dssp             CCHHHHHHHHHHHH-TTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-T------TCHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH-H------ccHHHHHHHHHHHHhhCcc
Confidence            46777888888887 67789999999999987653     6788889988864 2      3788999999988764  5


Q ss_pred             CHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965          168 HVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE  203 (348)
Q Consensus       168 ~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G  203 (348)
                      ++.+.+.+|.+|..    ..+.++|+.+|+++.+..
T Consensus        98 ~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~  129 (148)
T 2dba_A           98 DVKALYRRSQALEK----LGRLDQAVLDLQRCVSLE  129 (148)
T ss_dssp             CHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcC
Confidence            78889999988875    458899999999887653

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=97.81  E-value=0.00037  Score=57.11  Aligned_cols=93  Identities=13%  Similarity=0.111  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .++|..+|+++.+.  .++++.+.||.+|. ..++.++|+..|++|.+.  .++.+.++||.+|..-.-      ..+.+
T Consensus        47 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~------~~~aa  119 (150)
T 4ga2_A           47 YDLAKKYICTYINVQERDPKAHRFLGLLYE-LEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDV------TDGRA  119 (150)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCS------SSSHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------hHHHH
Confidence            78999999999875  69999999999998 678999999999999976  489999999999864211      22344


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHh
Q 018965          157 VALCARAASI--GHVDAVRELGHCLQ  180 (348)
Q Consensus       157 ~~~~~kAA~~--G~~~A~~~Lg~~y~  180 (348)
                      ..|+++|.+.  +++.+....+.++.
T Consensus       120 ~~~~~~al~l~P~~~~~~~l~~~ll~  145 (150)
T 4ga2_A          120 KYWVERAAKLFPGSPAVYKLKEQLLD  145 (150)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence            5567888764  78888877777764

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.80  E-value=0.00014  Score=56.80  Aligned_cols=94  Identities=13%  Similarity=0.142  Sum_probs=74.7

Q ss_pred             HHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCH---HHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CC-
Q 018965           97 LEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHA---PALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GH-  168 (348)
Q Consensus        97 ~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~---~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~-  168 (348)
                      +++.|.+|..++ ..+++++|+..|+++.+.  +++   .+.+.+|.+|.. .      .++++|+.+|+++.+.  .+ 
T Consensus         2 ~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~-~------~~~~~A~~~~~~~~~~~p~~~   73 (129)
T 2xev_A            2 ARTAYNVAFDAL-KNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYA-T------RNFQLAEAQFRDLVSRYPTHD   73 (129)
T ss_dssp             -CCHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHH-T------TCHHHHHHHHHHHHHHCTTST
T ss_pred             cHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH-h------ccHHHHHHHHHHHHHHCCCCc
Confidence            345778888877 677899999999998874  355   789999998864 2      3789999999998874  45 


Q ss_pred             --HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          169 --VDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       169 --~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                        +.+.+.+|.+|..    ..+.++|+.+|+++.+.
T Consensus        74 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           74 KAAGGLLKLGLSQYG----EGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             THHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence              7889999998875    45899999999998865

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=97.79  E-value=0.00021  Score=58.46  Aligned_cols=111  Identities=14%  Similarity=0.126  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .++|+.+|+++.+.  .++.+.+.+|.+|. ..++.++|+.+|+++.+.  .++.+.+.+|.+|..       ..++++|
T Consensus        24 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-------~~~~~~A   95 (186)
T 3as5_A           24 YSQAVMLLEQVYDADAFDVDVALHLGIAYV-KTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQ-------VQKYDLA   95 (186)
T ss_dssp             HHHHHHHHTTTCCTTSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-------HTCHHHH
T ss_pred             HHHHHHHHHHHHHhCccChHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-------hcCHHHH
Confidence            67889999987765  57899999999998 678999999999999876  578899999999864       2378999


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965          157 VALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE  203 (348)
Q Consensus       157 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G  203 (348)
                      ..+|+++.+.  .++.+.+.+|.+|..    ..+.++|..+|+++.+..
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~  140 (186)
T 3as5_A           96 VPLLIKVAEANPINFNVRFRLGVALDN----LGRFDEAIDSFKIALGLR  140 (186)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhcCcHhHHHHHHHHHHHHH----cCcHHHHHHHHHHHHhcC
Confidence            9999999864  688999999998875    568999999999998764

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=97.79  E-value=0.00014  Score=62.87  Aligned_cols=109  Identities=13%  Similarity=0.098  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHH----------------hhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYT----------------LGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQ  140 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~----------------Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y  140 (348)
                      .++|+.+|+++.+.  .++++.+.                ||.+|. ..+++++|+.+|+++.+.  .++.+.+.||.+|
T Consensus        20 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   98 (208)
T 3urz_A           20 NGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYK-KNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQ   98 (208)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            78999999998876  46788888                999998 678999999999999876  4899999999999


Q ss_pred             HccCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHh-ccCCCCCCHHHHHHHHHHHH
Q 018965          141 FNGSGGGKNEKDLRAGVALCARAASI--GHVDAVRELGHCLQ-DGYGVRQNIEKGRRLLIEAN  200 (348)
Q Consensus       141 ~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~-~G~Gv~~d~~~A~~w~~~Aa  200 (348)
                      ..       ..++++|+.+|+++.+.  .++.+.++||.+|. .|.   .+...+...|+++.
T Consensus        99 ~~-------~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~---~~~~~~~~~~~~~~  151 (208)
T 3urz_A           99 VC-------RGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE---QEKKKLETDYKKLS  151 (208)
T ss_dssp             HH-------HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH---HHHHHHHHHHC---
T ss_pred             HH-------cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHh
Confidence            74       23789999999999874  78999999999874 331   23445555555554

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=97.78  E-value=0.00025  Score=62.60  Aligned_cols=111  Identities=11%  Similarity=0.047  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHHCC-C----HHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCH
Q 018965           81 SDSAHRFLKRCVFAG-N----LEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDL  153 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G-~----~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~  153 (348)
                      .++|+.+|+++.+.. +    +.+.+.+|.+|. ..++.++|+.+|+++.+.  .++.+.+.+|.+|.. .|      ++
T Consensus        53 ~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~------~~  124 (272)
T 3u4t_A           53 YDLAQKDIETYFSKVNATKAKSADFEYYGKILM-KKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYN-KG------NF  124 (272)
T ss_dssp             HHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH-TT------CH
T ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH-HcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-cc------CH
Confidence            778888888888743 1    445788888887 567888888888888775  467888888888864 23      78


Q ss_pred             HHHHHHHHHHHhC--CCHHHHHHHH-HHHhccCCCCCCHHHHHHHHHHHHhcCC
Q 018965          154 RAGVALCARAASI--GHVDAVRELG-HCLQDGYGVRQNIEKGRRLLIEANAREF  204 (348)
Q Consensus       154 ~~A~~~~~kAA~~--G~~~A~~~Lg-~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~  204 (348)
                      ++|+.+|+++.+.  .++.+.+.+| .+|..+     +.++|+..|+++.+...
T Consensus       125 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~a~~~~p  173 (272)
T 3u4t_A          125 PLAIQYMEKQIRPTTTDPKVFYELGQAYYYNK-----EYVKADSSFVKVLELKP  173 (272)
T ss_dssp             HHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhCc
Confidence            8888888888764  5788888888 788766     88888888888876543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=97.78  E-value=0.0012  Score=59.56  Aligned_cols=112  Identities=12%  Similarity=0.041  Sum_probs=93.0

Q ss_pred             cHHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHH
Q 018965           80 WSDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRA  155 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~  155 (348)
                      ..++|+..|+++.+.  ++..+.+.+|.+|. ..++.++|+.+|+++.+.  .++.+.+.+|.+|.. .      .++++
T Consensus       140 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~------~~~~~  211 (330)
T 3hym_B          140 EHDQAMAAYFTAAQLMKGCHLPMLYIGLEYG-LTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQ-N------GEWKT  211 (330)
T ss_dssp             CHHHHHHHHHHHHHHTTTCSHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-T------TCHHH
T ss_pred             CHHHHHHHHHHHHHhccccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-c------ccHHH
Confidence            378999999998875  46788999999988 677899999999999876  478899999999864 2      37899


Q ss_pred             HHHHHHHHHh-----------CCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965          156 GVALCARAAS-----------IGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE  203 (348)
Q Consensus       156 A~~~~~kAA~-----------~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G  203 (348)
                      |..+|+++.+           ..++.+.+.||.+|..    ..+.++|+.+|+++.+..
T Consensus       212 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~  266 (330)
T 3hym_B          212 AEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK----LKKYAEALDYHRQALVLI  266 (330)
T ss_dssp             HHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhhC
Confidence            9999999987           4557899999998875    458999999999998754

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=97.78  E-value=0.00029  Score=53.64  Aligned_cols=94  Identities=19%  Similarity=0.268  Sum_probs=65.9

Q ss_pred             HHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHHHH
Q 018965           97 LEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVDAV  172 (348)
Q Consensus        97 ~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~  172 (348)
                      +.+.+.+|.++. ..++.++|+.+|+++.+.  .++.+.+.+|.+|.. .|      ++++|+.+|+++.+.  .++.+.
T Consensus         9 ~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~------~~~~A~~~~~~~~~~~~~~~~~~   80 (125)
T 1na0_A            9 AEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QG------DYDEAIEYYQKALELDPNNAEAW   80 (125)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH-hC------CHHHHHHHHHHHHHhCCccHHHH
Confidence            566777777776 566777888888777654  357777777777753 22      677788888777654  467777


Q ss_pred             HHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          173 RELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       173 ~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                      +.+|.+|..    ..+.++|..+|+++.+.
T Consensus        81 ~~la~~~~~----~~~~~~A~~~~~~~~~~  106 (125)
T 1na0_A           81 YNLGNAYYK----QGDYDEAIEYYQKALEL  106 (125)
T ss_dssp             HHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH----hcCHHHHHHHHHHHHHh
Confidence            777777764    34777888888777654

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=97.77  E-value=0.001  Score=61.50  Aligned_cols=110  Identities=15%  Similarity=0.142  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC-------------------------------
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK-------------------------------  127 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~-------------------------------  127 (348)
                      .++|+.+|+++.+.  .++.+.+.||.+|. ..++.++|+.+|+++.+.                               
T Consensus       115 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  193 (365)
T 4eqf_A          115 EQAAIVALQRCLELQPNNLKALMALAVSYT-NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVL  193 (365)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHH
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhH
Confidence            67777777777664  46777777777766 344555566555555442                               


Q ss_pred             -------------C----CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCC
Q 018965          128 -------------S----HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQN  188 (348)
Q Consensus       128 -------------G----~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d  188 (348)
                                   .    ++.+.+.||.+|..       ..++++|+.+|+++.+.  .++.+.+.||.+|..    ..+
T Consensus       194 ~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~-------~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~  262 (365)
T 4eqf_A          194 EGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL-------SGEFNRAIDAFNAALTVRPEDYSLWNRLGATLAN----GDR  262 (365)
T ss_dssp             HHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTC
T ss_pred             HHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCC
Confidence                         2    56777788877753       23678888888887764  567788888887775    457


Q ss_pred             HHHHHHHHHHHHhc
Q 018965          189 IEKGRRLLIEANAR  202 (348)
Q Consensus       189 ~~~A~~w~~~Aa~~  202 (348)
                      +++|+.+|++|.+.
T Consensus       263 ~~~A~~~~~~al~~  276 (365)
T 4eqf_A          263 SEEAVEAYTRALEI  276 (365)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc
Confidence            88888888888765

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.77  E-value=0.00025  Score=64.67  Aligned_cols=112  Identities=10%  Similarity=-0.069  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHC----CC----HHHHHHhhhhhhhccCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHccC
Q 018965           81 SDSAHRFLKRCVFA----GN----LEACYTLGMIRFYCLQNRSSGTSLMAKAAMK----SH----APALYSLAVIQFNGS  144 (348)
Q Consensus        81 ~~~A~~~~~kaA~~----G~----~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~----G~----~~A~~~Lg~~y~~G~  144 (348)
                      .++|+..|++|.+.    |+    +.+..++|.+|. ..+++++|+.+|++|.+.    |+    +.+..+||.+|..-.
T Consensus        53 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~l  131 (292)
T 1qqe_A           53 LNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFK-SGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDL  131 (292)
T ss_dssp             THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh
Confidence            67888999988775    55    468899999998 567999999999999854    55    458889999997522


Q ss_pred             CCCCCccCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965          145 GGGKNEKDLRAGVALCARAASI----GH----VDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE  203 (348)
Q Consensus       145 g~~~~~~d~~~A~~~~~kAA~~----G~----~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G  203 (348)
                      |      ++++|+.+|++|.+.    |+    ..+..+||.+|..    ..++.+|+.+|+++.+..
T Consensus       132 g------~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~  188 (292)
T 1qqe_A          132 H------DYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL----DGQYIEASDIYSKLIKSS  188 (292)
T ss_dssp             C------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTT
T ss_pred             c------CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHH
Confidence            4      789999999999863    33    4578899998876    458999999999998753

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=97.76  E-value=0.00017  Score=72.05  Aligned_cols=116  Identities=17%  Similarity=0.125  Sum_probs=98.8

Q ss_pred             cHHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHH
Q 018965           80 WSDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRA  155 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~  155 (348)
                      ..++|...|+++.+.  .++.+.+.||.+|. ..++.++|+.+|++|.+.  +++.+.++||.+|.. .|      ++++
T Consensus        38 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g------~~~~  109 (568)
T 2vsy_A           38 DTTAGEMAVQRGLALHPGHPEAVARLGRVRW-TQQRHAEAAVLLQQASDAAPEHPGIALWLGHALED-AG------QAEA  109 (568)
T ss_dssp             CHHHHHHHHHHHHTTSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cC------CHHH
Confidence            388999999999886  57899999999998 678899999999999875  578999999999964 23      7899


Q ss_pred             HHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCC
Q 018965          156 GVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREF  204 (348)
Q Consensus       156 A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~  204 (348)
                      |.++|+++.+.  .++.+.++||.+|..- +--.+.++|...|+++.+.+.
T Consensus       110 A~~~~~~al~~~p~~~~~~~~l~~~~~~~-~~~g~~~~A~~~~~~al~~~p  159 (568)
T 2vsy_A          110 AAAAYTRAHQLLPEEPYITAQLLNWRRRL-CDWRALDVLSAQVRAAVAQGV  159 (568)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCCTTHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHh-hccccHHHHHHHHHHHHhcCC
Confidence            99999999875  6899999999998761 112589999999999998864

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=97.75  E-value=0.00034  Score=60.31  Aligned_cols=112  Identities=13%  Similarity=0.229  Sum_probs=93.3

Q ss_pred             cHHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHH
Q 018965           80 WSDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRA  155 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~  155 (348)
                      ..++|+..|+++.+.  .++.+.+.+|.+|. ..++.++|+.+|+++.+..  ++.+.+.+|.+|.. .|      ++++
T Consensus        72 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~------~~~~  143 (243)
T 2q7f_A           72 ELERALAFYDKALELDSSAATAYYGAGNVYV-VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVK-LE------QPKL  143 (243)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH-TS------CHHH
T ss_pred             CHHHHHHHHHHHHHcCCcchHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hc------cHHH
Confidence            378999999998875  47899999999988 6778999999999988764  78899999999864 23      7899


Q ss_pred             HHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965          156 GVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE  203 (348)
Q Consensus       156 A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G  203 (348)
                      |..+|+++.+.  .++.+.+.+|.+|..    ..+.++|+.+|+++.+..
T Consensus       144 A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~  189 (243)
T 2q7f_A          144 ALPYLQRAVELNENDTEARFQFGMCLAN----EGMLDEALSQFAAVTEQD  189 (243)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhCCccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Confidence            99999998864  578899999998865    447889999999988764

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.74  E-value=0.00015  Score=57.38  Aligned_cols=90  Identities=13%  Similarity=0.057  Sum_probs=61.8

Q ss_pred             HHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHH
Q 018965          101 YTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVDAVRELG  176 (348)
Q Consensus       101 ~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg  176 (348)
                      +.+|..++ ..++.++|+..|++|.+.  .++.+.+.||.+|.. .|      ++.+|+..|++|.+.  .++.+.+.||
T Consensus        21 ~~~g~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~g------~~~~A~~~~~~al~l~P~~~~~~~~la   92 (121)
T 1hxi_A           21 MEEGLSML-KLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE-NE------KDGLAIIALNHARMLDPKDIAVHAALA   92 (121)
T ss_dssp             HHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            44555555 456777788888777754  477788888877753 23      577788888887764  5677888888


Q ss_pred             HHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          177 HCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       177 ~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                      .+|..    ..+.++|+.+|+++.+.
T Consensus        93 ~~~~~----~g~~~~A~~~~~~al~~  114 (121)
T 1hxi_A           93 VSHTN----EHNANAALASLRAWLLS  114 (121)
T ss_dssp             HHHHH----HHHHHHHHHHHHHHHC-
T ss_pred             HHHHH----cCCHHHHHHHHHHHHHh
Confidence            77764    34677788887777653

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=97.72  E-value=0.00036  Score=69.68  Aligned_cols=91  Identities=14%  Similarity=-0.008  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .++|..+|+++.+.  .++.+.+.||.+|. ..++.++|+++|+++.+.  +++.+.++||.+|..- +   .-.+.++|
T Consensus        73 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-~---~~g~~~~A  147 (568)
T 2vsy_A           73 HAEAAVLLQQASDAAPEHPGIALWLGHALE-DAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRL-C---DWRALDVL  147 (568)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-T---CCTTHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-h---ccccHHHH
Confidence            77888888887764  56788888888877 567788888888888765  4677888888887642 1   11378888


Q ss_pred             HHHHHHHHhCC--CHHHHHHHH
Q 018965          157 VALCARAASIG--HVDAVRELG  176 (348)
Q Consensus       157 ~~~~~kAA~~G--~~~A~~~Lg  176 (348)
                      .+.|+++.+.+  +..+.+.|+
T Consensus       148 ~~~~~~al~~~p~~~~~~~~l~  169 (568)
T 2vsy_A          148 SAQVRAAVAQGVGAVEPFAFLS  169 (568)
T ss_dssp             HHHHHHHHHHTCCCSCHHHHTT
T ss_pred             HHHHHHHHhcCCcccChHHHhC
Confidence            88888887653  445555554

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=97.71  E-value=0.00054  Score=61.74  Aligned_cols=118  Identities=14%  Similarity=0.094  Sum_probs=99.2

Q ss_pred             cHHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHh-----------CCCHHHHHHHHHHHHccCCC
Q 018965           80 WSDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAM-----------KSHAPALYSLAVIQFNGSGG  146 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~-----------~G~~~A~~~Lg~~y~~G~g~  146 (348)
                      ..++|..+|+++.+.  .++.+.+.+|.+|. ..++.++|+.+|+++.+           ..++.+.+.||.+|.. .| 
T Consensus       174 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g-  250 (330)
T 3hym_B          174 NSKLAERFFSQALSIAPEDPFVMHEVGVVAF-QNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK-LK-  250 (330)
T ss_dssp             CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH-TT-
T ss_pred             hHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH-hc-
Confidence            378999999999886  57899999999998 67899999999999998           5567899999999964 23 


Q ss_pred             CCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC--CHHHHH
Q 018965          147 GKNEKDLRAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE--FFQSVS  209 (348)
Q Consensus       147 ~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G--~~~A~~  209 (348)
                           ++++|+.+|+++.+.  .++.+.+.||.+|..    ..+.++|..+|+++.+..  ++.+..
T Consensus       251 -----~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~  308 (330)
T 3hym_B          251 -----KYAEALDYHRQALVLIPQNASTYSAIGYIHSL----MGNFENAVDYFHTALGLRRDDTFSVT  308 (330)
T ss_dssp             -----CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH----HTCHHHHHHHHHTTTTTCSCCHHHHH
T ss_pred             -----CHHHHHHHHHHHHhhCccchHHHHHHHHHHHH----hccHHHHHHHHHHHHccCCCchHHHH
Confidence                 789999999999864  578999999999876    458999999999997654  444444

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=97.71  E-value=8.4e-05  Score=68.40  Aligned_cols=108  Identities=19%  Similarity=0.158  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHHC----CC----HHHHHHhhhhhhhccCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHccC
Q 018965           81 SDSAHRFLKRCVFA----GN----LEACYTLGMIRFYCLQNRSSGTSLMAKAAMK----SH----APALYSLAVIQFNGS  144 (348)
Q Consensus        81 ~~~A~~~~~kaA~~----G~----~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~----G~----~~A~~~Lg~~y~~G~  144 (348)
                      .++|...|.++++.    |+    ..+..++|.+|. ...++++|+.+|++|.+.    |+    ..+..+||.+|..  
T Consensus        52 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~--  128 (307)
T 2ifu_A           52 LEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLK-DLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP--  128 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc--
Confidence            67888888887764    34    457888888887 556889999999998754    44    4578899999965  


Q ss_pred             CCCCCccCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965          145 GGGKNEKDLRAGVALCARAASI----GH----VDAVRELGHCLQDGYGVRQNIEKGRRLLIEANA  201 (348)
Q Consensus       145 g~~~~~~d~~~A~~~~~kAA~~----G~----~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~  201 (348)
                      |      ++++|+.+|++|.+.    |+    ..+..+||.+|..    ..++.+|+.+|++|.+
T Consensus       129 g------~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~  183 (307)
T 2ifu_A          129 L------DLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVR----QQKFDEAAASLQKEKS  183 (307)
T ss_dssp             T------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             C------CHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Confidence            5      789999999999863    43    5678899998875    4589999999999986

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=97.71  E-value=0.00015  Score=68.25  Aligned_cols=110  Identities=12%  Similarity=0.067  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHHHC---------CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcc
Q 018965           81 SDSAHRFLKRCVFA---------GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK----SH----APALYSLAVIQFNG  143 (348)
Q Consensus        81 ~~~A~~~~~kaA~~---------G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~----G~----~~A~~~Lg~~y~~G  143 (348)
                      .++|+.++++|.+.         +...+.+.||.+|. ..+++++|+.+|++|.+.    ++    ..+.++||.+|.. 
T Consensus       159 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~-  236 (383)
T 3ulq_A          159 TYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFL-DLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNS-  236 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH-
Confidence            78999999998763         23568899999998 678999999999999854    33    3588999999964 


Q ss_pred             CCCCCCccCHHHHHHHHHHHHh--------CCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          144 SGGGKNEKDLRAGVALCARAAS--------IGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       144 ~g~~~~~~d~~~A~~~~~kAA~--------~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                      .|      ++++|..+|++|.+        .+.+.+.++||.+|..    ..+.++|..+|++|.+.
T Consensus       237 ~g------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~  293 (383)
T 3ulq_A          237 QS------QYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYK----LGKIDKAHEYHSKGMAY  293 (383)
T ss_dssp             TT------CHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             CC------CHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHH
Confidence            23      79999999999988        3457899999999875    45899999999999764

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=97.71  E-value=0.0031  Score=55.25  Aligned_cols=109  Identities=9%  Similarity=-0.074  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .++|+.+|+++.+.  .++.+.+.||.+|. ..++.++|+.+|+++.+.  .++.+.+.+|.+|.. .|      ++++|
T Consensus        59 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~g------~~~~A  130 (275)
T 1xnf_A           59 RALARNDFSQALAIRPDMPEVFNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GG------RDKLA  130 (275)
T ss_dssp             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH-TT------CHHHH
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHH-hc------cHHHH
Confidence            78999999999875  47999999999998 677999999999999985  478999999999965 33      78999


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          157 VALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       157 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                      +.+|+++.+.  .+......++..+..     .+.++|..+|+++...
T Consensus       131 ~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~~~~A~~~~~~~~~~  173 (275)
T 1xnf_A          131 QDDLLAFYQDDPNDPFRSLWLYLAEQK-----LDEKQAKEVLKQHFEK  173 (275)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHH-----HCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHh-----cCHHHHHHHHHHHHhc
Confidence            9999999874  456566666665554     3788999999887764

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.70  E-value=0.00029  Score=57.89  Aligned_cols=96  Identities=11%  Similarity=0.042  Sum_probs=77.5

Q ss_pred             HHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--------------------CCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           97 LEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--------------------SHAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        97 ~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--------------------G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      +.+...+|..++ ..+++.+|+.+|++|.+.                    .++.+.+++|.+|..       ..++.+|
T Consensus        11 a~~~~~~G~~~~-~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-------~~~~~~A   82 (162)
T 3rkv_A           11 VEALRQKGNELF-VQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLN-------IGDLHEA   82 (162)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHH-------HTCHHHH
T ss_pred             HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHh-------cCcHHHH
Confidence            456677788777 677889999999998875                    345789999999964       2378999


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCC
Q 018965          157 VALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREF  204 (348)
Q Consensus       157 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~  204 (348)
                      +.+|.+|.+.  .++.+.+.+|.+|..    ..++++|+.+|++|.+...
T Consensus        83 ~~~~~~al~~~p~~~~a~~~~g~~~~~----~g~~~~A~~~~~~al~l~p  128 (162)
T 3rkv_A           83 EETSSEVLKREETNEKALFRRAKARIA----AWKLDEAEEDLKLLLRNHP  128 (162)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCG
T ss_pred             HHHHHHHHhcCCcchHHHHHHHHHHHH----HhcHHHHHHHHHHHHhcCC
Confidence            9999999864  689999999998875    4589999999999987643

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=97.70  E-value=0.00042  Score=60.10  Aligned_cols=96  Identities=13%  Similarity=0.068  Sum_probs=80.9

Q ss_pred             CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHHH
Q 018965           96 NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVDA  171 (348)
Q Consensus        96 ~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A  171 (348)
                      ++.+.+.+|.+|. ..++.++|+.+|+++.+.  .++.+.+.+|.+|.. .|      ++++|+.+|+++.+.  .++.+
T Consensus       138 ~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~------~~~~A~~~~~~al~~~~~~~~~  209 (258)
T 3uq3_A          138 KAEEARLEGKEYF-TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK-LM------SFPEAIADCNKAIEKDPNFVRA  209 (258)
T ss_dssp             HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-hC------CHHHHHHHHHHHHHhCHHHHHH
Confidence            4678888998887 678999999999999875  468899999999964 23      789999999999864  67899


Q ss_pred             HHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965          172 VRELGHCLQDGYGVRQNIEKGRRLLIEANARE  203 (348)
Q Consensus       172 ~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G  203 (348)
                      .+.+|.+|..    ..+.++|..+|++|.+..
T Consensus       210 ~~~l~~~~~~----~g~~~~A~~~~~~a~~~~  237 (258)
T 3uq3_A          210 YIRKATAQIA----VKEYASALETLDAARTKD  237 (258)
T ss_dssp             HHHHHHHHHH----TTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH----HhhHHHHHHHHHHHHHhC
Confidence            9999999876    468999999999998654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=97.70  E-value=0.0007  Score=62.36  Aligned_cols=110  Identities=14%  Similarity=0.044  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHHHCC----CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHH
Q 018965           81 SDSAHRFLKRCVFAG----NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLR  154 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G----~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~  154 (348)
                      .++|+.+|+++.+..    ++.+.+.+|.+|. ..++.++|+.+|+++.+.  .++.+.+.+|.+|.. .|      ++.
T Consensus       197 ~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~g------~~~  268 (368)
T 1fch_A          197 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN-LSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN-GN------QSE  268 (368)
T ss_dssp             HHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHH
T ss_pred             HHHHHHHHHHHHHhCcCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-cC------CHH
Confidence            689999999988754    5789999999998 678999999999999875  478899999999964 33      789


Q ss_pred             HHHHHHHHHHh--CCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          155 AGVALCARAAS--IGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       155 ~A~~~~~kAA~--~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                      +|+.+|+++.+  ..++.+.+.||.+|..    ..++++|+.+|++|.+.
T Consensus       269 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~  314 (368)
T 1fch_A          269 EAVAAYRRALELQPGYIRSRYNLGISCIN----LGAHREAVEHFLEALNM  314 (368)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHh
Confidence            99999999986  4679999999999876    45899999999999763

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.68  E-value=0.0002  Score=52.13  Aligned_cols=77  Identities=22%  Similarity=0.319  Sum_probs=64.4

Q ss_pred             CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHHH
Q 018965           96 NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVDA  171 (348)
Q Consensus        96 ~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A  171 (348)
                      ++.+.+.+|.+|. ..++.++|+.+|+++.+.  .++.+.+.+|.+|.. .      .++++|+.+|+++.+.  +++.+
T Consensus         8 ~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~------~~~~~A~~~~~~a~~~~p~~~~~   79 (91)
T 1na3_A            8 SAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-Q------GDYDEAIEYYQKALELDPNNAEA   79 (91)
T ss_dssp             HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-T------TCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             cHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-H------hhHHHHHHHHHHHHhcCCCCHHH
Confidence            4678888998887 678999999999999875  578899999999864 2      3789999999999875  68899


Q ss_pred             HHHHHHHHh
Q 018965          172 VRELGHCLQ  180 (348)
Q Consensus       172 ~~~Lg~~y~  180 (348)
                      .+.||.+|.
T Consensus        80 ~~~l~~~~~   88 (91)
T 1na3_A           80 KQNLGNAKQ   88 (91)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998875

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=97.68  E-value=0.00014  Score=69.89  Aligned_cols=111  Identities=7%  Similarity=-0.038  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .++|+..|+++.+.  .++.+.+.+|.++....+|.++|+.+|++|.+..  ++.+.+++|.+|..- |      ++.+|
T Consensus       113 ~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~-g------~~~eA  185 (382)
T 2h6f_A          113 SERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWL-R------DPSQE  185 (382)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-T------CCTTH
T ss_pred             hHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc-c------CHHHH
Confidence            45666777766654  4666777777766633334677777777766543  566777777666431 2      44566


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          157 VALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       157 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                      +..|++|.+.  .+..+.+++|.+|..    ..+.++|+.+|++|.+.
T Consensus       186 l~~~~kal~ldP~~~~a~~~lg~~~~~----~g~~~eAl~~~~~al~l  229 (382)
T 2h6f_A          186 LEFIADILNQDAKNYHAWQHRQWVIQE----FKLWDNELQYVDQLLKE  229 (382)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCccCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHh
Confidence            6666666643  466666666666544    12445566666666554

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=97.67  E-value=0.00018  Score=74.19  Aligned_cols=118  Identities=13%  Similarity=-0.008  Sum_probs=97.8

Q ss_pred             cHHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHH
Q 018965           80 WSDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRA  155 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~  155 (348)
                      ..++|+..|+++.+.  .++++.+.+|.+|. ..+++++|+..|++|.+.  +++.+.++||.+|..- |      ++++
T Consensus       448 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~-g------~~~~  519 (681)
T 2pzi_A          448 DVAKATRKLDDLAERVGWRWRLVWYRAVAEL-LTGDYDSATKHFTEVLDTFPGELAPKLALAATAELA-G------NTDE  519 (681)
T ss_dssp             CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHH-T------CCCT
T ss_pred             CHHHHHHHHHHHhccCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-C------ChHH
Confidence            388999999998874  79999999999998 678999999999999875  5899999999999642 2      4456


Q ss_pred             HHHHHHHHHh--CCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCC--HHHHHh
Q 018965          156 GVALCARAAS--IGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREF--FQSVSK  210 (348)
Q Consensus       156 A~~~~~kAA~--~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~--~~A~~~  210 (348)
                       +.+|++|.+  -.++.+.++||.+|..    ..++++|+.+|++|.+..-  ..|..+
T Consensus       520 -~~~~~~al~~~P~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~P~~~~a~~~  573 (681)
T 2pzi_A          520 -HKFYQTVWSTNDGVISAAFGLARARSA----EGDRVGAVRTLDEVPPTSRHFTTARLT  573 (681)
T ss_dssp             -TCHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHTSCTTSTTHHHHHHH
T ss_pred             -HHHHHHHHHhCCchHHHHHHHHHHHHH----cCCHHHHHHHHHhhcccCcccHHHHHH
Confidence             788999876  4789999999999876    5589999999999987654  444443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=97.67  E-value=0.0027  Score=58.30  Aligned_cols=111  Identities=17%  Similarity=0.096  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC------------------------------
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS------------------------------  128 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G------------------------------  128 (348)
                      .++|+.+|+++.+.  .++.+.+.+|.+|. ..++.++|+.+|+++.+..                              
T Consensus       114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (368)
T 1fch_A          114 ELLAISALRRCLELKPDNQTALMALAVSFT-NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL  192 (368)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence            77888888888775  47888888888876 4556666666666655432                              


Q ss_pred             -----------------------CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccC
Q 018965          129 -----------------------HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVDAVRELGHCLQDGY  183 (348)
Q Consensus       129 -----------------------~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~  183 (348)
                                             ++.+.+.||.+|.. .|      ++++|+.+|+++.+.  .++.+.+.+|.+|..  
T Consensus       193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~-~g------~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~--  263 (368)
T 1fch_A          193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL-SG------EYDKAVDCFTAALSVRPNDYLLWNKLGATLAN--  263 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH--
T ss_pred             hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH--
Confidence                                   56788888888864 23      788999999998764  568889999988876  


Q ss_pred             CCCCCHHHHHHHHHHHHhcC
Q 018965          184 GVRQNIEKGRRLLIEANARE  203 (348)
Q Consensus       184 Gv~~d~~~A~~w~~~Aa~~G  203 (348)
                        ..++++|+.+|+++.+..
T Consensus       264 --~g~~~~A~~~~~~al~~~  281 (368)
T 1fch_A          264 --GNQSEEAVAAYRRALELQ  281 (368)
T ss_dssp             --TTCHHHHHHHHHHHHHHC
T ss_pred             --cCCHHHHHHHHHHHHHhC
Confidence              458899999999987653

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=97.67  E-value=0.0005  Score=52.76  Aligned_cols=96  Identities=18%  Similarity=0.118  Sum_probs=63.2

Q ss_pred             CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHHH
Q 018965           96 NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVDA  171 (348)
Q Consensus        96 ~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A  171 (348)
                      ++.+.+.+|..+. ..++.++|+.+|+++.+.  .++.+.+.+|.+|.. .      .++++|..+|+++.+.  .++.+
T Consensus        11 ~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~------~~~~~A~~~~~~~~~~~~~~~~~   82 (131)
T 2vyi_A           11 EAERLKTEGNEQM-KVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSK-L------GNYAGAVQDCERAICIDPAYSKA   82 (131)
T ss_dssp             HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-T------TCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hhHHHHHHHHHHH-HccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-h------hchHHHHHHHHHHHhcCccCHHH
Confidence            3455666666666 456777777777777654  356777777777753 2      2567777777777653  45677


Q ss_pred             HHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965          172 VRELGHCLQDGYGVRQNIEKGRRLLIEANARE  203 (348)
Q Consensus       172 ~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G  203 (348)
                      .+.+|.+|..    ..+.++|+.+|+++.+..
T Consensus        83 ~~~~~~~~~~----~~~~~~A~~~~~~~~~~~  110 (131)
T 2vyi_A           83 YGRMGLALSS----LNKHVEAVAYYKKALELD  110 (131)
T ss_dssp             HHHHHHHHHH----TTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHH----hCCHHHHHHHHHHHHhcC
Confidence            7777776654    346777777777776543

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=97.66  E-value=0.0011  Score=57.93  Aligned_cols=110  Identities=17%  Similarity=0.141  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHHC----------CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC----------CCHHHHHHHHHHH
Q 018965           81 SDSAHRFLKRCVFA----------GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK----------SHAPALYSLAVIQ  140 (348)
Q Consensus        81 ~~~A~~~~~kaA~~----------G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~----------G~~~A~~~Lg~~y  140 (348)
                      .++|..+|+++.+.          ..+.+.+.||.+|. ..++.++|+.+|++|.+.          ....+.++||.+|
T Consensus        59 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  137 (283)
T 3edt_B           59 YKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYG-KRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLC  137 (283)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence            67888888888765          23568899999988 678999999999999876          2467889999999


Q ss_pred             HccCCCCCCccCHHHHHHHHHHHHhC--------C--CHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          141 FNGSGGGKNEKDLRAGVALCARAASI--------G--HVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       141 ~~G~g~~~~~~d~~~A~~~~~kAA~~--------G--~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                      .. .|      ++++|..+|+++.+.        .  ...+.+.||.+|..    ..+.++|+.+|+++.+.
T Consensus       138 ~~-~g------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          138 QN-QG------KAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLK----QGKYQDAETLYKEILTR  198 (283)
T ss_dssp             HT-TT------CHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHH
T ss_pred             HH-cC------CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence            64 23      789999999999875        1  35688899998875    45899999999999863

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=97.66  E-value=0.00058  Score=51.93  Aligned_cols=92  Identities=23%  Similarity=0.344  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .++|..+|+++.+.  .++.+.+.+|.+|. ..++.++|+.+|+++.+.  .++.+.+.+|.+|.. .|      ++++|
T Consensus        25 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~------~~~~A   96 (125)
T 1na0_A           25 YDEAIEYYQKALELDPNNAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QG------DYDEA   96 (125)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHH
T ss_pred             HHHHHHHHHHHHHHCcCcHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hc------CHHHH
Confidence            78999999998875  57899999999988 568999999999999876  578899999999964 23      78999


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHh
Q 018965          157 VALCARAASI--GHVDAVRELGHCLQ  180 (348)
Q Consensus       157 ~~~~~kAA~~--G~~~A~~~Lg~~y~  180 (348)
                      ..+|+++.+.  .++.+...||.++.
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~l~~~~~  122 (125)
T 1na0_A           97 IEYYQKALELDPNNAEAKQNLGNAKQ  122 (125)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            9999999875  67899999998875

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=97.66  E-value=0.00065  Score=54.91  Aligned_cols=108  Identities=12%  Similarity=0.083  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .++|..+|+++.+.  .++.+.+.+|.+|. ..++.++|+.+|+++.+.  .++.+.+.+|.+|.. .|      ++.+|
T Consensus        29 ~~~A~~~~~~al~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~-~~------~~~~A  100 (166)
T 1a17_A           29 YENAIKFYSQAIELNPSNAIYYGNRSLAYL-RTECYGYALGDATRAIELDKKYIKGYYRRAASNMA-LG------KFRAA  100 (166)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHH
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-hc------cHHHH
Confidence            78899999998775  47899999999987 677899999999999875  478899999999864 23      78999


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHH--HhccCCCCCCHHHHHHHHHHHH
Q 018965          157 VALCARAASI--GHVDAVRELGHC--LQDGYGVRQNIEKGRRLLIEAN  200 (348)
Q Consensus       157 ~~~~~kAA~~--G~~~A~~~Lg~~--y~~G~Gv~~d~~~A~~w~~~Aa  200 (348)
                      +.+|+++.+.  .+..+...++..  +..    ..+.++|+.++.++.
T Consensus       101 ~~~~~~a~~~~p~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~  144 (166)
T 1a17_A          101 LRDYETVVKVKPHDKDAKMKYQECNKIVK----QKAFERAIAGDEHKR  144 (166)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHH----HHHHHHHHHcccchH
Confidence            9999999875  567777555544  442    357888888888765

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=97.65  E-value=0.0017  Score=60.60  Aligned_cols=112  Identities=20%  Similarity=0.141  Sum_probs=91.4

Q ss_pred             cHHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHH
Q 018965           80 WSDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRA  155 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~  155 (348)
                      ..++|+.+|+++.+.  .++++.+.||.+|. ..++.++|+.+|+++.+.  .++.+.+.||.+|.. .|      ++++
T Consensus       252 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g------~~~~  323 (388)
T 1w3b_A          252 LIDLAIDTYRRAIELQPHFPDAYCNLANALK-EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE-QG------NIEE  323 (388)
T ss_dssp             CHHHHHHHHHHHHHTCSSCHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TT------CHHH
T ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH-cC------CHHH
Confidence            378899999998875  47889999999887 567899999999998875  478889999988863 23      7899


