Citrus Sinensis ID: 018975

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35
Protein Sequence
MAEEEVAMELEAVQAVYGDECVVLDSYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIESKGLDDQRQKHLISCIQDKAHELTSCLMLVALCEEAVAKLSAMNHPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCPVCRKVFHVKDLEHVLNLVGSQSSHLSSNGNEVDDDDKYLHSDSENIRRQKFEAILKLQEENSGLIEPKRDLVVLPGMFLPQPATLPTPTSTKETTEQEQGEQSAPAEINATGSSNRASGSKHWNSGMRKRRGRNLRNQRQWIRKDDSSVN
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHcccccEEccccccEEEEEEEcccccccccccEEEEEEEEcccccccccccEEEcccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccEEccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHcHcccEEEcccccEEEEEEEcccccccccEEEEEEEEEEccccccccccEEEEEccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccEEEEEEccccccccccccccEEEcccHcHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccccccccccccccccccccccHHHHHHHHHccccccccccccccccHHHccccHHHHHHHHHHHHHHHHHHccccEccccccEEEEccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccc
Coil and Loop (DISEMBL)
MAEEEVAMELEAVQAVygdecvvldsypphlhlrikprtadvsSQQFVEAVIgiraspkypehppridlieskglddqRQKHLISCIQDKAHELTSCLMLVALCEEAVAKLSamnhpdgdcplclyplfrkdknvevlpfmklmscfhcfhseCIVRWWNWLQngietdscatvhpntdmrnqkdmlgpidgnmgtcpvcrkvfhvkDLEHVLNLVgsqsshlssngnevddddkylhsdseNIRRQKFEAILKLQEensgliepkrdlvvlpgmflpqpatlptptstketteqeqgeqsapaeinatgssnrasgskhwnsgmrkrrgrnlrnqrqwirkddssvn
Flexible Loop (DISEMBL)
MAEEEVAMELEAVQAVYGDECVVLDSYPPHLHLRIKprtadvssQQFVEAVIgiraspkypehPPRIDLIESKGLDDQRQKHLISCIQDKAHELTSCLMLVALCEEAVAKLSAMNHPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCPVCRKVFHVKDLEHVLNLVgsqsshlssngnevdddDKYLHSDSENIRRQKFEAILKLQeensgliepkrDLVVLPGMFLPQPATLPTPTSTKETTEqeqgeqsapaeinatgssnrasgskhwnsgmrkrrgrnlrnqrqwirkddssvn
Low Complexity Region (SEG)
MaeeevameleavqavYGDECVVLDSYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIESKGLDDQRQKHLISCIQDKAHELTSCLMLVALCEEAVAKLSAMNHPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCPVCRKVFHVKDLEHVLNLVGSQSSHLSSNGNEVDDDDKYLHSDSENIRRQKFEAILKLQEENSGLIEPKRDLVVLPGMFLPQPAtlptptstketteqeqgeqSAPAEINATGSSNRASGSKHWNSGMrkrrgrnlrnqrqWIRKDDSSVN
Disordered region (IsUnstruct)
*********LEAVQAVYGDECVVLDSYPPHLHLRIKPRTADVSSQQFVEAVIGIRA***********************QKHLISCIQDKAHELTSCLMLVALCEEAVAKLSAMNHPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHP*********MLGPIDGNMGTCPVCRKVFHVKDLEHVLNLV**************************************************RDLVVLPGMFL***********************************************************************
Disordered Region (DISOPRED)
*AEEEVAMELEAVQAVYGDECVVLDSYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIESKGLDDQRQKHLISCIQDKAHELTSCLMLVALCEEAVAKLSAMNHPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQN*****************************MGTCPVCRKVFHVKDLEHVL*********************************QKFEAILKLQEENSGLIEPKRDLVVL****************************************************************************
Disordered Region (DISEMBL)
********ELEAVQAVYGDECVVLDSYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIESKGLDDQRQKHLISCIQDKAHELTSCLMLVALCEEAVAKLSAMNHPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCPVCRKVFHVKDLEHVLNLVG************VDDDDKYLHSDSENIRRQKFEAILKLQEENSGLIEPKRDLVVLPGMFLPQPATLP*******************AEINAT**********************NLRNQRQW*********
Disordered Region (DISPRO)
****EVAMELEAVQAVYGDECVVLDSYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIESKGLDDQRQKHLISCIQDKAHELTSCLMLVALCEEAVAKLSAMNHPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVH*****************NMGTCPVCRKVFHVKDLEHVLNLVGSQSSHLSSNGNEVDDDDKYLHSDSENIRRQKFEAILKLQEENSGLIEPKRDLVVLPGMFLP**********************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAEEEVAMELEAVQAVYGDECVVLDSYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIESKGLDDQRQKHLISCIQDKAHELTSCLMLVALCEEAVAKLSAMNHPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCPVCRKVFHVKDLEHVLNLVGSQSSHLSSNGNEVDDDDKYLHSDSENIRRQKFEAILKLQEENSGLIEPKRDLVVLPGMFLPQPATLPTPTSTKETTEQEQGEQSAPAEINATGSSNRASGSKHWNSGMRKRRGRNLRNQRQWIRKDDSSVN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	348	2.2.26 [Sep-21-2011]
Q9QZR0	456	E3 ubiquitin-protein liga	yes	no	0.652	0.497	0.241	3e-13
Q5E9N3	458	E3 ubiquitin-protein liga	yes	no	0.741	0.563	0.233	4e-12
Q96BH1	459	E3 ubiquitin-protein liga	yes	no	0.781	0.592	0.220	2e-11
Q9LX30	1241	Probable serine/threonine	no	no	0.347	0.097	0.246	0.0002
Q9H446	243	RWD domain-containing pro	no	no	0.313	0.448	0.234	0.0003
Q9CQK7	243	RWD domain-containing pro	no	no	0.313	0.448	0.234	0.0003
Q99ND9	243	RWD domain-containing pro	no	no	0.313	0.448	0.234	0.0003

>sp|Q9QZR0|RNF25_MOUSE E3 ubiquitin-protein ligase RNF25 OS=Mus musculus GN=Rnf25 PE=1 SV=2

 Score = 76.3 bits (186), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 112/261 (42%), Gaps = 34/261 (13%)

Query: 9   ELEAVQAVYGDECVVLDS---YPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPP 65
           E+E ++++Y DE  V+      P  + + + P TA+V   QFV   + +R   +YP   P
Sbjct: 19  EVEVLESIYLDELQVMKGNGRSPWEIFITLHPATAEVQDSQFVCFTLVLRIPVQYPHEVP 78

Query: 66  RIDLIESKGLDDQRQKHLISCIQDKAHELTSCLMLVALCEEAVAKLSAMNHPDGDCPLCL 125
           +I +   +GL D++   +   +   A E     ML  L E+    L+  N P G C +CL
Sbjct: 79  QISIRNPRGLSDEQIHKISQALGHVAKEGLGTAMLYELIEKGKEILTDNNIPHGQCVICL 138

Query: 126 YPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKD 185
           Y    K+       F K   C+H FH  C+ R+   ++  + T          +   ++ 
Sbjct: 139 YGFQEKEA------FTK-TPCYHYFHCHCLARYIQHMEQELTTQ---------EQEQERQ 182

Query: 186 MLGPIDGNMGT-CPVCRKVFHVKDLEHVLNLVGSQSSHLSSNGNEVDDDDKYLHSDSENI 244
            +      +G  CPVCR+   V DL  +                E     +     +E++
Sbjct: 183 HVVTKQKAVGVQCPVCREPL-VYDLASL------------KAAPEPQQPMELYQPSAESL 229

Query: 245 RRQ-KFEAILKLQEENSGLIE 264
           R+Q + + + + Q+E  G+I+
Sbjct: 230 RQQEELKLLYQRQQEKGGIID 250

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of NKD2. Stimulates transcription mediated by NF-kappa-B.
Mus musculus (taxid: 10090)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q5E9N3|RNF25_BOVIN E3 ubiquitin-protein ligase RNF25 OS=Bos taurus GN=RNF25 PE=2 SV=1

 Score = 72.4 bits (176), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 125/308 (40%), Gaps = 50/308 (16%)

Query: 9   ELEAVQAVYGDECVVLD----SYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHP 64
           E+E ++++Y DE  V+     S P  +++ + P TA+    Q+V   + ++   +YP   
Sbjct: 19  EVEVLESIYLDELQVVKGNGRSSPWEIYITLHPATAEDQDSQYVCFTLVLQVPTQYPHEV 78

Query: 65  PRIDLIESKGLDDQRQKHLISCIQDKAHELTSCLMLVALCEEAVAKLSAMNHPDGDCPLC 124
           P+I +   +GL D++   +   +   A       ML  L E+    L+  N P G C +C
Sbjct: 79  PQISIRNPRGLSDEQIHKISQALSHVAEAGLGTAMLYELIEKGKEILTDNNIPHGQCVIC 138

Query: 125 LYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQK 184
           LY    K+       F K   C+H F   C+ R+   +++ ++           +   ++
Sbjct: 139 LYGFQEKEA------FTK-TPCYHYFRCHCLARYIQHMEHELQAQ-------GREREQER 184

Query: 185 DMLGPIDGNMGTCPVCRKVFHVKDLEHVLNLVGSQSSHLSSNGNEVDDDDKYLHSDSENI 244
               P       CPVCR+   V DL  +                E     +    D+E++
Sbjct: 185 QHAAPEQAVGVQCPVCREPL-VYDLASL------------KAAPEPQQPMELYQPDAESL 231

Query: 245 RRQ-KFEAILKLQEENSGLI----EPKRDLVVL---PGMFLP-----------QPATLPT 285
           R+Q + + + + Q+E  G+I    E  R  + L   P    P           QP+TL T
Sbjct: 232 RQQEERKRLYQRQQERGGIIDLEAERNRYFISLQQPPAPLEPESAIDVSRGSHQPSTLAT 291

Query: 286 PTSTKETT 293
             ST   T
Sbjct: 292 KPSTTSAT 299

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of NKD2. Stimulates transcription mediated by NF-kappa-B.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q96BH1|RNF25_HUMAN E3 ubiquitin-protein ligase RNF25 OS=Homo sapiens GN=RNF25 PE=1 SV=1

 Score = 70.5 bits (171), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/308 (22%), Positives = 130/308 (42%), Gaps = 36/308 (11%)

Query: 9   ELEAVQAVYGDECVVLD----SYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHP 64
           E+E ++++Y DE  V+     + P  +++ + P TA+    Q+V   + ++   +YP   
Sbjct: 19  EVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEV 78

Query: 65  PRIDLIESKGLDDQRQKHLISCIQDKAHELTSCLMLVALCEEAVAKLSAMNHPDGDCPLC 124
           P+I +   +GL D++   ++  +   A       ML  L E+    L+  N P G C +C
Sbjct: 79  PQISIRNPRGLSDEQIHTILQVLGHVAKAGLGTAMLYELIEKGKEILTDNNIPHGQCVIC 138

Query: 125 LYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQK 184
           LY    K+       F K   C+H FH  C+ R+   ++  ++               ++
Sbjct: 139 LYGFQEKEA------FTK-TPCYHYFHCHCLARYIQHMEQELKAQGQEQEQERQHATTKQ 191

Query: 185 DMLGPIDGNMGTCPVCRKVFHVKDLEHVLNLVGSQSSHLSSNGNEVDDDDKYLHSDSENI 244
             +G        CPVCR+   V DL  +                E     +     +E++
Sbjct: 192 KAVG------VQCPVCREPL-VYDLASL------------KAAPEPQQPMELYQPSAESL 232

Query: 245 RRQ-KFEAILKLQEENSGLI--EPKRDLVVLPGMFLPQPATLPTPTSTKETTEQEQGEQS 301
           R+Q + + + + Q+E  G+I  E +R+   +    L QP     P S  + ++  Q   +
Sbjct: 233 RQQEERKRLYQRQQERGGIIDLEAERNRYFI---SLQQPPAPAEPESAVDVSKGSQPPST 289

Query: 302 APAEINAT 309
             AE++ +
Sbjct: 290 LAAELSTS 297

E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of NKD2 (By similarity). Stimulates transcription mediated by NF-kappa-B.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9LX30|GCN2_ARATH Probable serine/threonine-protein kinase GCN2 OS=Arabidopsis thaliana GN=GCN2 PE=2 SV=2

 Score = 47.4 bits (111), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 69/130 (53%), Gaps = 9/130 (6%)

Query: 4   EEVAMELEAVQAVYGDEC-VVLDSY-PPHLHLRIKPRTADVSSQQF-VEAVIGIRASPKY 60
           E ++ E+ A+ A++ ++C VV DS  PP + ++++P + D+  +   + A++ +R  P Y
Sbjct: 33  ELLSEEITALSAIFQEDCKVVSDSRSPPQIAIKLRPYSKDMGYEDTDISAMLIVRCLPGY 92

Query: 61  PEHPPRIDLIESKGLDDQRQKHLISCIQDKAHE-----LTSCLMLVALCEEAVAKLSAMN 115
           P   P++ +   +GL     + L+S ++D+A+            LV   +E ++++   +
Sbjct: 93  PYKCPKLQITPEQGLTTADAEKLLSLLEDQANSNAREGRVMIFNLVEAAQEFLSEIIPES 152

Query: 116 HPDGDCPLCL 125
           H +   P CL
Sbjct: 153 HDEESVP-CL 161

Protein kinase that may be involved in the phosphorylation of the alpha subunit of eIF-2.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9H446|RWDD1_HUMAN RWD domain-containing protein 1 OS=Homo sapiens GN=RWDD1 PE=1 SV=1

 Score = 46.6 bits (109), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 2/111 (1%)

Query: 4   EEVAMELEAVQAVYGDECVVLDSYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEH 63
           EE   ELEA++++Y D   VL   PP   + +     +  + + V+  +    S KYP+ 
Sbjct: 6   EEQRNELEALESIYPDSFTVLSENPPSFTITVTSEAGE--NDETVQTTLKFTYSEKYPDE 63

Query: 64  PPRIDLIESKGLDDQRQKHLISCIQDKAHELTSCLMLVALCEEAVAKLSAM 114
            P  ++   + L+D     ++  +  +A E    +M+  L      KL+ +
Sbjct: 64  APLYEIFSQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQEKLNEI 114

Protects DRG2 from proteolytic degradation.

Homo sapiens (taxid: 9606)

>sp|Q9CQK7|RWDD1_MOUSE RWD domain-containing protein 1 OS=Mus musculus GN=Rwdd1 PE=1 SV=1

 Score = 46.6 bits (109), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 2/111 (1%)

Query: 4   EEVAMELEAVQAVYGDECVVLDSYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEH 63
           EE   ELEA++++Y D   VL   PP   + +     +  + + V+  +    S KYP+ 
Sbjct: 6   EEQRNELEALESIYPDSFTVLSESPPSFTITVTSEAGE--NDETVQTTLKFTYSEKYPDE 63

Query: 64  PPRIDLIESKGLDDQRQKHLISCIQDKAHELTSCLMLVALCEEAVAKLSAM 114
            P  ++   + L+D     ++  +  +A E    +M+  L      KL+ +
Sbjct: 64  TPLYEIFSQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQEKLNEI 114

Protects DRG2 from proteolytic degradation.

Mus musculus (taxid: 10090)

>sp|Q99ND9|RWDD1_RAT RWD domain-containing protein 1 OS=Rattus norvegicus GN=Rwdd1 PE=2 SV=1

 Score = 46.6 bits (109), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 2/111 (1%)

Query: 4   EEVAMELEAVQAVYGDECVVLDSYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEH 63
           EE   ELEA++++Y D   VL   PP   + +     +  + + V+  +    S KYP+ 
Sbjct: 6   EEQRNELEALESIYPDSFTVLSENPPSFTITVTSEAGE--NDETVQTTLKFTYSEKYPDE 63

Query: 64  PPRIDLIESKGLDDQRQKHLISCIQDKAHELTSCLMLVALCEEAVAKLSAM 114
            P  ++   + L+D     ++  +  +A E    +M+  L      KL+ +
Sbjct: 64  APLYEIFSQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQEKLNEI 114

Protects DRG2 from proteolytic degradation.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	348
224067503	354	predicted protein [Populus trichocarpa]	0.997	0.980	0.602	1e-117
255541032	355	RING finger protein, putative [Ricinus c	0.956	0.938	0.629	1e-116
297734619	355	unnamed protein product [Vitis vinifera]	0.954	0.935	0.633	1e-115
359489298	429	PREDICTED: uncharacterized protein LOC10	0.916	0.743	0.636	1e-110
359806693	366	uncharacterized protein LOC100791789 [Gl	0.931	0.885	0.558	1e-100
30695166	366	ubiquitin-protein ligase RNF25 [Arabidop	0.784	0.745	0.603	5e-95
334186148	383	ubiquitin-protein ligase RNF25 [Arabidop	0.784	0.712	0.561	2e-90
297817326	335	predicted protein [Arabidopsis lyrata su	0.683	0.710	0.565	2e-82
108864512	379	RWD domain containing protein, expressed	0.841	0.773	0.496	3e-82
226499170	358	LOC100282323 [Zea mays] gi|195621552|gb|	0.922	0.896	0.473	5e-82

>gi|224067503|ref|XP_002302496.1| predicted protein [Populus trichocarpa] gi|222844222|gb|EEE81769.1| predicted protein [Populus trichocarpa]

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 214/355 (60%), Positives = 262/355 (73%), Gaps = 8/355 (2%)

Query: 1   MAEEEVAMELEAVQAVYGDECVVLDSYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKY 60
           MAEEEV +E+EAV A+YGD+CV+L+S+PPHLHL IKPRTAD+SSQQFVEAVIGIRA P+Y
Sbjct: 1   MAEEEVLIEVEAVLAMYGDDCVILESFPPHLHLHIKPRTADISSQQFVEAVIGIRAGPQY 60

Query: 61  PEHPPRIDLIESKGLDDQRQKHLISCIQDKAHELTSCLMLVALCEEAVAKLSAMNHPDGD 120
           P  PP IDLIESKGLD +RQK LI+ IQ+KA EL+SCLMLVALCEEAV KL+ MNHPDGD
Sbjct: 61  PSKPPWIDLIESKGLDGERQKQLITGIQEKACELSSCLMLVALCEEAVEKLTVMNHPDGD 120

Query: 121 CPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPN--- 177
           CPLC+ P   +D+  E LPFMKLMSCFHCFH ECIVRWWNW+Q   E+++  +       
Sbjct: 121 CPLCMCPFVPEDEQDEALPFMKLMSCFHCFHCECIVRWWNWIQKEKESNTSTSSSTTLLQ 180

Query: 178 -TDMRNQ---KDMLGPIDGNMGTCPVCRKVFHVKDLEHVLNLVGSQSSHLSSNGNEVDDD 233
             +M NQ    D+ G ++  MG CPVCRKVFHVKD EHVL+LVG+Q+S L S   E+  +
Sbjct: 181 IKEMGNQNGLSDVHGVLEERMGDCPVCRKVFHVKDFEHVLDLVGTQASQLDSEA-EIKYE 239

Query: 234 DKYLHSDSENIRRQKFEAILKLQEENSGLIEPKRDLVVLPGMFLPQPATLPTPTSTKETT 293
           +K LHSDSEN RRQKFEAILKLQ+ENSGLIEPKR++VV+PG++LPQ AT    T  KET 
Sbjct: 240 EKLLHSDSENFRRQKFEAILKLQQENSGLIEPKREIVVVPGIYLPQRATSAAQTVNKETA 299

Query: 294 EQEQGEQSAPAEINATGSSNRASGSKHWNSGMRKRRGRNLRNQRQWIRKDDSSVN 348
           E +  E     E N   S NR    +  NSG R+    + R   QW+R+++ + +
Sbjct: 300 EHQGTEARPSTETNLGSSLNRPRPRESRNSGRRQGVRNSRRPVSQWVRRENGTAD 354

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541032|ref|XP_002511580.1| RING finger protein, putative [Ricinus communis] gi|223548760|gb|EEF50249.1| RING finger protein, putative [Ricinus communis]

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 214/340 (62%), Positives = 251/340 (73%), Gaps = 7/340 (2%)

Query: 14  QAVYGDECVVLDSYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIESK 73
           QA+YGD+CVV+DS+PPHLH+ IKPRTADVSSQQFVEA+IGIRA PKYP  PP I+LIESK
Sbjct: 18  QAMYGDDCVVIDSFPPHLHVHIKPRTADVSSQQFVEAIIGIRAGPKYPNEPPCINLIESK 77

Query: 74  GLDDQRQKHLISCIQDKAHELTSCLMLVALCEEAVAKLSAMNHPDGDCPLCLYPLFRKDK 133
           GLDDQRQK LIS IQDKA EL+SCLMLVALCEEAV KLS MNHPDG+CPLCLYPL  +D+
Sbjct: 78  GLDDQRQKQLISSIQDKACELSSCLMLVALCEEAVEKLSIMNHPDGNCPLCLYPLVPEDE 137

Query: 134 NVEVLPFMKLMSCFHCFHSECIVRWWNWLQ----NGIETDSCATVHPNTDMRNQKDMLGP 189
             E LPFMKLMSCFHCFHSECI+RWWNWLQ    +   + S  TVH      NQ  +   
Sbjct: 138 PDETLPFMKLMSCFHCFHSECIMRWWNWLQKEKDSNASSSSITTVHFVEGRVNQNAIHEL 197

Query: 190 IDGNMGTCPVCRKVFHVKDLEHVLNLVGSQSSHLSSNGNEVDDDDKYLHSDSENIRRQKF 249
           +  ++G CPVCRKVFH KD EHVL+LVG     LSS+  EV+ +   L SDSE+IRRQKF
Sbjct: 198 MGESLGNCPVCRKVFHTKDFEHVLSLVGVHCFELSSDRKEVNKE--LLQSDSESIRRQKF 255

Query: 250 EAILKLQEENSGLIEPKRDLVVLPGMFLPQPATLPTPTSTKETTEQEQGEQSAPAEINAT 309
           EA+LKLQ+EN+GLIEPK+ LVVLPGM+LPQP T+P     KETT + Q +     E    
Sbjct: 256 EALLKLQQENNGLIEPKKSLVVLPGMYLPQPVTVPAQMVNKETTVETQRDSRVSMETKTG 315

Query: 310 GSSNRASGSKHWNSGMRKRRGRNLRNQ-RQWIRKDDSSVN 348
            SSN+ S  +  N G R +  +N R Q RQW+RK+D   N
Sbjct: 316 DSSNKPSPRERRNLGRRMQVTQNARKQVRQWVRKEDGPSN 355

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734619|emb|CBI16670.3| unnamed protein product [Vitis vinifera]

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 214/338 (63%), Positives = 265/338 (78%), Gaps = 6/338 (1%)

Query: 14  QAVYGDECVVLDSYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIESK 73
           QAVYG++C+VLD +PPHLH+ IKPRTADVSSQQFVEAV+GI+A  KYP  PP ID+I+SK
Sbjct: 14  QAVYGEDCLVLDHFPPHLHVHIKPRTADVSSQQFVEAVLGIQAGSKYPNEPPIIDIIDSK 73

Query: 74  GLDDQRQKHLISCIQDKAHELTSCLMLVALCEEAVAKLSAMNHPDGDCPLCLYPLFRKDK 133
           GLD++RQ HLI  I++KA EL+SCLMLVALCEEAV +LS MNHPDG+CPLCLYPLF + K
Sbjct: 74  GLDEERQMHLIRSIRNKACELSSCLMLVALCEEAVERLSTMNHPDGNCPLCLYPLFPEHK 133

Query: 134 NVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETD----SCATVHPNTDMRNQKDMLGP 189
              +LPFMKLMSCFHCFHSECI+RWWNWLQ   E D    S A V P+ ++  Q+ M G 
Sbjct: 134 QNNILPFMKLMSCFHCFHSECIIRWWNWLQTQEEMDPDNSSSAIVQPSNEIEQQQGMHGM 193

Query: 190 IDGNMGTCPVCRKVFHVKDLEHVLNLVGSQSSHLSSNGNEVDDDDKYLHSDSENIRRQKF 249
            +G+ G CPVCRKVFH KD+EHVL+LVGS SS+LSSNG E+ DD+K LHSDSE  RR KF
Sbjct: 194 TEGSTGNCPVCRKVFHAKDIEHVLSLVGSHSSNLSSNGTEITDDEKLLHSDSELTRRLKF 253

Query: 250 EAILKLQEENSGLIEPKRDLVVLPGMFLPQPATLPTPTSTK-ETTEQEQGEQSAPAEINA 308
           EA+LKLQEENSGLIEPK++ V++PGMFL +P   P   S K  T+EQ+Q +    +E ++
Sbjct: 254 EAVLKLQEENSGLIEPKKNGVIVPGMFLQRPIAPPPALSAKGPTSEQQQRDAITFSETSS 313

Query: 309 TGSSNRASGSKHWNSGMRKRRGRNLRNQ-RQWIRKDDS 345
           +GSS+RAS S+  N GMR+ R RN R   +QW++KD++
Sbjct: 314 SGSSSRASTSEQRNLGMRRHRVRNSRKPVKQWVKKDNT 351

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489298|ref|XP_002270913.2| PREDICTED: uncharacterized protein LOC100253028 [Vitis vinifera]

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 205/322 (63%), Positives = 253/322 (78%), Gaps = 3/322 (0%)

Query: 14  QAVYGDECVVLDSYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIESK 73
           QAVYG++C+VLD +PPHLH+ IKPRTADVSSQQFVEAV+GI+A  KYP  PP ID+I+SK
Sbjct: 14  QAVYGEDCLVLDHFPPHLHVHIKPRTADVSSQQFVEAVLGIQAGSKYPNEPPIIDIIDSK 73

Query: 74  GLDDQRQKHLISCIQDKAHELTSCLMLVALCEEAVAKLSAMNHPDGDCPLCLYPLFRKDK 133
           GLD++RQ HLI  I++KA EL+SCLMLVALCEEAV +LS MNHPDG+CPLCLYPLF + K
Sbjct: 74  GLDEERQMHLIRSIRNKACELSSCLMLVALCEEAVERLSTMNHPDGNCPLCLYPLFPEHK 133

Query: 134 NVEVLPFMKLMSCFHCFHSECIVRWWNWLQNG--IETDSCATVHPNTDMRNQKDMLGPID 191
              +LPFMKLMSCFHCFHSECI+RWWNWLQ    ++ D+ +T+H      + K M G  +
Sbjct: 134 QNNILPFMKLMSCFHCFHSECIIRWWNWLQTQEEMDPDNSSTLHIQQGSTSSKSMHGMTE 193

Query: 192 GNMGTCPVCRKVFHVKDLEHVLNLVGSQSSHLSSNGNEVDDDDKYLHSDSENIRRQKFEA 251
           G+ G CPVCRKVFH KD+EHVL+LVGS SS+LSSNG E+ DD+K LHSDSE  RR KFEA
Sbjct: 194 GSTGNCPVCRKVFHAKDIEHVLSLVGSHSSNLSSNGTEITDDEKLLHSDSELTRRLKFEA 253

Query: 252 ILKLQEENSGLIEPKRDLVVLPGMFLPQPATLPTPTSTK-ETTEQEQGEQSAPAEINATG 310
           +LKLQEENSGLIEPK++ V++PGMFL +P   P   S K  T+EQ+Q +    +E +++G
Sbjct: 254 VLKLQEENSGLIEPKKNGVIVPGMFLQRPIAPPPALSAKGPTSEQQQRDAITFSETSSSG 313

Query: 311 SSNRASGSKHWNSGMRKRRGRN 332
           SS+RAS S+  N GMR+ R R 
Sbjct: 314 SSSRASTSEQRNLGMRRHRSRT 335

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806693|ref|NP_001241545.1| uncharacterized protein LOC100791789 [Glycine max] gi|255644864|gb|ACU22932.1| unknown [Glycine max]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 195/349 (55%), Positives = 255/349 (73%), Gaps = 25/349 (7%)

Query: 17  YGDECVVLDSYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIESKGLD 76
           YG +CV+L S+PPH H+ +KPRTADVSSQQFVEAV+ I+AS +YP+ PP +DL++ KGLD
Sbjct: 21  YGTDCVLLRSFPPHFHISLKPRTADVSSQQFVEAVLEIQASSQYPKEPPSVDLVDCKGLD 80

Query: 77  DQRQKHLISCIQDKAHELTSCLMLVALCEEAVAKLSAMNHPDGDCPLCLYPLFRKDKNVE 136
           +QR+K+L++CIQ KA+EL+ CLMLVALCEEA  KLS+MNHPDGDCPLCL+PL  +D+   
Sbjct: 81  EQRKKYLLNCIQSKAYELSPCLMLVALCEEAAEKLSSMNHPDGDCPLCLFPLVPEDQESG 140

Query: 137 VLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDM----RNQKDMLGPIDG 192
            LPFMKLMSCFHCFHSECI+RWW WLQN  + DS      NTD     RNQ D     + 
Sbjct: 141 TLPFMKLMSCFHCFHSECIIRWWKWLQNSNKVDSS-----NTDSAAAHRNQ-DNPKKTEE 194

Query: 193 NMGTCPVCRKVFHVKDLEHVLNLVGSQSSHLSSNGNEVDDDDKYLHSDSENIRRQKFEAI 252
           ++G CPVCRK F  KDL+HVL LVGS SS LSS+  E+++++K L S+ E  RRQK+EAI
Sbjct: 195 SVGNCPVCRKPFLAKDLDHVLALVGSYSSQLSSDNEELNEEEKLLQSEDEINRRQKYEAI 254

Query: 253 LKLQEENSGLIEPKRDLVVLPGMFLPQPATLPTPTSTKETTEQEQGEQSAPA-EINATGS 311
           L LQ+ENSGLIEPK+++V+LPGM+LPQP  +P+ T TKE+ E +Q +  A   E +A G+
Sbjct: 255 LNLQKENSGLIEPKKEMVILPGMYLPQPVAMPSSTPTKESDEPQQKDPPAVVPEKHAGGT 314

Query: 312 --SNRASGSKHWNSGMRKRRGRN-------LRN-----QRQWIRKDDSS 346
             S+  S S+  N G R+++ R+        RN     Q+QW+R+D+ S
Sbjct: 315 SNSSIPSSSRQRNFGARRQKARSDNHSSSTARNPRKPAQQQWVRRDNPS 363

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30695166|ref|NP_191589.3| ubiquitin-protein ligase RNF25 [Arabidopsis thaliana] gi|66865936|gb|AAY57602.1| RING finger family protein [Arabidopsis thaliana] gi|332646519|gb|AEE80040.1| ubiquitin-protein ligase RNF25 [Arabidopsis thaliana]

 Score =  353 bits (907), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 166/275 (60%), Positives = 209/275 (76%), Gaps = 2/275 (0%)

Query: 13  VQAVYGDECVVLDSYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES 72
           ++AVY ++CV+LDSYPPHLHL IKPRTA++SSQQFVEAV+  +A  KYP+ PPRI LIES
Sbjct: 13  LEAVYSEDCVILDSYPPHLHLHIKPRTAEISSQQFVEAVVRFQAGSKYPDEPPRISLIES 72

Query: 73  KGLDDQRQKHLISCIQDKAHELTSCLMLVALCEEAVAKLSAMNHPDGDCPLCLYPLFRKD 132
           KGLD+QRQK LI  +Q+KA +L+S LMLV LCEEAV +L+ MNHP+GDCPLCLYPLF +D
Sbjct: 73  KGLDEQRQKLLIGIVQEKASQLSSSLMLVELCEEAVERLTIMNHPEGDCPLCLYPLFPED 132

Query: 133 KNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCA--TVHPNTDMRNQKDMLGPI 190
              + +PFMKLMSCFHCFH ECI+RWWNWL    E DS +  T+H       ++   G  
Sbjct: 133 GGSKQMPFMKLMSCFHCFHCECIIRWWNWLHAQEEADSKSGDTLHMRRGSTAREGNSGSA 192

Query: 191 DGNMGTCPVCRKVFHVKDLEHVLNLVGSQSSHLSSNGNEVDDDDKYLHSDSENIRRQKFE 250
           D ++G CPVCRK+FH  D+EHVL+LVG+QSS   S+     D D  L SDSENIRR++FE
Sbjct: 193 DKSLGNCPVCRKIFHSSDIEHVLDLVGAQSSLQDSSLIPGKDQDPLLQSDSENIRRERFE 252

Query: 251 AILKLQEENSGLIEPKRDLVVLPGMFLPQPATLPT 285
           +ILK QEE  GL++PK+++ V+PGM+LP PA   T
Sbjct: 253 SILKTQEEKGGLVQPKKNISVVPGMYLPPPAHAST 287

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334186148|ref|NP_001190140.1| ubiquitin-protein ligase RNF25 [Arabidopsis thaliana] gi|332646520|gb|AEE80041.1| ubiquitin-protein ligase RNF25 [Arabidopsis thaliana]

 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 164/292 (56%), Positives = 207/292 (70%), Gaps = 19/292 (6%)

Query: 13  VQAVYGDECVVLDSYPPHLHLRIKPRTADVSS-----------------QQFVEAVIGIR 55
           ++AVY ++CV+LDSYPPHLHL IKPRTA++SS                   FVEAV+  +
Sbjct: 13  LEAVYSEDCVILDSYPPHLHLHIKPRTAEISSQQVFFSPQFFFFFFGCKNSFVEAVVRFQ 72

Query: 56  ASPKYPEHPPRIDLIESKGLDDQRQKHLISCIQDKAHELTSCLMLVALCEEAVAKLSAMN 115
           A  KYP+ PPRI LIESKGLD+QRQK LI  +Q+KA +L+S LMLV LCEEAV +L+ MN
Sbjct: 73  AGSKYPDEPPRISLIESKGLDEQRQKLLIGIVQEKASQLSSSLMLVELCEEAVERLTIMN 132

Query: 116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCA--T 173
           HP+GDCPLCLYPLF +D   + +PFMKLMSCFHCFH ECI+RWWNWL    E DS +  T
Sbjct: 133 HPEGDCPLCLYPLFPEDGGSKQMPFMKLMSCFHCFHCECIIRWWNWLHAQEEADSKSGDT 192

Query: 174 VHPNTDMRNQKDMLGPIDGNMGTCPVCRKVFHVKDLEHVLNLVGSQSSHLSSNGNEVDDD 233
           +H       ++   G  D ++G CPVCRK+FH  D+EHVL+LVG+QSS   S+     D 
Sbjct: 193 LHMRRGSTAREGNSGSADKSLGNCPVCRKIFHSSDIEHVLDLVGAQSSLQDSSLIPGKDQ 252

Query: 234 DKYLHSDSENIRRQKFEAILKLQEENSGLIEPKRDLVVLPGMFLPQPATLPT 285
           D  L SDSENIRR++FE+ILK QEE  GL++PK+++ V+PGM+LP PA   T
Sbjct: 253 DPLLQSDSENIRRERFESILKTQEEKGGLVQPKKNISVVPGMYLPPPAHAST 304

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817326|ref|XP_002876546.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297322384|gb|EFH52805.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  312 bits (799), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 151/267 (56%), Positives = 188/267 (70%), Gaps = 29/267 (10%)

Query: 13  VQAVYGDECVVLDSYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES 72
           ++AVYG++CV+LDSYPPHLHL IKPRTAD+SSQQFVEAV+ I+A  KYP+ PPRI LIES
Sbjct: 13  LEAVYGEDCVILDSYPPHLHLHIKPRTADISSQQFVEAVVRIQAGSKYPDEPPRITLIES 72

Query: 73  KGLDDQRQKHLISCIQDKAHELTSCLMLVALCEEAVAKLSAMNHPDGDCPLCLYPLFRKD 132
           KGLDDQRQKHL   +Q+KA +L+S LMLV LCEEAV +L+ MNHPDGDCPLCLYPLF ++
Sbjct: 73  KGLDDQRQKHLTGIVQEKAFQLSSSLMLVELCEEAVERLTIMNHPDGDCPLCLYPLFPEE 132

Query: 133 KNVEVLPFMKLMSCFHCFHSECIVRWWNWL--QNGIETDSCATVHPNTDMRNQKDMLGPI 190
              + +PFMKLMSCFHCFH +CI+RWWNWL  Q   ++ S  T H       ++D     
Sbjct: 133 DGSKQMPFMKLMSCFHCFHCDCIIRWWNWLHAQKDADSKSGDTSHMRRGSSTREDK---- 188

Query: 191 DGNMGTCPVCRKVFHVKDLEHVLNLVGSQSSHLSSNGNEVDDDDKYLHSDSENIRRQKFE 250
             ++G CPVCRK                      S   +  D D  L SDSENIRR++FE
Sbjct: 189 --SLGNCPVCRK---------------------DSGLIQGKDQDPLLQSDSENIRRERFE 225

Query: 251 AILKLQEENSGLIEPKRDLVVLPGMFL 277
           AILK QEE  GL++PK+++ V+PGM+L
Sbjct: 226 AILKTQEEKGGLVQPKKNISVVPGMYL 252

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|108864512|gb|ABA94379.2| RWD domain containing protein, expressed [Oryza sativa Japonica Group]

 Score =  311 bits (798), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 153/308 (49%), Positives = 213/308 (69%), Gaps = 15/308 (4%)

Query: 15  AVYGDECVVLDSYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIESKG 74
           +VYGD+C V+  +PPHL + ++PRTAD SSQQFVE  +GI+AS +YP+ PP +  +ESKG
Sbjct: 38  SVYGDDCRVVRGFPPHLVVHVRPRTADDSSQQFVELFLGIKASSQYPKAPPHVYAVESKG 97

Query: 75  LDDQRQKHLISCIQDKAHELTSCLMLVALCEEAVAKLSAMNHPDGDCPLCLYPLFRKDKN 134
           LD+ RQ +LIS IQ+KA EL+   MLV LCEEAV  LS MNHP GDCPLCLYPL  K+ +
Sbjct: 98  LDENRQVYLISSIQNKARELSCYPMLVTLCEEAVEMLSNMNHPAGDCPLCLYPLV-KEND 156

Query: 135 VEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNM 194
              LPFMKLMSC+HCFHS+CI+RWW WLQN       ++    T+ ++       +  + 
Sbjct: 157 GSALPFMKLMSCYHCFHSDCIMRWWEWLQNDDTDSKKSSTAATTEAKHHN-----VSQHK 211

Query: 195 GTCPVCRKVFHVKDLEHVLNLVGSQSSHLSSNGNEVDDDDK-YLHSDSENIRRQKFEAIL 253
           G CPVCRKVF  KD+EHV +L+G+ +S L+S   ++D+D+K  LHS+SE IR++KF ++ 
Sbjct: 212 GLCPVCRKVFDEKDIEHVRDLLGANTSQLASLSIDLDEDEKEVLHSESEKIRQEKFASLF 271

Query: 254 KLQEENSGLIEPKRDLVVLPGMFLPQPATLPTPT-------STKETTEQEQGEQSAPAEI 306
            LQ+E +GLIEPK+DL + PGM++P+P + PT +       S ++TT    G +    + 
Sbjct: 272 NLQQERNGLIEPKKDLSIQPGMYIPRPPSAPTASEGDTVDDSCEDTTTSTSGTEPL-NQT 330

Query: 307 NATGSSNR 314
           N+TG + +
Sbjct: 331 NSTGGTTK 338

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226499170|ref|NP_001148707.1| LOC100282323 [Zea mays] gi|195621552|gb|ACG32606.1| ubiquitin-protein ligase/ zinc ion binding protein [Zea mays] gi|219884689|gb|ACL52719.1| unknown [Zea mays] gi|413925312|gb|AFW65244.1| Ubiquitin-protein ligase/ zinc ion binding protein [Zea mays]

 Score =  310 bits (795), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 162/342 (47%), Positives = 225/342 (65%), Gaps = 21/342 (6%)

Query: 13  VQAVYGDECVVLDSYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES 72
           V AVYGD+  VL   PPHL + ++PRTAD +SQQFVE  +GI+AS +YP+ PP I  +ES
Sbjct: 21  VAAVYGDDVRVLRDLPPHLFVHVRPRTADDTSQQFVELFLGIKASSQYPKEPPHIYAVES 80

Query: 73  KGLDDQRQKHLISCIQDKAHELTSCLMLVALCEEAVAKLSAMNHPDGDCPLCLYPLFRKD 132
           KGLD+ RQ +LI+ IQ+KA+EL++C MLV LCEEA   LS MNHP GDCPLCLYPL  +D
Sbjct: 81  KGLDENRQIYLITSIQNKANELSNCPMLVTLCEEAGEILSNMNHPAGDCPLCLYPLMGED 140

Query: 133 KNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDG 192
           K    LPFMKLMSC+HCFHS+CI+RWW WLQ+G          PNT  ++       ++ 
Sbjct: 141 KVGSELPFMKLMSCYHCFHSDCIMRWWEWLQHG----DTNPKEPNTGDKHYN-----VNQ 191

Query: 193 NMGTCPVCRKVFHVKDLEHVLNLVGSQSSHLSSNGNEVDDDDK-YLHSDSENIRRQKFEA 251
             G CPVCRKVF  KD+EHV +L+G  +S L+S   ++ +D+K  LHS++E  RR++ E+
Sbjct: 192 PRGFCPVCRKVFDEKDIEHVRDLLGDNTSRLASLTVDLGEDEKELLHSEAEQNRRKRIES 251

Query: 252 ILKLQEENSGLIEPKRDLVVLPGMFLPQPATLPTPTSTKETTEQEQGEQSAPAEINATGS 311
           ++ LQ+E +GLIEPK+DL + PGM++  P + P  T+ +E  +  QG  ++ +E    G 
Sbjct: 252 LVNLQQELNGLIEPKKDLAIQPGMYVSVPPSTPD-TAEEENADPSQGTATSTSETEQRGQ 310

Query: 312 SNRASGSKHWNSG----------MRKRRGRNLRNQRQWIRKD 343
           ++ AS +K  N G           R+  G+    ++QW RK+
Sbjct: 311 ASNASSNKPKNPGHRRRNRANASRRQPHGQGQPARQQWQRKE 352

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	348
FB|FBgn0033884	374	CG13344 [Drosophila melanogast	0.623	0.580	0.276	3.4e-12
ZFIN|ZDB-GENE-040426-1581	513	rnf25 "ring finger protein 25"	0.482	0.327	0.296	7.5e-12
UNIPROTKB|F1P4G1	469	RNF25 "Uncharacterized protein	0.479	0.356	0.270	5e-11
MGI|MGI:1890215	456	Rnf25 "ring finger protein 25"	0.505	0.385	0.299	2.6e-10
RGD|1311557	454	Rnf25 "ring finger protein 25"	0.451	0.345	0.289	9.7e-10
UNIPROTKB|E2RE32	459	RNF25 "Uncharacterized protein	0.485	0.368	0.264	1.3e-09
UNIPROTKB|F1MWS4	458	RNF25 "E3 ubiquitin-protein li	0.482	0.366	0.264	1.7e-09
UNIPROTKB|Q5E9N3	458	RNF25 "E3 ubiquitin-protein li	0.482	0.366	0.259	1.4e-08
UNIPROTKB|Q96BH1	459	RNF25 "E3 ubiquitin-protein li	0.482	0.366	0.241	1.4e-08
UNIPROTKB|I3LCK8	470	LOC100739271 "Uncharacterized	0.474	0.351	0.268	7.3e-08

FB|FBgn0033884 CG13344 [Drosophila melanogaster (taxid:7227)]

 Score = 185 (70.2 bits), Expect = 3.4e-12, P = 3.4e-12
 Identities = 66/239 (27%), Positives = 100/239 (41%)

Query:    35 IKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIESKGLDDQRQKHLISCIQDKAHEL 94
             + P T +   QQ+V   + +  +P YPE  P   L+  +GLDD R + + S    K  E 
Sbjct:    36 VLPLTGEEEEQQYVCVTLQVHPTPGYPEESPTFKLLRPRGLDDARLEAIRSACNAKIKES 95

Query:    95 TSCLMLVALCEEAVAKLSAMNHPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSEC 154
                 ++  L E     LS  N P G C +CLY     D+      F +   CFH  HS C
Sbjct:    96 IGFPVVFDLIEVVREHLSGSNLPSGQCVVCLYGFADGDE------FTRT-ECFHYLHSYC 148

Query:   155 IVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCPVCRKVFHVKDLEHVLN 214
             + R  N L+   + +             QK      D     CPVCR+  H+ D    L 
Sbjct:   149 LARHLNALRRNYQEE-----FDKLPAWLQKTA----DPFQALCPVCRE--HIGDETDSLK 197

Query:   215 LVGSQSSHLSSNGNEVDDDDKYLHSD-SENIRRQKFE-AILKLQEENSGLI--EPKRDL 269
                  S  L++   +V ++ + +    SE   +QK   AI+ +  E S +I  E + D+
Sbjct:   198 CAMPPSELLNAPEFKVTEELRQMQQRMSELYLQQKSRGAIIDVNAEGSAVISIETEEDI 256

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-040426-1581 rnf25 "ring finger protein 25" [Danio rerio (taxid:7955)]

 Score = 176 (67.0 bits), Expect = 7.5e-12, Sum P(2) = 7.5e-12
 Identities = 54/182 (29%), Positives = 82/182 (45%)

Query:    33 LRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIESKGLDDQRQKHLISCIQDKAH 92
             L + P TA+    QFV   + +    +YP   P I +   +GL D +   L   +Q +A 
Sbjct:    36 LVLHPSTAEDCLSQFVRLTLTMDLDSQYPYSSPYISIHNPRGLSDDKLLSLQKSLQMEAE 95

Query:    93 ELTSCLMLVALCEEAVAKLSAMNHPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHS 152
             E     +L  L E A   L+  N P G+C +CLY      K  EV  F K  SC+H FHS
Sbjct:    96 ECVGTPVLYQLIERAKEILTDSNIPHGNCVICLYDF----KEGEV--FTKT-SCYHYFHS 148

Query:   153 ECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCPVCRKVFHVKDLEHV 212
              C+ R+    +  ++          T  R +++ L  +      CPVCR+     DL+ +
Sbjct:   149 HCLGRYITHSEMELKDRERELEEDKTRDRTEEEELAVV------CPVCRESL-TYDLDAL 201

Query:   213 LN 214
             L+
Sbjct:   202 LS 203

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1P4G1 RNF25 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 169 (64.5 bits), Expect = 5.0e-11, Sum P(2) = 5.0e-11
 Identities = 50/185 (27%), Positives = 81/185 (43%)

Query:    26 SYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIESKGLDDQRQKHLIS 85
             S P  + + + P TA     QFV   + +   P+YP   P I +   +GL D++ + ++ 
Sbjct:    43 SEPWEVSITLHPATAQDQDSQFVRCTLVLAVPPQYPIEAPDISISNPRGLSDEQIQKMLQ 102

Query:    86 CIQDKAHELTSCLMLVALCEEAVAKLSAMNHPDGDCPLCLYPLFRKDKNVEVLPFMKLMS 145
              +++ A       +L  L E+    L+  N P G C +CLY    ++       F K   
Sbjct:   103 TLRNVAEARLGTEVLYELIEKGKEILTDNNIPHGQCVICLYGFQEREA------FTKTQ- 155

Query:   146 CFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT-CPVCRKVF 204
             C+H FHS C+ R+   +++ I            + R Q     P    +G  CPVCR+  
Sbjct:   156 CYHYFHSHCLARYAQHMEDEILMQQ--------EEREQHLAPSPKQ-KVGVQCPVCRETL 206

Query:   205 HVKDL 209
              V DL
Sbjct:   207 -VYDL 210

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0051059 "NF-kappaB binding" evidence=IEA

GO:0051092 "positive regulation of NF-kappaB transcription factor activity" evidence=IEA

MGI|MGI:1890215 Rnf25 "ring finger protein 25" [Mus musculus (taxid:10090)]

 Score = 171 (65.3 bits), Expect = 2.6e-10, P = 2.6e-10
 Identities = 59/197 (29%), Positives = 86/197 (43%)

Query:    17 YGDECVVLDSY---PPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIESK 73
             Y DE  V+      P  + + + P TA+V   QFV   + +R   +YP   P+I +   +
Sbjct:    27 YLDELQVMKGNGRSPWEIFITLHPATAEVQDSQFVCFTLVLRIPVQYPHEVPQISIRNPR 86

Query:    74 GLDDQRQKHLIS-CIQDKAHELTSCLMLVALCEEAVAKLSAMNHPDGDCPLCLYPLFRKD 132
             GL D+ Q H IS  +   A E     ML  L E+    L+  N P G C +CLY    K+
Sbjct:    87 GLSDE-QIHKISQALGHVAKEGLGTAMLYELIEKGKEILTDNNIPHGQCVICLYGFQEKE 145

Query:   133 KNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDG 192
                    F K   C+H FH  C+ R+   ++  + T        +  +  QK  +G    
Sbjct:   146 A------FTKT-PCYHYFHCHCLARYIQHMEQELTTQEQEQERQHV-VTKQK-AVGV--- 193

Query:   193 NMGTCPVCRKVFHVKDL 209
                 CPVCR+   V DL
Sbjct:   194 ---QCPVCREPL-VYDL 206

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0016874 "ligase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051059 "NF-kappaB binding" evidence=ISO

GO:0051092 "positive regulation of NF-kappaB transcription factor activity" evidence=ISO

RGD|1311557 Rnf25 "ring finger protein 25" [Rattus norvegicus (taxid:10116)]

 Score = 166 (63.5 bits), Expect = 9.7e-10, P = 9.7e-10
 Identities = 49/169 (28%), Positives = 74/169 (43%)

Query:    17 YGDECVVLDSY---PPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIESK 73
             Y DE  V+      P  + + + P TA+V   QFV   + ++   +YP   P+I +   +
Sbjct:    27 YLDELQVMKGNGRSPWEIFITLHPATAEVQDSQFVCFTLVLQVPVQYPHEVPQISIRNPR 86

Query:    74 GLDDQRQKHLIS-CIQDKAHELTSCLMLVALCEEAVAKLSAMNHPDGDCPLCLYPLFRKD 132
             GL D+ Q H IS  +   A E     ML  L E+    L+  N P G C +CLY    K+
Sbjct:    87 GLSDE-QIHKISQALGHVAKEGLGTAMLYELIEKGKEILTDNNIPHGQCVICLYGFQEKE 145

Query:   133 KNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMR 181
                    F K   C+H FH  C+ R+   ++  + T      H  T  +
Sbjct:   146 A------FTKT-PCYHYFHCHCLARYIQHMEQELNTQEQEQQHVVTKQK 187

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0051059 "NF-kappaB binding" evidence=IEA;ISO

GO:0051092 "positive regulation of NF-kappaB transcription factor activity" evidence=IEA;ISO

UNIPROTKB|E2RE32 RNF25 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 165 (63.1 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 49/185 (26%), Positives = 81/185 (43%)

Query:    26 SYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIESKGLDDQRQKHLIS 85
             S P  +++ + P TA+  + Q+V   + ++   +YP   P+I +   +GL D+ Q H IS
Sbjct:    40 SSPWEIYITLHPATAEDQNSQYVCFTLVLQVPTQYPNEVPQISIRNPRGLSDE-QIHKIS 98

Query:    86 -CIQDKAHELTSCLMLVALCEEAVAKLSAMNHPDGDCPLCLYPLFRKDKNVEVLPFMKLM 144
               +   A+      ML  L E+    L+  N P G C +CLY    K+       F K  
Sbjct:    99 QALSHVANAGLGTAMLYELIEKGKEILTDNNIPHGQCVICLYDFQEKEA------FTKT- 151

Query:   145 SCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCPVCRKVF 204
              C+H FH  C+ R+   ++  ++               ++  +G        CPVCR+  
Sbjct:   152 PCYHYFHCHCLARYIQHMERELQAQGQEQEQERQHAATKQKAVGV------QCPVCREPL 205

Query:   205 HVKDL 209
              V DL
Sbjct:   206 -VYDL 209

GO:0008270 "zinc ion binding" evidence=IEA

GO:0051092 "positive regulation of NF-kappaB transcription factor activity" evidence=IEA

GO:0051059 "NF-kappaB binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|F1MWS4 RNF25 "E3 ubiquitin-protein ligase RNF25" [Bos taurus (taxid:9913)]

 Score = 164 (62.8 bits), Expect = 1.7e-09, P = 1.7e-09
 Identities = 49/185 (26%), Positives = 80/185 (43%)

Query:    26 SYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIESKGLDDQRQKHLIS 85
             S P  +++ + P TA+    Q+V   + ++   +YP   P+I +   +GL D+ Q H IS
Sbjct:    40 SSPWEIYITLHPATAEDQDSQYVCFTLVLQVPTQYPHEVPQISIRNPRGLSDE-QIHKIS 98

Query:    86 -CIQDKAHELTSCLMLVALCEEAVAKLSAMNHPDGDCPLCLYPLFRKDKNVEVLPFMKLM 144
               +   A       ML  L E+    L+  N P G C +CLY    K+       F K  
Sbjct:    99 QALSHVAEAGLGTAMLYELIEKGKEILTDNNIPHGQCVICLYGFQEKEA------FTKT- 151

Query:   145 SCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCPVCRKVF 204
              C+H FH  C+ R+   +++ ++           +   ++    P       CPVCR+  
Sbjct:   152 PCYHYFHCHCLARYIQHMEHELQAQG-------REREQERQHAAPEQAVGVQCPVCREPL 204

Query:   205 HVKDL 209
              V DL
Sbjct:   205 -VYDL 208

GO:0051092 "positive regulation of NF-kappaB transcription factor activity" evidence=IEA

GO:0051059 "NF-kappaB binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q5E9N3 RNF25 "E3 ubiquitin-protein ligase RNF25" [Bos taurus (taxid:9913)]

 Score = 156 (60.0 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 48/185 (25%), Positives = 79/185 (42%)

Query:    26 SYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIESKGLDDQRQKHLIS 85
             S P  +++ + P TA+    Q+V   + ++   +YP   P+I +   +GL D+ Q H IS
Sbjct:    40 SSPWEIYITLHPATAEDQDSQYVCFTLVLQVPTQYPHEVPQISIRNPRGLSDE-QIHKIS 98

Query:    86 -CIQDKAHELTSCLMLVALCEEAVAKLSAMNHPDGDCPLCLYPLFRKDKNVEVLPFMKLM 144
               +   A       ML  L E+    L+  N P G C +CLY    K+       F K  
Sbjct:    99 QALSHVAEAGLGTAMLYELIEKGKEILTDNNIPHGQCVICLYGFQEKEA------FTKT- 151

Query:   145 SCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCPVCRKVF 204
              C+H F   C+ R+   +++ ++           +   ++    P       CPVCR+  
Sbjct:   152 PCYHYFRCHCLARYIQHMEHELQAQG-------REREQERQHAAPEQAVGVQCPVCREPL 204

Query:   205 HVKDL 209
              V DL
Sbjct:   205 -VYDL 208

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0051059 "NF-kappaB binding" evidence=ISS

GO:0051092 "positive regulation of NF-kappaB transcription factor activity" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q96BH1 RNF25 "E3 ubiquitin-protein ligase RNF25" [Homo sapiens (taxid:9606)]

 Score = 156 (60.0 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 44/182 (24%), Positives = 77/182 (42%)

Query:    28 PPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIESKGLDDQRQKHLISCI 87
             P  +++ + P TA+    Q+V   + ++   +YP   P+I +   +GL D++   ++  +
Sbjct:    42 PWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNPRGLSDEQIHTILQVL 101

Query:    88 QDKAHELTSCLMLVALCEEAVAKLSAMNHPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCF 147
                A       ML  L E+    L+  N P G C +CLY    K+       F K   C+
Sbjct:   102 GHVAKAGLGTAMLYELIEKGKEILTDNNIPHGQCVICLYGFQEKEA------FTKT-PCY 154

Query:   148 HCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCPVCRKVFHVK 207
             H FH  C+ R+   ++  ++               ++  +G        CPVCR+   V 
Sbjct:   155 HYFHCHCLARYIQHMEQELKAQGQEQEQERQHATTKQKAVGV------QCPVCREPL-VY 207

Query:   208 DL 209
             DL
Sbjct:   208 DL 209

GO:0008270 "zinc ion binding" evidence=IEA

GO:0051092 "positive regulation of NF-kappaB transcription factor activity" evidence=IDA

GO:0051059 "NF-kappaB binding" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

UNIPROTKB|I3LCK8 LOC100739271 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 150 (57.9 bits), Expect = 7.3e-08, P = 7.3e-08
 Identities = 50/186 (26%), Positives = 79/186 (42%)

Query:    26 SYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIESKGLDDQRQKHLIS 85
             S P  + + + P TA+    Q+V   + ++    YP   P+I +   +GL D+ Q H IS
Sbjct:    40 SSPWEISITLHPATAEDQDSQYVCFTLVLQV---YPHEVPQISIRNPRGLSDE-QIHKIS 95

Query:    86 -CIQDKAHELTSCLMLVALCEEAVAKLSAMNHPDGDCPLCLYPLFRKDKNVEVLPFMKLM 144
               +   A       ML  L E+    L+  N P G C +CLY    K+       F K  
Sbjct:    96 QALSHVAEAGLGAAMLYELIEKGKEILTDNNIPHGQCVICLYGFQEKEA------FTKT- 148

Query:   145 SCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT-CPVCRKV 203
              C+H FH  C+ R+   +++ ++           +   Q+         +G  CPVCR+ 
Sbjct:   149 PCYHYFHCHCLARYIQHMEHELQAQG-------REQEQQRQHAAAKQKAVGVQCPVCREP 201

Query:   204 FHVKDL 209
               V DL
Sbjct:   202 L-VYDL 206

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	348
pfam05773	113	pfam05773, RWD, RWD domain	8e-19
smart00591	107	smart00591, RWD, domain in RING finger and WD repe	9e-18
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	2e-04
PHA02929	238	PHA02929, PHA02929, N1R/p28-like protein; Provisio	4e-04
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	0.001
pfam12861	85	pfam12861, zf-Apc11, Anaphase-promoting complex su	0.004

>gnl|CDD|218742 pfam05773, RWD, RWD domain

 Score = 80.4 bits (199), Expect = 8e-19
 Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 2/109 (1%)

Query: 1   MAEEEVAMELEAVQAVYGDEC--VVLDSYPPHLHLRIKPRTADVSSQQFVEAVIGIRASP 58
            ++E    ELEA++++Y DE    V +S PP   +++K  T++  S   V  V+      
Sbjct: 1   ESKELQEEELEALESIYPDEFEDEVKESSPPTFTIKLKLLTSEAESSPLVSLVLTFTLPE 60

Query: 59  KYPEHPPRIDLIESKGLDDQRQKHLISCIQDKAHELTSCLMLVALCEEA 107
            YP+ PP+I L     L DQ +  L+  +++ A E    +M+  L E  
Sbjct: 61  DYPDEPPKISLSSPWLLRDQDKLQLLKELEELAEENLGEVMIFELIEWL 109

This domain was identified in WD40 repeat proteins and Ring finger domain proteins. The function of this domain is unknown. GCN2 is the alpha-subunit of the only translation initiation factor (eIF2 alpha) kinase that appears in all eukaryotes. Its function requires an interaction with GCN1 via the domain at its N-terminus, which is termed the RWD domain after three major RWD-containing proteins: RING finger-containing proteins, WD-repeat-containing proteins, and yeast DEAD (DEXD)-like helicases. The structure forms an alpha + beta sandwich fold consisting of two layers: a four-stranded antiparallel beta-sheet, and three side-by-side alpha-helices. Length = 113

>gnl|CDD|214735 smart00591, RWD, domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain

 Score = 77.4 bits (191), Expect = 9e-18
 Identities = 29/105 (27%), Positives = 55/105 (52%), Gaps = 1/105 (0%)

Query: 9   ELEAVQAVYGDECVVLDSYPPHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRI 67
           ELEA++++Y ++  V+D       + IK   ++D    Q+V   + ++    YP+  P I
Sbjct: 1   ELEALESIYPEDFEVIDEDARIPEITIKLSPSSDEGEDQYVSLTLQVKLPENYPDEAPPI 60

Query: 68  DLIESKGLDDQRQKHLISCIQDKAHELTSCLMLVALCEEAVAKLS 112
            L+ S+GL D++   L+  +++ A E    +M+  L E+    LS
Sbjct: 61  SLLNSEGLSDEQLAELLKKLEEIAEENLGEVMIFELVEKLQEFLS 105

Length = 107

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 7/40 (17%)

Query: 119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRW 158
            +CP+CL      ++       + ++ C H FH EC+ +W
Sbjct: 1   DECPICLDEFEPGEE-------VVVLPCGHVFHKECLDKW 33

Length = 46

>gnl|CDD|222944 PHA02929, PHA02929, N1R/p28-like protein; Provisional

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 25/113 (22%), Positives = 40/113 (35%), Gaps = 38/113 (33%)

Query: 92  HELTSCLMLVALCEEAVAKLSAMNHPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFH 151
            +    +  V    E +   S     D +C +C+  ++  DK ++ + F  L +C H F 
Sbjct: 152 KKFLKTIPSVLSEYEKLYNRSK----DKECAICMEKVY--DKEIKNMYFGILSNCNHVFC 205

Query: 152 SECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCPVCRKVF 204
            ECI  W                      + +K+          TCPVCR  F
Sbjct: 206 IECIDIW----------------------KKEKN----------TCPVCRTPF 226

Length = 238

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 36.3 bits (84), Expect = 0.001
 Identities = 16/85 (18%), Positives = 22/85 (25%), Gaps = 40/85 (47%)

Query: 120 DCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTD 179
           +CP+CL               + L+ C H F   CI +W                     
Sbjct: 1   ECPICLEEFREP---------VVLLPCGHVFCRSCIDKWLK------------------- 32

Query: 180 MRNQKDMLGPIDGNMGTCPVCRKVF 204
                           TCP+CR   
Sbjct: 33  ------------SGKNTCPLCRTPI 45

Length = 45

>gnl|CDD|193335 pfam12861, zf-Apc11, Anaphase-promoting complex subunit 11 RING-H2 finger

 Score = 35.9 bits (83), Expect = 0.004
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 37/91 (40%)

Query: 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPN 177
           DG CP C +P      +  ++       C H FH  CI++W       + T         
Sbjct: 32  DGTCPQCKFP----GDDCPLV----WGKCKHNFHMHCILKW-------LAT--------- 67

Query: 178 TDMRNQKDMLGPIDGNMGTCPVCRKVFHVKD 208
                        + + G CP+CR+ F   +
Sbjct: 68  -------------ETSKGLCPMCRQTFVFAE 85

Apc11 is one of the subunits of the anaphase-promoting complex or cyclosome. The APC subunits are cullin family proteins with ubiquitin ligase activity. Polyubiquitination marks proteins for degradation by the 26S proteasome and is carried out by a cascade of enzymes that includes ubiquitin-activating enzymes (E1s), ubiquitin-conjugating enzymes (E2s), and ubiquitin ligases (E3s). Apc11 acts as an E3 enzyme and is responsible for recruiting E2s to the APC and for mediating the subsequent transfer of ubiquitin to APC substrates in vivo. In Saccharomyces cerevisiae this RING-H2 finger protein defines the minimal ubiquitin ligase activity of the APC, and the integrity of the RING-H2 finger is essential for budding yeast cell viability. Length = 85

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	348
KOG4445	368	consensus Uncharacterized conserved protein, conta	100.0
smart00591	107	RWD domain in RING finger and WD repeat containing	99.7
PF05773	113	RWD: RWD domain; InterPro: IPR006575 The RWD eukar	99.67
KOG4018	215	consensus Uncharacterized conserved protein, conta	99.61
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	99.44
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	99.26
COG5219	1525	Uncharacterized conserved protein, contains RING Z	99.23
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	99.02
PHA02929	238	N1R/p28-like protein; Provisional	98.98
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	98.98
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	98.96
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.94
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	98.86
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	98.83
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	98.83
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.83
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	98.72
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.67
PHA02926	242	zinc finger-like protein; Provisional	98.62
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.61
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.61
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.59
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	98.55
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.51
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.5
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	98.48
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.48
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	98.42
PF14634	44	zf-RING_5: zinc-RING finger domain	98.35
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	98.3
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	98.28
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	98.28
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.25
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	98.25
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.23
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.23
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	98.2
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	98.2
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	98.13
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	97.93
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	97.92
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	97.87
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	97.85
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	97.84
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	97.83
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.68
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	97.65
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	97.55
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	97.48
KOG0825	1134	consensus PHD Zn-finger protein [General function	97.39
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	97.34
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	97.29
KOG3970	299	consensus Predicted E3 ubiquitin ligase [Posttrans	97.29
KOG1002	791	consensus Nucleotide excision repair protein RAD16	97.16
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	96.99
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	96.79
KOG1952	950	consensus Transcription factor NF-X1, contains NFX	96.78
KOG2660	331	consensus Locus-specific chromosome binding protei	96.73
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	96.68
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	96.47
KOG3268	234	consensus Predicted E3 ubiquitin ligase [Posttrans	96.27
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	96.26
COG5222	427	Uncharacterized conserved protein, contains RING Z	95.91
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	95.89
KOG2034	911	consensus Vacuolar sorting protein PEP3/VPS18 [Int	95.87
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	95.83
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	95.75
COG5152	259	Uncharacterized conserved protein, contains RING a	95.73
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.36
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	95.24
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	95.19
KOG0297	391	consensus TNF receptor-associated factor [Signal t	95.18
PLN00172	147	ubiquitin conjugating enzyme; Provisional	94.78
KOG4739	233	consensus Uncharacterized protein involved in syna	94.74
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	94.67
PHA02862	156	5L protein; Provisional	94.66
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	94.33
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	94.33
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	94.28
PF04641	260	Rtf2: Rtf2 RING-finger	93.89
KOG3039	303	consensus Uncharacterized conserved protein [Funct	93.87
KOG1812	384	consensus Predicted E3 ubiquitin ligase [Posttrans	93.78
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	93.51
PHA03096	284	p28-like protein; Provisional	93.37
PTZ00390	152	ubiquitin-conjugating enzyme; Provisional	93.25
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	93.19
KOG3053	293	consensus Uncharacterized conserved protein [Funct	92.64
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	92.56
KOG0421	175	consensus Ubiquitin-protein ligase [Posttranslatio	92.55
PHA02825	162	LAP/PHD finger-like protein; Provisional	92.37
KOG3002	299	consensus Zn finger protein [General function pred	92.03
KOG1001	674	consensus Helicase-like transcription factor HLTF/	91.93
COG5078	153	Ubiquitin-protein ligase [Posttranslational modifi	91.64
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	91.57
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	91.55
KOG1940	276	consensus Zn-finger protein [General function pred	91.34
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	91.08
COG5175	480	MOT2 Transcriptional repressor [Transcription]	90.98
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	90.47
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	90.47
cd00195	141	UBCc Ubiquitin-conjugating enzyme E2, catalytic (U	90.32
PF00179	140	UQ_con: Ubiquitin-conjugating enzyme; InterPro: IP	89.99
smart00212	145	UBCc Ubiquitin-conjugating enzyme E2, catalytic do	89.45
KOG3800	300	consensus Predicted E3 ubiquitin ligase containing	89.39
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	89.23
KOG0417	148	consensus Ubiquitin-protein ligase [Posttranslatio	89.12
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	88.64
KOG3899	381	consensus Uncharacterized conserved protein [Funct	87.89
KOG0801	205	consensus Predicted E3 ubiquitin ligase [Posttrans	87.81
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	86.98
KOG0298	1394	consensus DEAD box-containing helicase-like transc	86.32
KOG1829	580	consensus Uncharacterized conserved protein, conta	86.15
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	85.06
COG5183	1175	SSM4 Protein involved in mRNA turnover and stabili	84.44
COG5236	493	Uncharacterized conserved protein, contains RING Z	83.48
KOG4362	684	consensus Transcriptional regulator BRCA1 [Replica	83.3
PF03854	50	zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc	82.65
KOG0416	189	consensus Ubiquitin-protein ligase [Posttranslatio	82.09
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	81.54
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	80.74
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	80.25

>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=100.00  E-value=6.9e-41  Score=307.31  Aligned_cols=231  Identities=21%  Similarity=0.406  Sum_probs=179.9

Q ss_pred             HHHHHHHhhcCCCceeccCCCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCCCCCCHHHHHHHHHHH
Q 018975            8 MELEAVQAVYGDECVVLDSYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIESKGLDDQRQKHLISCI   87 (348)
Q Consensus         8 ~ElEAL~sIY~dd~~v~~~~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~~GL~~~~i~~L~~~L   87 (348)
                      .|++||.+|+..- .+-+..+..++++++|.++++.++++|+|+|.+..+++||.++|.|.++++|||++.++..|++.+
T Consensus         6 ~e~~~ld~i~~~~-~~~s~~~~~i~~t~hpit~eedesqyvcvtl~m~vs~gYP~esPtvtl~nPRGl~d~~~~~i~~~~   84 (368)
T KOG4445|consen    6 GEIEALDSIWDGV-HVESKLEASIRYTKHPITSEEDESQYVCVTLEMTVSEGYPAESPTVTLSNPRGLGDPEFREIQRQI   84 (368)
T ss_pred             hhhHhhhhHhhcc-CCCCCChhhheeeecccccccccceeEEEEEEEecCCCCCCcCCceEecCCCCCCcHHHHHHHHHH
Confidence            4677777776642 233445678999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCchhhHHHHHHHHHhhhCCCCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcc
Q 018975           88 QDKAHELTSCLMLVALCEEAVAKLSAMNHPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIE  167 (348)
Q Consensus        88 ~~~~ee~~G~~ml~elie~~kE~Lte~n~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~  167 (348)
                      .+++++++|++|+|+||+..+++|+++|.+.++|+||||+|...+.      |++ |.||||||++||+||++++.+++.
T Consensus        85 ~~iikq~~g~pii~~lie~~~e~LT~nn~p~gqCvICLygfa~~~~------ft~-T~C~Hy~H~~ClaRyl~~~~~~lr  157 (368)
T KOG4445|consen   85 QEIIKQNSGMPIICQLIEHCSEFLTENNHPNGQCVICLYGFASSPA------FTV-TACDHYMHFACLARYLTECLTGLR  157 (368)
T ss_pred             HHHHHhcCCCchhHHHHHHHHHHcccCCCCCCceEEEEEeecCCCc------eee-ehhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999987664      886 999999999999999998765442


Q ss_pred             cccccccCCCcccccccccCCCCCCCCCCCCCCCcccCccchHHHHhhhcCCCCCCCCCCCCCCccccccCChhH--HHH
Q 018975          168 TDSCATVHPNTDMRNQKDMLGPIDGNMGTCPVCRKVFHVKDLEHVLNLVGSQSSHLSSNGNEVDDDDKYLHSDSE--NIR  245 (348)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CPvCR~~~~~~d~~~~~~l~~~~~~~~~s~~~e~~~~~~~~~~~~~--~~~  245 (348)
                               .+..+++++.+..+.....+|||||+.|-.+ ..   .+..+.-   .  +.-+    .+.+...+  +..
T Consensus       158 ---------qe~q~~~~~~qh~~~~~eavcpVcre~i~~e-~~---slk~a~~---P--t~~l----~~~~~~~eslrq~  215 (368)
T KOG4445|consen  158 ---------QEIQDAQKERQHMKEQVEAVCPVCRERIKIE-EN---SLKIAEF---P--TYPM----ELYQPSAESLRQQ  215 (368)
T ss_pred             ---------HHHHHHHHHHHHhhhhHhhhhhHhhhhcccc-cc---ceeccCC---C--cccc----ccCcccHHHHHHH
Confidence                     2334444444445556677899999998442 11   1111000   0  0000    12222233  444


Q ss_pred             HHHHHHHHHHHHhcCCccccCccc
Q 018975          246 RQKFEAILKLQEENSGLIEPKRDL  269 (348)
Q Consensus       246 q~~~~~i~~~Q~~~ggiId~~~~~  269 (348)
                      ++++ .+|.+||++|||||.+++.
T Consensus       216 ~~r~-~ly~~qk~rg~iid~~ae~  238 (368)
T KOG4445|consen  216 EERK-RLYQRQQERGGIIDLEAER  238 (368)
T ss_pred             HHHH-HHHHHHhhcCceEeeeccC
Confidence            4566 9999999999999998765

>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain

Probab=99.70  E-value=1.5e-16  Score=128.89  Aligned_cols=104  Identities=26%  Similarity=0.513  Sum_probs=91.4

Q ss_pred             HHHHHHhhcCCCceeccCCCC--eeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCCCCCCHHHHHHHHHH
Q 018975            9 ELEAVQAVYGDECVVLDSYPP--HLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIESKGLDDQRQKHLISC   86 (348)
Q Consensus         9 ElEAL~sIY~dd~~v~~~~~~--~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~~GL~~~~i~~L~~~   86 (348)
                      |+|||+|||++++..+...+.  .|.|++.+... +.....+.+.|.|.+|++||..+|.|.+.+..||+......|.+.
T Consensus         1 EieaL~sIy~~~~~~~~~~~~~~~~~i~l~~~~~-~~~~~~~~~~l~~~~p~~YP~~~P~i~~~~~~~l~~~~~~~l~~~   79 (107)
T smart00591        1 ELEALESIYPEDFEVIDEDARIPEITIKLSPSSD-EGEDQYVSLTLQVKLPENYPDEAPPISLLNSEGLSDEQLAELLKK   79 (107)
T ss_pred             ChHHHHhhccceeEEecCCCCccEEEEEEecCCC-CCCccceEEEEEEECCCCCCCCCCCeEEECCCCCCHHHHHHHHHH
Confidence            799999999999887776555  68888866543 234567899999999999999999999988889999999999999


Q ss_pred             HHHHHHHhcCCchhhHHHHHHHHHhhh
Q 018975           87 IQDKAHELTSCLMLVALCEEAVAKLSA  113 (348)
Q Consensus        87 L~~~~ee~~G~~ml~elie~~kE~Lte  113 (348)
                      +...+++..|++|+|.+++++++++.+
T Consensus        80 l~~~~~e~~g~~~if~~v~~~~e~l~~  106 (107)
T smart00591       80 LEEIAEENLGEVMIFELVEKLQEFLSE  106 (107)
T ss_pred             HHHHHHHhCCCEEhhHHHHHHHHHHhc
Confidence            999999999999999999999999864

>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO)

Probab=99.67  E-value=1.6e-16  Score=129.72  Aligned_cols=110  Identities=25%  Similarity=0.432  Sum_probs=88.3

Q ss_pred             CHHHHHHHHHHHHhhcCCCce-eccCCCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCCCCCCHHHH
Q 018975            2 AEEEVAMELEAVQAVYGDECV-VLDSYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIESKGLDDQRQ   80 (348)
Q Consensus         2 ~~Ee~~~ElEAL~sIY~dd~~-v~~~~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~~GL~~~~i   80 (348)
                      ..|+|++||+||+|||++++. .....+..+.+.+.+.........++.+.|.|.+|++||..+|.|.+....++.....
T Consensus         2 ~~e~~~~EieaL~sIy~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~~~~~~~~   81 (113)
T PF05773_consen    2 CEEQQEEEIEALQSIYPDDFIEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPKNSRNEQI   81 (113)
T ss_dssp             HHHHHHHHHHHHHHHSSSSESSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEESSSHCHHH
T ss_pred             CHHHHHHHHHHHHHHcCCCccccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCCCCCHHHH
Confidence            368899999999999999982 2334456788888654444455678899999999999999999999988877776889


Q ss_pred             HHHHHHHHHHHHHhc-CCchhhHHHHHHHHHh
Q 018975           81 KHLISCIQDKAHELT-SCLMLVALCEEAVAKL  111 (348)
Q Consensus        81 ~~L~~~L~~~~ee~~-G~~ml~elie~~kE~L  111 (348)
                      ..|.+.|...+++.. |++|+|++++++++++
T Consensus        82 ~~l~~~l~~~~~~~~~G~~~i~~ii~~~qe~~  113 (113)
T PF05773_consen   82 EKLNKELEQIAEENRQGEPCIFQIIEWLQENL  113 (113)
T ss_dssp             HHHHHHHHHHHHHSTTTS-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcCHHHHHHHHHHhhC
Confidence            999999999999999 9999999999999875

; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.

>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=99.61  E-value=5.6e-15  Score=131.53  Aligned_cols=111  Identities=24%  Similarity=0.405  Sum_probs=91.8

Q ss_pred             CC-HHHHHHHHHHHHhhcCCCceec-cCCCCeeEEEEecCCCCCCCCcce-EEEEEEEcCCCCCCCCCcccccCCCCCCH
Q 018975            1 MA-EEEVAMELEAVQAVYGDECVVL-DSYPPHLHLRIKPRTADVSSQQFV-EAVIGIRASPKYPEHPPRIDLIESKGLDD   77 (348)
Q Consensus         1 m~-~Ee~~~ElEAL~sIY~dd~~v~-~~~~~~~~i~i~p~~~~~~~~~~v-~i~L~i~lp~~YP~~~P~i~i~~~~GL~~   77 (348)
                      |+ .|+|+.|+|||+|||+|+++.+ ...|+.|.|.|.+..+..  ..+. .+.|.|.++++||+.+|.|.+...+++.+
T Consensus         1 Ms~~EeQe~E~EaLeSIY~de~~~i~~~~~~~f~v~iq~e~~e~--d~~~~~~~l~~s~tEnYPDe~Pli~~~~~~~~~~   78 (215)
T KOG4018|consen    1 MSQYEEQEEELEALESIYPDEFKHINSEDPPIFEVTIQYEEGEN--DEPKGSFILVFSLTENYPDEAPLIEAFENENLED   78 (215)
T ss_pred             CCcHHHHHHHHHHHHHhccchhhhhhccCCccceeeeecccccC--CCccccEEEEEEccCCCCCCCcceeccccccccH
Confidence            55 3789999999999999999444 556667777776654332  1233 79999999999999999999888999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhhh
Q 018975           78 QRQKHLISCIQDKAHELTSCLMLVALCEEAVAKLSA  113 (348)
Q Consensus        78 ~~i~~L~~~L~~~~ee~~G~~ml~elie~~kE~Lte  113 (348)
                      ..+..++..+...+++++||.|+|.|++.+++.+.+
T Consensus        79 ~~i~~i~~~l~~~aeenLGmaMiftLvss~ke~l~e  114 (215)
T KOG4018|consen   79 AEIEGILEKLQQEAEENLGMAMIFTLVSSAKEELNE  114 (215)
T ss_pred             HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999666665543

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.44  E-value=3.4e-13  Score=130.07  Aligned_cols=147  Identities=18%  Similarity=0.272  Sum_probs=90.1

Q ss_pred             CCHHHHHHHHHHHHhhcCCC-ceeccC-C----------CCeeEEEEecCCCC----CCC-------CcceEEEEEEEcC
Q 018975            1 MAEEEVAMELEAVQAVYGDE-CVVLDS-Y----------PPHLHLRIKPRTAD----VSS-------QQFVEAVIGIRAS   57 (348)
Q Consensus         1 m~~Ee~~~ElEAL~sIY~dd-~~v~~~-~----------~~~~~i~i~p~~~~----~~~-------~~~v~i~L~i~lp   57 (348)
                      |+.+.|++||+||++||+++ |.-.+. .          +..|.+.+.|....    +..       .....+.|.|.||
T Consensus         4 dn~~~qedEL~AL~siy~e~~~~~~~~~~~~~~~ir~ni~v~f~~~~~~~vnie~~s~~~~~f~~~~~~lPpivlkf~LP   83 (445)
T KOG1814|consen    4 DNRELQEDELEALESIYPENEFRKVSYWEDGEFEIRLNIEVNFEILYSPKVNIEGTSDSMDLFSLPLDHLPPIVLKFHLP   83 (445)
T ss_pred             hHHHHHHHHHHHHHHhccccccccccccccccceeEeeeeccceeecccccccccccccccccccccccCCCeeeeeecC
Confidence            34577999999999999976 222211 1          11223333332211    111       1345689999999


Q ss_pred             CCCCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHH----H-----------------------
Q 018975           58 PKYPEHPPRIDLIESKGLDDQRQKHLISCIQDKAHELTSCLMLVALCEEAVA----K-----------------------  110 (348)
Q Consensus        58 ~~YP~~~P~i~i~~~~GL~~~~i~~L~~~L~~~~ee~~G~~ml~elie~~kE----~-----------------------  110 (348)
                      +.||..+|+.....+.||+.+++..|...      +..|....+++.+++.+    +                       
T Consensus        84 ~~YPs~spP~f~l~s~Wmn~~q~~~lc~~------el~~i~~~~q~m~~l~~~~~s~l~~i~~~~lki~~~~~~~~~~~~  157 (445)
T KOG1814|consen   84 NDYPSVSPPKFELKSYWMNPDQKSALCSK------ELRLIEELNQMMDFLKESTISILNLIAPFELKIISQKEFPALIRQ  157 (445)
T ss_pred             CccccCCCCceeeehcccCHHHhhhccch------hhccceeHHHHHHHHHHHHHHHHHhcccceeccchhhhccccccc
Confidence            99999877777778889999987766664      11111111111111110    0                       


Q ss_pred             -------------------hhhCCCCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975          111 -------------------LSAMNHPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN  160 (348)
Q Consensus       111 -------------------Lte~n~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~  160 (348)
                                         +........+|.||++.+...+.      |. .++|.|+||..|+..|+.
T Consensus       158 ~~~~~sl~~~Il~~deea~~~~F~~slf~C~ICf~e~~G~~c------~~-~lpC~Hv~Ck~C~kdY~~  219 (445)
T KOG1814|consen  158 GESIDSLKKEILQFDEEATLEKFVNSLFDCCICFEEQMGQHC------FK-FLPCSHVFCKSCLKDYFT  219 (445)
T ss_pred             ccChHHHHHHHHhhhHHHHHHHHHhhcccceeeehhhcCcce------ee-ecccchHHHHHHHHHHHH
Confidence                               11112445799999998764332      55 499999999999999987

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=99.26  E-value=1.5e-12  Score=89.27  Aligned_cols=35  Identities=34%  Similarity=0.916  Sum_probs=28.7

Q ss_pred             CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975          119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN  160 (348)
Q Consensus       119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~  160 (348)
                      ++|+||++.|..++.      ++ .++|+|.||..||..|++
T Consensus         1 d~C~IC~~~~~~~~~------~~-~l~C~H~fh~~Ci~~~~~   35 (44)
T PF13639_consen    1 DECPICLEEFEDGEK------VV-KLPCGHVFHRSCIKEWLK   35 (44)
T ss_dssp             -CETTTTCBHHTTSC------EE-EETTSEEEEHHHHHHHHH
T ss_pred             CCCcCCChhhcCCCe------EE-EccCCCeeCHHHHHHHHH
Confidence            379999999976543      33 378999999999999986

...

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=99.23  E-value=3.6e-11  Score=125.25  Aligned_cols=122  Identities=19%  Similarity=0.373  Sum_probs=101.3

Q ss_pred             EEEEEEEcCCCCCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhhhCCCCCCCCCcccccc
Q 018975           49 EAVIGIRASPKYPEHPPRIDLIESKGLDDQRQKHLISCIQDKAHELTSCLMLVALCEEAVAKLSAMNHPDGDCPLCLYPL  128 (348)
Q Consensus        49 ~i~L~i~lp~~YP~~~P~i~i~~~~GL~~~~i~~L~~~L~~~~ee~~G~~ml~elie~~kE~Lte~n~~~~~C~ICl~~f  128 (348)
                      .+.+-|.+|.+||...-.+.-....|.++..+..++..-+.......|.  +.++.+..+.++.....+..+|+||..-+
T Consensus      1402 kle~~ikiPs~YPl~NvQVeGi~rVg~sE~~wkswI~~~q~~~~~~ngs--~~D~l~l~kkNi~~~fsG~eECaICYsvL 1479 (1525)
T COG5219        1402 KLEALIKIPSGYPLKNVQVEGIKRVGTSEIGWKSWINLRQNEMIKKNGS--FMDLLGLWKKNIDEKFSGHEECAICYSVL 1479 (1525)
T ss_pred             EEEEEEecCCCCCcccceeccceeccccHHHHHHHHHHHHHHHHhccch--HHHHHHHHHhhhhhhcCCcchhhHHHHHH
Confidence            5788999999999998888877888999999999999888877777776  55666777777777667788999999887


Q ss_pred             ccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCCCCCcccC
Q 018975          129 FRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCPVCRKVFH  205 (348)
Q Consensus       129 ~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CPvCR~~~~  205 (348)
                      .   -+++++|-.++-.|.|-||..||.+|+.                              +....+||+||-.|+
T Consensus      1480 ~---~vdr~lPskrC~TCknKFH~~CLyKWf~------------------------------Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1480 D---MVDRSLPSKRCATCKNKFHTRCLYKWFA------------------------------SSARSNCPLCRSEIT 1523 (1525)
T ss_pred             H---HHhccCCccccchhhhhhhHHHHHHHHH------------------------------hcCCCCCCccccccc
Confidence            5   3556788888889999999999999986                              135678999997764

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.02  E-value=1.7e-10  Score=87.79  Aligned_cols=44  Identities=30%  Similarity=0.642  Sum_probs=30.6

Q ss_pred             CCCCCCCccccccccCCC----CccccCcccccCCCCcccHHHHHHHHH
Q 018975          116 HPDGDCPLCLYPLFRKDK----NVEVLPFMKLMSCFHCFHSECIVRWWN  160 (348)
Q Consensus       116 ~~~~~C~ICl~~f~~~~~----~~~~~p~~k~~~C~H~FH~~Cl~~w~~  160 (348)
                      ...+.|+||+..|.+.-.    .....+++ ...|+|.||.+||.+|++
T Consensus        17 ~~~d~C~IC~~~l~~~~~~~~~~~~~~~i~-~~~C~H~FH~~Ci~~Wl~   64 (73)
T PF12678_consen   17 IADDNCAICREPLEDPCPECQAPQDECPIV-WGPCGHIFHFHCISQWLK   64 (73)
T ss_dssp             SCCSBETTTTSBTTSTTCCHHHCTTTS-EE-EETTSEEEEHHHHHHHHT
T ss_pred             CcCCcccccChhhhChhhhhcCCccccceE-ecccCCCEEHHHHHHHHh
Confidence            345679999999943210    01224554 478999999999999985

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>PHA02929 N1R/p28-like protein; Provisional

Probab=98.98  E-value=3.8e-10  Score=104.17  Aligned_cols=55  Identities=36%  Similarity=0.775  Sum_probs=40.7

Q ss_pred             CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975          117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT  196 (348)
Q Consensus       117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (348)
                      ...+|+||++.|........  .+..+++|+|.||..||.+|+.                                .+.+
T Consensus       173 ~~~eC~ICle~~~~~~~~~~--~~~vl~~C~H~FC~~CI~~Wl~--------------------------------~~~t  218 (238)
T PHA02929        173 KDKECAICMEKVYDKEIKNM--YFGILSNCNHVFCIECIDIWKK--------------------------------EKNT  218 (238)
T ss_pred             CCCCCccCCcccccCccccc--cceecCCCCCcccHHHHHHHHh--------------------------------cCCC
Confidence            46799999999865331110  1223479999999999999975                                4568


Q ss_pred             CCCCCcccC
Q 018975          197 CPVCRKVFH  205 (348)
Q Consensus       197 CPvCR~~~~  205 (348)
                      ||+||.++.
T Consensus       219 CPlCR~~~~  227 (238)
T PHA02929        219 CPVCRTPFI  227 (238)
T ss_pred             CCCCCCEee
Confidence            999999884

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=1.9e-10  Score=107.28  Aligned_cols=50  Identities=30%  Similarity=0.885  Sum_probs=42.9

Q ss_pred             CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCC
Q 018975          119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCP  198 (348)
Q Consensus       119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP  198 (348)
                      .+|+||+..|...|.      ++ .++|.|.||..|+..|+.                               ..+..||
T Consensus       324 veCaICms~fiK~d~------~~-vlPC~H~FH~~Cv~kW~~-------------------------------~y~~~CP  365 (374)
T COG5540         324 VECAICMSNFIKNDR------LR-VLPCDHRFHVGCVDKWLL-------------------------------GYSNKCP  365 (374)
T ss_pred             ceEEEEhhhhcccce------EE-EeccCceechhHHHHHHh-------------------------------hhcccCC
Confidence            699999999987665      33 599999999999999987                               4667899


Q ss_pred             CCCcccCc
Q 018975          199 VCRKVFHV  206 (348)
Q Consensus       199 vCR~~~~~  206 (348)
                      +||.+++.
T Consensus       366 vCrt~iPP  373 (374)
T COG5540         366 VCRTAIPP  373 (374)
T ss_pred             ccCCCCCC
Confidence            99999864

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=2.2e-10  Score=110.33  Aligned_cols=50  Identities=32%  Similarity=0.808  Sum_probs=42.2

Q ss_pred             CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCC
Q 018975          119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCP  198 (348)
Q Consensus       119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP  198 (348)
                      ..|+|||+.|..+|+.       +.++|.|.||..||+.|+.                               ..+..||
T Consensus       230 ~~CaIClEdY~~Gdkl-------RiLPC~H~FH~~CIDpWL~-------------------------------~~r~~CP  271 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKL-------RILPCSHKFHVNCIDPWLT-------------------------------QTRTFCP  271 (348)
T ss_pred             ceEEEeecccccCCee-------eEecCCCchhhccchhhHh-------------------------------hcCccCC
Confidence            4899999999999875       3589999999999999985                               3456799


Q ss_pred             CCCcccCc
Q 018975          199 VCRKVFHV  206 (348)
Q Consensus       199 vCR~~~~~  206 (348)
                      +|+..+..
T Consensus       272 vCK~di~~  279 (348)
T KOG4628|consen  272 VCKRDIRT  279 (348)
T ss_pred             CCCCcCCC
Confidence            99987744

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=3.6e-10  Score=98.21  Aligned_cols=56  Identities=34%  Similarity=0.680  Sum_probs=45.8

Q ss_pred             CCCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCC
Q 018975          115 NHPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNM  194 (348)
Q Consensus       115 n~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (348)
                      +.+...|||||..|.+..      ||.  |.|||+||+.||..-++                                ..
T Consensus       128 ~~~~~~CPiCl~~~sek~------~vs--TkCGHvFC~~Cik~alk--------------------------------~~  167 (187)
T KOG0320|consen  128 KEGTYKCPICLDSVSEKV------PVS--TKCGHVFCSQCIKDALK--------------------------------NT  167 (187)
T ss_pred             cccccCCCceecchhhcc------ccc--cccchhHHHHHHHHHHH--------------------------------hC
Confidence            356689999999997632      444  89999999999999875                                56


Q ss_pred             CCCCCCCcccCccchH
Q 018975          195 GTCPVCRKVFHVKDLE  210 (348)
Q Consensus       195 ~~CPvCR~~~~~~d~~  210 (348)
                      ..||+||+.|+.+++-
T Consensus       168 ~~CP~C~kkIt~k~~~  183 (187)
T KOG0320|consen  168 NKCPTCRKKITHKQFH  183 (187)
T ss_pred             CCCCCcccccchhhhe
Confidence            7899999999888654

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=98.86  E-value=1.6e-09  Score=83.84  Aligned_cols=58  Identities=31%  Similarity=0.737  Sum_probs=41.3

Q ss_pred             CCCCCccccccccCCCC-----ccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCC
Q 018975          118 DGDCPLCLYPLFRKDKN-----VEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDG  192 (348)
Q Consensus       118 ~~~C~ICl~~f~~~~~~-----~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (348)
                      +..|+||...|.. .-.     +...|++. -.|.|.||.+||.+|++ .+                            .
T Consensus        21 dd~CgICr~~fdg-~Cp~Ck~Pgd~Cplv~-g~C~H~FH~hCI~kWl~-~~----------------------------~   69 (85)
T PF12861_consen   21 DDVCGICRMPFDG-CCPDCKFPGDDCPLVW-GKCSHNFHMHCILKWLS-TQ----------------------------S   69 (85)
T ss_pred             CCceeeEeccccc-CCCCccCCCCCCceee-ccCccHHHHHHHHHHHc-cc----------------------------c
Confidence            5788888888753 211     22346663 57999999999999986 11                            2


Q ss_pred             CCCCCCCCCcccCc
Q 018975          193 NMGTCPVCRKVFHV  206 (348)
Q Consensus       193 ~~~~CPvCR~~~~~  206 (348)
                      .+..||+||.++..
T Consensus        70 ~~~~CPmCR~~w~~   83 (85)
T PF12861_consen   70 SKGQCPMCRQPWKF   83 (85)
T ss_pred             CCCCCCCcCCeeee
Confidence            45789999998744

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=98.83  E-value=5.2e-09  Score=100.11  Aligned_cols=43  Identities=28%  Similarity=0.828  Sum_probs=31.4

Q ss_pred             CCCCCCCccccccccCC-CCc----cccCcccccCCCCcccHHHHHHHHH
Q 018975          116 HPDGDCPLCLYPLFRKD-KNV----EVLPFMKLMSCFHCFHSECIVRWWN  160 (348)
Q Consensus       116 ~~~~~C~ICl~~f~~~~-~~~----~~~p~~k~~~C~H~FH~~Cl~~w~~  160 (348)
                      ..+..|.||++++...+ +..    ..-|  |+++|+|+||.+||..|++
T Consensus       285 n~D~~C~ICmde~~h~~~~~~~~~~~~~p--KrLpCGHilHl~CLknW~E  332 (491)
T COG5243         285 NSDRTCTICMDEMFHPDHEPLPRGLDMTP--KRLPCGHILHLHCLKNWLE  332 (491)
T ss_pred             CCCCeEEEecccccCCCCccCcccccCCc--ccccccceeeHHHHHHHHH
Confidence            35789999999954433 110    1113  6799999999999999986

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=98.83  E-value=1.3e-09  Score=96.83  Aligned_cols=71  Identities=27%  Similarity=0.456  Sum_probs=46.0

Q ss_pred             CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975          117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT  196 (348)
Q Consensus       117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (348)
                      ...+|+||++.+.+        |.  +|.|+|.||..||..|+.......     +....           .........
T Consensus        17 ~~~~CpICld~~~d--------PV--vT~CGH~FC~~CI~~wl~~s~~s~-----~~~~~-----------~~~~k~~~~   70 (193)
T PLN03208         17 GDFDCNICLDQVRD--------PV--VTLCGHLFCWPCIHKWTYASNNSR-----QRVDQ-----------YDHKREPPK   70 (193)
T ss_pred             CccCCccCCCcCCC--------cE--EcCCCchhHHHHHHHHHHhccccc-----ccccc-----------ccccCCCCc
Confidence            35799999998853        43  389999999999999975211100     00000           000124568


Q ss_pred             CCCCCcccCccchHHHH
Q 018975          197 CPVCRKVFHVKDLEHVL  213 (348)
Q Consensus       197 CPvCR~~~~~~d~~~~~  213 (348)
                      ||+||.++...++..++
T Consensus        71 CPvCR~~Is~~~LvPiy   87 (193)
T PLN03208         71 CPVCKSDVSEATLVPIY   87 (193)
T ss_pred             CCCCCCcCChhcEEEee
Confidence            99999999887665444

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.83  E-value=1.3e-09  Score=108.28  Aligned_cols=58  Identities=36%  Similarity=0.798  Sum_probs=46.4

Q ss_pred             CCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCC
Q 018975          118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTC  197 (348)
Q Consensus       118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C  197 (348)
                      ...|||||++..          +..+|.|+|.||..||.+||++...                           .....|
T Consensus       186 ~~~CPICL~~~~----------~p~~t~CGHiFC~~CiLqy~~~s~~---------------------------~~~~~C  228 (513)
T KOG2164|consen  186 DMQCPICLEPPS----------VPVRTNCGHIFCGPCILQYWNYSAI---------------------------KGPCSC  228 (513)
T ss_pred             CCcCCcccCCCC----------cccccccCceeeHHHHHHHHhhhcc---------------------------cCCccC
Confidence            689999999874          3456999999999999999984311                           245689


Q ss_pred             CCCCcccCccchHHH
Q 018975          198 PVCRKVFHVKDLEHV  212 (348)
Q Consensus       198 PvCR~~~~~~d~~~~  212 (348)
                      |+||..|+.+|+..+
T Consensus       229 PiC~s~I~~kdl~pv  243 (513)
T KOG2164|consen  229 PICRSTITLKDLLPV  243 (513)
T ss_pred             Cchhhhccccceeee
Confidence            999999999887644

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=6e-09  Score=97.03  Aligned_cols=53  Identities=30%  Similarity=0.741  Sum_probs=41.8

Q ss_pred             CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCC
Q 018975          116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMG  195 (348)
Q Consensus       116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (348)
                      ..+..|.|||+.-..        |  -.|+|+|.||..||..|..                                .+.
T Consensus       237 ~a~~kC~LCLe~~~~--------p--SaTpCGHiFCWsCI~~w~~--------------------------------ek~  274 (293)
T KOG0317|consen  237 EATRKCSLCLENRSN--------P--SATPCGHIFCWSCILEWCS--------------------------------EKA  274 (293)
T ss_pred             CCCCceEEEecCCCC--------C--CcCcCcchHHHHHHHHHHc--------------------------------ccc
Confidence            345789999988643        2  2499999999999999975                                344


Q ss_pred             CCCCCCcccCccchH
Q 018975          196 TCPVCRKVFHVKDLE  210 (348)
Q Consensus       196 ~CPvCR~~~~~~d~~  210 (348)
                      -||+||++++..++.
T Consensus       275 eCPlCR~~~~pskvi  289 (293)
T KOG0317|consen  275 ECPLCREKFQPSKVI  289 (293)
T ss_pred             CCCcccccCCCccee
Confidence            599999999876653

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.67  E-value=2e-08  Score=67.58  Aligned_cols=32  Identities=38%  Similarity=1.043  Sum_probs=25.3

Q ss_pred             CCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975          120 DCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN  160 (348)
Q Consensus       120 ~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~  160 (348)
                      +|+||++.+..        ++. .++|+|.||..|+..|+.
T Consensus         1 ~C~iC~~~~~~--------~~~-~~~C~H~~c~~C~~~~~~   32 (45)
T cd00162           1 ECPICLEEFRE--------PVV-LLPCGHVFCRSCIDKWLK   32 (45)
T ss_pred             CCCcCchhhhC--------ceE-ecCCCChhcHHHHHHHHH
Confidence            59999999822        232 356999999999999976

>PHA02926 zinc finger-like protein; Provisional

Probab=98.62  E-value=1.1e-07  Score=85.84  Aligned_cols=63  Identities=29%  Similarity=0.603  Sum_probs=41.8

Q ss_pred             CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCC
Q 018975          116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMG  195 (348)
Q Consensus       116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (348)
                      ..+..|+|||+......... .--|..+.+|.|.||..||..|.+..+.                          .+...
T Consensus       168 SkE~eCgICmE~I~eK~~~~-eRrFGIL~~CnHsFCl~CIr~Wr~~r~~--------------------------~~~~r  220 (242)
T PHA02926        168 SKEKECGICYEVVYSKRLEN-DRYFGLLDSCNHIFCITCINIWHRTRRE--------------------------TGASD  220 (242)
T ss_pred             cCCCCCccCccccccccccc-cccccccCCCCchHHHHHHHHHHHhccc--------------------------cCcCC
Confidence            34689999999875421100 0014456799999999999999651110                          12456


Q ss_pred             CCCCCCcccC
Q 018975          196 TCPVCRKVFH  205 (348)
Q Consensus       196 ~CPvCR~~~~  205 (348)
                      .||+||..+.
T Consensus       221 sCPiCR~~f~  230 (242)
T PHA02926        221 NCPICRTRFR  230 (242)
T ss_pred             cCCCCcceee
Confidence            7999999874

>smart00504 Ubox Modified RING finger domain

Probab=98.61  E-value=3.2e-08  Score=72.51  Aligned_cols=53  Identities=25%  Similarity=0.405  Sum_probs=42.9

Q ss_pred             CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCC
Q 018975          119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCP  198 (348)
Q Consensus       119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP  198 (348)
                      ..||||+..+.+        |.+  ++|+|.|+..||..|+.                                ....||
T Consensus         2 ~~Cpi~~~~~~~--------Pv~--~~~G~v~~~~~i~~~~~--------------------------------~~~~cP   39 (63)
T smart00504        2 FLCPISLEVMKD--------PVI--LPSGQTYERRAIEKWLL--------------------------------SHGTDP   39 (63)
T ss_pred             cCCcCCCCcCCC--------CEE--CCCCCEEeHHHHHHHHH--------------------------------HCCCCC
Confidence            479999999864        544  79999999999999986                                246899


Q ss_pred             CCCcccCccchHHHH
Q 018975          199 VCRKVFHVKDLEHVL  213 (348)
Q Consensus       199 vCR~~~~~~d~~~~~  213 (348)
                      +|++++..+|+..+.
T Consensus        40 ~~~~~~~~~~l~~~~   54 (63)
T smart00504       40 VTGQPLTHEDLIPNL   54 (63)
T ss_pred             CCcCCCChhhceeCH
Confidence            999999877765443

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=1.3e-08  Score=92.24  Aligned_cols=58  Identities=26%  Similarity=0.566  Sum_probs=43.7

Q ss_pred             CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975          117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT  196 (348)
Q Consensus       117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (348)
                      ...+|.|||+.-.+        |.  +|.|+|.||.-||.+|+.   ..                          .....
T Consensus        46 ~~FdCNICLd~akd--------PV--vTlCGHLFCWpClyqWl~---~~--------------------------~~~~~   86 (230)
T KOG0823|consen   46 GFFDCNICLDLAKD--------PV--VTLCGHLFCWPCLYQWLQ---TR--------------------------PNSKE   86 (230)
T ss_pred             CceeeeeeccccCC--------CE--EeecccceehHHHHHHHh---hc--------------------------CCCee
Confidence            45799999987543        44  489999999999999975   21                          24567


Q ss_pred             CCCCCcccCccchHHHH
Q 018975          197 CPVCRKVFHVKDLEHVL  213 (348)
Q Consensus       197 CPvCR~~~~~~d~~~~~  213 (348)
                      ||||+..+..+.+-.+|
T Consensus        87 cPVCK~~Vs~~~vvPlY  103 (230)
T KOG0823|consen   87 CPVCKAEVSIDTVVPLY  103 (230)
T ss_pred             CCccccccccceEEeee
Confidence            99999999776544333

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.59  E-value=2.5e-08  Score=67.66  Aligned_cols=30  Identities=37%  Similarity=0.996  Sum_probs=25.1

Q ss_pred             CCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975          121 CPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN  160 (348)
Q Consensus       121 C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~  160 (348)
                      ||||++.|.+        |.+  ++|+|.|+..||.+||+
T Consensus         1 CpiC~~~~~~--------Pv~--l~CGH~FC~~Cl~~~~~   30 (42)
T PF15227_consen    1 CPICLDLFKD--------PVS--LPCGHSFCRSCLERLWK   30 (42)
T ss_dssp             ETTTTSB-SS--------EEE---SSSSEEEHHHHHHHHC
T ss_pred             CCccchhhCC--------ccc--cCCcCHHHHHHHHHHHH
Confidence            8999999975        655  89999999999999985

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.55  E-value=1.8e-08  Score=75.56  Aligned_cols=59  Identities=32%  Similarity=0.824  Sum_probs=42.5

Q ss_pred             CCCCCCCccccccccCCCC-----ccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCC
Q 018975          116 HPDGDCPLCLYPLFRKDKN-----VEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPI  190 (348)
Q Consensus       116 ~~~~~C~ICl~~f~~~~~~-----~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (348)
                      .++..|.||--+|.. -..     +-.+|++- -.|.|.||.+||.+|++ .+                           
T Consensus        18 ~~~e~CGiCRm~Fdg-~Cp~Ck~PgDdCPLv~-G~C~h~fh~hCI~~wl~-~~---------------------------   67 (84)
T KOG1493|consen   18 APDETCGICRMPFDG-CCPDCKLPGDDCPLVW-GYCLHAFHAHCILKWLN-TP---------------------------   67 (84)
T ss_pred             CCCCccceEecccCC-cCCCCcCCCCCCccHH-HHHHHHHHHHHHHHHhc-Cc---------------------------
Confidence            456789999888853 111     12246653 47999999999999987 21                           


Q ss_pred             CCCCCCCCCCCcccC
Q 018975          191 DGNMGTCPVCRKVFH  205 (348)
Q Consensus       191 ~~~~~~CPvCR~~~~  205 (348)
                       ..++.||+||..+.
T Consensus        68 -tsq~~CPmcRq~~~   81 (84)
T KOG1493|consen   68 -TSQGQCPMCRQTWQ   81 (84)
T ss_pred             -cccccCCcchheeE
Confidence             35689999999774

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.51  E-value=5.5e-08  Score=64.77  Aligned_cols=31  Identities=39%  Similarity=0.944  Sum_probs=25.5

Q ss_pred             CCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975          121 CPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN  160 (348)
Q Consensus       121 C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~  160 (348)
                      |+||++.+.+        |++ .++|+|.|+..|+.+|+.
T Consensus         1 C~iC~~~~~~--------~~~-~~~CGH~fC~~C~~~~~~   31 (39)
T PF13923_consen    1 CPICLDELRD--------PVV-VTPCGHSFCKECIEKYLE   31 (39)
T ss_dssp             ETTTTSB-SS--------EEE-ECTTSEEEEHHHHHHHHH
T ss_pred             CCCCCCcccC--------cCE-ECCCCCchhHHHHHHHHH
Confidence            8999998864        443 489999999999999986

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.50  E-value=7.2e-08  Score=67.77  Aligned_cols=46  Identities=33%  Similarity=0.788  Sum_probs=35.7

Q ss_pred             CCCCCccccccccCCCCccccCcccccCCCCc-ccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975          118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHC-FHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT  196 (348)
Q Consensus       118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~-FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (348)
                      +..|+||+..+..         . .+++|+|. |+..|+.+|+.                                ....
T Consensus         2 ~~~C~iC~~~~~~---------~-~~~pCgH~~~C~~C~~~~~~--------------------------------~~~~   39 (50)
T PF13920_consen    2 DEECPICFENPRD---------V-VLLPCGHLCFCEECAERLLK--------------------------------RKKK   39 (50)
T ss_dssp             HSB-TTTSSSBSS---------E-EEETTCEEEEEHHHHHHHHH--------------------------------TTSB
T ss_pred             cCCCccCCccCCc---------e-EEeCCCChHHHHHHhHHhcc--------------------------------cCCC
Confidence            3689999998642         2 24799999 99999999975                                4578


Q ss_pred             CCCCCcccC
Q 018975          197 CPVCRKVFH  205 (348)
Q Consensus       197 CPvCR~~~~  205 (348)
                      ||+||++|.
T Consensus        40 CP~Cr~~i~   48 (50)
T PF13920_consen   40 CPICRQPIE   48 (50)
T ss_dssp             BTTTTBB-S
T ss_pred             CCcCChhhc
Confidence            999999885

...