Q ss_pred             HHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965          156 GVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE  203 (348)
Q Consensus       156 A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G  203 (348)
                      |+.+|+++.+.  .++.+.+.||.+|..    ..+.++|+.+|++|.+..
T Consensus       324 A~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~  369 (388)
T 1w3b_A          324 AVRLYRKALEVFPEFAAAHSNLASVLQQ----QGKLQEALMHYKEAIRIS  369 (388)
T ss_dssp             HHHHHHHHTTSCTTCHHHHHHHHHHHHT----TTCCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhC
Confidence            99999999875  578899999998875    457889999999987643

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=97.65  E-value=0.00056  Score=55.33  Aligned_cols=95  Identities=9%  Similarity=-0.042  Sum_probs=80.7

Q ss_pred             HHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHHHH
Q 018965           97 LEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVDAV  172 (348)
Q Consensus        97 ~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~  172 (348)
                      +.+.+.+|..++ ..++.++|+.+|+++.+.  .++.+.+.+|.+|.. .      .++.+|+.+|+++.+.  .++.+.
T Consensus        13 ~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~-~------~~~~~A~~~~~~a~~~~~~~~~~~   84 (166)
T 1a17_A           13 AEELKTQANDYF-KAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR-T------ECYGYALGDATRAIELDKKYIKGY   84 (166)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-T------TCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-c------CCHHHHHHHHHHHHHhCcccHHHH
Confidence            467788888887 678999999999999875  478999999999964 2      3789999999999875  678999


Q ss_pred             HHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965          173 RELGHCLQDGYGVRQNIEKGRRLLIEANARE  203 (348)
Q Consensus       173 ~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G  203 (348)
                      +.+|.+|..    ..+.++|+.+|+++.+..
T Consensus        85 ~~~a~~~~~----~~~~~~A~~~~~~a~~~~  111 (166)
T 1a17_A           85 YRRAASNMA----LGKFRAALRDYETVVKVK  111 (166)
T ss_dssp             HHHHHHHHH----TTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHH----hccHHHHHHHHHHHHHhC
Confidence            999998876    458999999999998764

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=97.63  E-value=0.00033  Score=61.76  Aligned_cols=111  Identities=8%  Similarity=0.021  Sum_probs=94.6

Q ss_pred             cHHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHccCCCCCCccC
Q 018965           80 WSDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS-----HAPALYSLAVIQFNGSGGGKNEKD  152 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G-----~~~A~~~Lg~~y~~G~g~~~~~~d  152 (348)
                      ..++|+.+|+++.+.  .++.+.+.+|.+|. ..+++++|+.+|+++.+.+     .+.+.+.+|.+|.. .|      +
T Consensus        18 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~-~~------~   89 (272)
T 3u4t_A           18 NYAEAIEVFNKLEAKKYNSPYIYNRRAVCYY-ELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK-KG------Q   89 (272)
T ss_dssp             CHHHHHHHHHHHHHTTCCCSTTHHHHHHHHH-HTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH-TT------C
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH-cc------c
Confidence            378999999999886  47889999999988 6789999999999999854     24568999999964 23      7


Q ss_pred             HHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          153 LRAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       153 ~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                      +++|+.+|+++.+.  .++.+.+.+|.+|..    ..+.++|+.+|+++.+.
T Consensus        90 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~  137 (272)
T 3u4t_A           90 DSLAIQQYQAAVDRDTTRLDMYGQIGSYFYN----KGNFPLAIQYMEKQIRP  137 (272)
T ss_dssp             HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH----TTCHHHHHHHHGGGCCS
T ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----ccCHHHHHHHHHHHhhc
Confidence            89999999999874  678999999999976    56999999999999875

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=97.63  E-value=0.00054  Score=53.10  Aligned_cols=92  Identities=9%  Similarity=0.010  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .++|+.+|+++.+.  .++.+.+.+|.+|. ..++.++|+.+|+++.+.  .++.+.+.+|.+|.. .      .++++|
T Consensus        32 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~------~~~~~A  103 (133)
T 2lni_A           32 YPQAMKHYTEAIKRNPKDAKLYSNRAACYT-KLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEA-M------KDYTKA  103 (133)
T ss_dssp             SHHHHHHHHHHHTTCTTCHHHHHHHHHHHT-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-T------TCHHHH
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-H------hhHHHH
Confidence            57899999999876  47999999999998 678999999999999875  478999999999964 2      378999


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHh
Q 018965          157 VALCARAASI--GHVDAVRELGHCLQ  180 (348)
Q Consensus       157 ~~~~~kAA~~--G~~~A~~~Lg~~y~  180 (348)
                      +.+|+++.+.  .+..+.+.|+.+|.
T Consensus       104 ~~~~~~~~~~~p~~~~~~~~l~~~~~  129 (133)
T 2lni_A          104 MDVYQKALDLDSSCKEAADGYQRCMM  129 (133)
T ss_dssp             HHHHHHHHHHCGGGTHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            9999999875  56788899998875

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=97.63  E-value=0.00019  Score=67.63  Aligned_cols=110  Identities=13%  Similarity=0.101  Sum_probs=90.8

Q ss_pred             cHHHHHHHHHHHHHC----C----CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHc
Q 018965           80 WSDSAHRFLKRCVFA----G----NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK---------SHAPALYSLAVIQFN  142 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~----G----~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~---------G~~~A~~~Lg~~y~~  142 (348)
                      ..++|+.+|++|.+.    +    .+.+.+.||.+|. ..++..+|+.+|++|.+.         +.+.+.++||.+|..
T Consensus       118 ~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~  196 (383)
T 3ulq_A          118 EYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYY-YMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLD  196 (383)
T ss_dssp             CHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHH
Confidence            389999999999875    4    3578999999998 678999999999999853         235688999999964


Q ss_pred             cCCCCCCccCHHHHHHHHHHHHhC----CCH----HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965          143 GSGGGKNEKDLRAGVALCARAASI----GHV----DAVRELGHCLQDGYGVRQNIEKGRRLLIEANA  201 (348)
Q Consensus       143 G~g~~~~~~d~~~A~~~~~kAA~~----G~~----~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~  201 (348)
                       .|      ++++|..+|++|.+.    ++.    .+.++||.+|..    ..++++|+.+|++|.+
T Consensus       197 -~g------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~----~g~~~~A~~~~~~al~  252 (383)
T 3ulq_A          197 -LK------QYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNS----QSQYEDAIPYFKRAIA  252 (383)
T ss_dssp             -TT------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             -hc------CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHH
Confidence             23      789999999999853    433    488999999976    5699999999999988

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=97.62  E-value=0.00015  Score=63.73  Aligned_cols=110  Identities=17%  Similarity=0.114  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHHHCC---CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHccCCCC
Q 018965           81 SDSAHRFLKRCVFAG---NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK----------SHAPALYSLAVIQFNGSGGG  147 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G---~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~----------G~~~A~~~Lg~~y~~G~g~~  147 (348)
                      .++|+..+++.....   .+.+.+.||.+|. ...+.++|+.+|+++.+.          ..+.+.+.||.+|.. .   
T Consensus        24 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~-~---   98 (283)
T 3edt_B           24 CKQALEDLEKTSGHDHPDVATMLNILALVYR-DQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK-R---   98 (283)
T ss_dssp             HHHHHHHHHHHHCSSSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHT-T---
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHH-h---
Confidence            556666666655434   4678999999998 678999999999999865          235688999999963 2   


Q ss_pred             CCccCHHHHHHHHHHHHhC----------CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          148 KNEKDLRAGVALCARAASI----------GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       148 ~~~~d~~~A~~~~~kAA~~----------G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                         .++++|+.+|++|.+.          ....+.++||.+|..    ..++++|+.+|+++.+.
T Consensus        99 ---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  156 (283)
T 3edt_B           99 ---GKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQN----QGKAEEVEYYYRRALEI  156 (283)
T ss_dssp             ---TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHH
T ss_pred             ---ccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence               3789999999999875          346788999999875    45899999999999876

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.60  E-value=0.001  Score=49.98  Aligned_cols=92  Identities=7%  Similarity=-0.148  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .++|..+|+++.+.  .++.+.+.+|.+|. ..++.++|+.+|+++.+..  ++.+.+.+|.+|.. .|      ++++|
T Consensus        20 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~------~~~~A   91 (118)
T 1elw_A           20 IDDALQCYSEAIKLDPHNHVLYSNRSAAYA-KKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF-LN------RFEEA   91 (118)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHH
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-hhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-Hh------hHHHH
Confidence            78999999998775  58999999999998 6789999999999998764  78999999999964 23      78999


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHh
Q 018965          157 VALCARAASI--GHVDAVRELGHCLQ  180 (348)
Q Consensus       157 ~~~~~kAA~~--G~~~A~~~Lg~~y~  180 (348)
                      ..+|+++.+.  .++.+...++.+..
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~l~~~~~  117 (118)
T 1elw_A           92 KRTYEEGLKHEANNPQLKEGLQNMEA  117 (118)
T ss_dssp             HHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence            9999999986  57888888887753

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=97.60  E-value=0.0012  Score=59.36  Aligned_cols=111  Identities=14%  Similarity=0.146  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .++|..+|+++.+.  .++.+.+.+|.+|. ..++.++|+.+|+++.+.  .++.+.+.+|.+|.. .|      ++++|
T Consensus       154 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~------~~~~A  225 (327)
T 3cv0_A          154 YRECRTLLHAALEMNPNDAQLHASLGVLYN-LSNNYDSAAANLRRAVELRPDDAQLWNKLGATLAN-GN------RPQEA  225 (327)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHH
T ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cC------CHHHH
Confidence            68999999998775  47899999999998 678999999999999865  468899999999975 33      78999


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965          157 VALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE  203 (348)
Q Consensus       157 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G  203 (348)
                      ..+|+++.+.  .++.+.+.||.+|..    ..+.++|+.+|+++.+..
T Consensus       226 ~~~~~~a~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~  270 (327)
T 3cv0_A          226 LDAYNRALDINPGYVRVMYNMAVSYSN----MSQYDLAAKQLVRAIYMQ  270 (327)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhC
Confidence            9999999875  578999999999876    568999999999997643

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=97.60  E-value=0.0011  Score=55.00  Aligned_cols=81  Identities=11%  Similarity=0.009  Sum_probs=71.1

Q ss_pred             cHHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHH
Q 018965           80 WSDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRA  155 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~  155 (348)
                      ..++|..+|+++.+.  .++.+.+.||.+|. ..+++++|+..|++|.+.  +++.+.++||.+|.. .|      ++++
T Consensus        51 ~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~-~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~-lg------~~~e  122 (151)
T 3gyz_A           51 RIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQ-IKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR-LK------APLK  122 (151)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH-TT------CHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cC------CHHH
Confidence            389999999999875  68999999999998 678999999999999875  589999999999974 34      7899


Q ss_pred             HHHHHHHHHhCCC
Q 018965          156 GVALCARAASIGH  168 (348)
Q Consensus       156 A~~~~~kAA~~G~  168 (348)
                      |...|++|.+...
T Consensus       123 A~~~~~~al~l~~  135 (151)
T 3gyz_A          123 AKECFELVIQHSN  135 (151)
T ss_dssp             HHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHhCC
Confidence            9999999988643

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=97.59  E-value=0.00046  Score=59.85  Aligned_cols=112  Identities=12%  Similarity=0.005  Sum_probs=92.2

Q ss_pred             cHHHHHHHHHHHHHCC--C-------HHHHHHhhhhhhhccCCHHHHHHHHHHHHh------------------------
Q 018965           80 WSDSAHRFLKRCVFAG--N-------LEACYTLGMIRFYCLQNRSSGTSLMAKAAM------------------------  126 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~G--~-------~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~------------------------  126 (348)
                      ..++|+.+|+++.+..  +       +.+.+.+|.+|. ..++.++|+.+|+++.+                        
T Consensus        53 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~  131 (258)
T 3uq3_A           53 EYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYH-KLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAE  131 (258)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHH
Confidence            3789999999988753  2       688999999988 67789999999999988                        


Q ss_pred             --C--CCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Q 018965          127 --K--SHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEAN  200 (348)
Q Consensus       127 --~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa  200 (348)
                        .  .++.+.+.+|.+|.. .|      ++++|+.+|+++.+.  .++.+.+.+|.+|..    ..+.++|+.+|+++.
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~-~~------~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al  200 (258)
T 3uq3_A          132 AYVNPEKAEEARLEGKEYFT-KS------DWPNAVKAYTEMIKRAPEDARGYSNRAAALAK----LMSFPEAIADCNKAI  200 (258)
T ss_dssp             HHCCHHHHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHH
T ss_pred             HHcCcchHHHHHHHHHHHHH-hc------CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----hCCHHHHHHHHHHHH
Confidence              3  245688899999864 23      789999999999874  578999999999875    458999999999998


Q ss_pred             hcC
Q 018965          201 ARE  203 (348)
Q Consensus       201 ~~G  203 (348)
                      +..
T Consensus       201 ~~~  203 (258)
T 3uq3_A          201 EKD  203 (258)
T ss_dssp             HHC
T ss_pred             HhC
Confidence            754

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=97.58  E-value=0.00084  Score=60.90  Aligned_cols=110  Identities=13%  Similarity=0.051  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHHC----CC----HHHHHHhhhhhhhccCCHHHHHHHHHHHHh----C-C----CHHHHHHHHHHHHcc
Q 018965           81 SDSAHRFLKRCVFA----GN----LEACYTLGMIRFYCLQNRSSGTSLMAKAAM----K-S----HAPALYSLAVIQFNG  143 (348)
Q Consensus        81 ~~~A~~~~~kaA~~----G~----~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~----~-G----~~~A~~~Lg~~y~~G  143 (348)
                      .++|+.+|+++.+.    ++    ..+.+.||.+|. ..+++++|+.+|++|.+    . +    .+.+.++||.+|.. 
T Consensus       131 ~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~-  208 (293)
T 3u3w_A          131 YEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA-ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL-  208 (293)
T ss_dssp             HHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH-
Confidence            79999999999873    33    347899999998 67799999999999984    1 2    24578999999964 


Q ss_pred             CCCCCCccCHHHHHHHHHHHHhC----C----CHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965          144 SGGGKNEKDLRAGVALCARAASI----G----HVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANA  201 (348)
Q Consensus       144 ~g~~~~~~d~~~A~~~~~kAA~~----G----~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~  201 (348)
                            ..++++|+++|++|-+.    +    -+.+.+++|.+|..   ..++.++|..+|++|..
T Consensus       209 ------~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~---~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          209 ------DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRK---LEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             ------TTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHH---TTCCHHHHHHHHHHHHH
T ss_pred             ------HhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH---hCCcHHHHHHHHHHHHH
Confidence                  23889999999998762    2    27899999999975   22357999999999964

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=97.55  E-value=0.00069  Score=64.94  Aligned_cols=115  Identities=7%  Similarity=-0.017  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .++|+.+|+++.+.  .++.+.+++|.+|. ..+++++|+..|++|.+.  .++.+.+++|.+|..- |      ++++|
T Consensus       148 ~~eAl~~~~~al~l~P~~~~a~~~~g~~~~-~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~-g------~~~eA  219 (382)
T 2h6f_A          148 LHEEMNYITAIIEEQPKNYQVWHHRRVLVE-WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEF-K------LWDNE  219 (382)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-T------CCTTH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHc-C------ChHHH
Confidence            78999999998885  58899999999988 456788899999999876  4889999999998642 2      45779


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHhccCCC-CCC-HHHHHHHHHHHHhcC
Q 018965          157 VALCARAASI--GHVDAVRELGHCLQDGYGV-RQN-IEKGRRLLIEANARE  203 (348)
Q Consensus       157 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv-~~d-~~~A~~w~~~Aa~~G  203 (348)
                      +.+|+++.+.  .+..+.+++|.+|..-.|. ... ...++.+|++|.+..
T Consensus       220 l~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~  270 (382)
T 2h6f_A          220 LQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV  270 (382)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC
Confidence            9999999875  6899999999998872222 211 233468888887644

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=97.53  E-value=0.00079  Score=61.20  Aligned_cols=95  Identities=17%  Similarity=0.139  Sum_probs=65.6

Q ss_pred             CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHHH
Q 018965           96 NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVDA  171 (348)
Q Consensus        96 ~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A  171 (348)
                      ++.+.+.+|..++ ..+++++|+.+|++|.+.  .++.+.+++|.+|.. .|      ++++|+.+|++|.+.  +++.+
T Consensus         3 ~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~------~~~~A~~~~~~al~~~p~~~~~   74 (281)
T 2c2l_A            3 SAQELKEQGNRLF-VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQ------QPEQALADCRRALELDGQSVKA   74 (281)
T ss_dssp             CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHTTSCTTCHHH
T ss_pred             hHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hc------CHHHHHHHHHHHHHhCCCCHHH
Confidence            4566777777776 566777777777777653  367777777777753 22      677777777777764  56777


Q ss_pred             HHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          172 VRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       172 ~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                      .+.+|.+|..    ..+.++|+.+|++|.+.
T Consensus        75 ~~~lg~~~~~----~g~~~~A~~~~~~al~l  101 (281)
T 2c2l_A           75 HFFLGQCQLE----MESYDEAIANLQRAYSL  101 (281)
T ss_dssp             HHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence            7777777764    34777777777777654

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.53  E-value=0.00074  Score=57.35  Aligned_cols=101  Identities=14%  Similarity=0.031  Sum_probs=76.8

Q ss_pred             HHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCH----------------HHHHHHHHHHHccCCCCCCccCHHHHHH
Q 018965           97 LEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHA----------------PALYSLAVIQFNGSGGGKNEKDLRAGVA  158 (348)
Q Consensus        97 ~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~----------------~A~~~Lg~~y~~G~g~~~~~~d~~~A~~  158 (348)
                      +.+.+.+|..++ ..+++.+|+.+|++|.+.  .++                .+.+++|.+|.. .|      ++.+|+.
T Consensus        38 ~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~~------~~~~A~~  109 (198)
T 2fbn_A           38 AFDIKEEGNEFF-KKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNK-NK------DYPKAID  109 (198)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHH-TT------CHHHHHH
T ss_pred             HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHH-hc------CHHHHHH
Confidence            455677787777 677889999999999874  233                788889988864 23      7889999


Q ss_pred             HHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc--CCHHHHH
Q 018965          159 LCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR--EFFQSVS  209 (348)
Q Consensus       159 ~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~--G~~~A~~  209 (348)
                      +|+++.+.  .++.+.+.+|.+|..    ..++++|+.+|++|.+.  .+..+..
T Consensus       110 ~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~  160 (198)
T 2fbn_A          110 HASKVLKIDKNNVKALYKLGVANMY----FGFLEEAKENLYKAASLNPNNLDIRN  160 (198)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHCCCcHHHHH
Confidence            99998764  578899999988865    45889999999998765  3445544

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=97.52  E-value=0.00089  Score=56.14  Aligned_cols=109  Identities=17%  Similarity=0.194  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHH----C----CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC----C-C----HHHHHHHHHHHHcc
Q 018965           81 SDSAHRFLKRCVF----A----GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK----S-H----APALYSLAVIQFNG  143 (348)
Q Consensus        81 ~~~A~~~~~kaA~----~----G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~----G-~----~~A~~~Lg~~y~~G  143 (348)
                      .++|..+|+++.+    .    ..+.+.+.+|.+|. ..+++++|+.+|++|.+.    | +    ..+.++||.+|.. 
T Consensus        42 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~-  119 (203)
T 3gw4_A           42 FDEARASFQALQQQAQKSGDHTAEHRALHQVGMVER-MAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALH-  119 (203)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHH-
Confidence            6788888888776    2    34568889999988 677999999999998875    3 3    4578899999864 


Q ss_pred             CCCCCCccCHHHHHHHHHHHHh----CCCHH----HHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965          144 SGGGKNEKDLRAGVALCARAAS----IGHVD----AVRELGHCLQDGYGVRQNIEKGRRLLIEANA  201 (348)
Q Consensus       144 ~g~~~~~~d~~~A~~~~~kAA~----~G~~~----A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~  201 (348)
                      .|      ++++|..+|+++.+    .++..    +...||.+|..    ..|.++|..+|++|.+
T Consensus       120 ~g------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~  175 (203)
T 3gw4_A          120 FG------DLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ----EKNLLEAQQHWLRARD  175 (203)
T ss_dssp             HT------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             hC------CHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH----CcCHHHHHHHHHHHHH
Confidence            23      78999999999874    45544    45888988875    4589999999998864

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=97.52  E-value=0.00048  Score=58.64  Aligned_cols=93  Identities=10%  Similarity=0.048  Sum_probs=79.4

Q ss_pred             HHHHHhhhhhhhccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHH
Q 018965           98 EACYTLGMIRFYCLQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVDAVREL  175 (348)
Q Consensus        98 ~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~~~L  175 (348)
                      ...|.+|..++ ..+++++|+..|+++.+. ++.+.+++|.+|.. .      .++.+|+.+|++|.+.  .++.+.+++
T Consensus         7 ~~~~~~g~~~~-~~~~~~~A~~~~~~a~~~-~~~~~~~lg~~~~~-~------g~~~~A~~~~~~al~~~~~~~~~~~~l   77 (213)
T 1hh8_A            7 ISLWNEGVLAA-DKKDWKGALDAFSAVQDP-HSRICFNIGCMYTI-L------KNMTEAEKAFTRSINRDKHLAVAYFQR   77 (213)
T ss_dssp             HHHHHHHHHHH-HTTCHHHHHHHHHTSSSC-CHHHHHHHHHHHHH-T------TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHH-HhCCHHHHHHHHHHHcCC-ChHHHHHHHHHHHH-c------CCHHHHHHHHHHHHHhCccchHHHHHH
Confidence            45678888887 678999999999999744 89999999999964 2      3789999999999874  689999999


Q ss_pred             HHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965          176 GHCLQDGYGVRQNIEKGRRLLIEANARE  203 (348)
Q Consensus       176 g~~y~~G~Gv~~d~~~A~~w~~~Aa~~G  203 (348)
                      |.+|..    ..+.++|+.+|++|.+..
T Consensus        78 g~~~~~----~~~~~~A~~~~~~al~~~  101 (213)
T 1hh8_A           78 GMLYYQ----TEKYDLAIKDLKEALIQL  101 (213)
T ss_dssp             HHHHHH----TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHH----cccHHHHHHHHHHHHHhC
Confidence            999986    568999999999998853

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=97.51  E-value=0.0012  Score=50.46  Aligned_cols=93  Identities=12%  Similarity=0.002  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .++|+.+|+++.+.  .++.+.+.+|.+|. ..++.++|+.+|+++.+.  .++.+.+.+|.+|.. .      .++.+|
T Consensus        28 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~A   99 (131)
T 2vyi_A           28 FEAAVHFYGKAIELNPANAVYFCNRAAAYS-KLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSS-L------NKHVEA   99 (131)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-T------TCHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH-h------CCHHHH
Confidence            78999999998765  57899999999998 678999999999999875  468899999999864 2      378999


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHhc
Q 018965          157 VALCARAASI--GHVDAVRELGHCLQD  181 (348)
Q Consensus       157 ~~~~~kAA~~--G~~~A~~~Lg~~y~~  181 (348)
                      ..+|+++.+.  .+..+.+.+|.++..
T Consensus       100 ~~~~~~~~~~~p~~~~~~~~l~~~~~~  126 (131)
T 2vyi_A          100 VAYYKKALELDPDNETYKSNLKIAELK  126 (131)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCccchHHHHHHHHHHHH
Confidence            9999999875  578899999988753

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=97.51  E-value=0.0016  Score=59.53  Aligned_cols=117  Identities=17%  Similarity=0.134  Sum_probs=89.3

Q ss_pred             cHHHHHHHHHHHHHCCCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH---ccCCCCCCccCHHHH
Q 018965           80 WSDSAHRFLKRCVFAGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKSHAPALYSLAVIQF---NGSGGGKNEKDLRAG  156 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G~~~A~~~Lg~~y~---~G~g~~~~~~d~~~A  156 (348)
                      ..++|+.+|++   .+++++.+.+|.+|. ..++.++|+.+|+++.+.......++|+..+.   .+.|      ++++|
T Consensus       116 ~~~~Al~~l~~---~~~~~~~~~l~~~~~-~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~------~~~eA  185 (291)
T 3mkr_A          116 NPDAALRTLHQ---GDSLECMAMTVQILL-KLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGE------KLQDA  185 (291)
T ss_dssp             CHHHHHHHHTT---CCSHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTT------HHHHH
T ss_pred             CHHHHHHHHhC---CCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCch------HHHHH
Confidence            38899999998   689999999999988 56789999999999987753333444443221   2333      78999


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc--CCHHHHHh
Q 018965          157 VALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR--EFFQSVSK  210 (348)
Q Consensus       157 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~--G~~~A~~~  210 (348)
                      +..|+++.+.  .++.+.+.+|.+|..    ..+.++|...|++|.+.  .++.+..+
T Consensus       186 ~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~eA~~~l~~al~~~p~~~~~l~~  239 (291)
T 3mkr_A          186 YYIFQEMADKCSPTLLLLNGQAACHMA----QGRWEAAEGVLQEALDKDSGHPETLIN  239 (291)
T ss_dssp             HHHHHHHHHHSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            9999999874  678899999998876    45899999999998775  35555554

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=97.50  E-value=0.00048  Score=61.57  Aligned_cols=77  Identities=12%  Similarity=0.036  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHC----------CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC------C----CHHHHHHHHHHH
Q 018965           81 SDSAHRFLKRCVFA----------GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK------S----HAPALYSLAVIQ  140 (348)
Q Consensus        81 ~~~A~~~~~kaA~~----------G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~------G----~~~A~~~Lg~~y  140 (348)
                      .++|..+|+++.+.          ....+.+.+|.+|. ..++.++|+.+|+++.+.      +    .+.+.+.||.+|
T Consensus       127 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~  205 (311)
T 3nf1_A          127 YKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQ-NQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCY  205 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            55666666666553          12345566666665 455666666666666554      1    233555666666


Q ss_pred             HccCCCCCCccCHHHHHHHHHHHHh
Q 018965          141 FNGSGGGKNEKDLRAGVALCARAAS  165 (348)
Q Consensus       141 ~~G~g~~~~~~d~~~A~~~~~kAA~  165 (348)
                      ..       ..++++|..+|+++.+
T Consensus       206 ~~-------~g~~~~A~~~~~~al~  223 (311)
T 3nf1_A          206 LK-------QGKFKQAETLYKEILT  223 (311)
T ss_dssp             HH-------HTCHHHHHHHHHHHHH
T ss_pred             HH-------cCCHHHHHHHHHHHHH
Confidence            42       1255666666666654

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=97.50  E-value=0.00063  Score=61.74  Aligned_cols=110  Identities=14%  Similarity=0.051  Sum_probs=83.9

Q ss_pred             cHHHHHHHHHHHHHC----CC----HHHHHHhhhhhhhccCCHHHHHHHHHHHHh---C--CC----HHHHHHHHHHHHc
Q 018965           80 WSDSAHRFLKRCVFA----GN----LEACYTLGMIRFYCLQNRSSGTSLMAKAAM---K--SH----APALYSLAVIQFN  142 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~----G~----~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~---~--G~----~~A~~~Lg~~y~~  142 (348)
                      ..++|+.+|+++.+.    .+    ..+.+.+|.+|. ..+++++|+.+|++|.+   .  ++    +.+.+++|.+|..
T Consensus       130 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~  208 (293)
T 2qfc_A          130 DYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA-ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL  208 (293)
T ss_dssp             CHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH
Confidence            378999999998753    22    568889999988 67889999999999972   1  22    2688999999863


Q ss_pred             cCCCCCCccCHHHHHHHHHHHHhC----C----CHHHHHHHHHHHhccCCCCCCHHHH-HHHHHHHHh
Q 018965          143 GSGGGKNEKDLRAGVALCARAASI----G----HVDAVRELGHCLQDGYGVRQNIEKG-RRLLIEANA  201 (348)
Q Consensus       143 G~g~~~~~~d~~~A~~~~~kAA~~----G----~~~A~~~Lg~~y~~G~Gv~~d~~~A-~~w~~~Aa~  201 (348)
                             ..++++|+.+|++|.+.    +    ...+.+++|.+|..    ..+.++| ..+|++|..
T Consensus       209 -------~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~----~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          209 -------DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRK----LEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             -------TTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHH
T ss_pred             -------HhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH----cCCcHHHHHHHHHHHHH
Confidence                   23789999999998753    1    16788999998875    3477888 788888753

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=97.49  E-value=0.00076  Score=52.65  Aligned_cols=92  Identities=10%  Similarity=-0.076  Sum_probs=75.0

Q ss_pred             cHHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHH
Q 018965           80 WSDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRA  155 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~  155 (348)
                      ..++|+.+|+++.+.  .++.+.+++|.+|. ..++.++|+.+|++|.+.  .++.+.+.+|.+|.. .|      ++++
T Consensus        19 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~~------~~~~   90 (126)
T 3upv_A           19 DWPNAVKAYTEMIKRAPEDARGYSNRAAALA-KLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA-VK------EYAS   90 (126)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHH
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-Hh------CHHH
Confidence            378999999999875  58999999999998 678999999999999876  478999999999964 33      7899


Q ss_pred             HHHHHHHHHhCC--------CHHHHHHHHHHH
Q 018965          156 GVALCARAASIG--------HVDAVRELGHCL  179 (348)
Q Consensus       156 A~~~~~kAA~~G--------~~~A~~~Lg~~y  179 (348)
                      |+.+|+++.+..        +..+...|+.+.
T Consensus        91 A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~  122 (126)
T 3upv_A           91 ALETLDAARTKDAEVNNGSSAREIDQLYYKAS  122 (126)
T ss_dssp             HHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence            999999997643        455555555443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.48  E-value=0.0014  Score=51.84  Aligned_cols=94  Identities=14%  Similarity=0.001  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHCCC-----HHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCH
Q 018965           81 SDSAHRFLKRCVFAGN-----LEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDL  153 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G~-----~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~  153 (348)
                      .++|+.+|+++.+...     +.+.+.+|.+|. ..+++++|+.+|+++.+.  .++.+.+.+|.+|..       ..++
T Consensus        44 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-------~~~~  115 (148)
T 2dba_A           44 YGGALAAYTQALGLDATPQDQAVLHRNRAACHL-KLEDYDKAETEASKAIEKDGGDVKALYRRSQALEK-------LGRL  115 (148)
T ss_dssp             HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH-------HTCH
T ss_pred             HHHHHHHHHHHHHHcccchHHHHHHHHHHHHHH-HHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHH-------cCCH
Confidence            7899999999988653     788999999988 678999999999999875  478999999999964       2378


Q ss_pred             HHHHHHHHHHHhC--CCHHHHHHHHHHHhcc
Q 018965          154 RAGVALCARAASI--GHVDAVRELGHCLQDG  182 (348)
Q Consensus       154 ~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G  182 (348)
                      ++|..+|+++.+.  .+..+...++.+....
T Consensus       116 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  146 (148)
T 2dba_A          116 DQAVLDLQRCVSLEPKNKVFQEALRNISGPS  146 (148)
T ss_dssp             HHHHHHHHHHHHHCSSCHHHHHHHHHHHCSC
T ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHhhc
Confidence            9999999999874  5788888888876543

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=97.47  E-value=0.00021  Score=59.85  Aligned_cols=112  Identities=8%  Similarity=-0.011  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHHH--CCCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHccCCCCCCccCHHHHH
Q 018965           81 SDSAHRFLKRCVF--AGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS-HAPALYSLAVIQFNGSGGGKNEKDLRAGV  157 (348)
Q Consensus        81 ~~~A~~~~~kaA~--~G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G-~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~  157 (348)
                      .++|...|+++.+  -+++.+.+.+|.+|. ..++.++|+..|+++.+.. ++.....++.+...+.+      +..+|+
T Consensus        22 ~~~A~~~~~~al~~~P~~~~a~~~la~~~~-~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~------~~~~a~   94 (176)
T 2r5s_A           22 HAQALNVIQTLSDELQSRGDVKLAKADCLL-ETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQA------AESPEL   94 (176)
T ss_dssp             HHHHHHHHHTSCHHHHTSHHHHHHHHHHHH-HTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHH------TSCHHH
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhc------ccchHH
Confidence            6788999988654  578999999999988 6778999999999987665 45555555555433222      112468


Q ss_pred             HHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965          158 ALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE  203 (348)
Q Consensus       158 ~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G  203 (348)
                      ..|+++.+.  +++.+.+.||.+|..    ..+.++|+.+|+++.+..
T Consensus        95 ~~~~~al~~~P~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~  138 (176)
T 2r5s_A           95 KRLEQELAANPDNFELACELAVQYNQ----VGRDEEALELLWNILKVN  138 (176)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHH----cccHHHHHHHHHHHHHhC
Confidence            889888764  679999999998875    458999999999998765

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=97.44  E-value=0.00057  Score=60.59  Aligned_cols=103  Identities=14%  Similarity=0.042  Sum_probs=85.2

Q ss_pred             HCCCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CC---HHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC-
Q 018965           93 FAGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SH---APALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI-  166 (348)
Q Consensus        93 ~~G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~---~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~-  166 (348)
                      +..++++.|.+|..++ ..+++++|+.+|+++.+.  ++   +.+.+.||.+|.. .      .++.+|+.+|+++.+. 
T Consensus        11 ~~~~~~~~~~~a~~~~-~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~-~------~~~~~A~~~~~~~l~~~   82 (261)
T 3qky_A           11 RHSSPQEAFERAMEFY-NQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQ-N------KEYLLAASEYERFIQIY   82 (261)
T ss_dssp             CCSSHHHHHHHHHHHH-HTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHH-T------TCHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH-h------CcHHHHHHHHHHHHHHC
Confidence            4578899999999998 678999999999999886  46   8899999999974 2      3899999999999985 


Q ss_pred             ----CCHHHHHHHHHHHhcc-C---CCCCCHHHHHHHHHHHHhcC
Q 018965          167 ----GHVDAVRELGHCLQDG-Y---GVRQNIEKGRRLLIEANARE  203 (348)
Q Consensus       167 ----G~~~A~~~Lg~~y~~G-~---Gv~~d~~~A~~w~~~Aa~~G  203 (348)
                          ..+.+.+.+|.+|..- .   --..+..+|+.+|+++.+..
T Consensus        83 p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~  127 (261)
T 3qky_A           83 QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY  127 (261)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred             CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC
Confidence                3378999999998751 1   11458899999999998753

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=97.44  E-value=0.00058  Score=64.24  Aligned_cols=110  Identities=12%  Similarity=0.040  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHHC----C-----CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcc
Q 018965           81 SDSAHRFLKRCVFA----G-----NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK----SH----APALYSLAVIQFNG  143 (348)
Q Consensus        81 ~~~A~~~~~kaA~~----G-----~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~----G~----~~A~~~Lg~~y~~G  143 (348)
                      .++|+.++++|.+.    +     .+.+.+.||.+|. ..+++++|+.+|++|.+.    |+    ..+.++||.+|.. 
T Consensus       157 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~-  234 (378)
T 3q15_A          157 THVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD-DFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDR-  234 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-
T ss_pred             cHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-
Confidence            78899999888763    2     2568889999998 678999999999999874    33    4688899999964 


Q ss_pred             CCCCCCccCHHHHHHHHHHHHh-----C--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          144 SGGGKNEKDLRAGVALCARAAS-----I--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       144 ~g~~~~~~d~~~A~~~~~kAA~-----~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                      .      .++++|..+|++|.+     .  ..+.+.+.||.+|..    ..+.++|..+|++|.+.
T Consensus       235 ~------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  290 (378)
T 3q15_A          235 S------GDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCK----AGQTQKAFQFIEEGLDH  290 (378)
T ss_dssp             H------TCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             C------CCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHH
Confidence            2      378999999999987     3  237889999999875    56899999999999874

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=97.43  E-value=0.0018  Score=49.55  Aligned_cols=94  Identities=18%  Similarity=0.241  Sum_probs=78.2

Q ss_pred             HHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHHHHH
Q 018965           98 EACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVDAVR  173 (348)
Q Consensus        98 ~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~~  173 (348)
                      ++.+.+|..|. ..++.++|+.+|+++.+.  .++.+.+.+|.+|..       ..++++|..+|+++.+.  .++.+.+
T Consensus         2 ~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-------~~~~~~A~~~~~~~~~~~~~~~~~~~   73 (136)
T 2fo7_A            2 EAWYNLGNAYY-KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK-------QGDYDEAIEYYQKALELDPRSAEAWY   73 (136)
T ss_dssp             HHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cHHHHHHHHHH-HcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHH-------hcCHHHHHHHHHHHHHHCCCchHHHH
Confidence            56788888887 567999999999999764  478899999999864       23789999999999764  5788899


Q ss_pred             HHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965          174 ELGHCLQDGYGVRQNIEKGRRLLIEANARE  203 (348)
Q Consensus       174 ~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G  203 (348)
                      .+|.+|..    ..+.++|..+|+++....
T Consensus        74 ~l~~~~~~----~~~~~~A~~~~~~~~~~~   99 (136)
T 2fo7_A           74 NLGNAYYK----QGDYDEAIEYYQKALELD   99 (136)
T ss_dssp             HHHHHHHT----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHH----hcCHHHHHHHHHHHHHhC
Confidence            99998875    458999999999998754

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=97.43  E-value=0.002  Score=60.27  Aligned_cols=110  Identities=15%  Similarity=0.047  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .++|...|+++.+.  .++.+.+.+|.+|. ..++..+|+.+|+++.+.  .++.+.+.+|.+|..-       .++++|
T Consensus       151 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-------~~~~~A  222 (388)
T 1w3b_A          151 LEEAKACYLKAIETQPNFAVAWSNLGCVFN-AQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEA-------RIFDRA  222 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT-------TCTTHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc-------CCHHHH
Confidence            56777777776653  45667777777766 456677777777776644  3566666677666431       244556


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          157 VALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       157 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                      +..|+++.+.  .++.+.+.||.+|..    ..+.++|+.+|+++.+.
T Consensus       223 ~~~~~~al~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~  266 (388)
T 1w3b_A          223 VAAYLRALSLSPNHAVVHGNLACVYYE----QGLIDLAIDTYRRAIEL  266 (388)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhCcCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhh
Confidence            6666665543  345566666665543    33566666666666554

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.42  E-value=0.00068  Score=53.86  Aligned_cols=109  Identities=16%  Similarity=0.106  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHHC----CCH----HHHHHhhhhhhhccCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHccC
Q 018965           81 SDSAHRFLKRCVFA----GNL----EACYTLGMIRFYCLQNRSSGTSLMAKAAMK----SH----APALYSLAVIQFNGS  144 (348)
Q Consensus        81 ~~~A~~~~~kaA~~----G~~----~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~----G~----~~A~~~Lg~~y~~G~  144 (348)
                      .++|+.+|+++.+.    +++    .+.+.+|.+|. ..++.++|+.+|++|.+.    ++    ..+.+++|.+|.. .
T Consensus        25 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~-~  102 (164)
T 3ro3_A           25 FRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYI-FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL-L  102 (164)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-T
T ss_pred             HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH-H
Confidence            67788888877654    443    47888999888 678999999999998764    33    4578899998864 2


Q ss_pred             CCCCCccCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965          145 GGGKNEKDLRAGVALCARAASI----GH----VDAVRELGHCLQDGYGVRQNIEKGRRLLIEANA  201 (348)
Q Consensus       145 g~~~~~~d~~~A~~~~~kAA~~----G~----~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~  201 (348)
                      |      ++++|..+|+++.+.    ++    ..+.+.||.+|..    ..+.++|..+|++|.+
T Consensus       103 ~------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A          103 Q------DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA----LGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             T------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHH
T ss_pred             h------hHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHH
Confidence            3      789999999998753    33    4578889988865    4589999999999864