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=4.3e-08  Score=96.79  Aligned_cols=59  Identities=29%  Similarity=0.763  Sum_probs=42.0

Q ss_pred             CCCCCCCccccccccCCCC-cccc-------CcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccC
Q 018975          116 HPDGDCPLCLYPLFRKDKN-VEVL-------PFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDML  187 (348)
Q Consensus       116 ~~~~~C~ICl~~f~~~~~~-~~~~-------p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~  187 (348)
                      ....+|+||+.++.--... ++..       -+| +|+|.|.||..||.+|.+                           
T Consensus       569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm-~tPC~HifH~~CL~~WMd---------------------------  620 (636)
T KOG0828|consen  569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYM-LTPCHHIFHRQCLLQWMD---------------------------  620 (636)
T ss_pred             hccccceEeccccceeeccCcchhhhhhhhcccc-ccchHHHHHHHHHHHHHh---------------------------
Confidence            4456999999886431111 1111       145 589999999999999986                           


Q ss_pred             CCCCCCCCCCCCCCcccCc
Q 018975          188 GPIDGNMGTCPVCRKVFHV  206 (348)
Q Consensus       188 ~~~~~~~~~CPvCR~~~~~  206 (348)
                          ..+..||+||.+++.
T Consensus       621 ----~ykl~CPvCR~pLPp  635 (636)
T KOG0828|consen  621 ----TYKLICPVCRCPLPP  635 (636)
T ss_pred             ----hhcccCCccCCCCCC
Confidence                355689999999863

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.48  E-value=9.1e-08  Score=94.47  Aligned_cols=51  Identities=33%  Similarity=0.600  Sum_probs=41.1

Q ss_pred             CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975          117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT  196 (348)
Q Consensus       117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (348)
                      ....|+||+..|..        |++  ++|+|.||..||..||.                                ....
T Consensus        25 ~~l~C~IC~d~~~~--------Pvi--tpCgH~FCs~CI~~~l~--------------------------------~~~~   62 (397)
T TIGR00599        25 TSLRCHICKDFFDV--------PVL--TSCSHTFCSLCIRRCLS--------------------------------NQPK   62 (397)
T ss_pred             cccCCCcCchhhhC--------ccC--CCCCCchhHHHHHHHHh--------------------------------CCCC
Confidence            45799999998854        443  89999999999999975                                3357


Q ss_pred             CCCCCcccCccch
Q 018975          197 CPVCRKVFHVKDL  209 (348)
Q Consensus       197 CPvCR~~~~~~d~  209 (348)
                      ||+||..+....+
T Consensus        63 CP~Cr~~~~~~~L   75 (397)
T TIGR00599        63 CPLCRAEDQESKL   75 (397)
T ss_pred             CCCCCCccccccC
Confidence            9999998876544

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=98.42  E-value=1.4e-07  Score=71.40  Aligned_cols=51  Identities=35%  Similarity=0.896  Sum_probs=35.8

Q ss_pred             CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCC
Q 018975          119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCP  198 (348)
Q Consensus       119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP  198 (348)
                      +.|+-|..+...+++    +|..- -.|.|.||.+||.+|++                                .++.||
T Consensus        32 ~~C~eCq~~~~~~~e----C~v~w-G~CnHaFH~HCI~rWL~--------------------------------Tk~~CP   74 (88)
T COG5194          32 GTCPECQFGMTPGDE----CPVVW-GVCNHAFHDHCIYRWLD--------------------------------TKGVCP   74 (88)
T ss_pred             CcCcccccCCCCCCc----ceEEE-EecchHHHHHHHHHHHh--------------------------------hCCCCC
Confidence            445555544433332    34442 47999999999999986                                578999


Q ss_pred             CCCcccCc
Q 018975          199 VCRKVFHV  206 (348)
Q Consensus       199 vCR~~~~~  206 (348)
                      +||+.+-.
T Consensus        75 ld~q~w~~   82 (88)
T COG5194          75 LDRQTWVL   82 (88)
T ss_pred             CCCceeEE
Confidence            99998843

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.35  E-value=2.9e-07  Score=62.99  Aligned_cols=33  Identities=24%  Similarity=0.517  Sum_probs=25.5

Q ss_pred             CCCccccccccCCCCccccCcccccCCCCcccHHHHHHHH
Q 018975          120 DCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWW  159 (348)
Q Consensus       120 ~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~  159 (348)
                      .|+||+..|..+.      ++. +|+|+|.|+..|+..+.
T Consensus         1 ~C~~C~~~~~~~~------~~~-l~~CgH~~C~~C~~~~~   33 (44)
T PF14634_consen    1 HCNICFEKYSEER------RPR-LTSCGHIFCEKCLKKLK   33 (44)
T ss_pred             CCcCcCccccCCC------CeE-EcccCCHHHHHHHHhhc
Confidence            5999999993222      233 59999999999999873

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.30  E-value=2.3e-07  Score=96.02  Aligned_cols=38  Identities=32%  Similarity=0.723  Sum_probs=31.7

Q ss_pred             CCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975          118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN  160 (348)
Q Consensus       118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~  160 (348)
                      +..|+||++.+..+++..     .|+++|+|.||..||..|++
T Consensus       291 ~~~C~IC~e~l~~~~~~~-----~~rL~C~Hifh~~CL~~W~e  328 (543)
T KOG0802|consen  291 DELCIICLEELHSGHNIT-----PKRLPCGHIFHDSCLRSWFE  328 (543)
T ss_pred             CCeeeeechhhccccccc-----cceeecccchHHHHHHHHHH
Confidence            579999999998765421     25699999999999999987

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=98.28  E-value=1.8e-07  Score=101.48  Aligned_cols=109  Identities=23%  Similarity=0.302  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHhhcCCCceeccC-CCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCCCCCCHHHHHH
Q 018975            4 EEVAMELEAVQAVYGDECVVLDS-YPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIESKGLDDQRQKH   82 (348)
Q Consensus         4 Ee~~~ElEAL~sIY~dd~~v~~~-~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~~GL~~~~i~~   82 (348)
                      |.|++|+|||.|||++|++.+.. ..+...|.+.+.-   +....+.+.|.++.++.||...|.+.+.+..|+.+.+++.
T Consensus         8 eiQ~~e~ea~k~i~~~d~e~l~~r~~w~~~i~l~~l~---s~~~~~~~~lh~~~~~~yp~~kp~i~lk~~~~~~d~~i~~   84 (1351)
T KOG1035|consen    8 EIQENELEALKAIYMDDFEELKARWAWVCHILLIALR---SCSLKLSGRLHVKCKRKYPYSKPEIKLKDHQGVSDEDIEL   84 (1351)
T ss_pred             HHHHHHHHhhcccccchHHHHHHHHhhhhhhhhhhhh---hhhHHHhhHhhhhhccccCCCCccccccccccchHHHHHH
Confidence            67999999999999999876642 2233333333211   1123678899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCchhhHHHHHHHHHhhhCC
Q 018975           83 LISCIQDKAHELTSCLMLVALCEEAVAKLSAMN  115 (348)
Q Consensus        83 L~~~L~~~~ee~~G~~ml~elie~~kE~Lte~n  115 (348)
                      |...+...++...|+.|++++..-++++|.+.+
T Consensus        85 L~~~l~~~~~~~~G~~~i~eLa~~vqefl~~~~  117 (1351)
T KOG1035|consen   85 LSNELTALAKTLRGEVMIAELASIVQEFLKDHQ  117 (1351)
T ss_pred             HHHHHHHhhccccccEEeeeHhhhhHHHHhccC
Confidence            999999999999999999999999999998765

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=98.28  E-value=3.5e-07  Score=69.03  Aligned_cols=65  Identities=22%  Similarity=0.466  Sum_probs=29.4

Q ss_pred             CCCCCccccccccCCCCccccCccccc--CCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCC
Q 018975          118 DGDCPLCLYPLFRKDKNVEVLPFMKLM--SCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMG  195 (348)
Q Consensus       118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~--~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (348)
                      +.+|+||+..+...+..    |.....  .|++.||..||..||..+.....                     ......+
T Consensus         2 ~~~C~IC~~~~~~~~~~----p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~---------------------~~~~~~G   56 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEI----PDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQ---------------------SFIPIFG   56 (70)
T ss_dssp             --S-SSS--SS-TT---------B--S-TT----B-SGGGHHHHHHHHSSS----------------------TTT--EE
T ss_pred             CCCCCcCCcEecCCCCc----CceEcCCcccCCHHHHHHHHHHHHHcccCCe---------------------eeccccc
Confidence            46899999887633221    222233  89999999999999975544210                     0113456


Q ss_pred             CCCCCCcccCcc
Q 018975          196 TCPVCRKVFHVK  207 (348)
Q Consensus       196 ~CPvCR~~~~~~  207 (348)
                      .||.|+.+|..+
T Consensus        57 ~CP~C~~~i~~~   68 (70)
T PF11793_consen   57 ECPYCSSPISWS   68 (70)
T ss_dssp             E-TTT-SEEEGG
T ss_pred             CCcCCCCeeeEe
Confidence            899999998653

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.25  E-value=5.5e-07  Score=60.35  Aligned_cols=31  Identities=35%  Similarity=1.017  Sum_probs=26.1

Q ss_pred             CCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975          121 CPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN  160 (348)
Q Consensus       121 C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~  160 (348)
                      |+||+..+...        . .+++|+|.|+..||.+|++
T Consensus         1 C~iC~~~~~~~--------~-~~~~C~H~fC~~C~~~~~~   31 (41)
T PF00097_consen    1 CPICLEPFEDP--------V-ILLPCGHSFCRDCLRKWLE   31 (41)
T ss_dssp             ETTTSSBCSSE--------E-EETTTSEEEEHHHHHHHHH
T ss_pred             CCcCCccccCC--------C-EEecCCCcchHHHHHHHHH
Confidence            89999998652        2 2489999999999999986

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=98.25  E-value=2.5e-07  Score=90.74  Aligned_cols=36  Identities=33%  Similarity=1.052  Sum_probs=28.1

Q ss_pred             CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975          119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN  160 (348)
Q Consensus       119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~  160 (348)
                      -+|||||+-+..+  +.+.++    +.|.|.||..|+..||+
T Consensus       176 PTCpVCLERMD~s--~~gi~t----~~c~Hsfh~~cl~~w~~  211 (493)
T KOG0804|consen  176 PTCPVCLERMDSS--TTGILT----ILCNHSFHCSCLMKWWD  211 (493)
T ss_pred             CCcchhHhhcCcc--ccceee----eecccccchHHHhhccc
Confidence            4899999998543  333222    78999999999999976

>smart00184 RING Ring finger

Probab=98.23  E-value=9.5e-07  Score=57.17  Aligned_cols=30  Identities=37%  Similarity=0.912  Sum_probs=23.7

Q ss_pred             CCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975          121 CPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN  160 (348)
Q Consensus       121 C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~  160 (348)
                      |+||+.....         . ..++|+|.||..|+..|+.
T Consensus         1 C~iC~~~~~~---------~-~~~~C~H~~c~~C~~~~~~   30 (39)
T smart00184        1 CPICLEELKD---------P-VVLPCGHTFCRSCIRKWLK   30 (39)
T ss_pred             CCcCccCCCC---------c-EEecCCChHHHHHHHHHHH
Confidence            8999987321         2 2379999999999999975

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.23  E-value=5.7e-07  Score=83.03  Aligned_cols=51  Identities=31%  Similarity=0.608  Sum_probs=39.4

Q ss_pred             CCCCCccccccccCCCCccccCcccccCCCCcccHHHHHH-HHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975          118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVR-WWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT  196 (348)
Q Consensus       118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~-w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (348)
                      +..|+||++....        |.  +++|+|+||..||.. |-.                               .....
T Consensus       215 d~kC~lC~e~~~~--------ps--~t~CgHlFC~~Cl~~~~t~-------------------------------~k~~~  253 (271)
T COG5574         215 DYKCFLCLEEPEV--------PS--CTPCGHLFCLSCLLISWTK-------------------------------KKYEF  253 (271)
T ss_pred             ccceeeeecccCC--------cc--cccccchhhHHHHHHHHHh-------------------------------hcccc
Confidence            5569999987642        33  389999999999999 732                               24567


Q ss_pred             CCCCCcccCccch
Q 018975          197 CPVCRKVFHVKDL  209 (348)
Q Consensus       197 CPvCR~~~~~~d~  209 (348)
                      ||+||.....+++
T Consensus       254 CplCRak~~pk~v  266 (271)
T COG5574         254 CPLCRAKVYPKKV  266 (271)
T ss_pred             Cchhhhhccchhh
Confidence            9999998877655

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=98.20  E-value=2.1e-06  Score=81.84  Aligned_cols=55  Identities=25%  Similarity=0.611  Sum_probs=37.9

Q ss_pred             CCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCC
Q 018975          118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTC  197 (348)
Q Consensus       118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C  197 (348)
                      +..||||+..-.....    +-|+. ..|||.||..|+.+.|.                               .....|
T Consensus         3 ~~~CP~Ck~~~y~np~----~kl~i-~~CGH~~C~sCv~~l~~-------------------------------~~~~~C   46 (309)
T TIGR00570         3 DQGCPRCKTTKYRNPS----LKLMV-NVCGHTLCESCVDLLFV-------------------------------RGSGSC   46 (309)
T ss_pred             CCCCCcCCCCCccCcc----ccccc-CCCCCcccHHHHHHHhc-------------------------------CCCCCC
Confidence            4589999985221111    11232 27999999999999864                               244689


Q ss_pred             CCCCcccCccc
Q 018975          198 PVCRKVFHVKD  208 (348)
Q Consensus       198 PvCR~~~~~~d  208 (348)
                      |+|+.++...+
T Consensus        47 P~C~~~lrk~~   57 (309)
T TIGR00570        47 PECDTPLRKNN   57 (309)
T ss_pred             CCCCCccchhh
Confidence            99999886654

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=98.20  E-value=4.9e-07  Score=85.82  Aligned_cols=50  Identities=28%  Similarity=0.616  Sum_probs=43.4

Q ss_pred             CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCC
Q 018975          119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCP  198 (348)
Q Consensus       119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP  198 (348)
                      ..|.||.+.|..        |.+  |+|+|.||+-||..|++                                .+-.||
T Consensus        24 LRC~IC~eyf~i--------p~i--tpCsHtfCSlCIR~~L~--------------------------------~~p~CP   61 (442)
T KOG0287|consen   24 LRCGICFEYFNI--------PMI--TPCSHTFCSLCIRKFLS--------------------------------YKPQCP   61 (442)
T ss_pred             HHHhHHHHHhcC--------cee--ccccchHHHHHHHHHhc--------------------------------cCCCCC
Confidence            489999999964        544  89999999999999986                                567899


Q ss_pred             CCCcccCccchH
Q 018975          199 VCRKVFHVKDLE  210 (348)
Q Consensus       199 vCR~~~~~~d~~  210 (348)
                      .|+..+.+.++.
T Consensus        62 ~C~~~~~Es~Lr   73 (442)
T KOG0287|consen   62 TCCVTVTESDLR   73 (442)
T ss_pred             ceecccchhhhh
Confidence            999999998876

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=98.13  E-value=9e-07  Score=82.49  Aligned_cols=46  Identities=33%  Similarity=0.559  Sum_probs=38.5

Q ss_pred             CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCC
Q 018975          119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCP  198 (348)
Q Consensus       119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP  198 (348)
                      ..|-||-+.|..        |.  .|+|+|-||+-||.+|++                                .+-.||
T Consensus        26 lrC~IC~~~i~i--------p~--~TtCgHtFCslCIR~hL~--------------------------------~qp~CP   63 (391)
T COG5432          26 LRCRICDCRISI--------PC--ETTCGHTFCSLCIRRHLG--------------------------------TQPFCP   63 (391)
T ss_pred             HHhhhhhheeec--------ce--ecccccchhHHHHHHHhc--------------------------------CCCCCc
Confidence            479999998864        43  389999999999999985                                667899


Q ss_pred             CCCcccCc
Q 018975          199 VCRKVFHV  206 (348)
Q Consensus       199 vCR~~~~~  206 (348)
                      +||+++..
T Consensus        64 ~Cr~~~~e   71 (391)
T COG5432          64 VCREDPCE   71 (391)
T ss_pred             cccccHHh
Confidence            99997744

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=97.93  E-value=2.3e-06  Score=62.69  Aligned_cols=54  Identities=31%  Similarity=0.595  Sum_probs=25.7

Q ss_pred             CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCC
Q 018975          119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCP  198 (348)
Q Consensus       119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP  198 (348)
                      ..|++|..-|..        |++ +..|.|.|++.||..-+                                  ..-||
T Consensus         8 LrCs~C~~~l~~--------pv~-l~~CeH~fCs~Ci~~~~----------------------------------~~~CP   44 (65)
T PF14835_consen    8 LRCSICFDILKE--------PVC-LGGCEHIFCSSCIRDCI----------------------------------GSECP   44 (65)
T ss_dssp             TS-SSS-S--SS---------B----SSS--B-TTTGGGGT----------------------------------TTB-S
T ss_pred             cCCcHHHHHhcC--------Cce-eccCccHHHHHHhHHhc----------------------------------CCCCC
Confidence            589999988864        665 48999999999996643                                  13499


Q ss_pred             CCCcccCccchHHHHhh
Q 018975          199 VCRKVFHVKDLEHVLNL  215 (348)
Q Consensus       199 vCR~~~~~~d~~~~~~l  215 (348)
                      ||+.+...+|+.-...|
T Consensus        45 vC~~Paw~qD~~~NrqL   61 (65)
T PF14835_consen   45 VCHTPAWIQDIQINRQL   61 (65)
T ss_dssp             SS--B-S-SS----HHH
T ss_pred             CcCChHHHHHHHhhhhh
Confidence            99999999888655433

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.92  E-value=1.1e-06  Score=81.04  Aligned_cols=67  Identities=27%  Similarity=0.515  Sum_probs=46.9

Q ss_pred             HhhhCCCCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCC
Q 018975          110 KLSAMNHPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGP  189 (348)
Q Consensus       110 ~Lte~n~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (348)
                      .++.....+..|+||-..|..+.+.....-.+-.++|.|.||..||..|.-                             
T Consensus       216 glPtkhl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWci-----------------------------  266 (328)
T KOG1734|consen  216 GLPTKHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCI-----------------------------  266 (328)
T ss_pred             CCCCCCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhhee-----------------------------
Confidence            344455677899999988865442222111222389999999999999953                             


Q ss_pred             CCCCCCCCCCCCcccCc
Q 018975          190 IDGNMGTCPVCRKVFHV  206 (348)
Q Consensus       190 ~~~~~~~CPvCR~~~~~  206 (348)
                       .+.+.+||.|++.++.
T Consensus       267 -vGKkqtCPYCKekVdl  282 (328)
T KOG1734|consen  267 -VGKKQTCPYCKEKVDL  282 (328)
T ss_pred             -ecCCCCCchHHHHhhH
Confidence             1467799999999843

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=97.87  E-value=6.4e-06  Score=62.59  Aligned_cols=56  Identities=27%  Similarity=0.383  Sum_probs=39.5

Q ss_pred             CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCC
Q 018975          119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCP  198 (348)
Q Consensus       119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP  198 (348)
                      ..||||...+.+        |..  ++|+|.|...||.+|+.                               .....||
T Consensus         5 f~CpIt~~lM~d--------PVi--~~~G~tyer~~I~~~l~-------------------------------~~~~~~P   43 (73)
T PF04564_consen    5 FLCPITGELMRD--------PVI--LPSGHTYERSAIERWLE-------------------------------QNGGTDP   43 (73)
T ss_dssp             GB-TTTSSB-SS--------EEE--ETTSEEEEHHHHHHHHC-------------------------------TTSSB-T
T ss_pred             cCCcCcCcHhhC--------cee--CCcCCEEcHHHHHHHHH-------------------------------cCCCCCC
Confidence            579999999875        544  79999999999999985                               2367899


Q ss_pred             CCCcccCccchHHHHhh
Q 018975          199 VCRKVFHVKDLEHVLNL  215 (348)
Q Consensus       199 vCR~~~~~~d~~~~~~l  215 (348)
                      +|++++...++..+..+
T Consensus        44 ~t~~~l~~~~l~pn~~L   60 (73)
T PF04564_consen   44 FTRQPLSESDLIPNRAL   60 (73)
T ss_dssp             TT-SB-SGGGSEE-HHH
T ss_pred             CCCCcCCcccceECHHH
Confidence            99999988766544433

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=97.85  E-value=1.1e-05  Score=54.91  Aligned_cols=33  Identities=24%  Similarity=0.795  Sum_probs=20.5

Q ss_pred             CCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975          121 CPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN  160 (348)
Q Consensus       121 C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~  160 (348)
                      ||||.+ |..++..    |.  +++|+|.|+..||.+++.
T Consensus         1 CpIc~e-~~~~~n~----P~--~L~CGH~~c~~cl~~l~~   33 (43)
T PF13445_consen    1 CPICKE-FSTEENP----PM--VLPCGHVFCKDCLQKLSK   33 (43)
T ss_dssp             -TTT-----TTSS-----EE--E-SSS-EEEHHHHHHHHH
T ss_pred             CCcccc-ccCCCCC----CE--EEeCccHHHHHHHHHHHh
Confidence            999999 8665542    43  378999999999999976

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=97.84  E-value=1.6e-05  Score=83.14  Aligned_cols=52  Identities=23%  Similarity=0.544  Sum_probs=41.6

Q ss_pred             CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCC
Q 018975          119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCP  198 (348)
Q Consensus       119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP  198 (348)
                      ..|++|-.-+.+  .        ..+.|||+||..|+..-+...                               +..||
T Consensus       644 LkCs~Cn~R~Kd--~--------vI~kC~H~FC~~Cvq~r~etR-------------------------------qRKCP  682 (698)
T KOG0978|consen  644 LKCSVCNTRWKD--A--------VITKCGHVFCEECVQTRYETR-------------------------------QRKCP  682 (698)
T ss_pred             eeCCCccCchhh--H--------HHHhcchHHHHHHHHHHHHHh-------------------------------cCCCC
Confidence            589999987754  1        237999999999999987733                               34699


Q ss_pred             CCCcccCccchHH
Q 018975          199 VCRKVFHVKDLEH  211 (348)
Q Consensus       199 vCR~~~~~~d~~~  211 (348)
                      .|-..|...|+..
T Consensus       683 ~Cn~aFganDv~~  695 (698)
T KOG0978|consen  683 KCNAAFGANDVHR  695 (698)
T ss_pred             CCCCCCCcccccc
Confidence            9999998888753

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=97.83  E-value=1.5e-05  Score=55.90  Aligned_cols=33  Identities=30%  Similarity=0.756  Sum_probs=23.8

Q ss_pred             CCCccccccccCCCCccccCcccccCCC-----CcccHHHHHHHHH
Q 018975          120 DCPLCLYPLFRKDKNVEVLPFMKLMSCF-----HCFHSECIVRWWN  160 (348)
Q Consensus       120 ~C~ICl~~f~~~~~~~~~~p~~k~~~C~-----H~FH~~Cl~~w~~  160 (348)
                      .|-||+... .+++     ++.  ++|.     |+||..||.+|+.
T Consensus         1 ~CrIC~~~~-~~~~-----~l~--~PC~C~G~~~~vH~~Cl~~W~~   38 (49)
T smart00744        1 ICRICHDEG-DEGD-----PLV--SPCRCKGSLKYVHQECLERWIN   38 (49)
T ss_pred             CccCCCCCC-CCCC-----eeE--eccccCCchhHHHHHHHHHHHH
Confidence            489999822 2222     343  6884     9999999999986

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.68  E-value=3.4e-05  Score=75.23  Aligned_cols=63  Identities=24%  Similarity=0.592  Sum_probs=50.1

Q ss_pred             CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCC
Q 018975          119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCP  198 (348)
Q Consensus       119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP  198 (348)
                      ..|||||+.+.-..++.    +. -+.|+|.|.+.||.+|+-  +                            .....||
T Consensus         5 ~tcpiclds~~~~g~hr----~v-sl~cghlFgs~cie~wl~--k----------------------------~~~~~cp   49 (463)
T KOG1645|consen    5 TTCPICLDSYTTAGNHR----IV-SLQCGHLFGSQCIEKWLG--K----------------------------KTKMQCP   49 (463)
T ss_pred             ccCceeeeeeeecCceE----Ee-eecccccccHHHHHHHHh--h----------------------------hhhhhCc
Confidence            58999999987654442    22 379999999999999983  2                            2567899


Q ss_pred             CCCcccCccchHHHHhhh
Q 018975          199 VCRKVFHVKDLEHVLNLV  216 (348)
Q Consensus       199 vCR~~~~~~d~~~~~~l~  216 (348)
                      .|....+..+|.+.+.+.
T Consensus        50 ~c~~katkr~i~~e~alR   67 (463)
T KOG1645|consen   50 LCSGKATKRQIRPEYALR   67 (463)
T ss_pred             ccCChhHHHHHHHHHHHH
Confidence            999999999998887665

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.65  E-value=2e-05  Score=73.39  Aligned_cols=34  Identities=35%  Similarity=0.867  Sum_probs=28.9

Q ss_pred             CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975          117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN  160 (348)
Q Consensus       117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~  160 (348)
                      ....|+||+..|..        |  ++++|+|.||..||..+|.
T Consensus        12 ~~~~C~iC~~~~~~--------p--~~l~C~H~~c~~C~~~~~~   45 (386)
T KOG2177|consen   12 EELTCPICLEYFRE--------P--VLLPCGHNFCRACLTRSWE   45 (386)
T ss_pred             ccccChhhHHHhhc--------C--ccccccchHhHHHHHHhcC
Confidence            35799999999976        4  3589999999999999974

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.55  E-value=3.2e-05  Score=74.92  Aligned_cols=36  Identities=25%  Similarity=0.769  Sum_probs=26.3

Q ss_pred             CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975          119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN  160 (348)
Q Consensus       119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~  160 (348)
                      ..|.||.+.|-...+..   |+   -.|+|.||..||..|+.
T Consensus         5 A~C~Ic~d~~p~~~~l~---~i---~~cGhifh~~cl~qwfe   40 (465)
T KOG0827|consen    5 AECHICIDGRPNDHELG---PI---GTCGHIFHTTCLTQWFE   40 (465)
T ss_pred             ceeeEeccCCccccccc---cc---cchhhHHHHHHHHHHHc
Confidence            68999966654443332   21   25999999999999986

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.48  E-value=5.2e-05  Score=60.40  Aligned_cols=16  Identities=50%  Similarity=1.207  Sum_probs=15.2

Q ss_pred             CCCCcccHHHHHHHHH
Q 018975          145 SCFHCFHSECIVRWWN  160 (348)
Q Consensus       145 ~C~H~FH~~Cl~~w~~  160 (348)
                      .|.|.||.+||.+|++
T Consensus        80 ~CNHaFH~hCisrWlk   95 (114)
T KOG2930|consen   80 VCNHAFHFHCISRWLK   95 (114)
T ss_pred             ecchHHHHHHHHHHHh
Confidence            7999999999999986

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=97.39  E-value=3.5e-05  Score=80.18  Aligned_cols=51  Identities=29%  Similarity=0.544  Sum_probs=38.9

Q ss_pred             CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975          117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT  196 (348)
Q Consensus       117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (348)
                      ....|++||..|.+....      .+ -.|.||||.+||..|-+                                ...+
T Consensus       122 ~~~~CP~Ci~s~~DqL~~------~~-k~c~H~FC~~Ci~sWsR--------------------------------~aqT  162 (1134)
T KOG0825|consen  122 VENQCPNCLKSCNDQLEE------SE-KHTAHYFCEECVGSWSR--------------------------------CAQT  162 (1134)
T ss_pred             hhhhhhHHHHHHHHHhhc------cc-cccccccHHHHhhhhhh--------------------------------hccc
Confidence            346799999988654321      12 69999999999999964                                4568


Q ss_pred             CCCCCcccCc
Q 018975          197 CPVCRKVFHV  206 (348)
Q Consensus       197 CPvCR~~~~~  206 (348)
                      ||+||..|..
T Consensus       163 CPiDR~EF~~  172 (1134)
T KOG0825|consen  163 CPVDRGEFGE  172 (1134)
T ss_pred             Cchhhhhhhe
Confidence            9999987754

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.34  E-value=0.00011  Score=69.32  Aligned_cols=49  Identities=29%  Similarity=0.596  Sum_probs=37.2

Q ss_pred             CCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCC
Q 018975          118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTC  197 (348)
Q Consensus       118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C  197 (348)
                      ..+|+||+..-.        .|.  .+.|+|.||..||.--..                               ..+..|
T Consensus         7 ~~eC~IC~nt~n--------~Pv--~l~C~HkFCyiCiKGsy~-------------------------------ndk~~C   45 (324)
T KOG0824|consen    7 KKECLICYNTGN--------CPV--NLYCFHKFCYICIKGSYK-------------------------------NDKKTC   45 (324)
T ss_pred             CCcceeeeccCC--------cCc--cccccchhhhhhhcchhh-------------------------------cCCCCC
Confidence            579999997642        252  389999999999965321                               256789


Q ss_pred             CCCCcccCcc
Q 018975          198 PVCRKVFHVK  207 (348)
Q Consensus       198 PvCR~~~~~~  207 (348)
                      +|||.+|+..
T Consensus        46 avCR~pids~   55 (324)
T KOG0824|consen   46 AVCRFPIDST   55 (324)
T ss_pred             ceecCCCCcc
Confidence            9999999764

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.29  E-value=7.2e-05  Score=52.80  Aligned_cols=46  Identities=26%  Similarity=0.624  Sum_probs=36.2

Q ss_pred             CCCCCccccccccCCCCccccCcccccCCCCc-ccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975          118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHC-FHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT  196 (348)
Q Consensus       118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~-FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (348)
                      +.+|.||++.-.+  .        .+-.|+|. ++.+|-.+.|.                               ..++.
T Consensus         7 ~dECTICye~pvd--s--------VlYtCGHMCmCy~Cg~rl~~-------------------------------~~~g~   45 (62)
T KOG4172|consen    7 SDECTICYEHPVD--S--------VLYTCGHMCMCYACGLRLKK-------------------------------ALHGC   45 (62)
T ss_pred             ccceeeeccCcch--H--------HHHHcchHHhHHHHHHHHHH-------------------------------ccCCc
Confidence            4799999986432  1        24689995 88999999876                               46789


Q ss_pred             CCCCCccc
Q 018975          197 CPVCRKVF  204 (348)
Q Consensus       197 CPvCR~~~  204 (348)
                      ||+||.+|
T Consensus        46 CPiCRapi   53 (62)
T KOG4172|consen   46 CPICRAPI   53 (62)
T ss_pred             CcchhhHH
Confidence            99999988

>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.29  E-value=0.00034  Score=63.34  Aligned_cols=49  Identities=24%  Similarity=0.532  Sum_probs=37.0

Q ss_pred             HHHHHHHHhhhCCCCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975          103 LCEEAVAKLSAMNHPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN  160 (348)
Q Consensus       103 lie~~kE~Lte~n~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~  160 (348)
                      +++....+|.+.+ -...|.+|-..+..+|..        ++-|||.||..||..|-.
T Consensus        36 iVQSYLqWL~DsD-Y~pNC~LC~t~La~gdt~--------RLvCyhlfHW~ClneraA   84 (299)
T KOG3970|consen   36 IVQSYLQWLQDSD-YNPNCRLCNTPLASGDTT--------RLVCYHLFHWKCLNERAA   84 (299)
T ss_pred             hHHHHHHHHhhcC-CCCCCceeCCccccCcce--------eehhhhhHHHHHhhHHHh
Confidence            3444555666653 346899999999887753        489999999999999954

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=97.16  E-value=0.00023  Score=71.51  Aligned_cols=65  Identities=29%  Similarity=0.470  Sum_probs=48.7

Q ss_pred             hhCCCCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCC
Q 018975          112 SAMNHPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPID  191 (348)
Q Consensus       112 te~n~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (348)
                      .+.|.....|.+|-++-.+        ++.  ++|.|.||.-||..|++....                           
T Consensus       530 ~~enk~~~~C~lc~d~aed--------~i~--s~ChH~FCrlCi~eyv~~f~~---------------------------  572 (791)
T KOG1002|consen  530 PDENKGEVECGLCHDPAED--------YIE--SSCHHKFCRLCIKEYVESFME---------------------------  572 (791)
T ss_pred             CccccCceeecccCChhhh--------hHh--hhhhHHHHHHHHHHHHHhhhc---------------------------
Confidence            3445677899999988432        233  899999999999999874332                           


Q ss_pred             CCCCCCCCCCcccCccchHHHH
Q 018975          192 GNMGTCPVCRKVFHVKDLEHVL  213 (348)
Q Consensus       192 ~~~~~CPvCR~~~~~~d~~~~~  213 (348)
                      ...++||+|-..+..++-+|.+
T Consensus       573 ~~nvtCP~C~i~LsiDlse~al  594 (791)
T KOG1002|consen  573 NNNVTCPVCHIGLSIDLSEPAL  594 (791)
T ss_pred             ccCCCCccccccccccccchhh
Confidence            2348999999999887666555

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.99  E-value=8.6e-05  Score=71.33  Aligned_cols=50  Identities=32%  Similarity=0.676  Sum_probs=38.2

Q ss_pred             CCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCC
Q 018975          118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTC  197 (348)
Q Consensus       118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C  197 (348)
                      ...|+|||.-+...        .+ .+.|.|-||..||..-+.                               .....|
T Consensus        43 ~v~c~icl~llk~t--------mt-tkeClhrfc~~ci~~a~r-------------------------------~gn~ec   82 (381)
T KOG0311|consen   43 QVICPICLSLLKKT--------MT-TKECLHRFCFDCIWKALR-------------------------------SGNNEC   82 (381)
T ss_pred             hhccHHHHHHHHhh--------cc-cHHHHHHHHHHHHHHHHH-------------------------------hcCCCC
Confidence            46899999988642        22 368999999999977654                               345679


Q ss_pred             CCCCcccCcc
Q 018975          198 PVCRKVFHVK  207 (348)
Q Consensus       198 PvCR~~~~~~  207 (348)
                      |-||+.+..+
T Consensus        83 ptcRk~l~Sk   92 (381)
T KOG0311|consen   83 PTCRKKLVSK   92 (381)
T ss_pred             chHHhhcccc
Confidence            9999987543

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.79  E-value=0.00063  Score=65.73  Aligned_cols=47  Identities=26%  Similarity=0.627  Sum_probs=34.3

Q ss_pred             CCCCCccccccccCCCCccccCcccccCCCCc-ccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975          118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHC-FHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT  196 (348)
Q Consensus       118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~-FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (348)
                      ..+|+|||..-.+          +.+|+|.|. .|+.|-.. |+ .|                              +..
T Consensus       290 gkeCVIClse~rd----------t~vLPCRHLCLCs~Ca~~-Lr-~q------------------------------~n~  327 (349)
T KOG4265|consen  290 GKECVICLSESRD----------TVVLPCRHLCLCSGCAKS-LR-YQ------------------------------TNN  327 (349)
T ss_pred             CCeeEEEecCCcc----------eEEecchhhehhHhHHHH-HH-Hh------------------------------hcC
Confidence            4689999988653          135899995 89999644 33 22                              357


Q ss_pred             CCCCCcccCc
Q 018975          197 CPVCRKVFHV  206 (348)
Q Consensus       197 CPvCR~~~~~  206 (348)
                      ||+||.+|..
T Consensus       328 CPICRqpi~~  337 (349)
T KOG4265|consen  328 CPICRQPIEE  337 (349)
T ss_pred             CCccccchHh
Confidence            9999999854

>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]

Probab=96.78  E-value=0.0012  Score=69.82  Aligned_cols=52  Identities=27%  Similarity=0.595  Sum_probs=38.8

Q ss_pred             hhHHHHHHHHHhhhCCCCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975          100 LVALCEEAVAKLSAMNHPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN  160 (348)
Q Consensus       100 l~elie~~kE~Lte~n~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~  160 (348)
                      ...+.+.+++.|...   ..+|.||++.+.....      .--...|||+||..||..|-.
T Consensus       176 ~~~~~~~li~~l~~~---~yeCmIC~e~I~~t~~------~WSC~sCYhVFHl~CI~~WAr  227 (950)
T KOG1952|consen  176 DLTLTQSLIEQLSNR---KYECMICTERIKRTAP------VWSCKSCYHVFHLNCIKKWAR  227 (950)
T ss_pred             hHHHHHHHHHHHhcC---ceEEEEeeeeccccCC------ceecchhhhhhhHHHHHHHHH
Confidence            555556666666544   4899999998876543      333578999999999999976

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=96.73  E-value=0.00039  Score=66.39  Aligned_cols=51  Identities=31%  Similarity=0.722  Sum_probs=41.5

Q ss_pred             CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCC
Q 018975          116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMG  195 (348)
Q Consensus       116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (348)
                      .+...|.+|-..|.+...         .+.|.|-||..||.+||.                                ...
T Consensus        13 n~~itC~LC~GYliDATT---------I~eCLHTFCkSCivk~l~--------------------------------~~~   51 (331)
T KOG2660|consen   13 NPHITCRLCGGYLIDATT---------ITECLHTFCKSCIVKYLE--------------------------------ESK   51 (331)
T ss_pred             ccceehhhccceeecchh---------HHHHHHHHHHHHHHHHHH--------------------------------Hhc
Confidence            367899999988876332         479999999999999986                                356


Q ss_pred             CCCCCCcccCcc
Q 018975          196 TCPVCRKVFHVK  207 (348)
Q Consensus       196 ~CPvCR~~~~~~  207 (348)
                      .||+|.-.++..
T Consensus        52 ~CP~C~i~ih~t   63 (331)
T KOG2660|consen   52 YCPTCDIVIHKT   63 (331)
T ss_pred             cCCccceeccCc
Confidence            899999888654

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.68  E-value=0.0011  Score=64.72  Aligned_cols=62  Identities=26%  Similarity=0.534  Sum_probs=42.6

Q ss_pred             CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCC
Q 018975          116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMG  195 (348)
Q Consensus       116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (348)
                      ..+..|.||++...+.-  .....|-.+..|.|.||..||..|-...|...                         ....
T Consensus       159 s~~k~CGICme~i~ek~--~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~-------------------------~~sk  211 (344)
T KOG1039|consen  159 SSEKECGICMETINEKA--ASERRFGILPNCNHSFCLNCIRKWRQATQFES-------------------------KTSK  211 (344)
T ss_pred             cccccceehhhhccccc--hhhhhcccCCCcchhhhhcHhHhhhhhhcccc-------------------------cccc
Confidence            34689999999986533  11222444468999999999999965333210                         2346


Q ss_pred             CCCCCCccc
Q 018975          196 TCPVCRKVF  204 (348)
Q Consensus       196 ~CPvCR~~~  204 (348)
                      .||.||...
T Consensus       212 sCP~CRv~s  220 (344)
T KOG1039|consen  212 SCPFCRVPS  220 (344)
T ss_pred             CCCcccCcc
Confidence            799999876

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=96.47  E-value=0.025  Score=59.48  Aligned_cols=116  Identities=12%  Similarity=0.186  Sum_probs=74.9

Q ss_pred             HHHHHHHHHhhcCCC-ceeccCCCCeeEEEEec-CCCCCCCCcceEEEEEEEcCCCCCCC-CCcccccCCCCCCHHHHHH
Q 018975            6 VAMELEAVQAVYGDE-CVVLDSYPPHLHLRIKP-RTADVSSQQFVEAVIGIRASPKYPEH-PPRIDLIESKGLDDQRQKH   82 (348)
Q Consensus         6 ~~~ElEAL~sIY~dd-~~v~~~~~~~~~i~i~p-~~~~~~~~~~v~i~L~i~lp~~YP~~-~P~i~i~~~~GL~~~~i~~   82 (348)
                      +.+|+-++--=|..= |+-++...+.++|.+.- ...+   ..|+-+.|.|.||.+||.. +|.+.+.++..+...+.++
T Consensus       425 LgeE~S~Ig~k~~nV~fEkidva~Rsctvsln~p~~~~---d~y~flrm~V~FP~nYPn~a~P~Fq~e~~s~~t~~~~~~  501 (1081)
T KOG0309|consen  425 LGEEFSLIGVKIRNVNFEKIDVADRSCTVSLNCPNHRV---DDYIFLRMLVKFPANYPNNAAPSFQFENPSTITSTMKAK  501 (1081)
T ss_pred             HHhHHhHhhccccccceEeeccccceEEEEecCCCCcc---ccceeEEEEEeccccCCCCCCCceEEecCccccHHHHHH
Confidence            445555555444431 33233445677777753 2222   3688899999999999986 7888899999999999999


Q ss_pred             HHHHHHHHHHHhc--CCchhhHHHHHHHHHhhhCCCCCCCCCccccccccC
Q 018975           83 LISCIQDKAHELT--SCLMLVALCEEAVAKLSAMNHPDGDCPLCLYPLFRK  131 (348)
Q Consensus        83 L~~~L~~~~ee~~--G~~ml~elie~~kE~Lte~n~~~~~C~ICl~~f~~~  131 (348)
                      |++.|..++....  |.-++-..+..+..+|.       .=.+|+..|..+
T Consensus       502 ~l~~L~~i~~q~v~s~~yClepClr~l~gnls-------ld~~~~~sf~~~  545 (1081)
T KOG0309|consen  502 LLKILKDIALQKVKSGQYCLEPCLRQLVGNLS-------LDSSCLESFVNQ  545 (1081)
T ss_pred             HHHHHHHHHHHHhhcCchHHHHHHHHHhcccc-------hhhHHHhhcccc
Confidence            9999999887765  44344443444433332       114556666553

>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.27  E-value=0.0039  Score=54.71  Aligned_cols=67  Identities=21%  Similarity=0.467  Sum_probs=43.6

Q ss_pred             CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975          117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT  196 (348)
Q Consensus       117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (348)
                      ..+.|.||+-.-..+.-.+.++-   -.+|+.-||.-||..|++-+-+..+.                     .+---+.
T Consensus       164 ~~~~cgicyayqldGTipDqtCd---N~qCgkpFHqiCL~dWLRgilTsRQS---------------------FdiiFGe  219 (234)
T KOG3268|consen  164 ELGACGICYAYQLDGTIPDQTCD---NIQCGKPFHQICLTDWLRGILTSRQS---------------------FDIIFGE  219 (234)
T ss_pred             hhhcccceeeeecCCcccccccc---ccccCCcHHHHHHHHHHHHHhhccce---------------------eeeeecc
Confidence            45799999755444433333322   25899999999999999855432211                     0123467


Q ss_pred             CCCCCcccCcc
Q 018975          197 CPVCRKVFHVK  207 (348)
Q Consensus       197 CPvCR~~~~~~  207 (348)
                      ||.|-.++..|
T Consensus       220 CPYCS~PialK  230 (234)
T KOG3268|consen  220 CPYCSDPIALK  230 (234)
T ss_pred             CCCCCCcceee
Confidence            99999999653

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=96.26  E-value=0.0016  Score=47.10  Aligned_cols=33  Identities=30%  Similarity=0.622  Sum_probs=23.8

Q ss_pred             CCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHH
Q 018975          118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWW  159 (348)
Q Consensus       118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~  159 (348)
                      ...|||.+..|.+        |.. -+.|+|.|-...|..|+
T Consensus        11 ~~~CPiT~~~~~~--------PV~-s~~C~H~fek~aI~~~i   43 (57)
T PF11789_consen   11 SLKCPITLQPFED--------PVK-SKKCGHTFEKEAILQYI   43 (57)
T ss_dssp             -SB-TTTSSB-SS--------EEE-ESSS--EEEHHHHHHHC
T ss_pred             ccCCCCcCChhhC--------CcC-cCCCCCeecHHHHHHHH
Confidence            4789999999975        544 36999999999999996

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.91  E-value=0.0086  Score=56.58  Aligned_cols=32  Identities=44%  Similarity=0.707  Sum_probs=24.6

Q ss_pred             CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHH
Q 018975          119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWW  159 (348)
Q Consensus       119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~  159 (348)
                      ..|+.|-..+..        | +|.-.|+|.||.+||..-|
T Consensus       275 LkCplc~~Llrn--------p-~kT~cC~~~fc~eci~~al  306 (427)
T COG5222         275 LKCPLCHCLLRN--------P-MKTPCCGHTFCDECIGTAL  306 (427)
T ss_pred             ccCcchhhhhhC--------c-ccCccccchHHHHHHhhhh
Confidence            689999988764        2 3423689999999998765

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=95.89  E-value=0.0083  Score=48.17  Aligned_cols=34  Identities=32%  Similarity=0.690  Sum_probs=27.4

Q ss_pred             CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHH
Q 018975          116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVR  157 (348)
Q Consensus       116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~  157 (348)
                      .+...|++|-..|...       +|. +.+|+|+||..|+.|
T Consensus        76 ~~~~~C~vC~k~l~~~-------~f~-~~p~~~v~H~~C~~r  109 (109)
T PF10367_consen   76 TESTKCSVCGKPLGNS-------VFV-VFPCGHVVHYSCIKR  109 (109)
T ss_pred             CCCCCccCcCCcCCCc-------eEE-EeCCCeEEecccccC
Confidence            5667899999999652       366 489999999999854

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.87  E-value=0.011  Score=63.20  Aligned_cols=39  Identities=41%  Similarity=0.927  Sum_probs=33.5

Q ss_pred             CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHh
Q 018975          116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWL  162 (348)
Q Consensus       116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~  162 (348)
                      .|...|.+|..+|...       ||+. -+|+|+||..||.+....+
T Consensus       815 ep~d~C~~C~~~ll~~-------pF~v-f~CgH~FH~~Cl~~~v~~~  853 (911)
T KOG2034|consen  815 EPQDSCDHCGRPLLIK-------PFYV-FPCGHCFHRDCLIRHVLSL  853 (911)
T ss_pred             cCccchHHhcchhhcC-------ccee-eeccchHHHHHHHHHHHcc
Confidence            6788999999999753       7996 8999999999999987643

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=95.83  E-value=0.055  Score=53.16  Aligned_cols=115  Identities=18%  Similarity=0.395  Sum_probs=60.0

Q ss_pred             CCCHHHHHHHHHHHHHHHHHhcCCchhhHHHH----HHHHHhhh--------CCCCCCCCCcccccccc---------CC
Q 018975           74 GLDDQRQKHLISCIQDKAHELTSCLMLVALCE----EAVAKLSA--------MNHPDGDCPLCLYPLFR---------KD  132 (348)
Q Consensus        74 GL~~~~i~~L~~~L~~~~ee~~G~~ml~elie----~~kE~Lte--------~n~~~~~C~ICl~~f~~---------~~  132 (348)
                      .|...+...|...|..-+....+-.+--++.+    ..++.+..        .......|--|+..-..         ++
T Consensus       215 rlns~~y~~L~~kL~~PI~~~~ni~i~~tl~drF~e~F~~~V~~Np~y~~~~~~~e~e~CigC~~~~~~vkl~k~C~~~~  294 (358)
T PF10272_consen  215 RLNSSEYRDLREKLRAPIRIARNIVIHQTLSDRFVEAFKEQVEQNPRYSYPESGQELEPCIGCMQAQPNVKLVKRCADEE  294 (358)
T ss_pred             EEcHHHHHHHHHHhhCccccCCCceECCCHHHHHHHHHHHHHHhCCccccCCCccccCCccccccCCCCcEEEeccCCcc
Confidence            36667777788777764443333222222322    22332222        12445678888764221         01


Q ss_pred             CCccccCcccccCCCCcc-----cHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCCCCCcccCcc
Q 018975          133 KNVEVLPFMKLMSCFHCF-----HSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCPVCRKVFHVK  207 (348)
Q Consensus       133 ~~~~~~p~~k~~~C~H~F-----H~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CPvCR~~~~~~  207 (348)
                      ..+..++.  ...|..||     |.+|+.+||-..|.+.        +.      ..+.     ..+.+||.||+.|..-
T Consensus       295 ~~g~~~~~--~~~C~~C~CRPmWC~~Cm~kwFasrQd~~--------~~------~~Wl-----~~~~~CPtCRa~FCil  353 (358)
T PF10272_consen  295 QEGSPLPN--EPPCQQCYCRPMWCLECMGKWFASRQDQQ--------HP------ETWL-----SGKCPCPTCRAKFCIL  353 (358)
T ss_pred             cCCccccc--CCCCccccccchHHHHHHHHHhhhcCCCC--------Ch------hhhh-----cCCCCCCCCcccceee
Confidence            11111221  24666665     6899999997444211        00      0111     4678999999999765


Q ss_pred             ch
Q 018975          208 DL  209 (348)
Q Consensus       208 d~  209 (348)
                      |+
T Consensus       354 DV  355 (358)
T PF10272_consen  354 DV  355 (358)
T ss_pred             ee
Confidence            53

They are purported to be transmembrane protein-precursors but their function is unknown.

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.75  E-value=0.0055  Score=60.98  Aligned_cols=48  Identities=29%  Similarity=0.703  Sum_probs=38.1

Q ss_pred             CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975          117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT  196 (348)
Q Consensus       117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (348)
                      ....|.||+.-|..        |.+  |+|+|.|+..||.+-++                                ....
T Consensus        83 sef~c~vc~~~l~~--------pv~--tpcghs~c~~Cl~r~ld--------------------------------~~~~  120 (398)
T KOG4159|consen   83 SEFECCVCSRALYP--------PVV--TPCGHSFCLECLDRSLD--------------------------------QETE  120 (398)
T ss_pred             chhhhhhhHhhcCC--------Ccc--ccccccccHHHHHHHhc--------------------------------cCCC
Confidence            35799999888864        433  79999999999999543                                3457


Q ss_pred             CCCCCcccCc
Q 018975          197 CPVCRKVFHV  206 (348)
Q Consensus       197 CPvCR~~~~~  206 (348)
                      ||.||..+..
T Consensus       121 cp~Cr~~l~e  130 (398)
T KOG4159|consen  121 CPLCRDELVE  130 (398)
T ss_pred             Cccccccccc
Confidence            9999999864

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=95.73  E-value=0.004  Score=55.57  Aligned_cols=31  Identities=29%  Similarity=0.554  Sum_probs=25.6

Q ss_pred             CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHH
Q 018975          119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWW  159 (348)
Q Consensus       119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~  159 (348)
                      ..|.||-..|..        |++  +.|+|+||..|.++=+
T Consensus       197 F~C~iCKkdy~s--------pvv--t~CGH~FC~~Cai~~y  227 (259)
T COG5152         197 FLCGICKKDYES--------PVV--TECGHSFCSLCAIRKY  227 (259)
T ss_pred             eeehhchhhccc--------hhh--hhcchhHHHHHHHHHh
Confidence            379999998864        544  8999999999988754

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.36  E-value=0.0061  Score=59.53  Aligned_cols=36  Identities=25%  Similarity=0.516  Sum_probs=27.1

Q ss_pred             CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975          119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN  160 (348)
Q Consensus       119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~  160 (348)
                      ..|..|-+.+-..++..      .-++|.|+||..|+..++.
T Consensus       366 L~Cg~CGe~~Glk~e~L------qALpCsHIfH~rCl~e~L~  401 (518)
T KOG1941|consen  366 LYCGLCGESIGLKNERL------QALPCSHIFHLRCLQEILE  401 (518)
T ss_pred             hhhhhhhhhhcCCcccc------cccchhHHHHHHHHHHHHH
Confidence            57999977665544421      2389999999999999974

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.24  E-value=0.017  Score=55.30  Aligned_cols=59  Identities=20%  Similarity=0.528  Sum_probs=44.8

Q ss_pred             CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCC
Q 018975          119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCP  198 (348)
Q Consensus       119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP  198 (348)
                      ..|.||-.+|+.++..  ..|..  +.|+|.|+..|+...+.                               .....||
T Consensus         4 ~~c~~c~~~~s~~~~~--~~p~~--l~c~h~~c~~c~~~l~~-------------------------------~~~i~cp   48 (296)
T KOG4185|consen    4 PECEICNEDYSSEDGD--HIPRV--LKCGHTICQNCASKLLG-------------------------------NSRILCP   48 (296)
T ss_pred             CceeecCccccccCcc--cCCcc--cccCceehHhHHHHHhc-------------------------------Cceeecc
Confidence            5899999999987433  34654  78999999999988754                               4667899


Q ss_pred             CCCcc--cCccchHHH
Q 018975          199 VCRKV--FHVKDLEHV  212 (348)
Q Consensus       199 vCR~~--~~~~d~~~~  212 (348)
                      -||++  +...+++.+
T Consensus        49 fcR~~~~~~~~~~~~l   64 (296)
T KOG4185|consen   49 FCRETTEIPDGDVKSL   64 (296)
T ss_pred             CCCCcccCCchhHhhh
Confidence            99998  555554433

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.19  E-value=0.0073  Score=57.06  Aligned_cols=30  Identities=27%  Similarity=0.731  Sum_probs=25.0

Q ss_pred             CCCccccccccCCCCccccCcccccCCCCcccHHHHHHHH
Q 018975          120 DCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWW  159 (348)
Q Consensus       120 ~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~  159 (348)
                      .|-||-..|..        |++  +.|+||||..|-..-+
T Consensus       243 ~c~icr~~f~~--------pVv--t~c~h~fc~~ca~~~~  272 (313)
T KOG1813|consen  243 KCFICRKYFYR--------PVV--TKCGHYFCEVCALKPY  272 (313)
T ss_pred             ccccccccccc--------chh--hcCCceeehhhhcccc
Confidence            59999999975        433  8999999999987764

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=95.18  E-value=0.011  Score=58.94  Aligned_cols=36  Identities=25%  Similarity=0.579  Sum_probs=28.8

Q ss_pred             CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975          116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN  160 (348)
Q Consensus       116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~  160 (348)
                      ..+..|+||...+.+        |+- .+.|+|-||..|+..|+.
T Consensus        19 ~~~l~C~~C~~vl~~--------p~~-~~~cgh~fC~~C~~~~~~   54 (391)
T KOG0297|consen   19 DENLLCPICMSVLRD--------PVQ-TTTCGHRFCAGCLLESLS   54 (391)
T ss_pred             cccccCccccccccC--------CCC-CCCCCCcccccccchhhc
Confidence            445799999999864        333 159999999999999975

>PLN00172 ubiquitin conjugating enzyme; Provisional

Probab=94.78  E-value=0.11  Score=44.70  Aligned_cols=69  Identities=19%  Similarity=0.193  Sum_probs=44.7

Q ss_pred             CCHHHHHHHHHHHHhhcCCCceeccC--CCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccC
Q 018975            1 MAEEEVAMELEAVQAVYGDECVVLDS--YPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIE   71 (348)
Q Consensus         1 m~~Ee~~~ElEAL~sIY~dd~~v~~~--~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~   71 (348)
                      |+.-.+..|+..|..--...+.+...  .-..+.+.|....+  ..=..-.+.+.|.||++||..||.+.+..
T Consensus         1 ma~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~--tpyegg~f~~~i~fp~~YP~~pP~v~f~t   71 (147)
T PLN00172          1 MATKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSD--SPYAGGVFFLSILFPPDYPFKPPKVQFTT   71 (147)
T ss_pred             ChHHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCC--CCCCCCEEEEEEECCcccCCCCCEEEEec
Confidence            78788999999997644444433322  12355566652211  11112357899999999999999998754

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.74  E-value=0.012  Score=54.28  Aligned_cols=29  Identities=34%  Similarity=0.809  Sum_probs=20.7

Q ss_pred             CCCCccccccccCCCCccccCcccccCCCCcccHHHH
Q 018975          119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECI  155 (348)
Q Consensus       119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl  155 (348)
                      ..|.-|..- ...+      ||. +|.|+|+||..|.
T Consensus         4 VhCn~C~~~-~~~~------~f~-LTaC~HvfC~~C~   32 (233)
T KOG4739|consen    4 VHCNKCFRF-PSQD------PFF-LTACRHVFCEPCL   32 (233)
T ss_pred             EEecccccc-CCCC------cee-eeechhhhhhhhc
Confidence            467767543 2222      577 5999999999996

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=94.67  E-value=0.21  Score=49.18  Aligned_cols=36  Identities=25%  Similarity=0.534  Sum_probs=25.9

Q ss_pred             hCCCCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHH
Q 018975          113 AMNHPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRW  158 (348)
Q Consensus       113 e~n~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w  158 (348)
                      ++...-.-|-||-+.=    +      -+|.-+|+|..|..||..|
T Consensus       364 eMgsTFeLCKICaend----K------dvkIEPCGHLlCt~CLa~W  399 (563)
T KOG1785|consen  364 EMGSTFELCKICAEND----K------DVKIEPCGHLLCTSCLAAW  399 (563)
T ss_pred             HccchHHHHHHhhccC----C------CcccccccchHHHHHHHhh
Confidence            3433445799997652    2      1255799999999999999

>PHA02862 5L protein; Provisional

Probab=94.66  E-value=0.023  Score=48.35  Aligned_cols=53  Identities=17%  Similarity=0.447  Sum_probs=34.4

Q ss_pred             CCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCC
Q 018975          118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTC  197 (348)
Q Consensus       118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C  197 (348)
                      ...|=||+..-.  +...   | -++..-..+-|..||.+|+++.                              ....|
T Consensus         2 ~diCWIC~~~~~--e~~~---P-C~C~GS~K~VHq~CL~~WIn~S------------------------------~k~~C   45 (156)
T PHA02862          2 SDICWICNDVCD--ERNN---F-CGCNEEYKVVHIKCMQLWINYS------------------------------KKKEC   45 (156)
T ss_pred             CCEEEEecCcCC--CCcc---c-ccccCcchhHHHHHHHHHHhcC------------------------------CCcCc
Confidence            367999998732  2110   1 1111225789999999998732                              45679


Q ss_pred             CCCCcccCc
Q 018975          198 PVCRKVFHV  206 (348)
Q Consensus       198 PvCR~~~~~  206 (348)
                      |.|+.++.-
T Consensus        46 eLCkteY~I   54 (156)
T PHA02862         46 NLCKTKYNI   54 (156)
T ss_pred             cCCCCeEEE
Confidence            999998743

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=94.33  E-value=0.025  Score=63.03  Aligned_cols=36  Identities=28%  Similarity=0.685  Sum_probs=25.3

Q ss_pred             CCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975          118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN  160 (348)
Q Consensus       118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~  160 (348)
                      ++.|.||+..-      ..+.|-++ +.|.|.||.+|..+-+.
T Consensus      3486 DDmCmICFTE~------L~AAP~Iq-L~C~HiFHlqC~R~vLE 3521 (3738)
T KOG1428|consen 3486 DDMCMICFTEA------LSAAPAIQ-LDCSHIFHLQCCRRVLE 3521 (3738)
T ss_pred             CceEEEEehhh------hCCCccee-cCCccchhHHHHHHHHH
Confidence            45677776432      23346665 89999999999988765

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=94.33  E-value=0.041  Score=38.23  Aligned_cols=31  Identities=32%  Similarity=0.548  Sum_probs=13.2

Q ss_pred             CCccccccccCCCCccccCcccccCCCCcccHHHHHH
Q 018975          121 CPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVR  157 (348)
Q Consensus       121 C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~  157 (348)
                      ||+|...+...+..     |.- =+|++-++..|..+
T Consensus         1 cp~C~e~~d~~d~~-----~~P-C~Cgf~IC~~C~~~   31 (48)
T PF14570_consen    1 CPLCDEELDETDKD-----FYP-CECGFQICRFCYHD   31 (48)
T ss_dssp             -TTTS-B--CCCTT-------S-STTS----HHHHHH
T ss_pred             CCCcccccccCCCc-----ccc-CcCCCcHHHHHHHH
Confidence            89999999444432     221 36788877777544

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.28  E-value=0.015  Score=56.47  Aligned_cols=28  Identities=21%  Similarity=0.397  Sum_probs=21.4

Q ss_pred             CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHH
Q 018975          119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRW  158 (348)
Q Consensus       119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w  158 (348)
                      ..|.||++.+.+-          +..+|+|.-+  |....
T Consensus       306 ~lcVVcl~e~~~~----------~fvpcGh~cc--ct~cs  333 (355)
T KOG1571|consen  306 DLCVVCLDEPKSA----------VFVPCGHVCC--CTLCS  333 (355)
T ss_pred             CceEEecCCccce----------eeecCCcEEE--chHHH
Confidence            5899999987642          2479999966  87776

>PF04641 Rtf2: Rtf2 RING-finger

Probab=93.89  E-value=0.046  Score=51.56  Aligned_cols=56  Identities=25%  Similarity=0.418  Sum_probs=42.9

Q ss_pred             CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCC
Q 018975          116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMG  195 (348)
Q Consensus       116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (348)
                      .....|||+...|....      .|+-+-+|+|+|-..||..-                                 ....
T Consensus       111 ~~~~~CPvt~~~~~~~~------~fv~l~~cG~V~s~~alke~---------------------------------k~~~  151 (260)
T PF04641_consen  111 EGRFICPVTGKEFNGKH------KFVYLRPCGCVFSEKALKEL---------------------------------KKSK  151 (260)
T ss_pred             CceeECCCCCcccCCce------eEEEEcCCCCEeeHHHHHhh---------------------------------cccc
Confidence            45568999999984322      47777799999999998774                                 1134


Q ss_pred             CCCCCCcccCccchH
Q 018975          196 TCPVCRKVFHVKDLE  210 (348)
Q Consensus       196 ~CPvCR~~~~~~d~~  210 (348)
                      .||+|-++|...|+.
T Consensus       152 ~Cp~c~~~f~~~DiI  166 (260)
T PF04641_consen  152 KCPVCGKPFTEEDII  166 (260)
T ss_pred             cccccCCccccCCEE
Confidence            699999999988764

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.87  E-value=0.043  Score=50.66  Aligned_cols=56  Identities=21%  Similarity=0.256  Sum_probs=45.4

Q ss_pred             CCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCC
Q 018975          118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTC  197 (348)
Q Consensus       118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C  197 (348)
                      ...||||-..+++..      |-..+-+|+|+|..+|..+.+.                                .-..|
T Consensus       221 ryiCpvtrd~LtNt~------~ca~Lr~sg~Vv~~ecvEklir--------------------------------~D~v~  262 (303)
T KOG3039|consen  221 RYICPVTRDTLTNTT------PCAVLRPSGHVVTKECVEKLIR--------------------------------KDMVD  262 (303)
T ss_pred             ceecccchhhhcCcc------ceEEeccCCcEeeHHHHHHhcc--------------------------------ccccc
Confidence            478999999887632      4445579999999999999864                                45789


Q ss_pred             CCCCcccCccchHH
Q 018975          198 PVCRKVFHVKDLEH  211 (348)
Q Consensus       198 PvCR~~~~~~d~~~  211 (348)
                      |||-+++..+||..
T Consensus       263 pv~d~plkdrdiI~  276 (303)
T KOG3039|consen  263 PVTDKPLKDRDIIG  276 (303)
T ss_pred             cCCCCcCcccceEe
Confidence            99999999998763

>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.78  E-value=0.15  Score=50.88  Aligned_cols=65  Identities=20%  Similarity=0.547  Sum_probs=43.3

Q ss_pred             CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975          117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT  196 (348)
Q Consensus       117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (348)
                      +...|.||+..+...+..     |. ...|+|.|+.+|..+|+.-. .                         ..+....
T Consensus       145 ~~~~C~iC~~e~~~~~~~-----f~-~~~C~H~fC~~C~k~~iev~-~-------------------------~~~~~~~  192 (384)
T KOG1812|consen  145 PKEECGICFVEDPEAEDM-----FS-VLKCGHRFCKDCVKQHIEVK-L-------------------------LSGTVIR  192 (384)
T ss_pred             ccccCccCccccccHhhh-----HH-HhcccchhhhHHhHHHhhhh-h-------------------------ccCCCcc
Confidence            457899999554433221     33 47899999999999998622 1                         0135567


Q ss_pred             CCC--CCcccCccchHHHH
Q 018975          197 CPV--CRKVFHVKDLEHVL  213 (348)
Q Consensus       197 CPv--CR~~~~~~d~~~~~  213 (348)
                      ||.  |-..++..+..+++
T Consensus       193 C~~~~C~~~l~~~~c~~ll  211 (384)
T KOG1812|consen  193 CPHDGCESRLTLESCRKLL  211 (384)
T ss_pred             CCCCCCCccCCHHHHhhhc
Confidence            875  87778776665554

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.51  E-value=0.096  Score=55.97  Aligned_cols=30  Identities=33%  Similarity=0.775  Sum_probs=24.7

Q ss_pred             CCCCCccccccccCCCCccccCcccccCCCCcccHHHHH
Q 018975          118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIV  156 (348)
Q Consensus       118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~  156 (348)
                      ...|..|-..+.        +|++- -.|+|.||.+|+.
T Consensus       840 ~skCs~C~~~Ld--------lP~Vh-F~CgHsyHqhC~e  869 (933)
T KOG2114|consen  840 VSKCSACEGTLD--------LPFVH-FLCGHSYHQHCLE  869 (933)
T ss_pred             eeeecccCCccc--------cceee-eecccHHHHHhhc
Confidence            358999987763        48885 7999999999986

>PHA03096 p28-like protein; Provisional

Probab=93.37  E-value=0.048  Score=52.08  Aligned_cols=40  Identities=25%  Similarity=0.300  Sum_probs=30.4

Q ss_pred             CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975          119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN  160 (348)
Q Consensus       119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~  160 (348)
                      -.|.||++.......  ..--|.-+..|.|.|+..|+..|..
T Consensus       179 k~c~ic~e~~~~k~~--~~~~fgil~~c~h~fc~~ci~~wr~  218 (284)
T PHA03096        179 KICGICLENIKAKYI--IKKYYGILSEIKHEFNIFCIKIWMT  218 (284)
T ss_pred             hhcccchhhhhhhcc--ccccccccccCCcHHHHHHHHHHHH
Confidence            689999998775421  1123556679999999999999965

>PTZ00390 ubiquitin-conjugating enzyme; Provisional

Probab=93.25  E-value=0.38  Score=41.70  Aligned_cols=70  Identities=10%  Similarity=0.124  Sum_probs=44.7

Q ss_pred             CCH-HHHHHHHHHHHhhcCCCceeccCCC--CeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            1 MAE-EEVAMELEAVQAVYGDECVVLDSYP--PHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         1 m~~-Ee~~~ElEAL~sIY~dd~~v~~~~~--~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      |+. -.+..|+..|..--+..+.+.....  ..+.+.|....  +..=..-.+.+.|.+|++||..||.|.+...
T Consensus         1 ~~~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~--~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~   73 (152)
T PTZ00390          1 MSISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPD--GTPYEGGYYKLELFLPEQYPMEPPKVRFLTK   73 (152)
T ss_pred             CcHHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCC--CCCCcCcEEEEEEECccccCCCCCEEEEecC
Confidence            443 3688899999875555555543222  35556665221  1111234688999999999999999988653

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=93.19  E-value=0.063  Score=37.14  Aligned_cols=32  Identities=28%  Similarity=0.800  Sum_probs=21.5

Q ss_pred             CCccccccccCCCCccccCcccccCC--C---CcccHHHHHHHHH
Q 018975          121 CPLCLYPLFRKDKNVEVLPFMKLMSC--F---HCFHSECIVRWWN  160 (348)
Q Consensus       121 C~ICl~~f~~~~~~~~~~p~~k~~~C--~---H~FH~~Cl~~w~~  160 (348)
                      |-||+..-.+++      |+.  .+|  .   -+.|..||.+|+.
T Consensus         1 CrIC~~~~~~~~------~li--~pC~C~Gs~~~vH~~CL~~W~~   37 (47)
T PF12906_consen    1 CRICLEGEEEDE------PLI--SPCRCKGSMKYVHRSCLERWIR   37 (47)
T ss_dssp             ETTTTEE-SSSS-------EE---SSS-SSCCGSEECCHHHHHHH
T ss_pred             CeEeCCcCCCCC------cee--cccccCCCcchhHHHHHHHHHH
Confidence            678998754433      344  455  3   4899999999987

>KOG3053 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.64  E-value=0.05  Score=50.53  Aligned_cols=39  Identities=21%  Similarity=0.673  Sum_probs=27.0

Q ss_pred             CCCCCCCccccccccCCCCccccCcccccCC-----CCcccHHHHHHHHH
Q 018975          116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSC-----FHCFHSECIVRWWN  160 (348)
Q Consensus       116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C-----~H~FH~~Cl~~w~~  160 (348)
                      ..+.-|=||+..    |++.....+++  +|     -|.-|..||.+|++
T Consensus        18 e~eR~CWiCF~T----deDn~~a~WV~--PCrCRGt~KWVHqsCL~rWiD   61 (293)
T KOG3053|consen   18 ELERCCWICFAT----DEDNRLAAWVH--PCRCRGTTKWVHQSCLSRWID   61 (293)
T ss_pred             ccceeEEEEecc----Ccccchhhhcc--cccccCccHHHHHHHHHHHHh
Confidence            345679999854    23333334665  66     48899999999987

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.56  E-value=0.098  Score=49.12  Aligned_cols=51  Identities=29%  Similarity=0.653  Sum_probs=37.9

Q ss_pred             CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCC
Q 018975          116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMG  195 (348)
Q Consensus       116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (348)
                      ..+.+||+|-..        -++|+.. .+|+|.||..||..=+.|.                              ...
T Consensus       237 t~~~~C~~Cg~~--------PtiP~~~-~~C~HiyCY~Ci~ts~~~~------------------------------asf  277 (298)
T KOG2879|consen  237 TSDTECPVCGEP--------PTIPHVI-GKCGHIYCYYCIATSRLWD------------------------------ASF  277 (298)
T ss_pred             cCCceeeccCCC--------CCCCeee-ccccceeehhhhhhhhcch------------------------------hhc
Confidence            345689999755        2458774 5799999999998865422                              346


Q ss_pred             CCCCCCcccC
Q 018975          196 TCPVCRKVFH  205 (348)
Q Consensus       196 ~CPvCR~~~~  205 (348)
                      .||.|-+..+
T Consensus       278 ~Cp~Cg~~~~  287 (298)
T KOG2879|consen  278 TCPLCGENVE  287 (298)
T ss_pred             ccCccCCCCc
Confidence            8999998775

>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.55  E-value=1.8  Score=36.92  Aligned_cols=47  Identities=13%  Similarity=0.273  Sum_probs=31.8

Q ss_pred             eEEEEEEEcCCCCCCCCCcccccCCCCCCHHH--HHHHHHHHHHHHHHh
Q 018975           48 VEAVIGIRASPKYPEHPPRIDLIESKGLDDQR--QKHLISCIQDKAHEL   94 (348)
Q Consensus        48 v~i~L~i~lp~~YP~~~P~i~i~~~~GL~~~~--i~~L~~~L~~~~ee~   94 (348)
                      ....|.+.||.+||..+|.|.+..+-+-..-+  -+.-+..|+++|...
T Consensus        76 l~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD~~GnIcLDILkdKWSa~  124 (175)
T KOG0421|consen   76 LKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVDLSGNICLDILKDKWSAV  124 (175)
T ss_pred             cEEEEEEecCCCCCCCCCeeEeeccccCCCccccccchHHHHHHHHHHH
Confidence            46788889999999999999988765433221  223344555666553

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=92.37  E-value=0.15  Score=44.23  Aligned_cols=53  Identities=23%  Similarity=0.471  Sum_probs=35.3

Q ss_pred             CCCCCCCccccccccCCCCccccCcccccCCCC---cccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCC
Q 018975          116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFH---CFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDG  192 (348)
Q Consensus       116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H---~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (348)
                      .....|-||...-.  +.   ..|    =.|..   +-|.+||.+|++.                              .
T Consensus         6 ~~~~~CRIC~~~~~--~~---~~P----C~CkGs~k~VH~sCL~rWi~~------------------------------s   46 (162)
T PHA02825          6 LMDKCCWICKDEYD--VV---TNY----CNCKNENKIVHKECLEEWINT------------------------------S   46 (162)
T ss_pred             CCCCeeEecCCCCC--Cc---cCC----cccCCCchHHHHHHHHHHHhc------------------------------C
Confidence            44678999987632  11   111    24555   7799999999872                              1


Q ss_pred             CCCCCCCCCcccCcc
Q 018975          193 NMGTCPVCRKVFHVK  207 (348)
Q Consensus       193 ~~~~CPvCR~~~~~~  207 (348)
                      ....|+.|..++.-.
T Consensus        47 ~~~~CeiC~~~Y~i~   61 (162)
T PHA02825         47 KNKSCKICNGPYNIK   61 (162)
T ss_pred             CCCcccccCCeEEEE
Confidence            346799999988543

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=92.03  E-value=0.096  Score=50.40  Aligned_cols=29  Identities=38%  Similarity=0.754  Sum_probs=22.6

Q ss_pred             CCCCCCccccccccCCCCccccCcccccCC--CCcccHHHHH
Q 018975          117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSC--FHCFHSECIV  156 (348)
Q Consensus       117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C--~H~FH~~Cl~  156 (348)
                      .-.+||||...+..        |.   ++|  ||.-|+.|-.
T Consensus        47 ~lleCPvC~~~l~~--------Pi---~QC~nGHlaCssC~~   77 (299)
T KOG3002|consen   47 DLLDCPVCFNPLSP--------PI---FQCDNGHLACSSCRT   77 (299)
T ss_pred             hhccCchhhccCcc--------cc---eecCCCcEehhhhhh
Confidence            34699999999875        44   478  7999999954

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=91.93  E-value=0.046  Score=58.17  Aligned_cols=49  Identities=29%  Similarity=0.625  Sum_probs=36.3

Q ss_pred             CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCC
Q 018975          119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCP  198 (348)
Q Consensus       119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP  198 (348)
                      ..|.||+.   .+.      +|.  +.|+|.||..|+...++   .                           .....||
T Consensus       455 ~~c~ic~~---~~~------~~i--t~c~h~~c~~c~~~~i~---~---------------------------~~~~~~~  493 (674)
T KOG1001|consen  455 HWCHICCD---LDS------FFI--TRCGHDFCVECLKKSIQ---Q---------------------------SENAPCP  493 (674)
T ss_pred             cccccccc---ccc------cee--ecccchHHHHHHHhccc---c---------------------------ccCCCCc
Confidence            79999998   211      344  89999999999988764   1                           1223799


Q ss_pred             CCCcccCccc
Q 018975          199 VCRKVFHVKD  208 (348)
Q Consensus       199 vCR~~~~~~d  208 (348)
                      +||..+..++
T Consensus       494 ~cr~~l~~~~  503 (674)
T KOG1001|consen  494 LCRNVLKEKK  503 (674)
T ss_pred             HHHHHHHHHH
Confidence            9999886654

>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.64  E-value=0.84  Score=39.65  Aligned_cols=68  Identities=13%  Similarity=0.080  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHhhcCCCceeccCCC-C--eeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCCC
Q 018975            4 EEVAMELEAVQAVYGDECVVLDSYP-P--HLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIESK   73 (348)
Q Consensus         4 Ee~~~ElEAL~sIY~dd~~v~~~~~-~--~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~~   73 (348)
                      ..+..|++.|+.=-+..+.+....+ .  .+...|...  .+..=..--+.|.+.||.+||..||.|.+...-
T Consensus         8 ~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP--~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i   78 (153)
T COG5078           8 KRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGP--PDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKI   78 (153)
T ss_pred             HHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECC--CCCCcCCCEEEEEEECCCCCCCCCCeeeeccCC
Confidence            4678888888765554444442222 2  233333211  111112234789999999999999999887643

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=91.57  E-value=0.58  Score=40.65  Aligned_cols=40  Identities=23%  Similarity=0.449  Sum_probs=22.5

Q ss_pred             CCCCCccccccccCC------CCccccCcccccCCCCcccHHHHHHHHH
Q 018975          118 DGDCPLCLYPLFRKD------KNVEVLPFMKLMSCFHCFHSECIVRWWN  160 (348)
Q Consensus       118 ~~~C~ICl~~f~~~~------~~~~~~p~~k~~~C~H~FH~~Cl~~w~~  160 (348)
                      +..|||||+.=-+.-      ..-+--|||--|   -+=|+.||.+|-+
T Consensus         2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~T---s~rhSNCLdqfkk   47 (162)
T PF07800_consen    2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDT---SYRHSNCLDQFKK   47 (162)
T ss_pred             CccCceeccCCCceEEEEeccccCCccccccCC---ccchhHHHHHHHH
Confidence            578999997632210      001112444211   3458999999976

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.55  E-value=0.0065  Score=59.29  Aligned_cols=35  Identities=26%  Similarity=0.667  Sum_probs=28.1

Q ss_pred             CCCCccccccccC-CCCccccCcccccCCCCcccHHHHHHHHH
Q 018975          119 GDCPLCLYPLFRK-DKNVEVLPFMKLMSCFHCFHSECIVRWWN  160 (348)
Q Consensus       119 ~~C~ICl~~f~~~-~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~  160 (348)
                      ..|+||...+... ++       .+-..|+|.+|..||..|+.
T Consensus       197 ~sl~I~~~slK~~y~k-------~~~~~~g~~~~~~kL~k~L~  232 (465)
T KOG0827|consen  197 GSLSICFESLKQNYDK-------ISAIVCGHIYHHGKLSKWLA  232 (465)
T ss_pred             hhhHhhHHHHHHHHHH-------HHHHhhcccchhhHHHHHHH
Confidence            5799999998764 22       12368999999999999986

>KOG1940 consensus Zn-finger protein [General function prediction only]

Probab=91.34  E-value=0.12  Score=48.93  Aligned_cols=36  Identities=28%  Similarity=0.612  Sum_probs=27.0

Q ss_pred             CCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHH
Q 018975          118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWW  159 (348)
Q Consensus       118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~  159 (348)
                      ...||||...+......      ...++|+|+.|..|+..+.
T Consensus       158 ~~ncPic~e~l~~s~~~------~~~~~CgH~~h~~cf~e~~  193 (276)
T KOG1940|consen  158 EFNCPICKEYLFLSFED------AGVLKCGHYMHSRCFEEMI  193 (276)
T ss_pred             cCCCchhHHHhcccccc------CCccCcccchHHHHHHHHh
Confidence            45699999888765432      2348999999988887774

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=91.08  E-value=0.095  Score=44.28  Aligned_cols=35  Identities=20%  Similarity=0.485  Sum_probs=26.0

Q ss_pred             CCCCCccccccccCCCCccccCcccccCCC------CcccHHHHHHHH
Q 018975          118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCF------HCFHSECIVRWW  159 (348)
Q Consensus       118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~------H~FH~~Cl~~w~  159 (348)
                      ..+|.||++.+...+.+      +- ++|+      |.||.+|+.+|-
T Consensus        26 ~~EC~IC~~~I~~~~Gv------V~-vt~~g~lnLEkmfc~~C~~rw~   66 (134)
T PF05883_consen   26 TVECQICFDRIDNNDGV------VY-VTDGGTLNLEKMFCADCDKRWR   66 (134)
T ss_pred             CeeehhhhhhhhcCCCE------EE-EecCCeehHHHHHHHHHHHHHH
Confidence            47999999999762322      22 4554      899999999993

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=90.98  E-value=0.16  Score=48.96  Aligned_cols=56  Identities=29%  Similarity=0.678  Sum_probs=39.6

Q ss_pred             CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975          117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT  196 (348)
Q Consensus       117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (348)
                      .++.||+|++++.-.|+.     |.- -+|+-..|..|   |- ++..                           ...+.
T Consensus        13 eed~cplcie~mditdkn-----f~p-c~cgy~ic~fc---~~-~irq---------------------------~lngr   55 (480)
T COG5175          13 EEDYCPLCIEPMDITDKN-----FFP-CPCGYQICQFC---YN-NIRQ---------------------------NLNGR   55 (480)
T ss_pred             ccccCcccccccccccCC-----ccc-CCcccHHHHHH---HH-HHHh---------------------------hccCC
Confidence            346699999999877764     332 58888877777   43 2433                           25689


Q ss_pred             CCCCCcccCccch
Q 018975          197 CPVCRKVFHVKDL  209 (348)
Q Consensus       197 CPvCR~~~~~~d~  209 (348)
                      ||-||...+.+.+
T Consensus        56 cpacrr~y~denv   68 (480)
T COG5175          56 CPACRRKYDDENV   68 (480)
T ss_pred             ChHhhhhccccce
Confidence            9999998876543

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.47  E-value=0.07  Score=50.49  Aligned_cols=52  Identities=15%  Similarity=0.298  Sum_probs=31.1

Q ss_pred             CCchhhHHHHHHHHHhhhCC-----CC---CCCCCccccccccCCCCccccCcccccCCCCc-ccHHHHHH
Q 018975           96 SCLMLVALCEEAVAKLSAMN-----HP---DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHC-FHSECIVR  157 (348)
Q Consensus        96 G~~ml~elie~~kE~Lte~n-----~~---~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~-FH~~Cl~~  157 (348)
                      |.---|++++...+.+.++.     ..   ..-|.||++.-.+  .      |  +++|+|. -|..|-.+
T Consensus       270 gCcek~el~d~vtrl~k~~~g~~~~~s~~~~~LC~ICmDaP~D--C------v--fLeCGHmVtCt~CGkr  330 (350)
T KOG4275|consen  270 GCCEKYELDDRVTRLYKGNDGEQHSRSLATRRLCAICMDAPRD--C------V--FLECGHMVTCTKCGKR  330 (350)
T ss_pred             chhHHHHHHHHHHHHHhcccccccccchhHHHHHHHHhcCCcc--e------E--EeecCcEEeehhhccc
Confidence            44446777766666554432     11   3469999987432  2      3  3799998 45566433

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=90.47  E-value=0.2  Score=48.17  Aligned_cols=53  Identities=28%  Similarity=0.424  Sum_probs=39.4

Q ss_pred             CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975          117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT  196 (348)
Q Consensus       117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (348)
                      ....||||+..-.+..        + +..-+-+||..|+..|++                                ..+.
T Consensus       299 ~~~~CpvClk~r~Npt--------v-l~vSGyVfCY~Ci~~Yv~--------------------------------~~~~  337 (357)
T KOG0826|consen  299 DREVCPVCLKKRQNPT--------V-LEVSGYVFCYPCIFSYVV--------------------------------NYGH  337 (357)
T ss_pred             ccccChhHHhccCCCc--------e-EEecceEEeHHHHHHHHH--------------------------------hcCC
Confidence            3468999998876421        1 244488999999999986                                5688


Q ss_pred             CCCCCcccCccchH
Q 018975          197 CPVCRKVFHVKDLE  210 (348)
Q Consensus       197 CPvCR~~~~~~d~~  210 (348)
                      |||=-.++..+++.
T Consensus       338 CPVT~~p~~v~~l~  351 (357)
T KOG0826|consen  338 CPVTGYPASVDHLI  351 (357)
T ss_pred             CCccCCcchHHHHH
Confidence            99988888666554

>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

Probab=90.32  E-value=1  Score=38.12  Aligned_cols=64  Identities=14%  Similarity=0.141  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHhhcCCCceeccC--CCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCccccc
Q 018975            5 EVAMELEAVQAVYGDECVVLDS--YPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLI   70 (348)
Q Consensus         5 e~~~ElEAL~sIY~dd~~v~~~--~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~   70 (348)
                      .+..|+..|+.--+..+.+...  ....+.+.+.+..+  ..=..-.+.+.|.+|++||..+|.|.+.
T Consensus         3 Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~--t~y~g~~~~~~~~~p~~yP~~pP~v~f~   68 (141)
T cd00195           3 RLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPD--TPYEGGIFKLDIEFPEDYPFKPPKVRFV   68 (141)
T ss_pred             hHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCC--CCccCCEEEEEEECCCccCCCCCeEEEe
Confidence            4667788877655555544432  22355666654311  1112235788999999999999999885

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.

>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]

Probab=89.99  E-value=0.55  Score=39.70  Aligned_cols=64  Identities=19%  Similarity=0.190  Sum_probs=39.8

Q ss_pred             HHHHHHHHHhhcCCCceecc--C-CCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccC
Q 018975            6 VAMELEAVQAVYGDECVVLD--S-YPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIE   71 (348)
Q Consensus         6 ~~~ElEAL~sIY~dd~~v~~--~-~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~   71 (348)
                      +..|+..|+.--...+.+..  + ....+.+.|.+..+  ..=..-.+.+.|.||++||..+|.|.+..
T Consensus         2 l~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~--t~y~gg~f~~~i~~p~~YP~~pP~v~f~t   68 (140)
T PF00179_consen    2 LQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPG--TPYEGGIFKFRISFPPDYPFSPPKVRFLT   68 (140)
T ss_dssp             HHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETT--STTTTSEEEEEEEETTTTTTS--EEEESS
T ss_pred             HHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCc--cceeccccccccccccccccccccccccc
Confidence            56788888765555544442  2 34466666654211  11123358999999999999999998865

Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....

>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues

Probab=89.45  E-value=1.3  Score=37.68  Aligned_cols=65  Identities=17%  Similarity=0.155  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHhhcCCCceeccC---CCCeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            5 EVAMELEAVQAVYGDECVVLDS---YPPHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         5 e~~~ElEAL~sIY~dd~~v~~~---~~~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      .+..|+..|..--+..+.+...   .-..+.+.+. |...   .-....+.+.|.||++||..+|.|.+...
T Consensus         2 Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~---~y~g~~f~~~l~~p~~yP~~pP~v~f~~~   70 (145)
T smart00212        2 RLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGT---PYEGGIFKLTIEFPPDYPFKPPKVKFITK   70 (145)
T ss_pred             hHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCC---CcCCcEEEEEEECCcccCCCCCEEEEeCC
Confidence            3566777777555555544422   2234555555 3221   11234578999999999999999988653

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.

>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=89.39  E-value=0.47  Score=45.01  Aligned_cols=51  Identities=24%  Similarity=0.582  Sum_probs=35.2

Q ss_pred             CCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCCC
Q 018975          120 DCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCPV  199 (348)
Q Consensus       120 ~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CPv  199 (348)
                      .||+|-..---...    +-+| .-+|||-.|-.|+.+-+.                               .....||.
T Consensus         2 ~Cp~CKt~~Y~np~----lk~~-in~C~H~lCEsCvd~iF~-------------------------------~g~~~Cpe   45 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPD----LKLM-INECGHRLCESCVDRIFS-------------------------------LGPAQCPE   45 (300)
T ss_pred             CCcccccceecCcc----ceee-eccccchHHHHHHHHHHh-------------------------------cCCCCCCc
Confidence            58888754322111    1233 349999999999999875                               35679999


Q ss_pred             CCcccCc
Q 018975          200 CRKVFHV  206 (348)
Q Consensus       200 CR~~~~~  206 (348)
                      |-.++-.
T Consensus        46 C~~iLRk   52 (300)
T KOG3800|consen   46 CMVILRK   52 (300)
T ss_pred             ccchhhh
Confidence            9886643

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=89.23  E-value=1.4  Score=37.18  Aligned_cols=55  Identities=22%  Similarity=0.541  Sum_probs=38.6

Q ss_pred             CCCCCCCccccccccCCCCccccCcccccC-CCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCC
Q 018975          116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMS-CFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNM  194 (348)
Q Consensus       116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~-C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (348)
                      .+-.+|.||-+...++.       |.|--. |+-..+..|-+..|.+.                             ...
T Consensus        78 ~~lYeCnIC~etS~ee~-------FLKPneCCgY~iCn~Cya~LWK~~-----------------------------~~y  121 (140)
T PF05290_consen   78 PKLYECNICKETSAEER-------FLKPNECCGYSICNACYANLWKFC-----------------------------NLY  121 (140)
T ss_pred             CCceeccCcccccchhh-------cCCcccccchHHHHHHHHHHHHHc-----------------------------ccC
Confidence            45679999998765432       555334 56668888888887633                             245


Q ss_pred             CCCCCCCcccCc
Q 018975          195 GTCPVCRKVFHV  206 (348)
Q Consensus       195 ~~CPvCR~~~~~  206 (348)
                      -.||+|+..|-.
T Consensus       122 pvCPvCkTSFKs  133 (140)
T PF05290_consen  122 PVCPVCKTSFKS  133 (140)
T ss_pred             CCCCcccccccc
Confidence            689999998843

>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.12  E-value=1.9  Score=37.03  Aligned_cols=69  Identities=19%  Similarity=0.206  Sum_probs=38.9

Q ss_pred             CCHHHHHHHHHHHHhhcCCCceeccCCC--CeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccC
Q 018975            1 MAEEEVAMELEAVQAVYGDECVVLDSYP--PHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIE   71 (348)
Q Consensus         1 m~~Ee~~~ElEAL~sIY~dd~~v~~~~~--~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~   71 (348)
                      |+..++.-|+..|++==+..+..-....  .++...|....+  +.=.---+.|.|.||+.||-.||.|.+..
T Consensus         1 ~a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~--SpYEgG~F~l~I~~p~~YP~~PPkV~F~T   71 (148)
T KOG0417|consen    1 MASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPG--SPYEGGVFFLEIHFPEDYPFKPPKVRFLT   71 (148)
T ss_pred             CcHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCC--CCcCCCEEEEEEECCCCCCCCCCceEeec
Confidence            5556777788877651111111111111  235555543221  11122348999999999999999997754

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=88.64  E-value=0.19  Score=48.06  Aligned_cols=28  Identities=29%  Similarity=0.744  Sum_probs=19.5

Q ss_pred             CCCccccccccCCCCccccCcccccCCCCcccHHHHH
Q 018975          120 DCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIV  156 (348)
Q Consensus       120 ~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~  156 (348)
                      -|.-|-.++.-         +-++.+|.|+||.+|-.
T Consensus        92 fCd~Cd~PI~I---------YGRmIPCkHvFCl~CAr  119 (389)
T KOG2932|consen   92 FCDRCDFPIAI---------YGRMIPCKHVFCLECAR  119 (389)
T ss_pred             eecccCCccee---------eecccccchhhhhhhhh
Confidence            46666655532         33567999999999953

>KOG3899 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.89  E-value=0.18  Score=47.75  Aligned_cols=44  Identities=20%  Similarity=0.493  Sum_probs=27.2

Q ss_pred             CcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCCCCCcccCccchH
Q 018975          148 HCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCPVCRKVFHVKDLE  210 (348)
Q Consensus       148 H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CPvCR~~~~~~d~~  210 (348)
                      -.+|.+||++|+--.|.+..              ... .+    ....+||.||+.|..-|+.
T Consensus       327 p~wc~~cla~~f~~rq~~v~--------------r~~-~~----~~~~~cp~cr~~fci~dv~  370 (381)
T KOG3899|consen  327 PLWCRSCLAQIFIGRQDNVY--------------RYE-YH----RGSAQCPTCRKNFCIRDVH  370 (381)
T ss_pred             cHHHHHHHHHHHhhcccchh--------------HHH-HH----hcCCCCcchhhceEEeeee
Confidence            34568999999864443210              000 00    3567899999999776653

>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=87.81  E-value=0.15  Score=44.24  Aligned_cols=30  Identities=27%  Similarity=0.635  Sum_probs=23.9

Q ss_pred             CCCCCCCccccccccCCCCccccCcccccCCCCcccH
Q 018975          116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHS  152 (348)
Q Consensus       116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~  152 (348)
                      ...++|+|||+.+..+|..      . +++|-.+||.
T Consensus       175 ddkGECvICLEdL~~GdtI------A-RLPCLCIYHK  204 (205)
T KOG0801|consen  175 DDKGECVICLEDLEAGDTI------A-RLPCLCIYHK  204 (205)
T ss_pred             ccCCcEEEEhhhccCCCce------e-ccceEEEeec
Confidence            3458999999999998863      3 4899888884

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=86.98  E-value=0.25  Score=35.24  Aligned_cols=32  Identities=25%  Similarity=0.650  Sum_probs=25.1

Q ss_pred             ccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCCCCCcccCccc
Q 018975          143 LMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCPVCRKVFHVKD  208 (348)
Q Consensus       143 ~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CPvCR~~~~~~d  208 (348)
                      +++|+|+.+..|+.-+                                  .-.-||.|-.+|...|
T Consensus        22 ~~pCgH~I~~~~f~~~----------------------------------rYngCPfC~~~~~~~~   53 (55)
T PF14447_consen   22 VLPCGHLICDNCFPGE----------------------------------RYNGCPFCGTPFEFDD   53 (55)
T ss_pred             cccccceeeccccChh----------------------------------hccCCCCCCCcccCCC
Confidence            4799999999997554                                  2356999999996654

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]

Probab=86.32  E-value=0.37  Score=53.91  Aligned_cols=35  Identities=23%  Similarity=0.374  Sum_probs=27.9

Q ss_pred             CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975          117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN  160 (348)
Q Consensus       117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~  160 (348)
                      ....|.||++-+..-.         -...|+|+|++.|+..|+.
T Consensus      1152 ~~~~c~ic~dil~~~~---------~I~~cgh~~c~~c~~~~l~ 1186 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQG---------GIAGCGHEPCCRCDELWLY 1186 (1394)
T ss_pred             cccchHHHHHHHHhcC---------CeeeechhHhhhHHHHHHH
Confidence            3458999999886422         1379999999999999986

>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]

Probab=86.15  E-value=0.24  Score=51.55  Aligned_cols=17  Identities=29%  Similarity=0.854  Sum_probs=14.6

Q ss_pred             ccccCCCCcccHHHHHH
Q 018975          141 MKLMSCFHCFHSECIVR  157 (348)
Q Consensus       141 ~k~~~C~H~FH~~Cl~~  157 (348)
                      .++..|+++||..|+.+
T Consensus       532 ~rC~~C~avfH~~C~~r  548 (580)
T KOG1829|consen  532 RRCSTCLAVFHKKCLRR  548 (580)
T ss_pred             eeHHHHHHHHHHHHHhc
Confidence            57789999999999754

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=85.06  E-value=0.59  Score=31.66  Aligned_cols=16  Identities=19%  Similarity=0.779  Sum_probs=10.9

Q ss_pred             CCCCcccHHHHHHHHH
Q 018975          145 SCFHCFHSECIVRWWN  160 (348)
Q Consensus       145 ~C~H~FH~~Cl~~w~~  160 (348)
                      .|.=-+|.+|+..||+
T Consensus        18 ~C~~r~H~~C~~~y~r   33 (43)
T PF08746_consen   18 DCNVRLHDDCFKKYFR   33 (43)
T ss_dssp             -S--EE-HHHHHHHTT
T ss_pred             ccCchHHHHHHHHHHh
Confidence            5777899999999975

; PDB: 3NW0_A 2CT0_A.

>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=84.44  E-value=0.58  Score=50.00  Aligned_cols=40  Identities=28%  Similarity=0.721  Sum_probs=29.2

Q ss_pred             hCCCCCCCCCccccccccCCCCccccCcccccCCC-----CcccHHHHHHHHH
Q 018975          113 AMNHPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCF-----HCFHSECIVRWWN  160 (348)
Q Consensus       113 e~n~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~-----H~FH~~Cl~~w~~  160 (348)
                      .+|.++..|-||-.+=..++.      ..  -+|.     .|.|.+||..|+.
T Consensus         7 ~mN~d~~~CRICr~e~~~d~p------Lf--hPCKC~GSIkYiH~eCL~eW~~   51 (1175)
T COG5183           7 PMNEDKRSCRICRTEDIRDDP------LF--HPCKCSGSIKYIHRECLMEWME   51 (1175)
T ss_pred             CCCccchhceeecCCCCCCCc------Cc--ccccccchhHHHHHHHHHHHHh
Confidence            356677899999987655443      22  2554     6899999999976

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=83.48  E-value=0.61  Score=45.27  Aligned_cols=33  Identities=21%  Similarity=0.475  Sum_probs=26.5

Q ss_pred             CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHH
Q 018975          116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRW  158 (348)
Q Consensus       116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w  158 (348)
                      .....|.||-..+.          +..+++|.|-.|-.|-.|.
T Consensus        59 Een~~C~ICA~~~T----------Ys~~~PC~H~~CH~Ca~Rl   91 (493)
T COG5236          59 EENMNCQICAGSTT----------YSARYPCGHQICHACAVRL   91 (493)
T ss_pred             cccceeEEecCCce----------EEEeccCCchHHHHHHHHH
Confidence            34578999998875          3346999999999998875

>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]

Probab=83.30  E-value=0.27  Score=51.95  Aligned_cols=35  Identities=29%  Similarity=0.705  Sum_probs=27.8

Q ss_pred             CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975          116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN  160 (348)
Q Consensus       116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~  160 (348)
                      .-..+|+||+..+..        |  -++.|+|.|+..|+..-+.
T Consensus        19 ~k~lEc~ic~~~~~~--------p--~~~kc~~~~l~~~~n~~f~   53 (684)
T KOG4362|consen   19 QKILECPICLEHVKE--------P--SLLKCDHIFLKFCLNKLFE   53 (684)
T ss_pred             hhhccCCceeEEeec--------c--chhhhhHHHHhhhhhceee
Confidence            345799999999865        2  1489999999999887664

>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=82.65  E-value=0.46  Score=32.84  Aligned_cols=33  Identities=27%  Similarity=0.676  Sum_probs=21.3

Q ss_pred             ccCC-CCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCCCCCcccCcc
Q 018975          143 LMSC-FHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCPVCRKVFHVK  207 (348)
Q Consensus       143 ~~~C-~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CPvCR~~~~~~  207 (348)
                      +..| .||.+..||...+.                                ....||+|.++++.+
T Consensus        15 Li~C~dHYLCl~CLt~ml~--------------------------------~s~~C~iC~~~LPtk   48 (50)
T PF03854_consen   15 LIKCSDHYLCLNCLTLMLS--------------------------------RSDRCPICGKPLPTK   48 (50)
T ss_dssp             EEE-SS-EEEHHHHHHT-S--------------------------------SSSEETTTTEE----
T ss_pred             eeeecchhHHHHHHHHHhc--------------------------------cccCCCcccCcCccc
Confidence            4678 59999999988753                                456899999999763

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.