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=97.42  E-value=0.00045  Score=65.03  Aligned_cols=110  Identities=7%  Similarity=0.019  Sum_probs=89.8

Q ss_pred             cHHHHHHHHHHHHHC----C----CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHc
Q 018965           80 WSDSAHRFLKRCVFA----G----NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK---------SHAPALYSLAVIQFN  142 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~----G----~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~---------G~~~A~~~Lg~~y~~  142 (348)
                      ..++|+.+|++|.+.    +    .+.+.+.||.+|. ..++..+|+.++++|.+.         +.+.+.++||.+|..
T Consensus       116 ~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~  194 (378)
T 3q15_A          116 EYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYY-HMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDD  194 (378)
T ss_dssp             CHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHH
Confidence            388999999999865    3    3678999999998 677999999999999853         235688899999964


Q ss_pred             cCCCCCCccCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965          143 GSGGGKNEKDLRAGVALCARAASI----GH----VDAVRELGHCLQDGYGVRQNIEKGRRLLIEANA  201 (348)
Q Consensus       143 G~g~~~~~~d~~~A~~~~~kAA~~----G~----~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~  201 (348)
                       .      .++++|.++|++|.+.    |+    ..+.++||.+|..    ..+.++|+.+|++|.+
T Consensus       195 -~------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~----~~~~~~A~~~~~~al~  250 (378)
T 3q15_A          195 -F------KHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDR----SGDDQMAVEHFQKAAK  250 (378)
T ss_dssp             -T------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHH
T ss_pred             -h------CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHH
Confidence             2      3789999999999763    44    4578899999875    4599999999999987

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.42  E-value=0.0008  Score=55.30  Aligned_cols=89  Identities=9%  Similarity=0.009  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .++|+.+|+++.+.  .++.+++.+|.+|+ ..+++++|+.+|++|.+.  .++.+.++||.+|.. .|      ++++|
T Consensus        27 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g------~~~~A   98 (164)
T 3sz7_A           27 YSKAIDLYTQALSIAPANPIYLSNRAAAYS-ASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD-MA------DYKGA   98 (164)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHH
T ss_pred             HHHHHHHHHHHHHhCCcCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cc------CHHHH
Confidence            78999999999875  58999999999998 678999999999999876  478999999999964 33      78999


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHH
Q 018965          157 VALCARAASI--GHVDAVRELGH  177 (348)
Q Consensus       157 ~~~~~kAA~~--G~~~A~~~Lg~  177 (348)
                      +.+|+++.+.  .+..+.+.++.
T Consensus        99 ~~~~~~al~~~p~~~~~~~~~~l  121 (164)
T 3sz7_A           99 KEAYEKGIEAEGNGGSDAMKRGL  121 (164)
T ss_dssp             HHHHHHHHHHHSSSCCHHHHHHH
T ss_pred             HHHHHHHHHhCCCchHHHHHHHH
Confidence            9999999764  44555555544

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=97.41  E-value=0.0046  Score=60.99  Aligned_cols=112  Identities=11%  Similarity=0.016  Sum_probs=92.6

Q ss_pred             cHHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC----C---C--HHHHHHHHHHHHccCCCCC
Q 018965           80 WSDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK----S---H--APALYSLAVIQFNGSGGGK  148 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~----G---~--~~A~~~Lg~~y~~G~g~~~  148 (348)
                      ..++|..+|+++.+.  .++.+.+.+|.+|. ..++.++|+++|+++.+.    +   +  ..+.+.||.+|.. .|   
T Consensus       456 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~-~g---  530 (597)
T 2xpi_A          456 NILLANEYLQSSYALFQYDPLLLNELGVVAF-NKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK-LK---  530 (597)
T ss_dssp             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH-TT---
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH-hc---
Confidence            378999999998774  57899999999988 677899999999999875    1   1  6788999998864 33   


Q ss_pred             CccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965          149 NEKDLRAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE  203 (348)
Q Consensus       149 ~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G  203 (348)
                         ++++|.++|+++.+.  .++.+.+.||.+|..    ..+.++|..+|+++.+..
T Consensus       531 ---~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~~  580 (597)
T 2xpi_A          531 ---MYDAAIDALNQGLLLSTNDANVHTAIALVYLH----KKIPGLAITHLHESLAIS  580 (597)
T ss_dssp             ---CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             ---CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcC
Confidence               789999999999875  478999999998876    458999999999998754

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=97.40  E-value=0.00078  Score=60.15  Aligned_cols=110  Identities=18%  Similarity=0.155  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHHHC----------CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC------C----CHHHHHHHHHHH
Q 018965           81 SDSAHRFLKRCVFA----------GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK------S----HAPALYSLAVIQ  140 (348)
Q Consensus        81 ~~~A~~~~~kaA~~----------G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~------G----~~~A~~~Lg~~y  140 (348)
                      .++|+.+|+++.+.          ..+.+.+.+|.+|. ...+.++|+.+|+++.+.      +    ...+.+.||.+|
T Consensus        43 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~  121 (311)
T 3nf1_A           43 YEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYR-DQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLY  121 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            67888888887763          23567889999987 677999999999999875      2    356888999998


Q ss_pred             HccCCCCCCccCHHHHHHHHHHHHhC----------CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          141 FNGSGGGKNEKDLRAGVALCARAASI----------GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       141 ~~G~g~~~~~~d~~~A~~~~~kAA~~----------G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                      .. .|      ++.+|..+|+++.+.          ....+.+.||.+|..    ..+.++|+.+|+++.+.
T Consensus       122 ~~-~g------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~  182 (311)
T 3nf1_A          122 GK-RG------KYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQN----QGKYEEVEYYYQRALEI  182 (311)
T ss_dssp             HT-TT------CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHH
T ss_pred             HH-cC------cHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence            63 23      789999999999874          235678889998875    46899999999999875

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=97.39  E-value=0.0032  Score=51.31  Aligned_cols=79  Identities=13%  Similarity=0.077  Sum_probs=68.7

Q ss_pred             cHHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHH
Q 018965           80 WSDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRA  155 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~  155 (348)
                      ..++|+..|+++.+.  .++.+.+.||.+|. ..+++++|+.+|++|.+.  .++.+.++||.+|.. .|      ++++
T Consensus        36 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~-~g------~~~~  107 (148)
T 2vgx_A           36 XYEDAHXVFQALCVLDHYDSRFFLGLGACRQ-AMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQ-XG------ELAE  107 (148)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH-TT------CHHH
T ss_pred             ChHHHHHHHHHHHHcCcccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH-cC------CHHH
Confidence            378999999998764  68999999999998 678999999999999875  589999999999964 34      7899


Q ss_pred             HHHHHHHHHhC
Q 018965          156 GVALCARAASI  166 (348)
Q Consensus       156 A~~~~~kAA~~  166 (348)
                      |..+|+++.+.
T Consensus       108 A~~~~~~al~~  118 (148)
T 2vgx_A          108 AESGLFLAQEL  118 (148)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999764

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.39  E-value=0.00093  Score=50.60  Aligned_cols=81  Identities=14%  Similarity=0.110  Sum_probs=61.6

Q ss_pred             CCCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHh----CC
Q 018965           94 AGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAAS----IG  167 (348)
Q Consensus        94 ~G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~----~G  167 (348)
                      -.++.+.+.||.+|+ ..+++++|+.+|+++.+..  ++.+.+.||.+|.. .|      ++++|+.+|++|.+    .+
T Consensus         4 p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g------~~~~A~~~~~~al~l~~~~~   75 (100)
T 3ma5_A            4 PEDPFTRYALAQEHL-KHDNASRALALFEELVETDPDYVGTYYHLGKLYER-LD------RTDDAIDTYAQGIEVAREEG   75 (100)
T ss_dssp             -CCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHHHHHS
T ss_pred             ccCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHhhhhcCC
Confidence            467888888998887 6678889999998888764  67888889988864 23      67888888888864    47


Q ss_pred             CHHHHHHHHHHHhcc
Q 018965          168 HVDAVRELGHCLQDG  182 (348)
Q Consensus       168 ~~~A~~~Lg~~y~~G  182 (348)
                      +..+...+..++...
T Consensus        76 ~~~~~~~l~~~l~~~   90 (100)
T 3ma5_A           76 TQKDLSELQDAKLKA   90 (100)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHc
Confidence            777777777766543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.39  E-value=0.0012  Score=50.64  Aligned_cols=92  Identities=12%  Similarity=0.109  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--C-------HHHHHHHHHHHHccCCCCCC
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--H-------APALYSLAVIQFNGSGGGKN  149 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~-------~~A~~~Lg~~y~~G~g~~~~  149 (348)
                      .++|..+|+++.+.  .++.+.+.+|.+|. ..++.++|+.+|+++.+..  +       +.+.+.+|.+|.. .|    
T Consensus        20 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~~----   93 (131)
T 1elr_A           20 FDTALKHYDKAKELDPTNMTYITNQAAVYF-EKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFK-EE----   93 (131)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH-TT----
T ss_pred             HHHHHHHHHHHHhcCCccHHHHHHHHHHHH-HhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHH-hc----
Confidence            78999999999876  57899999999998 6789999999999998764  3       7899999999974 23    


Q ss_pred             ccCHHHHHHHHHHHHhC-CCHHHHHHHHHHHh
Q 018965          150 EKDLRAGVALCARAASI-GHVDAVRELGHCLQ  180 (348)
Q Consensus       150 ~~d~~~A~~~~~kAA~~-G~~~A~~~Lg~~y~  180 (348)
                        ++.+|..+|+++.+. .++.....++.++.
T Consensus        94 --~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~  123 (131)
T 1elr_A           94 --KYKDAIHFYNKSLAEHRTPDVLKKCQQAEK  123 (131)
T ss_dssp             --CHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             --cHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence              789999999999875 46777888877654

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=97.39  E-value=0.00094  Score=62.44  Aligned_cols=115  Identities=10%  Similarity=0.033  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHH--CCCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--C---------------HHHHHHHHHHHHcc
Q 018965           83 SAHRFLKRCVF--AGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--H---------------APALYSLAVIQFNG  143 (348)
Q Consensus        83 ~A~~~~~kaA~--~G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~---------------~~A~~~Lg~~y~~G  143 (348)
                      +|+..|+++.+  ..++.+.+.+|..|+ ..+++++|+..|++|.+..  +               +.++++||.+|.. 
T Consensus       131 ~A~~~~~~a~~~~p~~a~~~~~~g~~~~-~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-  208 (336)
T 1p5q_A          131 KAKESWEMNSEEKLEQSTIVKERGTVYF-KEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLK-  208 (336)
T ss_dssp             CCCCGGGCCHHHHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             cccchhcCCHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            34444444332  345678888888887 5678888888888888654  3               5788888888864 


Q ss_pred             CCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC--CHHHHH
Q 018965          144 SGGGKNEKDLRAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE--FFQSVS  209 (348)
Q Consensus       144 ~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G--~~~A~~  209 (348)
                      .      .++.+|+.+|++|.+.  .++.+.+++|.+|..    ..++++|+.+|++|.+..  +..+..
T Consensus       209 ~------g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~P~~~~a~~  268 (336)
T 1p5q_A          209 L------QAFSAAIESCNKALELDSNNEKGLSRRGEAHLA----VNDFELARADFQKVLQLYPNNKAAKT  268 (336)
T ss_dssp             T------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred             c------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHCCCCHHHHH
Confidence            2      2678888888888764  578888888888765    458888888888887653  344443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=97.38  E-value=0.0024  Score=58.32  Aligned_cols=110  Identities=12%  Similarity=0.077  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHHC----CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFA----GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~----G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .++|++.|++..+.    +++.+.+.+|.+|. ..++.++|+.+|++   .+++++.+.+|.+|.. .|      +.++|
T Consensus        81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~-~~g~~~~Al~~l~~---~~~~~~~~~l~~~~~~-~g------~~~~A  149 (291)
T 3mkr_A           81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYF-YDQNPDAALRTLHQ---GDSLECMAMTVQILLK-LD------RLDLA  149 (291)
T ss_dssp             HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHH-HTTCHHHHHHHHTT---CCSHHHHHHHHHHHHH-TT------CHHHH
T ss_pred             HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHH-HCCCHHHHHHHHhC---CCCHHHHHHHHHHHHH-CC------CHHHH
Confidence            78999999998764    48999999999998 78899999999999   6899999999999864 33      68999


Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHhc-cCCCCCCHHHHHHHHHHHHhc
Q 018965          157 VALCARAASIGHVDAVRELGHCLQD-GYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       157 ~~~~~kAA~~G~~~A~~~Lg~~y~~-G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                      ..+|+++.+.........|+..+.. +.+ ..++++|+..|+++.+.
T Consensus       150 ~~~l~~~~~~~p~~~~~~l~~a~~~l~~~-~~~~~eA~~~~~~~l~~  195 (291)
T 3mkr_A          150 RKELKKMQDQDEDATLTQLATAWVSLAAG-GEKLQDAYYIFQEMADK  195 (291)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHC-TTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhCcCcHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHh
Confidence            9999999876543344444432211 111 25899999999999876

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.38  E-value=0.00031  Score=54.65  Aligned_cols=78  Identities=19%  Similarity=0.144  Sum_probs=36.7

Q ss_pred             CHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCC
Q 018965          113 NRSSGTSLMAKAAMKS-----HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVDAVRELGHCLQDGYGV  185 (348)
Q Consensus       113 d~~~A~~~~~~AA~~G-----~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv  185 (348)
                      +.++|+.+|++|.+.+     ++.+.++||.+|.. .|      ++++|+.+|+++.+.  .++.+.++||.+|..    
T Consensus         5 ~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~-~~------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----   73 (117)
T 3k9i_A            5 LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRT-LG------EYRKAEAVLANGVKQFPNHQALRVFYAMVLYN----   73 (117)
T ss_dssp             --CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----
T ss_pred             cHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH----
Confidence            3444555555555442     23455555555532 11      445555555555443  345555555555443    


Q ss_pred             CCCHHHHHHHHHHHHh
Q 018965          186 RQNIEKGRRLLIEANA  201 (348)
Q Consensus       186 ~~d~~~A~~w~~~Aa~  201 (348)
                      ..+.++|+.+|+++.+
T Consensus        74 ~g~~~~A~~~~~~al~   89 (117)
T 3k9i_A           74 LGRYEQGVELLLKIIA   89 (117)
T ss_dssp             HTCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            2345555555555543

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=97.37  E-value=0.0014  Score=61.24  Aligned_cols=107  Identities=18%  Similarity=0.112  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHHCC--C---------------HHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHH
Q 018965           81 SDSAHRFLKRCVFAG--N---------------LEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQF  141 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G--~---------------~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~  141 (348)
                      .++|+..|++|.+..  +               +.++++||.+|+ ..+++++|+.+|++|.+.  .++.+.+++|.+|.
T Consensus       163 ~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~  241 (336)
T 1p5q_A          163 YKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL-KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHL  241 (336)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            789999999998853  4               589999999998 678999999999999876  48999999999996


Q ss_pred             ccCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHH-HHHHHHH
Q 018965          142 NGSGGGKNEKDLRAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKG-RRLLIEA  199 (348)
Q Consensus       142 ~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A-~~w~~~A  199 (348)
                      . .|      ++++|+.+|++|.+.  .+..+.+.|+.+|..    ..+..+| ...|++.
T Consensus       242 ~-~g------~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~----~~~~~~a~~~~~~~~  291 (336)
T 1p5q_A          242 A-VN------DFELARADFQKVLQLYPNNKAAKTQLAVCQQR----IRRQLAREKKLYANM  291 (336)
T ss_dssp             H-TT------CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred             H-CC------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence            4 33      799999999999875  689999999999874    2345555 3344443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=97.35  E-value=0.0018  Score=58.71  Aligned_cols=78  Identities=14%  Similarity=0.024  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .++|+..|+++.+.  .++.+.+++|.+|. ..+++++|+.+|++|.+.  +++.+.+.+|.+|.. .|      ++++|
T Consensus        20 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g------~~~~A   91 (281)
T 2c2l_A           20 YPEAAACYGRAITRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE-ME------SYDEA   91 (281)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH-TT------CHHHH
T ss_pred             HHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC------CHHHH
Confidence            78999999999874  58999999999998 677999999999999886  578999999999974 33      78999


Q ss_pred             HHHHHHHHhC
Q 018965          157 VALCARAASI  166 (348)
Q Consensus       157 ~~~~~kAA~~  166 (348)
                      ..+|++|.+.
T Consensus        92 ~~~~~~al~l  101 (281)
T 2c2l_A           92 IANLQRAYSL  101 (281)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998764

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=97.34  E-value=0.0076  Score=59.40  Aligned_cols=111  Identities=11%  Similarity=0.011  Sum_probs=94.8

Q ss_pred             cHHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHH
Q 018965           80 WSDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRA  155 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~  155 (348)
                      ..++|..+|+++.+.  .++.+.+.||.+|. ..++.++|+++|+++.+.+  ++.+.+.||.+|.. .|      ++++
T Consensus       388 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g------~~~~  459 (597)
T 2xpi_A          388 KISEARRYFSKSSTMDPQFGPAWIGFAHSFA-IEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQ-LG------NILL  459 (597)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHH-HT------CHHH
T ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-cC------CHHH
Confidence            378999999998764  57899999999998 6789999999999998764  67899999999964 23      7899


Q ss_pred             HHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          156 GVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       156 A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                      |.++|+++.+.  .++.+.+.||.+|..    ..+.++|+.+|+++.+.
T Consensus       460 A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~  504 (597)
T 2xpi_A          460 ANEYLQSSYALFQYDPLLLNELGVVAFN----KSDMQTAINHFQNALLL  504 (597)
T ss_dssp             HHHHHHHHHHHCCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHH----hCCHHHHHHHHHHHHHh
Confidence            99999999764  678999999998875    45899999999999875

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.34  E-value=0.0011  Score=63.11  Aligned_cols=101  Identities=15%  Similarity=0.104  Sum_probs=82.3

Q ss_pred             HHHHHHhhhhhhhccCCHHHHHHHHHHHHh------------------CCCHHHHHHHHHHHHccCCCCCCccCHHHHHH
Q 018965           97 LEACYTLGMIRFYCLQNRSSGTSLMAKAAM------------------KSHAPALYSLAVIQFNGSGGGKNEKDLRAGVA  158 (348)
Q Consensus        97 ~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~------------------~G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~  158 (348)
                      +.+++.+|..++ ..+++++|+..|++|.+                  ..++.+.++||.+|.. .|      ++++|+.
T Consensus       223 a~~~~~~g~~~~-~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~g------~~~~A~~  294 (370)
T 1ihg_A          223 SEDLKNIGNTFF-KSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK-MS------DWQGAVD  294 (370)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHH-TT------CHHHHHH
T ss_pred             HHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHh-cc------CHHHHHH
Confidence            356788888887 67899999999999986                  2356789999999974 33      7899999


Q ss_pred             HHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC--CHHHHH
Q 018965          159 LCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE--FFQSVS  209 (348)
Q Consensus       159 ~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G--~~~A~~  209 (348)
                      +|++|.+.  .++.+.+.+|.+|..    ..++++|+.+|++|.+..  +..+..
T Consensus       295 ~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~eA~~~l~~Al~l~P~~~~~~~  345 (370)
T 1ihg_A          295 SCLEALEIDPSNTKALYRRAQGWQG----LKEYDQALADLKKAQEIAPEDKAIQA  345 (370)
T ss_dssp             HHHHHHTTCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHhCchhHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            99999986  589999999999876    468999999999998764  444443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.33  E-value=0.0019  Score=54.82  Aligned_cols=93  Identities=16%  Similarity=0.086  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHHHC--CCH----------------HHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNL----------------EACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQ  140 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~----------------~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y  140 (348)
                      .++|+.+|+++.+.  .++                .+.+++|.+|. ..+++++|+.+|+++.+.  .++.+.+.+|.+|
T Consensus        54 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  132 (198)
T 2fbn_A           54 INEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYN-KNKDYPKAIDHASKVLKIDKNNVKALYKLGVAN  132 (198)
T ss_dssp             HHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            78999999999985  344                89999999998 678999999999999875  4789999999999


Q ss_pred             HccCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhc
Q 018965          141 FNGSGGGKNEKDLRAGVALCARAASI--GHVDAVRELGHCLQD  181 (348)
Q Consensus       141 ~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~  181 (348)
                      ..       ..++++|+.+|+++.+.  .+..+...|+.++..
T Consensus       133 ~~-------~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  168 (198)
T 2fbn_A          133 MY-------FGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK  168 (198)
T ss_dssp             HH-------HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HH-------cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence            63       23789999999999865  688999999988753

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=97.32  E-value=0.0055  Score=58.03  Aligned_cols=111  Identities=11%  Similarity=0.024  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .++|+.+|+++.+.  .++.+.+.+|.+|. ..++.++|+.+|+++.+.+  ++.+.+.||.+|.. .|      ++++|
T Consensus        42 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g------~~~~A  113 (450)
T 2y4t_A           42 LADALSQFHAAVDGDPDNYIAYYRRATVFL-AMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLK-QG------KLDEA  113 (450)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHH
T ss_pred             HHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-cC------CHHHH
Confidence            78999999998874  68999999999998 6678999999999998864  78899999999974 33      78999


Q ss_pred             HHHHHHHHhCCC--H---HHHHHH------------HHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965          157 VALCARAASIGH--V---DAVREL------------GHCLQDGYGVRQNIEKGRRLLIEANARE  203 (348)
Q Consensus       157 ~~~~~kAA~~G~--~---~A~~~L------------g~~y~~G~Gv~~d~~~A~~w~~~Aa~~G  203 (348)
                      ..+|+++.+...  .   .+...|            |..|..    ..+.++|+.+|+++.+..
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~  173 (450)
T 2y4t_A          114 EDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFG----SGDYTAAIAFLDKILEVC  173 (450)
T ss_dssp             HHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Confidence            999999988653  3   444444            444543    457888888888887653

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.32  E-value=0.0024  Score=49.04  Aligned_cols=75  Identities=13%  Similarity=0.011  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHHHH
Q 018965           83 SAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAGVA  158 (348)
Q Consensus        83 ~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~  158 (348)
                      +++..|+++.+.  .++.+.+.||.+|. ..+++++|+.+|+++.+.  .++.+.+.||.+|.. .|      +..+|..
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g------~~~~A~~   74 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYA-EHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQG-QG------DRAGARQ   74 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HT------CHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-cC------CHHHHHH
Confidence            345566666553  46677777777766 456677777777777654  356677777777653 22      5667777


Q ss_pred             HHHHHHh
Q 018965          159 LCARAAS  165 (348)
Q Consensus       159 ~~~kAA~  165 (348)
                      +|+++.+
T Consensus        75 ~~~~al~   81 (115)
T 2kat_A           75 AWESGLA   81 (115)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7776654

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=97.30  E-value=0.0084  Score=54.24  Aligned_cols=111  Identities=14%  Similarity=0.038  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHHHC-----CCHHHHHHhh------------hhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHH
Q 018965           81 SDSAHRFLKRCVFA-----GNLEACYTLG------------MIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQF  141 (348)
Q Consensus        81 ~~~A~~~~~kaA~~-----G~~~A~~~Lg------------~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~  141 (348)
                      .++|+.+|+++.+.     .++.+.+.++            .++. ..++.++|+.+|+++.+..  ++.+.+.+|.+|.
T Consensus        87 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (359)
T 3ieg_A           87 LDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAF-DGADYTAAITFLDKILEVCVWDAELRELRAECFI  165 (359)
T ss_dssp             HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            56777777777665     3345555553            3333 4567777777777777653  5667777777765


Q ss_pred             ccCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965          142 NGSGGGKNEKDLRAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE  203 (348)
Q Consensus       142 ~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G  203 (348)
                      . .      .++++|..+|+++.+.  .++.+.+.+|.+|..    ..+.++|..+|+++.+..
T Consensus       166 ~-~------~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~  218 (359)
T 3ieg_A          166 K-E------GEPRKAISDLKAASKLKSDNTEAFYKISTLYYQ----LGDHELSLSEVRECLKLD  218 (359)
T ss_dssp             H-T------TCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHC
T ss_pred             H-C------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhC
Confidence            3 2      2567777777777664  467777777777654    346777777777776543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=97.30  E-value=0.0049  Score=58.34  Aligned_cols=81  Identities=11%  Similarity=0.010  Sum_probs=43.0

Q ss_pred             cCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCCC
Q 018965          111 LQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAAS--IGHVDAVRELGHCLQDGYGVR  186 (348)
Q Consensus       111 ~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~--~G~~~A~~~Lg~~y~~G~Gv~  186 (348)
                      .++.++|+.+|+++.+..  ++.+.+.+|.+|.. .|      ++++|+.+|+++.+  ..++.+.+.||.+|..    .
T Consensus       156 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~  224 (450)
T 2y4t_A          156 SGDYTAAIAFLDKILEVCVWDAELRELRAECFIK-EG------EPRKAISDLKAASKLKNDNTEAFYKISTLYYQ----L  224 (450)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHH----T
T ss_pred             cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-CC------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----c
Confidence            344444445554444432  44455555555532 11      44556666666554  2456666666666554    3


Q ss_pred             CCHHHHHHHHHHHHhc
Q 018965          187 QNIEKGRRLLIEANAR  202 (348)
Q Consensus       187 ~d~~~A~~w~~~Aa~~  202 (348)
                      .+.++|+.+|+++...
T Consensus       225 g~~~~A~~~~~~~~~~  240 (450)
T 2y4t_A          225 GDHELSLSEVRECLKL  240 (450)
T ss_dssp             TCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            4666666666666544

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.29  E-value=0.0013  Score=52.93  Aligned_cols=78  Identities=15%  Similarity=0.124  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .++|..+|+++.+.  .++.+.+.||.+|. ..+++++|+.+|++|.+.  .++.+.+.+|.+|.. .|      ++++|
T Consensus        34 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g------~~~~A  105 (142)
T 2xcb_A           34 WDDAQKIFQALCMLDHYDARYFLGLGACRQ-SLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ-LG------DLDGA  105 (142)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH-TT------CHHHH
T ss_pred             HHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-cC------CHHHH
Confidence            78999999998875  58999999999998 678999999999999876  588999999999974 34      78999


Q ss_pred             HHHHHHHHhC
Q 018965          157 VALCARAASI  166 (348)
Q Consensus       157 ~~~~~kAA~~  166 (348)
                      ..+|+++.+.
T Consensus       106 ~~~~~~al~~  115 (142)
T 2xcb_A          106 ESGFYSARAL  115 (142)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998764

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.29  E-value=0.0021  Score=50.92  Aligned_cols=87  Identities=16%  Similarity=0.125  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--C-------HHHHHHHHHHHHccCCCCCC
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--H-------APALYSLAVIQFNGSGGGKN  149 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~-------~~A~~~Lg~~y~~G~g~~~~  149 (348)
                      .++|+.+|++|.+.  .++.+.+++|.+|+ ..+++++|+.+|++|.+..  +       ..++++||.+|.. .     
T Consensus        24 ~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~-~-----   96 (127)
T 4gcn_A           24 FEKAHVHYDKAIELDPSNITFYNNKAAVYF-EEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQK-Q-----   96 (127)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-T-----
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHhHHHHHH-HhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHH-c-----
Confidence            78999999999885  68999999999998 6789999999999998753  1       3588899988853 3     


Q ss_pred             ccCHHHHHHHHHHHHhC-CCHHHHHHH
Q 018965          150 EKDLRAGVALCARAASI-GHVDAVREL  175 (348)
Q Consensus       150 ~~d~~~A~~~~~kAA~~-G~~~A~~~L  175 (348)
                       .++++|+++|++|.+. -+++..-.|
T Consensus        97 -~~~~~A~~~~~kal~~~~~~~~~~~l  122 (127)
T 4gcn_A           97 -NDLSLAVQWFHRSLSEFRDPELVKKV  122 (127)
T ss_dssp             -TCHHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred             -CCHHHHHHHHHHHHhhCcCHHHHHHH
Confidence             3899999999999753 455544443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=97.28  E-value=0.015  Score=51.98  Aligned_cols=80  Identities=18%  Similarity=0.109  Sum_probs=55.1

Q ss_pred             CHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCC
Q 018965          113 NRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQN  188 (348)
Q Consensus       113 d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d  188 (348)
                      +.++|+.+|+++.+.  .++.+.+.+|.+|.. .|      ++++|+.+|+++.+.  .++.+.+.+|.+|..    ..+
T Consensus       153 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~  221 (327)
T 3cv0_A          153 EYRECRTLLHAALEMNPNDAQLHASLGVLYNL-SN------NYDSAAANLRRAVELRPDDAQLWNKLGATLAN----GNR  221 (327)
T ss_dssp             HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTC
T ss_pred             cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-hc------cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCC
Confidence            344455555554433  256777888887753 23      678888888888754  567888888888875    457


Q ss_pred             HHHHHHHHHHHHhcC
Q 018965          189 IEKGRRLLIEANARE  203 (348)
Q Consensus       189 ~~~A~~w~~~Aa~~G  203 (348)
                      .++|+.+|+++.+..
T Consensus       222 ~~~A~~~~~~a~~~~  236 (327)
T 3cv0_A          222 PQEALDAYNRALDIN  236 (327)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcC
Confidence            888888888887654

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=97.27  E-value=0.0012  Score=60.64  Aligned_cols=107  Identities=12%  Similarity=0.072  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHHHC----CCH----HHHHHhhhhhhhccCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHccC
Q 018965           81 SDSAHRFLKRCVFA----GNL----EACYTLGMIRFYCLQNRSSGTSLMAKAAMK----SH----APALYSLAVIQFNGS  144 (348)
Q Consensus        81 ~~~A~~~~~kaA~~----G~~----~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~----G~----~~A~~~Lg~~y~~G~  144 (348)
                      .++|+.+|++|.+.    |++    .+..+||.+|. . .++++|+.+|++|.+.    |+    ..++++||.+|.. .
T Consensus        92 ~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~-~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~-~  168 (307)
T 2ifu_A           92 MPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLME-P-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVR-Q  168 (307)
T ss_dssp             GGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT-T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-T
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-c-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH-c
Confidence            56788888887654    554    57889999997 4 9999999999999864    33    5688899999964 3


Q ss_pred             CCCCCccCHHHHHHHHHHHHh----CCC----HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Q 018965          145 GGGKNEKDLRAGVALCARAAS----IGH----VDAVRELGHCLQDGYGVRQNIEKGRRLLIEAN  200 (348)
Q Consensus       145 g~~~~~~d~~~A~~~~~kAA~----~G~----~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa  200 (348)
                      |      ++.+|+.+|+++.+    .+.    ..+.+.+|.+|..    ..|+.+|+.+|+++.
T Consensus       169 g------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~----~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          169 Q------KFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLH----RADYVAAQKCVRESY  222 (307)
T ss_dssp             T------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHT
T ss_pred             C------CHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHh
Confidence            3      78999999999987    343    3467777887764    348999999999997

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.26  E-value=0.0017  Score=59.01  Aligned_cols=112  Identities=14%  Similarity=0.103  Sum_probs=87.9

Q ss_pred             cHHHHHHHHHHHHHC----CC----HHHHHHhhhhhhhcc-CCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHc
Q 018965           80 WSDSAHRFLKRCVFA----GN----LEACYTLGMIRFYCL-QNRSSGTSLMAKAAMK----SH----APALYSLAVIQFN  142 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~----G~----~~A~~~Lg~~y~~~~-~d~~~A~~~~~~AA~~----G~----~~A~~~Lg~~y~~  142 (348)
                      ..++|+.+|++|.+.    |+    +.++.+||.+|. .. +++++|+.+|++|.+.    |+    ..+..+||.+|..
T Consensus        92 ~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~-~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~  170 (292)
T 1qqe_A           92 NSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILE-NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL  170 (292)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence            378899999998764    55    458889999997 54 8999999999999864    33    4578899999864


Q ss_pred             cCCCCCCccCHHHHHHHHHHHHhCC--CH-------HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965          143 GSGGGKNEKDLRAGVALCARAASIG--HV-------DAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE  203 (348)
Q Consensus       143 G~g~~~~~~d~~~A~~~~~kAA~~G--~~-------~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G  203 (348)
                       .|      ++.+|+.+|+++.+..  +.       .+.+++|.+|..    ..|+.+|+..|++|.+..
T Consensus       171 -~g------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~  229 (292)
T 1qqe_A          171 -DG------QYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLA----ATDAVAAARTLQEGQSED  229 (292)
T ss_dssp             -TT------CHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHH----TTCHHHHHHHHHGGGCC-
T ss_pred             -hC------CHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhC
Confidence             33      7899999999999842  21       267889998875    458999999999997643

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=97.24  E-value=0.00054  Score=70.54  Aligned_cols=117  Identities=10%  Similarity=0.049  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHH--------H--CCCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCC
Q 018965           81 SDSAHRFLKRCV--------F--AGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGK  148 (348)
Q Consensus        81 ~~~A~~~~~kaA--------~--~G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~  148 (348)
                      .++|+..|+++.        +  -.++++.+.+|.+|. ..+++++|+..|+++.+.  +++.+.+++|.+|.. .|   
T Consensus       407 ~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g---  481 (681)
T 2pzi_A          407 PVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALL-DLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL-TG---  481 (681)
T ss_dssp             HHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HT---
T ss_pred             HHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHH-hcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH-cC---
Confidence            789999999988        3  467899999999998 678999999999999865  689999999999974 23   


Q ss_pred             CccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc--CCHHHHHh
Q 018965          149 NEKDLRAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR--EFFQSVSK  210 (348)
Q Consensus       149 ~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~--G~~~A~~~  210 (348)
                         ++++|+..|++|.+.  +++.+.++||.+|..    ..++++ +.+|++|.+.  .++.+..+
T Consensus       482 ---~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~----~g~~~~-~~~~~~al~~~P~~~~a~~~  539 (681)
T 2pzi_A          482 ---DYDSATKHFTEVLDTFPGELAPKLALAATAEL----AGNTDE-HKFYQTVWSTNDGVISAAFG  539 (681)
T ss_dssp             ---CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH----HTCCCT-TCHHHHHHHHCTTCHHHHHH
T ss_pred             ---CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCChHH-HHHHHHHHHhCCchHHHHHH
Confidence               789999999999865  789999999998875    234555 6777777654  34555544

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=97.24  E-value=0.01  Score=53.67  Aligned_cols=88  Identities=13%  Similarity=0.090  Sum_probs=72.0

Q ss_pred             cHHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHH
Q 018965           80 WSDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRA  155 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~  155 (348)
                      ..++|+.+|+++.+.  .++.+.+.+|.+|. ..++.++|+.+|+++.+.  .++.+.+.+|.+|.. .|      ++++
T Consensus       135 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~------~~~~  206 (359)
T 3ieg_A          135 DYTAAITFLDKILEVCVWDAELRELRAECFI-KEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQ-LG------DHEL  206 (359)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHH-HT------CHHH
T ss_pred             CHHHHHHHHHHHHHhCCCchHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC------CHHH
Confidence            378999999998775  58899999999998 678999999999999876  478999999999974 23      7899


Q ss_pred             HHHHHHHHHhC--CCHHHHHHH
Q 018965          156 GVALCARAASI--GHVDAVREL  175 (348)
Q Consensus       156 A~~~~~kAA~~--G~~~A~~~L  175 (348)
                      |+.+|+++.+.  .+..+...+
T Consensus       207 A~~~~~~a~~~~~~~~~~~~~~  228 (359)
T 3ieg_A          207 SLSEVRECLKLDQDHKRCFAHY  228 (359)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHhhCccchHHHHHH
Confidence            99999999864  344444333

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=97.24  E-value=0.0047  Score=56.80  Aligned_cols=112  Identities=13%  Similarity=-0.022  Sum_probs=91.0

Q ss_pred             cHHHHHHHHHHHHHCC--CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCCCH----HHHHHHHHHHHccCCCCCCccCH
Q 018965           80 WSDSAHRFLKRCVFAG--NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKSHA----PALYSLAVIQFNGSGGGKNEKDL  153 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~G--~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G~~----~A~~~Lg~~y~~G~g~~~~~~d~  153 (348)
                      -+++|.+.|......+  ++ ++|.+|.+++ ..++...|+..|+++....++    .+.|.||.++.. .|      ++
T Consensus       117 ~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~-~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~-LG------~~  187 (282)
T 4f3v_A          117 NYADAMEALEAAPVAGSEHL-VAWMKAVVYG-AAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAAN-LA------LF  187 (282)
T ss_dssp             CHHHHHHHHTSSCCTTCHHH-HHHHHHHHHH-HTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHH-TT------CH
T ss_pred             CHHHHHHHHHHHHhcCCchH-HHHHHHHHHH-HcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHH-CC------CH
Confidence            3889999998876544  35 9999999888 789999999999988766544    489999999853 44      78


Q ss_pred             HHHHHHHHHHHhCC-----CHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCC
Q 018965          154 RAGVALCARAASIG-----HVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREF  204 (348)
Q Consensus       154 ~~A~~~~~kAA~~G-----~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~  204 (348)
                      .+|+.||+++....     .+++++++|.++..    .-+.++|...|+++.....
T Consensus       188 ~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~----lGr~deA~~~l~~a~a~~P  239 (282)
T 4f3v_A          188 TEAERRLTEANDSPAGEACARAIAWYLAMARRS----QGNESAAVALLEWLQTTHP  239 (282)
T ss_dssp             HHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHhcCCCCccccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCC
Confidence            99999999998655     45799999998865    3388999999999987644

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=97.24  E-value=0.0014  Score=63.03  Aligned_cols=60  Identities=15%  Similarity=0.078  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQF  141 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~  141 (348)
                      .++|+.+|+++.+.  .++.+.+.+|.+|. ..++.++|+.+|+++.+.  .++.+.+.+|.+|.
T Consensus       320 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  383 (514)
T 2gw1_A          320 YDQAGKDFDKAKELDPENIFPYIQLACLAY-RENKFDDCETLFSEAKRKFPEAPEVPNFFAEILT  383 (514)
T ss_dssp             TTHHHHHHHHHHHTCSSCSHHHHHHHHHTT-TTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhChhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHH
Confidence            34555555555443  24445555555544 334455555555554433  23444445554443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.23  E-value=0.0014  Score=51.62  Aligned_cols=79  Identities=18%  Similarity=0.044  Sum_probs=68.4

Q ss_pred             cHHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHH
Q 018965           80 WSDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRA  155 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~  155 (348)
                      ..++|+..|+++.+.  .++++.+.||.++. ..++.++|+..|++|.+.  .++.+.+.||.+|..       ..+.++
T Consensus        32 ~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~-------~g~~~~  103 (121)
T 1hxi_A           32 NLAEAALAFEAVCQKEPEREEAWRSLGLTQA-ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN-------EHNANA  103 (121)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-------HHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------cCCHHH
Confidence            378999999999875  69999999999998 678999999999999986  489999999999964       237899


Q ss_pred             HHHHHHHHHhC
Q 018965          156 GVALCARAASI  166 (348)
Q Consensus       156 A~~~~~kAA~~  166 (348)
                      |+.+|+++.+.
T Consensus       104 A~~~~~~al~~  114 (121)
T 1hxi_A          104 ALASLRAWLLS  114 (121)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHHHHh
Confidence            99999998765

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.21  E-value=0.0023  Score=48.02  Aligned_cols=77  Identities=9%  Similarity=0.051  Sum_probs=61.3