>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=82.09  E-value=4.5  Score=35.56  Aligned_cols=73  Identities=10%  Similarity=0.177  Sum_probs=42.4

Q ss_pred             eeccCCCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC---CCCCHHHHHHHHHHHHHHHHHhcC
Q 018975           22 VVLDSYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES---KGLDDQRQKHLISCIQDKAHELTS   96 (348)
Q Consensus        22 ~v~~~~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~---~GL~~~~i~~L~~~L~~~~ee~~G   96 (348)
                      .++.+.-..|.++++.....  .=.----.+.|.+|.+||..+|.|-+.+.   .++++.-=..-+.-|...|.....
T Consensus        23 ~~ind~m~ef~V~f~GP~ds--~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~SGsVCLDViNQtWSp~yD   98 (189)
T KOG0416|consen   23 TIINDGMQEFYVKFHGPKDS--PYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEASGSVCLDVINQTWSPLYD   98 (189)
T ss_pred             EEecCcccEEEEEeeCCCCC--cccCceEEEEEECCCCCCCCCCcccceeeccCCCchhccCccHHHHHhhhhhHHHH
Confidence            33444456788888754321  11122357889999999999999977552   244444333334445555655333

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=81.54  E-value=2.5  Score=29.75  Aligned_cols=14  Identities=21%  Similarity=0.567  Sum_probs=10.6

Q ss_pred             CCCCCCCCCcccCc
Q 018975          193 NMGTCPVCRKVFHV  206 (348)
Q Consensus       193 ~~~~CPvCR~~~~~  206 (348)
                      ..+.||+|...+..
T Consensus        30 ~~v~CPiC~~~~~~   43 (54)
T PF05605_consen   30 KNVVCPICSSRVTD   43 (54)
T ss_pred             CCccCCCchhhhhh
Confidence            45789999886654

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=80.74  E-value=1.7  Score=42.35  Aligned_cols=35  Identities=23%  Similarity=0.478  Sum_probs=25.8

Q ss_pred             CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975          116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN  160 (348)
Q Consensus       116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~  160 (348)
                      ..+..||||.-+=-.        ..  ..+|+|--|..||.+++-
T Consensus       420 sEd~lCpICyA~pi~--------Av--f~PC~H~SC~~CI~qHlm  454 (489)
T KOG4692|consen  420 SEDNLCPICYAGPIN--------AV--FAPCSHRSCYGCITQHLM  454 (489)
T ss_pred             cccccCcceecccch--------hh--ccCCCCchHHHHHHHHHh
Confidence            446789999865221        11  369999999999999863

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=80.25  E-value=0.68  Score=48.32  Aligned_cols=36  Identities=22%  Similarity=0.492  Sum_probs=28.1

Q ss_pred             CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975          119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN  160 (348)
Q Consensus       119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~  160 (348)
                      .-|+||+..|..+.-    +|..  +.|+|..|.+|+..-.+
T Consensus        12 l~c~ic~n~f~~~~~----~Pvs--l~cghtic~~c~~~lyn   47 (861)
T KOG3161|consen   12 LLCDICLNLFVVQRL----EPVS--LQCGHTICGHCVQLLYN   47 (861)
T ss_pred             hhchHHHHHHHHHhc----Cccc--ccccchHHHHHHHhHhh
Confidence            379999999986542    3544  79999999999987644

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	348
2day_A	128	Ring finger protein 25; ligase, metal-binding, UB1	4e-21
1ukx_A	137	GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple	2e-18
2ebm_A	128	RWD domain-containing protein 1; alpha+beta sandwi	7e-17
2yz0_A	138	Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-	2e-16
2ebk_A	128	RWD domain-containing protein 3; alpha+beta sandwi	2e-10
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	3e-06
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	9e-06
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	3e-05
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	4e-05
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	5e-05
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	1e-04
2ect_A	78	Ring finger protein 126; metal binding protein, st	2e-04
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	2e-04
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	7e-04
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	8e-04

>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A Length = 128

 Score = 86.9 bits (215), Expect = 4e-21
 Identities = 26/117 (22%), Positives = 54/117 (46%), Gaps = 4/117 (3%)

Query: 3   EEEVAMELEAVQAVYGDECVVLDS----YPPHLHLRIKPRTADVSSQQFVEAVIGIRASP 58
           +  +  E+E ++++Y DE  V+       P  +++ + P TA+    Q+V   + ++   
Sbjct: 10  DWVLPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPA 69

Query: 59  KYPEHPPRIDLIESKGLDDQRQKHLISCIQDKAHELTSCLMLVALCEEAVAKLSAMN 115
           +YP   P+I +   +GL D++   ++  +   A       ML  L E+    LS  +
Sbjct: 70  EYPHEVPQISIRNPRGLSDEQIHTILQVLGHVAKAGLGTAMLYELIEKGKEILSGPS 126

>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3 Length = 137

 Score = 79.3 bits (195), Expect = 2e-18
 Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 8/122 (6%)

Query: 3   EEEVAMELEAVQAVYGDECVVLDS-------YPPHLHLRIKPRTADVSSQQFVEAVIGIR 55
            +    EL+A++A+YG +   L          PP ++L + P+      + +V+  + ++
Sbjct: 12  SQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLYPQGLA-GEEVYVQVELRVK 70

Query: 56  ASPKYPEHPPRIDLIESKGLDDQRQKHLISCIQDKAHELTSCLMLVALCEEAVAKLSAMN 115
             P YP+  P IDL  +KGL ++    L S +++ A +    +M+  L     + LS  N
Sbjct: 71  CPPTYPDVVPEIDLKNAKGLSNESVNLLKSHLEELAKKQCGEVMIFELAHHVQSFLSEHN 130

Query: 116 HP 117
             
Sbjct: 131 KS 132

>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 128

 Score = 75.0 bits (184), Expect = 7e-17
 Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 2/110 (1%)

Query: 3   EEEVAMELEAVQAVYGDECVVLDSYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPE 62
            EE   ELEA++++Y D   VL   PP   + +     +  + + V+  +    S KYP+
Sbjct: 12  GEEQRNELEALESIYPDSFTVLSENPPSFTITVTSEAGE--NDETVQTTLKFTYSEKYPD 69

Query: 63  HPPRIDLIESKGLDDQRQKHLISCIQDKAHELTSCLMLVALCEEAVAKLS 112
             P  ++   + L+D     ++  +  +A E    +M+  L      KL+
Sbjct: 70  EAPLYEIFSQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQEKLN 119

>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae} Length = 138

 Score = 73.9 bits (181), Expect = 2e-16
 Identities = 22/124 (17%), Positives = 42/124 (33%), Gaps = 7/124 (5%)

Query: 3   EEEVAMELEAVQAVYGDECVVLDSYP------PHLHLRIKPRTADVSSQQFVEAVIGIRA 56
            E    ELEA++++Y D+   L          P +   I  R+ D          +    
Sbjct: 12  YEIQCNELEAIRSIYMDDFTDLTKRKSSWDKQPQIIFEITLRSVD-KEPVESSITLHFAM 70

Query: 57  SPKYPEHPPRIDLIESKGLDDQRQKHLISCIQDKAHELTSCLMLVALCEEAVAKLSAMNH 116
           +P YP   P I+    + + D + + L S  +   +      ++  +      KL    +
Sbjct: 71  TPMYPYTAPEIEFKNVQNVMDSQLQMLKSEFKKIHNTSRGQEIIFEITSFTQEKLDEFQN 130

Query: 117 PDGD 120
               
Sbjct: 131 VVNT 134

>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 128

 Score = 56.8 bits (137), Expect = 2e-10
 Identities = 22/106 (20%), Positives = 36/106 (33%), Gaps = 5/106 (4%)

Query: 3   EEEVAMELEAVQAVYGDE---CVVLDSYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPK 59
            E V  EL  + A++       V+  S       RI    A+      +   +       
Sbjct: 9   AEPVQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHT-KAEGFMDADIPLELVFHLPVN 67

Query: 60  YPEHPPRIDLIESKGLDDQRQKHLISCIQDKAHELTSCLMLVALCE 105
           YP   P I  I S+ L   +   +   + ++A  L S  M+  L  
Sbjct: 68  YPSCLPGIS-INSEQLTRAQCVTVKEKLLEQAESLLSEPMVHELVL 112

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 43.0 bits (102), Expect = 3e-06
 Identities = 14/85 (16%), Positives = 19/85 (22%), Gaps = 38/85 (44%)

Query: 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPN 177
              CP+CL  +        VLP      C H  H  C                       
Sbjct: 5   SSGCPICLEDIHTSRVVAHVLP------CGHLLHRTCYEEM------------------- 39

Query: 178 TDMRNQKDMLGPIDGNMGTCPVCRK 202
             ++               CP+C  
Sbjct: 40  --LKEGY-----------RCPLCSG 51

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114

 Score = 43.3 bits (101), Expect = 9e-06
 Identities = 19/113 (16%), Positives = 33/113 (29%), Gaps = 37/113 (32%)

Query: 105 EEAVAKLS--AMNHPDGDCPLCLYPLFRKD--------KNVEVLPFMKLMSCFHCFHSEC 154
           E+ + K +      P+ DC +C+  L            K +  +   +L  C H FH  C
Sbjct: 10  EQVIRKYTEELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLC 69

Query: 155 IVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCPVCRKVFHVK 207
           ++                         N              CP C+ ++  K
Sbjct: 70  LLAM---------------------YCNGNKDGSL------QCPSCKTIYGEK 95

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 40.1 bits (94), Expect = 3e-05
 Identities = 17/89 (19%), Positives = 26/89 (29%), Gaps = 35/89 (39%)

Query: 121 CPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDM 180
           CP+C+       + V+    +    C H F S+C+                         
Sbjct: 6   CPICMDGY---SEIVQNGRLIVSTECGHVFCSQCLRDSL--------------------- 41

Query: 181 RNQKDMLGPIDGNMGTCPVCRKVFHVKDL 209
           +N             TCP CRK  + K  
Sbjct: 42  KNAN-----------TCPTCRKKINHKRY 59

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 40.7 bits (95), Expect = 4e-05
 Identities = 14/95 (14%), Positives = 28/95 (29%), Gaps = 38/95 (40%)

Query: 115 NHPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATV 174
                 C  C     ++D  V          C H FH+ C+  W       ++ ++    
Sbjct: 23  VQVMDACLRCQAENKQEDCVV------VWGECNHSFHNCCMSLW-------VKQNN---- 65

Query: 175 HPNTDMRNQKDMLGPIDGNMGTCPVCRKVFHVKDL 209
                                 CP+C++ + V+ +
Sbjct: 66  ---------------------RCPLCQQDWVVQRI 79

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 40.2 bits (94), Expect = 5e-05
 Identities = 17/89 (19%), Positives = 26/89 (29%), Gaps = 35/89 (39%)

Query: 121 CPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDM 180
           CP+C+       + V+    +    C H F S+C+                         
Sbjct: 13  CPICMDGY---SEIVQNGRLIVSTECGHVFCSQCLRDSL--------------------- 48

Query: 181 RNQKDMLGPIDGNMGTCPVCRKVFHVKDL 209
           +N             TCP CRK  + K  
Sbjct: 49  KNAN-----------TCPTCRKKINHKRY 66

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 21/85 (24%), Positives = 25/85 (29%), Gaps = 39/85 (45%)

Query: 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPN 177
           +  CP+C    + K      LP      C H FH  C+     WLQ              
Sbjct: 40  EMCCPICCSE-YVKGDVATELP------CHHYFHKPCVSI---WLQ----------KS-- 77

Query: 178 TDMRNQKDMLGPIDGNMGTCPVCRK 202
                            GTCPVCR 
Sbjct: 78  -----------------GTCPVCRC 85

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 38.6 bits (90), Expect = 2e-04
 Identities = 22/85 (25%), Positives = 29/85 (34%), Gaps = 39/85 (45%)

Query: 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPN 177
             +CP+C    +   ++V  LP      C H FH  CIV    WL+           H  
Sbjct: 15  GLECPVCKED-YALGESVRQLP------CNHLFHDSCIVP---WLEQ----------H-- 52

Query: 178 TDMRNQKDMLGPIDGNMGTCPVCRK 202
                             +CPVCRK
Sbjct: 53  -----------------DSCPVCRK 60

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 38.4 bits (89), Expect = 2e-04
 Identities = 17/88 (19%), Positives = 25/88 (28%), Gaps = 35/88 (39%)

Query: 120 DCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTD 179
            CP+C+       +N  +   +    C H F S+C+                        
Sbjct: 17  SCPICMDGYSEIVQNGRL---IVSTECGHVFCSQCLRDSLK------------------- 54

Query: 180 MRNQKDMLGPIDGNMGTCPVCRKVFHVK 207
                        N  TCP CRK  + K
Sbjct: 55  -------------NANTCPTCRKKINHK 69

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Length = 55

 Score = 36.4 bits (85), Expect = 7e-04
 Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 6/41 (14%)

Query: 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRW 158
             +C +CL       +    LP      C H FH+EC+  W
Sbjct: 5   GVECAVCLAE-LEDGEEARFLP-----RCGHGFHAECVDMW 39

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 36.9 bits (86), Expect = 8e-04
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 7/41 (17%)

Query: 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRW 158
              C +C+   F   + + VLP      C H FH++C+ +W
Sbjct: 23  QTLCVVCMCD-FESRQLLRVLP------CNHEFHAKCVDKW 56

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	348
2day_A	128	Ring finger protein 25; ligase, metal-binding, UB1	99.86
1ukx_A	137	GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple	99.83
2ebm_A	128	RWD domain-containing protein 1; alpha+beta sandwi	99.82
2yz0_A	138	Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-	99.81
2ebk_A	128	RWD domain-containing protein 3; alpha+beta sandwi	99.76
2dax_A	152	Protein C21ORF6; RWD domain, alpha+beta sandwich f	99.61
2daw_A	154	RWD domain containing protein 2; alpha+beta sandwi	99.56
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	99.23
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.23
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.22
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.22
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.21
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.19
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.19
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.18
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.18
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.16
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.12
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.12
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.11
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	99.1
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.1
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.09
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.08
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	99.08
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.07
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.05
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.03
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.02
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.01
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.01
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	99.0
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	99.0
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	98.98
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.98
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	98.98
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	98.97
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	98.97
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	98.96
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	98.96
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	98.95
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	98.93
1z6u_A	150	NP95-like ring finger protein isoform B; structura	98.92
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	98.9
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	98.88
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	98.85
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.83
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	98.82
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	98.82
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	98.82
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	98.81
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	98.79
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	98.78
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	98.77
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.77
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	98.76
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	98.76
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	98.74
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.7
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.66
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.65
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.64
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	98.58
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.58
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.53
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.5
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.46
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.45
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.43
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.39
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.34
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	98.34
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	98.23
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.14
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.07
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.04
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	98.0
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	97.88
3nw0_A	238	Non-structural maintenance of chromosomes element	97.69
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	94.55
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	94.52
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	94.34
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	94.19
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	94.14
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	93.86
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	93.76
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	93.73
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	93.61
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	93.51
4gpr_A	151	Ubiquitin-conjugating enzyme family protein; ubiqu	93.43
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	93.37
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	93.35
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	93.08
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	93.04
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	93.01
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	92.77
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	92.72
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	92.61
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	92.47
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	92.22
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	92.18
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	92.17
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	92.02
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	91.8
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	91.35
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	91.34
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	91.14
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	90.89
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	90.68
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	90.68
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	90.56
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	89.71
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	89.04
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	88.91
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	88.91
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	88.74
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	88.7
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	88.59
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	88.53
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	88.29
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	88.21
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	87.54
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	87.15
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	87.03
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	86.87
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	86.8
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	86.37
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	84.52
3kpa_A	168	Probable ubiquitin fold modifier conjugating ENZY;	84.1
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	83.77
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	81.79
2z6o_A	172	UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, p	80.96
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	80.88

>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A

Probab=99.86  E-value=2.5e-21  Score=161.67  Aligned_cols=113  Identities=23%  Similarity=0.387  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHHHhhcCCCceeccC----CCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCCCCCCHH
Q 018975            3 EEEVAMELEAVQAVYGDECVVLDS----YPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIESKGLDDQ   78 (348)
Q Consensus         3 ~Ee~~~ElEAL~sIY~dd~~v~~~----~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~~GL~~~   78 (348)
                      .|+|++|||||+|||+|+|.+...    .+..|.|+|.|...++....++.+.|.|.+|++||+.+|.|.+.+.+||++.
T Consensus        10 ~e~~~~EleaL~SIY~de~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~~~~L~~~   89 (128)
T 2day_A           10 DWVLPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNPRGLSDE   89 (128)
T ss_dssp             CCHHHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEEEESSCHH
T ss_pred             HHHHHHHHHHHHHHCCCceEEecCCCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEcCCCCCHH
Confidence            468999999999999999988864    4678999998876554445678999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhhhCC
Q 018975           79 RQKHLISCIQDKAHELTSCLMLVALCEEAVAKLSAMN  115 (348)
Q Consensus        79 ~i~~L~~~L~~~~ee~~G~~ml~elie~~kE~Lte~n  115 (348)
                      ++..|.+.|...++++.|++|+|+|+++++++|.+.|
T Consensus        90 ~~~~L~~~L~~~~~e~~G~~mif~lv~~lqe~l~~~n  126 (128)
T 2day_A           90 QIHTILQVLGHVAKAGLGTAMLYELIEKGKEILSGPS  126 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHHHHHHHhCCCEEhHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999998876

>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3

Probab=99.83  E-value=2.2e-20  Score=157.60  Aligned_cols=114  Identities=26%  Similarity=0.475  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHHHhhcCCCceeccCC-------CCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCCCCC
Q 018975            3 EEEVAMELEAVQAVYGDECVVLDSY-------PPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIESKGL   75 (348)
Q Consensus         3 ~Ee~~~ElEAL~sIY~dd~~v~~~~-------~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~~GL   75 (348)
                      .|+|++|||||+|||+|+|.+++..       +..|.|+|.|...++ ...++.+.|.|.+|++||+.+|.|.+.+++||
T Consensus        12 ~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~-~~~~~~~~L~v~~p~~YP~~~P~i~l~~~~~L   90 (137)
T 1ukx_A           12 SQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLYPQGLAG-EEVYVQVELRVKCPPTYPDVVPEIDLKNAKGL   90 (137)
T ss_dssp             HHHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEECCTTSCS-SSCSCEEEEEECCCTTTTSSCCCCEEEEEESS
T ss_pred             HHHHHHHHHHHHHHCcccceeccCcccCccCCCcEEEEEEecCCcCC-cccceEEEEEEECCCCCCCCCCcEEEecCCCC
Confidence            4789999999999999999887642       578999998743222 33468899999999999999999999889999


Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhhhCCCC
Q 018975           76 DDQRQKHLISCIQDKAHELTSCLMLVALCEEAVAKLSAMNHP  117 (348)
Q Consensus        76 ~~~~i~~L~~~L~~~~ee~~G~~ml~elie~~kE~Lte~n~~  117 (348)
                      +..++..|.+.|...++++.|++|+|+++++++++|.+.+.|
T Consensus        91 ~~~~~~~L~~~L~~~~~e~~G~~mif~lv~~lqe~l~~~~~p  132 (137)
T 1ukx_A           91 SNESVNLLKSHLEELAKKQCGEVMIFELAHHVQSFLSEHNKS  132 (137)
T ss_dssp             SSSHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHCCC
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCEEhHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999999999999999999998755

>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.82  E-value=8.3e-20  Score=152.42  Aligned_cols=109  Identities=24%  Similarity=0.446  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHhhcCCCceeccCCCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCCCCCCHHHHHH
Q 018975            3 EEEVAMELEAVQAVYGDECVVLDSYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIESKGLDDQRQKH   82 (348)
Q Consensus         3 ~Ee~~~ElEAL~sIY~dd~~v~~~~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~~GL~~~~i~~   82 (348)
                      .|+|++|||||+|||+|+|.++...+..|.|+|.+..++.  ..++.+.|.|.+|++||+.+|.|.+...+||+...+..
T Consensus        12 ~e~q~~EleaL~sIy~d~~~~~~~~~~~~~i~i~~~~~~~--~~~~~~~L~v~~p~~YP~~~P~i~l~~~~~l~~~~~~~   89 (128)
T 2ebm_A           12 GEEQRNELEALESIYPDSFTVLSENPPSFTITVTSEAGEN--DETVQTTLKFTYSEKYPDEAPLYEIFSQENLEDNDVSD   89 (128)
T ss_dssp             HHHHHHHHHHHHHHCSSSEEECCSSSCEEEECCBCCCCTT--SCCCBEEEEEECCSSTTTSCCEEEEEEESSCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCceEEccCCCCEEEEEEecCCCCC--cCceeEEEEEEeCCCCCCCCceEEEEcCCCCCHHHHHH
Confidence            4889999999999999999988777789999998765432  34678999999999999999999998888999999999


Q ss_pred             HHHHHHHHHHHhcCCchhhHHHHHHHHHhhh
Q 018975           83 LISCIQDKAHELTSCLMLVALCEEAVAKLSA  113 (348)
Q Consensus        83 L~~~L~~~~ee~~G~~ml~elie~~kE~Lte  113 (348)
                      |.+.|.+.++++.|++|+|++++++++++.+
T Consensus        90 L~~~L~~~~~e~~G~~mif~lv~~lqe~l~e  120 (128)
T 2ebm_A           90 ILKLLALQAEENLGMVMIFTLVTAVQEKLNE  120 (128)
T ss_dssp             HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCEEHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999875

>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}

Probab=99.81  E-value=2.3e-19  Score=151.72  Aligned_cols=109  Identities=17%  Similarity=0.223  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHHhhcCCCceeccC--------CCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCCCC
Q 018975            3 EEEVAMELEAVQAVYGDECVVLDS--------YPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIESKG   74 (348)
Q Consensus         3 ~Ee~~~ElEAL~sIY~dd~~v~~~--------~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~~G   74 (348)
                      .|+|++|||||+|||+|+|.+++.        .+..|.|+|.+..+   ...++.+.|.|.+|++||..+|.|.+.+.+|
T Consensus        12 ~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~f~I~l~~~~~---~~~~~~~~L~~~~p~~YP~~~P~i~l~~~~~   88 (138)
T 2yz0_A           12 YEIQCNELEAIRSIYMDDFTDLTKRKSSWDKQPQIIFEITLRSVDK---EPVESSITLHFAMTPMYPYTAPEIEFKNVQN   88 (138)
T ss_dssp             HHHHHHHHHHHHTTSSSSEECCSTTSSSSCSSCCSCEEEEEECSSC---SSCCCEEEEEEECCSSTTSSCCEEEEECCCS
T ss_pred             HHHHHHHHHHHHHHChhhheecccccccccCCCCcEEEEEEecCCC---CCCceEEEEEEECCCCCCCCCCeEEEecCCC
Confidence            468999999999999999988865        25789999987543   2346899999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhhhC
Q 018975           75 LDDQRQKHLISCIQDKAHELTSCLMLVALCEEAVAKLSAM  114 (348)
Q Consensus        75 L~~~~i~~L~~~L~~~~ee~~G~~ml~elie~~kE~Lte~  114 (348)
                      |++.++..|.+.|...++++.|++|+|++++++++++.+.
T Consensus        89 L~~~~~~~L~~~L~~~~~e~~G~~mif~lv~~lqe~l~~~  128 (138)
T 2yz0_A           89 VMDSQLQMLKSEFKKIHNTSRGQEIIFEITSFTQEKLDEF  128 (138)
T ss_dssp             CCSHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCEEHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998764

>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.76  E-value=3e-18  Score=143.07  Aligned_cols=108  Identities=19%  Similarity=0.172  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHHhhcCC--CceeccCC---CCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCCCCCCH
Q 018975            3 EEEVAMELEAVQAVYGD--ECVVLDSY---PPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIESKGLDD   77 (348)
Q Consensus         3 ~Ee~~~ElEAL~sIY~d--d~~v~~~~---~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~~GL~~   77 (348)
                      .|+|.+|||||+|||++  +|.+....   +..|.|+|.+....+   ..+.+.|.|.+|++||+.+|.|.+. ++||++
T Consensus         9 ~e~q~~EleaL~SIy~d~~e~~~~~~~~~~~~~f~i~l~~~~~~~---~~~~~~L~~~~p~~YP~~~P~i~l~-~~~L~~   84 (128)
T 2ebk_A            9 AEPVQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKAEGFMD---ADIPLELVFHLPVNYPSCLPGISIN-SEQLTR   84 (128)
T ss_dssp             CHHHHHHHHHHHHHHCCTTTCCCSEECSSSCEEEEEEEECCTTTT---CCCEEEEEEEECSSTTSSCCCCCCC-CSSSCH
T ss_pred             HHHHHHHHHHHHHHcCCCCceEEecCCCCCCCeEEEEecCCCCCC---CCeEEEEEEECCCCCCCCCCeEEEE-hhhCCH
Confidence            37899999999999998  88877633   358889988754322   3578999999999999999999987 789999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhhhC
Q 018975           78 QRQKHLISCIQDKAHELTSCLMLVALCEEAVAKLSAM  114 (348)
Q Consensus        78 ~~i~~L~~~L~~~~ee~~G~~ml~elie~~kE~Lte~  114 (348)
                      .++..|.+.|.+.++++.|++|+|++++++++++.+.
T Consensus        85 ~~~~~l~~~L~~~~~e~~G~~mif~lv~~lqe~l~~~  121 (128)
T 2ebk_A           85 AQCVTVKEKLLEQAESLLSEPMVHELVLWIQQNLRHI  121 (128)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTSHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999988764

>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3

Probab=99.61  E-value=7.5e-15  Score=126.04  Aligned_cols=109  Identities=16%  Similarity=0.163  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHhhcC--CCceeccC----------------CC---CeeEEEEecCCCCCCCCcceEEEEEEEcCCCCC
Q 018975            3 EEEVAMELEAVQAVYG--DECVVLDS----------------YP---PHLHLRIKPRTADVSSQQFVEAVIGIRASPKYP   61 (348)
Q Consensus         3 ~Ee~~~ElEAL~sIY~--dd~~v~~~----------------~~---~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP   61 (348)
                      .|+|.+|||||+|||+  |+|.+.+.                .|   ..|.|++.+...+   ...+.+.|.|.+|++||
T Consensus        10 ~e~Q~~EleaL~SIY~~~de~~~~~~~~~~~l~~~~~~~~~~~p~~~~~f~I~l~~~~~~---~~~~~l~L~v~lP~~YP   86 (152)
T 2dax_A           10 AEAQLAELDLLASMFPGENELIVNDQLAVAELKDCIEKKTMEGRSSKVYFTINMNLDVSD---EKMAMFSLACILPFKYP   86 (152)
T ss_dssp             HHHHHHHHHHHHHHCCSSSSEEESCHHHHHHHHHHHHHTCCCCCCSCEEEEEEEEEECST---TCEEEEEEEEEECSSTT
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEcCchhHHHHHHHhhcccccCCCCceEEEEEEecCCCC---ccCceEEEEEECCCCCC
Confidence            4789999999999999  88887653                12   2777877654322   24678999999999999


Q ss_pred             CCCCcccccCCCCCCHHHHHHHHHHHHHHHH-HhcCCchhhHHHHHHHHHhhhCC
Q 018975           62 EHPPRIDLIESKGLDDQRQKHLISCIQDKAH-ELTSCLMLVALCEEAVAKLSAMN  115 (348)
Q Consensus        62 ~~~P~i~i~~~~GL~~~~i~~L~~~L~~~~e-e~~G~~ml~elie~~kE~Lte~n  115 (348)
                      +.+|.|.+... +++..+...|.+.|...++ ++.|++|+|++++++++++...-
T Consensus        87 ~~~P~i~l~~~-~l~~~~~~~L~~~L~~~~~~~~~G~~mif~lv~~lqe~l~~~~  140 (152)
T 2dax_A           87 AVLPEITVRSV-LLSRSQQTQLNTDLTAFLQKHCHGDVCILNATEWVREHASGYV  140 (152)
T ss_dssp             SSCCCCEEECT-TSCHHHHHHHHHHHHHHHHHSSCSSCCSHHHHHHHHHHHHHHC
T ss_pred             CCCCeEEEEcc-cCCHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Confidence            99999998765 5888888888888887775 58899999999999999988753

>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3

Probab=99.56  E-value=2e-14  Score=123.80  Aligned_cols=105  Identities=15%  Similarity=0.155  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHHhhcC--CCceeccC----------------CCC--eeEEEEecCCCCCCCCcceEEEEEEEcCCCCCC
Q 018975            3 EEEVAMELEAVQAVYG--DECVVLDS----------------YPP--HLHLRIKPRTADVSSQQFVEAVIGIRASPKYPE   62 (348)
Q Consensus         3 ~Ee~~~ElEAL~sIY~--dd~~v~~~----------------~~~--~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~   62 (348)
                      .|+|.+|||||+|||+  ++|.+.+.                .|.  .|.|.|.....      ...+.|.|.+|.+||+
T Consensus        16 ~e~Q~eElEaL~SIY~~~de~~v~d~~~~~~l~~~~~~~~~~~p~~~~~~i~l~~~~~------~~~i~L~v~lP~~YP~   89 (154)
T 2daw_A           16 LQLQLLEMEMLFSMFPNQGEVKLEDVNALTNIKRYLEGTREALPPKIEFVITLQIEEP------KVKIDLQVTMPHSYPY   89 (154)
T ss_dssp             HHHHHHHHHHHHHHCCSTTSEEESCGGGTHHHHHHHHTSCCSCCCCEEEEEEEEETTT------TEEEEEEEEECSSTTS
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEeccchHHHHHHhhcccccCCCCceEEEEEEecCCC------CceEEEEEEcCCCCCC
Confidence            4789999999999999  88887641                132  55665554321      2478999999999999


Q ss_pred             CCCcccccCCCCCCHHHHHHHHHHHHHHHHHh-cCCchhhHHHHHHHHHhhhC
Q 018975           63 HPPRIDLIESKGLDDQRQKHLISCIQDKAHEL-TSCLMLVALCEEAVAKLSAM  114 (348)
Q Consensus        63 ~~P~i~i~~~~GL~~~~i~~L~~~L~~~~ee~-~G~~ml~elie~~kE~Lte~  114 (348)
                      .+|.|.+... |++..+...|.+.|...+++. .|++|+|.+++++++++...
T Consensus        90 ~~P~i~l~~~-~l~~~~~~~L~~~L~~~l~~~~lG~~mif~lve~lqe~~~~~  141 (154)
T 2daw_A           90 LALQLFGRSS-ELDRHQQLLLNKGLTSYIGTFDPGELCVCAAIQWLQDNSASY  141 (154)
T ss_dssp             SCCEEEEECS-SSCHHHHHHHHHHHHHHHTTSCTTSCSHHHHHHHHHHTTHHH
T ss_pred             CCCcEEEEeC-CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence            9999998776 899999999999999888776 69999999999999988764

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=4.1e-12  Score=97.37  Aligned_cols=60  Identities=22%  Similarity=0.558  Sum_probs=41.2

Q ss_pred             CCCCCCCccccccccC------CCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCC
Q 018975          116 HPDGDCPLCLYPLFRK------DKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGP  189 (348)
Q Consensus       116 ~~~~~C~ICl~~f~~~------~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (348)
                      ..+..|+||+..|...      +......+. .++.|+|.||..||.+|+.                             
T Consensus        13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~-~~~~C~H~FH~~Ci~~Wl~-----------------------------   62 (81)
T 2ecl_A           13 VECDTCAICRVQVMDACLRCQAENKQEDCVV-VWGECNHSFHNCCMSLWVK-----------------------------   62 (81)
T ss_dssp             CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCE-EEETTSCEEEHHHHHHHTT-----------------------------
T ss_pred             CCCCCCcccChhhhccCcccccccCCCceEE-EeCCCCCccChHHHHHHHH-----------------------------
Confidence            4567899999998641      000001122 2357999999999999974                             


Q ss_pred             CCCCCCCCCCCCcccCccc
Q 018975          190 IDGNMGTCPVCRKVFHVKD  208 (348)
Q Consensus       190 ~~~~~~~CPvCR~~~~~~d  208 (348)
                         .+.+||+||..+...+
T Consensus        63 ---~~~~CP~CR~~~~~~~   78 (81)
T 2ecl_A           63 ---QNNRCPLCQQDWVVQR   78 (81)
T ss_dssp             ---TCCBCTTTCCBCCEEE
T ss_pred             ---hCCCCCCcCCCcchhh
Confidence               3468999999987654

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.23  E-value=5.9e-12  Score=88.65  Aligned_cols=38  Identities=21%  Similarity=0.544  Sum_probs=30.5

Q ss_pred             CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975          117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN  160 (348)
Q Consensus       117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~  160 (348)
                      ....|+||++.|...+..     . ..++|+|.||..||.+|+.
T Consensus         4 ~~~~C~IC~~~~~~~~~~-----~-~~~~CgH~fc~~Ci~~~~~   41 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVV-----A-HVLPCGHLLHRTCYEEMLK   41 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSC-----E-EECTTSCEEETTHHHHHHH
T ss_pred             CCCcCcccChhhcCCCcC-----e-EecCCCCcccHHHHHHHHH
Confidence            457899999999654432     2 3489999999999999986

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.22  E-value=3.7e-12  Score=96.44  Aligned_cols=55  Identities=31%  Similarity=0.773  Sum_probs=43.2

Q ss_pred             CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCC
Q 018975          116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMG  195 (348)
Q Consensus       116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (348)
                      .....|+||++.|...+.      . ..++|+|.||..||.+|+.                                ...
T Consensus        13 ~~~~~C~IC~~~~~~~~~------~-~~~~C~H~fc~~Ci~~~~~--------------------------------~~~   53 (78)
T 2ect_A           13 GSGLECPVCKEDYALGES------V-RQLPCNHLFHDSCIVPWLE--------------------------------QHD   53 (78)
T ss_dssp             SSSCCCTTTTSCCCTTSC------E-EECTTSCEEETTTTHHHHT--------------------------------TTC
T ss_pred             CCCCCCeeCCccccCCCC------E-EEeCCCCeecHHHHHHHHH--------------------------------cCC
Confidence            345799999999976442      2 2479999999999999974                                346


Q ss_pred             CCCCCCcccCccch
Q 018975          196 TCPVCRKVFHVKDL  209 (348)
Q Consensus       196 ~CPvCR~~~~~~d~  209 (348)
                      .||+||..|...++
T Consensus        54 ~CP~Cr~~~~~~~~   67 (78)
T 2ect_A           54 SCPVCRKSLTGQNT   67 (78)
T ss_dssp             SCTTTCCCCCCSCS
T ss_pred             cCcCcCCccCCccc
Confidence            89999999977643

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.22  E-value=7.7e-12  Score=92.38  Aligned_cols=52  Identities=27%  Similarity=0.770  Sum_probs=41.0

Q ss_pred             CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCC
Q 018975          116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMG  195 (348)
Q Consensus       116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (348)
                      .....|+||+..|..++.      . ..++|+|.||..||..|+.                                ...
T Consensus        12 ~~~~~C~IC~~~~~~~~~------~-~~~~C~H~fc~~Ci~~~~~--------------------------------~~~   52 (69)
T 2kiz_A           12 DTEEKCTICLSILEEGED------V-RRLPCMHLFHQVCVDQWLI--------------------------------TNK   52 (69)
T ss_dssp             TCCCSBTTTTBCCCSSSC------E-EECTTSCEEEHHHHHHHHH--------------------------------HCS
T ss_pred             CCCCCCeeCCccccCCCc------E-EEeCCCCHHHHHHHHHHHH--------------------------------cCC
Confidence            345789999999965443      2 2489999999999999986                                234


Q ss_pred             CCCCCCcccCc
Q 018975          196 TCPVCRKVFHV  206 (348)
Q Consensus       196 ~CPvCR~~~~~  206 (348)
                      .||+||..|..
T Consensus        53 ~CP~Cr~~~~~   63 (69)
T 2kiz_A           53 KCPICRVDIEA   63 (69)
T ss_dssp             BCTTTCSBSCS
T ss_pred             CCcCcCccccC
Confidence            69999999865

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.21  E-value=5.1e-12  Score=89.06  Aligned_cols=51  Identities=33%  Similarity=0.728  Sum_probs=39.4

Q ss_pred             CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975          117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT  196 (348)
Q Consensus       117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (348)
                      ....|+||++.|..++..      ..+..|+|.||..||.+|++                                ....
T Consensus         4 ~~~~C~IC~~~~~~~~~~------~~~~~C~H~f~~~Ci~~w~~--------------------------------~~~~   45 (55)
T 1iym_A            4 DGVECAVCLAELEDGEEA------RFLPRCGHGFHAECVDMWLG--------------------------------SHST   45 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCC------EECSSSCCEECTTHHHHTTT--------------------------------TCCS
T ss_pred             CCCcCccCCccccCCCce------EECCCCCCcccHHHHHHHHH--------------------------------cCCc
Confidence            357999999999776542      22224999999999999964                                3467


Q ss_pred             CCCCCcccC
Q 018975          197 CPVCRKVFH  205 (348)
Q Consensus       197 CPvCR~~~~  205 (348)
                      ||+||..+.
T Consensus        46 CP~Cr~~~~   54 (55)
T 1iym_A           46 CPLCRLTVV   54 (55)
T ss_dssp             CSSSCCCSC
T ss_pred             CcCCCCEeE
Confidence            999999874

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.19  E-value=8.2e-12  Score=101.37  Aligned_cols=63  Identities=22%  Similarity=0.545  Sum_probs=42.8

Q ss_pred             CCCCCCccccccccCCCC--------ccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCC
Q 018975          117 PDGDCPLCLYPLFRKDKN--------VEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLG  188 (348)
Q Consensus       117 ~~~~C~ICl~~f~~~~~~--------~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~  188 (348)
                      .+..|+|||+.|......        ....-+.++++|+|.||.+||..|+.....                        
T Consensus        24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~------------------------   79 (114)
T 1v87_A           24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNK------------------------   79 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCC------------------------
T ss_pred             CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccC------------------------
Confidence            457899999999653210        000012335899999999999999851110                        


Q ss_pred             CCCCCCCCCCCCCcccCc
Q 018975          189 PIDGNMGTCPVCRKVFHV  206 (348)
Q Consensus       189 ~~~~~~~~CPvCR~~~~~  206 (348)
                         .....||+||..+..
T Consensus        80 ---~~~~~CP~CR~~~~~   94 (114)
T 1v87_A           80 ---DGSLQCPSCKTIYGE   94 (114)
T ss_dssp             ---SSCCBCTTTCCBSSS
T ss_pred             ---CCCCcCCCCCCccCC
Confidence               135689999999865

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=4.5e-12  Score=95.35  Aligned_cols=51  Identities=25%  Similarity=0.735  Sum_probs=40.8

Q ss_pred             CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975          117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT  196 (348)
Q Consensus       117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (348)
                      ....|+||+..|...+.      + ..++|+|.||..||.+|+.                                ....
T Consensus        22 ~~~~C~IC~~~~~~~~~------~-~~l~C~H~fh~~Ci~~w~~--------------------------------~~~~   62 (75)
T 1x4j_A           22 EQTLCVVCMCDFESRQL------L-RVLPCNHEFHAKCVDKWLK--------------------------------ANRT   62 (75)
T ss_dssp             SCCEETTTTEECCBTCE------E-EEETTTEEEETTHHHHHHH--------------------------------HCSS
T ss_pred             CCCCCeECCcccCCCCe------E-EEECCCCHhHHHHHHHHHH--------------------------------cCCc
Confidence            45789999999976542      2 2479999999999999986                                2357


Q ss_pred             CCCCCcccCc
Q 018975          197 CPVCRKVFHV  206 (348)
Q Consensus       197 CPvCR~~~~~  206 (348)
                      ||+||..+..
T Consensus        63 CP~Cr~~~~~   72 (75)
T 1x4j_A           63 CPICRADSGP   72 (75)
T ss_dssp             CTTTCCCCCC
T ss_pred             CcCcCCcCCC
Confidence            9999999865

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.18  E-value=9.9e-12  Score=93.06  Aligned_cols=52  Identities=25%  Similarity=0.732  Sum_probs=40.9

Q ss_pred             CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCC
Q 018975          116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMG  195 (348)
Q Consensus       116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (348)
                      .....|+||+..|.....      + ..++|+|.||..||.+|++                                ...
T Consensus        13 ~~~~~C~IC~~~~~~~~~------~-~~~~C~H~f~~~Ci~~~~~--------------------------------~~~   53 (74)
T 2ep4_A           13 NLHELCAVCLEDFKPRDE------L-GICPCKHAFHRKCLIKWLE--------------------------------VRK   53 (74)
T ss_dssp             CCSCBCSSSCCBCCSSSC------E-EEETTTEEEEHHHHHHHHH--------------------------------HCS
T ss_pred             CCCCCCcCCCcccCCCCc------E-EEcCCCCEecHHHHHHHHH--------------------------------cCC
Confidence            345789999999976543      2 2369999999999999986                                234


Q ss_pred             CCCCCCcccCc
Q 018975          196 TCPVCRKVFHV  206 (348)
Q Consensus       196 ~CPvCR~~~~~  206 (348)
                      .||+||.+|..
T Consensus        54 ~CP~Cr~~~~~   64 (74)
T 2ep4_A           54 VCPLCNMPVLQ   64 (74)
T ss_dssp             BCTTTCCBCSS
T ss_pred             cCCCcCccccc
Confidence            79999998854

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.18  E-value=5.5e-12  Score=98.73  Aligned_cols=51  Identities=35%  Similarity=0.870  Sum_probs=40.9

Q ss_pred             CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975          117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT  196 (348)
Q Consensus       117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (348)
                      ....|+||+..|..++.      . ..++|+|.||..||..|+.                                ....
T Consensus        39 ~~~~C~IC~~~~~~~~~------~-~~l~C~H~Fh~~Ci~~wl~--------------------------------~~~~   79 (91)
T 2l0b_A           39 QEMCCPICCSEYVKGDV------A-TELPCHHYFHKPCVSIWLQ--------------------------------KSGT   79 (91)
T ss_dssp             SCSEETTTTEECCTTCE------E-EEETTTEEEEHHHHHHHHT--------------------------------TTCB
T ss_pred             CCCCCcccChhhcCCCc------E-EecCCCChHHHHHHHHHHH--------------------------------cCCc
Confidence            45689999999976543      2 2479999999999999974                                3468


Q ss_pred             CCCCCcccCc
Q 018975          197 CPVCRKVFHV  206 (348)
Q Consensus       197 CPvCR~~~~~  206 (348)
                      ||+||..|..
T Consensus        80 CP~Cr~~~~~   89 (91)
T 2l0b_A           80 CPVCRCMFPP   89 (91)
T ss_dssp             CTTTCCBSSC
T ss_pred             CcCcCccCCC
Confidence            9999998854

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.16  E-value=4.9e-12  Score=93.74  Aligned_cols=60  Identities=28%  Similarity=0.540  Sum_probs=43.8

Q ss_pred             CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCC
Q 018975          116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMG  195 (348)
Q Consensus       116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (348)
                      .....|+||++.|....... .  .+..++|+|.||..||.+|+.                                ...
T Consensus         8 ~~~~~C~IC~~~~~~~~~~~-~--~~~~~~CgH~fc~~Ci~~~~~--------------------------------~~~   52 (71)
T 3ng2_A            8 SGTVSCPICMDGYSEIVQNG-R--LIVSTECGHVFCSQCLRDSLK--------------------------------NAN   52 (71)
T ss_dssp             TTCCBCTTTCCBHHHHHTTT-C--CEEECTTSCEEEHHHHHHHHH--------------------------------HCS
T ss_pred             CCCCCCcccChhhhcccccc-C--CeEeCCCCChHhHHHHHHHHH--------------------------------cCC
Confidence            34578999999986521000 0  113489999999999999986                                335


Q ss_pred             CCCCCCcccCccchH
Q 018975          196 TCPVCRKVFHVKDLE  210 (348)
Q Consensus       196 ~CPvCR~~~~~~d~~  210 (348)
                      .||+||..+..+++.
T Consensus        53 ~CP~Cr~~~~~~~~~   67 (71)
T 3ng2_A           53 TCPTCRKKINHKRYH   67 (71)
T ss_dssp             BCTTTCCBCCCCSCC
T ss_pred             CCCCCCCccChhhee
Confidence            899999999876653

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.12  E-value=2.7e-11  Score=89.00  Aligned_cols=56  Identities=29%  Similarity=0.559  Sum_probs=41.4

Q ss_pred             CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCC
Q 018975          116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMG  195 (348)
Q Consensus       116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (348)
                      .....|+||+..|....... .  ...+++|+|.||..||..|+.                                ...
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~-~--~~~~~~CgH~fc~~Ci~~~~~--------------------------------~~~   57 (69)
T 2ea6_A           13 SGTVSCPICMDGYSEIVQNG-R--LIVSTECGHVFCSQCLRDSLK--------------------------------NAN   57 (69)
T ss_dssp             TCCCCCTTTCCCHHHHTTTT-C--CEEECSSSCEEEHHHHHHHHH--------------------------------HCS
T ss_pred             CCCCCCcccCcccccccccc-C--CeEeCCCCChhcHHHHHHHHH--------------------------------cCC
Confidence            34678999999987532111 0  112489999999999999986                                245


Q ss_pred             CCCCCCcccCc
Q 018975          196 TCPVCRKVFHV  206 (348)
Q Consensus       196 ~CPvCR~~~~~  206 (348)
                      .||+||.+|..
T Consensus        58 ~CP~Cr~~~~~   68 (69)
T 2ea6_A           58 TCPTCRKKINH   68 (69)
T ss_dssp             SCTTTCCCCCC
T ss_pred             CCCCCCCccCc
Confidence            79999998854

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.12  E-value=8.6e-12  Score=90.33  Aligned_cols=58  Identities=29%  Similarity=0.552  Sum_probs=42.8

Q ss_pred             CCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCC
Q 018975          118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTC  197 (348)
Q Consensus       118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C  197 (348)
                      ...|+||+..|....... .  ....++|+|.||..||.+|+.                                ....|
T Consensus         3 ~~~C~IC~~~~~~~~~~~-~--~~~~~~CgH~fc~~Ci~~~~~--------------------------------~~~~C   47 (64)
T 2xeu_A            3 MVSCPICMDGYSEIVQNG-R--LIVSTECGHVFCSQCLRDSLK--------------------------------NANTC   47 (64)
T ss_dssp             CCBCTTTCCBHHHHHHTT-C--CEEEETTSCEEEHHHHHHHHH--------------------------------HCSBC
T ss_pred             CCCCCccChhhhCccccC-C--CEEeCCCCCchhHHHHHHHHH--------------------------------cCCCC
Confidence            578999999986521000 0  112489999999999999986                                24589


Q ss_pred             CCCCcccCccchH
Q 018975          198 PVCRKVFHVKDLE  210 (348)
Q Consensus       198 PvCR~~~~~~d~~  210 (348)
                      |+||..+..+++.
T Consensus        48 P~Cr~~~~~~~~~   60 (64)
T 2xeu_A           48 PTCRKKINHKRYH   60 (64)
T ss_dssp             TTTCCBCTTTCEE
T ss_pred             CCCCccCCcccee
Confidence            9999999876653

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.11  E-value=3.4e-11  Score=88.25  Aligned_cols=52  Identities=19%  Similarity=0.459  Sum_probs=41.7

Q ss_pred             CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975          117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT  196 (348)
Q Consensus       117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (348)
                      ....|+||+..|.+        |.+  ++|+|.||..||.+|++                               .....
T Consensus        14 ~~~~C~IC~~~~~~--------p~~--~~CgH~fC~~Ci~~~~~-------------------------------~~~~~   52 (66)
T 2ecy_A           14 DKYKCEKCHLVLCS--------PKQ--TECGHRFCESCMAALLS-------------------------------SSSPK   52 (66)
T ss_dssp             CCEECTTTCCEESS--------CCC--CSSSCCCCHHHHHHHHT-------------------------------TSSCC
T ss_pred             cCCCCCCCChHhcC--------eeE--CCCCCHHHHHHHHHHHH-------------------------------hCcCC
Confidence            45689999999864        333  79999999999999974                               24567


Q ss_pred             CCCCCcccCccch
Q 018975          197 CPVCRKVFHVKDL  209 (348)
Q Consensus       197 CPvCR~~~~~~d~  209 (348)
                      ||+||.++..+++
T Consensus        53 CP~Cr~~~~~~~i   65 (66)
T 2ecy_A           53 CTACQESIVKDKV   65 (66)
T ss_dssp             CTTTCCCCCTTTC
T ss_pred             CCCCCcCCChhhc
Confidence            9999999977653

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=99.10  E-value=4.9e-11  Score=96.19  Aligned_cols=59  Identities=22%  Similarity=0.502  Sum_probs=42.4

Q ss_pred             CCCCCCCccccccccCCC---------CccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCccccccccc
Q 018975          116 HPDGDCPLCLYPLFRKDK---------NVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDM  186 (348)
Q Consensus       116 ~~~~~C~ICl~~f~~~~~---------~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~  186 (348)
                      .....|+||+..|...-.         .+...+.. +++|+|.||.+||.+|+.                          
T Consensus        35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~-~~~C~H~FH~~Ci~~Wl~--------------------------   87 (106)
T 3dpl_R           35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVA-WGVCNHAFHFHCISRWLK--------------------------   87 (106)
T ss_dssp             SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEE-EETTSCEEEHHHHHHHHT--------------------------
T ss_pred             CCCCCCccCChhHhCcCchhhccccccCCccceEe-ecccCcEECHHHHHHHHH--------------------------
Confidence            356899999999975310         11112333 479999999999999974                          


Q ss_pred             CCCCCCCCCCCCCCCcccCcc
Q 018975          187 LGPIDGNMGTCPVCRKVFHVK  207 (348)
Q Consensus       187 ~~~~~~~~~~CPvCR~~~~~~  207 (348)
                            .+.+||+||..+..+
T Consensus        88 ------~~~~CP~Cr~~~~~~  102 (106)
T 3dpl_R           88 ------TRQVCPLDNREWEFQ  102 (106)
T ss_dssp             ------TCSBCSSSCSBCCEE
T ss_pred             ------cCCcCcCCCCcceee
Confidence                  457899999988543

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.10  E-value=4e-11  Score=89.46  Aligned_cols=52  Identities=31%  Similarity=0.636  Sum_probs=41.6

Q ss_pred             CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975          117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT  196 (348)
Q Consensus       117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (348)
                      ....|+||+..|.+        |.+ +++|+|.||..||.+|++                                ....
T Consensus        14 ~~~~C~IC~~~~~~--------p~~-~~~CgH~fC~~Ci~~~~~--------------------------------~~~~   52 (72)
T 2djb_A           14 PYILCSICKGYLID--------ATT-ITECLHTFCKSCIVRHFY--------------------------------YSNR   52 (72)
T ss_dssp             GGGSCTTTSSCCSS--------CEE-CSSSCCEECHHHHHHHHH--------------------------------HCSS
T ss_pred             CCCCCCCCChHHHC--------cCE-ECCCCCHHHHHHHHHHHH--------------------------------cCCc
Confidence            34689999999864        333 359999999999999986                                2467


Q ss_pred             CCCCCcccCccch
Q 018975          197 CPVCRKVFHVKDL  209 (348)
Q Consensus       197 CPvCR~~~~~~d~  209 (348)
                      ||+||.++...++
T Consensus        53 CP~Cr~~~~~~~~   65 (72)
T 2djb_A           53 CPKCNIVVHQTQP   65 (72)
T ss_dssp             CTTTCCCCCSSCS
T ss_pred             CCCcCcccCcccc
Confidence            9999999977654

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.09  E-value=5.4e-11  Score=100.12  Aligned_cols=48  Identities=31%  Similarity=0.720  Sum_probs=39.5

Q ss_pred             CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCC
Q 018975          119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCP  198 (348)
Q Consensus       119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP  198 (348)
                      ..|+||+..|..        |.+  ++|+|.||..||..|+.                                ....||
T Consensus        54 ~~C~iC~~~~~~--------~~~--~~CgH~fc~~Ci~~~~~--------------------------------~~~~CP   91 (138)
T 4ayc_A           54 LQCIICSEYFIE--------AVT--LNCAHSFCSYCINEWMK--------------------------------RKIECP   91 (138)
T ss_dssp             SBCTTTCSBCSS--------EEE--ETTSCEEEHHHHHHHTT--------------------------------TCSBCT
T ss_pred             CCCcccCcccCC--------ceE--CCCCCCccHHHHHHHHH--------------------------------cCCcCC
Confidence            589999999864        433  79999999999999974                                446799


Q ss_pred             CCCcccCccc
Q 018975          199 VCRKVFHVKD  208 (348)
Q Consensus       199 vCR~~~~~~d  208 (348)
                      +||.++....
T Consensus        92 ~Cr~~~~~~~  101 (138)
T 4ayc_A           92 ICRKDIKSKT  101 (138)
T ss_dssp             TTCCBCCCEE
T ss_pred             CCCCcCCCCC
Confidence            9999997654

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.08  E-value=5.9e-11  Score=91.45  Aligned_cols=60  Identities=25%  Similarity=0.575  Sum_probs=45.2

Q ss_pred             CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCC
Q 018975          116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMG  195 (348)
Q Consensus       116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (348)
                      .....|+||+..|...+..    |  ..++|+|.||..||.+|++..                             ....
T Consensus        13 ~~~~~C~IC~~~~~~~~~~----~--~~~~CgH~fC~~Ci~~~~~~~-----------------------------~~~~   57 (88)
T 2ct2_A           13 REVLECPICMESFTEEQLR----P--KLLHCGHTICRQCLEKLLASS-----------------------------INGV   57 (88)
T ss_dssp             CSCCBCTTTCCBCCTTSSC----E--EECSSSCEEEHHHHHHHHHHC-----------------------------SSCB
T ss_pred             cCCCCCccCCccccccCCC----e--EECCCCChhhHHHHHHHHHcC-----------------------------CCCc
Confidence            3457899999999765421    3  247999999999999998611                             1246


Q ss_pred             CCCCCCcccCccchH
Q 018975          196 TCPVCRKVFHVKDLE  210 (348)
Q Consensus       196 ~CPvCR~~~~~~d~~  210 (348)
                      .||+||.++...++.
T Consensus        58 ~CP~Cr~~~~~~~i~   72 (88)
T 2ct2_A           58 RCPFCSKITRITSLT   72 (88)
T ss_dssp             CCTTTCCCBCCSSTT
T ss_pred             CCCCCCCcccchhHH
Confidence            899999999877654

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=99.08  E-value=3.9e-10  Score=107.24  Aligned_cols=126  Identities=14%  Similarity=0.368  Sum_probs=78.2

Q ss_pred             EEEEEEc-CCCCCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhhh---------------
Q 018975           50 AVIGIRA-SPKYPEHPPRIDLIESKGLDDQRQKHLISCIQDKAHELTSCLMLVALCEEAVAKLSA---------------  113 (348)
Q Consensus        50 i~L~i~l-p~~YP~~~P~i~i~~~~GL~~~~i~~L~~~L~~~~ee~~G~~ml~elie~~kE~Lte---------------  113 (348)
                      +.|.|.+ .+..|...|.+.+..+    +..+..|...+......---   -..+.+.....|.-               
T Consensus       230 vSl~IeV~DP~~Pr~lPe~~FlGp----d~~V~~Lr~~l~~Nl~~Wd~---d~si~eNL~~IL~i~~fP~p~~~~~~~~~  302 (381)
T 3k1l_B          230 VYLKLTIADPFACIASMSLKIIGP----TEEVARLRHVLSDGLSNWDS---EMNIHKNLLRMFDLCYFPMPDWSDGPKLD  302 (381)
T ss_dssp             EEEEEEESCTTSTTTTEEEEEESS----HHHHHHHHHHHHHHHHTCCT---TSCHHHHHHHHTTCSSCCCCCGGGCCSCT
T ss_pred             eEEEEEeCCCCCCCcCceeEEECC----hhHhHHHHHHHhhhhhhcCc---cCCHHHHHHHHhCccccCCCccccccccc
Confidence            6777888 8899999999888655    23455555555554332221   11233333333322               


Q ss_pred             -CCCCCCCCCccccccccCCCCccccCcccc--cCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCC
Q 018975          114 -MNHPDGDCPLCLYPLFRKDKNVEVLPFMKL--MSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPI  190 (348)
Q Consensus       114 -~n~~~~~C~ICl~~f~~~~~~~~~~p~~k~--~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (348)
                       ......+|+||+..+.+++.    +|-.++  ..|+|.||..||.+|++.......                     ..
T Consensus       303 e~ee~~~ECaICys~~l~~g~----lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRq---------------------SF  357 (381)
T 3k1l_B          303 EEDNEELRCNICFAYRLDGGE----VPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKT---------------------FL  357 (381)
T ss_dssp             TCCCSCCSCSSSCCSSCTTCC----CCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSC---------------------TT
T ss_pred             ccccCCccCcccceeecCCCC----CccccccCCccCCccchHHHHHHHHhCCCccc---------------------cc
Confidence             11234589999999876332    343333  489999999999999985443211                     11


Q ss_pred             CCCCCCCCCCCcccCcc
Q 018975          191 DGNMGTCPVCRKVFHVK  207 (348)
Q Consensus       191 ~~~~~~CPvCR~~~~~~  207 (348)
                      +...+.||.||.+|..+
T Consensus       358 nvi~G~CPyCr~pIs~s  374 (381)
T 3k1l_B          358 EVSFGQCPFCKAKLSTS  374 (381)
T ss_dssp             TCCEEECTTTCCEEEGG
T ss_pred             cccCCCCCCCCCcCCcc
Confidence            23457899999999764

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.07  E-value=2.6e-11  Score=90.24  Aligned_cols=50  Identities=22%  Similarity=0.448  Sum_probs=40.1

Q ss_pred             CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975          117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT  196 (348)
Q Consensus       117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (348)
                      ....|+||+..|..        |.  .++|+|.||..||.+|+.                                ....
T Consensus        14 ~~~~C~IC~~~~~~--------~~--~~~CgH~fC~~Ci~~~~~--------------------------------~~~~   51 (71)
T 2d8t_A           14 TVPECAICLQTCVH--------PV--SLPCKHVFCYLCVKGASW--------------------------------LGKR   51 (71)
T ss_dssp             SCCBCSSSSSBCSS--------EE--EETTTEEEEHHHHHHCTT--------------------------------CSSB
T ss_pred             CCCCCccCCcccCC--------CE--EccCCCHHHHHHHHHHHH--------------------------------CCCc
Confidence            45789999999853        22  379999999999999963                                3468


Q ss_pred             CCCCCcccCccc
Q 018975          197 CPVCRKVFHVKD  208 (348)
Q Consensus       197 CPvCR~~~~~~d  208 (348)
                      ||+||..|..++
T Consensus        52 CP~Cr~~~~~~~   63 (71)
T 2d8t_A           52 CALCRQEIPEDF   63 (71)
T ss_dssp             CSSSCCBCCHHH
T ss_pred             CcCcCchhCHhh
Confidence            999999997654

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.05  E-value=1.3e-10  Score=84.73  Aligned_cols=56  Identities=21%  Similarity=0.520  Sum_probs=42.3

Q ss_pred             CCCCCcccc-ccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975          118 DGDCPLCLY-PLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT  196 (348)
Q Consensus       118 ~~~C~ICl~-~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (348)
                      ...|+||+. .|.....     +++ .++|+|.||..||.+|+.                               .....
T Consensus         3 ~~~C~IC~~~~~~~~~~-----~~~-~~~CgH~fC~~Ci~~~~~-------------------------------~~~~~   45 (65)
T 1g25_A            3 DQGCPRCKTTKYRNPSL-----KLM-VNVCGHTLCESCVDLLFV-------------------------------RGAGN   45 (65)
T ss_dssp             TTCCSTTTTHHHHCSSC-----CEE-ECTTCCCEEHHHHHHHHH-------------------------------TTSSS
T ss_pred             CCcCCcCCCCccCCCcc-----Cee-cCCCCCHhHHHHHHHHHH-------------------------------cCCCc
Confidence            568999999 6754221     112 379999999999999975                               23467


Q ss_pred             CCCCCcccCccchH
Q 018975          197 CPVCRKVFHVKDLE  210 (348)
Q Consensus       197 CPvCR~~~~~~d~~  210 (348)
                      ||+||+++...++.
T Consensus        46 CP~Cr~~~~~~~~~   59 (65)
T 1g25_A           46 CPECGTPLRKSNFR   59 (65)
T ss_dssp             CTTTCCCCSSCCCE
T ss_pred             CCCCCCccccccce
Confidence            99999999876653

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.03  E-value=9.4e-11  Score=87.27  Aligned_cols=55  Identities=25%  Similarity=0.620  Sum_probs=42.2

Q ss_pred             CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCC
Q 018975          116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMG  195 (348)
Q Consensus       116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (348)
                      .....|+||+..|..        |.+  ++|+|.||..||..|++   ..                          ....
T Consensus        18 ~~~~~C~IC~~~~~~--------~~~--~~CgH~fC~~Ci~~~~~---~~--------------------------~~~~   58 (73)
T 2ysl_A           18 QEEVICPICLDILQK--------PVT--IDCGHNFCLKCITQIGE---TS--------------------------CGFF   58 (73)
T ss_dssp             CCCCBCTTTCSBCSS--------EEE--CTTCCEEEHHHHHHHCS---SS--------------------------CSCC
T ss_pred             ccCCEeccCCcccCC--------eEE--cCCCChhhHHHHHHHHH---cC--------------------------CCCC
Confidence            345789999999863        333  79999999999999963   10                          2456


Q ss_pred             CCCCCCcccCccch
Q 018975          196 TCPVCRKVFHVKDL  209 (348)
Q Consensus       196 ~CPvCR~~~~~~d~  209 (348)
                      .||+||.++..+++
T Consensus        59 ~CP~Cr~~~~~~~~   72 (73)
T 2ysl_A           59 KCPLCKTSVRKNAI   72 (73)
T ss_dssp             CCSSSCCCCCCCCC
T ss_pred             CCCCCCCcCCcccC
Confidence            89999999977654

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.02  E-value=1.1e-10  Score=92.92  Aligned_cols=51  Identities=25%  Similarity=0.600  Sum_probs=40.7

Q ss_pred             CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCC
Q 018975          119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCP  198 (348)
Q Consensus       119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP  198 (348)
                      ..|+||++.|..        |.+ +++|+|.||..||.+||.                               .....||
T Consensus        23 ~~C~IC~~~~~~--------p~~-~~~CgH~FC~~Ci~~~~~-------------------------------~~~~~CP   62 (100)
T 3lrq_A           23 FRCFICMEKLRD--------ARL-CPHCSKLCCFSCIRRWLT-------------------------------EQRAQCP   62 (100)
T ss_dssp             TBCTTTCSBCSS--------EEE-CTTTCCEEEHHHHHHHHH-------------------------------HTCSBCT
T ss_pred             CCCccCCccccC--------ccc-cCCCCChhhHHHHHHHHH-------------------------------HCcCCCC
Confidence            589999999964        333 379999999999999986                               1225799


Q ss_pred             CCCcccCccch
Q 018975          199 VCRKVFHVKDL  209 (348)
Q Consensus       199 vCR~~~~~~d~  209 (348)
                      +||.++...++
T Consensus        63 ~Cr~~~~~~~l   73 (100)
T 3lrq_A           63 HCRAPLQLREL   73 (100)
T ss_dssp             TTCCBCCGGGC
T ss_pred             CCCCcCCHHHh
Confidence            99999976554

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.01  E-value=1.5e-10  Score=85.00  Aligned_cols=49  Identities=31%  Similarity=0.721  Sum_probs=39.1

Q ss_pred             CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975          117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT  196 (348)
Q Consensus       117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (348)
                      ....|+||+..|..        |. ..++|+|.||..||.+|+.                                ....
T Consensus         4 ~~~~C~IC~~~~~~--------~~-~~~~C~H~fc~~Ci~~~~~--------------------------------~~~~   42 (68)
T 1chc_A            4 VAERCPICLEDPSN--------YS-MALPCLHAFCYVCITRWIR--------------------------------QNPT   42 (68)
T ss_dssp             CCCCCSSCCSCCCS--------CE-EETTTTEEESTTHHHHHHH--------------------------------HSCS
T ss_pred             CCCCCeeCCccccC--------Cc-EecCCCCeeHHHHHHHHHh--------------------------------CcCc
Confidence            35789999999853        22 2489999999999999985                                2357


Q ss_pred             CCCCCcccCc
Q 018975          197 CPVCRKVFHV  206 (348)
Q Consensus       197 CPvCR~~~~~  206 (348)
                      ||+||.++..
T Consensus        43 CP~Cr~~~~~   52 (68)
T 1chc_A           43 CPLCKVPVES   52 (68)
T ss_dssp             TTTTCCCCCC
T ss_pred             CcCCChhhHh
Confidence            9999999854

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.01  E-value=1.4e-10  Score=87.69  Aligned_cols=51  Identities=20%  Similarity=0.432  Sum_probs=41.2

Q ss_pred             CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975          117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT  196 (348)
Q Consensus       117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (348)
                      ....|+||+..|.+        |.+  ++|+|.||..||.+|+.                               .....
T Consensus         7 ~~~~C~IC~~~~~~--------Pv~--~~CgH~fc~~Ci~~~~~-------------------------------~~~~~   45 (78)
T 1t1h_A            7 EYFRCPISLELMKD--------PVI--VSTGQTYERSSIQKWLD-------------------------------AGHKT   45 (78)
T ss_dssp             SSSSCTTTSCCCSS--------EEE--ETTTEEEEHHHHHHHHT-------------------------------TTCCB
T ss_pred             ccCCCCCccccccC--------CEE--cCCCCeecHHHHHHHHH-------------------------------HCcCC
Confidence            35789999999864        444  79999999999999985                               23568


Q ss_pred             CCCCCcccCccc
Q 018975          197 CPVCRKVFHVKD  208 (348)
Q Consensus       197 CPvCR~~~~~~d  208 (348)
                      ||+||.++...+
T Consensus        46 CP~C~~~~~~~~   57 (78)
T 1t1h_A           46 CPKSQETLLHAG   57 (78)
T ss_dssp             CTTTCCBCSSCC
T ss_pred             CCCCcCCCChhh
Confidence            999999996643

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.00  E-value=1.8e-10  Score=88.18  Aligned_cols=53  Identities=19%  Similarity=0.578  Sum_probs=40.3

Q ss_pred             CCCCCCccccccccCCCCccccCcccccCCC-----CcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCC
Q 018975          117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCF-----HCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPID  191 (348)
Q Consensus       117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~-----H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (348)
                      ....|.|||..|..++.      +  +++|.     |+||..||.+|+...                             
T Consensus        14 ~~~~C~IC~~~~~~~~~------l--~~pC~C~Gs~h~fH~~Cl~~Wl~~~-----------------------------   56 (80)
T 2d8s_A           14 SQDICRICHCEGDDESP------L--ITPCHCTGSLHFVHQACLQQWIKSS-----------------------------   56 (80)
T ss_dssp             TSCCCSSSCCCCCSSSC------E--ECSSSCCSSSCCEETTHHHHHHHHH-----------------------------
T ss_pred             CCCCCeEcCccccCCCe------e--EeccccCCcCCeeCHHHHHHHHhhC-----------------------------
Confidence            45789999999865432      3  37896     999999999998611                             


Q ss_pred             CCCCCCCCCCcccCcc
Q 018975          192 GNMGTCPVCRKVFHVK  207 (348)
Q Consensus       192 ~~~~~CPvCR~~~~~~  207 (348)
                       ....||+||..+..+
T Consensus        57 -~~~~CplCr~~~~~~   71 (80)
T 2d8s_A           57 -DTRCCELCKYEFIME   71 (80)
T ss_dssp             -CCSBCSSSCCBCCCC
T ss_pred             -CCCCCCCCCCeeecC
Confidence             235899999998553

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=99.00  E-value=5.1e-11  Score=97.66  Aligned_cols=58  Identities=22%  Similarity=0.502  Sum_probs=1.6

Q ss_pred             CCCCCCCccccccccCCC---------CccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCccccccccc
Q 018975          116 HPDGDCPLCLYPLFRKDK---------NVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDM  186 (348)
Q Consensus       116 ~~~~~C~ICl~~f~~~~~---------~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~  186 (348)
                      .....|+||+..|.....         ....++.+ .++|+|.||.+||.+|+.                          
T Consensus        46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~-~~~C~H~FH~~CI~~Wl~--------------------------   98 (117)
T 4a0k_B           46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVA-WGVCNHAFHFHCISRWLK--------------------------   98 (117)
T ss_dssp             CCC-----------------------------------------------------------------------------
T ss_pred             CCCCcCeECChhhcCcChhhhcccccccccccccc-cCCcCceEcHHHHHHHHH--------------------------
Confidence            456899999999965210         01112333 369999999999999985                          


Q ss_pred             CCCCCCCCCCCCCCCcccCc
Q 018975          187 LGPIDGNMGTCPVCRKVFHV  206 (348)
Q Consensus       187 ~~~~~~~~~~CPvCR~~~~~  206 (348)
                            .+.+||+||..+..
T Consensus        99 ------~~~~CP~Cr~~~~~  112 (117)
T 4a0k_B           99 ------TRQVCPLDNREWEF  112 (117)
T ss_dssp             --------------------
T ss_pred             ------cCCcCCCCCCeeee
Confidence                  35689999998754

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.98  E-value=3.1e-10  Score=86.49  Aligned_cols=57  Identities=33%  Similarity=0.714  Sum_probs=42.8

Q ss_pred             CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975          117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT  196 (348)
Q Consensus       117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (348)
                      ....|+||+..|..        |.  .++|+|.||..||..|+.....                          ......
T Consensus        18 ~~~~C~IC~~~~~~--------p~--~~~CgH~fC~~Ci~~~~~~~~~--------------------------~~~~~~   61 (85)
T 2ecw_A           18 EEVTCPICLELLKE--------PV--SADCNHSFCRACITLNYESNRN--------------------------TDGKGN   61 (85)
T ss_dssp             TTTSCTTTCSCCSS--------CE--ECTTSCCBCHHHHHHHHHHSBC--------------------------TTSCBC
T ss_pred             cCCCCcCCChhhCc--------ce--eCCCCCHHHHHHHHHHHHhccC--------------------------CCCCCC
Confidence            45799999999864        33  3799999999999999862110                          023568


Q ss_pred             CCCCCcccCccch
Q 018975          197 CPVCRKVFHVKDL  209 (348)
Q Consensus       197 CPvCR~~~~~~d~  209 (348)
                      ||+||..+..+++
T Consensus        62 CP~Cr~~~~~~~~   74 (85)
T 2ecw_A           62 CPVCRVPYPFGNL   74 (85)
T ss_dssp             CTTTCCCCCTTCC
T ss_pred             CCCCCCcCCHHhC
Confidence            9999999976554

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.98  E-value=3.4e-10  Score=86.21  Aligned_cols=57  Identities=32%  Similarity=0.589  Sum_probs=42.0

Q ss_pred             CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCC
Q 018975          116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMG  195 (348)
Q Consensus       116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (348)
                      .....||||+++|...+..     |. -++|+|.||..||.+||+                               ....
T Consensus         9 ~~~~~CpICle~~~~~d~~-----~~-p~~CGH~fC~~Cl~~~~~-------------------------------~~~~   51 (78)
T 1e4u_A            9 EDPVECPLCMEPLEIDDIN-----FF-PCTCGYQICRFCWHRIRT-------------------------------DENG   51 (78)
T ss_dssp             CCCCBCTTTCCBCCTTTTT-----CC-SSTTSCCCCHHHHHHHTT-------------------------------SSCS
T ss_pred             ccCCcCCccCccCcccccc-----cc-ccCCCCCcCHHHHHHHHh-------------------------------cCCC
Confidence            3457899999998654321     11 135999999999999964                               2346


Q ss_pred             CCCCCCcccCccch
Q 018975          196 TCPVCRKVFHVKDL  209 (348)
Q Consensus       196 ~CPvCR~~~~~~d~  209 (348)
                      .||+||+++...++
T Consensus        52 ~CP~CR~~~~~~~~   65 (78)
T 1e4u_A           52 LCPACRKPYPEDPA   65 (78)
T ss_dssp             BCTTTCCBCSSCSS
T ss_pred             CCCCCCCccCCCch
Confidence            89999999977643

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.98  E-value=2.5e-10  Score=86.96  Aligned_cols=47  Identities=19%  Similarity=0.498  Sum_probs=38.6

Q ss_pred             CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975          117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT  196 (348)
Q Consensus       117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (348)
                      ....|+||+..|..        |.+  ++|+|.||..||.+|+.                                ....
T Consensus        14 ~~~~C~IC~~~~~~--------p~~--~~CgH~fC~~Ci~~~~~--------------------------------~~~~   51 (81)
T 2csy_A           14 IPFRCFICRQAFQN--------PVV--TKCRHYFCESCALEHFR--------------------------------ATPR   51 (81)
T ss_dssp             CCSBCSSSCSBCCS--------EEE--CTTSCEEEHHHHHHHHH--------------------------------HCSB
T ss_pred             CCCCCcCCCchhcC--------eeE--ccCCCHhHHHHHHHHHH--------------------------------CCCc
Confidence            34689999999854        433  89999999999999986                                2457


Q ss_pred             CCCCCcccC
Q 018975          197 CPVCRKVFH  205 (348)
Q Consensus       197 CPvCR~~~~  205 (348)
                      ||+||.++.
T Consensus        52 CP~Cr~~~~   60 (81)
T 2csy_A           52 CYICDQPTG   60 (81)
T ss_dssp             CSSSCCBCC
T ss_pred             CCCcCcccc
Confidence            999999985

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=98.97  E-value=2.5e-10  Score=85.60  Aligned_cols=34  Identities=18%  Similarity=0.357  Sum_probs=28.3

Q ss_pred             CCCCCCccccccccCCCCccccCcccccC-CCCcccHHHHHHHHH
Q 018975          117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMS-CFHCFHSECIVRWWN  160 (348)
Q Consensus       117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~-C~H~FH~~Cl~~w~~  160 (348)
                      ....|+||+..|..        |.+  ++ |+|.||..||.+|+.
T Consensus        14 ~~~~C~IC~~~~~~--------p~~--~~~CgH~fC~~Ci~~~~~   48 (74)
T 2yur_A           14 DELLCLICKDIMTD--------AVV--IPCCGNSYCDECIRTALL   48 (74)
T ss_dssp             GGGSCSSSCCCCTT--------CEE--CSSSCCEECTTHHHHHHH
T ss_pred             CCCCCcCCChHHhC--------CeE--cCCCCCHHHHHHHHHHHH
Confidence            34689999999864        443  77 999999999999986

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=98.97  E-value=4.2e-10  Score=92.74  Aligned_cols=47  Identities=28%  Similarity=0.620  Sum_probs=39.0

Q ss_pred             CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCC
Q 018975          119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCP  198 (348)
Q Consensus       119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP  198 (348)
                      ..|+||+..|..        |.+  ++|+|.||..||.+||.                               .....||
T Consensus        53 ~~C~IC~~~~~~--------p~~--~~CgH~fC~~Ci~~~~~-------------------------------~~~~~CP   91 (124)
T 3fl2_A           53 FQCICCQELVFR--------PIT--TVCQHNVCKDCLDRSFR-------------------------------AQVFSCP   91 (124)
T ss_dssp             TBCTTTSSBCSS--------EEE--CTTSCEEEHHHHHHHHH-------------------------------TTCCBCT
T ss_pred             CCCCcCChHHcC--------cEE--eeCCCcccHHHHHHHHh-------------------------------HCcCCCC
Confidence            589999999864        433  79999999999999986                               2345899


Q ss_pred             CCCcccCc
Q 018975          199 VCRKVFHV  206 (348)
Q Consensus       199 vCR~~~~~  206 (348)
                      +||.++..
T Consensus        92 ~Cr~~~~~   99 (124)
T 3fl2_A           92 ACRYDLGR   99 (124)
T ss_dssp             TTCCBCCT
T ss_pred             CCCccCCC
Confidence            99999965

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.96  E-value=3.8e-10  Score=86.00  Aligned_cols=58  Identities=26%  Similarity=0.639  Sum_probs=43.5

Q ss_pred             CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCC
Q 018975          116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMG  195 (348)
Q Consensus       116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (348)
                      .....|+||+..|..        |.+  ++|+|.||..||..|+......                          ....
T Consensus        17 ~~~~~C~IC~~~~~~--------p~~--~~CgH~fC~~Ci~~~~~~~~~~--------------------------~~~~   60 (85)
T 2ecv_A           17 KEEVTCPICLELLTQ--------PLS--LDCGHSFCQACLTANHKKSMLD--------------------------KGES   60 (85)
T ss_dssp             CCCCCCTTTCSCCSS--------CBC--CSSSCCBCTTHHHHHHHHHHHT--------------------------TSCC
T ss_pred             cCCCCCCCCCcccCC--------cee--CCCCCHHHHHHHHHHHHHhhcC--------------------------CCCC
Confidence            345799999999854        333  7999999999999998732111                          1357


Q ss_pred             CCCCCCcccCccch
Q 018975          196 TCPVCRKVFHVKDL  209 (348)
Q Consensus       196 ~CPvCR~~~~~~d~  209 (348)
                      .||+||..+...++
T Consensus        61 ~CP~Cr~~~~~~~~   74 (85)
T 2ecv_A           61 SCPVCRISYQPENI   74 (85)
T ss_dssp             CCTTTCCSSCSSSC
T ss_pred             cCCCCCCccCHHhc
Confidence            89999999976554

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=98.96  E-value=6.2e-11  Score=89.57  Aligned_cols=59  Identities=27%  Similarity=0.586  Sum_probs=42.9

Q ss_pred             CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975          117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT  196 (348)
Q Consensus       117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (348)
                      ....|+||+..|.+        |.+  ++|+|.||..||.+|+.....                         .......
T Consensus        11 ~~~~C~IC~~~~~~--------p~~--l~CgH~fC~~Ci~~~~~~~~~-------------------------~~~~~~~   55 (79)
T 2egp_A           11 EEVTCPICLELLTE--------PLS--LDCGHSLCRACITVSNKEAVT-------------------------SMGGKSS   55 (79)
T ss_dssp             CCCEETTTTEECSS--------CCC--CSSSCCCCHHHHSCCCCCCSS-------------------------SCCCCCC
T ss_pred             cCCCCcCCCcccCC--------eeE--CCCCCHHHHHHHHHHHHhccc-------------------------CCCCCCc
Confidence            45789999999864        433  799999999999999641000                         0023568


Q ss_pred             CCCCCcccCccchH
Q 018975          197 CPVCRKVFHVKDLE  210 (348)
Q Consensus       197 CPvCR~~~~~~d~~  210 (348)
                      ||+||.++...++.
T Consensus        56 CP~Cr~~~~~~~l~   69 (79)
T 2egp_A           56 CPVCGISYSFEHLQ   69 (79)
T ss_dssp             CSSSCCCCCSSGGG
T ss_pred             CCCCCCcCCHhhCC
Confidence            99999999876553

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.95  E-value=7.2e-11  Score=87.33  Aligned_cols=50  Identities=24%  Similarity=0.718  Sum_probs=40.3

Q ss_pred             CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCC
Q 018975          116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMG  195 (348)
Q Consensus       116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (348)
                      .....|+||+..|..           ..++|+|.||..||.+|+.                                ...
T Consensus        13 ~~~~~C~IC~~~~~~-----------~~~~CgH~fc~~Ci~~~~~--------------------------------~~~   49 (70)
T 2ecn_A           13 TDEEECCICMDGRAD-----------LILPCAHSFCQKCIDKWSD--------------------------------RHR   49 (70)
T ss_dssp             CCCCCCSSSCCSCCS-----------EEETTTEEECHHHHHHSSC--------------------------------CCS
T ss_pred             CCCCCCeeCCcCccC-----------cccCCCCcccHHHHHHHHH--------------------------------CcC
Confidence            345799999999854           1389999999999999963                                456


Q ss_pred             CCCCCCcccCccc
Q 018975          196 TCPVCRKVFHVKD  208 (348)
Q Consensus       196 ~CPvCR~~~~~~d  208 (348)
                      .||+||.++...+
T Consensus        50 ~CP~Cr~~~~~~~   62 (70)
T 2ecn_A           50 NCPICRLQMTGAN   62 (70)
T ss_dssp             SCHHHHHCTTCCC
T ss_pred             cCCCcCCcccCCC
Confidence            8999999997643

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=98.93  E-value=3.7e-10  Score=89.32  Aligned_cols=49  Identities=22%  Similarity=0.532  Sum_probs=39.5

Q ss_pred             CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCC
Q 018975          119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCP  198 (348)
Q Consensus       119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP  198 (348)
                      ..|+||+..|..        |.+ +++|+|.||..||.+|+.                                ....||
T Consensus        23 ~~C~IC~~~~~~--------p~~-~~~CgH~fC~~Ci~~~~~--------------------------------~~~~CP   61 (99)
T 2y43_A           23 LRCGICFEYFNI--------AMI-IPQCSHNYCSLCIRKFLS--------------------------------YKTQCP   61 (99)
T ss_dssp             TBCTTTCSBCSS--------EEE-CTTTCCEEEHHHHHHHHT--------------------------------TCCBCT
T ss_pred             CCcccCChhhCC--------cCE-ECCCCCHhhHHHHHHHHH--------------------------------CCCCCC
Confidence            589999999864        333 249999999999999974                                346899


Q ss_pred             CCCcccCccc
Q 018975          199 VCRKVFHVKD  208 (348)
Q Consensus       199 vCR~~~~~~d  208 (348)
                      +||..+...+
T Consensus        62 ~Cr~~~~~~~   71 (99)
T 2y43_A           62 TCCVTVTEPD   71 (99)
T ss_dssp             TTCCBCCGGG
T ss_pred             CCCCcCChhh
Confidence            9999997644

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=98.92  E-value=2.2e-09  Score=91.73  Aligned_cols=48  Identities=25%  Similarity=0.660  Sum_probs=39.5

Q ss_pred             CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCC
Q 018975          119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCP  198 (348)
Q Consensus       119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP  198 (348)
                      ..|+||+..|..        |.+  ++|+|.||..||.+|+.                               .....||
T Consensus        79 ~~C~IC~~~~~~--------pv~--~~CgH~fC~~Ci~~~~~-------------------------------~~~~~CP  117 (150)
T 1z6u_A           79 FMCVCCQELVYQ--------PVT--TECFHNVCKDCLQRSFK-------------------------------AQVFSCP  117 (150)
T ss_dssp             TBCTTTSSBCSS--------EEE--CTTSCEEEHHHHHHHHH-------------------------------TTCCBCT
T ss_pred             CEeecCChhhcC--------CEE--cCCCCchhHHHHHHHHH-------------------------------hCCCcCC
Confidence            589999999864        444  89999999999999986                               2335799


Q ss_pred             CCCcccCcc
Q 018975          199 VCRKVFHVK  207 (348)
Q Consensus       199 vCR~~~~~~  207 (348)
                      +||.++...
T Consensus       118 ~Cr~~~~~~  126 (150)
T 1z6u_A          118 ACRHDLGQN  126 (150)
T ss_dssp             TTCCBCCTT
T ss_pred             CCCccCCCC
Confidence            999999664

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.90  E-value=1.6e-09  Score=87.12  Aligned_cols=51  Identities=25%  Similarity=0.675  Sum_probs=39.6

Q ss_pred             CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCC
Q 018975          119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCP  198 (348)
Q Consensus       119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP  198 (348)
                      ..|+||+..|..        |.+  ++|+|.||..||..|+.   ..                          .....||
T Consensus        22 ~~C~IC~~~~~~--------p~~--~~CgH~fC~~Ci~~~~~---~~--------------------------~~~~~CP   62 (112)
T 1jm7_A           22 LECPICLELIKE--------PVS--TKCDHIFCKFCMLKLLN---QK--------------------------KGPSQCP   62 (112)
T ss_dssp             TSCSSSCCCCSS--------CCB--CTTSCCCCSHHHHHHHH---SS--------------------------SSSCCCT
T ss_pred             CCCcccChhhcC--------eEE--CCCCCHHHHHHHHHHHH---hC--------------------------CCCCCCc
Confidence            589999998853        333  79999999999999986   10                          1235899


Q ss_pred             CCCcccCccc
Q 018975          199 VCRKVFHVKD  208 (348)
Q Consensus       199 vCR~~~~~~d  208 (348)
                      +||.++...+
T Consensus        63 ~Cr~~~~~~~   72 (112)
T 1jm7_A           63 LCKNDITKRS   72 (112)
T ss_dssp             TTSCCCCTTT
T ss_pred             CCCCcCCHhh
Confidence            9999997653

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.88  E-value=7.9e-10  Score=83.19  Aligned_cols=51  Identities=18%  Similarity=0.493  Sum_probs=40.0

Q ss_pred             CCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCC
Q 018975          118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTC  197 (348)
Q Consensus       118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C  197 (348)
                      ...|+||...|..+.         ++..|+|.||.+||.+||+   .                           ....+|
T Consensus        15 i~~C~IC~~~i~~g~---------~C~~C~h~fH~~Ci~kWl~---~---------------------------~~~~~C   55 (74)
T 2ct0_A           15 VKICNICHSLLIQGQ---------SCETCGIRMHLPCVAKYFQ---S---------------------------NAEPRC   55 (74)
T ss_dssp             SCBCSSSCCBCSSSE---------ECSSSCCEECHHHHHHHST---T---------------------------CSSCCC
T ss_pred             CCcCcchhhHcccCC---------ccCCCCchhhHHHHHHHHH---h---------------------------cCCCCC
Confidence            478999999997532         3459999999999999975   1                           123689


Q ss_pred             CCCCcccCcc
Q 018975          198 PVCRKVFHVK  207 (348)
Q Consensus       198 PvCR~~~~~~  207 (348)
                      |+||..+..+
T Consensus        56 P~Cr~~w~~~   65 (74)
T 2ct0_A           56 PHCNDYWPHE   65 (74)
T ss_dssp             TTTCSCCCSC
T ss_pred             CCCcCcCCCC
Confidence            9999988653

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=98.85  E-value=1.2e-09  Score=94.38  Aligned_cols=49  Identities=33%  Similarity=0.694  Sum_probs=39.2

Q ss_pred             CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCC
Q 018975          119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCP  198 (348)
Q Consensus       119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP  198 (348)
                      ..|+||+..|..        |.+ +++|+|.||..||..||.                               .....||
T Consensus        55 ~~C~IC~~~~~~--------p~~-~~~CgH~fC~~Ci~~~~~-------------------------------~~~~~CP   94 (165)
T 2ckl_B           55 LMCPICLDMLKN--------TMT-TKECLHRFCADCIITALR-------------------------------SGNKECP   94 (165)
T ss_dssp             HBCTTTSSBCSS--------EEE-ETTTCCEEEHHHHHHHHH-------------------------------TTCCBCT
T ss_pred             CCCcccChHhhC--------cCE-eCCCCChhHHHHHHHHHH-------------------------------hCcCCCC
Confidence            489999999864        333 359999999999999986                               2356799


Q ss_pred             CCCcccCcc
Q 018975          199 VCRKVFHVK  207 (348)
Q Consensus       199 vCR~~~~~~  207 (348)
                      +||.++...
T Consensus        95 ~Cr~~~~~~  103 (165)
T 2ckl_B           95 TCRKKLVSK  103 (165)
T ss_dssp             TTCCBCCSG
T ss_pred             CCCCcCCCc
Confidence            999998543

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.83  E-value=9.2e-10  Score=90.79  Aligned_cols=60  Identities=28%  Similarity=0.540  Sum_probs=43.4

Q ss_pred             CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCC
Q 018975          116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMG  195 (348)
Q Consensus       116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (348)
                      .....|+||++.|.+....+ .  .+..++|+|.||..||.+|+.                                ...
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~-~--~~~~~~CgH~fc~~Ci~~~~~--------------------------------~~~   49 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNG-R--LIVSTECGHVFCSQCLRDSLK--------------------------------NAN   49 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTT-C--CEEEETTCCEEEHHHHHHHHT--------------------------------TCS
T ss_pred             CCCCCCcccChhhhCccccc-c--CeEecCCCChhhHHHHHHHHH--------------------------------hCC
Confidence            34679999999986520000 0  112489999999999999974                                345


Q ss_pred             CCCCCCcccCccchH
Q 018975          196 TCPVCRKVFHVKDLE  210 (348)
Q Consensus       196 ~CPvCR~~~~~~d~~  210 (348)
                      .||+||+.+...++.
T Consensus        50 ~CP~Cr~~~~~~~l~   64 (133)
T 4ap4_A           50 TCPTCRKKINHKRYH   64 (133)
T ss_dssp             BCTTTCCBCTTTCEE
T ss_pred             CCCCCCCcCcccccc
Confidence            899999999776553

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=98.82  E-value=1.3e-09  Score=87.61  Aligned_cols=49  Identities=29%  Similarity=0.656  Sum_probs=39.7

Q ss_pred             CCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCC
Q 018975          118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTC  197 (348)
Q Consensus       118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C  197 (348)
                      ...|+||+..|.+        |.+ +++|+|.||..||..|+.                                ....|
T Consensus        15 ~~~C~IC~~~~~~--------p~~-~~~CgH~fC~~Ci~~~~~--------------------------------~~~~C   53 (108)
T 2ckl_A           15 HLMCVLCGGYFID--------ATT-IIECLHSFCKTCIVRYLE--------------------------------TSKYC   53 (108)
T ss_dssp             GTBCTTTSSBCSS--------EEE-ETTTCCEEEHHHHHHHHT--------------------------------SCSBC
T ss_pred             cCCCccCChHHhC--------cCE-eCCCCChhhHHHHHHHHH--------------------------------hCCcC
Confidence            4689999999864        433 249999999999999974                                34689


Q ss_pred             CCCCcccCcc
Q 018975          198 PVCRKVFHVK  207 (348)
Q Consensus       198 PvCR~~~~~~  207 (348)
                      |+||..+...
T Consensus        54 P~Cr~~~~~~   63 (108)
T 2ckl_A           54 PICDVQVHKT   63 (108)
T ss_dssp             TTTCCBSCSS
T ss_pred             cCCCcccccc
Confidence            9999998754

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=98.82  E-value=1.4e-09  Score=84.59  Aligned_cols=34  Identities=18%  Similarity=0.357  Sum_probs=28.6

Q ss_pred             CCCCCCccccccccCCCCccccCcccccC-CCCcccHHHHHHHHH
Q 018975          117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMS-CFHCFHSECIVRWWN  160 (348)
Q Consensus       117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~-C~H~FH~~Cl~~w~~  160 (348)
                      ....|+||+..|.+        |.+  ++ |+|.||..||..||.
T Consensus        12 ~~~~C~IC~~~~~~--------p~~--~~~CgH~fC~~Ci~~~~~   46 (92)
T 3ztg_A           12 DELLCLICKDIMTD--------AVV--IPCCGNSYCDECIRTALL   46 (92)
T ss_dssp             TTTEETTTTEECSS--------CEE--CTTTCCEECHHHHHHHHH
T ss_pred             cCCCCCCCChhhcC--------ceE--CCCCCCHHHHHHHHHHHH
Confidence            45789999999864        444  68 999999999999985

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=98.82  E-value=1.2e-09  Score=84.30  Aligned_cols=51  Identities=20%  Similarity=0.143  Sum_probs=42.3

Q ss_pred             CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975          117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT  196 (348)
Q Consensus       117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (348)
                      ....||||+..|.+        |.+  ++|+|.|+..||.+||.                                ...+
T Consensus        13 ~~~~CpI~~~~m~d--------PV~--~~cGhtf~r~~I~~~l~--------------------------------~~~~   50 (85)
T 2kr4_A           13 DEFRDPLMDTLMTD--------PVR--LPSGTVMDRSIILRHLL--------------------------------NSPT   50 (85)
T ss_dssp             TTTBCTTTCSBCSS--------EEE--CTTSCEEEHHHHHHHHH--------------------------------HCSB
T ss_pred             hheECcccCchhcC--------CeE--CCCCCEECHHHHHHHHh--------------------------------cCCC
Confidence            35789999999975        655  78999999999999986                                2468


Q ss_pred             CCCCCcccCccch
Q 018975          197 CPVCRKVFHVKDL  209 (348)
Q Consensus       197 CPvCR~~~~~~d~  209 (348)
                      ||+||.++...++
T Consensus        51 cP~~~~~l~~~~l   63 (85)
T 2kr4_A           51 DPFNRQMLTESML   63 (85)
T ss_dssp             CTTTCCBCCGGGC
T ss_pred             CCCCcCCCChHhc
Confidence            9999999976544

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=98.81  E-value=1.9e-09  Score=87.71  Aligned_cols=50  Identities=34%  Similarity=0.569  Sum_probs=40.4

Q ss_pred             CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCC
Q 018975          119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCP  198 (348)
Q Consensus       119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP  198 (348)
                      ..|+||+..|.+        |..  ++|+|.||..||.+|+.                               .....||
T Consensus        24 ~~C~IC~~~~~~--------p~~--~~CgH~fC~~Ci~~~~~-------------------------------~~~~~CP   62 (116)
T 1rmd_A           24 ISCQICEHILAD--------PVE--TSCKHLFCRICILRCLK-------------------------------VMGSYCP   62 (116)
T ss_dssp             TBCTTTCSBCSS--------EEE--CTTSCEEEHHHHHHHHH-------------------------------HTCSBCT
T ss_pred             CCCCCCCcHhcC--------cEE--cCCCCcccHHHHHHHHh-------------------------------HCcCcCC
Confidence            589999999864        433  79999999999999986                               1235799


Q ss_pred             CCCcccCccch
Q 018975          199 VCRKVFHVKDL  209 (348)
Q Consensus       199 vCR~~~~~~d~  209 (348)
                      +||.++...++
T Consensus        63 ~Cr~~~~~~~~   73 (116)
T 1rmd_A           63 SCRYPCFPTDL   73 (116)
T ss_dssp             TTCCBCCGGGC
T ss_pred             CCCCCCCHhhc
Confidence            99999976553

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.79  E-value=3e-09  Score=76.87  Aligned_cols=35  Identities=31%  Similarity=0.666  Sum_probs=29.1

Q ss_pred             CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975          116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN  160 (348)
Q Consensus       116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~  160 (348)
                      .....|+||++.|.+        |.+  ++|+|.||..||.+|++
T Consensus        18 ~~~~~C~IC~~~~~~--------p~~--~~CgH~fC~~Ci~~~~~   52 (63)
T 2ysj_A           18 QEEVICPICLDILQK--------PVT--IDCGHNFCLKCITQIGE   52 (63)
T ss_dssp             CCCCBCTTTCSBCSS--------CEE--CTTSSEECHHHHHHHHH
T ss_pred             ccCCCCCcCCchhCC--------eEE--eCCCCcchHHHHHHHHH
Confidence            345789999999864        433  79999999999999986

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.78  E-value=3.6e-09  Score=74.87  Aligned_cols=35  Identities=37%  Similarity=1.014  Sum_probs=28.6

Q ss_pred             CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975          116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN  160 (348)
Q Consensus       116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~  160 (348)
                      .....|+||++.|.+        |.  .++|+|.||..||.+|+.
T Consensus        13 ~~~~~C~IC~~~~~~--------p~--~~~CgH~fC~~Ci~~~~~   47 (58)
T 2ecj_A           13 QVEASCSVCLEYLKE--------PV--IIECGHNFCKACITRWWE   47 (58)
T ss_dssp             CCCCBCSSSCCBCSS--------CC--CCSSCCCCCHHHHHHHTT
T ss_pred             ccCCCCccCCcccCc--------cE--eCCCCCccCHHHHHHHHH
Confidence            345789999999864        33  379999999999999964

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=98.77  E-value=1.5e-09  Score=86.54  Aligned_cols=51  Identities=20%  Similarity=0.125  Sum_probs=42.2

Q ss_pred             CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975          117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT  196 (348)
Q Consensus       117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (348)
                      ....||||+..|.+        |.+  ++|+|.|+..||.+||.                                ...+
T Consensus        28 ~~~~CpI~~~~m~d--------PV~--~~cGhtf~r~~I~~~l~--------------------------------~~~~   65 (100)
T 2kre_A           28 DEFRDPLMDTLMTD--------PVR--LPSGTIMDRSIILRHLL--------------------------------NSPT   65 (100)
T ss_dssp             TTTBCTTTCSBCSS--------EEE--ETTTEEEEHHHHHHHTT--------------------------------SCSB
T ss_pred             HhhCCcCccCcccC--------CeE--CCCCCEEchHHHHHHHH--------------------------------cCCC
Confidence            35789999999975        655  78999999999999974                                3468


Q ss_pred             CCCCCcccCccch
Q 018975          197 CPVCRKVFHVKDL  209 (348)
Q Consensus       197 CPvCR~~~~~~d~  209 (348)
                      ||+||.++...++
T Consensus        66 cP~~~~~l~~~~L   78 (100)
T 2kre_A           66 DPFNRQTLTESML   78 (100)
T ss_dssp             CSSSCCBCCTTSS
T ss_pred             CCCCCCCCChhhc
Confidence            9999999976544

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.77  E-value=6.8e-10  Score=91.56  Aligned_cols=60  Identities=28%  Similarity=0.553  Sum_probs=43.8

Q ss_pred             CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCC
Q 018975          116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMG  195 (348)
Q Consensus       116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (348)
                      .....|+||+..|........   ....++|+|.||..||.+|+.                                ...
T Consensus        70 ~~~~~C~iC~~~~~~~~~~~~---~~~~~~CgH~fc~~Ci~~~~~--------------------------------~~~  114 (133)
T 4ap4_A           70 SGTVSCPICMDGYSEIVQNGR---LIVSTECGHVFCSQCLRDSLK--------------------------------NAN  114 (133)
T ss_dssp             SSSCBCTTTCCBHHHHHHTTC---CEEEETTSBEEEHHHHHHHHH--------------------------------HCS
T ss_pred             CCCCCCCCCCCccccccccCc---ceEeCCCCChhhHHHHHHHHH--------------------------------cCC
Confidence            345789999998865211110   112479999999999999986                                345


Q ss_pred             CCCCCCcccCccchH
Q 018975          196 TCPVCRKVFHVKDLE  210 (348)
Q Consensus       196 ~CPvCR~~~~~~d~~  210 (348)
                      .||+||..+..+++.
T Consensus       115 ~CP~Cr~~~~~~~~~  129 (133)
T 4ap4_A          115 TCPTCRKKINHKRYH  129 (133)
T ss_dssp             BCTTTCCBCCGGGEE
T ss_pred             CCCCCCCcCChhcce
Confidence            899999999887653

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=98.76  E-value=2.4e-09  Score=87.44  Aligned_cols=51  Identities=25%  Similarity=0.580  Sum_probs=40.4

Q ss_pred             CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975          117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT  196 (348)
Q Consensus       117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (348)
                      ....|+||+..|..        |..  ++|+|.||..||..|+.                               .....
T Consensus        17 ~~~~C~IC~~~~~~--------p~~--~~CgH~fC~~Ci~~~~~-------------------------------~~~~~   55 (118)
T 3hct_A           17 SKYECPICLMALRE--------AVQ--TPCGHRFCKACIIKSIR-------------------------------DAGHK   55 (118)
T ss_dssp             GGGBCTTTCSBCSS--------EEE--CTTSCEEEHHHHHHHHH-------------------------------HHCSB
T ss_pred             CCCCCCcCChhhcC--------eEE--CCcCChhhHHHHHHHHh-------------------------------hCCCC
Confidence            34689999999864        433  79999999999999986                               12237


Q ss_pred             CCCCCcccCccc
Q 018975          197 CPVCRKVFHVKD  208 (348)
Q Consensus       197 CPvCR~~~~~~d  208 (348)
                      ||+||.++...+
T Consensus        56 CP~Cr~~~~~~~   67 (118)
T 3hct_A           56 CPVDNEILLENQ   67 (118)
T ss_dssp             CTTTCCBCCGGG
T ss_pred             CCCCCCCcCHHh
Confidence            999999997654

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=98.76  E-value=2.2e-09  Score=85.21  Aligned_cols=51  Identities=14%  Similarity=0.124  Sum_probs=42.0

Q ss_pred             CCCCCCccccccccCCCCccccCcccccCCC-CcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCC
Q 018975          117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCF-HCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMG  195 (348)
Q Consensus       117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~-H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (348)
                      ....||||+..|.+        |.+  ++|+ |.|+..||.+||.                                ...
T Consensus        21 ~~~~CpI~~~~m~d--------PV~--~~cG~htf~r~cI~~~l~--------------------------------~~~   58 (98)
T 1wgm_A           21 DEFLDPIMSTLMCD--------PVV--LPSSRVTVDRSTIARHLL--------------------------------SDQ   58 (98)
T ss_dssp             TTTBCTTTCSBCSS--------EEE--CTTTCCEEEHHHHHHHTT--------------------------------TSC
T ss_pred             HhcCCcCccccccC--------CeE--CCCCCeEECHHHHHHHHH--------------------------------hCC
Confidence            35789999999975        655  7999 9999999999975                                246


Q ss_pred             CCCCCCcccCccch
Q 018975          196 TCPVCRKVFHVKDL  209 (348)
Q Consensus       196 ~CPvCR~~~~~~d~  209 (348)
                      .||+||.++...++
T Consensus        59 ~cP~~~~~l~~~~L   72 (98)
T 1wgm_A           59 TDPFNRSPLTMDQI   72 (98)
T ss_dssp             BCTTTCSBCCTTTS
T ss_pred             CCCCCCCCCChhhc
Confidence            89999999976543

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=98.74  E-value=1.2e-09  Score=88.81  Aligned_cols=47  Identities=23%  Similarity=0.586  Sum_probs=38.3

Q ss_pred             CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCC
Q 018975          119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCP  198 (348)
Q Consensus       119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP  198 (348)
                      ..|+||+..|..        |.+  ++|+|.||..||.+|+.                               .....||
T Consensus        16 ~~C~iC~~~~~~--------p~~--~~CgH~fC~~Ci~~~~~-------------------------------~~~~~CP   54 (115)
T 3l11_A           16 CQCGICMEILVE--------PVT--LPCNHTLCKPCFQSTVE-------------------------------KASLCCP   54 (115)
T ss_dssp             HBCTTTCSBCSS--------CEE--CTTSCEECHHHHCCCCC-------------------------------TTTSBCT
T ss_pred             CCCccCCcccCc--------eeE--cCCCCHHhHHHHHHHHh-------------------------------HCcCCCC
Confidence            579999999864        443  79999999999999963                               2346899


Q ss_pred             CCCcccCc
Q 018975          199 VCRKVFHV  206 (348)
Q Consensus       199 vCR~~~~~  206 (348)
                      +||..+..
T Consensus        55 ~Cr~~~~~   62 (115)
T 3l11_A           55 FCRRRVSS   62 (115)
T ss_dssp             TTCCBCHH
T ss_pred             CCCcccCc
Confidence            99999965

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.70  E-value=2.1e-09  Score=87.66  Aligned_cols=48  Identities=31%  Similarity=0.619  Sum_probs=38.7

Q ss_pred             CCCCCccccccccCCCCccccCccccc-CCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975          118 DGDCPLCLYPLFRKDKNVEVLPFMKLM-SCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT  196 (348)
Q Consensus       118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~-~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (348)
                      ...|+||+..|..        |.+  + +|+|.||..||.+|+.                                  ..
T Consensus        22 ~~~C~IC~~~~~~--------pv~--~~~CgH~fC~~Ci~~~~~----------------------------------~~   57 (117)
T 1jm7_B           22 LLRCSRCTNILRE--------PVC--LGGCEHIFCSNCVSDCIG----------------------------------TG   57 (117)
T ss_dssp             TTSCSSSCSCCSS--------CBC--CCSSSCCBCTTTGGGGTT----------------------------------TB
T ss_pred             CCCCCCCChHhhC--------ccE--eCCCCCHHHHHHHHHHhc----------------------------------CC
Confidence            3699999999864        444  5 9999999999999952                                  56


Q ss_pred             CCCCCcccCccch
Q 018975          197 CPVCRKVFHVKDL  209 (348)
Q Consensus       197 CPvCR~~~~~~d~  209 (348)
                      ||+||.++...++
T Consensus        58 CP~Cr~~~~~~~~   70 (117)
T 1jm7_B           58 CPVCYTPAWIQDL   70 (117)
T ss_dssp             CSSSCCBCSCSSC
T ss_pred             CcCCCCcCccccc
Confidence            9999999865543

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.66  E-value=9.1e-09  Score=100.20  Aligned_cols=60  Identities=20%  Similarity=0.413  Sum_probs=44.1

Q ss_pred             HHHhhhCCCCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccC
Q 018975          108 VAKLSAMNHPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDML  187 (348)
Q Consensus       108 kE~Lte~n~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~  187 (348)
                      .+...++......|+||+..+..        |  ..++|+|.||..||..|+.                           
T Consensus       322 ~~~~~e~~~~~~~C~ICle~~~~--------p--v~lpCGH~FC~~Ci~~wl~---------------------------  364 (389)
T 2y1n_A          322 YELYCEMGSTFQLCKICAENDKD--------V--KIEPCGHLMCTSCLTSWQE---------------------------  364 (389)
T ss_dssp             HHHHHHTTTSSSBCTTTSSSBCC--------E--EEETTCCEECHHHHHHHHH---------------------------
T ss_pred             HHHHHhhcCCCCCCCccCcCCCC--------e--EEeCCCChhhHHHHHHHHh---------------------------
Confidence            33333444445799999998843        2  2489999999999999975                           


Q ss_pred             CCCCCCCCCCCCCCcccCccc
Q 018975          188 GPIDGNMGTCPVCRKVFHVKD  208 (348)
Q Consensus       188 ~~~~~~~~~CPvCR~~~~~~d  208 (348)
                          .....||+||.++...+
T Consensus       365 ----~~~~~CP~CR~~i~~~~  381 (389)
T 2y1n_A          365 ----SEGQGCPFCRCEIKGTE  381 (389)
T ss_dssp             ----HTCSBCTTTCCBCCEEE
T ss_pred             ----cCCCCCCCCCCccCCce
Confidence                13467999999997653