Q ss_pred             CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CC---
Q 018965           96 NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GH---  168 (348)
Q Consensus        96 ~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~---  168 (348)
                      ++++.+.+|..++ ..+++++|+.+|++|.+.  .++.+.+++|.+|.. .|      ++++|+.+|+++.+.  .+   
T Consensus         3 ~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g------~~~~A~~~~~~al~~~p~~~~~   74 (111)
T 2l6j_A            3 QFEKQKEQGNSLF-KQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIK-LG------EYTQAIQMCQQGLRYTSTAEHV   74 (111)
T ss_dssp             HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHTSCSSTTSH
T ss_pred             hHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hc------CHHHHHHHHHHHHHhCCCccHH
Confidence            4677888998887 678999999999999875  478899999999864 23      789999999999876  34   


Q ss_pred             ---HHHHHHHHHHHh
Q 018965          169 ---VDAVRELGHCLQ  180 (348)
Q Consensus       169 ---~~A~~~Lg~~y~  180 (348)
                         ..+.+.+|.++.
T Consensus        75 ~~~~~~~~~~~~~~~   89 (111)
T 2l6j_A           75 AIRSKLQYRLELAQG   89 (111)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence               667777777664

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.20  E-value=0.0005  Score=53.39  Aligned_cols=84  Identities=17%  Similarity=0.221  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHHHCC-----CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCH
Q 018965           81 SDSAHRFLKRCVFAG-----NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDL  153 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G-----~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~  153 (348)
                      .++|+.+|+++.+.+     ++.+.+.||.+|. ..+++++|+.+|++|.+.  .++.+.+.||.+|.. .|      ++
T Consensus         6 ~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g------~~   77 (117)
T 3k9i_A            6 EAQAVPYYEKAIASGLQGKDLAECYLGLGSTFR-TLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYN-LG------RY   77 (117)
T ss_dssp             -CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HT------CH
T ss_pred             HHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-cC------CH
Confidence            457889999999875     4578999999998 678999999999999876  589999999999964 23      78


Q ss_pred             HHHHHHHHHHHhC--CCHHHH
Q 018965          154 RAGVALCARAASI--GHVDAV  172 (348)
Q Consensus       154 ~~A~~~~~kAA~~--G~~~A~  172 (348)
                      ++|+.+|+++.+.  .++...
T Consensus        78 ~~A~~~~~~al~~~p~~~~~~   98 (117)
T 3k9i_A           78 EQGVELLLKIIAETSDDETIQ   98 (117)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHH
Confidence            9999999999765  444443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=97.18  E-value=0.0047  Score=59.31  Aligned_cols=115  Identities=5%  Similarity=-0.114  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCCC-----------------------------
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKSH-----------------------------  129 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G~-----------------------------  129 (348)
                      .++|+.+|+++.+.  .++.+.+.+|.+|. ..++.++|+..|+++.+.+.                             
T Consensus        55 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  133 (514)
T 2gw1_A           55 LKKVVEMSTKALELKPDYSKVLLRRASANE-GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDI  133 (514)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC----
T ss_pred             HHHHHHHHHHHhccChHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77888888888765  57888899998887 56788889888888876653                             


Q ss_pred             ----------------------------------------------------HHHHHHHHHHHHccCCCCCCccCHHHHH
Q 018965          130 ----------------------------------------------------APALYSLAVIQFNGSGGGKNEKDLRAGV  157 (348)
Q Consensus       130 ----------------------------------------------------~~A~~~Lg~~y~~G~g~~~~~~d~~~A~  157 (348)
                                                                          +.+.+.+|.++..-.    ...++++|+
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~A~  209 (514)
T 2gw1_A          134 DTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKR----SPESYDKAD  209 (514)
T ss_dssp             -----------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSC----CTTHHHHHH
T ss_pred             HHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhh----hhccHHHHH
Confidence                                                                566677776665310    123788889


Q ss_pred             HHHHHHHh----------------CCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCC
Q 018965          158 ALCARAAS----------------IGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREF  204 (348)
Q Consensus       158 ~~~~kAA~----------------~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~  204 (348)
                      .+|+++.+                ..++.+.+.+|.+|..    ..+..+|+.+|+++.+...
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~l~~~~  268 (514)
T 2gw1_A          210 ESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFL----KNDPLGAHEDIKKAIELFP  268 (514)
T ss_dssp             HHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHH----SSCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCc
Confidence            99988887                3456788888888765    4578889999988877654

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=97.18  E-value=0.0019  Score=61.94  Aligned_cols=116  Identities=15%  Similarity=0.107  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhh--hccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRF--YCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLR  154 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~--~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~  154 (348)
                      +++|+.+|++|.+.  .++++.+.+|.++.  +...+..+|++.|++|.+.  .++.+.+.||..+..-..   ...+..
T Consensus       154 y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~---~~~~~~  230 (472)
T 4g1t_A          154 NERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMRE---EGEEEG  230 (472)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC---------C
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHh---hhhHHH
Confidence            78999999999875  68999999998865  4556677899999999865  478889999987754322   345788


Q ss_pred             HHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965          155 AGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE  203 (348)
Q Consensus       155 ~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G  203 (348)
                      +|..+|+++.+.  .++.+.++||.+|..    ..+..+|+..|++|.+..
T Consensus       231 ~a~~~~~~al~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~  277 (472)
T 4g1t_A          231 EGEKLVEEALEKAPGVTDVLRSAAKFYRR----KDEPDKAIELLKKALEYI  277 (472)
T ss_dssp             HHHHHHHHHHHHCSSCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhCccHHHHHHHHHHHHHH----cCchHHHHHHHHHHHHhC
Confidence            999999999764  689999999999986    568999999999998754

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=97.17  E-value=0.0032  Score=54.74  Aligned_cols=118  Identities=7%  Similarity=-0.064  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHHCC--C---HHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CH---HHHHHHHHHHHcc-------
Q 018965           81 SDSAHRFLKRCVFAG--N---LEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HA---PALYSLAVIQFNG-------  143 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G--~---~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~---~A~~~Lg~~y~~G-------  143 (348)
                      .++|+..|+++.+..  +   +++.+.+|.+|+ ..++.++|+..|+++.+..  ++   .|.|.+|.+|..-       
T Consensus        20 ~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~-~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~   98 (225)
T 2yhc_A           20 WRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY-KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQG   98 (225)
T ss_dssp             HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhh
Confidence            789999999998742  3   479999999998 6789999999999998753  33   4899999998641       


Q ss_pred             ---CCC-CCCccCHHHHHHHHHHHHhC--CCHHHH-----------------HHHHHHHhccCCCCCCHHHHHHHHHHHH
Q 018965          144 ---SGG-GKNEKDLRAGVALCARAASI--GHVDAV-----------------RELGHCLQDGYGVRQNIEKGRRLLIEAN  200 (348)
Q Consensus       144 ---~g~-~~~~~d~~~A~~~~~kAA~~--G~~~A~-----------------~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa  200 (348)
                         .+. .....+.++|+..|+++.+.  .++.+.                 +.+|.+|..    ..++.+|+..|+++.
T Consensus        99 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~l  174 (225)
T 2yhc_A           99 FFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTE----RGAWVAVVNRVEGML  174 (225)
T ss_dssp             ---------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHH
T ss_pred             hhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCcHHHHHHHHHHHH
Confidence               010 00134789999999999875  333222                 566777665    569999999999998


Q ss_pred             hcC
Q 018965          201 ARE  203 (348)
Q Consensus       201 ~~G  203 (348)
                      +.-
T Consensus       175 ~~~  177 (225)
T 2yhc_A          175 RDY  177 (225)
T ss_dssp             HHS
T ss_pred             HHC
Confidence            763

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=97.16  E-value=0.0057  Score=55.31  Aligned_cols=110  Identities=12%  Similarity=-0.017  Sum_probs=83.8

Q ss_pred             cHHHHHHHHHHHHHCC--CHH------HHHHhhhhhhhccCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHcc
Q 018965           80 WSDSAHRFLKRCVFAG--NLE------ACYTLGMIRFYCLQNRSSGTSLMAKAAMK----SH----APALYSLAVIQFNG  143 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~G--~~~------A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~----G~----~~A~~~Lg~~y~~G  143 (348)
                      ..++|...++++.+.-  +++      ..+.+|.+|. ...+.++|+.+|++|.+.    ++    ..+..+||.+|.. 
T Consensus        90 ~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~-  167 (293)
T 3u3w_A           90 RYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVL-KKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAE-  167 (293)
T ss_dssp             CHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHT-TSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHH-
T ss_pred             hHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHH-cccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH-
Confidence            3789999999987743  333      2224666665 566999999999999873    23    3478999999964 


Q ss_pred             CCCCCCccCHHHHHHHHHHHHh----C-C----CHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965          144 SGGGKNEKDLRAGVALCARAAS----I-G----HVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANA  201 (348)
Q Consensus       144 ~g~~~~~~d~~~A~~~~~kAA~----~-G----~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~  201 (348)
                      .|      ++++|+.+|++|.+    . +    ...+.++||.+|..    ..++++|+.++++|.+
T Consensus       168 ~g------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~----~~~y~~A~~~~~~al~  224 (293)
T 3u3w_A          168 NG------YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL----DSRYEESLYQVNKAIE  224 (293)
T ss_dssp             TT------CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             cC------CHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHH
Confidence            33      78999999999984    1 2    34578999999876    5699999999999975

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.15  E-value=0.00067  Score=57.02  Aligned_cols=51  Identities=14%  Similarity=0.233  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHhC--CCHHHHHHHHHHHhc-cCCCCC------CHHHHHHHHHHHHhcC
Q 018965          153 LRAGVALCARAASI--GHVDAVRELGHCLQD-GYGVRQ------NIEKGRRLLIEANARE  203 (348)
Q Consensus       153 ~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~-G~Gv~~------d~~~A~~w~~~Aa~~G  203 (348)
                      +++|+..|++|.+.  .+.+|.|+||..|.. |.-+|.      ++++|+.+|++|.+..
T Consensus        62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~  121 (158)
T 1zu2_A           62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ  121 (158)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence            45555566655543  355566666655542 222332      6777777777777654

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.15  E-value=0.0011  Score=55.59  Aligned_cols=84  Identities=6%  Similarity=-0.002  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhh--hcc-------CCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHc-cCCC
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRF--YCL-------QNRSSGTSLMAKAAMKS--HAPALYSLAVIQFN-GSGG  146 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~--~~~-------~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~-G~g~  146 (348)
                      .++|+..++++.+.  +++++.+++|.++.  +..       ...++|+..|++|.+..  +++|+|+||..|.. |.- 
T Consensus        18 feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l-   96 (158)
T 1zu2_A           18 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFL-   96 (158)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhccc-
Confidence            68899999998875  69999999999887  211       23679999999999876  89999999999964 322 


Q ss_pred             CCCcc------CHHHHHHHHHHHHhCC
Q 018965          147 GKNEK------DLRAGVALCARAASIG  167 (348)
Q Consensus       147 ~~~~~------d~~~A~~~~~kAA~~G  167 (348)
                        +|.      ++++|+.+|++|.+..
T Consensus        97 --~P~~~~a~g~~~eA~~~~~kAl~l~  121 (158)
T 1zu2_A           97 --TPDETEAKHNFDLATQFFQQAVDEQ  121 (158)
T ss_dssp             --CCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             --CcchhhhhccHHHHHHHHHHHHHhC
Confidence              222      7899999999998764

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=97.15  E-value=0.0059  Score=55.19  Aligned_cols=110  Identities=11%  Similarity=-0.024  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHHHCCC--H------HHHHHhhhhhhhccCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHccC
Q 018965           81 SDSAHRFLKRCVFAGN--L------EACYTLGMIRFYCLQNRSSGTSLMAKAAMK----SH----APALYSLAVIQFNGS  144 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G~--~------~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~----G~----~~A~~~Lg~~y~~G~  144 (348)
                      .++|+.+++++.+...  .      ...+.+|.+|. ...++++|+.+|++|.+.    .+    ..+.+++|.+|.. .
T Consensus        91 y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~-~  168 (293)
T 2qfc_A           91 YKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVL-KKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAE-N  168 (293)
T ss_dssp             HHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHH-TSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHH-T
T ss_pred             HHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-c
Confidence            7899999998877532  2      34556666665 556999999999999853    12    5689999999974 3


Q ss_pred             CCCCCccCHHHHHHHHHHHHh----C-CC----HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          145 GGGKNEKDLRAGVALCARAAS----I-GH----VDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       145 g~~~~~~d~~~A~~~~~kAA~----~-G~----~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                      |      ++++|+.+|++|.+    . ++    +.+.+++|.+|..    ..++++|+.+|++|.+.
T Consensus       169 ~------~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~----~~~y~~Al~~~~kal~~  225 (293)
T 2qfc_A          169 G------YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL----DSRYEESLYQVNKAIEI  225 (293)
T ss_dssp             T------CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             C------CHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH----HhhHHHHHHHHHHHHHH
Confidence            3      78999999999973    2 22    2689999999975    67999999999999764

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.14  E-value=0.0023  Score=62.47  Aligned_cols=109  Identities=11%  Similarity=0.054  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHH--CCCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CC---------------HHHHHHHHHHHHcc
Q 018965           83 SAHRFLKRCVF--AGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SH---------------APALYSLAVIQFNG  143 (348)
Q Consensus        83 ~A~~~~~kaA~--~G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~---------------~~A~~~Lg~~y~~G  143 (348)
                      +|..+|+++.+  ..++.+.+.+|..|+ ..+++.+|+.+|++|.+.  .+               ..++++||.+|.. 
T Consensus       252 ~A~~~~~~~~~~~~~~a~~~~~~G~~~~-~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-  329 (457)
T 1kt0_A          252 KAKESWEMDTKEKLEQAAIVKEKGTVYF-KGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLK-  329 (457)
T ss_dssp             CCCCGGGSCHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             cCcchhhcCHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            34444444332  245678888999988 678999999999999864  34               6899999999974 


Q ss_pred             CCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965          144 SGGGKNEKDLRAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE  203 (348)
Q Consensus       144 ~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G  203 (348)
                            ..++.+|+.+|.+|.+.  .++.+.+++|.+|..    ..++++|+.+|++|.+..
T Consensus       330 ------~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~----~g~~~~A~~~~~~al~l~  381 (457)
T 1kt0_A          330 ------LREYTKAVECCDKALGLDSANEKGLYRRGEAQLL----MNEFESAKGDFEKVLEVN  381 (457)
T ss_dssp             ------TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTC
T ss_pred             ------hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhC
Confidence                  23789999999999874  689999999998876    458999999999998764

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=97.13  E-value=0.0019  Score=60.55  Aligned_cols=110  Identities=14%  Similarity=0.099  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHHC----C----CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHccC
Q 018965           81 SDSAHRFLKRCVFA----G----NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK----SH----APALYSLAVIQFNGS  144 (348)
Q Consensus        81 ~~~A~~~~~kaA~~----G----~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~----G~----~~A~~~Lg~~y~~G~  144 (348)
                      .++|+.+|+++.+.    +    ...+.+.+|.+|. ..+++++|+.+|+++.+.    ++    ..+.+.||.+|.. .
T Consensus       199 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~  276 (411)
T 4a1s_A          199 LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYY-LLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIF-L  276 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT-T
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH-C
Confidence            57888888887653    2    3458889999988 678999999999999764    33    2388899999964 2


Q ss_pred             CCCCCccCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          145 GGGKNEKDLRAGVALCARAASI----GH----VDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       145 g~~~~~~d~~~A~~~~~kAA~~----G~----~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                            .++.+|..+|+++.+.    ++    ..+.+.||.+|..    ..+.++|+.+|++|.+.
T Consensus       277 ------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  332 (411)
T 4a1s_A          277 ------GQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTL----LHEFNTAIEYHNRHLAI  332 (411)
T ss_dssp             ------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             ------cCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence                  3789999999998764    33    6788999998875    45899999999998764

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.13  E-value=0.003  Score=46.96  Aligned_cols=81  Identities=9%  Similarity=-0.093  Sum_probs=67.9

Q ss_pred             cHHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC----CHHHHHHHHHHHHccCCCCCCccCH
Q 018965           80 WSDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS----HAPALYSLAVIQFNGSGGGKNEKDL  153 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G----~~~A~~~Lg~~y~~G~g~~~~~~d~  153 (348)
                      ..++|+.+|+++.+.  .++.+.+.+|.+|. ..++.++|+.+|+++.+..    ++.+.+.+|.+|.. .     +.+.
T Consensus        21 ~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~-~-----~~~~   93 (112)
T 2kck_A           21 NYTESIDLFEKAIQLDPEESKYWLMKGKALY-NLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRY-I-----EGKE   93 (112)
T ss_dssp             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTT-C-----SSCS
T ss_pred             hHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHH-H-----hCCH
Confidence            378999999998875  57899999999998 5678999999999999864    78999999999964 2     0377


Q ss_pred             HHHHHHHHHHHhCC
Q 018965          154 RAGVALCARAASIG  167 (348)
Q Consensus       154 ~~A~~~~~kAA~~G  167 (348)
                      ++|.++|+++.+..
T Consensus        94 ~~A~~~~~~~~~~~  107 (112)
T 2kck_A           94 VEAEIAEARAKLEH  107 (112)
T ss_dssp             HHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHHhhcc
Confidence            99999999987653

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=97.12  E-value=0.0018  Score=60.74  Aligned_cols=113  Identities=15%  Similarity=0.115  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHHC----CC----HHHHHHhhhhhhhccCCHHHHHHHHHHHHhCCC--------HHHHHHHHHHHHccC
Q 018965           81 SDSAHRFLKRCVFA----GN----LEACYTLGMIRFYCLQNRSSGTSLMAKAAMKSH--------APALYSLAVIQFNGS  144 (348)
Q Consensus        81 ~~~A~~~~~kaA~~----G~----~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G~--------~~A~~~Lg~~y~~G~  144 (348)
                      .++|..+|+++.+.    ++    ..+.+.+|.+|. ..++.++|+.+|+++.+...        ..+.+.||.+|.. .
T Consensus       239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~  316 (411)
T 4a1s_A          239 FQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHI-FLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTL-L  316 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-T
T ss_pred             hHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH-HCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-c
Confidence            78899999988764    34    238889999988 67899999999999876532        6788999999964 3


Q ss_pred             CCCCCccCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCH
Q 018965          145 GGGKNEKDLRAGVALCARAASI----GH----VDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFF  205 (348)
Q Consensus       145 g~~~~~~d~~~A~~~~~kAA~~----G~----~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~  205 (348)
                      |      ++++|..+|+++.+.    ++    ..+.+.||.+|..    ..|.++|..+|++|.+.-..
T Consensus       317 g------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~  375 (411)
T 4a1s_A          317 H------EFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSA----IGGHERALKYAEQHLQLAXX  375 (411)
T ss_dssp             T------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCCH
T ss_pred             C------CHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHHhh
Confidence            3      789999999998764    33    5588999998875    45899999999999876554

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=97.12  E-value=0.0016  Score=54.48  Aligned_cols=108  Identities=12%  Similarity=0.072  Sum_probs=81.9

Q ss_pred             HHHHHH---HHHHHHHCCCHHHHHHhhhhhhhccCCHHHHHHHHHHHHh------C--CCHHHHHHHHHHHHccCCCCCC
Q 018965           81 SDSAHR---FLKRCVFAGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAM------K--SHAPALYSLAVIQFNGSGGGKN  149 (348)
Q Consensus        81 ~~~A~~---~~~kaA~~G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~------~--G~~~A~~~Lg~~y~~G~g~~~~  149 (348)
                      .++|..   ++.. .....+.+.+.+|.+|. ..+++++|+.+|++|.+      .  ..+.+.++||.+|.. .|    
T Consensus         8 ~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-~g----   80 (203)
T 3gw4_A            8 YALAERQAQALLA-HPATASGARFMLGYVYA-FMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERM-AG----   80 (203)
T ss_dssp             HHHHHHHHHHHHT-STTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-TT----
T ss_pred             HHHHHHHHHHhcC-ChHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH-cC----
Confidence            556666   4422 11245788999999988 67899999999999987      2  245688899999864 33    


Q ss_pred             ccCHHHHHHHHHHHHhC----C-C----HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965          150 EKDLRAGVALCARAASI----G-H----VDAVRELGHCLQDGYGVRQNIEKGRRLLIEANA  201 (348)
Q Consensus       150 ~~d~~~A~~~~~kAA~~----G-~----~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~  201 (348)
                        ++++|..+|++|.+.    | +    ..+.++||.+|..    ..++++|+.+|++|.+
T Consensus        81 --~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~  135 (203)
T 3gw4_A           81 --NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALH----FGDLAGARQEYEKSLV  135 (203)
T ss_dssp             --CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHH
Confidence              789999999998764    4 3    4578899998875    3589999999999874

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=97.09  E-value=0.0051  Score=59.61  Aligned_cols=110  Identities=15%  Similarity=0.112  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHCC-CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHHH
Q 018965           81 SDSAHRFLKRCVFAG-NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAGV  157 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G-~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~  157 (348)
                      .++|..+|+++.+.. ++.+.+.+|.+|. ..++.++|+.+|+++.+.  .++.+.+.+|.+|.. .|      ++++|.
T Consensus       259 ~~~A~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~------~~~~A~  330 (537)
T 3fp2_A          259 LLDAQVLLQESINLHPTPNSYIFLALTLA-DKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFI-LQ------DYKNAK  330 (537)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHHHHHHHTC-CSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCchHHHHHHHHHH-HhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh-cC------CHHHHH
Confidence            455555555554432 2445555555554 344455555555555443  244555555555532 11      445555


Q ss_pred             HHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          158 ALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       158 ~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                      .+|+++.+.  .++.+.+.+|.+|..    ..+.++|+.+|+++.+.
T Consensus       331 ~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~  373 (537)
T 3fp2_A          331 EDFQKAQSLNPENVYPYIQLACLLYK----QGKFTESEAFFNETKLK  373 (537)
T ss_dssp             HHHHHHHHHCTTCSHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence            555555432  334455555554443    23445555555554433

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.07  E-value=0.0062  Score=47.01  Aligned_cols=88  Identities=18%  Similarity=0.202  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHC--CCH---HHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CC---HHHHHHHHHHHHccCCCCCCc
Q 018965           81 SDSAHRFLKRCVFA--GNL---EACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SH---APALYSLAVIQFNGSGGGKNE  150 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~---~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~---~~A~~~Lg~~y~~G~g~~~~~  150 (348)
                      .++|...|+++.+.  +++   .+.+.+|.+|. ..+++++|+.+|+++.+.  .+   +.+.+.+|.+|.. .|     
T Consensus        18 ~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~-~g-----   90 (129)
T 2xev_A           18 YDDASQLFLSFLELYPNGVYTPNALYWLGESYY-ATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG-EG-----   90 (129)
T ss_dssp             HHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH-TT-----
T ss_pred             HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH-cC-----
Confidence            78999999998874  456   79999999998 678999999999999875  45   8899999999974 34     


Q ss_pred             cCHHHHHHHHHHHHhC--CCHHHHHHHH
Q 018965          151 KDLRAGVALCARAASI--GHVDAVRELG  176 (348)
Q Consensus       151 ~d~~~A~~~~~kAA~~--G~~~A~~~Lg  176 (348)
                       ++++|..+|+++.+.  .++.+...+.
T Consensus        91 -~~~~A~~~~~~~~~~~p~~~~~~~a~~  117 (129)
T 2xev_A           91 -KNTEAQQTLQQVATQYPGSDAARVAQE  117 (129)
T ss_dssp             -CHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred             -CHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence             789999999999875  3444444333

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=97.05  E-value=0.0027  Score=52.81  Aligned_cols=110  Identities=8%  Similarity=-0.057  Sum_probs=81.8

Q ss_pred             cHHHHHHHHHHHHHCC-CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           80 WSDSAHRFLKRCVFAG-NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~G-~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      ..++|+..|+++.+.. ++.....++.+......+...|+..|+++.+.  +++.+.+.||.+|.. .|      ++++|
T Consensus        55 ~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~-~g------~~~~A  127 (176)
T 2r5s_A           55 QFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQ-VG------RDEEA  127 (176)
T ss_dssp             CHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TT------CHHHH
T ss_pred             CHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cc------cHHHH
Confidence            3789999999987655 56666555655431111223478999999876  589999999999964 33      78999


Q ss_pred             HHHHHHHHhCC----CHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Q 018965          157 VALCARAASIG----HVDAVRELGHCLQDGYGVRQNIEKGRRLLIEAN  200 (348)
Q Consensus       157 ~~~~~kAA~~G----~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa  200 (348)
                      ...|+++.+..    ++.+.+.||.+|..    ..+..+|...|+++.
T Consensus       128 ~~~~~~~l~~~p~~~~~~a~~~l~~~~~~----~g~~~~A~~~y~~al  171 (176)
T 2r5s_A          128 LELLWNILKVNLGAQDGEVKKTFMDILSA----LGQGNAIASKYRRQL  171 (176)
T ss_dssp             HHHHHHHHTTCTTTTTTHHHHHHHHHHHH----HCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcccChHHHHHHHHHHHHH----hCCCCcHHHHHHHHH
Confidence            99999999864    36699999998874    235678899998875

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.05  E-value=0.0036  Score=51.12  Aligned_cols=91  Identities=9%  Similarity=0.013  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHHC--------------------CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHH
Q 018965           81 SDSAHRFLKRCVFA--------------------GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAV  138 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--------------------G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~  138 (348)
                      .++|+..|++|.+.                    .++.+.+++|.+|+ ..+++.+|+.++++|.+.  .++.+.+.+|.
T Consensus        27 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~  105 (162)
T 3rkv_A           27 YKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYL-NIGDLHEAEETSSEVLKREETNEKALFRRAK  105 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence            67888888888765                    45579999999998 567999999999999875  58999999999


Q ss_pred             HHHccCCCCCCccCHHHHHHHHHHHHhCC--CH-HHHHHHHHHH
Q 018965          139 IQFNGSGGGKNEKDLRAGVALCARAASIG--HV-DAVRELGHCL  179 (348)
Q Consensus       139 ~y~~G~g~~~~~~d~~~A~~~~~kAA~~G--~~-~A~~~Lg~~y  179 (348)
                      +|.. .|      ++.+|+.+|++|.+..  ++ .....|+.+.
T Consensus       106 ~~~~-~g------~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~  142 (162)
T 3rkv_A          106 ARIA-AW------KLDEAEEDLKLLLRNHPAAASVVAREMKIVT  142 (162)
T ss_dssp             HHHH-TT------CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             HHHH-Hh------cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            9964 34      7899999999998763  44 3344555443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.00  E-value=0.003  Score=59.05  Aligned_cols=94  Identities=12%  Similarity=0.071  Sum_probs=77.4

Q ss_pred             HHHHHHhhhhhhhccCCHHHHHHHHHHHHhCCCH-------------------HHHHHHHHHHHccCCCCCCccCHHHHH
Q 018965           97 LEACYTLGMIRFYCLQNRSSGTSLMAKAAMKSHA-------------------PALYSLAVIQFNGSGGGKNEKDLRAGV  157 (348)
Q Consensus        97 ~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G~~-------------------~A~~~Lg~~y~~G~g~~~~~~d~~~A~  157 (348)
                      +.+.+.+|..++ ..+++.+|+.+|++|.+....                   .+.++||.+|.. .      .++.+|+
T Consensus       179 a~~~~~~g~~~~-~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~-~------g~~~~A~  250 (338)
T 2if4_A          179 ADRRKMDGNSLF-KEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIK-L------KRYDEAI  250 (338)
T ss_dssp             HHHHHHHHHHTC-SSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHT-T------TCCHHHH
T ss_pred             HHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHH-c------CCHHHHH
Confidence            456888898887 678899999999999876543                   378899999964 2      3679999


Q ss_pred             HHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          158 ALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       158 ~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                      .+|++|.+.  .++.+.+++|.+|..    ..++++|+.+|++|.+.
T Consensus       251 ~~~~~al~~~p~~~~a~~~lg~a~~~----~g~~~~A~~~l~~al~l  293 (338)
T 2if4_A          251 GHCNIVLTEEEKNPKALFRRGKAKAE----LGQMDSARDDFRKAQKY  293 (338)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHT----TTCHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence            999999874  689999999999986    56899999999999654

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=96.98  E-value=0.0018  Score=63.70  Aligned_cols=106  Identities=12%  Similarity=0.085  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .++|+.+|++|.+.  .++.+++++|.+|. ..+++++|+.+|++|.+.  .++.+.++||.+|.. .|      ++++|
T Consensus        22 ~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~-~g------~~~eA   93 (477)
T 1wao_1           22 YENAIKFYSQAIELNPSNAIYYGNRSLAYL-RTECYGYALGDATRAIELDKKYIKGYYRRAASNMA-LG------KFRAA   93 (477)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH-HT------CHHHH
T ss_pred             HHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC------CHHHH
Confidence            78999999998875  47889999999988 677899999999999876  478899999999864 23      78999


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHH--HhccCCCCCCHHHHHHHHHH
Q 018965          157 VALCARAASI--GHVDAVRELGHC--LQDGYGVRQNIEKGRRLLIE  198 (348)
Q Consensus       157 ~~~~~kAA~~--G~~~A~~~Lg~~--y~~G~Gv~~d~~~A~~w~~~  198 (348)
                      ..+|++|.+.  .+..+.+.++.+  +..    ..+.++|+..|++
T Consensus        94 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~----~g~~~~A~~~~~~  135 (477)
T 1wao_1           94 LRDYETVVKVKPHDKDAKMKYQECNKIVK----QKAFERAIAGDEH  135 (477)
T ss_dssp             HHHHHHHHHHSTTCTTHHHHHHHHHHHHH----HHHHCCC------
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHH----HHHHHHHhccccc
Confidence            9999999874  567788888877  443    2466667766664

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=96.96  E-value=0.0038  Score=59.36  Aligned_cols=92  Identities=16%  Similarity=0.083  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHHH------------------CCCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Q 018965           81 SDSAHRFLKRCVF------------------AGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQ  140 (348)
Q Consensus        81 ~~~A~~~~~kaA~------------------~G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y  140 (348)
                      .++|+..|++|.+                  ..++.+++++|.+|+ ..+++++|+.+|++|.+.  .++.+.+.+|.+|
T Consensus       239 ~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~  317 (370)
T 1ihg_A          239 WEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKL-KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGW  317 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence            6788888888876                  246788999999998 678999999999999986  4799999999999


Q ss_pred             HccCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHh
Q 018965          141 FNGSGGGKNEKDLRAGVALCARAASI--GHVDAVRELGHCLQ  180 (348)
Q Consensus       141 ~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~  180 (348)
                      .. .|      ++++|+.+|++|.+.  .+..+...|+.++.
T Consensus       318 ~~-~g------~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~  352 (370)
T 1ihg_A          318 QG-LK------EYDQALADLKKAQEIAPEDKAIQAELLKVKQ  352 (370)
T ss_dssp             HH-TT------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HH-cc------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            74 23      789999999999875  57888888888775

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=96.96  E-value=0.0035  Score=52.68  Aligned_cols=94  Identities=7%  Similarity=-0.085  Sum_probs=73.7

Q ss_pred             CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCCCH--------------HHHHHHHHHHHccCCCCCCccCHHHHHHHHH
Q 018965           96 NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKSHA--------------PALYSLAVIQFNGSGGGKNEKDLRAGVALCA  161 (348)
Q Consensus        96 ~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G~~--------------~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~  161 (348)
                      ..+..+.+|..++ ..+++++|+..|++|.+....              .+++++|.++.. .|      ++++|+..|.
T Consensus        10 ~a~~~~~~G~~l~-~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~-Lg------r~~eAl~~~~   81 (159)
T 2hr2_A           10 GAYLALSDAQRQL-VAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG-LR------SFDEALHSAD   81 (159)
T ss_dssp             HHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH-TT------CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHH-CC------CHHHHHHHHH
Confidence            3455677777776 567899999999999876422              288999988854 33      6888999999


Q ss_pred             HHHhC---------CCHHHH----HHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965          162 RAASI---------GHVDAV----RELGHCLQDGYGVRQNIEKGRRLLIEANA  201 (348)
Q Consensus       162 kAA~~---------G~~~A~----~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~  201 (348)
                      +|.+.         .++.|.    |++|..+..    -.++++|+..|++|.+
T Consensus        82 kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~----lgr~eEAl~~y~kAle  130 (159)
T 2hr2_A           82 KALHYFNRRGELNQDEGKLWISAVYSRALALDG----LGRGAEAMPEFKKVVE  130 (159)
T ss_dssp             HHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             HHHHhhhccccCCCchHHHHHHHHHhHHHHHHH----CCCHHHHHHHHHHHHh
Confidence            98865         677788    999998875    4589999999999975

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.95  E-value=0.0045  Score=47.45  Aligned_cols=73  Identities=21%  Similarity=0.324  Sum_probs=59.6

Q ss_pred             CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC
Q 018965           96 NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK---------SHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI  166 (348)
Q Consensus        96 ~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~---------G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~  166 (348)
                      +++-+|.||..++ ..+++..|+.||++|.+.         ..+...+.||.+|.. .|      ++++|+.++++|.+.
T Consensus         4 sa~dc~~lG~~~~-~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~-~g------~~~~A~~~~~~al~l   75 (104)
T 2v5f_A            4 TAEDCFELGKVAY-TEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ-QG------DLDKALLLTKKLLEL   75 (104)
T ss_dssp             CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH-HccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHH-cc------CHHHHHHHHHHHHhc
Confidence            4677899999988 788999999999999974         246778899999863 33      789999999999764


Q ss_pred             --CCHHHHHHHH
Q 018965          167 --GHVDAVRELG  176 (348)
Q Consensus       167 --G~~~A~~~Lg  176 (348)
                        .+..+..+++
T Consensus        76 ~P~~~~~~~n~~   87 (104)
T 2v5f_A           76 DPEHQRANGNLK   87 (104)
T ss_dssp             CTTCHHHHHHHH
T ss_pred             CCCCHHHHhhHH
Confidence              5788888877

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=96.94  E-value=0.005  Score=47.15  Aligned_cols=76  Identities=14%  Similarity=0.061  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHH
Q 018965          116 SGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEK  191 (348)
Q Consensus       116 ~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~  191 (348)
                      .++.+|+++.+.  .++.+.+.||.+|.. .|      ++++|+.+|+++.+.  .++.+.+.||.+|..    ..+.++
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~-~g------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~   71 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAE-HE------QFDAALPHLRAALDFDPTYSVAWKWLGKTLQG----QGDRAG   71 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cc------CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH----cCCHHH
Confidence            578889998775  479999999999964 23      789999999999875  678999999999876    458999


Q ss_pred             HHHHHHHHHhc
Q 018965          192 GRRLLIEANAR  202 (348)
Q Consensus       192 A~~w~~~Aa~~  202 (348)
                      |+.+|++|.+.
T Consensus        72 A~~~~~~al~~   82 (115)
T 2kat_A           72 ARQAWESGLAA   82 (115)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999999753

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=96.93  E-value=0.0016  Score=64.11  Aligned_cols=95  Identities=8%  Similarity=-0.046  Sum_probs=78.8

Q ss_pred             HHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHHHH
Q 018965           97 LEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVDAV  172 (348)
Q Consensus        97 ~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~  172 (348)
                      +++.+.+|..|+ ..+++++|+.+|++|.+..  ++.+.+++|.+|.. .      .++++|+.+|++|.+.  .++.+.
T Consensus         6 a~~~~~lg~~~~-~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~-~------g~~~~A~~~~~~al~l~p~~~~~~   77 (477)
T 1wao_1            6 AEELKTQANDYF-KAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR-T------ECYGYALGDATRAIELDKKYIKGY   77 (477)
T ss_dssp             HTTSSSSSSSTT-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-T------TCHHHHHHHHHHHHHSCTTCHHHH
T ss_pred             HHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-h------cCHHHHHHHHHHHHHhCCCCHHHH
Confidence            345677888887 6789999999999998764  68899999999964 2      3789999999999886  578999


Q ss_pred             HHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965          173 RELGHCLQDGYGVRQNIEKGRRLLIEANARE  203 (348)
Q Consensus       173 ~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G  203 (348)
                      ++||.+|..    ..+.++|+.+|++|.+..
T Consensus        78 ~~lg~~~~~----~g~~~eA~~~~~~al~~~  104 (477)
T 1wao_1           78 YRRAASNMA----LGKFRAALRDYETVVKVK  104 (477)
T ss_dssp             HHHHHHHHH----HTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHH----cCCHHHHHHHHHHHHHhC
Confidence            999998875    458999999999998763

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=96.92  E-value=0.0072  Score=47.18  Aligned_cols=78  Identities=14%  Similarity=0.024  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .++|+.+|+++.+.  .++.+.+.+|.+|. ..++.++|+.+|+++.+.  +++.+.+.||.+|.. .|      ++.+|
T Consensus        25 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~------~~~~A   96 (137)
T 3q49_B           25 YPEAAACYGRAITRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE-ME------SYDEA   96 (137)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHH
T ss_pred             HHHHHHHHHHHHhhCcCcHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH-Hh------hHHHH
Confidence            78999999998875  57899999999998 678999999999999875  478999999999974 23      78999


Q ss_pred             HHHHHHHHhC
Q 018965          157 VALCARAASI  166 (348)
Q Consensus       157 ~~~~~kAA~~  166 (348)
                      ..+|+++.+.
T Consensus        97 ~~~~~~a~~~  106 (137)
T 3q49_B           97 IANLQRAYSL  106 (137)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=96.91  E-value=0.015  Score=53.77  Aligned_cols=110  Identities=15%  Similarity=0.112  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHHC----CC----HHHHHHhhhhhhhccCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHccC
Q 018965           81 SDSAHRFLKRCVFA----GN----LEACYTLGMIRFYCLQNRSSGTSLMAKAAMK----SH----APALYSLAVIQFNGS  144 (348)
Q Consensus        81 ~~~A~~~~~kaA~~----G~----~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~----G~----~~A~~~Lg~~y~~G~  144 (348)
                      .++|..+|+++.+.    ++    ..+.+.+|.+|. ..++.++|+.+|+++.+.    ++    ..+.+.+|.+|.. .
T Consensus       203 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~  280 (406)
T 3sf4_A          203 FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI-FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL-L  280 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-T
T ss_pred             HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHH-h
Confidence            67888888887653    33    237888888887 567888999999888743    33    5677888888863 2


Q ss_pred             CCCCCccCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          145 GGGKNEKDLRAGVALCARAASI----GH----VDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       145 g~~~~~~d~~~A~~~~~kAA~~----G~----~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                      |      ++++|..+|++|.+.    ++    ..+.+.||.+|..    ..|+++|+.+|++|.+.
T Consensus       281 g------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  336 (406)
T 3sf4_A          281 Q------DYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTA----LGNHDQAMHFAEKHLEI  336 (406)
T ss_dssp             T------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHH
T ss_pred             C------cHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence            3      788999999888653    44    6678888888875    45889999999988654

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=96.89  E-value=0.0031  Score=58.92  Aligned_cols=110  Identities=9%  Similarity=0.027  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHCCCH-------------------HHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHH
Q 018965           81 SDSAHRFLKRCVFAGNL-------------------EACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVI  139 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G~~-------------------~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~  139 (348)
                      .++|+..|++|.+....                   .++++||.+|+ ..+++.+|+.+|++|.+.  .++.+++++|.+
T Consensus       195 ~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a  273 (338)
T 2if4_A          195 LEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLI-KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKA  273 (338)
T ss_dssp             CHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHH-TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            67889999998876543                   37889999988 677899999999999875  579999999999