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.65  E-value=6.1e-09  Score=96.44  Aligned_cols=52  Identities=12%  Similarity=0.004  Sum_probs=41.7

Q ss_pred             CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975          117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT  196 (348)
Q Consensus       117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (348)
                      ....||||+..|.+        |.+  ++|+|.||..||.+||.                               ....+
T Consensus       207 ~~~~c~i~~~~~~d--------Pv~--~~~gh~f~~~~i~~~~~-------------------------------~~~~~  245 (281)
T 2c2l_A          207 DYLCGKISFELMRE--------PCI--TPSGITYDRKDIEEHLQ-------------------------------RVGHF  245 (281)
T ss_dssp             STTBCTTTCSBCSS--------EEE--CSSCCEEETTHHHHHHH-------------------------------HTCSS
T ss_pred             cccCCcCcCCHhcC--------CeE--CCCCCEECHHHHHHHHH-------------------------------HCCCC
Confidence            45789999999975        655  89999999999999986                               12234


Q ss_pred             CCCCCcccCccch
Q 018975          197 CPVCRKVFHVKDL  209 (348)
Q Consensus       197 CPvCR~~~~~~d~  209 (348)
                      ||+||.++...++
T Consensus       246 cP~~~~~~~~~~l  258 (281)
T 2c2l_A          246 NPVTRSPLTQEQL  258 (281)
T ss_dssp             CTTTCCCCCGGGC
T ss_pred             CcCCCCCCchhcC
Confidence            9999999976543

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.64  E-value=6.9e-09  Score=73.56  Aligned_cols=32  Identities=25%  Similarity=0.437  Sum_probs=25.6

Q ss_pred             CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHH
Q 018975          117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRW  158 (348)
Q Consensus       117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w  158 (348)
                      ....|+||+..|..        |.  .++|+|.||..||..|
T Consensus         5 ~~~~C~IC~~~~~~--------p~--~l~CgH~fC~~Ci~~~   36 (56)
T 1bor_A            5 QFLRCQQCQAEAKC--------PK--LLPCLHTLCSGCLEAS   36 (56)
T ss_dssp             CCSSCSSSCSSCBC--------CS--CSTTSCCSBTTTCSSS
T ss_pred             cCCCceEeCCccCC--------eE--EcCCCCcccHHHHccC
Confidence            45789999999864        42  3899999999998653

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=98.58  E-value=5.1e-09  Score=88.49  Aligned_cols=34  Identities=29%  Similarity=0.520  Sum_probs=28.5

Q ss_pred             CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975          117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN  160 (348)
Q Consensus       117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~  160 (348)
                      ....|+||+..|.+        |+.  ++|+|.||..||.+||.
T Consensus        30 ~~~~C~IC~~~~~~--------pv~--~~CgH~FC~~Ci~~~~~   63 (141)
T 3knv_A           30 AKYLCSACRNVLRR--------PFQ--AQCGHRYCSFCLASILS   63 (141)
T ss_dssp             GGGBCTTTCSBCSS--------EEE--CTTSCEEEHHHHHHHGG
T ss_pred             cCcCCCCCChhhcC--------cEE--CCCCCccCHHHHHHHHh
Confidence            34689999999864        433  79999999999999974

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.58  E-value=2.7e-08  Score=87.27  Aligned_cols=52  Identities=12%  Similarity=-0.010  Sum_probs=41.7

Q ss_pred             CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975          117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT  196 (348)
Q Consensus       117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (348)
                      ....||||+..|.+        |++  ++|+|.|+..||.+||.                               ....+
T Consensus       105 ~~f~CPI~~elm~D--------PV~--~~~Ghtfer~~I~~~l~-------------------------------~~~~t  143 (179)
T 2f42_A          105 DYLCGKISFELMRE--------PCI--TPSGITYDRKDIEEHLQ-------------------------------RVGHF  143 (179)
T ss_dssp             GGGBCTTTCSBCSS--------EEE--CTTSCEEEHHHHHHHHH-------------------------------HTCSB
T ss_pred             HhhcccCccccCCC--------CeE--CCCCCEECHHHHHHHHH-------------------------------hCCCC
Confidence            45689999999975        655  79999999999999986                               11126


Q ss_pred             CCCCCcccCccch
Q 018975          197 CPVCRKVFHVKDL  209 (348)
Q Consensus       197 CPvCR~~~~~~d~  209 (348)
                      ||+||.++...++
T Consensus       144 cP~t~~~l~~~~L  156 (179)
T 2f42_A          144 DPVTRSPLTQDQL  156 (179)
T ss_dssp             CTTTCCBCCGGGC
T ss_pred             CCCCcCCCChhhC
Confidence            9999999976554

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.53  E-value=4.7e-08  Score=76.69  Aligned_cols=34  Identities=24%  Similarity=0.468  Sum_probs=28.9

Q ss_pred             CCCCCCccccccccCCCCccccCccccc-CCCCcccHHHHHHHHH
Q 018975          117 PDGDCPLCLYPLFRKDKNVEVLPFMKLM-SCFHCFHSECIVRWWN  160 (348)
Q Consensus       117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~-~C~H~FH~~Cl~~w~~  160 (348)
                      ....||||+..|.+        |++  + .|+|.|+..||.+||.
T Consensus         6 ~~~~CPI~~~~~~d--------PV~--~~~cGh~f~r~cI~~~l~   40 (94)
T 2yu4_A            6 SGFTCPITKEEMKK--------PVK--NKVCGHTYEEDAIVRMIE   40 (94)
T ss_dssp             SCCBCTTTCSBCSS--------EEE--ESSSCCEEEHHHHHHHHH
T ss_pred             cEeECcCcCchhcC--------CEE--cCCCCCeecHHHHHHHHH
Confidence            45789999999974        555  6 4999999999999987

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.50  E-value=4.4e-08  Score=76.67  Aligned_cols=62  Identities=21%  Similarity=0.445  Sum_probs=43.1

Q ss_pred             CCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCC
Q 018975          118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTC  197 (348)
Q Consensus       118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C  197 (348)
                      ..+|+||++.|...+       +..+++|+|.||..||..||...-...                        ......|
T Consensus         5 ~~~C~IC~~~~~~~~-------~~~l~~CgH~FC~~Cl~~~~~~~i~~g------------------------~~~~i~C   53 (94)
T 1wim_A            5 SSGCKLCLGEYPVEQ-------MTTIAQCQCIFCTLCLKQYVELLIKEG------------------------LETAISC   53 (94)
T ss_dssp             BCCCSSSCCCCBGGG-------EEEETTTTEEEEHHHHHHHHHHHHHHC------------------------SCCCEEC
T ss_pred             CcCCcccCccccccc-------ceEcCCCCCcccHHHHHHHHHHHhhcC------------------------CcccccC
Confidence            568999999886432       223347999999999999997321110                        0134689


Q ss_pred             CC--CCcc--cCccchH
Q 018975          198 PV--CRKV--FHVKDLE  210 (348)
Q Consensus       198 Pv--CR~~--~~~~d~~  210 (348)
                      |.  ||..  ++..++.
T Consensus        54 P~~~C~~~~~~~~~~i~   70 (94)
T 1wim_A           54 PDAACPKQGHLQENEIE   70 (94)
T ss_dssp             SCTTCSSCCEECHHHHH
T ss_pred             ccccCCCCCccCHHHHH
Confidence            99  9999  8776554

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.46  E-value=5.2e-08  Score=84.36  Aligned_cols=52  Identities=27%  Similarity=0.595  Sum_probs=41.3

Q ss_pred             CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975          117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT  196 (348)
Q Consensus       117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (348)
                      ....|+||+..|..        |+.  ++|+|.||..||.+|+.                               .....
T Consensus        17 ~~~~C~IC~~~~~~--------pv~--~~CgH~fC~~Ci~~~~~-------------------------------~~~~~   55 (170)
T 3hcs_A           17 SKYECPICLMALRE--------AVQ--TPCGHRFCKACIIKSIR-------------------------------DAGHK   55 (170)
T ss_dssp             GGGBCTTTCSBCSS--------EEE--CTTSCEEEHHHHHHHHH-------------------------------HHCSB
T ss_pred             CCCCCCCCChhhcC--------cEE--CCCCCHHHHHHHHHHHH-------------------------------hCCCC
Confidence            34689999999864        443  79999999999999986                               12247


Q ss_pred             CCCCCcccCccch
Q 018975          197 CPVCRKVFHVKDL  209 (348)
Q Consensus       197 CPvCR~~~~~~d~  209 (348)
                      ||+||.++...++
T Consensus        56 CP~Cr~~~~~~~~   68 (170)
T 3hcs_A           56 CPVDNEILLENQL   68 (170)
T ss_dssp             CTTTCCBCCGGGC
T ss_pred             CCCCccCcchhhh
Confidence            9999999977543

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.45  E-value=4.8e-08  Score=70.94  Aligned_cols=49  Identities=20%  Similarity=0.293  Sum_probs=37.1

Q ss_pred             CCCCCccccccccCCCCccccCcccccCCCCc-ccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975          118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHC-FHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT  196 (348)
Q Consensus       118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~-FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (348)
                      ...|+||++.+.+        +.+..++|+|. |+..|+.+|++                                ....
T Consensus         7 ~~~C~IC~~~~~~--------~~~~~~pCgH~~~C~~C~~~~~~--------------------------------~~~~   46 (63)
T 2vje_B            7 LKPCSLCEKRPRD--------GNIIHGRTGHLVTCFHCARRLKK--------------------------------AGAS   46 (63)
T ss_dssp             GSBCTTTSSSBSC--------EEEEETTEEEEEECHHHHHHHHH--------------------------------TTCB
T ss_pred             CCCCcccCCcCCC--------eEEEecCCCCHhHHHHHHHHHHH--------------------------------hCCc
Confidence            4689999987643        11112499998 99999999975                                2367


Q ss_pred             CCCCCcccCc
Q 018975          197 CPVCRKVFHV  206 (348)
Q Consensus       197 CPvCR~~~~~  206 (348)
                      ||+||.+|..
T Consensus        47 CPiCR~~i~~   56 (63)
T 2vje_B           47 CPICKKEIQL   56 (63)
T ss_dssp             CTTTCCBCCE
T ss_pred             CCCcCchhhc
Confidence            9999999853

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.43  E-value=7.1e-08  Score=70.28  Aligned_cols=49  Identities=18%  Similarity=0.273  Sum_probs=36.8

Q ss_pred             CCCCCccccccccCCCCccccCcccccCCCCc-ccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975          118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHC-FHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT  196 (348)
Q Consensus       118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~-FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (348)
                      ...|+||++.+.+        +....++|+|. |+..|+.+|++                                ....
T Consensus         8 ~~~C~IC~~~~~~--------~~~~~~pCgH~~~C~~C~~~~~~--------------------------------~~~~   47 (64)
T 2vje_A            8 IEPCVICQGRPKN--------GCIVHGKTGHLMACFTCAKKLKK--------------------------------RNKP   47 (64)
T ss_dssp             GSCCTTTSSSCSC--------EEEEETTEEEEEECHHHHHHHHH--------------------------------TTCC
T ss_pred             cCCCCcCCCCCCC--------EEEECCCCCChhhHHHHHHHHHH--------------------------------cCCc
Confidence            4689999998753        11101399999 89999999975                                3357


Q ss_pred             CCCCCcccCc
Q 018975          197 CPVCRKVFHV  206 (348)
Q Consensus       197 CPvCR~~~~~  206 (348)
                      ||+||.+|..
T Consensus        48 CPiCR~~i~~   57 (64)
T 2vje_A           48 CPVCRQPIQM   57 (64)
T ss_dssp             CTTTCCCCCE
T ss_pred             CCCcCcchhc
Confidence            9999999853

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.39  E-value=7.9e-08  Score=71.97  Aligned_cols=30  Identities=17%  Similarity=0.366  Sum_probs=24.6

Q ss_pred             CCCCccccccccCCCCccccCcccccCCCCc-ccHHHHHHH
Q 018975          119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHC-FHSECIVRW  158 (348)
Q Consensus       119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~-FH~~Cl~~w  158 (348)
                      ..|+||++.+.+        |.  .++|+|. ||..|+.+|
T Consensus        25 ~~C~iC~~~~~~--------~~--~~pCgH~~~C~~C~~~~   55 (74)
T 4ic3_A           25 KLCKICMDRNIA--------IV--FVPCGHLVTCKQCAEAV   55 (74)
T ss_dssp             TBCTTTSSSBCC--------EE--EETTCCBCCCHHHHTTC
T ss_pred             CCCCCCCCCCCC--------EE--EcCCCChhHHHHhhhcC
Confidence            589999998754        22  3799999 999998776

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.34  E-value=2.5e-07  Score=69.27  Aligned_cols=29  Identities=17%  Similarity=0.408  Sum_probs=23.1

Q ss_pred             CCCCccccccccCCCCccccCcccccCCCCc-ccHHHHHH
Q 018975          119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHC-FHSECIVR  157 (348)
Q Consensus       119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~-FH~~Cl~~  157 (348)
                      ..|+||+..+.+        |.  +++|+|. ||..|+.+
T Consensus        26 ~~C~IC~~~~~~--------~~--~~pCgH~~~C~~C~~~   55 (75)
T 2ecg_A           26 KLCKICMDRNIA--------IV--FVPCGHLVTCKQCAEA   55 (75)
T ss_dssp             HSCSSSCSSCCC--------BC--CSSSCCCCBCHHHHHH
T ss_pred             CCCCcCCCCCCC--------EE--EecCCCHHHHHHHhhC
Confidence            489999998753        22  3799999 99999853

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=98.34  E-value=1.1e-07  Score=87.55  Aligned_cols=56  Identities=23%  Similarity=0.554  Sum_probs=43.3

Q ss_pred             CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCC
Q 018975          116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMG  195 (348)
Q Consensus       116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (348)
                      .....||||+..|.+        |.+ .+.|+|.|+..||.+||.   .                           ....
T Consensus       179 ~~el~CPIcl~~f~D--------PVt-s~~CGHsFcR~cI~~~~~---~---------------------------~~~~  219 (267)
T 3htk_C          179 KIELTCPITCKPYEA--------PLI-SRKCNHVFDRDGIQNYLQ---G---------------------------YTTR  219 (267)
T ss_dssp             BCCSBCTTTSSBCSS--------EEE-ESSSCCEEEHHHHHHHST---T---------------------------CSCE
T ss_pred             ceeeECcCccCcccC--------Cee-eCCCCCcccHHHHHHHHH---h---------------------------CCCC
Confidence            345689999999965        654 259999999999999974   1                           1345


Q ss_pred             CCCC--CCcccCccchH
Q 018975          196 TCPV--CRKVFHVKDLE  210 (348)
Q Consensus       196 ~CPv--CR~~~~~~d~~  210 (348)
                      .||+  ||+.+...|+.
T Consensus       220 ~CPvtGCr~~l~~~dL~  236 (267)
T 3htk_C          220 DCPQAACSQVVSMRDFV  236 (267)
T ss_dssp             ECSGGGCSCEECGGGEE
T ss_pred             CCCcccccCcCchhhCC
Confidence            7999  99999776543

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=98.23  E-value=1e-06  Score=63.32  Aligned_cols=49  Identities=20%  Similarity=0.494  Sum_probs=35.3

Q ss_pred             CCCCCccccccccCCCCccccCcccccCCC--C---cccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCC
Q 018975          118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCF--H---CFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDG  192 (348)
Q Consensus       118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~--H---~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (348)
                      ...|.||+...  ++      +++  ++|.  |   +||..||.+|++..                              
T Consensus         6 ~~~CrIC~~~~--~~------~l~--~PC~C~gs~~~~H~~Cl~~W~~~~------------------------------   45 (60)
T 1vyx_A            6 VPVCWICNEEL--GN------ERF--RACGCTGELENVHRSCLSTWLTIS------------------------------   45 (60)
T ss_dssp             CCEETTTTEEC--SC------CCC--CSCCCSSGGGSCCHHHHHHHHHHH------------------------------
T ss_pred             CCEeEEeecCC--CC------cee--cCcCCCCchhhhHHHHHHHHHHhC------------------------------
Confidence            46899999862  11      232  5754  5   99999999998722                              


Q ss_pred             CCCCCCCCCcccCc
Q 018975          193 NMGTCPVCRKVFHV  206 (348)
Q Consensus       193 ~~~~CPvCR~~~~~  206 (348)
                      ....||+||..+..
T Consensus        46 ~~~~C~~C~~~~~~   59 (60)
T 1vyx_A           46 RNTACQICGVVYNT   59 (60)
T ss_dssp             TCSBCTTTCCBCCC
T ss_pred             CCCccCCCCCeeec
Confidence            23689999998853

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.14  E-value=7.4e-07  Score=64.30  Aligned_cols=50  Identities=12%  Similarity=0.260  Sum_probs=41.2

Q ss_pred             CCCCccccccccCCCCccccCccccc-CCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCC
Q 018975          119 GDCPLCLYPLFRKDKNVEVLPFMKLM-SCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTC  197 (348)
Q Consensus       119 ~~C~ICl~~f~~~~~~~~~~p~~k~~-~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C  197 (348)
                      ..||||+..+.+        |.+  + .|+|.|...||.+|+.                                ..+.|
T Consensus         4 ~~CpIs~~~m~d--------PV~--~~~sG~~yer~~I~~~l~--------------------------------~~~~c   41 (61)
T 2bay_A            4 MLCAISGKVPRR--------PVL--SPKSRTIFEKSLLEQYVK--------------------------------DTGND   41 (61)
T ss_dssp             CCCTTTCSCCSS--------EEE--ETTTTEEEEHHHHHHHHH--------------------------------HHSBC
T ss_pred             EEecCCCCCCCC--------CEE--eCCCCcEEcHHHHHHHHH--------------------------------hCCCC
Confidence            679999999974        544  5 8999999999999986                                23469


Q ss_pred             CCCCcccCccchH
Q 018975          198 PVCRKVFHVKDLE  210 (348)
Q Consensus       198 PvCR~~~~~~d~~  210 (348)
                      |++++++..+|+.
T Consensus        42 P~t~~~L~~~~Li   54 (61)
T 2bay_A           42 PITNEPLSIEEIV   54 (61)
T ss_dssp             TTTCCBCCGGGCE
T ss_pred             cCCcCCCChhhcE
Confidence            9999999887653

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.07  E-value=9.4e-07  Score=67.03  Aligned_cols=30  Identities=17%  Similarity=0.361  Sum_probs=24.1

Q ss_pred             CCCCccccccccCCCCccccCcccccCCCCc-ccHHHHHHH
Q 018975          119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHC-FHSECIVRW  158 (348)
Q Consensus       119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~-FH~~Cl~~w  158 (348)
                      ..|+||+..+.+        +  .+++|+|. |+..|+.+|
T Consensus        19 ~~C~IC~~~~~~--------~--v~~pCgH~~~C~~C~~~~   49 (79)
T 2yho_A           19 MLCMVCCEEEIN--------S--TFCPCGHTVCCESCAAQL   49 (79)
T ss_dssp             TBCTTTSSSBCC--------E--EEETTCBCCBCHHHHTTC
T ss_pred             CEeEEeCcccCc--------E--EEECCCCHHHHHHHHHhc
Confidence            489999988753        2  24799999 999999766

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.04  E-value=2.3e-06  Score=62.95  Aligned_cols=31  Identities=23%  Similarity=0.544  Sum_probs=24.5

Q ss_pred             CCCCCCccccccccCCCCccccCcccccCCCCc-ccHHHHHH
Q 018975          117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHC-FHSECIVR  157 (348)
Q Consensus       117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~-FH~~Cl~~  157 (348)
                      ....|+||++.+.+          +.+++|+|. |+..|+.+
T Consensus        14 ~~~~C~IC~~~~~~----------~v~~pCgH~~~C~~C~~~   45 (68)
T 2ea5_A           14 NSKDCVVCQNGTVN----------WVLLPCRHTCLCDGCVKY   45 (68)
T ss_dssp             CSSCCSSSSSSCCC----------CEETTTTBCCSCTTHHHH
T ss_pred             CCCCCCCcCcCCCC----------EEEECCCChhhhHHHHhc
Confidence            45789999987643          235899999 99999864

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=98.00  E-value=3.8e-06  Score=65.97  Aligned_cols=47  Identities=21%  Similarity=0.526  Sum_probs=38.5

Q ss_pred             CCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCCC
Q 018975          120 DCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCPV  199 (348)
Q Consensus       120 ~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CPv  199 (348)
                      -|++|-.+|..         ..+..+|+|.|+..|+..|..                               .....||+
T Consensus         3 fC~~C~~Pi~i---------ygRmIPCkHvFCydCa~~~~~-------------------------------~~~k~Cp~   42 (101)
T 3vk6_A            3 FCDKCGLPIKV---------YGRMIPCKHVFCYDCAILHEK-------------------------------KGDKMCPG   42 (101)
T ss_dssp             BCTTTCSBCSE---------EEEEETTCCEEEHHHHHHHHH-------------------------------TTCCBCTT
T ss_pred             ecCccCCCeEE---------EeeeccccccHHHHHHHHHHh-------------------------------ccCCCCcC
Confidence            48999999865         446689999999999999964                               24578999


Q ss_pred             CCcccCc
Q 018975          200 CRKVFHV  206 (348)
Q Consensus       200 CR~~~~~  206 (348)
                      ||.+|..
T Consensus        43 C~~~V~r   49 (101)
T 3vk6_A           43 CSDPVQR   49 (101)
T ss_dssp             TCCBCSE
T ss_pred             cCCeeee
Confidence            9999854

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=97.88  E-value=2.2e-06  Score=82.52  Aligned_cols=31  Identities=19%  Similarity=0.506  Sum_probs=25.3

Q ss_pred             CCCCCccccccccCCCCccccCcccccCCCCc-ccHHHHHHH
Q 018975          118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHC-FHSECIVRW  158 (348)
Q Consensus       118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~-FH~~Cl~~w  158 (348)
                      ...|+||++.+..        |.  .++|+|. ||..|+.+|
T Consensus       295 ~~~C~IC~~~~~~--------~v--~lpCgH~~fC~~C~~~~  326 (345)
T 3t6p_A          295 ERTCKVCMDKEVS--------VV--FIPCGHLVVCQECAPSL  326 (345)
T ss_dssp             TCBCTTTSSSBCC--------EE--EETTCCEEECTTTGGGC
T ss_pred             CCCCCccCCcCCc--------eE--EcCCCChhHhHHHHhcC
Confidence            4689999999864        32  3799999 999999776

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=97.69  E-value=3.2e-05  Score=70.72  Aligned_cols=93  Identities=12%  Similarity=0.270  Sum_probs=58.5

Q ss_pred             CCCCHHHHHHHHHHHHH-HHHHhc-CC-----chhhHHHHHHHHHhhhCCCCCCCCCccccccccCCCCccccCcccccC
Q 018975           73 KGLDDQRQKHLISCIQD-KAHELT-SC-----LMLVALCEEAVAKLSAMNHPDGDCPLCLYPLFRKDKNVEVLPFMKLMS  145 (348)
Q Consensus        73 ~GL~~~~i~~L~~~L~~-~~ee~~-G~-----~ml~elie~~kE~Lte~n~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~  145 (348)
                      ++|+..+.+.+++.+.+ .|-... |.     -.+.++..+..+.+.+   ....|.||..-+..+-         ++..
T Consensus       131 k~l~~~eae~lL~~lv~~gWl~~~~g~~~l~~R~l~El~~~l~~~~~~---~i~~C~iC~~iv~~g~---------~C~~  198 (238)
T 3nw0_A          131 KKMRKKEAEQVLQKFVQNKWLIEKEGEFTLHGRAILEMEQYIRETYPD---AVKICNICHSLLIQGQ---------SCET  198 (238)
T ss_dssp             SCCCHHHHHHHHHHHHHTTSEEEETTEEEECHHHHHHHHHHHHHHCTT---TCCBCTTTCSBCSSCE---------ECSS
T ss_pred             CCCCHHHHHHHHHHHHHhcchhhhCCEEEecCccHHHHHHHHHHhcCC---CCCcCcchhhHHhCCc---------ccCc
Confidence            56777766666664443 222211 21     1234444445544432   3578999999887531         3456


Q ss_pred             CCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCCCCCcccCcc
Q 018975          146 CFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCPVCRKVFHVK  207 (348)
Q Consensus       146 C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CPvCR~~~~~~  207 (348)
                      |.|.||.+|+.+|++   .                           .....||.|+..++..
T Consensus       199 C~~~~H~~C~~~~~~---~---------------------------~~~~~CP~C~~~W~~~  230 (238)
T 3nw0_A          199 CGIRMHLPCVAKYFQ---S---------------------------NAEPRCPHCNDYWPHE  230 (238)
T ss_dssp             SCCEECHHHHHHHTT---T---------------------------CSSCBCTTTCCBCCSC
T ss_pred             cChHHHHHHHHHHHH---h---------------------------CCCCCCCCCCCCCCCC
Confidence            999999999999974   1                           1345899999988664

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A

Probab=94.52  E-value=0.099  Score=43.75  Aligned_cols=69  Identities=17%  Similarity=0.201  Sum_probs=44.8

Q ss_pred             CCHHHHHHHHHHHHhhcCCCceecc--C-CCCeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            1 MAEEEVAMELEAVQAVYGDECVVLD--S-YPPHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         1 m~~Ee~~~ElEAL~sIY~dd~~v~~--~-~~~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      |+.-.+..|+..|+.--+..+.+..  + .-..+.+.|. |...   .=..-.+.+.|.+|++||..||.|.+...
T Consensus         1 ~~~~RL~~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~t---pyegg~f~~~i~fp~~YP~~PP~v~f~t~   73 (149)
T 1fxt_A            1 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGT---PYEGGKFVVDIEVPMEYPFKPPKMQFDTK   73 (149)
T ss_dssp             CCHHHHHHHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSS---TTCSSEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             ChHHHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCC---CcCCcEEEEEEECCCCCCCCCCEEEEeCC
Confidence            6777889999999764434444332  1 2235666665 3211   11123588999999999999999988653

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1

Probab=94.34  E-value=0.13  Score=42.45  Aligned_cols=67  Identities=12%  Similarity=0.082  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHhhcCCCceec--cC--CCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            4 EEVAMELEAVQAVYGDECVVL--DS--YPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         4 Ee~~~ElEAL~sIY~dd~~v~--~~--~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      -.+..|+..|+.=-+..+.+.  ..  .-..+.+.|....+  ..=..-.+.+.|.+|++||..||.|.+...
T Consensus        25 ~RL~kEl~~l~~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~--TpYegG~f~l~i~fp~~YP~~PP~v~F~T~   95 (136)
T 2a7l_A           25 KRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPG--TLYEGEKFQLLFKFSSRYPFDSPQVMFTGE   95 (136)
T ss_dssp             HHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTT--STTTTCEEEEEEEECTTTTTSCCEEEEESS
T ss_pred             HHHHHHHHHHHhCCCCCEEEEEeeCccccceeEEEEECCCC--CccccEEEEEEEECCCCCCCCCCEEEEeCC
Confidence            468889999976444444321  11  12245555553211  111223588999999999999999988664

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=94.19  E-value=0.11  Score=44.45  Aligned_cols=67  Identities=16%  Similarity=0.235  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHhhcCCCceecc--CCCCeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            3 EEEVAMELEAVQAVYGDECVVLD--SYPPHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         3 ~Ee~~~ElEAL~sIY~dd~~v~~--~~~~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      .-.+..|+..|+.--+..+.+..  +....+.+.|. |...   .=..-.+.+.|.||++||..||.|.+...
T Consensus        23 ~~RL~kEl~~l~~~~~~gi~~~~~~~nl~~W~~~I~GP~~T---pYegG~f~l~i~fp~~YP~~PP~V~F~T~   92 (166)
T 2ayv_A           23 LKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDS---PYSGGVFFLNIHFPSDYPFKPPKVNFTTK   92 (166)
T ss_dssp             HHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTS---TTTTCEEEEEEECCTTTTSSCCEEEECSC
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEEcCCCcceeeEEEECCCCC---CcCCCEEEEEEeCCCcCCCCCceeeeccC
Confidence            45688899999875444444432  22345666666 3221   11123588999999999999999988764

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...

Probab=94.14  E-value=0.085  Score=44.21  Aligned_cols=68  Identities=19%  Similarity=0.221  Sum_probs=42.9

Q ss_pred             CHHHHHHHHHHHHhhcCCCceeccCCC--CeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            2 AEEEVAMELEAVQAVYGDECVVLDSYP--PHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         2 ~~Ee~~~ElEAL~sIY~dd~~v~~~~~--~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      +.-.+..|+..|+.--+..+.+.....  ..+.+.|. |...   .=..-.+.+.|.+|++||..||.|.+...
T Consensus         5 ~~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~t---pyegg~f~~~i~fp~~YP~~PP~v~f~t~   75 (150)
T 1z2u_A            5 ALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPES---PYQGGVFFLTIHFPTDYPFKPPKVAFTTR   75 (150)
T ss_dssp             HHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTS---TTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEECCCcceEEEEEEECCCCC---CcCCCEEEEEEECCCCCCCCCcEEEEecC
Confidence            345788899999875444444332112  24455555 3221   11223588999999999999999988654

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F

Probab=93.86  E-value=0.16  Score=42.83  Aligned_cols=67  Identities=12%  Similarity=0.135  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHhhcCCCceeccCCC--CeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            3 EEEVAMELEAVQAVYGDECVVLDSYP--PHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         3 ~Ee~~~ElEAL~sIY~dd~~v~~~~~--~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      .-.+..|+..|+.-=+..+.+.....  ..+.+.|. |..   ..=..-.+.+.|.||++||..||.|.+...
T Consensus         7 ~~RL~kE~~~l~~~~~~~i~~~~~~~~l~~w~~~I~Gp~~---tpyegg~f~~~i~fp~~YP~~PP~v~f~t~   76 (155)
T 1jat_A            7 PKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQ---SPYEDGIFELELYLPDDYPMEAPKVRFLTK   76 (155)
T ss_dssp             CHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTT---STTTTEEEEEEEECCTTTTTSCCEEEECSC
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEECCCchhEEEEEEECCCC---CCccCcEEEEEEEcCCCCCCCCCcceeecc
Confidence            35688899999864344444332112  24445554 321   111234689999999999999999988764

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A

Probab=93.76  E-value=0.19  Score=42.13  Aligned_cols=67  Identities=10%  Similarity=0.072  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHhhcCCCceeccCCC--CeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            4 EEVAMELEAVQAVYGDECVVLDSYP--PHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         4 Ee~~~ElEAL~sIY~dd~~v~~~~~--~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      -.+..|+..|+.--++.+.+.....  ..+.+.|....  +..=..-.+.+.|.+|++||..||.|.+...
T Consensus         7 ~RL~~E~~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~--~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~   75 (152)
T 2aak_A            7 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPD--DTPWDGGTFKLSLQFSEDYPNKPPTVRFVSR   75 (152)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCT--TSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             HHHHHHHHHHHhCCCCCEEEEeCCCCccEEEEEEeCCC--CCCccCCEEEEEEECCCCCCCCCCEEEEecC
Confidence            4688899999865444444332211  23444444211  1111123588999999999999999998753

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A

Probab=93.73  E-value=0.23  Score=41.74  Aligned_cols=68  Identities=22%  Similarity=0.220  Sum_probs=45.4

Q ss_pred             CHHHHHHHHHHHHhhcCCCcee-cc--CCCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            2 AEEEVAMELEAVQAVYGDECVV-LD--SYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         2 ~~Ee~~~ElEAL~sIY~dd~~v-~~--~~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      +.-.+..|+..|+.--+..+.+ ..  +.-..+.+.|.|...   .=..-.+.+.|.+|++||..||.|.+...
T Consensus         5 ~~~RL~kEl~~l~~~~~~~i~~~~~~~~~l~~w~~~I~P~~t---pyegg~f~~~i~fp~~YP~~PP~v~f~t~   75 (155)
T 1wzv_A            5 ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQP---PYHLKAFNLRISFPPEYPFKPPMIKFTTK   75 (155)
T ss_dssp             CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEECCCST---TGGGEEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEecCCCchheEEEEEcCCCC---CCCCCEEEEEEECCCCCCCCCCcceeeCC
Confidence            4557889999998655555554 21  222456666654322   11234689999999999999999998764

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1

Probab=93.61  E-value=0.17  Score=42.70  Aligned_cols=67  Identities=15%  Similarity=0.128  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHhhcCCCceeccC--CCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            4 EEVAMELEAVQAVYGDECVVLDS--YPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         4 Ee~~~ElEAL~sIY~dd~~v~~~--~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      -.+..|+..|+.--++.+.+...  .-..+.+.|....+  ..=..-.+.+.|.||++||..||.|.+...
T Consensus        16 ~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~i~Gp~~--tpyegg~f~~~i~fp~~YP~~PP~v~f~t~   84 (158)
T 1zdn_A           16 RLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEG--TPYAGGLFRMKLLLGKDFPASPPKGYFLTK   84 (158)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTT--STTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             HHHHHHHHHHHhCCCCCEEEEECCCChhheeEEEECCCC--CCccCcEEEEEEEcCCCCCCCCCEEEeccC
Confidence            46788999998654444544322  22355666652211  111123588999999999999999988764

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1

Probab=93.51  E-value=0.19  Score=42.40  Aligned_cols=66  Identities=11%  Similarity=0.198  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHhhcCCCceecc--CCCCeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            4 EEVAMELEAVQAVYGDECVVLD--SYPPHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         4 Ee~~~ElEAL~sIY~dd~~v~~--~~~~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      -.+..|+..|+.--+..+.+..  +.-..+.+.|. |...   .=..-.+.+.|.+|++||..||.|.+...
T Consensus        12 ~RL~kEl~~l~~~~~~~i~~~p~~~~l~~w~~~i~Gp~~t---pyegg~f~~~i~fp~~YP~~PP~v~f~t~   80 (156)
T 2e2c_A           12 KRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDT---VYESLKYKLTLEFPSDYPYKPPVVKFTTP   80 (156)
T ss_dssp             HHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTS---TTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             HHHHHHHHHHHhCCCCCEEEEECCCCccEEEEEEECCCCC---CcCCcEEEEEEECCCCCCCCCCEEEEeCC
Confidence            4688899999864334444432  22235566665 3221   11223588999999999999999998764

>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}

Probab=93.43  E-value=0.14  Score=42.87  Aligned_cols=68  Identities=19%  Similarity=0.212  Sum_probs=44.0

Q ss_pred             CHHHHHHHHHHHHhhcCCCceecc--CCCCeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            2 AEEEVAMELEAVQAVYGDECVVLD--SYPPHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         2 ~~Ee~~~ElEAL~sIY~dd~~v~~--~~~~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      +.-.+..|+..|+.-=+..+.+..  +.-..+.+.|. |...   .=..-.+.+.|.+|++||..||.|.+...
T Consensus         5 a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~w~~~i~Gp~~t---pyegg~f~~~i~fp~~YP~~pP~v~f~t~   75 (151)
T 4gpr_A            5 AMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDS---PYQGGLFFLDVHFPVDYPFKAPRVTFMTK   75 (151)
T ss_dssp             HHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCSSS---TTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEEcCCCceEEEEEEeCCCCC---CcCCCEEEEEEECCCCCCCCcceeEEecC
Confidence            345688899999864444443332  22245666666 3221   11223588999999999999999988764

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A

Probab=93.37  E-value=0.14  Score=43.74  Aligned_cols=67  Identities=18%  Similarity=0.221  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHhhcCCCceecc--CCCCeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            3 EEEVAMELEAVQAVYGDECVVLD--SYPPHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         3 ~Ee~~~ElEAL~sIY~dd~~v~~--~~~~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      .-.+..|+..|+.--+..+.+..  +....+.+.|. |...   .=..-.+.+.|.||++||..||.|.+...
T Consensus        21 ~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~T---pYegg~f~l~i~fp~~YP~~PP~v~F~T~   90 (165)
T 2c4o_A           21 LKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDS---PYQGGVFFLTIHFPTDYPFKPPKVAFTTR   90 (165)
T ss_dssp             HHHHHHHHHHHHSSCCTTEEEEESSSCTTEEEEEEECCTTS---TTTTCEEEEEEECCTTTTSSCCEEEECSC
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEEcCCCcceeEEEEECCCCC---CccCceEEEEEECCCcCCCCCCEEEEecC
Confidence            35688899999764334444332  22345666666 3221   11123588999999999999999988754

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=93.35  E-value=0.22  Score=42.61  Aligned_cols=65  Identities=11%  Similarity=0.127  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHhhcCCCceeccCCC--CeeEEEEe-cC-CCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            4 EEVAMELEAVQAVYGDECVVLDSYP--PHLHLRIK-PR-TADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         4 Ee~~~ElEAL~sIY~dd~~v~~~~~--~~~~i~i~-p~-~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      -.+..|+..|+.--+..+.+.....  ..+.+.|. |. +--    ..-.+.|.|.||++||..||.|.+...
T Consensus         7 ~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~tpY----egG~f~l~i~fp~~YP~~PP~v~F~t~   75 (169)
T 1ayz_A            7 RRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPY----EDGTFRLLLEFDEEYPNKPPHVKFLSE   75 (169)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTT----TTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             HHHHHHHHHHHhCCCCCEEEEecCCccccceEEEECCCCCCc----CCCEEEEEEECcccCCCCCCccccccC
Confidence            4678899999865555554432211  23444444 22 211    223588999999999999999998764

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A

Probab=93.08  E-value=0.23  Score=41.49  Aligned_cols=66  Identities=12%  Similarity=0.237  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHhhcCCCceeccCCC--CeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            4 EEVAMELEAVQAVYGDECVVLDSYP--PHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         4 Ee~~~ElEAL~sIY~dd~~v~~~~~--~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      -.+..|+..|+.-=+..+.+.....  ..+.+.|. |...   .=..-.+.+.|.+|++||..||.|.+...
T Consensus         4 ~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~t---pyegg~f~~~i~fp~~YP~~PP~v~f~t~   72 (149)
T 2r0j_A            4 RRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGT---PYEGGTYKLELFLPEQYPMEPPKVRFLTK   72 (149)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTS---TTTTCEEEEEEECCTTTTTSCCEEEECSC
T ss_pred             HHHHHHHHHHHhCCCCCEEEEECCCcccEEEEEEECCCCC---CcCCCEEEEEEeCCcccCCCCCeeEeccC
Confidence            4678899998764333343332111  23445554 3211   11223588999999999999999998764

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A

Probab=93.04  E-value=0.33  Score=40.95  Aligned_cols=66  Identities=18%  Similarity=0.243  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHh---hcCCCceecc--CCCCeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            4 EEVAMELEAVQA---VYGDECVVLD--SYPPHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         4 Ee~~~ElEAL~s---IY~dd~~v~~--~~~~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      -.+..|+..|+.   .-...+.+..  +.-..+.+.|. |...   .=..-.+.+.|.+|++||..||.|.+...
T Consensus        11 ~RL~kEl~~l~~~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~t---pyegg~f~~~i~fp~~YP~~PP~v~f~t~   82 (159)
T 2bep_A           11 QRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDT---PYEGGRYQLEIKIPETYPFNPPKVRFITK   82 (159)
T ss_dssp             HHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTS---TTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             HHHHHHHHHHHhcCCCCCCCEEEEeCCCchheEEEEEECCCCC---CccCCEEEEEEeCCCcCCCCCCEEEeeCC
Confidence            468889999876   2233343332  22235666665 3211   11123588999999999999999998754

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1

Probab=93.01  E-value=0.25  Score=40.01  Aligned_cols=66  Identities=12%  Similarity=0.070  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHhhcCCCceecc--CCCCeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            4 EEVAMELEAVQAVYGDECVVLD--SYPPHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         4 Ee~~~ElEAL~sIY~dd~~v~~--~~~~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      -.+..|+..|+.-=+..+.+..  +.-..+.+.|. |...   .=..-.+.+.|.+|++||..||.|.+...
T Consensus         9 ~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~GP~~t---pYegg~f~~~i~fp~~YP~~PP~v~f~t~   77 (125)
T 2fo3_A            9 YRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENT---IYANEVYKLKIIFPDDYPLKPPIVYFLQK   77 (125)
T ss_dssp             CHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTS---TTTTCEEEEEEECCTTTTTSCCEEEECSS
T ss_pred             HHHHHHHHHHHhCCCCCEEEEeCcchhhhhheEEeCCCCC---CcCCCEEEEEEEcCCCCCCCCCEEEEeCC
Confidence            4678899998754333343322  22235556665 3211   11223588999999999999999988754

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1

Probab=92.77  E-value=0.28  Score=41.22  Aligned_cols=66  Identities=14%  Similarity=0.155  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHhhcCCCceecc--CCCCeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            4 EEVAMELEAVQAVYGDECVVLD--SYPPHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         4 Ee~~~ElEAL~sIY~dd~~v~~--~~~~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      -.+..|+..|+.-=+..+.+..  +.-..+.+.|. |...   .=..-.+.+.|.||++||..||.|.+...
T Consensus         8 ~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~GP~~t---pyegg~f~~~i~fp~~YP~~PP~v~f~t~   76 (154)
T 2c2v_B            8 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDS---PFEGGTFKLELFLPEEYPMAAPKVRFMTK   76 (154)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTS---TTTTCEEEEEEECCTTTTSSCCEEEECSC
T ss_pred             HHHHHHHHHHHhCCCCCEEEEECCCchheEEEEEECCCCC---CcCCCeEEEEEEcCCCCCCCCCEEEeecC
Confidence            4678899999764444444332  22245666665 3221   11123588999999999999999988754

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}

Probab=92.72  E-value=0.28  Score=40.36  Aligned_cols=66  Identities=15%  Similarity=0.087  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHhhcCCCceecc--CCCCeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            4 EEVAMELEAVQAVYGDECVVLD--SYPPHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         4 Ee~~~ElEAL~sIY~dd~~v~~--~~~~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      -.+..|+..|+.=-+..+.+..  +.-..+.+.|. |...   .=..-.+.+.|.+|++||..||.|.+...
T Consensus        23 ~RL~kEl~~l~~~~~~~~~~~~~~~nl~~W~~~I~GP~~t---pYegg~f~~~i~fp~~YP~~PP~v~f~t~   91 (136)
T 2h2y_A           23 YRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENT---IYANEVYKIKIIFPDNYPLKPPIVYFLQK   91 (136)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTS---TTTTCEEEEEEECCTTTTTSCCEEEECSS
T ss_pred             HHHHHHHHHHHhCCCCCeEEEeccccccccEEEEECCCCC---ceeCCEEEEEEEeCCCCCCCCCEEEEeCC
Confidence            4678899988753333343322  22245666665 3211   11223588999999999999999988754

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=92.61  E-value=0.29  Score=41.83  Aligned_cols=66  Identities=14%  Similarity=0.166  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHhhcCCCceeccC--CCCeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            4 EEVAMELEAVQAVYGDECVVLDS--YPPHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         4 Ee~~~ElEAL~sIY~dd~~v~~~--~~~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      -.+..|+..|+.--+..+.+...  .-..+.+.|. |...   .=..-.+.+.|.||++||..||.|.+...
T Consensus         7 ~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~I~GP~~t---pYegg~f~~~i~fp~~YP~~PP~v~f~t~   75 (169)
T 1yh2_A            7 SRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANT---PYEKGVFKLEVIIPERYPFEPPQIRFLTP   75 (169)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTS---TTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             HHHHHHHHHHHhCCCCCEEEEeCCCchheEEEEEECCCCC---CccCCEEEEEEEeCCCCCCCCcEEEeecC
Confidence            35788999997654444444322  2235555554 2211   11123588999999999999999998764

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A

Probab=92.47  E-value=0.3  Score=42.83  Aligned_cols=67  Identities=16%  Similarity=0.188  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHhhcCCCceecc--CCCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            4 EEVAMELEAVQAVYGDECVVLD--SYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         4 Ee~~~ElEAL~sIY~dd~~v~~--~~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      -.+..|+..|+.--+..+.+..  +.-..+.+.|....+  ..=..-.+.|.|.||++||..||.|.+...
T Consensus        51 ~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~--TpYegG~f~l~i~fp~~YP~~PP~V~F~T~  119 (194)
T 3bzh_A           51 KRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPG--SVYEGGVFFLDITFTPEYPFKPPKVTFRTR  119 (194)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTT--STTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             HHHHHHHHHHHhCCCCCceeecccCccccceEEEeCCCC--CCccCCEEEEEEECCCcCCCCCccccccCC
Confidence            4678899998864333343332  222355555552211  111123588999999999999999998754

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A

Probab=92.22  E-value=0.26  Score=41.81  Aligned_cols=67  Identities=13%  Similarity=0.089  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHhhcCCCceecc--C-CCCeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            3 EEEVAMELEAVQAVYGDECVVLD--S-YPPHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         3 ~Ee~~~ElEAL~sIY~dd~~v~~--~-~~~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      .-.+..|+..|+.--+..+.+..  . .-..+.+.|. |...   .=..-.+.+.|.||++||..||.|.+...
T Consensus         5 ~~RL~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~t---pyegg~f~~~i~fp~~YP~~PP~v~f~t~   75 (164)
T 3h8k_A            5 LKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDT---CFEFGVFPAILSFPLDYPLSPPKMRFTCE   75 (164)
T ss_dssp             HHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTS---TTTTCEEEEEEECCTTTTSSCCEEEECSC
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCC---CCCCCEEEEEEECCCCCCCCCCEEEEcCC
Confidence            34678899988865444444432  1 2235666665 3221   11223578999999999999999998765

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1

Probab=92.18  E-value=0.31  Score=42.13  Aligned_cols=66  Identities=9%  Similarity=0.105  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHhhcCCCceeccCCC--CeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            4 EEVAMELEAVQAVYGDECVVLDSYP--PHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         4 Ee~~~ElEAL~sIY~dd~~v~~~~~--~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      -.+..|+..|+.-=+..+.+.....  ..+.+.|. |...   .=..-.+.|.|.||++||..||.|.+...
T Consensus        33 ~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~T---pYegG~f~l~i~fp~~YP~~PP~V~F~T~  101 (179)
T 1i7k_A           33 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGT---VYEDLRYKLSLEFPSGYPYNAPTVKFLTP  101 (179)
T ss_dssp             HHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTS---TTBTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             HHHHHHHHHHHhCCCCCEEEEEcCCcccccEEEEECCCCC---CcCCCEEEEEEECCCcCCCCCceEEEecC
Confidence            4678899988764333343332111  23444454 2211   11123589999999999999999998765

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1

Probab=92.17  E-value=0.38  Score=41.18  Aligned_cols=66  Identities=11%  Similarity=0.047  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHhhcCCCceecc--CCCCeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            4 EEVAMELEAVQAVYGDECVVLD--SYPPHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         4 Ee~~~ElEAL~sIY~dd~~v~~--~~~~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      -.+..|+..|+.--+..+.+..  +.-..+.+.|. |...   .=..-.+.+.|.||++||..||.|.+...
T Consensus        26 ~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~T---pYegG~f~l~i~fp~~YP~~PP~V~F~T~   94 (169)
T 1yrv_A           26 LLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNS---VWQGLVFQLTIHFTSEYNYAPPVVKFITI   94 (169)
T ss_dssp             HHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTS---TTTTCEEEEEEECCTTBTTBCCEEEESSC
T ss_pred             HHHHHHHHHHHhCCCCCEEEEEcCCccccceeEEECCCCC---CccceEEEEEEECCccCCCCCCcceecCC
Confidence            3578899998765444444432  22245666665 3221   11123588999999999999999988764

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=92.02  E-value=0.3  Score=42.51  Aligned_cols=66  Identities=11%  Similarity=0.053  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHhhcCCCceeccCCC--CeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            4 EEVAMELEAVQAVYGDECVVLDSYP--PHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         4 Ee~~~ElEAL~sIY~dd~~v~~~~~--~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      -.+..|+..|+.--+..+.+.....  ..+.+.|. |...   .=..-.+.+.|.||++||..||.|.+...
T Consensus        17 ~RL~kEl~~l~~~~~~~i~~~p~~~nl~~W~~~I~GP~~T---pYegG~f~l~i~fP~~YP~~PP~v~f~T~   85 (187)
T 2f4w_A           17 QRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMT---PYEGGYYHGKLIFPREFPFKPPSIYMITP   85 (187)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTS---TTTTCEEEEEEECCTTTTSSCCEEEECSC
T ss_pred             HHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCC---CCCCCEEEEEEEcCCCCCCCCCcccccCC
Confidence            4678899999854333343322111  24445554 3221   11223588999999999999999988654

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}

Probab=91.80  E-value=0.28  Score=43.70  Aligned_cols=65  Identities=22%  Similarity=0.190  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHhhcCCCceecc--CCCCeeEEEEe-cC-CCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            4 EEVAMELEAVQAVYGDECVVLD--SYPPHLHLRIK-PR-TADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         4 Ee~~~ElEAL~sIY~dd~~v~~--~~~~~~~i~i~-p~-~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      -.+..|+..|+.--+..+.+..  +.-..+.+.|. |. +-.    ..-.+.|.|.||++||..||.|.+...
T Consensus        26 ~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpY----egG~f~l~i~fP~~YP~~PP~V~F~T~   94 (216)
T 2pwq_A           26 LRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPY----EGGHFTLAITIPNDYPYNPPKIKFVTK   94 (216)
T ss_dssp             HHHHHHHHHHHHSCTTTEEEEECSSCTTEEEEEEECCTTSTT----TTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             HHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCc----cceEEEEEEECCCcCCCCCCcccccCC
Confidence            4678899988764444444332  22235666665 32 211    123588999999999999999987653

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A

Probab=91.35  E-value=0.6  Score=39.95  Aligned_cols=66  Identities=15%  Similarity=0.100  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHhhcCCCceec--c-CCCCeeEEEEe-cC-CCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            3 EEEVAMELEAVQAVYGDECVVL--D-SYPPHLHLRIK-PR-TADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         3 ~Ee~~~ElEAL~sIY~dd~~v~--~-~~~~~~~i~i~-p~-~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      .-.+..|+..|+.--+..+.+.  . +.-..+.+.|. |. +--    ..-.+.+.|.||++||..||.|.+...
T Consensus        19 ~~rL~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpY----egG~f~~~i~fp~~YP~~PP~v~F~T~   89 (172)
T 2awf_A           19 SLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLY----EGGVFKAHLTFPKDYPLRPPKMKFITE   89 (172)
T ss_dssp             HHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTT----TTCEEEEEEECCTTTTSSCCEEEECSC
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCc----CCcEEEEEEECCcccCCCCCcccccCC
Confidence            3467789999987544445443  2 12235555554 32 211    123588999999999999999998765

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A

Probab=91.34  E-value=0.54  Score=40.66  Aligned_cols=66  Identities=15%  Similarity=0.136  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHhhcCCCceec-cC--CCCeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            4 EEVAMELEAVQAVYGDECVVL-DS--YPPHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         4 Ee~~~ElEAL~sIY~dd~~v~-~~--~~~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      -.+..|+..|+.--+..+.+. ..  .-..+.+.|. |...   .=..-.+.+.|.||++||..||.|.+...
T Consensus        10 kRL~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~t---pyegg~f~~~i~fp~~YP~~PP~v~f~t~   79 (183)
T 3rz3_A           10 KALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNT---YYEGGYFKARLKFPIDYPYSPPAFRFLTK   79 (183)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTS---TTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             HHHHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCC---CCCCCeEEEEEECCCCCCCCCCeeEecCC
Confidence            468889999887555555444 21  2235666665 3211   11123578999999999999999988765