Q ss_pred             HHccCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965          140 QFNGSGGGKNEKDLRAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANA  201 (348)
Q Consensus       140 y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~  201 (348)
                      |.. .|      ++++|..+|++|.+.  .+..+...|+.+...   .....+++..+|+++..
T Consensus       274 ~~~-~g------~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~---~~~~~~~a~~~~~~~l~  327 (338)
T 2if4_A          274 KAE-LG------QMDSARDDFRKAQKYAPDDKAIRRELRALAEQ---EKALYQKQKEMYKGIFK  327 (338)
T ss_dssp             HHT-TT------CHHHHHHHHHHTTC--------------------------------------
T ss_pred             HHH-cC------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhC
Confidence            964 33      799999999999754  678888888887543   23345566667766643

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=96.89  E-value=0.0059  Score=58.37  Aligned_cols=119  Identities=13%  Similarity=0.070  Sum_probs=86.8

Q ss_pred             cHHHHHHHHHHHHHC----------CCHHHHHHhhhhhh-hccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHc-cCC
Q 018965           80 WSDSAHRFLKRCVFA----------GNLEACYTLGMIRF-YCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFN-GSG  145 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~----------G~~~A~~~Lg~~y~-~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~-G~g  145 (348)
                      ..++|..+|+++.+.          ..++....+|..+. ...+++++|+.+|++|.+.  .++.+.+.+|.++.. +.-
T Consensus       109 ~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~  188 (472)
T 4g1t_A          109 RLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNW  188 (472)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHS
T ss_pred             ChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCc
Confidence            378999999988653          45778888887765 3457899999999999875  589999999987642 211


Q ss_pred             CCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965          146 GGKNEKDLRAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE  203 (348)
Q Consensus       146 ~~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G  203 (348)
                           .+..+|++.|++|.+.  .++.+...||..+..=.-...+..+|..+|++|....
T Consensus       189 -----~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~  243 (472)
T 4g1t_A          189 -----PPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA  243 (472)
T ss_dssp             -----CCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC
T ss_pred             -----hHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC
Confidence                 2446788999998764  6788999999877654444567889999999987654

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=96.88  E-value=0.0031  Score=57.28  Aligned_cols=111  Identities=10%  Similarity=0.019  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .++|...|+++.+.  +++++.+.||.+|. ..++.++|+.+|+++....  +......++..+... +      +...|
T Consensus       133 ~~~A~~~~~~al~~~P~~~~a~~~la~~~~-~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~-~------~~~~a  204 (287)
T 3qou_A          133 YTDALPLLXDAWQLSNQNGEIGLLLAETLI-ALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQ-A------ADTPE  204 (287)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHHHH-HTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHH-H------TSCHH
T ss_pred             HHHHHHHHHHHHHhCCcchhHHHHHHHHHH-HCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhh-c------ccCcc
Confidence            67777788776553  57788888888777 5667788888887775532  222333333333221 1      23457


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965          157 VALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE  203 (348)
Q Consensus       157 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G  203 (348)
                      +..|+++.+.  +++.+.++||.+|..    ..+.++|+..|+++....
T Consensus       205 ~~~l~~al~~~P~~~~~~~~la~~l~~----~g~~~~A~~~l~~~l~~~  249 (287)
T 3qou_A          205 IQQLQQQVAENPEDAALATQLALQLHQ----VGRNEEALELLFGHLRXD  249 (287)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhcCCccHHHHHHHHHHHHH----cccHHHHHHHHHHHHhcc
Confidence            7888888754  789999999999876    458999999999998753

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=96.87  E-value=0.0061  Score=59.45  Aligned_cols=93  Identities=15%  Similarity=0.100  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHHHC--CC---------------HHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHH
Q 018965           81 SDSAHRFLKRCVFA--GN---------------LEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQF  141 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~---------------~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~  141 (348)
                      +++|+..|++|.+.  .+               ..+++++|.+|+ ...++++|+.+|++|.+.  .++.|+|++|.+|.
T Consensus       284 ~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~  362 (457)
T 1kt0_A          284 YMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL-KLREYTKAVECCDKALGLDSANEKGLYRRGEAQL  362 (457)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence            78999999999874  44               689999999998 678999999999999885  58999999999997


Q ss_pred             ccCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhc
Q 018965          142 NGSGGGKNEKDLRAGVALCARAASI--GHVDAVRELGHCLQD  181 (348)
Q Consensus       142 ~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~  181 (348)
                      . .|      ++++|+.+|++|.+.  .+..+.+.|+.++..
T Consensus       363 ~-~g------~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~  397 (457)
T 1kt0_A          363 L-MN------EFESAKGDFEKVLEVNPQNKAARLQISMCQKK  397 (457)
T ss_dssp             H-TT------CHHHHHHHHHHHHTTC----CHHHHHHHHHHH
T ss_pred             H-cc------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            4 23      789999999999886  578899999998864

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=96.85  E-value=0.011  Score=57.33  Aligned_cols=111  Identities=17%  Similarity=0.193  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .++|+.+|+++.+.  .++.+.+.+|.+|. ..++.++|+.+|+++.+.  .++.+.+.+|.+|.. .|      ++++|
T Consensus       292 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~g------~~~~A  363 (537)
T 3fp2_A          292 SQEFFKFFQKAVDLNPEYPPTYYHRGQMYF-ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYK-QG------KFTES  363 (537)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHH-TT------CHHHH
T ss_pred             HHHHHHHHHHHhccCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC------CHHHH
Confidence            78999999998875  57999999999998 678999999999999876  467899999999964 23      78999


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965          157 VALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE  203 (348)
Q Consensus       157 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G  203 (348)
                      ..+|+++.+.  .++.+.+.+|.+|..    ..+.++|+.+|++|.+..
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~~  408 (537)
T 3fp2_A          364 EAFFNETKLKFPTLPEVPTFFAEILTD----RGDFDTAIKQYDIAKRLE  408 (537)
T ss_dssp             HHHHHHHHHHCTTCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHH----hCCHHHHHHHHHHHHHcC
Confidence            9999999875  678899999999876    469999999999998754

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=96.83  E-value=0.013  Score=52.23  Aligned_cols=91  Identities=14%  Similarity=0.123  Sum_probs=42.6

Q ss_pred             HHHHHhhhhhhhccCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHh----
Q 018965           98 EACYTLGMIRFYCLQNRSSGTSLMAKAAMK----SH----APALYSLAVIQFNGSGGGKNEKDLRAGVALCARAAS----  165 (348)
Q Consensus        98 ~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~----G~----~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~----  165 (348)
                      .+.+.+|.+|. ..++.++|+.+|+++.+.    ++    ..+.+.+|.+|.. .|      ++++|..+|+++.+    
T Consensus       184 ~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~-~g------~~~~A~~~~~~al~~~~~  255 (338)
T 3ro2_A          184 RAFGNLGNTHY-LLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF-LG------EFETASEYYKKTLLLARQ  255 (338)
T ss_dssp             HHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-HT------CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHHHHHh
Confidence            35555555555 344555555555554432    22    1244555555432 11      44555555555432    


Q ss_pred             CCC----HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Q 018965          166 IGH----VDAVRELGHCLQDGYGVRQNIEKGRRLLIEAN  200 (348)
Q Consensus       166 ~G~----~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa  200 (348)
                      .++    ..+.+.+|.+|..    ..+.++|..+|++|.
T Consensus       256 ~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~  290 (338)
T 3ro2_A          256 LKDRAVEAQSCYSLGNTYTL----LQDYEKAIDYHLKHL  290 (338)
T ss_dssp             TTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHH
T ss_pred             hcchhHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHH
Confidence            233    4555555555543    234555555555543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=96.81  E-value=0.013  Score=46.15  Aligned_cols=94  Identities=15%  Similarity=0.098  Sum_probs=73.9

Q ss_pred             HHHHHHhhhhhhhccCCHHHHHHHHHHHHhC----CCH----HHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--
Q 018965           97 LEACYTLGMIRFYCLQNRSSGTSLMAKAAMK----SHA----PALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--  166 (348)
Q Consensus        97 ~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~----G~~----~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--  166 (348)
                      ..+.+.+|.+|. ...++++|+.+|++|.+.    ++.    .+.+.+|.+|.. .|      ++++|..+|+++.+.  
T Consensus         9 ~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-~g------~~~~A~~~~~~a~~~~~   80 (164)
T 3ro3_A            9 GRAFGNLGNTHY-LLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIF-LG------EFETASEYYKKTLLLAR   80 (164)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHHHHH
Confidence            346788888887 677999999999998865    332    488899999864 23      789999999998763  


Q ss_pred             --CC----HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          167 --GH----VDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       167 --G~----~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                        ++    ..+.+++|.+|..    ..++++|..+|++|.+.
T Consensus        81 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~  118 (164)
T 3ro3_A           81 QLKDRAVEAQSCYSLGNTYTL----LQDYEKAIDYHLKHLAI  118 (164)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HhCCcHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHH
Confidence              43    5578889998875    56899999999998753

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=96.81  E-value=0.0045  Score=57.38  Aligned_cols=110  Identities=16%  Similarity=0.205  Sum_probs=85.9

Q ss_pred             cHHHHHHHHHHHHHCC--C----HHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHccCC
Q 018965           80 WSDSAHRFLKRCVFAG--N----LEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--------SHAPALYSLAVIQFNGSG  145 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~G--~----~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--------G~~~A~~~Lg~~y~~G~g  145 (348)
                      ..++|+.+|+++.+..  +    ..+++.+|.+|. ...++++|+.+|++|.+.        ..+.+.+.+|.+|.. .|
T Consensus        24 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~g  101 (406)
T 3sf4_A           24 DCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYF-YLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKV-LG  101 (406)
T ss_dssp             CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TT
T ss_pred             cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH-cC
Confidence            3789999999998864  4    367889999988 678999999999998654        235688899999864 33


Q ss_pred             CCCCccCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHhccCCCCCC--------------------HHHHHHHHH
Q 018965          146 GGKNEKDLRAGVALCARAASI----GH----VDAVRELGHCLQDGYGVRQN--------------------IEKGRRLLI  197 (348)
Q Consensus       146 ~~~~~~d~~~A~~~~~kAA~~----G~----~~A~~~Lg~~y~~G~Gv~~d--------------------~~~A~~w~~  197 (348)
                            ++.+|+.+|++|.+.    ++    ..+.+.||.+|..    ..+                    +++|+.+|+
T Consensus       102 ------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~  171 (406)
T 3sf4_A          102 ------NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA----KGKSFGCPGPQDVGEFPEEVRDALQAAVDFYE  171 (406)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HHHTCC-------CCCCHHHHHHHHHHHHHHH
T ss_pred             ------CHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH----cCCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence                  789999999998764    44    5588899998864    224                    888888888


Q ss_pred             HHHh
Q 018965          198 EANA  201 (348)
Q Consensus       198 ~Aa~  201 (348)
                      +|.+
T Consensus       172 ~al~  175 (406)
T 3sf4_A          172 ENLS  175 (406)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=96.75  E-value=0.00075  Score=45.57  Aligned_cols=47  Identities=28%  Similarity=0.403  Sum_probs=36.3

Q ss_pred             CCCCCCCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHhHHHHhccCCchhhc
Q 018965           15 EKPDLFDALPDDLLECVLSKLISSAPSPSDFINVLLTCKRLNRVGLRPTVLS   66 (348)
Q Consensus        15 ~~~~~~~~l~~d~l~~il~~~a~~~~s~~d~~~~~l~~k~~~~~~~~~~~l~   66 (348)
                      +++..+..||+|++..||..+     ++.|+..+..+||.|+.+..++..+.
T Consensus         4 ~~~~~~~~LP~eil~~I~~~L-----~~~dl~~~~~Vck~w~~~~~~~~lW~   50 (53)
T 1fs1_A            4 FPGVSWDSLPDELLLGIFSCL-----CLPELLKVSGVCKRWYRLASDESLWQ   50 (53)
T ss_dssp             -----CCSSCHHHHHHHHTTS-----CGGGHHHHHTTCHHHHHHHTCGGGC-
T ss_pred             CCCCCHHHCCHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHhCChHHHH
Confidence            356689999999999999987     45799999999999999988766554

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=96.74  E-value=0.0099  Score=52.92  Aligned_cols=113  Identities=19%  Similarity=0.231  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHHC--CC----HHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHccCCC
Q 018965           81 SDSAHRFLKRCVFA--GN----LEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--------SHAPALYSLAVIQFNGSGG  146 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~----~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--------G~~~A~~~Lg~~y~~G~g~  146 (348)
                      .++|+.+|+++.+.  ++    ..+.+.+|.+|. ...++++|+.+|+++.+.        ..+.+.+.+|.+|.. .| 
T Consensus        21 ~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-~g-   97 (338)
T 3ro2_A           21 CRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYF-YLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKV-LG-   97 (338)
T ss_dssp             HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-TT-
T ss_pred             HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH-cc-
Confidence            78999999998875  34    367889999988 677999999999998654        235688899999864 33 


Q ss_pred             CCCccCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHhc-cCC---------------CCCCHHHHHHHHHHHHh
Q 018965          147 GKNEKDLRAGVALCARAASI----GH----VDAVRELGHCLQD-GYG---------------VRQNIEKGRRLLIEANA  201 (348)
Q Consensus       147 ~~~~~d~~~A~~~~~kAA~~----G~----~~A~~~Lg~~y~~-G~G---------------v~~d~~~A~~w~~~Aa~  201 (348)
                           ++++|..+|+++.+.    ++    ..+.+.+|.+|.. |.-               ..+++++|..+|+++.+
T Consensus        98 -----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~  171 (338)
T 3ro2_A           98 -----NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS  171 (338)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHH
T ss_pred             -----CHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence                 789999999998663    44    4488899998864 210               00117888888888754

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=96.72  E-value=0.0059  Score=46.00  Aligned_cols=65  Identities=12%  Similarity=0.116  Sum_probs=55.2

Q ss_pred             CCCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          127 KSHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       127 ~G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                      -.++.+.+.||.+|.. .|      ++++|+.+|+++.+.  .++.+.+.||.+|..    ..+.++|+.+|++|.+.
T Consensus         4 p~~~~~~~~lg~~~~~-~g------~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l   70 (100)
T 3ma5_A            4 PEDPFTRYALAQEHLK-HD------NASRALALFEELVETDPDYVGTYYHLGKLYER----LDRTDDAIDTYAQGIEV   70 (100)
T ss_dssp             -CCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhh
Confidence            4578999999999964 33      799999999999875  578999999999976    56899999999999853

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=96.69  E-value=0.0067  Score=43.66  Aligned_cols=60  Identities=22%  Similarity=0.207  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQF  141 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~  141 (348)
                      .++|+.+|+++.+.  .++.+.+.+|.+|. ..++.++|+.+|+++.+.  +++.+.++||.+|.
T Consensus        25 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~   88 (91)
T 1na3_A           25 YDEAIEYYQKALELDPNNAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ   88 (91)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            78999999999875  68999999999998 678999999999999876  68999999999885

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=96.64  E-value=0.028  Score=51.06  Aligned_cols=111  Identities=12%  Similarity=0.055  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHHHCC--CHH-HHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHH
Q 018965           81 SDSAHRFLKRCVFAG--NLE-ACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRA  155 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G--~~~-A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~  155 (348)
                      .++|...|+++.+..  +++ +.+.+|.++. ..++.++|+..|++|.+..  +......++.+.....|      ++++
T Consensus       115 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~------~~~~  187 (308)
T 2ond_A          115 YEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR-RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSK------DKSV  187 (308)
T ss_dssp             HHHHHHHHHHHHTSSSSCTHHHHHHHHHHHH-HHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSC------CHHH
T ss_pred             HHHHHHHHHHHHhccccCccHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC------CHHH
Confidence            677777888777643  454 6777777765 4456777888888887654  33343333433322223      7788


Q ss_pred             HHHHHHHHHh--CCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          156 GVALCARAAS--IGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       156 A~~~~~kAA~--~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                      |...|++|.+  -.++.+...++.++..    ..+.++|+.+|++|...
T Consensus       188 A~~~~~~al~~~p~~~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~  232 (308)
T 2ond_A          188 AFKIFELGLKKYGDIPEYVLAYIDYLSH----LNEDNNTRVLFERVLTS  232 (308)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHT----TCCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhc
Confidence            8888888865  4678888888887754    34888899999999885

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=96.53  E-value=0.01  Score=51.41  Aligned_cols=99  Identities=10%  Similarity=-0.022  Sum_probs=78.4

Q ss_pred             CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--C---HHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CC
Q 018965           96 NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--H---APALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GH  168 (348)
Q Consensus        96 ~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~---~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~  168 (348)
                      ++++.|.+|..++ ..+++++|+..|+++.+..  +   +.+++.+|.+|.. .|      ++.+|+..|+++.+.  .+
T Consensus         3 ~~~~~~~~a~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~-~~------~~~~A~~~~~~~l~~~P~~   74 (225)
T 2yhc_A            3 PPNEIYATAQQKL-QDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK-NA------DLPLAQAAIDRFIRLNPTH   74 (225)
T ss_dssp             CHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTC
T ss_pred             CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh-cC------CHHHHHHHHHHHHHHCcCC
Confidence            5678899999988 6789999999999998742  2   4799999999974 23      799999999999874  33


Q ss_pred             H---HHHHHHHHHHhcc----------CC----CCCCHHHHHHHHHHHHhc
Q 018965          169 V---DAVRELGHCLQDG----------YG----VRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       169 ~---~A~~~Lg~~y~~G----------~G----v~~d~~~A~~w~~~Aa~~  202 (348)
                      +   .|.+.+|.+|..-          .+    -..+.++|+..|+++.+.
T Consensus        75 ~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~  125 (225)
T 2yhc_A           75 PNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG  125 (225)
T ss_dssp             TTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT
T ss_pred             CcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH
Confidence            3   4899999988641          11    134789999999999875

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=96.45  E-value=0.029  Score=50.97  Aligned_cols=111  Identities=7%  Similarity=0.026  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHHHC---CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHH-HHHHHHHHHHccCCCCCCccCHH
Q 018965           81 SDSAHRFLKRCVFA---GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAP-ALYSLAVIQFNGSGGGKNEKDLR  154 (348)
Q Consensus        81 ~~~A~~~~~kaA~~---G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~-A~~~Lg~~y~~G~g~~~~~~d~~  154 (348)
                      .++|...|++|.+.   +++.+.+.+|.++. ..++.++|...|++|.+..  ++. +...+|.++.. .      .+++
T Consensus        80 ~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-~------~~~~  151 (308)
T 2ond_A           80 SDEAANIYERAISTLLKKNMLLYFAYADYEE-SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR-A------EGIK  151 (308)
T ss_dssp             HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHH-H------HCHH
T ss_pred             hHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHH-h------cCHH
Confidence            47999999999983   67889999999987 5668999999999999865  455 88999988854 2      3689


Q ss_pred             HHHHHHHHHHhCCC--HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          155 AGVALCARAASIGH--VDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       155 ~A~~~~~kAA~~G~--~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                      +|...|++|.+...  ......++.+...   ...+.++|+..|++|.+.
T Consensus       152 ~A~~~~~~a~~~~p~~~~~~~~~a~~~~~---~~~~~~~A~~~~~~al~~  198 (308)
T 2ond_A          152 SGRMIFKKAREDARTRHHVYVTAALMEYY---CSKDKSVAFKIFELGLKK  198 (308)
T ss_dssp             HHHHHHHHHHTSTTCCTHHHHHHHHHHHH---TSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh
Confidence            99999999998643  3443333433221   135899999999999764

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=96.34  E-value=0.021  Score=46.90  Aligned_cols=79  Identities=14%  Similarity=0.171  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhh-hhhccCCH--HHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMI-RFYCLQNR--SSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDL  153 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~-y~~~~~d~--~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~  153 (348)
                      .++|..+|+++.+.  .++.+.+.+|.+ |. ..++.  ++|+.+|+++.+.  .++.+.+.||.+|.. .|      ++
T Consensus        60 ~~~A~~~~~~al~~~p~~~~~~~~la~~l~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g------~~  131 (177)
T 2e2e_A           60 YSNSLLAYRQALQLRGENAELYAALATVLYY-QASQHMTAQTRAMIDKALALDSNEITALMLLASDAFM-QA------NY  131 (177)
T ss_dssp             HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHH-HTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cc------cH
Confidence            78999999998774  589999999999 65 44565  9999999999875  478999999999974 23      78


Q ss_pred             HHHHHHHHHHHhCC
Q 018965          154 RAGVALCARAASIG  167 (348)
Q Consensus       154 ~~A~~~~~kAA~~G  167 (348)
                      ++|..+|+++.+..
T Consensus       132 ~~A~~~~~~al~~~  145 (177)
T 2e2e_A          132 AQAIELWQKVMDLN  145 (177)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhhC
Confidence            99999999998763

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.06  E-value=0.029  Score=46.61  Aligned_cols=89  Identities=15%  Similarity=0.057  Sum_probs=65.8

Q ss_pred             CHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhCC----CHHHHHHHHHHHhccCCCC
Q 018965          113 NRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASIG----HVDAVRELGHCLQDGYGVR  186 (348)
Q Consensus       113 d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~G----~~~A~~~Lg~~y~~G~Gv~  186 (348)
                      +...+.+-|.++.+.|  +.+++|++|..+... .   .+.|..+++..|+...+..    +.++.|+||..|..    .
T Consensus        13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S-~---~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~k----l   84 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRS-K---YNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR----L   84 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTC-S---SHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH----T
T ss_pred             HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcC-C---CHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHH----c
Confidence            4456667777776654  578888888888763 3   4678888888888888876    36788888887755    5


Q ss_pred             CCHHHHHHHHHHHHhcC--CHHHHH
Q 018965          187 QNIEKGRRLLIEANARE--FFQSVS  209 (348)
Q Consensus       187 ~d~~~A~~w~~~Aa~~G--~~~A~~  209 (348)
                      +|+.+|+++++++-+..  |.+|+.
T Consensus        85 ~~Y~~A~~y~~~lL~ieP~n~QA~~  109 (152)
T 1pc2_A           85 KEYEKALKYVRGLLQTEPQNNQAKE  109 (152)
T ss_dssp             SCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCCCCHHHHH
Confidence            68899999998886654  455554

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=96.02  E-value=0.026  Score=47.31  Aligned_cols=78  Identities=15%  Similarity=0.027  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHHCCC---------H-----HHHHHhhhhhhhccCCHHHHHHHHHHHHhC---------CCHHHH----
Q 018965           81 SDSAHRFLKRCVFAGN---------L-----EACYTLGMIRFYCLQNRSSGTSLMAKAAMK---------SHAPAL----  133 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G~---------~-----~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~---------G~~~A~----  133 (348)
                      +++|+..|++|.+...         .     .+++++|.++. .-+++++|+..|.+|.+.         .++.|+    
T Consensus        27 ~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~-~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~  105 (159)
T 2hr2_A           27 YDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA-GLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAV  105 (159)
T ss_dssp             HHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHH
Confidence            7899999999887642         2     28999999987 457899999999999976         678888    


Q ss_pred             HHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC
Q 018965          134 YSLAVIQFNGSGGGKNEKDLRAGVALCARAASI  166 (348)
Q Consensus       134 ~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~  166 (348)
                      |++|..+. +.|      ++++|+..|++|.+.
T Consensus       106 ~~rG~aL~-~lg------r~eEAl~~y~kAlel  131 (159)
T 2hr2_A          106 YSRALALD-GLG------RGAEAMPEFKKVVEM  131 (159)
T ss_dssp             HHHHHHHH-HTT------CHHHHHHHHHHHHHH
T ss_pred             HhHHHHHH-HCC------CHHHHHHHHHHHHhc
Confidence            99999985 344      789999999998653

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=95.98  E-value=0.099  Score=48.20  Aligned_cols=110  Identities=12%  Similarity=0.042  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHH----CCCH----HHHHHhhhhhhhccCCHHHHHHHHHHHHhCC----------CHHHHHHHHHHHHc
Q 018965           81 SDSAHRFLKRCVF----AGNL----EACYTLGMIRFYCLQNRSSGTSLMAKAAMKS----------HAPALYSLAVIQFN  142 (348)
Q Consensus        81 ~~~A~~~~~kaA~----~G~~----~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G----------~~~A~~~Lg~~y~~  142 (348)
                      .++|..+++++.+    .|++    .+.+.+|.+|. ..+++.+|+.+|+++.+..          ...+..+||.+|..
T Consensus        69 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  147 (373)
T 1hz4_A           69 LTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF-AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA  147 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHH
Confidence            7788888888765    4555    34678888887 6789999999999987632          24567789988854


Q ss_pred             cCCCCCCccCHHHHHHHHHHHHhC----C---CHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          143 GSGGGKNEKDLRAGVALCARAASI----G---HVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       143 G~g~~~~~~d~~~A~~~~~kAA~~----G---~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                       .|      ++++|..+|+++.+.    |   ...+.+.||.++..    ..|.++|..+++++...
T Consensus       148 -~g------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~l~~a~~~  203 (373)
T 1hz4_A          148 -WA------RLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLA----RGDLDNARSQLNRLENL  203 (373)
T ss_dssp             -TT------CHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHH
T ss_pred             -hc------CHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence             34      789999999998763    2   24678889988765    45899999999998753

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=95.93  E-value=0.057  Score=49.86  Aligned_cols=110  Identities=19%  Similarity=0.153  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHHHC---CCHH----HHHHhhhhhhhccCCHHHHHHHHHHHHh----CCCH----HHHHHHHHHHHccCC
Q 018965           81 SDSAHRFLKRCVFA---GNLE----ACYTLGMIRFYCLQNRSSGTSLMAKAAM----KSHA----PALYSLAVIQFNGSG  145 (348)
Q Consensus        81 ~~~A~~~~~kaA~~---G~~~----A~~~Lg~~y~~~~~d~~~A~~~~~~AA~----~G~~----~A~~~Lg~~y~~G~g  145 (348)
                      .++|..+++++.+.   +++.    +.+.+|.+|. ...++++|..+|++|.+    .|++    .+.+++|.+|.. .|
T Consensus        30 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~G  107 (373)
T 1hz4_A           30 PDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH-CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA-QG  107 (373)
T ss_dssp             HHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TT
T ss_pred             HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH-CC
Confidence            67888999888764   3332    6778888877 57799999999999875    3554    346788988864 34


Q ss_pred             CCCCccCHHHHHHHHHHHHhC----C------CHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          146 GGKNEKDLRAGVALCARAASI----G------HVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       146 ~~~~~~d~~~A~~~~~kAA~~----G------~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                            ++.+|..+|+++.+.    |      ...+..+||.+|..    ..++++|..++++|.+.
T Consensus       108 ------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  164 (373)
T 1hz4_A          108 ------FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA----WARLDEAEASARSGIEV  164 (373)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             ------CHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHH
Confidence                  789999999998752    2      24567789988764    35899999999998764

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=95.66  E-value=0.072  Score=44.19  Aligned_cols=88  Identities=9%  Similarity=0.007  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHH--CCCHHHHHHhhhhhh--hccCCHHHHHHHHHHHHhCC----CHHHHHHHHHHHHccCCCCCCccCH
Q 018965           82 DSAHRFLKRCVF--AGNLEACYTLGMIRF--YCLQNRSSGTSLMAKAAMKS----HAPALYSLAVIQFNGSGGGKNEKDL  153 (348)
Q Consensus        82 ~~A~~~~~kaA~--~G~~~A~~~Lg~~y~--~~~~d~~~A~~~~~~AA~~G----~~~A~~~Lg~~y~~G~g~~~~~~d~  153 (348)
                      ..+.+-|.+..+  ..+++++|++|..+.  ..+.|..+|+.+|+...+..    +.++.|+||+-|..       -.|+
T Consensus        15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~k-------l~~Y   87 (152)
T 1pc2_A           15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR-------LKEY   87 (152)
T ss_dssp             HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH-------TSCH
T ss_pred             HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHH-------ccCH
Confidence            455666676666  446899999999988  34457889999999999987    36799999999953       3489


Q ss_pred             HHHHHHHHHHHhC--CCHHHHHHHH
Q 018965          154 RAGVALCARAASI--GHVDAVRELG  176 (348)
Q Consensus       154 ~~A~~~~~kAA~~--G~~~A~~~Lg  176 (348)
                      .+|.++++++-+.  +|.+|+.-.-
T Consensus        88 ~~A~~y~~~lL~ieP~n~QA~~Lk~  112 (152)
T 1pc2_A           88 EKALKYVRGLLQTEPQNNQAKELER  112 (152)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            9999999998764  6777776544

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=95.53  E-value=0.074  Score=47.96  Aligned_cols=110  Identities=8%  Similarity=-0.044  Sum_probs=79.8

Q ss_pred             cHHHHHHHHHHHHHCC-C-HHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHH
Q 018965           80 WSDSAHRFLKRCVFAG-N-LEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRA  155 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~G-~-~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~  155 (348)
                      -.++|..+|+++.+.. + ......++..+. ...+...|+..|+++.+.  +++.+.++||.+|... |      ++++
T Consensus       166 ~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~-~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~-g------~~~~  237 (287)
T 3qou_A          166 RSEDAEAVLXTIPLQDQDTRYQGLVAQIELL-XQAADTPEIQQLQQQVAENPEDAALATQLALQLHQV-G------RNEE  237 (287)
T ss_dssp             CHHHHHHHHTTSCGGGCSHHHHHHHHHHHHH-HHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-T------CHHH
T ss_pred             CHHHHHHHHHhCchhhcchHHHHHHHHHHHH-hhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHc-c------cHHH
Confidence            3789999999876542 2 333333343333 233455688899998865  5899999999999742 3      6899


Q ss_pred             HHHHHHHHHhC--CC--HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965          156 GVALCARAASI--GH--VDAVRELGHCLQDGYGVRQNIEKGRRLLIEANA  201 (348)
Q Consensus       156 A~~~~~kAA~~--G~--~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~  201 (348)
                      |+..|+++...  ++  ..+..+|+.+|..    ..+..+|..+|+++..
T Consensus       238 A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~----~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          238 ALELLFGHLRXDLTAADGQTRXTFQEILAA----LGTGDALASXYRRQLY  283 (287)
T ss_dssp             HHHHHHHHHHHCTTGGGGHHHHHHHHHHHH----HCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccccccchHHHHHHHHHHH----cCCCCcHHHHHHHHHH
Confidence            99999999875  45  8899999999875    2245678888888753

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=95.52  E-value=0.055  Score=40.13  Aligned_cols=65  Identities=6%  Similarity=-0.074  Sum_probs=54.3

Q ss_pred             CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCC
Q 018965          129 HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREF  204 (348)
Q Consensus       129 ~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~  204 (348)
                      ++.+.+.+|..|..       ..++.+|+.+|++|.+.  .++.+.+++|.+|..    ..++++|+.+|++|.+...
T Consensus         3 ~~~~~~~~g~~~~~-------~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p   69 (111)
T 2l6j_A            3 QFEKQKEQGNSLFK-------QGLYREAVHCYDQLITAQPQNPVGYSNKAMALIK----LGEYTQAIQMCQQGLRYTS   69 (111)
T ss_dssp             HHHHHHHHHHHHHT-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTSCS
T ss_pred             hHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCC
Confidence            45788999999863       23899999999999874  689999999999876    4589999999999987643

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=95.49  E-value=0.063  Score=40.82  Aligned_cols=71  Identities=13%  Similarity=0.134  Sum_probs=55.3

Q ss_pred             CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC---------CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHH
Q 018965          129 HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI---------GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEA  199 (348)
Q Consensus       129 ~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~---------G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~A  199 (348)
                      ++.-+|.||..++.       ..|+.+|+.||++|.+.         ..++....||.+|..    ..|+++|+.++++|
T Consensus         4 sa~dc~~lG~~~~~-------~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~----~g~~~~A~~~~~~a   72 (104)
T 2v5f_A            4 TAEDCFELGKVAYT-------EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ----QGDLDKALLLTKKL   72 (104)
T ss_dssp             CHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH----TTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH-------ccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHH----ccCHHHHHHHHHHH
Confidence            46678999999874       34899999999999873         347788999998875    44899999999999


Q ss_pred             HhcC--CHHHHHh
Q 018965          200 NARE--FFQSVSK  210 (348)
Q Consensus       200 a~~G--~~~A~~~  210 (348)
                      ....  +..+..+
T Consensus        73 l~l~P~~~~~~~n   85 (104)
T 2v5f_A           73 LELDPEHQRANGN   85 (104)
T ss_dssp             HHHCTTCHHHHHH
T ss_pred             HhcCCCCHHHHhh
Confidence            7543  4455443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.00  E-value=0.37  Score=53.34  Aligned_cols=100  Identities=15%  Similarity=0.156  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHH
Q 018965           82 DSAHRFLKRCVFAGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCA  161 (348)
Q Consensus        82 ~~A~~~~~kaA~~G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~  161 (348)
                      ++|.+++.+.   .++...+.+|..+. ...+.++|+..|.+|   +++.+.+++|..+.. .|      +++.|+++|.
T Consensus      1093 drAiE~Aerv---n~p~vWsqLAKAql-~~G~~kEAIdsYiKA---dD~say~eVa~~~~~-lG------kyEEAIeyL~ 1158 (1630)
T 1xi4_A         1093 DRAYEFAERC---NEPAVWSQLAKAQL-QKGMVKEAIDSYIKA---DDPSSYMEVVQAANT-SG------NWEELVKYLQ 1158 (1630)
T ss_pred             HHHHHHHHhc---CCHHHHHHHHHHHH-hCCCHHHHHHHHHhc---CChHHHHHHHHHHHH-cC------CHHHHHHHHH
Confidence            4444444433   56777888888877 566788888888887   788888888888754 22      6677777776


Q ss_pred             HHHhCC-----------------------------CHHHHHHHHHHHhccCCCCCCHHHHHHHHHHH
Q 018965          162 RAASIG-----------------------------HVDAVRELGHCLQDGYGVRQNIEKGRRLLIEA  199 (348)
Q Consensus       162 kAA~~G-----------------------------~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~A  199 (348)
                      +|-+..                             +....+.+|..+..    ..++++|..+|.+|
T Consensus      1159 mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~----eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A         1159 MARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYD----EKMYDAAKLLYNNV 1221 (1630)
T ss_pred             HHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHh----cCCHHHHHHHHHhh
Confidence            644322                             22334445554443    45777888888776

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.98  E-value=0.12  Score=38.86  Aligned_cols=64  Identities=11%  Similarity=-0.039  Sum_probs=32.4

Q ss_pred             CHHHHHHhhhhhh--hccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC
Q 018965           96 NLEACYTLGMIRF--YCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI  166 (348)
Q Consensus        96 ~~~A~~~Lg~~y~--~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~  166 (348)
                      |++..+.+|..++  +......+|..+|++|...  .++.|.+.||.+++. .|      |+.+|+.+|++..++
T Consensus         5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~-~g------~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFI-SF------RFQEAIDTWVLLLDS   72 (93)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHhh
Confidence            4555555555543  2223345555555555443  355555555555543 12      455555555555544

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=94.92  E-value=0.17  Score=46.29  Aligned_cols=78  Identities=15%  Similarity=0.039  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHHCCCH----HHHHHhhhhhhhccCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHccCCCCCCcc
Q 018965           81 SDSAHRFLKRCVFAGNL----EACYTLGMIRFYCLQNRSSGTSLMAKAAMKS-----HAPALYSLAVIQFNGSGGGKNEK  151 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G~~----~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G-----~~~A~~~Lg~~y~~G~g~~~~~~  151 (348)
                      .++|+..|+++....++    .+.|.||.++. .-++..+|+.||+++....     .+++++++|.++.. .|      
T Consensus       151 ~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~-~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~-lG------  222 (282)
T 4f3v_A          151 WTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAA-NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRS-QG------  222 (282)
T ss_dssp             HHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHH-HT------
T ss_pred             HHHHHHHHHHhhccCCcccHHHHHHHHHHHHH-HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHH-cC------
Confidence            57889999877766544    48999999988 5679999999999998665     34699999999864 34      


Q ss_pred             CHHHHHHHHHHHHhC
Q 018965          152 DLRAGVALCARAASI  166 (348)
Q Consensus       152 d~~~A~~~~~kAA~~  166 (348)
                      +.++|...|+++...
T Consensus       223 r~deA~~~l~~a~a~  237 (282)
T 4f3v_A          223 NESAAVALLEWLQTT  237 (282)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhc
Confidence            679999999998765

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=94.89  E-value=0.11  Score=38.01  Aligned_cols=64  Identities=8%  Similarity=-0.042  Sum_probs=44.6

Q ss_pred             HHhhhhhhhccCCHHHHHHHHHHHHhC--CCHH-HHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHHHH
Q 018965          101 YTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAP-ALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVDAV  172 (348)
Q Consensus       101 ~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~-A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~  172 (348)
                      +.+|..++ ..++.++|+.+|+++.+.  .++. +.+.+|.+|.. .|      ++++|+.+|+++.+.  .++.+.
T Consensus         4 ~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~-~~------~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A            4 LKTIKELI-NQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRK-LG------DWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             HHHHHHHH-HHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH-HT------CHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHHHHHHH-HcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHhcCCCcHHHH
Confidence            45566665 566788888888888765  3667 88888888863 22      678888888888764  344444

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=94.84  E-value=0.33  Score=47.38  Aligned_cols=112  Identities=12%  Similarity=0.051  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHHCCC--H-HHHHHhhhhhhhccCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHHccCCCCCCccCHHH
Q 018965           81 SDSAHRFLKRCVFAGN--L-EACYTLGMIRFYCLQNRSSGTSLMAKAAMKSH--APALYSLAVIQFNGSGGGKNEKDLRA  155 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G~--~-~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G~--~~A~~~Lg~~y~~G~g~~~~~~d~~~  155 (348)
                      .++|...|+++.+...  + .+...+|.++. ..++.++|...|++|.+...  .......+.+...-.|      |+++
T Consensus       337 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~------~~~~  409 (530)
T 2ooe_A          337 YEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR-RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSK------DKSV  409 (530)
T ss_dssp             HHHHHHHHHHHHHSSSSCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTC------CHHH
T ss_pred             HHHHHHHHHHHhCccccCchHHHHHHHHHHH-HhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcC------ChhH
Confidence            5566666666665432  2 34444444443 23345666666666665432  2223333333211122      5677


Q ss_pred             HHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965          156 GVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE  203 (348)
Q Consensus       156 A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G  203 (348)
                      |...|++|.+.  .++.....++.++..    ..|.++|+.+|++|...+
T Consensus       410 A~~~~e~al~~~p~~~~~~~~~~~~~~~----~g~~~~Ar~~~~~al~~~  455 (530)
T 2ooe_A          410 AFKIFELGLKKYGDIPEYVLAYIDYLSH----LNEDNNTRVLFERVLTSG  455 (530)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHTT----TTCHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHh----CCCHhhHHHHHHHHHhcc
Confidence            77777777653  456777777776654    237777888888877654

>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.68  E-value=0.046  Score=37.28  Aligned_cols=43  Identities=35%  Similarity=0.790  Sum_probs=30.7

Q ss_pred             CCCccccccCCCCCCCCccccccccCCCCCceeecChHHHHHhchhhchhcCCCCC
Q 018965          266 LGNGLRLCSYSGCGRPETRVHEYRRCSVCGKVNYCSRACQAIDWKTRHKRECVPPL  321 (348)
Q Consensus       266 ~~~~~~~C~~~~C~~~~~~~~~l~~C~~C~~~~YCs~~CQ~~~W~~~Hk~~C~~~~  321 (348)
                      +......|..  |+....     .+|.+|. ++|||..|.    +. ||..|...+
T Consensus         8 ~~~~~~~C~v--C~~~~k-----Y~CPrC~-~~yCSl~C~----k~-Hk~~C~~~~   50 (56)
T 2yqq_A            8 LKCSTVVCVI--CLEKPK-----YRCPACR-VPYCSVVCF----RK-HKEQCNPET   50 (56)
T ss_dssp             CCCCCCCCTT--TCSCCS-----EECTTTC-CEESSHHHH----HH-HHHHCCCCC
T ss_pred             cCCCCCccCc--CcCCCe-----eeCCCCC-CCeeCHHHH----HH-HHhhCcCCc
Confidence            3344456875  776333     7899998 899999996    44 676787655

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.64  E-value=0.17  Score=37.86  Aligned_cols=71  Identities=8%  Similarity=-0.146  Sum_probs=57.4

Q ss_pred             CCCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCC
Q 018965          127 KSHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAAS--IGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREF  204 (348)
Q Consensus       127 ~G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~--~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~  204 (348)
                      -.+++..+.+|..+....+    .....+|..+|++|..  -.++.|.+.||..+..    ..|+.+|+.+|++..++..
T Consensus         3 p~~~~~~~~~a~al~~~~~----~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~----~g~y~~Ai~~w~~~l~~~p   74 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHK----QAMTDEVSLLLEQALQLEPYNEAALSLIANDHFI----SFRFQEAIDTWVLLLDSND   74 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTT----TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTCCC
T ss_pred             CCCHHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCC
Confidence            3578888999988754332    2356899999999976  4799999999998887    6799999999999988766


Q ss_pred             H
Q 018965          205 F  205 (348)
Q Consensus       205 ~  205 (348)
                      .
T Consensus        75 ~   75 (93)
T 3bee_A           75 P   75 (93)
T ss_dssp             T
T ss_pred             C
Confidence            5

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=94.28  E-value=0.23  Score=45.66  Aligned_cols=102  Identities=10%  Similarity=-0.048  Sum_probs=77.0

Q ss_pred             CHHHHHHhhhhhh---hcc-------CCHHHHHHHHHHHHhCC----CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHH
Q 018965           96 NLEACYTLGMIRF---YCL-------QNRSSGTSLMAKAAMKS----HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCA  161 (348)
Q Consensus        96 ~~~A~~~Lg~~y~---~~~-------~d~~~A~~~~~~AA~~G----~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~  161 (348)
                      ++++.|.+|....   +..       ....+|...+++|.+..    +..|+..||.+|..=.+.  .--|.++|.+.|+
T Consensus       151 dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~--~gGd~ekA~~~fe  228 (301)
T 3u64_A          151 DVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPES--FGGGMEKAHTAFE  228 (301)
T ss_dssp             GHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTT--TTCCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCc--cCCCHHHHHHHHH
Confidence            4788888888764   221       24678999999999885    345999999999762100  0128999999999


Q ss_pred             HHHhC---CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          162 RAASI---GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       162 kAA~~---G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                      +|.+.   |+.+..+.+|..|..-   ..|.+++..++++|...
T Consensus       229 rAL~LnP~~~id~~v~YA~~l~~~---~gd~~~a~~~L~kAL~a  269 (301)
T 3u64_A          229 HLTRYCSAHDPDHHITYADALCIP---LNNRAGFDEALDRALAI  269 (301)
T ss_dssp             HHHHHCCTTCSHHHHHHHHHTTTT---TTCHHHHHHHHHHHHHC
T ss_pred             HHHHhCCCCCchHHHHHHHHHHHh---cCCHHHHHHHHHHHHcC
Confidence            99874   4599999999988642   25899999999999753

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=93.06  E-value=0.48  Score=46.22  Aligned_cols=110  Identities=6%  Similarity=0.010  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHH---CCCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCCC--H-HHHHHHHHHHHccCCCCCCccCHHH
Q 018965           82 DSAHRFLKRCVF---AGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKSH--A-PALYSLAVIQFNGSGGGKNEKDLRA  155 (348)
Q Consensus        82 ~~A~~~~~kaA~---~G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G~--~-~A~~~Lg~~y~~G~g~~~~~~d~~~  155 (348)
                      ++|...|++|.+   -.++...+.+|.++. ..++.++|...|+++.+...  + .+...+|.++.. .      .+.++
T Consensus       303 ~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-~------~~~~~  374 (530)
T 2ooe_A          303 DEAANIYERAISTLLKKNMLLYFAYADYEE-SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR-A------EGIKS  374 (530)
T ss_dssp             HHHHHHHHHHTTTTCSSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHH-H------HHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHH-hcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHH-h------cCHHH
Confidence            389999999986   357889999998887 45789999999999998754  3 477788877753 2      26789


Q ss_pred             HHHHHHHHHhCCC--HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          156 GVALCARAASIGH--VDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       156 A~~~~~kAA~~G~--~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                      |...|.+|.+...  .......+.+...   ...|.++|+..|++|.+.
T Consensus       375 A~~~~~~Al~~~~~~~~~~~~~a~~~~~---~~~~~~~A~~~~e~al~~  420 (530)
T 2ooe_A          375 GRMIFKKAREDARTRHHVYVTAALMEYY---CSKDKSVAFKIFELGLKK  420 (530)
T ss_dssp             HHHHHHHHHTCTTCCTHHHHHHHHHHHH---HTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCchHHHHHHHHHHHH---HcCChhHHHHHHHHHHHH
Confidence            9999999998653  3333333433211   135889999999999765

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=92.48  E-value=0.32  Score=35.36  Aligned_cols=59  Identities=12%  Similarity=0.021  Sum_probs=48.0

Q ss_pred             HHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHH-HHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965          134 YSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVD-AVRELGHCLQDGYGVRQNIEKGRRLLIEANARE  203 (348)
Q Consensus       134 ~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~-A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G  203 (348)
                      +.+|..|..       ..++.+|+.+|+++.+.  .++. +.+.+|.+|..    ..+.++|+.+|++|.+..
T Consensus         4 ~~~a~~~~~-------~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~   65 (99)
T 2kc7_A            4 LKTIKELIN-------QGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRK----LGDWQKALNNYQSAIELN   65 (99)
T ss_dssp             HHHHHHHHH-------HTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHH-------cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcC
Confidence            566777653       33789999999999875  5788 99999999875    458999999999998754

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=92.40  E-value=0.37  Score=44.60  Aligned_cols=110  Identities=6%  Similarity=-0.018  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHccCCCCCCccCHHHHH
Q 018965           84 AHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK----SHAPALYSLAVIQFNGSGGGKNEKDLRAGV  157 (348)
Q Consensus        84 A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~----G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~  157 (348)
                      ++..|++..+.  .+..+.+.+|.+|. ..+|.++|+.|+.+..+.    ++.++...++.+|+. .|      ++++|.
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~-~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~-~~------r~d~A~  156 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQA-ILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALL-NN------NVSTAS  156 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHH-TT------CHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHH-HcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHH-CC------CHHHHH
Confidence            66777776664  56777889999988 678999999999999776    478888888888875 23      578899


Q ss_pred             HHHHHHHhCCC------HHHHHHHHHHH---hccCCCCCCHHHHHHHHHHHHhcCC
Q 018965          158 ALCARAASIGH------VDAVRELGHCL---QDGYGVRQNIEKGRRLLIEANAREF  204 (348)
Q Consensus       158 ~~~~kAA~~G~------~~A~~~Lg~~y---~~G~Gv~~d~~~A~~w~~~Aa~~G~  204 (348)
                      +.+++..+...      -....+|+..+   ..|.   .+...|+..|+..++...
T Consensus       157 k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~---~~~q~A~~~f~El~~~~p  209 (310)
T 3mv2_B          157 TIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNK---ETATSNFYYYEELSQTFP  209 (310)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTC---STTTHHHHHHHHHHTTSC
T ss_pred             HHHHHHHhcCccccccchHHHHHHHHHHHHHHhCC---ccHHHHHHHHHHHHHhCC
Confidence            99988765543      45566666442   2232   257889999999877754

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=92.18  E-value=0.8  Score=50.75  Aligned_cols=100  Identities=15%  Similarity=0.131  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHccCCCCCCccCHHHHHHHH
Q 018965           81 SDSAHRFLKRCVFAGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGGKNEKDLRAGVALC  160 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~  160 (348)
                      .++|+..|+|+-  -+.+|+-.|   +. .-++.++|.+++++.   ..+...++||..++.. |      .+++|+..|
T Consensus      1065 yEEAf~IYkKa~--~~~~A~~VL---ie-~i~nldrAiE~Aerv---n~p~vWsqLAKAql~~-G------~~kEAIdsY 1128 (1630)
T 1xi4_A         1065 FEEAFAIFRKFD--VNTSAVQVL---IE-HIGNLDRAYEFAERC---NEPAVWSQLAKAQLQK-G------MVKEAIDSY 1128 (1630)
T ss_pred             HHHHHHHHHHcC--CHHHHHHHH---HH-HHhhHHHHHHHHHhc---CCHHHHHHHHHHHHhC-C------CHHHHHHHH
Confidence            899999999973  233332211   22 346789999999877   6799999999999764 3      689999999


Q ss_pred             HHHHhCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965          161 ARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE  203 (348)
Q Consensus       161 ~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G  203 (348)
                      .+|   +++.+.++++..+..    ..++++|.+||.+|-...
T Consensus      1129 iKA---dD~say~eVa~~~~~----lGkyEEAIeyL~mArk~~ 1164 (1630)
T 1xi4_A         1129 IKA---DDPSSYMEVVQAANT----SGNWEELVKYLQMARKKA 1164 (1630)
T ss_pred             Hhc---CChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhc
Confidence            997   999999999999886    559999999999987655

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=91.98  E-value=0.039  Score=50.83  Aligned_cols=46  Identities=26%  Similarity=0.255  Sum_probs=40.4

Q ss_pred             CCCCCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHhHHHHhccCCchhhcc
Q 018965           17 PDLFDALPDDLLECVLSKLISSAPSPSDFINVLLTCKRLNRVGLRPTVLSQ   67 (348)
Q Consensus        17 ~~~~~~l~~d~l~~il~~~a~~~~s~~d~~~~~l~~k~~~~~~~~~~~l~~   67 (348)
                      ++.||.||+|++..||+.+     +|.|+..+..+|+.|+.++.++..+..
T Consensus         2 ~~~l~~LP~ei~l~IlsfL-----~p~DL~~l~~vcr~Wr~la~D~~LWr~   47 (312)
T 3l2o_B            2 ASTLTRLPIDVQLYILSFL-----SPHDLCQLGSTNHYWNETVRDPILWRY   47 (312)
T ss_dssp             CCHHHHSCHHHHHHHHHTS-----CHHHHHHHHTTCHHHHHHHTCHHHHHH
T ss_pred             cchhHhCCHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHhccchHHHH
Confidence            5678999999999999976     778999999999999999998876643

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=91.49  E-value=2.2  Score=39.31  Aligned_cols=118  Identities=8%  Similarity=-0.030  Sum_probs=83.9

Q ss_pred             CcHHHHHHHHHHHHHC----CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCCC------HHHHHHHHHH--HH-ccCC
Q 018965           79 NWSDSAHRFLKRCVFA----GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKSH------APALYSLAVI--QF-NGSG  145 (348)
Q Consensus        79 ~~~~~A~~~~~kaA~~----G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G~------~~A~~~Lg~~--y~-~G~g  145 (348)
                      ...++|++|+.+..+.    ++.+++..+..+|+ ...+.++|.+.+++..+...      -....+|+..  .+ .|.+
T Consensus       114 g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L-~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~  192 (310)
T 3mv2_B          114 GDLDKSLETCVEGIDNDEAEGTTELLLLAIEVAL-LNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKE  192 (310)
T ss_dssp             TCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred             CCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCc
Confidence            3489999999999776    57899999999998 56779999999988766643      3455666644  32 2322


Q ss_pred             CCCCccCHHHHHHHHHHHHhCCC----HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH------------hcCCHHHHH
Q 018965          146 GGKNEKDLRAGVALCARAASIGH----VDAVRELGHCLQDGYGVRQNIEKGRRLLIEAN------------AREFFQSVS  209 (348)
Q Consensus       146 ~~~~~~d~~~A~~~~~kAA~~G~----~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa------------~~G~~~A~~  209 (348)
                            +++.|+..|+..++...    +...++   ++..    ..++++|...+++.-            +..++.+..
T Consensus       193 ------~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~----~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~La  259 (310)
T 3mv2_B          193 ------TATSNFYYYEELSQTFPTWKTQLGLLN---LHLQ----QRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLA  259 (310)
T ss_dssp             ------TTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHH----HTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHH
T ss_pred             ------cHHHHHHHHHHHHHhCCCcccHHHHHH---HHHH----cCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHH
Confidence                  57899999999988753    334444   3322    248899998887543            356777775


Q ss_pred             h
Q 018965          210 K  210 (348)
Q Consensus       210 ~  210 (348)
                      +
T Consensus       260 N  260 (310)
T 3mv2_B          260 N  260 (310)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=90.93  E-value=5.4  Score=37.69  Aligned_cols=114  Identities=9%  Similarity=-0.051  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhh----hccCC--HHHHHHHHHHHH-----hCCCHHHHHHHHHHHHccCCCC
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRF----YCLQN--RSSGTSLMAKAA-----MKSHAPALYSLAVIQFNGSGGG  147 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~----~~~~d--~~~A~~~~~~AA-----~~G~~~A~~~Lg~~y~~G~g~~  147 (348)
                      ..+|+.+|++|.+.  +++.|+-.++..|.    ..+.+  ...++.--.+++     ...++.+...++.++.. .|  
T Consensus       215 ~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~-~g--  291 (372)
T 3ly7_A          215 LNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALV-KG--  291 (372)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHH-HT--
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHh-CC--
Confidence            58999999999875  68888888888775    11112  222222112222     13467777777777642 24  


Q ss_pred             CCccCHHHHHHHHHHHHhCC-CHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCH
Q 018965          148 KNEKDLRAGVALCARAASIG-HVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFF  205 (348)
Q Consensus       148 ~~~~d~~~A~~~~~kAA~~G-~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~  205 (348)
                          |+++|+.++++|.... +..+...+|.++..    .-+.++|..+|.+|....-.
T Consensus       292 ----d~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~----~G~~~eA~e~~~~AlrL~P~  342 (372)
T 3ly7_A          292 ----KTDESYQAINTGIDLEMSWLNYVLLGKVYEM----KGMNREAADAYLTAFNLRPG  342 (372)
T ss_dssp             ----CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHSCS
T ss_pred             ----CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCC
Confidence                8999999999998875 34455677887763    45899999999999876543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=90.77  E-value=2.2  Score=41.22  Aligned_cols=80  Identities=14%  Similarity=0.116  Sum_probs=62.7

Q ss_pred             cCCHHHHHHHHHHHHhC-----C--CH---HHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHh-----CC--C---HH
Q 018965          111 LQNRSSGTSLMAKAAMK-----S--HA---PALYSLAVIQFNGSGGGKNEKDLRAGVALCARAAS-----IG--H---VD  170 (348)
Q Consensus       111 ~~d~~~A~~~~~~AA~~-----G--~~---~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~-----~G--~---~~  170 (348)
                      .+++++|..+|+++-+.     |  |+   ..+.+||..|.. .|      ++++|..+|+++.+     .|  +   ..
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~-~g------~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~  383 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLY-MQ------DWEGALKYGQKIIKPYSKHYPVYSLNVAS  383 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHh-hc------CHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence            34789999999999763     2  43   578899999964 34      78999999999876     34  4   34


Q ss_pred             HHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965          171 AVRELGHCLQDGYGVRQNIEKGRRLLIEANA  201 (348)
Q Consensus       171 A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~  201 (348)
                      ++++||.+|..    ..++++|..+|++|.+
T Consensus       384 ~l~nLa~~~~~----qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          384 MWLKLGRLYMG----LENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh----ccCHHHHHHHHHHHHH
Confidence            78899999976    3489999999999964

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=89.79  E-value=2.6  Score=33.58  Aligned_cols=89  Identities=15%  Similarity=0.048  Sum_probs=60.4

Q ss_pred             CHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhCCCH----HHHHHHHHHHhccCCCC
Q 018965          113 NRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASIGHV----DAVRELGHCLQDGYGVR  186 (348)
Q Consensus       113 d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~G~~----~A~~~Lg~~y~~G~Gv~  186 (348)
                      +......-|.++...|  ..+++|++|..+... .   .+.|..+++.+++.-...+++    +..|.||..+..    -
T Consensus        16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S-~---~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yk----l   87 (126)
T 1nzn_A           16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRT-R---YNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR----L   87 (126)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTS-S---SHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH----T
T ss_pred             HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcC-C---CHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH----h
Confidence            3445566676666644  477888888888663 3   577788888888888777643    577888876654    4


Q ss_pred             CCHHHHHHHHHHHHhcC--CHHHHH
Q 018965          187 QNIEKGRRLLIEANARE--FFQSVS  209 (348)
Q Consensus       187 ~d~~~A~~w~~~Aa~~G--~~~A~~  209 (348)
                      .|+.+|+++....-+..  |.+|+.
T Consensus        88 g~Y~~A~~~~~~lL~~eP~n~QA~~  112 (126)
T 1nzn_A           88 KEYEKALKYVRGLLQTEPQNNQAKE  112 (126)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHH
Confidence            58888888887765443  345443

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=88.59  E-value=0.17  Score=46.61  Aligned_cols=43  Identities=23%  Similarity=0.410  Sum_probs=36.5

Q ss_pred             CCCCCCChHHHHHHHHHhhcCCCCHHHHH-HHHHHhHHHHhccCCchhh
Q 018965           18 DLFDALPDDLLECVLSKLISSAPSPSDFI-NVLLTCKRLNRVGLRPTVL   65 (348)
Q Consensus        18 ~~~~~l~~d~l~~il~~~a~~~~s~~d~~-~~~l~~k~~~~~~~~~~~l   65 (348)
                      ..++.||+|++.+||.+|.     +.++. ...++||.|+.+..++..+
T Consensus        49 ~~~~~LP~ell~~Il~~Lp-----~~~L~~r~~~VCk~Wr~l~~~~~~w   92 (297)
T 2e31_A           49 EYLAELPEPLLLRVLAELP-----ATELVQACRLVCLRWKELVDGAPLW   92 (297)
T ss_dssp             CCTTSSCHHHHHHHHHTSC-----HHHHHHTGGGTCHHHHHHHTSHHHH
T ss_pred             cChhhCCHHHHHHHHHcCC-----HHHHHHHHHHHhHHHHHHhcChHHH
Confidence            4788899999999999884     46898 9999999999998765543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=87.69  E-value=6.4  Score=36.31  Aligned_cols=110  Identities=13%  Similarity=0.081  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHHHC----CCH----HHHHHhhhhhhhccCCHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHccC
Q 018965           81 SDSAHRFLKRCVFA----GNL----EACYTLGMIRFYCLQNRSSGTSLMAKAAMK--------SHAPALYSLAVIQFNGS  144 (348)
Q Consensus        81 ~~~A~~~~~kaA~~----G~~----~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--------G~~~A~~~Lg~~y~~G~  144 (348)
                      .++|..+|+++...    ++.    .....+|.++. ...+.++++.+++++.+.        +......+||.+|.   
T Consensus        71 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~---  146 (434)
T 4b4t_Q           71 KDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQ-VPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHY---  146 (434)
T ss_dssp             HHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCS-CCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHH---
Confidence            56677777665441    222    12233444444 667778888888877753        22556777777775   


Q ss_pred             CCCCCccCHHHHHHHHHHHHhC--------CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          145 GGGKNEKDLRAGVALCARAASI--------GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       145 g~~~~~~d~~~A~~~~~kAA~~--------G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                          ...++.+|...+.++...        ..+.+...+|.+|..    ..|+.+|..+|++|-..
T Consensus       147 ----~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~  204 (434)
T 4b4t_Q          147 ----QKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHK----LRNLAKSKASLTAARTA  204 (434)
T ss_dssp             ----HHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             ----HccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH----hCcHHHHHHHHHHHHHH
Confidence                456778888888877762        235567777777775    78888888888887654

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=87.63  E-value=2.7  Score=41.19  Aligned_cols=81  Identities=15%  Similarity=0.017  Sum_probs=63.0

Q ss_pred             ccCCHHHHHHHHHHHHhC-------CCH---HHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHh-----CC--C---H
Q 018965          110 CLQNRSSGTSLMAKAAMK-------SHA---PALYSLAVIQFNGSGGGKNEKDLRAGVALCARAAS-----IG--H---V  169 (348)
Q Consensus       110 ~~~d~~~A~~~~~~AA~~-------G~~---~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~-----~G--~---~  169 (348)
                      ...++++|+.+|+++-+.       .|+   ..+.+||.+|.. .|      ++++|..+|++|.+     .|  +   .
T Consensus       321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~-~g------~~~eA~~~~~~aL~i~~~~lG~~Hp~~a  393 (490)
T 3n71_A          321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSY-LQ------AYEEASHYARRMVDGYMKLYHHNNAQLG  393 (490)
T ss_dssp             TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred             hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-hc------CHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence            567889999999998764       344   578899999964 34      78999999999876     23  4   3


Q ss_pred             HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965          170 DAVRELGHCLQDGYGVRQNIEKGRRLLIEANA  201 (348)
Q Consensus       170 ~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~  201 (348)
                      .++++||.+|..    ..++++|..+|++|.+
T Consensus       394 ~~l~nLa~~~~~----~G~~~eA~~~~~~Al~  421 (490)
T 3n71_A          394 MAVMRAGLTNWH----AGHIEVGHGMICKAYA  421 (490)
T ss_dssp             HHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH----CCCHHHHHHHHHHHHH
Confidence            478899999986    3478999999999964

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=87.44  E-value=3.8  Score=37.50  Aligned_cols=110  Identities=9%  Similarity=0.042  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHC--CCHHHHHHhhhhhhhccC-----CHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCH
Q 018965           83 SAHRFLKRCVFA--GNLEACYTLGMIRFYCLQ-----NRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDL  153 (348)
Q Consensus        83 ~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~-----d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~  153 (348)
                      +++.++.++.+.  .|..|...-+.+......     ..+++++++.++.+.  ++..|.+.++.++.....      ..
T Consensus       164 ~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~------~~  237 (306)
T 3dra_A          164 KELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDR------SI  237 (306)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC------CG
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCC------Ch
Confidence            677777777664  467777777776652111     267788888887754  477888888877755322      23


Q ss_pred             HHHHHHHHHHHhCC-----CHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          154 RAGVALCARAASIG-----HVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       154 ~~A~~~~~kAA~~G-----~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                      +.....+.+..+.+     ++.|...|+.+|..    ..+.++|++.|.++++.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~----~~~~~~A~~~~~~l~~~  287 (306)
T 3dra_A          238 TQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQ----QKKYNESRTVYDLLKSK  287 (306)
T ss_dssp             GGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhc
Confidence            44445555555544     78888888888874    34788899999988864

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=86.93  E-value=2.2  Score=39.09  Aligned_cols=81  Identities=10%  Similarity=-0.108  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHHHCC----CHHHHHHhhhhhhhc----cCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHccCCCCCC
Q 018965           81 SDSAHRFLKRCVFAG----NLEACYTLGMIRFYC----LQNRSSGTSLMAKAAMKS---HAPALYSLAVIQFNGSGGGKN  149 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G----~~~A~~~Lg~~y~~~----~~d~~~A~~~~~~AA~~G---~~~A~~~Lg~~y~~G~g~~~~  149 (348)
                      ..+|...+++|.+..    +..|+..||.+|..+    ..|.++|...|++|.+.+   ++.+.+.+|..|..-.     
T Consensus       179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~-----  253 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPL-----  253 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTT-----
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhc-----
Confidence            568888999988864    356999999999844    469999999999999754   4999999999986533     


Q ss_pred             ccCHHHHHHHHHHHHhCC
Q 018965          150 EKDLRAGVALCARAASIG  167 (348)
Q Consensus       150 ~~d~~~A~~~~~kAA~~G  167 (348)
                       .|.+.+.+++++|-...
T Consensus       254 -gd~~~a~~~L~kAL~a~  270 (301)
T 3u64_A          254 -NNRAGFDEALDRALAID  270 (301)
T ss_dssp             -TCHHHHHHHHHHHHHCC
T ss_pred             -CCHHHHHHHHHHHHcCC
Confidence             48999999999997754

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=86.44  E-value=3.2  Score=38.44  Aligned_cols=77  Identities=9%  Similarity=0.031  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHHC----C----CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHccC
Q 018965           81 SDSAHRFLKRCVFA----G----NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--------SHAPALYSLAVIQFNGS  144 (348)
Q Consensus        81 ~~~A~~~~~kaA~~----G----~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--------G~~~A~~~Lg~~y~~G~  144 (348)
                      .+++..+++++.+.    +    -......||.+|. ..+++.+|+..++++...        ....+...+|.+|.   
T Consensus       111 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  186 (434)
T 4b4t_Q          111 LDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHY-QKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYH---  186 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHH-HccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH---
Confidence            56677776665432    2    2456777777777 677788888888777632        23456667777774   


Q ss_pred             CCCCCccCHHHHHHHHHHHHh
Q 018965          145 GGGKNEKDLRAGVALCARAAS  165 (348)
Q Consensus       145 g~~~~~~d~~~A~~~~~kAA~  165 (348)
                          ...|+.+|..+|++|-.
T Consensus       187 ----~~~~~~~A~~~~~~al~  203 (434)
T 4b4t_Q          187 ----KLRNLAKSKASLTAART  203 (434)
T ss_dssp             ----HTTCHHHHHHHHHHHHH
T ss_pred             ----HhCcHHHHHHHHHHHHH
Confidence                45677777777777754

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=86.25  E-value=4.3  Score=38.96  Aligned_cols=81  Identities=12%  Similarity=-0.007  Sum_probs=63.1

Q ss_pred             ccCCHHHHHHHHHHHHhC-------CC---HHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHh-----CC--C---H
Q 018965          110 CLQNRSSGTSLMAKAAMK-------SH---APALYSLAVIQFNGSGGGKNEKDLRAGVALCARAAS-----IG--H---V  169 (348)
Q Consensus       110 ~~~d~~~A~~~~~~AA~~-------G~---~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~-----~G--~---~  169 (348)
                      ...++++|+..|+++.+.       .|   ...+.+||..|.. .|      ++++|..+++++.+     .|  +   .
T Consensus       299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~-~g------~~~eA~~~~~~~L~i~~~~lg~~Hp~~a  371 (429)
T 3qwp_A          299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACIN-LG------LLEEALFYGTRTMEPYRIFFPGSHPVRG  371 (429)
T ss_dssp             HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHH-HT------CHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred             hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHh-hc------cHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence            456889999999999864       24   3578899999964 33      78999999999875     23  3   3


Q ss_pred             HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965          170 DAVRELGHCLQDGYGVRQNIEKGRRLLIEANA  201 (348)
Q Consensus       170 ~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~  201 (348)
                      ..+++||.+|..    .-++++|+.+|++|.+
T Consensus       372 ~~l~nLa~~~~~----~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          372 VQVMKVGKLQLH----QGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Confidence            478899999987    3478999999999974

>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2

Probab=85.52  E-value=0.49  Score=32.45  Aligned_cols=39  Identities=28%  Similarity=0.702  Sum_probs=26.3

Q ss_pred             cccccCCCCCCCCccccccccCCCCCceeecChHHHHHhchhhchhcCC
Q 018965          270 LRLCSYSGCGRPETRVHEYRRCSVCGKVNYCSRACQAIDWKTRHKRECV  318 (348)
Q Consensus       270 ~~~C~~~~C~~~~~~~~~l~~C~~C~~~~YCs~~CQ~~~W~~~Hk~~C~  318 (348)
                      ...|..  |...+. .....+|.+|. +.|||..|.+.     || .|.
T Consensus        11 ~~~C~v--C~~~~~-~~akY~CPrC~-~rYCSl~C~k~-----Hk-~Cs   49 (59)
T 1x4s_A           11 AGPCGF--CPAGEV-QPARYTCPRCN-APYCSLRCYRT-----HG-TCA   49 (59)
T ss_dssp             CEEECS--SCTTCC-EEECEECTTTC-CEESSHHHHHH-----HC-CGG
T ss_pred             CCcCcC--CCCCcC-CCccccCcCCC-CCccChHHHHH-----Hh-HhC
Confidence            347875  764110 12348899998 89999999984     65 464

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=84.91  E-value=8.8  Score=38.17  Aligned_cols=117  Identities=10%  Similarity=-0.001  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhh-hccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRF-YCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRA  155 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~-~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~  155 (348)
                      .++++.++.++.+.  .+..|.+.-+.++. ....+.++++.++.++.+..  +..|.+.-+.++..- |     ...++
T Consensus        89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l-~-----~~~~~  162 (567)
T 1dce_A           89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQA-A-----VAPAE  162 (567)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-C-----CCHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHc-C-----CChHH
Confidence            67899999999875  47889888888776 22336799999999999875  788999888887652 2     25789


Q ss_pred             HHHHHHHHHhC--CCHHHHHHHHHHHhc-c-C------C--CCCCHHHHHHHHHHHHhcC
Q 018965          156 GVALCARAASI--GHVDAVRELGHCLQD-G-Y------G--VRQNIEKGRRLLIEANARE  203 (348)
Q Consensus       156 A~~~~~kAA~~--G~~~A~~~Lg~~y~~-G-~------G--v~~d~~~A~~w~~~Aa~~G  203 (348)
                      +++++.++.+.  .+..|.++.+.++.. + .      |  ....+++++.++.+|....
T Consensus       163 el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~  222 (567)
T 1dce_A          163 ELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD  222 (567)
T ss_dssp             HHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC
Confidence            99999999876  689999999998765 1 1      1  1245789999999998654

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=82.31  E-value=14  Score=29.21  Aligned_cols=86  Identities=10%  Similarity=0.020  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHC--CCHHHHHHhhhhhh--hccCCHHHHHHHHHHHHhCCCH----HHHHHHHHHHHccCCCCCCccCHH
Q 018965           83 SAHRFLKRCVFA--GNLEACYTLGMIRF--YCLQNRSSGTSLMAKAAMKSHA----PALYSLAVIQFNGSGGGKNEKDLR  154 (348)
Q Consensus        83 ~A~~~~~kaA~~--G~~~A~~~Lg~~y~--~~~~d~~~A~~~~~~AA~~G~~----~A~~~Lg~~y~~G~g~~~~~~d~~  154 (348)
                      ....-|.+..+.  -+++++|+++..+.  ..+.|..+++.+++.-...+++    +..|.||+-|..       -.|+.
T Consensus        19 ~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yk-------lg~Y~   91 (126)
T 1nzn_A           19 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR-------LKEYE   91 (126)
T ss_dssp             HHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH-------TTCHH
T ss_pred             HHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH-------hhhHH
Confidence            445566666664  46899999999887  4556778899999999988755    588999988864       23899


Q ss_pred             HHHHHHHHHHh--CCCHHHHHHH
Q 018965          155 AGVALCARAAS--IGHVDAVREL  175 (348)
Q Consensus       155 ~A~~~~~kAA~--~G~~~A~~~L  175 (348)
                      +|.+++...-+  -+|.+|+--.
T Consensus        92 ~A~~~~~~lL~~eP~n~QA~~Lk  114 (126)
T 1nzn_A           92 KALKYVRGLLQTEPQNNQAKELE  114 (126)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHH
Confidence            99999988754  4666666443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	348
d2dj8a1	47	g.85.1.1 (A:8-54) Zinc finger MYND domain-containi	2e-08
d2jw6a1	38	g.85.1.1 (A:503-540) Zinc finger MYND domain-conta	2e-08
d2dana1	47	g.85.1.1 (A:8-54) Zinc finger MYND domain-containi	4e-08
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	2e-04
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	0.001
d1ouva_	265	a.118.18.1 (A:) Cysteine rich protein C (HcpC) {He	0.004
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	0.004

>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 2, MTG8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (114), Expect = 2e-08
 Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 8/55 (14%)

Query: 263 VSDLGNGLRLCSYSGCGRPETRVHEYRRCSVCGKVNYCSRACQAIDWKTRHKREC 317
           ++   +    C    CGR  +       CS C    YC   CQ  DW+ +H   C
Sbjct: 1   INQQEDSSESCWN--CGRKASE-----TCSGCNTARYCGSFCQHKDWE-KHHHIC 47

>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 2, MTG8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (113), Expect = 2e-08
 Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 278 CGRPETRVHEYRRCSVCGKVNYCSRACQAIDWKTRHKREC 317
           CGR          C+ C KVNYCS  CQ  DWK  H+  C
Sbjct: 5   CGREAMS-----ECTGCHKVNYCSTFCQRKDWK-DHQHIC 38

>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 10, ZMYND10
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (111), Expect = 4e-08
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 6/40 (15%)

Query: 278 CGRPETRVHEYRRCSVCGKVNYCSRACQAIDWKTRHKREC 317
           C    ++     RCS C    YC R CQ   W+ +H + C
Sbjct: 14  CSAEASK-----RCSRCQNEWYCCRECQVKHWE-KHGKTC 47

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (85), Expect = 2e-04
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 5/45 (11%)

Query: 20 FDALPDDLLECVLSKLISSAPSPSDFINVLLTCKRLNRVGLRPTV 64
          +D+LPD+LL  + S L        + + V   CKR  R+    ++
Sbjct: 1  WDSLPDELLLGIFSCL-----CLPELLKVSGVCKRWYRLASDESL 40

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.8 bits (82), Expect = 0.001
 Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 5/43 (11%)

Query: 16 KPDLFDALPDDLLECVLSKLISSAPSPSDFINVLLTCKRLNRV 58
          K DL  +LP ++   + + L        D IN L   +  N++
Sbjct: 2  KRDLITSLPFEISLKIFNYL-----QFEDIINSLGVSQNWNKI 39

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Length = 265

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

 Score = 36.4 bits (82), Expect = 0.004
 Identities = 12/59 (20%), Positives = 18/59 (30%), Gaps = 7/59 (11%)

Query: 132 ALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASIGHVDAVRELGHCLQDGYGVRQNIE 190
            L  L    +        EKD         +A  +        LG     G GV +N++
Sbjct: 4   ELVGLGAKSYK-------EKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLK 55

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (78), Expect = 0.004
 Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 5/49 (10%)

Query: 16 KPDLFDALPDDLLECVLSKLISSAPSPSDFINVLLTCKRLNRVGLRPTV 64
          + D    LP +L   VLS L      P D +    TC+    +     +
Sbjct: 15 QRDFISLLPKELALYVLSFL-----EPKDLLQAAQTCRYWRILAEDNLL 58

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	348
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	99.95
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.86
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	99.83
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.73
d2dana1	47	Zinc finger MYND domain-containing protein 10, ZMY	99.3
d2jw6a1	38	Zinc finger MYND domain-containing protein 2, MTG8	99.26
d2dj8a1	47	Zinc finger MYND domain-containing protein 2, MTG8	99.22
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.14
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.04
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.99
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.97
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	97.93
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.87
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	97.84
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.81
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.8
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	97.62
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.58
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.54
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.53
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	97.47
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.44
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	97.43
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	97.37
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	97.36
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	97.34
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.3
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	97.25
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	97.25
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.19
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.17
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.14
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	97.02
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	96.97
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	96.95
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	96.9
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	96.84
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	96.77
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	96.7
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	96.65
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	96.58
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	96.51
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	96.29
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.21
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	96.2
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	96.17
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	96.16
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	94.85
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	94.51
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	94.2
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	93.66
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	92.67
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	92.27
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	91.97
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	91.09
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	90.62
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	90.46
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	90.07
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	88.79
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	86.15
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	85.54

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=99.95  E-value=2.2e-27  Score=194.76  Aligned_cols=123  Identities=18%  Similarity=0.139  Sum_probs=119.2

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHccCCCCCCccCHHHHHHHH
Q 018965           81 SDSAHRFLKRCVFAGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGGKNEKDLRAGVALC  160 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~  160 (348)
                      .++|++||++||+.|++.|++.||..   .++|.++|++||++|+++|++.|++.||.+|.+|.+   +++|..+|++||
T Consensus         9 ~~~A~~~~~kaa~~g~~~a~~~l~~~---~~~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~---~~~d~~~A~~~~   82 (133)
T d1klxa_           9 LKKAIQYYVKACELNEMFGCLSLVSN---SQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKY---VKKDLRKAAQYY   82 (133)
T ss_dssp             HHHHHHHHHHHHHTTCTTHHHHHHTC---TTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSS---SCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChhhhhhhccc---cccCHHHHHHHHhhhhcccchhhhhhHHHhhhhccc---cchhhHHHHHHH
Confidence            78999999999999999999999865   568999999999999999999999999999999999   999999999999


Q ss_pred             HHHHhCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 018965          161 ARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFFQSVS  209 (348)
Q Consensus       161 ~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~~A~~  209 (348)
                      ++|++.|++.|+++||.+|.+|.||++|.++|++||++|+++|++.|+.
T Consensus        83 ~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~~A~~  131 (133)
T d1klxa_          83 SKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSEDACG  131 (133)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            9999999999999999999999999999999999999999999999986

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.86  E-value=3.5e-21  Score=173.24  Aligned_cols=127  Identities=14%  Similarity=0.180  Sum_probs=120.0

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHhhhhhh---hccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHccCCCCCCccCHHHHH
Q 018965           81 SDSAHRFLKRCVFAGNLEACYTLGMIRF---YCLQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGGKNEKDLRAGV  157 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G~~~A~~~Lg~~y~---~~~~d~~~A~~~~~~AA~~G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~  157 (348)
                      ...++.++.+..+.+++.+++.||.+|.   +...|...++.|+++|++.|++.|+++||.+|..|.|   +++|+++|+
T Consensus       126 ~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~---~~~d~~~A~  202 (265)
T d1ouva_         126 FKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEG---ATKNFKEAL  202 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS---SCCCHHHHH
T ss_pred             hHHHHHHhhhhhcccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcc---cccchhhhh
Confidence            6778888888888888888888888887   5778999999999999999999999999999999999   999999999


Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHh
Q 018965          158 ALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFFQSVSK  210 (348)
Q Consensus       158 ~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~~A~~~  210 (348)
                      .||++|+++|++.|+++||.+|..|.||++|.++|.+||++|+++|+..|...
T Consensus       203 ~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~A~~~  255 (265)
T d1ouva_         203 ARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDI  255 (265)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHH
T ss_pred             hhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999874

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=99.83  E-value=1.6e-20  Score=153.22  Aligned_cols=93  Identities=19%  Similarity=0.237  Sum_probs=89.7

Q ss_pred             cHHHHHHHHHHHHHCCCHHHHHHhhhhhh---hccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           80 WSDSAHRFLKRCVFAGNLEACYTLGMIRF---YCLQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~G~~~A~~~Lg~~y~---~~~~d~~~A~~~~~~AA~~G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      ..++|++||+++++.|+++|++.||.+|+   ++++|..+|++||++|++.|++.|++.||.+|..|.|   |++|..+|
T Consensus        38 ~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~Lg~~y~~G~g---v~~d~~~A  114 (133)
T d1klxa_          38 NKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKG---VVKNEKQA  114 (133)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSS---SCCCHHHH
T ss_pred             CHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccCcchHHHHHHHHHHcCCc---cCCCHHHH
Confidence            37899999999999999999999999998   6899999999999999999999999999999999999   99999999


Q ss_pred             HHHHHHHHhCCCHHHHHHH
Q 018965          157 VALCARAASIGHVDAVREL  175 (348)
Q Consensus       157 ~~~~~kAA~~G~~~A~~~L  175 (348)
                      ++||++|+++|+++|++.|
T Consensus       115 ~~~~~~Aa~~G~~~A~~~l  133 (133)
T d1klxa_         115 VKTFEKACRLGSEDACGIL  133 (133)
T ss_dssp             HHHHHHHHHTTCHHHHHHC
T ss_pred             HHHHHHHHHCCCHHHHHhC
Confidence            9999999999999999865

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.73  E-value=2.2e-16  Score=141.33  Aligned_cols=128  Identities=17%  Similarity=0.184  Sum_probs=122.1

Q ss_pred             cHHHHHHHHHHHHHCCCHHHHHHhhhhhh---hccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           80 WSDSAHRFLKRCVFAGNLEACYTLGMIRF---YCLQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~G~~~A~~~Lg~~y~---~~~~d~~~A~~~~~~AA~~G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      ..++|+.+|+++++.|.+.+++.||..+.   ....+...++.++.++.+.++..+++.||.+|..|.+   ...|...+
T Consensus        89 ~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~~~---~~~~~~~~  165 (265)
T d1ouva_          89 NTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRG---TPKDLKKA  165 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSS---SCCCHHHH
T ss_pred             hhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhccCCC---cccccccc
Confidence            47899999999999999999999998887   4677899999999999999999999999999999988   89999999


Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHh
Q 018965          157 VALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFFQSVSK  210 (348)
Q Consensus       157 ~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~~A~~~  210 (348)
                      +.|++++++.|++.|+++||.+|..|.|+++|+++|+.||++|+++|++.|+.+
T Consensus       166 ~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~  219 (265)
T d1ouva_         166 LASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFN  219 (265)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhcccCHHHHHH
Confidence            999999999999999999999999999999999999999999999999999986

>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 10, ZMYND10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=7.5e-13  Score=87.01  Aligned_cols=43  Identities=35%  Similarity=0.947  Sum_probs=36.4

Q ss_pred             CCccccccCCCCCCCCccccccccCCCCCceeecChHHHHHhchhhchhcC
Q 018965          267 GNGLRLCSYSGCGRPETRVHEYRRCSVCGKVNYCSRACQAIDWKTRHKREC  317 (348)
Q Consensus       267 ~~~~~~C~~~~C~~~~~~~~~l~~C~~C~~~~YCs~~CQ~~~W~~~Hk~~C  317 (348)
                      .+..+.|.+  |++...     ++|++|+.++|||++||+.||+. ||..|
T Consensus         5 ~p~~~~C~~--Cg~~~~-----~~Cs~C~~~~YCs~~CQ~~dW~~-Hk~~C   47 (47)
T d2dana1           5 APERPRCAY--CSAEAS-----KRCSRCQNEWYCCRECQVKHWEK-HGKTC   47 (47)
T ss_dssp             CCCCCCCSS--SCCCCC-----EECTTTSCSEESSHHHHHHTHHH-HTTTC
T ss_pred             CCCCCcCcC--CCChhh-----ccCCCCCCEeeCCHHHHHHHHHH-HhhhC
Confidence            345557986  877544     89999999999999999999997 99988

>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 2, MTG8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.5e-12  Score=81.75  Aligned_cols=37  Identities=51%  Similarity=1.180  Sum_probs=32.1

Q ss_pred             ccCCCCCCCCccccccccCCCCCceeecChHHHHHhchhhchhcC
Q 018965          273 CSYSGCGRPETRVHEYRRCSVCGKVNYCSRACQAIDWKTRHKREC  317 (348)
Q Consensus       273 C~~~~C~~~~~~~~~l~~C~~C~~~~YCs~~CQ~~~W~~~Hk~~C  317 (348)
                      |.+  |++.     .+++|++|+.++|||++||+.||+. ||.+|
T Consensus         2 C~~--C~~~-----~~~~C~~C~~~~YCs~~CQ~~~W~~-Hk~~C   38 (38)
T d2jw6a1           2 CVN--CGRE-----AMSECTGCHKVNYCSTFCQRKDWKD-HQHIC   38 (38)
T ss_dssp             CSS--SSSS-----CSEECTTTCSSEESSHHHHHHHTTT-GGGTT
T ss_pred             ccc--cCcc-----ccccCCCCCCEeeCCHHHHHHHHHH-HhhhC
Confidence            664  7654     3589999999999999999999997 99987

>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 2, MTG8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=3.6e-12  Score=83.82  Aligned_cols=42  Identities=36%  Similarity=0.901  Sum_probs=35.7

Q ss_pred             CccccccCCCCCCCCccccccccCCCCCceeecChHHHHHhchhhchhcC
Q 018965          268 NGLRLCSYSGCGRPETRVHEYRRCSVCGKVNYCSRACQAIDWKTRHKREC  317 (348)
Q Consensus       268 ~~~~~C~~~~C~~~~~~~~~l~~C~~C~~~~YCs~~CQ~~~W~~~Hk~~C  317 (348)
                      .....|.+  |+++.     +++|++|+.++|||++||+.||+. ||.+|
T Consensus         6 ~~~~~C~~--C~~~~-----~~~C~~C~~~~YCs~~CQ~~dW~~-Hk~~C   47 (47)
T d2dj8a1           6 DSSESCWN--CGRKA-----SETCSGCNTARYCGSFCQHKDWEK-HHHIC   47 (47)
T ss_dssp             CCSCCCSS--SCSCC-----CEECTTTSCCEESSHHHHHHTHHH-HTTTS
T ss_pred             cCCCcCCC--CCccc-----cccCCCCCCeeeCCHHHHHHHHHH-HhhhC
Confidence            44567886  77654     488999999999999999999997 99988

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.14  E-value=1.2e-05  Score=66.47  Aligned_cols=95  Identities=17%  Similarity=0.141  Sum_probs=72.0

Q ss_pred             CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHH
Q 018965           95 GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVD  170 (348)
Q Consensus        95 G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~  170 (348)
                      ++++.....|..|+ ..+++++|+.+|++|.+.  .++.+.+++|.+|.. .|      ++++|+.+|++|.+.  .++.
T Consensus         2 ~~a~~l~~~Gn~~~-~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~-~~------~~~~Ai~~~~~al~l~p~~~~   73 (201)
T d2c2la1           2 PSAQELKEQGNRLF-VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQ------QPEQALADCRRALELDGQSVK   73 (201)
T ss_dssp             CCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHTTSCTTCHH
T ss_pred             hhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhh-hh------hhhhhhHHHHHHHHhCCCcHH
Confidence            45666777787777 677888888888888765  578888888888853 33      778888888888764  5788


Q ss_pred             HHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965          171 AVRELGHCLQDGYGVRQNIEKGRRLLIEANA  201 (348)
Q Consensus       171 A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~  201 (348)
                      +.++||.+|..    -.++++|+.+|++|.+
T Consensus        74 a~~~lg~~~~~----l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          74 AHFFLGQCQLE----MESYDEAIANLQRAYS  100 (201)
T ss_dssp             HHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH----CCCHHHHHHHHHHHHH
Confidence            88888888765    4578888888888765

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=4e-05  Score=64.13  Aligned_cols=110  Identities=11%  Similarity=0.170  Sum_probs=92.4

Q ss_pred             cHHHHHHHHHHHHHCCCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHHH
Q 018965           80 WSDSAHRFLKRCVFAGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAGV  157 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~  157 (348)
                      ..++|+..|.+. ..-++.+.|+||.+|+ ..++.++|+.+|++|.+.  .++.+.+++|.+|.. .|      ++++|+
T Consensus        20 d~~~Al~~~~~i-~~~~~~~~~nlG~~~~-~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~-~g------~~~~A~   90 (192)
T d1hh8a_          20 DWKGALDAFSAV-QDPHSRICFNIGCMYT-ILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ-TE------KYDLAI   90 (192)
T ss_dssp             CHHHHHHHHHTS-SSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHHH
T ss_pred             CHHHHHHHHHhc-CCCCHHHHHHHHHHHH-HcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHh-hc------cHHHHH
Confidence            478899999875 5568999999999998 678999999999999976  489999999999953 33      789999


Q ss_pred             HHHHHHHhC--CC----------------HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          158 ALCARAASI--GH----------------VDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       158 ~~~~kAA~~--G~----------------~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                      ..|++|...  ++                .+..+++|.+|..    ..+..+|...|.+|...
T Consensus        91 ~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~----~~~~~~A~~~l~~A~~~  149 (192)
T d1hh8a_          91 KDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK----KEEWKKAEEQLALATSM  149 (192)
T ss_dssp             HHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhc
Confidence            999999753  11                4678999999886    56899999999998764

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=5.7e-05  Score=66.81  Aligned_cols=109  Identities=14%  Similarity=0.035  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHHHC----CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHH
Q 018965           81 SDSAHRFLKRCVFA----GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLR  154 (348)
Q Consensus        81 ~~~A~~~~~kaA~~----G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~  154 (348)
                      ..++...|+++.+.    -++.+.+.+|.++. ..++.++|+.+|+++...  .++.+.+.||.+|.. .|      +++
T Consensus       152 ~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g------~~~  223 (323)
T d1fcha_         152 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN-LSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN-GN------QSE  223 (323)
T ss_dssp             HHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHH
T ss_pred             HHHHHHHHHHHHHHhhcccccccchhhHHHHH-HHHHHhhhhcccccccccccccccchhhhhhcccc-cc------cch
Confidence            56788899988864    46788999999988 678999999999999765  589999999999964 33      789


Q ss_pred             HHHHHHHHHHh--CCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965          155 AGVALCARAAS--IGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANA  201 (348)
Q Consensus       155 ~A~~~~~kAA~--~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~  201 (348)
                      +|+.+|+++.+  .+++.+.+.||.+|..    ..++++|+..|++|.+
T Consensus       224 ~A~~~~~~al~~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~  268 (323)
T d1fcha_         224 EAVAAYRRALELQPGYIRSRYNLGISCIN----LGAHREAVEHFLEALN  268 (323)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhhccHHHHHHHHHHHHH----CCCHHHHHHHHHHHHH
Confidence            99999999986  4789999999999986    4589999999999976

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=3.3e-05  Score=60.12  Aligned_cols=93  Identities=9%  Similarity=-0.033  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhh--hccCCHHHHHHHHHHHHhCCC----HHHHHHHHHHHHccCCCCCCccC
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRF--YCLQNRSSGTSLMAKAAMKSH----APALYSLAVIQFNGSGGGKNEKD  152 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~--~~~~d~~~A~~~~~~AA~~G~----~~A~~~Lg~~y~~G~g~~~~~~d  152 (348)
                      .++|.+.|+++...  .+++++|++|.+++  ....|..+|+..|+++.....    +.+.|+||.+|.. .|      |
T Consensus        15 l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~-~g------~   87 (122)
T d1nzna_          15 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR-LK------E   87 (122)
T ss_dssp             HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH-TT------C
T ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH-Hh------h
Confidence            57888899998874  68899999998876  345577889999999887653    3488899999863 34      7


Q ss_pred             HHHHHHHHHHHHhC--CCHHHHHHHHHHHh
Q 018965          153 LRAGVALCARAASI--GHVDAVRELGHCLQ  180 (348)
Q Consensus       153 ~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~  180 (348)
                      +++|..+|+++-+.  ++..|+..++.+..
T Consensus        88 ~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~  117 (122)
T d1nzna_          88 YEKALKYVRGLLQTEPQNNQAKELERLIDK  117 (122)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence            89999999998764  67888877776653

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=6.7e-05  Score=66.63  Aligned_cols=118  Identities=19%  Similarity=0.135  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .++|+.+|+++.+.  .++++.+.+|.+|. ..++..+|+.+|+++....  ++...+.+|.+|.. .      .++++|
T Consensus       253 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~------~~~~~A  324 (388)
T d1w3ba_         253 IDLAIDTYRRAIELQPHFPDAYCNLANALK-EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE-Q------GNIEEA  324 (388)
T ss_dssp             HHHHHHHHHHHHHTCSSCHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-T------TCHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHH-C------CCHHHH
Confidence            67888888888765  57888888888887 5677888888888877654  56778888888753 2      378889


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC--CHHHHHh
Q 018965          157 VALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE--FFQSVSK  210 (348)
Q Consensus       157 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G--~~~A~~~  210 (348)
                      +.+|+++.+.  .++.+.++||.+|..    ..+.++|+.+|++|.+..  ++.+..+
T Consensus       325 ~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~l~P~~~~a~~~  378 (388)
T d1w3ba_         325 VRLYRKALEVFPEFAAAHSNLASVLQQ----QGKLQEALMHYKEAIRISPTFADAYSN  378 (388)
T ss_dssp             HHHHHHHTTSCTTCHHHHHHHHHHHHT----TTCCHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            9999998764  578889999988875    457889999999987653  4555443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=4.4e-05  Score=59.37  Aligned_cols=87  Identities=14%  Similarity=0.057  Sum_probs=72.0

Q ss_pred             ccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhCCC----HHHHHHHHHHHhccC
Q 018965          110 CLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASIGH----VDAVRELGHCLQDGY  183 (348)
Q Consensus       110 ~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~G~----~~A~~~Lg~~y~~G~  183 (348)
                      ...|.++|.+.|++|...  .++.++|+||.++..- +   ...|..+|+..|+++.....    +++.|+||.+|..  
T Consensus        11 ~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s-~---~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~--   84 (122)
T d1nzna_          11 SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRT-R---YNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR--   84 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTS-S---SHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH--
T ss_pred             CHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh-c---chHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH--
Confidence            456899999999999985  5889999999999642 2   35688999999999988653    3489999999885  


Q ss_pred             CCCCCHHHHHHHHHHHHhcCC
Q 018965          184 GVRQNIEKGRRLLIEANAREF  204 (348)
Q Consensus       184 Gv~~d~~~A~~w~~~Aa~~G~  204 (348)
                        ..|+++|+.+|++|.+..-
T Consensus        85 --~g~~~~A~~~~~~aL~~~P  103 (122)
T d1nzna_          85 --LKEYEKALKYVRGLLQTEP  103 (122)
T ss_dssp             --TTCHHHHHHHHHHHHHHCT
T ss_pred             --HhhhHHHHHHHHHHHHhCc
Confidence              4599999999999987543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=97.84  E-value=7.2e-05  Score=63.92  Aligned_cols=95  Identities=13%  Similarity=0.057  Sum_probs=64.4

Q ss_pred             HHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHHHH
Q 018965           97 LEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVDAV  172 (348)
Q Consensus        97 ~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~  172 (348)
                      +++.|.+|.+|. ..++.++|+..|++|.+.  +++.+.++||.+|.. .|      ++++|+..|++|.+.  .++.+.
T Consensus        37 a~~~~~~G~~y~-~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~-~g------~~~~A~~~~~~al~~~p~~~~a~  108 (259)
T d1xnfa_          37 AQLLYERGVLYD-SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ-AG------NFDAAYEAFDSVLELDPTYNYAH  108 (259)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTCTHHH
T ss_pred             HHHHHHHHHHHH-HCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHH-HH------HHHHhhhhhhHHHHHHhhhhhhH
Confidence            356677777776 456777777777777754  477777777777753 22      677777777777653  466777


Q ss_pred             HHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965          173 RELGHCLQDGYGVRQNIEKGRRLLIEANARE  203 (348)
Q Consensus       173 ~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G  203 (348)
                      +++|.+|..    ..+..+|...|++|.+..
T Consensus       109 ~~lg~~~~~----~g~~~~A~~~~~~al~~~  135 (259)
T d1xnfa_         109 LNRGIALYY----GGRDKLAQDDLLAFYQDD  135 (259)
T ss_dssp             HHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHH----HhhHHHHHHHHHHHHhhc
Confidence            777777654    346677777777776554

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=3.3e-05  Score=57.08  Aligned_cols=76  Identities=18%  Similarity=0.225  Sum_probs=62.5

Q ss_pred             CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC---------CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC
Q 018965           96 NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS---------HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI  166 (348)
Q Consensus        96 ~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G---------~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~  166 (348)
                      +++.+|.||..++ ..+|+.+|+.||++|.+..         .+++.++||.+|.. .|      ++++|+.+|++|.+.
T Consensus         4 saddc~~lG~~~~-~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~-~g------~~~~A~~~y~~aL~l   75 (95)
T d1tjca_           4 TAEDSFELGKVAY-TEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ-QG------DLDKALLLTKKLLEL   75 (95)
T ss_dssp             CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHh-cC------ChHHHHHHHHHHHHh
Confidence            4678899999988 6789999999999998642         25788999999964 33      799999999999875


Q ss_pred             --CCHHHHHHHHHHH
Q 018965          167 --GHVDAVRELGHCL  179 (348)
Q Consensus       167 --G~~~A~~~Lg~~y  179 (348)
                        .++.|.++|+.+.
T Consensus        76 ~P~~~~a~~Nl~~~~   90 (95)
T d1tjca_          76 DPEHQRANGNLKYFE   90 (95)
T ss_dssp             CTTCHHHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHH
Confidence              6899999997754

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.80  E-value=5e-05  Score=57.75  Aligned_cols=88  Identities=14%  Similarity=0.063  Sum_probs=63.9

Q ss_pred             HHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHH
Q 018965          100 CYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVDAVREL  175 (348)
Q Consensus       100 ~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~~~L  175 (348)
                      .|.+|..++ ..++..+|+..|+++.+..  ++.+++.||.+|.. .|      ++.+|+.+|++|.+.  .++.+.+.|
T Consensus        19 ~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~~------~~~~A~~~~~~al~~~p~~~~a~~~l   90 (112)
T d1hxia_          19 PMEEGLSML-KLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE-NE------KDGLAIIALNHARMLDPKDIAVHAAL   90 (112)
T ss_dssp             HHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHH-HHhhhHHHHHHHhhhcccccccchhhhhhhhhhhh-hh------hHHHhhcccccccccccccccchHHH
Confidence            356676666 4677888888888877665  67888888888743 23      678888888887764  577888888


Q ss_pred             HHHHhccCCCCCCHHHHHHHHHHH
Q 018965          176 GHCLQDGYGVRQNIEKGRRLLIEA  199 (348)
Q Consensus       176 g~~y~~G~Gv~~d~~~A~~w~~~A  199 (348)
                      |.+|..    ..|.++|+..|++.
T Consensus        91 a~~y~~----~g~~~~A~~~l~~~  110 (112)
T d1hxia_          91 AVSHTN----EHNANAALASLRAW  110 (112)
T ss_dssp             HHHHHH----HHHHHHHHHHHHHH
T ss_pred             HHHHHH----CCCHHHHHHHHHHH
Confidence            887765    45777888777765

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=0.00034  Score=55.92  Aligned_cols=90  Identities=13%  Similarity=0.105  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      +++|+.+|+++.+.  .++.+.+++|.+|+ .-++.++|+..|++|.+.  .++.|.+.+|.+|.. .|      ++.+|
T Consensus        26 y~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~-~g------~~~eA   97 (159)
T d1a17a_          26 YENAIKFYSQAIELNPSNAIYYGNRSLAYL-RTECYGYALGDATRAIELDKKYIKGYYRRAASNMA-LG------KFRAA   97 (159)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHH
T ss_pred             HHHHHHHhhhccccchhhhhhhhhhHHHHH-hccccchHHHHHHHHHHHcccchHHHHHHHHHHHH-cC------CHHHH
Confidence            45556666555543  35555556665555 334555566666655432  345555566655542 22      45556


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHH
Q 018965          157 VALCARAASI--GHVDAVRELGHC  178 (348)
Q Consensus       157 ~~~~~kAA~~--G~~~A~~~Lg~~  178 (348)
                      +.+|+++...  .++.++..++.+
T Consensus        98 ~~~~~~a~~~~p~~~~~~~~l~~~  121 (159)
T d1a17a_          98 LRDYETVVKVKPHDKDAKMKYQEC  121 (159)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHH
Confidence            6666665543  345555444443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=0.00042  Score=52.71  Aligned_cols=90  Identities=7%  Similarity=-0.137  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .++|+..|+++.+.  .++.+.+.+|.+|. ..++..+|+..|++|.+.  +++.+.+++|.+|.. .      .++++|
T Consensus        19 ~~eAi~~~~~al~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~-~------~~~~~A   90 (117)
T d1elwa_          19 IDDALQCYSEAIKLDPHNHVLYSNRSAAYA-KKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF-L------NRFEEA   90 (117)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-T------TCHHHH
T ss_pred             HHHHHHHHHHHHhcCCcchhhhhccccccc-ccccccccchhhhhHHHhccchhhHHHHHHHHHHH-c------cCHHHH
Confidence            67788888887553  57777888888877 567777888888887764  467788888887753 2      267788


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHH
Q 018965          157 VALCARAASI--GHVDAVRELGHC  178 (348)
Q Consensus       157 ~~~~~kAA~~--G~~~A~~~Lg~~  178 (348)
                      +..|++|.+.  .++.+...|+.+
T Consensus        91 ~~~~~~a~~~~p~~~~~~~~l~~l  114 (117)
T d1elwa_          91 KRTYEEGLKHEANNPQLKEGLQNM  114 (117)
T ss_dssp             HHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHH
Confidence            8888888765  466666666654

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=0.00051  Score=52.18  Aligned_cols=91  Identities=10%  Similarity=0.009  Sum_probs=76.9

Q ss_pred             HHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHh--CCCHHHHHHHH
Q 018965          101 YTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAAS--IGHVDAVRELG  176 (348)
Q Consensus       101 ~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~--~G~~~A~~~Lg  176 (348)
                      ...|..++ ..+++++|+..|++|.+.  .++.+.+++|.+|..       ..++.+|+..|.++.+  ..++.+.+++|
T Consensus         7 ~~~g~~~~-~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~-------~~~~~~A~~~~~~al~~~p~~~~~~~~~g   78 (117)
T d1elwa_           7 KEKGNKAL-SVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK-------KGDYQKAYEDGCKTVDLKPDWGKGYSRKA   78 (117)
T ss_dssp             HHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHH-HcCCHHHHHHHHHHHHhcCCcchhhhhcccccccc-------cccccccchhhhhHHHhccchhhHHHHHH
Confidence            44566666 678999999999999655  588999999999975       2378999999999987  47899999999


Q ss_pred             HHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965          177 HCLQDGYGVRQNIEKGRRLLIEANARE  203 (348)
Q Consensus       177 ~~y~~G~Gv~~d~~~A~~w~~~Aa~~G  203 (348)
                      .+|..    ..++++|+..|++|.+..
T Consensus        79 ~~~~~----~~~~~~A~~~~~~a~~~~  101 (117)
T d1elwa_          79 AALEF----LNRFEEAKRTYEEGLKHE  101 (117)
T ss_dssp             HHHHH----TTCHHHHHHHHHHHHTTC
T ss_pred             HHHHH----ccCHHHHHHHHHHHHHhC
Confidence            99976    559999999999998654

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.53  E-value=0.00019  Score=58.84  Aligned_cols=78  Identities=14%  Similarity=-0.003  Sum_probs=69.2

Q ss_pred             cHHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHH
Q 018965           80 WSDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRA  155 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~  155 (348)
                      ..++|+.+|++|.+.  .++.+.+++|.+|. .-+++++|+.+|++|.+.  .++.|.++||.+|.. .|      ++++
T Consensus        19 ~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~-~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~-l~------~~~~   90 (201)
T d2c2la1          19 KYPEAAACYGRAITRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE-ME------SYDE   90 (201)
T ss_dssp             CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH-TT------CHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHhHHHHHh-hhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHH-CC------CHHH
Confidence            389999999999876  79999999999998 678999999999999875  589999999999964 33      7999


Q ss_pred             HHHHHHHHHh
Q 018965          156 GVALCARAAS  165 (348)
Q Consensus       156 A~~~~~kAA~  165 (348)
                      |+.+|++|.+
T Consensus        91 A~~~~~~al~  100 (201)
T d2c2la1          91 AIANLQRAYS  100 (201)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999875

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=0.00037  Score=57.96  Aligned_cols=89  Identities=9%  Similarity=0.058  Sum_probs=74.7

Q ss_pred             HHHhhhhhhhccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHH
Q 018965          100 CYTLGMIRFYCLQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVDAVRELGH  177 (348)
Q Consensus       100 ~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~  177 (348)
                      .++.|..+. ..+|+++|++.|.+. ..-++.+.|+||.+|.. .|      ++++|+++|.+|.+.  .++.+.+++|.
T Consensus         8 l~~~g~~~~-~~~d~~~Al~~~~~i-~~~~~~~~~nlG~~~~~-~g------~~~~A~~~~~kAl~ldp~~~~a~~~~g~   78 (192)
T d1hh8a_           8 LWNEGVLAA-DKKDWKGALDAFSAV-QDPHSRICFNIGCMYTI-LK------NMTEAEKAFTRSINRDKHLAVAYFQRGM   78 (192)
T ss_dssp             HHHHHHHHH-HTTCHHHHHHHHHTS-SSCCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHH-HCCCHHHHHHHHHhc-CCCCHHHHHHHHHHHHH-cC------CchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence            345566665 788999999999985 45689999999999963 34      899999999999875  68999999999


Q ss_pred             HHhccCCCCCCHHHHHHHHHHHHh
Q 018965          178 CLQDGYGVRQNIEKGRRLLIEANA  201 (348)
Q Consensus       178 ~y~~G~Gv~~d~~~A~~w~~~Aa~  201 (348)
                      +|..    -.++++|+..|++|..
T Consensus        79 ~~~~----~g~~~~A~~~~~kAl~   98 (192)
T d1hh8a_          79 LYYQ----TEKYDLAIKDLKEALI   98 (192)
T ss_dssp             HHHH----TTCHHHHHHHHHHHHH
T ss_pred             HHHh----hccHHHHHHHHHHHHH
Confidence            9865    4589999999999975

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=0.00046  Score=53.35  Aligned_cols=92  Identities=14%  Similarity=0.170  Sum_probs=70.5

Q ss_pred             HHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCH-----
Q 018965           99 ACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHV-----  169 (348)
Q Consensus        99 A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~-----  169 (348)
                      +.-.+|..|+ ..+++++|+..|++|.+..  ++.+.+++|.+|..       ..++.+|+.+|++|.+.  .+.     
T Consensus         6 ~~k~~G~~~~-~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~-------~~~~~~A~~~~~~al~l~~~~~~~~~~   77 (128)
T d1elra_           6 KEKELGNDAY-KKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE-------KGDYNKCRELCEKAIEVGRENREDYRQ   77 (128)
T ss_dssp             HHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHH-------cCchHHHHHHHHHHHHhCcccHHHHHH
Confidence            4557888877 6789999999999998775  68899999999963       23789999999998763  222     


Q ss_pred             --HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          170 --DAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       170 --~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                        .+.+.+|..+..    ..++.+|+.+|+++...
T Consensus        78 ~a~~~~~lg~~~~~----~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          78 IAKAYARIGNSYFK----EEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhc
Confidence              355566666654    67899999999998654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=0.00026  Score=63.55  Aligned_cols=115  Identities=8%  Similarity=-0.023  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .++|+.++.++.+.  .+..+.+.+|.++. .-++.++|+++|.+|.+..  +..+.+++|.+|..-       .++++|
T Consensus        94 ~~eal~~~~~al~~~p~~~~a~~~~~~~~~-~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~-------~~~~~A  165 (315)
T d2h6fa1          94 LHEEMNYITAIIEEQPKNYQVWHHRRVLVE-WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEF-------KLWDNE  165 (315)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-------TCCTTH
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHhHHHH-hhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHH-------HhhHHH
Confidence            56677777776553  46677777777665 3455666777777776653  666777777666532       234567


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHhccC--CCCCCHHHHHHHHHHHHhcC
Q 018965          157 VALCARAASI--GHVDAVRELGHCLQDGY--GVRQNIEKGRRLLIEANARE  203 (348)
Q Consensus       157 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~--Gv~~d~~~A~~w~~~Aa~~G  203 (348)
                      +.+|.++.+.  .+..|.+++|.++....  .-..+..+|+..|.+|.+..
T Consensus       166 l~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~  216 (315)
T d2h6fa1         166 LQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV  216 (315)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhC
Confidence            7777777664  46667777776665432  23344566777777776664

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.37  E-value=0.00072  Score=59.41  Aligned_cols=112  Identities=10%  Similarity=-0.056  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHHC----CCH----HHHHHhhhhhhhccCCHHHHHHHHHHHHh----CCC----HHHHHHHHHHHHccC
Q 018965           81 SDSAHRFLKRCVFA----GNL----EACYTLGMIRFYCLQNRSSGTSLMAKAAM----KSH----APALYSLAVIQFNGS  144 (348)
Q Consensus        81 ~~~A~~~~~kaA~~----G~~----~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~----~G~----~~A~~~Lg~~y~~G~  144 (348)
                      .++|+..|.+|++.    +++    .++.++|.+|. ...++.+|+..|++|.+    .|+    ..+..+||.+|..-.
T Consensus        53 ~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~  131 (290)
T d1qqea_          53 LNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFK-SGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDL  131 (290)
T ss_dssp             THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-HhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHH
Confidence            57888899998874    443    57888899987 56789999999999886    344    467788898887644


Q ss_pred             CCCCCccCHHHHHHHHHHHHh----CCC----HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965          145 GGGKNEKDLRAGVALCARAAS----IGH----VDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE  203 (348)
Q Consensus       145 g~~~~~~d~~~A~~~~~kAA~----~G~----~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G  203 (348)
                      |      |+++|+++|++|.+    .++    ..++.++|.+|..    ..++.+|+.+|+++...-
T Consensus       132 ~------~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~----~g~y~~A~~~~~~~~~~~  188 (290)
T d1qqea_         132 H------DYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL----DGQYIEASDIYSKLIKSS  188 (290)
T ss_dssp             C------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTT
T ss_pred             H------HHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHH----cChHHHHHHHHHHHHHhC
Confidence            5      89999999999986    343    3457788888865    459999999999988753

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=0.00092  Score=53.26  Aligned_cols=99  Identities=8%  Similarity=-0.104  Sum_probs=81.5

Q ss_pred             HHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHh--CCCHHHHHHH
Q 018965          100 CYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAAS--IGHVDAVREL  175 (348)
Q Consensus       100 ~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~--~G~~~A~~~L  175 (348)
                      ....|..|+ ..+++++|+.+|++|.+..  ++.+.++||.+|..- |      ++.+|+..|++|.+  -.++.|.+.+
T Consensus        13 l~~~gn~~~-~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-~------~~~~A~~~~~kal~~~p~~~~a~~~~   84 (159)
T d1a17a_          13 LKTQANDYF-KAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT-E------CYGYALGDATRAIELDKKYIKGYYRR   84 (159)
T ss_dssp             HHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT-T------CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHH-HcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhc-c------ccchHHHHHHHHHHHcccchHHHHHH
Confidence            344566666 6889999999999998764  889999999999763 3      78999999999976  4789999999


Q ss_pred             HHHHhccCCCCCCHHHHHHHHHHHHhcC--CHHHHHh
Q 018965          176 GHCLQDGYGVRQNIEKGRRLLIEANARE--FFQSVSK  210 (348)
Q Consensus       176 g~~y~~G~Gv~~d~~~A~~w~~~Aa~~G--~~~A~~~  210 (348)
                      |.+|..    -.|+.+|..+|++|....  ++.++..
T Consensus        85 g~~~~~----~g~~~eA~~~~~~a~~~~p~~~~~~~~  117 (159)
T d1a17a_          85 AASNMA----LGKFRAALRDYETVVKVKPHDKDAKMK  117 (159)
T ss_dssp             HHHHHH----TTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             HHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            999875    459999999999999874  5565543

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=0.0013  Score=57.81  Aligned_cols=111  Identities=17%  Similarity=0.134  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .++|..+++++.+.  .++++.+.+|.++. ..++.++|+..|+++.+.  .++...+.+|.+|.. .|      ++++|
T Consensus       185 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~------~~~~A  256 (388)
T d1w3ba_         185 IWLAIHHFEKAVTLDPNFLDAYINLGNVLK-EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE-QG------LIDLA  256 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT------CHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHhhhhh-ccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHH-CC------CHHHH
Confidence            56677777776654  56777777777766 455666777777766654  355666677777653 22      56777


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965          157 VALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE  203 (348)
Q Consensus       157 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G  203 (348)
                      +.+|++|.+.  .++.+.+.||.+|..    ..+..+|+.+|+++....
T Consensus       257 ~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~  301 (388)
T d1w3ba_         257 IDTYRRAIELQPHFPDAYCNLANALKE----KGSVAEAEDCYNTALRLC  301 (388)
T ss_dssp             HHHHHHHHHTCSSCHHHHHHHHHHHHH----HSCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHhhhccC
Confidence            7777777654  466777777776654    346666777766665543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.30  E-value=0.00051  Score=51.79  Aligned_cols=76  Identities=18%  Similarity=0.069  Sum_probs=66.3

Q ss_pred             cHHHHHHHHHHHHHCC--CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHH
Q 018965           80 WSDSAHRFLKRCVFAG--NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRA  155 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~G--~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~  155 (348)
                      ..++|...|+++.+..  ++++++.||.+|. ...+..+|+.+|++|.+..  ++.+.+.||.+|..       ..|..+
T Consensus        31 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~-------~g~~~~  102 (112)
T d1hxia_          31 NLAEAALAFEAVCQKEPEREEAWRSLGLTQA-ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN-------EHNANA  102 (112)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-------HHHHHH
T ss_pred             hhHHHHHHHhhhcccccccchhhhhhhhhhh-hhhhHHHhhcccccccccccccccchHHHHHHHHH-------CCCHHH
Confidence            3789999999988864  8999999999998 6789999999999998764  79999999999963       348899


Q ss_pred             HHHHHHHH
Q 018965          156 GVALCARA  163 (348)
Q Consensus       156 A~~~~~kA  163 (348)
                      |++.|++.
T Consensus       103 A~~~l~~~  110 (112)
T d1hxia_         103 ALASLRAW  110 (112)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999885

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=7.2e-05  Score=46.61  Aligned_cols=39  Identities=33%  Similarity=0.568  Sum_probs=34.5

Q ss_pred             CCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHhHHHHhccCCch
Q 018965           20 FDALPDDLLECVLSKLISSAPSPSDFINVLLTCKRLNRVGLRPT   63 (348)
Q Consensus        20 ~~~l~~d~l~~il~~~a~~~~s~~d~~~~~l~~k~~~~~~~~~~   63 (348)
                      |+.||+|++..||..+     ++.|+.++..+||.|+++..++.
T Consensus         1 f~~LP~eil~~If~~L-----~~~dl~~~~~Vcr~w~~l~~~~~   39 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCL-----CLPELLKVSGVCKRWYRLASDES   39 (41)
T ss_dssp             CCSSCHHHHHHHHTTS-----CGGGHHHHHTTCHHHHHHHTCGG
T ss_pred             CCcCCHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHhCCcc
Confidence            7899999999999987     45699999999999999987654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.0012  Score=58.88  Aligned_cols=112  Identities=7%  Similarity=-0.023  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .++|+..+.+|.+.  .|..|.++.|.++....+|.++|+.+|+++.+.  .+..+.+.+|.++.. .|      ++++|
T Consensus        59 ~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~-l~------~~~eA  131 (315)
T d2h6fa1          59 SERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW-LR------DPSQE  131 (315)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HT------CCTTH
T ss_pred             hHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHh-hc------cHHHH
Confidence            46788888888775  477888888888764566788888888887655  478888888888754 23      55778


Q ss_pred             HHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965          157 VALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE  203 (348)
Q Consensus       157 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G  203 (348)
                      +.+|.+|.+.  .+..+.+++|.+|..    -.+.++|+.+|.+|.+..
T Consensus       132 l~~~~kal~~dp~n~~a~~~~~~~~~~----~~~~~~Al~~~~~al~~~  176 (315)
T d2h6fa1         132 LEFIADILNQDAKNYHAWQHRQWVIQE----FKLWDNELQYVDQLLKED  176 (315)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHH----HTCCTTHHHHHHHHHHHC
T ss_pred             HHHHhhhhhhhhcchHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHC
Confidence            8888888774  578888888887765    245667888888887763

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00023  Score=68.18  Aligned_cols=104  Identities=12%  Similarity=-0.002  Sum_probs=58.6

Q ss_pred             CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHHHH
Q 018965           95 GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVDAV  172 (348)
Q Consensus        95 G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~  172 (348)
                      .+..+.+++|..+. ...+...|+..++++.......++++||.++..       ..++++|..||++|.+.  .+..++
T Consensus       118 ~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~-------~~~~~~A~~~y~~A~~l~P~~~~~~  189 (497)
T d1ya0a1         118 PCRVKSSQLGIISN-KQTHTSAIVKPQSSSCSYICQHCLVHLGDIARY-------RNQTSQAESYYRHAAQLVPSNGQPY  189 (497)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTBSHHH
T ss_pred             hhHHHHHHhHHHHH-hCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-------cccHHHHHHHHHHHHHHCCCchHHH
Confidence            56667778887776 556777788888888777667788888888764       22678888888888875  577888


Q ss_pred             HHHHHHHhccCCCCCCHHHHHHHHHHHHhc--CCHHHHHh
Q 018965          173 RELGHCLQDGYGVRQNIEKGRRLLIEANAR--EFFQSVSK  210 (348)
Q Consensus       173 ~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~--G~~~A~~~  210 (348)
                      ++||.+|..    ..|..+|+.+|.+|..-  .++.|..+
T Consensus       190 ~~Lg~~~~~----~~~~~~A~~~y~ral~~~~~~~~a~~n  225 (497)
T d1ya0a1         190 NQLAILASS----KGDHLTTIFYYCRSIAVKFPFPAASTN  225 (497)
T ss_dssp             HHHHHHHHH----TTCHHHHHHHHHHHHSSSBCCHHHHHH
T ss_pred             HHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCHHHHHH
Confidence            888888865    45888888888888764  44455554

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.17  E-value=0.0017  Score=51.34  Aligned_cols=99  Identities=6%  Similarity=0.003  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHH--CCCHHHHHHhhhhhh--h-------ccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcc-C--
Q 018965           81 SDSAHRFLKRCVF--AGNLEACYTLGMIRF--Y-------CLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNG-S--  144 (348)
Q Consensus        81 ~~~A~~~~~kaA~--~G~~~A~~~Lg~~y~--~-------~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G-~--  144 (348)
                      .++|...|++|.+  -.|+++.+++|.++.  +       .....++|+..|++|.+.  .++.++++||.+|..- .  
T Consensus        13 fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~   92 (145)
T d1zu2a1          13 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLT   92 (145)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccch
Confidence            6799999999966  479999999999986  1       123467899999999876  5899999999999642 1  


Q ss_pred             CC-CCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Q 018965          145 GG-GKNEKDLRAGVALCARAASI--GHVDAVRELGHCL  179 (348)
Q Consensus       145 g~-~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y  179 (348)
                      +. .....++.+|.++|++|.+.  .+..+...|+...
T Consensus        93 ~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~  130 (145)
T d1zu2a1          93 PDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA  130 (145)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH
Confidence            10 00124578899999999864  5777777777664

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.015  Score=50.42  Aligned_cols=86  Identities=17%  Similarity=0.086  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHhC----CCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCC
Q 018965          114 RSSGTSLMAKAAMK----SHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQ  187 (348)
Q Consensus       114 ~~~A~~~~~~AA~~----G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~  187 (348)
                      ..+++..|.++.+.    -++.+.+.+|.++.. .|      ++++|+.+|+++...  .++.+.+.||.+|..    ..
T Consensus       152 ~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~-~~------~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g  220 (323)
T d1fcha_         152 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL-SG------EYDKAVDCFTAALSVRPNDYLLWNKLGATLAN----GN  220 (323)
T ss_dssp             HHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TT
T ss_pred             HHHHHHHHHHHHHHhhcccccccchhhHHHHHH-HH------HHhhhhcccccccccccccccchhhhhhcccc----cc
Confidence            44566666666653    356778888888864 23      789999999999764  689999999998876    56


Q ss_pred             CHHHHHHHHHHHHhc--CCHHHHHh
Q 018965          188 NIEKGRRLLIEANAR--EFFQSVSK  210 (348)
Q Consensus       188 d~~~A~~w~~~Aa~~--G~~~A~~~  210 (348)
                      +.++|+.+|++|.+.  +++.+...
T Consensus       221 ~~~~A~~~~~~al~~~p~~~~a~~~  245 (323)
T d1fcha_         221 QSEEAVAAYRRALELQPGYIRSRYN  245 (323)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             cchhHHHHHHHHHHHhhccHHHHHH
Confidence            899999999999864  56666554

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=97.02  E-value=0.0021  Score=54.24  Aligned_cols=93  Identities=10%  Similarity=-0.125  Sum_probs=77.6

Q ss_pred             cHHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHH
Q 018965           80 WSDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRA  155 (348)
Q Consensus        80 ~~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~  155 (348)
                      -.++|+..|+++.+.  +++++.+.||.+|. ..++.++|+..|++|.+..  ++.+.+++|.+|.. .|      +..+
T Consensus        52 ~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g------~~~~  123 (259)
T d1xnfa_          52 LRALARNDFSQALAIRPDMPEVFNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GG------RDKL  123 (259)
T ss_dssp             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH-TT------CHHH
T ss_pred             CHHHHHHHHHHhhccCCCCHHHHhhhchHHH-HHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH-Hh------hHHH
Confidence            378999999999875  69999999999998 6789999999999999764  78899999999964 34      6899


Q ss_pred             HHHHHHHHHhC--CCHHHHHHHHHHHh
Q 018965          156 GVALCARAASI--GHVDAVRELGHCLQ  180 (348)
Q Consensus       156 A~~~~~kAA~~--G~~~A~~~Lg~~y~  180 (348)
                      |...|+++.+.  .+..+...++..+.
T Consensus       124 A~~~~~~al~~~p~~~~~~~~~~~~~~  150 (259)
T d1xnfa_         124 AQDDLLAFYQDDPNDPFRSLWLYLAEQ  150 (259)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            99999999875  45666666665544

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.0051  Score=49.56  Aligned_cols=67  Identities=12%  Similarity=0.155  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc--CCHHH
Q 018965          132 ALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR--EFFQS  207 (348)
Q Consensus       132 A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~--G~~~A  207 (348)
                      +..++|.+|.. .|      ++.+|+.++++|.+.  .++.+.+.+|.+|..    -.++.+|+..|++|.+.  .|+.+
T Consensus        64 ~~~nla~~y~k-~~------~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~----~g~~~~A~~~~~~al~l~P~n~~~  132 (170)
T d1p5qa1          64 SHLNLAMCHLK-LQ------AFSAAIESCNKALELDSNNEKGLSRRGEAHLA----VNDFELARADFQKVLQLYPNNKAA  132 (170)
T ss_dssp             HHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCSSCHHH
T ss_pred             HHHHHHHHHHh-hh------hcccccchhhhhhhccccchhhhHHHHHHHHH----hhhHHHHHHHHHHHHHhCCCCHHH
Confidence            44566777654 22      667777777777653  467777777777664    34677777777777665  35555


Q ss_pred             HH
Q 018965          208 VS  209 (348)
Q Consensus       208 ~~  209 (348)
                      ..
T Consensus       133 ~~  134 (170)
T d1p5qa1         133 KT  134 (170)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.0013  Score=47.92  Aligned_cols=71  Identities=14%  Similarity=0.136  Sum_probs=56.8

Q ss_pred             CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC---------CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHH
Q 018965          129 HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI---------GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEA  199 (348)
Q Consensus       129 ~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~---------G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~A  199 (348)
                      +++.+|+||..+..       ..|+.+|+.||++|.+.         ...++.++||.+|..    ..|+++|+.+|++|
T Consensus         4 saddc~~lG~~~~~-------~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~----~g~~~~A~~~y~~a   72 (95)
T d1tjca_           4 TAEDSFELGKVAYT-------EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ----QGDLDKALLLTKKL   72 (95)
T ss_dssp             CHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH----TTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHh----cCChHHHHHHHHHH
Confidence            46778999999864       33899999999999863         126789999999876    56999999999999


Q ss_pred             Hhc--CCHHHHHh
Q 018965          200 NAR--EFFQSVSK  210 (348)
Q Consensus       200 a~~--G~~~A~~~  210 (348)
                      .+.  .++.|..+
T Consensus        73 L~l~P~~~~a~~N   85 (95)
T d1tjca_          73 LELDPEHQRANGN   85 (95)
T ss_dssp             HHHCTTCHHHHHH
T ss_pred             HHhCcCCHHHHHH
Confidence            876  45666655

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.90  E-value=0.0035  Score=54.72  Aligned_cols=98  Identities=15%  Similarity=0.047  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHccCCCCCCccC
Q 018965           81 SDSAHRFLKRCVFAGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK----SH----APALYSLAVIQFNGSGGGKNEKD  152 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~----G~----~~A~~~Lg~~y~~G~g~~~~~~d  152 (348)
                      .++|...|.+|+            .+|. ..++.++|++.|++|++.    ++    +.++.++|.+|.. .|      +
T Consensus        33 ~~~Aa~~y~~aa------------~~y~-~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~-~~------~   92 (290)
T d1qqea_          33 FEEAADLCVQAA------------TIYR-LRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKS-GG------N   92 (290)
T ss_dssp             HHHHHHHHHHHH------------HHHH-HTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TT------C
T ss_pred             HHHHHHHHHHHH------------HHHH-HCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-hC------C
Confidence            578888888874            4555 567889999999999974    33    3578899999964 23      7


Q ss_pred             HHHHHHHHHHHHh----CCC----HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965          153 LRAGVALCARAAS----IGH----VDAVRELGHCLQDGYGVRQNIEKGRRLLIEANA  201 (348)
Q Consensus       153 ~~~A~~~~~kAA~----~G~----~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~  201 (348)
                      +.+|+..|++|.+    .|+    ..+..+||.+|..-   ..|+++|+.+|++|.+
T Consensus        93 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~A~~~~~~A~~  146 (290)
T d1qqea_          93 SVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEND---LHDYAKAIDCYELAGE  146 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhH---HHHHHHHHHHHHHHHH
Confidence            8999999999886    455    55778888888642   2499999999999975

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.0066  Score=48.84  Aligned_cols=92  Identities=20%  Similarity=0.121  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHHHCCC-----------------HHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHH
Q 018965           81 SDSAHRFLKRCVFAGN-----------------LEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQF  141 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G~-----------------~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~  141 (348)
                      +++|+.+|++|.+.-.                 ..++.++|.+|+ -.+++.+|+.++++|.+..  ++.+.+.+|.+|.
T Consensus        29 ~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~-k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~  107 (170)
T d1p5qa1          29 YKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL-KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHL  107 (170)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHH-hhhhcccccchhhhhhhccccchhhhHHHHHHHH
Confidence            6677788877765422                 245567888887 5678999999999999764  8999999999997


Q ss_pred             ccCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHh
Q 018965          142 NGSGGGKNEKDLRAGVALCARAASI--GHVDAVRELGHCLQ  180 (348)
Q Consensus       142 ~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~  180 (348)
                      . .|      ++.+|+..|++|.+.  .++.+...|+.++.
T Consensus       108 ~-~g------~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  141 (170)
T d1p5qa1         108 A-VN------DFELARADFQKVLQLYPNNKAAKTQLAVCQQ  141 (170)
T ss_dssp             H-TT------CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             H-hh------hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            5 23      789999999999886  68999999988764

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=0.00089  Score=63.84  Aligned_cols=111  Identities=14%  Similarity=0.091  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHHHH
Q 018965           81 SDSAHRFLKRCVFAGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAGVA  158 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~  158 (348)
                      .++|...++++.......++++||.++. -..+.++|+.||++|.+..  ++.++++||.+|.. .|      |..+|+.
T Consensus       136 ~~~A~~~~~~al~~~~~~~~~~LG~l~~-~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~-~~------~~~~A~~  207 (497)
T d1ya0a1         136 TSAIVKPQSSSCSYICQHCLVHLGDIAR-YRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS-KG------DHLTTIF  207 (497)
T ss_dssp             -------CCHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH-TT------CHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH-cC------CHHHHHH
Confidence            5678888888877777789999999987 5678999999999999874  77899999999963 23      7899999


Q ss_pred             HHHHHHh--CCCHHHHHHHHHHHhccC------CCCCCHHHHHHHHHHH
Q 018965          159 LCARAAS--IGHVDAVRELGHCLQDGY------GVRQNIEKGRRLLIEA  199 (348)
Q Consensus       159 ~~~kAA~--~G~~~A~~~Lg~~y~~G~------Gv~~d~~~A~~w~~~A  199 (348)
                      +|.+|-.  ..++.|..+|+.+|..-.      -..........||.+.
T Consensus       208 ~y~ral~~~~~~~~a~~nL~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~  256 (497)
T d1ya0a1         208 YYCRSIAVKFPFPAASTNLQKALSKALESRDEVKTKWGVSDFIKAFIKF  256 (497)
T ss_dssp             HHHHHHSSSBCCHHHHHHHHHHHHHHTTSCCCCCSSCCHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCHHHHHHHHHHHHHhhhhhhhhccccccchHHHHHHHH
Confidence            9999986  478999999999886421      1233445555555544

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.70  E-value=0.0056  Score=48.97  Aligned_cols=74  Identities=16%  Similarity=0.099  Sum_probs=44.3

Q ss_pred             HHHHHhhhhhhhccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHHHHH
Q 018965           98 EACYTLGMIRFYCLQNRSSGTSLMAKAAM--KSHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVDAVR  173 (348)
Q Consensus        98 ~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~--~G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~~  173 (348)
                      .+.+++|.+|. .-+++.+|+..|.+|.+  .+++.|.+++|.+|.. .|      ++++|+..|++|.+.  ++..+..
T Consensus        78 ~~~~nla~~~~-~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~-l~------~~~~A~~~~~~al~l~p~n~~~~~  149 (169)
T d1ihga1          78 SCVLNIGACKL-KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQG-LK------EYDQALADLKKAQEIAPEDKAIQA  149 (169)
T ss_dssp             HHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHH-hhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHH-cc------CHHHHHHHHHHHHHhCCCCHHHHH
Confidence            34555666655 34566667776666665  3466666677766653 12      566666666666654  4566666


Q ss_pred             HHHHHH
Q 018965          174 ELGHCL  179 (348)
Q Consensus       174 ~Lg~~y  179 (348)
                      .|+.++
T Consensus       150 ~l~~~~  155 (169)
T d1ihga1         150 ELLKVK  155 (169)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            665554

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.0057  Score=46.80  Aligned_cols=88  Identities=13%  Similarity=0.126  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHCC--CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CH-------HHHHHHHHHHHccCCCCCC
Q 018965           81 SDSAHRFLKRCVFAG--NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HA-------PALYSLAVIQFNGSGGGKN  149 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G--~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~-------~A~~~Lg~~y~~G~g~~~~  149 (348)
                      .++|+..|+++.+..  ++.+.+++|.+|. ..+++++|+.+|++|.+..  ++       .+.+.+|.++..       
T Consensus        20 y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~-------   91 (128)
T d1elra_          20 FDTALKHYDKAKELDPTNMTYITNQAAVYF-EKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFK-------   91 (128)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHhHHHHHH-HcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHH-------
Confidence            789999999999864  7899999999998 6789999999999998732  33       355556666542       


Q ss_pred             ccCHHHHHHHHHHHHhC-CCHHHHHHHH
Q 018965          150 EKDLRAGVALCARAASI-GHVDAVRELG  176 (348)
Q Consensus       150 ~~d~~~A~~~~~kAA~~-G~~~A~~~Lg  176 (348)
                      ..++.+|+++|+++... .+++....+.
T Consensus        92 ~~~~~~A~~~~~kal~~~~~~~~~~~l~  119 (128)
T d1elra_          92 EEKYKDAIHFYNKSLAEHRTPDVLKKCQ  119 (128)
T ss_dssp             TTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence            35899999999998653 4555554443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.58  E-value=0.0091  Score=47.67  Aligned_cols=96  Identities=15%  Similarity=0.101  Sum_probs=70.2

Q ss_pred             HhhhhhhhccCCHHHHHHHHHHHHhC------------------CCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHH
Q 018965          102 TLGMIRFYCLQNRSSGTSLMAKAAMK------------------SHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARA  163 (348)
Q Consensus       102 ~Lg~~y~~~~~d~~~A~~~~~~AA~~------------------G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kA  163 (348)
                      ..|..++ ..+++.+|+.+|++|.+.                  -...+..++|.+|.. .      .++.+|+..|.+|
T Consensus        32 ~~~~~~~-~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~------~~~~~Ai~~~~~a  103 (169)
T d1ihga1          32 NIGNTFF-KSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK-M------SDWQGAVDSCLEA  103 (169)
T ss_dssp             HHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHH-T------TCHHHHHHHHHHH
T ss_pred             HHHHHHH-HcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHh-h------cccchhhhhhhhh
Confidence            3444444 445666666666666421                  244567788998864 2      3899999999999


Q ss_pred             Hh--CCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc--CCHHHHH
Q 018965          164 AS--IGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR--EFFQSVS  209 (348)
Q Consensus       164 A~--~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~--G~~~A~~  209 (348)
                      .+  ..++.+.+.+|.+|..    -.++++|+..|++|.+.  ++..+..
T Consensus       104 l~~~p~~~~a~~~~g~~~~~----l~~~~~A~~~~~~al~l~p~n~~~~~  149 (169)
T d1ihga1         104 LEIDPSNTKALYRRAQGWQG----LKEYDQALADLKKAQEIAPEDKAIQA  149 (169)
T ss_dssp             HTTCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hhhhhhhhhHHHhHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            87  4789999999999986    35899999999999987  4555544

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.51  E-value=0.0023  Score=50.45  Aligned_cols=91  Identities=10%  Similarity=0.027  Sum_probs=65.9

Q ss_pred             CHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcc-C--CCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccC--
Q 018965          113 NRSSGTSLMAKAAMK--SHAPALYSLAVIQFNG-S--GGGKNEKDLRAGVALCARAASI--GHVDAVRELGHCLQDGY--  183 (348)
Q Consensus       113 d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G-~--g~~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~--  183 (348)
                      .+++|+..|++|.+.  .++++.+++|.+|..= .  +........++|+..|++|.+.  .++.+.++||.+|..-.  
T Consensus        12 ~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~   91 (145)
T d1zu2a1          12 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFL   91 (145)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccc
Confidence            367899999999654  6999999999988531 1  1000124568999999999875  78999999999986421  


Q ss_pred             -C----CCCCHHHHHHHHHHHHhcC
Q 018965          184 -G----VRQNIEKGRRLLIEANARE  203 (348)
Q Consensus       184 -G----v~~d~~~A~~w~~~Aa~~G  203 (348)
                       +    ...++.+|..+|++|.+..
T Consensus        92 ~~~~~~~~~~~~~A~~~~~kal~l~  116 (145)
T d1zu2a1          92 TPDETEAKHNFDLATQFFQQAVDEQ  116 (145)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhHHHHHHhHHHhhhhhhcccccC
Confidence             1    1235677888888887654

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.29  E-value=0.025  Score=44.37  Aligned_cols=47  Identities=19%  Similarity=0.214  Sum_probs=24.0

Q ss_pred             CHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          152 DLRAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       152 d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                      ++.+|+++|.+|.+.  .++.|.+.+|.+|..    -.++.+|+.+|++|.+.
T Consensus        82 ~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~----lg~~~~A~~~~~~al~l  130 (153)
T d2fbna1          82 DYPKAIDHASKVLKIDKNNVKALYKLGVANMY----FGFLEEAKENLYKAASL  130 (153)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhccccccchhhhhhHHhHHHHHH----cCCHHHHHHHHHHHHHh
Confidence            445555555555442  345555555555543    22555555555555544

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.21  E-value=0.014  Score=45.90  Aligned_cols=92  Identities=12%  Similarity=-0.018  Sum_probs=64.7

Q ss_pred             HHHHHh--hhhhhhccCCHHHHHHHHHHHHhCC--------------CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHH
Q 018965           98 EACYTL--GMIRFYCLQNRSSGTSLMAKAAMKS--------------HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCA  161 (348)
Q Consensus        98 ~A~~~L--g~~y~~~~~d~~~A~~~~~~AA~~G--------------~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~  161 (348)
                      .|...|  |..++ ...++++|+..|++|.+..              .+.+.+++|.+|.. .|      ++.+|+.++.
T Consensus         8 ~a~~~l~~g~~~~-~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~-lg------~~~~A~~~~~   79 (156)
T d2hr2a1           8 GAYLALSDAQRQL-VAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG-LR------SFDEALHSAD   79 (156)
T ss_dssp             HHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH-TT------CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHH-cC------ccchhhHhhh
Confidence            344445  44444 5578899999999998632              24577889999853 34      6777777777


Q ss_pred             HHHhC-------------CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965          162 RAASI-------------GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANA  201 (348)
Q Consensus       162 kAA~~-------------G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~  201 (348)
                      +|-..             ....+.+++|.+|..    -.++++|+.+|++|.+
T Consensus        80 ~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~----lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          80 KALHYFNRRGELNQDEGKLWISAVYSRALALDG----LGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             HHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             hhhhcccccccccccccchhHHHHhhhHHHHHH----HHHHHHHHHHHHHHHH
Confidence            76542             124478999998876    3489999999999985

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=96.20  E-value=0.015  Score=46.34  Aligned_cols=91  Identities=15%  Similarity=0.059  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHCC-----------------CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHH
Q 018965           81 SDSAHRFLKRCVFAG-----------------NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQF  141 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G-----------------~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~  141 (348)
                      .++|+..|++|...=                 ......++|.+|+ .-+++.+|+.+++++.+.  .++.+.+++|.+|.
T Consensus        31 ~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~-~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~  109 (168)
T d1kt1a1          31 YVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL-KLREYTKAVECCDKALGLDSANEKGLYRRGEAQL  109 (168)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHH-HhhhcccchhhhhhhhhcccchHHHHHHHHHHHH
Confidence            567777777766420                 1123445677766 466788888888888764  57788888888875


Q ss_pred             ccCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Q 018965          142 NGSGGGKNEKDLRAGVALCARAASI--GHVDAVRELGHCL  179 (348)
Q Consensus       142 ~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y  179 (348)
                      . .      .++.+|..+|.++.+.  .++.+...|+.+.
T Consensus       110 ~-l------~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  142 (168)
T d1kt1a1         110 L-M------NEFESAKGDFEKVLEVNPQNKAARLQIFMCQ  142 (168)
T ss_dssp             H-T------TCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred             H-c------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            3 2      2678888888888765  5777777777664

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=96.17  E-value=0.023  Score=45.26  Aligned_cols=99  Identities=11%  Similarity=0.025  Sum_probs=75.5

Q ss_pred             HHHHhhhhhhhccCCHHHHHHHHHHHHhCC-----------------CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHH
Q 018965           99 ACYTLGMIRFYCLQNRSSGTSLMAKAAMKS-----------------HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCA  161 (348)
Q Consensus        99 A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G-----------------~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~  161 (348)
                      .....|..++ ..+++.+|+..|++|...=                 ......++|.+|.. .|      ++.+|+.+++
T Consensus        17 ~~~e~G~~~~-~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~-l~------~~~~Ai~~~~   88 (168)
T d1kt1a1          17 IVKEKGTVYF-KGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLK-LR------EYTKAVECCD   88 (168)
T ss_dssp             HHHHHHHHHH-HTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHH-TT------CHHHHHHHHH
T ss_pred             HHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHH-hh------hcccchhhhh
Confidence            3445566666 5778889999998887410                 12345578988874 33      8999999999


Q ss_pred             HHHh--CCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC--CHHHHH
Q 018965          162 RAAS--IGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE--FFQSVS  209 (348)
Q Consensus       162 kAA~--~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G--~~~A~~  209 (348)
                      ++.+  ..++.+.+++|.+|..    -.++.+|+.+|.+|.+..  ++.+..
T Consensus        89 ~al~l~p~~~~a~~~~~~~~~~----l~~~~~A~~~~~~al~l~P~n~~~~~  136 (168)
T d1kt1a1          89 KALGLDSANEKGLYRRGEAQLL----MNEFESAKGDFEKVLEVNPQNKAARL  136 (168)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred             hhhhcccchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            9987  4799999999999886    458999999999998764  555544

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.16  E-value=0.032  Score=43.71  Aligned_cols=94  Identities=17%  Similarity=0.079  Sum_probs=76.3

Q ss_pred             CcHHHHHHHHHHHHHCCC------------------HHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHH
Q 018965           79 NWSDSAHRFLKRCVFAGN------------------LEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAV  138 (348)
Q Consensus        79 ~~~~~A~~~~~kaA~~G~------------------~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~  138 (348)
                      ....+|+..|++|.+.-.                  .....++|.+|+ .-+++.+|++++++|.+..  ++.|.|.+|.
T Consensus        31 ~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~-~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~  109 (153)
T d2fbna1          31 NEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYN-KNKDYPKAIDHASKVLKIDKNNVKALYKLGV  109 (153)
T ss_dssp             TCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHH-HhcccchhhhhhhccccccchhhhhhHHhHH
Confidence            347899999999886321                  235667888888 7789999999999999986  7899999999


Q ss_pred             HHHccCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHh
Q 018965          139 IQFNGSGGGKNEKDLRAGVALCARAASI--GHVDAVRELGHCLQ  180 (348)
Q Consensus       139 ~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~  180 (348)
                      +|.. .      .++.+|+.+|+++.+.  .++.+...|+.+..
T Consensus       110 ~~~~-l------g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  146 (153)
T d2fbna1         110 ANMY-F------GFLEEAKENLYKAASLNPNNLDIRNSYELCVN  146 (153)
T ss_dssp             HHHH-H------TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHH-c------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            9964 2      3789999999999875  67888888877653

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.85  E-value=0.0057  Score=45.02  Aligned_cols=44  Identities=27%  Similarity=0.433  Sum_probs=38.8

Q ss_pred             CCCCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHhHHHHhccCCchhhc
Q 018965           18 DLFDALPDDLLECVLSKLISSAPSPSDFINVLLTCKRLNRVGLRPTVLS   66 (348)
Q Consensus        18 ~~~~~l~~d~l~~il~~~a~~~~s~~d~~~~~l~~k~~~~~~~~~~~l~   66 (348)
                      ..|..||+|++..||..+     ++.|+..+..+|+.|+.+..++.++.
T Consensus        17 D~i~~LP~Eil~~Ils~L-----d~~dL~~~~~vcr~w~~l~~~~~lW~   60 (102)
T d2ovrb1          17 DFISLLPKELALYVLSFL-----EPKDLLQAAQTCRYWRILAEDNLLWR   60 (102)
T ss_dssp             STTTSSCHHHHHHHHTTS-----CHHHHHHHTTSCHHHHHHHTCSHHHH
T ss_pred             CChhhCCHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            467889999999999987     67899999999999999998877654

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=94.51  E-value=0.048  Score=42.61  Aligned_cols=77  Identities=16%  Similarity=0.006  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHCC--------------CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC-------------CCHHHH
Q 018965           81 SDSAHRFLKRCVFAG--------------NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK-------------SHAPAL  133 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G--------------~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~-------------G~~~A~  133 (348)
                      +++|+..|++|.+..              ...+..++|..|. --.++++|+.++++|...             ....+.
T Consensus        25 y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~-~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~  103 (156)
T d2hr2a1          25 YDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA-GLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAV  103 (156)
T ss_dssp             HHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHH-HcCccchhhHhhhhhhhcccccccccccccchhHHHH
Confidence            778999999988632              2467888999987 567788888888887742             134578


Q ss_pred             HHHHHHHHccCCCCCCccCHHHHHHHHHHHHh
Q 018965          134 YSLAVIQFNGSGGGKNEKDLRAGVALCARAAS  165 (348)
Q Consensus       134 ~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~  165 (348)
                      +++|.+|.. .|      ++++|+.+|++|.+
T Consensus       104 ~~~g~~~~~-lg------~~eeA~~~~~~Al~  128 (156)
T d2hr2a1         104 YSRALALDG-LG------RGAEAMPEFKKVVE  128 (156)
T ss_dssp             HHHHHHHHH-TT------CHHHHHHHHHHHHH
T ss_pred             hhhHHHHHH-HH------HHHHHHHHHHHHHH
Confidence            999999864 34      68999999999875

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=94.20  E-value=0.17  Score=42.71  Aligned_cols=110  Identities=18%  Similarity=0.119  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHHCC---C----HHHHHHhhhhhhhccCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHccCC
Q 018965           81 SDSAHRFLKRCVFAG---N----LEACYTLGMIRFYCLQNRSSGTSLMAKAAMK----SH----APALYSLAVIQFNGSG  145 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G---~----~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~----G~----~~A~~~Lg~~y~~G~g  145 (348)
                      .++|+.+|+++.+.-   +    ..+.+.+|.+|. ..++.++|+.+|+++.+.    ++    ..+.+.++.+|.. .|
T Consensus        28 ~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  105 (366)
T d1hz4a_          28 PDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH-CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA-QG  105 (366)
T ss_dssp             HHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TT
T ss_pred             HHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH-HH
Confidence            789999999988753   2    357888999988 678899999999988753    22    3466777777753 23


Q ss_pred             CCCCccCHHHHHHHHHHHHhC----------CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          146 GGKNEKDLRAGVALCARAASI----------GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       146 ~~~~~~d~~~A~~~~~kAA~~----------G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                            ++.++...+.++...          ........+|.+|..    ..+...+..+|.++.+.
T Consensus       106 ------~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~a~~~~~~~~~~  162 (366)
T d1hz4a_         106 ------FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA----WARLDEAEASARSGIEV  162 (366)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHH----hcchhhhHHHHHHHHHH
Confidence                  678888888777541          123466677887764    45788888888888654

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.66  E-value=0.25  Score=42.83  Aligned_cols=94  Identities=11%  Similarity=0.009  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhh-hccCCHHHHHHHHHHHHhCC--CHHHH-HHHHHHHHccCCCCCCccCHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRF-YCLQNRSSGTSLMAKAAMKS--HAPAL-YSLAVIQFNGSGGGKNEKDLR  154 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~-~~~~d~~~A~~~~~~AA~~G--~~~A~-~~Lg~~y~~G~g~~~~~~d~~  154 (348)
                      .++|+.+++++.+.  .++.+.+.+|.++. -...|..+|+.+++++.+..  +..+. +.+|.+|.. .      ....
T Consensus        89 ~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~-~------~~~~  161 (334)
T d1dcea1          89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQA-A------VAPA  161 (334)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-C------CCHH
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHh-c------cccH
Confidence            57899999998876  47889999998876 34567899999999998763  56675 456666643 2      3678


Q ss_pred             HHHHHHHHHHhC--CCHHHHHHHHHHHhc
Q 018965          155 AGVALCARAASI--GHVDAVRELGHCLQD  181 (348)
Q Consensus       155 ~A~~~~~kAA~~--G~~~A~~~Lg~~y~~  181 (348)
                      +|+.+++++.+.  .+..+.+++|.+|..
T Consensus       162 ~Al~~~~~~i~~~p~~~~a~~~l~~~~~~  190 (334)
T d1dcea1         162 EELAFTDSLITRNFSNYSSWHYRSCLLPQ  190 (334)
T ss_dssp             HHHHHHHTTTTTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            999999999876  689999999998864

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=92.67  E-value=0.08  Score=45.65  Aligned_cols=110  Identities=10%  Similarity=-0.036  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .++|+..|+++.+.  .|+++...||.+|. ..++.++|+..|+++.+..  +..+...++.++...       ....++
T Consensus        12 l~eAl~~l~~al~~~P~d~~ar~~La~lL~-~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~-------~~~~~a   83 (264)
T d1zbpa1          12 LQQALELLIEAIKASPKDASLRSSFIELLC-IDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA-------QARKDF   83 (264)
T ss_dssp             HHHHHHHHHHHHHTCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-------HHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc-------cccHHH
Confidence            78999999999876  69999999999998 7889999999999999874  677777787776421       123334


Q ss_pred             HHHHHHHHhCCCHH---HHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965          157 VALCARAASIGHVD---AVRELGHCLQDGYGVRQNIEKGRRLLIEANAR  202 (348)
Q Consensus       157 ~~~~~kAA~~G~~~---A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~  202 (348)
                      +..+.+++..++++   +.+..+..+..    ..|.++|...+++|.+.
T Consensus        84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~----~gd~~~A~~~~~~a~e~  128 (264)
T d1zbpa1          84 AQGAATAKVLGENEELTKSLVSFNLSMV----SQDYEQVSELALQIEEL  128 (264)
T ss_dssp             TTSCCCEECCCSCHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHH
T ss_pred             HHHhhhhhcccCchHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhc
Confidence            44444443344332   22333443432    34888888888887653

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.27  E-value=0.22  Score=37.82  Aligned_cols=64  Identities=11%  Similarity=0.035  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965          130 APALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASIG---HVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANA  201 (348)
Q Consensus       130 ~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~G---~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~  201 (348)
                      ++++|++|..+....    ...|..+|+..|+..-..+   ..++.|+||..|..    -.|+++|+++++++-+
T Consensus        35 ~qt~F~YAw~Lv~S~----~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyk----lgdy~~A~~~~~~~L~  101 (124)
T d2pqrb1          35 IQSRFNYAWGLIKST----DVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK----LGEYSMAKRYVDTLFE  101 (124)
T ss_dssp             HHHHHHHHHHHHHSS----CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHcCC----cHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHc
Confidence            345555555544321    2345555555555554432   12455555555443    3355555555555543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=91.97  E-value=0.3  Score=41.02  Aligned_cols=93  Identities=13%  Similarity=0.006  Sum_probs=67.6

Q ss_pred             HHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC---C----HHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHh----
Q 018965           97 LEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS---H----APALYSLAVIQFNGSGGGKNEKDLRAGVALCARAAS----  165 (348)
Q Consensus        97 ~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G---~----~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~----  165 (348)
                      ++.....|.+++ ..+|+++|+.+|++|.+.-   +    ..+.+.||.+|.. .|      ++++|+.+|+++.+    
T Consensus        12 ae~~~lrA~~~~-~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~-~g------~~~~A~~~~~~a~~~~~~   83 (366)
T d1hz4a_          12 AEFNALRAQVAI-NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHC-KG------ELTRSLALMQQTEQMARQ   83 (366)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHH-HT------CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHH-CC------CHHHHHHHHHHHHHHHHh
Confidence            344455566666 6789999999999998753   2    3588899999864 23      78999999999865    


Q ss_pred             CCC----HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965          166 IGH----VDAVRELGHCLQDGYGVRQNIEKGRRLLIEANA  201 (348)
Q Consensus       166 ~G~----~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~  201 (348)
                      .++    ..+.+.++..|..    ..+...+...+.+|..
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~al~  119 (366)
T d1hz4a_          84 HDVWHYALWSLIQQSEILFA----QGFLQTAWETQEKAFQ  119 (366)
T ss_dssp             TTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             hcchHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence            233    3466777777764    4578888888887754

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.09  E-value=0.99  Score=38.69  Aligned_cols=120  Identities=8%  Similarity=-0.082  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHHHC--CCHHHHHHhhhhhh---------hccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCC
Q 018965           81 SDSAHRFLKRCVFA--GNLEACYTLGMIRF---------YCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGG  147 (348)
Q Consensus        81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~---------~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~  147 (348)
                      .++|+.++.++.+.  .++.+.+..+.++.         .......+|+.+|+++.+..  ++.+.+.+|.++..-    
T Consensus        45 ~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~----  120 (334)
T d1dcea1          45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL----  120 (334)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC----
T ss_pred             cHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHh----
Confidence            47899999998764  46777766665543         12335778999999998765  788999999887542    


Q ss_pred             CCccCHHHHHHHHHHHHhC--CCHHHH-HHHHHHHhccCCCCCCHHHHHHHHHHHHhcC--CHHHHH
Q 018965          148 KNEKDLRAGVALCARAASI--GHVDAV-RELGHCLQDGYGVRQNIEKGRRLLIEANARE--FFQSVS  209 (348)
Q Consensus       148 ~~~~d~~~A~~~~~kAA~~--G~~~A~-~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G--~~~A~~  209 (348)
                       ...|..+|+.++.++.+.  .+..+. +.+|.+|..    ....++|+.+++++....  +..+..
T Consensus       121 -~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~----~~~~~~Al~~~~~~i~~~p~~~~a~~  182 (334)
T d1dcea1         121 -PEPNWARELELCARFLEADERNFHCWDYRRFVAAQA----AVAPAEELAFTDSLITRNFSNYSSWH  182 (334)
T ss_dssp             -SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----CCCHHHHHHHHHTTTTTTCCCHHHHH
T ss_pred             -ccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHh----ccccHHHHHHHHHHHHcCCCCHHHHH
Confidence             123789999999999865  567775 466677764    457889999999998774  344444

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.62  E-value=0.45  Score=35.99  Aligned_cols=75  Identities=7%  Similarity=0.085  Sum_probs=56.8

Q ss_pred             CHHHHHHhhhhhh--hccCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CC
Q 018965           96 NLEACYTLGMIRF--YCLQNRSSGTSLMAKAAMKS---HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GH  168 (348)
Q Consensus        96 ~~~A~~~Lg~~y~--~~~~d~~~A~~~~~~AA~~G---~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~  168 (348)
                      .++++|+.|....  ....|..+|+..|+..-..+   ..++.|.||+.|.. .|      |+++|.+++.++-+.  +|
T Consensus        34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyk-lg------dy~~A~~~~~~~L~ieP~n  106 (124)
T d2pqrb1          34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK-LG------EYSMAKRYVDTLFEHERNN  106 (124)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-HT------CHHHHHHHHHHHHHHCTTC
T ss_pred             CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH-Hh------hHHHHHHHHHHHHccCCCc
Confidence            3568899888877  34567889999999988754   24788999999974 33      899999999998764  67


Q ss_pred             HHHHHHHHH
Q 018965          169 VDAVRELGH  177 (348)
Q Consensus       169 ~~A~~~Lg~  177 (348)
                      ..|+...-.
T Consensus       107 ~qA~~L~~~  115 (124)
T d2pqrb1         107 KQVGALKSM  115 (124)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777654433

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.46  E-value=0.025  Score=41.38  Aligned_cols=43  Identities=21%  Similarity=0.268  Sum_probs=35.1

Q ss_pred             CCCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHhHHHHhcc-CCchhhc
Q 018965           19 LFDALPDDLLECVLSKLISSAPSPSDFINVLLTCKRLNRVG-LRPTVLS   66 (348)
Q Consensus        19 ~~~~l~~d~l~~il~~~a~~~~s~~d~~~~~l~~k~~~~~~-~~~~~l~   66 (348)
                      .|+.||+|++..||+.+     ++.|+..+.++|+.|+... .++..+.
T Consensus         5 ~~~~LP~Ell~~I~s~L-----d~~dL~~~s~Vcr~W~~~~~~d~~LWr   48 (100)
T d1nexb1           5 LITSLPFEISLKIFNYL-----QFEDIINSLGVSQNWNKIIRKSTSLWK   48 (100)
T ss_dssp             HHHHSCHHHHHHHHTTS-----CHHHHHHHTTTCHHHHHHHHTCSHHHH
T ss_pred             chhhCCHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            46679999999999877     6789999999999999875 4555443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.07  E-value=3  Score=35.17  Aligned_cols=112  Identities=12%  Similarity=0.066  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHHCCCH---HHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHH
Q 018965           81 SDSAHRFLKRCVFAGNL---EACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRA  155 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G~~---~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~  155 (348)
                      .+++...|.++.+....   .....++.+.. ..++.+.|...|++|.+.+  +......++.+.....|      |.+.
T Consensus       115 ~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~-~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~------~~~~  187 (308)
T d2onda1         115 YEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR-RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSK------DKSV  187 (308)
T ss_dssp             HHHHHHHHHHHHTSSSSCTHHHHHHHHHHHH-HHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSC------CHHH
T ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcc------CHHH
Confidence            67888888887765432   23334444433 4567888999999988776  44555566665544444      7888


Q ss_pred             HHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965          156 GVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE  203 (348)
Q Consensus       156 A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G  203 (348)
                      |...|+++.+.  -++.....++.+...    ..|+.+|+.+|++|....
T Consensus       188 a~~i~e~~l~~~p~~~~~w~~y~~~~~~----~g~~~~aR~~fe~ai~~~  233 (308)
T d2onda1         188 AFKIFELGLKKYGDIPEYVLAYIDYLSH----LNEDNNTRVLFERVLTSG  233 (308)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHT----TCCHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhC
Confidence            99999999875  456666666666553    238889999999997754

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.79  E-value=2.5  Score=33.27  Aligned_cols=62  Identities=10%  Similarity=-0.116  Sum_probs=49.2

Q ss_pred             CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965          129 HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANA  201 (348)
Q Consensus       129 ~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~  201 (348)
                      ...+..+++..+.. .|      ++.+|+.+++++.+.  .+..+...|+..|..    ..+..+|++.|+++..
T Consensus        66 ~~~a~~~la~~~~~-~g------~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~----~Gr~~eAl~~y~~~~~  129 (179)
T d2ff4a2          66 KVLAHTAKAEAEIA-CG------RASAVIAELEALTFEHPYREPLWTQLITAYYL----SDRQSDALGAYRRVKT  129 (179)
T ss_dssp             HHHHHHHHHHHHHH-TT------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHT----TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-CC------CchHHHHHHHHHHHhCCccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHH
Confidence            45678888888753 23      789999999998765  688999999998876    3588899999998743

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.15  E-value=5.6  Score=33.33  Aligned_cols=111  Identities=10%  Similarity=0.114  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHHCC--CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965           81 SDSAHRFLKRCVFAG--NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAG  156 (348)
Q Consensus        81 ~~~A~~~~~kaA~~G--~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A  156 (348)
                      .++|...|.++.+.+  +.......+.+.....+|.+.|...|+++.+.  .++.....++.++.. .|      |..+|
T Consensus       150 ~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~-~g------~~~~a  222 (308)
T d2onda1         150 IKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH-LN------EDNNT  222 (308)
T ss_dssp             HHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TC------CHHHH
T ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-cC------ChHHH
Confidence            688999999998765  45555566665445678999999999999986  456677777776653 44      78999


Q ss_pred             HHHHHHHHhCC--CHH---HHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965          157 VALCARAASIG--HVD---AVRELGHCLQDGYGVRQNIEKGRRLLIEANA  201 (348)
Q Consensus       157 ~~~~~kAA~~G--~~~---A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~  201 (348)
                      ..+|++|....  +++   -.+.--.-|+.-.|   |.+.+...++++.+
T Consensus       223 R~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G---~~~~~~~~~~r~~~  269 (308)
T d2onda1         223 RVLFERVLTSGSLPPEKSGEIWARFLAFESNIG---DLASILKVEKRRFT  269 (308)
T ss_dssp             HHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHS---CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH
Confidence            99999998753  222   12222223333334   77777888887754

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.54  E-value=0.16  Score=37.93  Aligned_cols=38  Identities=26%  Similarity=0.329  Sum_probs=31.6

Q ss_pred             ChHHHHHHHHHhhcCCCCHHHHHHHHHHhHHHHhccCCchhhc
Q 018965           24 PDDLLECVLSKLISSAPSPSDFINVLLTCKRLNRVGLRPTVLS   66 (348)
Q Consensus        24 ~~d~l~~il~~~a~~~~s~~d~~~~~l~~k~~~~~~~~~~~l~   66 (348)
                      ++||+..||+.+     ++.|+..+..+|+.|+.+..++.++.
T Consensus        19 ~~EI~~~Ils~L-----d~~dL~~~s~Vck~W~~l~~d~~lWk   56 (118)
T d1p22a1          19 LDHIAENILSYL-----DAKSLCAAELVCKEWYRVTSDGMLWK   56 (118)
T ss_dssp             CHHHHHHHHTTC-----CHHHHHHHHHHCHHHHHHHHHTTHHH
T ss_pred             hHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence            368999998876     66799999999999999987766654