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=91.14  E-value=0.42  Score=41.81  Aligned_cols=66  Identities=17%  Similarity=0.214  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHhhcC-------------CCceeccCCC--CeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcc
Q 018975            4 EEVAMELEAVQAVYG-------------DECVVLDSYP--PHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRI   67 (348)
Q Consensus         4 Ee~~~ElEAL~sIY~-------------dd~~v~~~~~--~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i   67 (348)
                      -.+..|+..|+.--+             ..+.+.....  ..+.+.|. |..   ..=..-.+.|.|.||++||..||.|
T Consensus        35 ~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~---TpYegG~f~l~i~fp~~YP~~PP~V  111 (193)
T 2f4z_A           35 ARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLG---TPYEGGHFTLDIVIPPDYPYNPPKM  111 (193)
T ss_dssp             HHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTT---STTTTCEEEEEEECCTTTTTSCCEE
T ss_pred             HHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCC---CCcCCCEEEEEEECCCcCCCCCCeE
Confidence            367788888876322             2333322111  23445554 221   1112235889999999999999999


Q ss_pred             cccCC
Q 018975           68 DLIES   72 (348)
Q Consensus        68 ~i~~~   72 (348)
                      .+...
T Consensus       112 ~F~T~  116 (193)
T 2f4z_A          112 KFVTK  116 (193)
T ss_dssp             EESSC
T ss_pred             EEecC
Confidence            98764

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1

Probab=90.89  E-value=0.38  Score=42.86  Aligned_cols=67  Identities=19%  Similarity=0.231  Sum_probs=42.3

Q ss_pred             CHHHHHHHHHHHHhhcCCCceeccCC--C-CeeEEEEe-cC-CCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            2 AEEEVAMELEAVQAVYGDECVVLDSY--P-PHLHLRIK-PR-TADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         2 ~~Ee~~~ElEAL~sIY~dd~~v~~~~--~-~~~~i~i~-p~-~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      +.-.+..|+..|+.--+..+.+....  . ..+.+.|. |. +-.    ..-.+.+.|.||++||..||.|.+...
T Consensus         3 a~~RL~kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpY----egG~f~l~i~fP~~YP~~PP~V~F~T~   74 (215)
T 1tte_A            3 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPY----EGGKFVVDIEVPMEYPFKPPKMQFDTK   74 (215)
T ss_dssp             THHHHHHHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETT----EEECCEEEEECCSCSSSCCCEEEETTT
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCc----CCCEEEEEEeCCccCCCCCCcccccCC
Confidence            44578889999986544445443221  2 24555554 21 111    123478999999999999999988654

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=90.68  E-value=0.5  Score=40.05  Aligned_cols=67  Identities=13%  Similarity=0.051  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHhhcCCCceecc---CCCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            4 EEVAMELEAVQAVYGDECVVLD---SYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         4 Ee~~~ElEAL~sIY~dd~~v~~---~~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      -.+..|+..|+.-=+..+.+..   +.-..+.+.|....+  ..=..-.+.+.|.||++||..||.|.+...
T Consensus         7 ~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~--tpYegg~f~~~i~fp~~YP~~PP~v~f~t~   76 (165)
T 2ucz_A            7 KRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPD--TPYADGVFNAKLEFPKDYPLSPPKLTFTPS   76 (165)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTT--STTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             HHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCC--CCccCcEEEEEEECCccCCCCCCEEEEeCC
Confidence            4678899999864334444432   122345555542111  111123588999999999999999998764

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1

Probab=90.68  E-value=0.47  Score=40.29  Aligned_cols=67  Identities=10%  Similarity=0.038  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHhhcCCCceeccC-C------CCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            4 EEVAMELEAVQAVYGDECVVLDS-Y------PPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         4 Ee~~~ElEAL~sIY~dd~~v~~~-~------~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      ..+..|+..|+.=-+..+.+... .      -..+.+.|....+  ..=..-.+.|.|.||++||..||.|.+...
T Consensus        13 ~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~--Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~   86 (163)
T 3rcz_B           13 TRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPK--TSWEGGLYKLTMAFPEEYPTRPPKCRFTPP   86 (163)
T ss_dssp             HHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTT--STTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             HHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCC--CCcCCCEEEEEEECCCCCCCCCCEEEEeCC
Confidence            46788999998655544443321 1      1234455542211  111223578999999999999999988754

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A

Probab=90.56  E-value=0.78  Score=40.17  Aligned_cols=68  Identities=21%  Similarity=0.276  Sum_probs=42.5

Q ss_pred             CHHHHHHHHHHHHhh---cCCCceec--cCCCCeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            2 AEEEVAMELEAVQAV---YGDECVVL--DSYPPHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         2 ~~Ee~~~ElEAL~sI---Y~dd~~v~--~~~~~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      +.-.+..|+..|..-   -+..+.+.  .+.-..+.+.|. |...   .=..-.+.+.|.||++||..||.|.+...
T Consensus         6 a~~Rl~kEl~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~t---pyegg~f~~~i~fp~~YP~~pP~v~f~t~   79 (201)
T 3k9o_A            6 AVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDT---PYEGGRYQLEIKIPETYPFNPPKVRFITK   79 (201)
T ss_dssp             THHHHHHHHHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTS---TTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCEEEEECCCCccEEEEEEECCCCC---CCCCCEEEEEEECCCcCCCCCCccccccC
Confidence            356788899888642   22233333  222345666665 3221   11123488999999999999999988764

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}

Probab=89.71  E-value=0.56  Score=39.87  Aligned_cols=68  Identities=13%  Similarity=0.209  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHhhc------------CCCceec--cCCCCeeEEEEecCCCCCCCCc--ceEEEEEEEcCCCCCCCCCc
Q 018975            3 EEEVAMELEAVQAVY------------GDECVVL--DSYPPHLHLRIKPRTADVSSQQ--FVEAVIGIRASPKYPEHPPR   66 (348)
Q Consensus         3 ~Ee~~~ElEAL~sIY------------~dd~~v~--~~~~~~~~i~i~p~~~~~~~~~--~v~i~L~i~lp~~YP~~~P~   66 (348)
                      .-.+..|+..|..--            ...+.+.  .+.-..+.+.|....+  ..=.  .-.+.+.|.||++||..||.
T Consensus        10 ~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~--tpye~~gg~f~~~i~fp~~YP~~pP~   87 (167)
T 4ds2_A           10 NKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPAD--SVYGGAGNTYQLSVLFSDDYPHEPPT   87 (167)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEESSTTEEEEEEECCTT--SGGGTTCCEEEEEEECCTTTTTSCCE
T ss_pred             HHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCCCcccEEEEEEECCCC--CCccCCCCEEEEEEECCCCCCCCCCE
Confidence            356788888887654            2222222  2233456666663211  1112  24588999999999999999


Q ss_pred             ccccCC
Q 018975           67 IDLIES   72 (348)
Q Consensus        67 i~i~~~   72 (348)
                      |.+...
T Consensus        88 v~f~t~   93 (167)
T 4ds2_A           88 VRFVTP   93 (167)
T ss_dssp             EEESSC
T ss_pred             EEEeCC
Confidence            988754

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C

Probab=89.04  E-value=1.1  Score=37.67  Aligned_cols=65  Identities=17%  Similarity=0.073  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHhhc-CCCceecc--CC---CCeeEEEEe-cC-CCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            4 EEVAMELEAVQAVY-GDECVVLD--SY---PPHLHLRIK-PR-TADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         4 Ee~~~ElEAL~sIY-~dd~~v~~--~~---~~~~~i~i~-p~-~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      -.+..|+..|+.-- +..+.+..  ..   -..+.+.|. |. +..    ..-.+.|.|.||++||..||.|.+...
T Consensus        24 ~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpY----egG~f~l~i~fp~~YP~~PP~v~F~t~   96 (156)
T 2q0v_A           24 FRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVF----ENRIYSLTIFCDDNYPDSPPTVKFDTK   96 (156)
T ss_dssp             HHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTT----TTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred             HHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCc----CCcEEEEEEECCCcCCCCCCeEEEEcc
Confidence            36788999988642 22333221  11   235666665 32 211    123588999999999999999988764

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A

Probab=88.91  E-value=0.52  Score=39.82  Aligned_cols=67  Identities=13%  Similarity=0.061  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHhhcCCCceeccC-------CCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            4 EEVAMELEAVQAVYGDECVVLDS-------YPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         4 Ee~~~ElEAL~sIY~dd~~v~~~-------~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      -.+..|+..|+.--+..+.+...       .-..+.+.|....  +..=..-.+.+.|.||++||..||.|.+...
T Consensus        10 ~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~--~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~   83 (161)
T 2grr_A           10 SRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKK--GTPWEGGLFKLRMLFKDDYPSSPPKCKFEPP   83 (161)
T ss_dssp             HHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCT--TSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             HHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCC--CCCccCCEEEEEEEcCcccCCCCCEEEEecC
Confidence            46888999998654544443321       0113444554211  1111223578999999999999999988754

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A

Probab=88.91  E-value=1  Score=38.17  Aligned_cols=66  Identities=15%  Similarity=0.195  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHhhcCCCceec-cC-C-CCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            4 EEVAMELEAVQAVYGDECVVL-DS-Y-PPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         4 Ee~~~ElEAL~sIY~dd~~v~-~~-~-~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      -.+..|+..|+.--++.+.+. .. . -..+.+.|.|...-   =..-.+.+.|.||++||..||.|.+...
T Consensus        17 ~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~igp~~tp---yegg~f~~~i~fp~~YP~~pP~v~f~t~   85 (167)
T 3fn1_B           17 KLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGY---YQGGKFQFETEVPDAYNMVPPKVKCLTK   85 (167)
T ss_dssp             HHHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEECCSSST---TTTCCEEEEEECCTTBTTBCCEEEECSC
T ss_pred             HHHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEECCCCCc---cCCCEEEEEEECCCCCCCCCCeeEecCC
Confidence            357889999987555555543 11 1 23455556543221   1123478999999999999999988764

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C

Probab=88.74  E-value=0.39  Score=40.29  Aligned_cols=66  Identities=18%  Similarity=0.185  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHhhcCCCceecc---CCCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            4 EEVAMELEAVQAVYGDECVVLD---SYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         4 Ee~~~ElEAL~sIY~dd~~v~~---~~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      -.+..|+..|+.--+..+.+..   +.-..+.+.|.|...-   =..-.+.+.|.+|++||..||.|.+...
T Consensus         5 ~RL~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~P~~tp---yegg~f~~~i~fp~~YP~~PP~v~f~t~   73 (154)
T 1c4z_D            5 RRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPP---YDKGAFRIEINFPAEYPFKPPKITFKTK   73 (154)
T ss_dssp             TTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEECCCSSS---CCSCCEEEEEECCTTTTTSCCEEEESSC
T ss_pred             HHHHHHHHHHHhCCCCCEEEeeCCCCchheEEEEEeCCCCC---ccCCeEEEEEEeCCCCCCCCCEEEEeCC
Confidence            3577788887654444443222   1223555556554321   1122478999999999999999998764

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}

Probab=88.70  E-value=0.66  Score=38.86  Aligned_cols=62  Identities=8%  Similarity=0.133  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHhhcCCCceec--cCCCCeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            5 EVAMELEAVQAVYGDECVVL--DSYPPHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         5 e~~~ElEAL~sIY~dd~~v~--~~~~~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      .+..|+..|..   +.+.+.  .+.-..+.+.|. |...   .=..-.+.+.|.+|++||..||.|.+...
T Consensus         6 Rl~kEl~~l~~---~~~~v~~~~~~l~~w~~~i~Gp~~t---pyegg~f~~~i~fp~~YP~~pP~v~f~t~   70 (152)
T 2onu_A            6 RKQCDFTKLIM---AGYDLELNNGSTQDFDVMFHGPNGT---AYEGGIWKVHVTLPDDYPFASPSIGFMNK   70 (152)
T ss_dssp             HHHHTHHHHHH---HTCCEEEETTEEEEEEEEEECCTTS---TTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             HHHHHHHhcCc---CCCEEEEccCccceEEEEEECCCCC---cccceEEEEEEcCcccCCCCCCeEEEecC
Confidence            45667777653   122222  111224555554 3211   11223588999999999999999988653

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B

Probab=88.59  E-value=1.3  Score=36.26  Aligned_cols=66  Identities=21%  Similarity=0.331  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHhhc-CCCceecc--CC---CCeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            4 EEVAMELEAVQAVY-GDECVVLD--SY---PPHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         4 Ee~~~ElEAL~sIY-~dd~~v~~--~~---~~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      -.+..|+..|+.-- +..+.+..  ..   -..+.+.|. |...   .=..-.+.+.|.+|++||..||.|.+...
T Consensus         9 ~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~t---pyegg~f~~~i~fp~~YP~~PP~v~f~t~   81 (138)
T 1jat_B            9 FRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHS---NHENRIYSLSIDCGPNYPDSPPKVTFISK   81 (138)
T ss_dssp             HHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSS---TTTTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred             HHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCC---CccceEEEEEEECCCCCCCCCCceEEEcc
Confidence            36888999987642 33333221  11   235666665 3221   11223589999999999999999987653

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A

Probab=88.53  E-value=1.3  Score=37.46  Aligned_cols=64  Identities=28%  Similarity=0.289  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHhhcCCC-ceec--cCC---CCeeEEEEe-cC-CCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            5 EVAMELEAVQAVYGDE-CVVL--DSY---PPHLHLRIK-PR-TADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         5 e~~~ElEAL~sIY~dd-~~v~--~~~---~~~~~i~i~-p~-~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      .+..|+..|+.--++. +.+.  ...   -..+.+.|. |. +--    ..-.+.+.|.||++||..||.|.+...
T Consensus        29 RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpY----egG~f~l~i~fp~~YP~~PP~v~F~T~  100 (160)
T 2a4d_A           29 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIY----ENRIYSLKIECGPKYPEAPPFVRFVTK  100 (160)
T ss_dssp             HHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTT----TTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred             HHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCc----cCeEEEEEEECCCcCCCCCcEEEEecC
Confidence            5788999988643333 3322  222   235666665 32 211    123588999999999999999988654

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A

Probab=88.29  E-value=1  Score=38.51  Aligned_cols=65  Identities=15%  Similarity=0.212  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHh-h--c-----CC---Cceecc---CCCCeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCccc
Q 018975            4 EEVAMELEAVQA-V--Y-----GD---ECVVLD---SYPPHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRID   68 (348)
Q Consensus         4 Ee~~~ElEAL~s-I--Y-----~d---d~~v~~---~~~~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~   68 (348)
                      -.+..|+..|+. .  -     ++   -+.+..   +.-..+.+.|. |...   .=..-.+.+.|.||++||..||.|.
T Consensus         9 ~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~t---pyegg~f~~~i~fp~~YP~~PP~v~   85 (172)
T 2y9m_A            9 SRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDT---PYENHQFRILIEVPSSYPMNPPKIS   85 (172)
T ss_dssp             HHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTS---TTTTCEEEEEEECCTTTTTSCCEEE
T ss_pred             HHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCC---cccCCEEEEEEECCCcCCCCCCEEE
Confidence            368889999987 3  1     22   122221   22345666665 3221   1122358899999999999999999


Q ss_pred             ccC
Q 018975           69 LIE   71 (348)
Q Consensus        69 i~~   71 (348)
                      +..
T Consensus        86 f~t   88 (172)
T 2y9m_A           86 FMQ   88 (172)
T ss_dssp             ECT
T ss_pred             Eee
Confidence            876

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B

Probab=88.21  E-value=0.8  Score=38.48  Aligned_cols=65  Identities=11%  Similarity=0.036  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHhhcCCCceeccCC-------CCeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccC
Q 018975            4 EEVAMELEAVQAVYGDECVVLDSY-------PPHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIE   71 (348)
Q Consensus         4 Ee~~~ElEAL~sIY~dd~~v~~~~-------~~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~   71 (348)
                      -.+..|+..|+.-=+..+.+....       -..+.+.|. |...   .=..-.+.+.|.||++||..||.|.+..
T Consensus         7 ~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~t---pyegg~f~~~i~fp~~YP~~PP~v~f~t   79 (157)
T 2gjd_A            7 QRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGT---NWAGGVYPITVEYPNEYPSKPPKVKFPA   79 (157)
T ss_dssp             HHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTS---TTTTBEEEEEEECCTTTTTSCCEEECCT
T ss_pred             HHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCC---CcCCeEEEEEEEcCCCCCCCCCeeeccC
Confidence            468889988876444443332110       113344554 2211   1122358899999999999999999875

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=87.54  E-value=0.23  Score=38.21  Aligned_cols=34  Identities=15%  Similarity=0.313  Sum_probs=25.2

Q ss_pred             CCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHH
Q 018975          118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRW  158 (348)
Q Consensus       118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w  158 (348)
                      ...|+||+..+...       |.+..+.|.|.|+..|+..+
T Consensus         3 e~~C~~C~~~~~~~-------av~~C~~C~~~~C~~Cl~~~   36 (101)
T 2jun_A            3 KVLCQFCDQDPAQD-------AVKTCVTCEVSYCDECLKAT   36 (101)
T ss_dssp             CCBCTTCCSSSCCB-------CCEEETTTTEEECHHHHHHH
T ss_pred             CCCCcCCCCCCCCC-------ceEECCcCChHHhHHHCHHH
Confidence            46899999764221       23345899999999999984

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*

Probab=87.15  E-value=1.1  Score=40.90  Aligned_cols=66  Identities=20%  Similarity=0.281  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHhh---cCCCceec--cCCCCeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            4 EEVAMELEAVQAV---YGDECVVL--DSYPPHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         4 Ee~~~ElEAL~sI---Y~dd~~v~--~~~~~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      -.+..|+..|..-   -+..+.+.  .+.-..+.+.|. |...   .=..-.+.|.|.||++||..||.|.+...
T Consensus        60 ~RL~kEl~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~T---pYegG~f~l~i~fp~~YP~~PP~V~F~T~  131 (253)
T 3e46_A           60 QRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDT---PYEGGRYQLEIKIPETYPFNPPKVRFITK  131 (253)
T ss_dssp             HHHHHHHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTS---TTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             HHHHHHHHHHHhCCCCCCCCEEEEECCCcccEEEEEEECCCCC---CcCCCEEEEEEECCCCCCCCCCeeeecCC
Confidence            4678888888541   22233333  222345666665 3221   11223588999999999999999988664

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C

Probab=87.03  E-value=0.92  Score=39.47  Aligned_cols=64  Identities=11%  Similarity=0.273  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHhhcCCCceec----c--CCCC---eeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            4 EEVAMELEAVQAVYGDECVVL----D--SYPP---HLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         4 Ee~~~ElEAL~sIY~dd~~v~----~--~~~~---~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      -.+..|+..|+  -+..+.+.    .  +.-.   .+.+.|.|...   .=..-.+.+.|.||++||..||.|.+...
T Consensus        32 ~RL~kEl~~l~--~~~~i~~~~~~~p~~~nl~~~~~w~~~I~p~~t---pyegg~f~~~i~fp~~YP~~PP~v~f~t~  104 (190)
T 3o2u_A           32 IRLKRDLDSLD--LPPTVTLNVITSPDSADRSQSPKLEVIVRPDEG---YYNYGSINFNLDFNEVYPIEPPKVVCLKK  104 (190)
T ss_dssp             HHHHHHHHTCC--CCTTEEEEEEECTTCCCTTSCCEEEEEECCSSS---TTTTCCEEEEEECCTTTTTSCCEEEECSC
T ss_pred             HHHHHHHHhcc--CCCCEEEEecCCCCCccCCcCCeEEEEEcCCCC---CCCCCEEEEEEECCCCCCCCCceeEEecC
Confidence            35778888887  23344442    2  1223   56666765421   11223478999999999999999988764

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}

Probab=86.87  E-value=0.7  Score=39.90  Aligned_cols=63  Identities=11%  Similarity=0.140  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHhhcCCCceecc-CCCCeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            4 EEVAMELEAVQAVYGDECVVLD-SYPPHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         4 Ee~~~ElEAL~sIY~dd~~v~~-~~~~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      -.+..|+..|..   +.+.+.. +....+.+.|. |...   .=..-.+.+.|.||++||..||.|.+...
T Consensus        28 ~RL~kEl~~l~~---~g~~v~~~ddl~~W~~~I~GP~~t---pYegG~f~l~i~fp~~YP~~PP~V~F~t~   92 (179)
T 2z5d_A           28 RRMDTDVIKLIE---SKHEVTILGGLNEFVVKFYGPQGT---PYEGGVWKVRVDLPDKYPFKSPSIGFMNK   92 (179)
T ss_dssp             HHHHHHHHHHHH---SSSCEEEEEETTEEEEEEECCTTS---TTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             HHHHHHHHhcCc---CCCEEEECCCCceeEEEEECCCCC---CccCCEEEEEeeCCCCCCCCCceEEEecC
Confidence            467889988873   3333221 11245555554 2211   11123588999999999999999988763

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=86.80  E-value=1  Score=43.71  Aligned_cols=67  Identities=19%  Similarity=0.229  Sum_probs=40.9

Q ss_pred             CHHHHHHHHHHHHhhcCCCceeccCCC--CeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccC
Q 018975            2 AEEEVAMELEAVQAVYGDECVVLDSYP--PHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIE   71 (348)
Q Consensus         2 ~~Ee~~~ElEAL~sIY~dd~~v~~~~~--~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~   71 (348)
                      +.-.+..|+..|..-=+..+.+.....  ..+.+.|. |...   .=..-.+.+.|.+|++||..||.|.+..
T Consensus         4 a~~RL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~Gp~~t---pyegg~f~~~i~fp~~YP~~pP~v~f~t   73 (399)
T 4ddg_A            4 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDS---PYQGGVFFLTIHFPTDYPFKPPKVAFTT   73 (399)
T ss_dssp             HHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTS---SSTTCEEEEEEECCSSTTTSCCEEEESS
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEEcCCcceEEEEEEECCCCC---CCCCCEEEEEEECCcccCCCCcEEEeec
Confidence            345688899998864444443332111  24555555 3211   1122357899999999999999986544

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A

Probab=86.37  E-value=0.57  Score=40.69  Aligned_cols=24  Identities=13%  Similarity=0.372  Sum_probs=21.1

Q ss_pred             EEEEEEEcCCCCCCCCCcccccCC
Q 018975           49 EAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus        49 ~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      .+.|.|.||++||..||.|.+..+
T Consensus        90 ~f~l~i~fp~~YP~~PP~V~f~tp  113 (186)
T 1zuo_A           90 YILLNFSFKDNFPFDPPFVRVVLP  113 (186)
T ss_dssp             SEEEEEECCTTTTSSCCEEEEEES
T ss_pred             EEEEEEECCCCCCCCCCeEEEeCC
Confidence            588999999999999999987654

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1

Probab=84.52  E-value=1.2  Score=37.45  Aligned_cols=64  Identities=14%  Similarity=0.269  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHhhcCCCceec-cC--CCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            4 EEVAMELEAVQAVYGDECVVL-DS--YPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         4 Ee~~~ElEAL~sIY~dd~~v~-~~--~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      -.+..|+..|+.  +..+.+. ..  .-..+.+.|.|...-   =..-.+.+.|.+|++||..||.|.+...
T Consensus         9 ~RL~kEl~~l~~--~~~~~~~~~~~~~l~~w~~~igp~~tp---yegg~f~~~i~fp~~YP~~PP~v~f~t~   75 (160)
T 1y8x_A            9 LRIQKDINELNL--PKTCDISFSDPDDLLNFKLVICPDEGF---YKSGKFVFSFKVGQGYPHDPPKVKCETM   75 (160)
T ss_dssp             HHHHHHHHTCCC--CTTEEEECSSTTCTTEEEEEECCSSST---TTTBCEEEEEECCTTTTTSCCEEEECSC
T ss_pred             HHHHHHHHhcCC--CCCeEEEeccCCccceEEEEECCCCCC---CCCCEEEEEEeCCCcCCCCCCEEEEecC
Confidence            457788888842  2334332 11  223555555443221   1123478999999999999999998764

>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4

Probab=84.10  E-value=0.73  Score=38.69  Aligned_cols=25  Identities=32%  Similarity=0.542  Sum_probs=21.9

Q ss_pred             EEEEEEEcCCCCCCCCCcccccCCC
Q 018975           49 EAVIGIRASPKYPEHPPRIDLIESK   73 (348)
Q Consensus        49 ~i~L~i~lp~~YP~~~P~i~i~~~~   73 (348)
                      .+.|.|.+|.+||..||.|.+....
T Consensus        86 eFkLefdiP~tYP~tPPeI~Fp~ld  110 (168)
T 3kpa_A           86 EFEMNFDIPVTYPQAPPEIALPELE  110 (168)
T ss_dssp             EEEEEEECCTTTTTSCCCCBCGGGT
T ss_pred             EEEEEEeCCccCCCCCCEeeccccc
Confidence            5899999999999999999985543

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1

Probab=83.77  E-value=1.6  Score=37.56  Aligned_cols=64  Identities=14%  Similarity=0.278  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHhhcCCCceec-c--CCCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            4 EEVAMELEAVQAVYGDECVVL-D--SYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         4 Ee~~~ElEAL~sIY~dd~~v~-~--~~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      -.+..|+..|+.  ++.+.+. .  +.-..+.+.|.|...   .=..-.+.+.|.||++||..||.|.+...
T Consensus        29 ~RL~kEl~~l~~--~~~i~~~~p~~~nl~~W~~~igP~~t---pYegg~f~~~i~fp~~YP~~PP~v~F~t~   95 (180)
T 2nvu_C           29 LRIQKDINELNL--PKTCDISFSDPDDLLNFKLVICPDEG---FYKSGKFVFSFKVGQGYPHDPPKVKCETM   95 (180)
T ss_dssp             HHHHHHHHTCCC--CTTEEEECSSTTCTTEEEEEECCCSG---GGTTBCEEEEEECCTTTTTSCCEEEECSC
T ss_pred             HHHHHHHHhcCC--CCCeEEEecccccccceEEEECCCCC---CCCCCEEEEEEeCCCcCCCCCCcCceecc
Confidence            357778888832  2334332 1  122355555544321   11123478999999999999999998764

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}

Probab=81.79  E-value=1.9  Score=36.72  Aligned_cols=65  Identities=28%  Similarity=0.265  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHhhcCCC-ceec--cCC---CCeeEEEEe-cC-CCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            4 EEVAMELEAVQAVYGDE-CVVL--DSY---PPHLHLRIK-PR-TADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         4 Ee~~~ElEAL~sIY~dd-~~v~--~~~---~~~~~i~i~-p~-~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      -.+..|+..|+.=-++. +.+.  ...   -..+.+.|. |. +-.    ..-.+.+.|.||++||..||.|.+...
T Consensus        38 ~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpY----egG~f~l~i~fp~~YP~~PP~v~F~T~  110 (170)
T 2hlw_A           38 FRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIY----ENRIYSLKIECGPKYPEAPPFVRFVTK  110 (170)
T ss_dssp             HHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTT----SSCCBCEEEECCSSCTTSCCEEEECBC
T ss_pred             HHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCc----CCcEEEEEEECCCCCCCCCCeeEEecc
Confidence            35788898887632222 2222  111   235666665 32 211    122368899999999999999987654

>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A

Probab=80.96  E-value=1  Score=38.51  Aligned_cols=24  Identities=29%  Similarity=0.378  Sum_probs=21.3

Q ss_pred             EEEEEEEcCCCCCCCCCcccccCC
Q 018975           49 EAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus        49 ~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      .+.|.|.||..||..||.|.+...
T Consensus        84 ~F~L~~~fPe~YP~~PPeV~F~~~  107 (172)
T 2z6o_A           84 EFDIEFDIPITYPTTAPEIAVPEL  107 (172)
T ss_dssp             EEEEEEECCTTTTTSCCCCBCGGG
T ss_pred             EEEEEEECCCCCCCCCCeeeeCCC
Confidence            689999999999999999988543

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1

Probab=80.88  E-value=3.2  Score=35.30  Aligned_cols=64  Identities=11%  Similarity=0.170  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHhhcCCCceeccCCCCeeEEEEe-cCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            4 EEVAMELEAVQAVYGDECVVLDSYPPHLHLRIK-PRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         4 Ee~~~ElEAL~sIY~dd~~v~~~~~~~~~i~i~-p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      -.+..|+..|..-= ..+. ..+.-..+.+.|. |...   .=..-.+.+.|.||++||..||.|.+...
T Consensus        15 ~RL~~El~~l~~~~-~~v~-~~~~l~~w~~~I~GP~~t---pyegg~f~~~i~fp~~YP~~PP~v~F~t~   79 (171)
T 1yf9_A           15 RRREMDYMRLCNST-RKVY-PSDTVAEFWVEFKGPEGT---PYEDGTWMLHVQLPSDYPFKSPSIGFCNR   79 (171)
T ss_dssp             HHHHHHHHHHHSSS-SCEE-ECSSTTEEEEEEECCTTS---TTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             HHHHHHHHHHHhCC-CCCC-CCCCceEEEEEEECCCCC---CccCceEEEEEEcCCCCCCCCCeEEeecC
Confidence            45778888887421 1121 1222345666665 3211   11123588999999999999999987653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	348
d2daya1	115	d.20.1.3 (A:8-122) E3 ubiquitin-protein ligase RNF	4e-18
d1ukxa_	137	d.20.1.3 (A:) EIF2-alpha kinase 4 (GCN2-like prote	3e-17
d2daxa1	140	d.20.1.3 (A:8-147) Uncharacterized protein C21orf6	2e-05
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	1e-04
d3dplr1	88	g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S	5e-04
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	5e-04
d1v87a_	114	g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mou	0.002
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	0.003
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	0.003
d2dawa1	141	d.20.1.3 (A:8-148) RWD domain-containing protein 2	0.004
d1vyxa_	60	g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do	0.004

>d2daya1 d.20.1.3 (A:8-122) E3 ubiquitin-protein ligase RNF25 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: E3 ubiquitin-protein ligase RNF25
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.9 bits (189), Expect = 4e-18
 Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 4/107 (3%)

Query: 9   ELEAVQAVYGDECVVLDS----YPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHP 64
           E+E ++++Y DE  V+       P  +++ + P TA+    Q+V   + ++   +YP   
Sbjct: 9   EVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEV 68

Query: 65  PRIDLIESKGLDDQRQKHLISCIQDKAHELTSCLMLVALCEEAVAKL 111
           P+I +   +GL D++   ++  +   A       ML  L E+    L
Sbjct: 69  PQISIRNPRGLSDEQIHTILQVLGHVAKAGLGTAMLYELIEKGKEIL 115

>d1ukxa_ d.20.1.3 (A:) EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mus musculus) [TaxId: 10090]} Length = 137

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: EIF2-alpha kinase 4 (GCN2-like protein)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.1 bits (184), Expect = 3e-17
 Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 8/122 (6%)

Query: 3   EEEVAMELEAVQAVYGDECVVLDS-------YPPHLHLRIKPRTADVSSQQFVEAVIGIR 55
            +    EL+A++A+YG +   L          PP ++L + P+      + +V+  + ++
Sbjct: 12  SQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLYPQGLA-GEEVYVQVELRVK 70

Query: 56  ASPKYPEHPPRIDLIESKGLDDQRQKHLISCIQDKAHELTSCLMLVALCEEAVAKLSAMN 115
             P YP+  P IDL  +KGL ++    L S +++ A +    +M+  L     + LS  N
Sbjct: 71  CPPTYPDVVPEIDLKNAKGLSNESVNLLKSHLEELAKKQCGEVMIFELAHHVQSFLSEHN 130

Query: 116 HP 117
             
Sbjct: 131 KS 132

>d2daxa1 d.20.1.3 (A:8-147) Uncharacterized protein C21orf6 {Human (Homo sapiens) [TaxId: 9606]} Length = 140

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: Uncharacterized protein C21orf6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (97), Expect = 2e-05
 Identities = 15/121 (12%), Positives = 35/121 (28%), Gaps = 20/121 (16%)

Query: 4   EEVAMELEAVQAVYGDE-CVVLDSY------------------PPHLHLRIKPRTADVSS 44
           E    EL+ + +++  E  ++++                       ++  I     DVS 
Sbjct: 4   EAQLAELDLLASMFPGENELIVNDQLAVAELKDCIEKKTMEGRSSKVYFTINMNL-DVSD 62

Query: 45  QQFVEAVIGIRASPKYPEHPPRIDLIESKGLDDQRQKHLISCIQDKAHELTSCLMLVALC 104
           ++     +      KYP   P I +        Q+ +                + ++   
Sbjct: 63  EKMAMFSLACILPFKYPAVLPEITVRSVLLSRSQQTQLNTDLTAFLQKHCHGDVCILNAT 122

Query: 105 E 105
           E
Sbjct: 123 E 123

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 37.5 bits (87), Expect = 1e-04
 Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 6/43 (13%)

Query: 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN 160
             +C +CL       +    LP      C H FH+EC+  W  
Sbjct: 5   GVECAVCLAE-LEDGEEARFLP-----RCGHGFHAECVDMWLG 41

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 5e-04
 Identities = 15/109 (13%), Positives = 26/109 (23%), Gaps = 41/109 (37%)

Query: 107 AVAKLSAMNHPDGDCPLCLYPLFR--------KDKNVEVLPFMKLMSCFHCFHSECIVRW 158
           AVA  +  +    +C +C   +          +         +    C H FH  CI RW
Sbjct: 11  AVALWAW-DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRW 69

Query: 159 WNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCPVCRKVFHVK 207
                                                 CP+  + +  +
Sbjct: 70  LK--------------------------------TRQVCPLDNREWEFQ 86

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (82), Expect = 5e-04
 Identities = 13/96 (13%), Positives = 19/96 (19%), Gaps = 36/96 (37%)

Query: 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPN 177
           D  CP C    +R      ++       C H     C+   +                  
Sbjct: 3   DQGCPRCKTTKYRNPSLKLMVN-----VCGHTLCESCVDLLFVR---------------- 41

Query: 178 TDMRNQKDMLGPIDGNMGTCPVCRKVFHVKDLEHVL 213
                            G CP C       +    L
Sbjct: 42  ---------------GAGNCPECGTPLRKSNFRVQL 62

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 17/113 (15%), Positives = 32/113 (28%), Gaps = 37/113 (32%)

Query: 105 EEAVAKLS--AMNHPDGDCPLCLYPLFRKDKNVEVLP--------FMKLMSCFHCFHSEC 154
           E+ + K +      P+ DC +C+  L       ++            +L  C H FH  C
Sbjct: 10  EQVIRKYTEELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLC 69

Query: 155 IVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCPVCRKVFHVK 207
           ++  +                                     CP C+ ++  K
Sbjct: 70  LLAMYCNGNKDGSL---------------------------QCPSCKTIYGEK 95

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.2 bits (75), Expect = 0.003
 Identities = 11/41 (26%), Positives = 14/41 (34%), Gaps = 6/41 (14%)

Query: 120 DCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN 160
           +CPLC+ PL   D N           C +     C  R   
Sbjct: 2   ECPLCMEPLEIDDINFFPCT------CGYQICRFCWHRIRT 36

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.1 bits (78), Expect = 0.003
 Identities = 22/118 (18%), Positives = 31/118 (26%), Gaps = 49/118 (41%)

Query: 93  ELTSCLMLVALCEEAVAKLSAMNHPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHS 152
            L++ L+ V      V  +S        C +C            +L      SC H F  
Sbjct: 6   HLSTKLLAVDFPAHFVKSIS--------CQICE----------HILADPVETSCKHLFCR 47

Query: 153 ECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCPVCRKVFHVKDLE 210
            CI+R    + +                                CP CR      DLE
Sbjct: 48  ICILRCLKVMGS-------------------------------YCPSCRYPCFPTDLE 74

>d2dawa1 d.20.1.3 (A:8-148) RWD domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 141

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: RWD domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (80), Expect = 0.004
 Identities = 14/117 (11%), Positives = 38/117 (32%), Gaps = 16/117 (13%)

Query: 4   EEVAMELEAVQAVYGDE-CVVLDSYPPHLHLRIKPRTADVS-------------SQQFVE 49
           +   +E+E + +++ ++  V L+      +++        +              +  V+
Sbjct: 10  QLQLLEMEMLFSMFPNQGEVKLEDVNALTNIKRYLEGTREALPPKIEFVITLQIEEPKVK 69

Query: 50  AVIGIRASPKYPEHPPRIDLIESKGLDDQRQKHLISCIQDKAHELTS-CLMLVALCE 105
             + +     YP    ++    S  LD  +Q  L   +           L + A  +
Sbjct: 70  IDLQVTMPHSYPYLALQLF-GRSSELDRHQQLLLNKGLTSYIGTFDPGELCVCAAIQ 125

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

 Score = 33.3 bits (75), Expect = 0.004
 Identities = 10/90 (11%), Positives = 16/90 (17%), Gaps = 32/90 (35%)

Query: 118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPN 177
           D D P+C                          H  C+  W                   
Sbjct: 3   DEDVPVCWICNEELGNERFRACGCT--GELENVHRSCLSTWLTI---------------- 44

Query: 178 TDMRNQKDMLGPIDGNMGTCPVCRKVFHVK 207
                              C +C  V++ +
Sbjct: 45  --------------SRNTACQICGVVYNTR 60

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	348
d2daya1	115	E3 ubiquitin-protein ligase RNF25 {Human (Homo sap	99.84
d1ukxa_	137	EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mu	99.83
d2daxa1	140	Uncharacterized protein C21orf6 {Human (Homo sapie	99.61
d2dawa1	141	RWD domain-containing protein 2 {Human (Homo sapie	99.59
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.42
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.38
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	99.28
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.27
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.23
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	99.21
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.2
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.1
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.09
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.07
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	98.85
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	98.84
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.83
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	98.82
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	98.76
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.54
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.4
d1z2ua1	147	Ubiquitin conjugating enzyme, UBC {Caenorhabditis	95.35
d2a7la1	117	Ubiquitin-protein ligase W (E2 W) {Human (Homo sap	93.18
d2fo3a1	109	Putative ubiquitin-conjugating enzyme, E2 domain {	93.13
d2awfa1	125	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	93.06
d1ayza_	153	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	92.38
d2e2ca_	156	Ubiquitin conjugating enzyme, UBC {Clam (Spisula s	92.22
d1yh2a1	154	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	92.07
d2uyza1	156	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	91.85
d1i7ka_	146	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	91.7
d2f4wa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	91.47
d1z3da1	149	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	91.4
d1j7db_	149	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	91.08
d1jata_	152	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	90.97
d1zdna1	151	Ubiquitin conjugating enzyme, UBC {Human(Homo sapi	90.43
d1yrva1	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	90.41
d2bepa1	154	Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain	90.32
d1y6la_	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	90.18
d1wzva1	150	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	90.07
d1fzya_	149	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	89.66
d2ucza_	164	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	89.51
d2a4da1	139	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	89.42
d1y8xa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	89.0
d1pzva_	161	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	87.37
d1wila_	89	Hypothetical protein KIAA1045 {Human (Homo sapiens	86.35
d1jatb_	136	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	84.57
d1c4zd_	144	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	83.97
d1yf9a1	158	Ubiquitin conjugating enzyme, UBC {Leishmania majo	82.95
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	80.16
d1s1qa_	141	Tumor susceptibility gene 101 (TSG101) {Human (Hom	80.04
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	80.02

>d2daya1 d.20.1.3 (A:8-122) E3 ubiquitin-protein ligase RNF25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: E3 ubiquitin-protein ligase RNF25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=5.1e-21  Score=155.00  Aligned_cols=107  Identities=23%  Similarity=0.411  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHhhcCCCceeccCC----CCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCCCCCCHHHH
Q 018975            5 EVAMELEAVQAVYGDECVVLDSY----PPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIESKGLDDQRQ   80 (348)
Q Consensus         5 e~~~ElEAL~sIY~dd~~v~~~~----~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~~GL~~~~i   80 (348)
                      -+++|||||+|||+|+|.+....    +..|.|++.|..+++....++++.|.|.+|++||..+|.+.+.+++||+..++
T Consensus         5 ~~~~EleaL~SIY~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~L~~~~p~~YP~~~P~i~~~~~~~l~~~~~   84 (115)
T d2daya1           5 VLPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNPRGLSDEQI   84 (115)
T ss_dssp             HHHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEEEESSCHHHH
T ss_pred             hHHHHHHHHHhHCCCceEEeccCCCCCCeEEEEEEecCCCCCCcccceEEEEEEEcCCCCCCCCCcEEeeccCCCCHHHH
Confidence            47999999999999999888653    34688999998887777889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCchhhHHHHHHHHHh
Q 018975           81 KHLISCIQDKAHELTSCLMLVALCEEAVAKL  111 (348)
Q Consensus        81 ~~L~~~L~~~~ee~~G~~ml~elie~~kE~L  111 (348)
                      ..|.+.|...++++.|++|+|+++++++++|
T Consensus        85 ~~L~~~l~~~~~e~~G~~mif~lv~~~qE~L  115 (115)
T d2daya1          85 HTILQVLGHVAKAGLGTAMLYELIEKGKEIL  115 (115)
T ss_dssp             HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCEEHHHHHHHHHhhC
Confidence            9999999999999999999999999999986

>d1ukxa_ d.20.1.3 (A:) EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: EIF2-alpha kinase 4 (GCN2-like protein)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=1.2e-20  Score=157.51  Aligned_cols=114  Identities=26%  Similarity=0.475  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHhhcCCCceeccC-------CCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCCCCC
Q 018975            3 EEEVAMELEAVQAVYGDECVVLDS-------YPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIESKGL   75 (348)
Q Consensus         3 ~Ee~~~ElEAL~sIY~dd~~v~~~-------~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~~GL   75 (348)
                      +|+|++|||||+|||+|+|.++..       .+..|.|.+.|...++ ....+++.|.|.+|++||..+|.+.+.+.+||
T Consensus        12 ~E~Q~~EleaL~SIY~dd~~~~~~~~~~~~~~~~~~~i~i~~~~~~~-~~~~~~i~L~~~lp~~YP~~~P~i~~~~~~~l   90 (137)
T d1ukxa_          12 SQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLYPQGLAG-EEVYVQVELRVKCPPTYPDVVPEIDLKNAKGL   90 (137)
T ss_dssp             HHHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEECCTTSCS-SSCSCEEEEEECCCTTTTSSCCCCEEEEEESS
T ss_pred             HHHHHHHHHHHHHHcCCceEEecccccccccCCCeEEEEEeccCCCC-ccceEEEEEEEECCCCCCcccceEEEecCCCC
Confidence            689999999999999999988753       3457899999876544 55778999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhhhCCCC
Q 018975           76 DDQRQKHLISCIQDKAHELTSCLMLVALCEEAVAKLSAMNHP  117 (348)
Q Consensus        76 ~~~~i~~L~~~L~~~~ee~~G~~ml~elie~~kE~Lte~n~~  117 (348)
                      +..++..|.+.|...+++..|++|+|+++++++++|.++|.+
T Consensus        91 ~~~~~~~L~~~l~~~~~e~~G~~mif~lv~~lqe~L~e~n~~  132 (137)
T d1ukxa_          91 SNESVNLLKSHLEELAKKQCGEVMIFELAHHVQSFLSEHNKS  132 (137)
T ss_dssp             SSSHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHCCC
T ss_pred             CHHHHHHHHHHHHHHHHHcCCCEeHHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999999999999999999998743

>d2daxa1 d.20.1.3 (A:8-147) Uncharacterized protein C21orf6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: Uncharacterized protein C21orf6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.6e-15  Score=124.42  Aligned_cols=108  Identities=13%  Similarity=0.135  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHhhcCCCceeccC---------------------CCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCC
Q 018975            3 EEEVAMELEAVQAVYGDECVVLDS---------------------YPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYP   61 (348)
Q Consensus         3 ~Ee~~~ElEAL~sIY~dd~~v~~~---------------------~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP   61 (348)
                      .|.|.+|||||+|||+++.++...                     ....|.+++.....   ....+.+.|.|.+|++||
T Consensus         3 ~E~Q~~EleaL~SIY~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~---~~~~~~l~L~~~lP~~YP   79 (140)
T d2daxa1           3 AEAQLAELDLLASMFPGENELIVNDQLAVAELKDCIEKKTMEGRSSKVYFTINMNLDVS---DEKMAMFSLACILPFKYP   79 (140)
T ss_dssp             HHHHHHHHHHHHHHCCSSSSEEESCHHHHHHHHHHHHHTCCCCCCSCEEEEEEEEEECS---TTCEEEEEEEEEECSSTT
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEecccchhhhhhhccccccccCCCCceeEEEeeccCcc---cccCceEEEEEEecCcCC
Confidence            478999999999999877443311                     11245555543222   335788999999999999


Q ss_pred             CCCCcccccCCCCCCHHHHHHHHHHHHHHHHHh-cCCchhhHHHHHHHHHhhhC
Q 018975           62 EHPPRIDLIESKGLDDQRQKHLISCIQDKAHEL-TSCLMLVALCEEAVAKLSAM  114 (348)
Q Consensus        62 ~~~P~i~i~~~~GL~~~~i~~L~~~L~~~~ee~-~G~~ml~elie~~kE~Lte~  114 (348)
                      ..+|.|.+.+. +++..+...|.+.+...+.+. .|++|+|.+++++++++...
T Consensus        80 ~~~P~i~l~~~-~l~~~~~~~l~~~l~~~~~~~~~Ge~~if~lve~lqe~~~~~  132 (140)
T d2daxa1          80 AVLPEITVRSV-LLSRSQQTQLNTDLTAFLQKHCHGDVCILNATEWVREHASGY  132 (140)
T ss_dssp             SSCCCCEEECT-TSCHHHHHHHHHHHHHHHHHSSCSSCCSHHHHHHHHHHHHHH
T ss_pred             CcCCceeccCC-CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence            99999998766 788888889999998888775 69999999999999998763

>d2dawa1 d.20.1.3 (A:8-148) RWD domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: RWD domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2.7e-15  Score=124.74  Aligned_cols=105  Identities=14%  Similarity=0.144  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHhhcCCCceeccC------------------CCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCC
Q 018975            4 EEVAMELEAVQAVYGDECVVLDS------------------YPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPP   65 (348)
Q Consensus         4 Ee~~~ElEAL~sIY~dd~~v~~~------------------~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P   65 (348)
                      |.|.+|||||+|||+++.++...                  .+..+.+.+....    ....+.+.|.|.+|++||..+|
T Consensus        10 e~Q~~ElEaL~SIY~~e~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----~~~~~~i~L~~~lp~~YP~~~P   85 (141)
T d2dawa1          10 QLQLLEMEMLFSMFPNQGEVKLEDVNALTNIKRYLEGTREALPPKIEFVITLQI----EEPKVKIDLQVTMPHSYPYLAL   85 (141)
T ss_dssp             HHHHHHHHHHHHHCCSTTSEEESCGGGTHHHHHHHHTSCCSCCCCEEEEEEEEE----TTTTEEEEEEEEECSSTTSSCC
T ss_pred             HHHHHHHHHHHhhCCCCCEEEecCchhhhHHHHhhcCcccccCcceEEEEeccc----CCccceEEEEEEeCCCCCCCCC
Confidence            67999999999999876443321                  1334444444322    2346889999999999999999


Q ss_pred             cccccCCCCCCHHHHHHHHHHHHHHHHHh-cCCchhhHHHHHHHHHhhh
Q 018975           66 RIDLIESKGLDDQRQKHLISCIQDKAHEL-TSCLMLVALCEEAVAKLSA  113 (348)
Q Consensus        66 ~i~i~~~~GL~~~~i~~L~~~L~~~~ee~-~G~~ml~elie~~kE~Lte  113 (348)
                      .|.+.+ .|++..++..|...|...+.+. .|++|+|++++++++++..
T Consensus        86 ~i~~~~-~~l~~~~~~~l~~~l~~~~~e~~~Ge~mif~lv~~lqe~~~~  133 (141)
T d2dawa1          86 QLFGRS-SELDRHQQLLLNKGLTSYIGTFDPGELCVCAAIQWLQDNSAS  133 (141)
T ss_dssp             EEEEEC-SSSCHHHHHHHHHHHHHHHTTSCTTSCSHHHHHHHHHHTTHH
T ss_pred             Cceeec-cccCHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH
Confidence            999876 6899999999999999999876 6999999999999988754

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.42  E-value=2.8e-14  Score=99.96  Aligned_cols=37  Identities=32%  Similarity=0.689  Sum_probs=30.2

Q ss_pred             CCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHH
Q 018975          118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWN  160 (348)
Q Consensus       118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~  160 (348)
                      ..+|+|||+.|..++..      .+++.|+|.||..||.+|++
T Consensus         5 ~~~C~ICl~~~~~~~~~------~~l~~C~H~Fh~~Ci~~Wl~   41 (55)
T d1iyma_           5 GVECAVCLAELEDGEEA------RFLPRCGHGFHAECVDMWLG   41 (55)
T ss_dssp             SCCCTTTCCCCCTTSCC------EECSSSCCEECTTHHHHTTT
T ss_pred             CCCCeEECccccCCCEE------EEeCCCCCcccHHHHHHHHH
Confidence            46899999999876653      23457999999999999974

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=6.1e-14  Score=97.06  Aligned_cols=50  Identities=34%  Similarity=0.640  Sum_probs=39.5

Q ss_pred             CCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCCC
Q 018975          120 DCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCPV  199 (348)
Q Consensus       120 ~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CPv  199 (348)
                      +|||||+.|..++..      .+.++|+|.||..||.+|++                               .....||+
T Consensus         2 eCpICl~~~~~~~~~------~~~~~CgH~~c~~C~~~w~~-------------------------------~~~~~CP~   44 (52)
T d1ur6b_           2 ECPLCMEPLEIDDIN------FFPCTCGYQICRFCWHRIRT-------------------------------DENGLCPA   44 (52)
T ss_dssp             EETTTTEECCGGGTT------CCSSSSSCCCCHHHHHHHTT-------------------------------TSCCBCTT
T ss_pred             CCcCCChhhhCCCce------EEecCCCCccchHHHHHHHh-------------------------------hcCCCCCc
Confidence            799999999765542      13479999999999999964                               23457999


Q ss_pred             CCcccCc
Q 018975          200 CRKVFHV  206 (348)
Q Consensus       200 CR~~~~~  206 (348)
                      ||+++..
T Consensus        45 CR~~~~~   51 (52)
T d1ur6b_          45 CRKPYPE   51 (52)
T ss_dssp             TCCBCSC
T ss_pred             cCCcCCC
Confidence            9999865

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.28  E-value=1.1e-12  Score=104.92  Aligned_cols=65  Identities=23%  Similarity=0.540  Sum_probs=44.9

Q ss_pred             CCCCCCCccccccccCCCC--------ccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccC
Q 018975          116 HPDGDCPLCLYPLFRKDKN--------VEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDML  187 (348)
Q Consensus       116 ~~~~~C~ICl~~f~~~~~~--------~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~  187 (348)
                      .++.+|+||++.|......        .....+..+++|+|.||..||..|++..+.                       
T Consensus        23 ~~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~-----------------------   79 (114)
T d1v87a_          23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNK-----------------------   79 (114)
T ss_dssp             CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCC-----------------------
T ss_pred             cccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCc-----------------------
Confidence            4567899999998642110        011123446899999999999999873221                       


Q ss_pred             CCCCCCCCCCCCCCcccCcc
Q 018975          188 GPIDGNMGTCPVCRKVFHVK  207 (348)
Q Consensus       188 ~~~~~~~~~CPvCR~~~~~~  207 (348)
                          ..+..||+||.++..+
T Consensus        80 ----~~~~~CP~CR~~~~~~   95 (114)
T d1v87a_          80 ----DGSLQCPSCKTIYGEK   95 (114)
T ss_dssp             ----SSCCBCTTTCCBSSSC
T ss_pred             ----CCCCccccccchhccC
Confidence                2356899999988654

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.3e-12  Score=94.41  Aligned_cols=57  Identities=23%  Similarity=0.567  Sum_probs=42.1

Q ss_pred             CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975          117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT  196 (348)
Q Consensus       117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (348)
                      .+..||||++.+......    .++ .++|+|.||..||..|++                               .....
T Consensus         2 dd~~CpIC~~~~~~~~~~----~~~-~~~C~H~fc~~Ci~~~~~-------------------------------~~~~~   45 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSL----KLM-VNVCGHTLCESCVDLLFV-------------------------------RGAGN   45 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSC----CEE-ECTTCCCEEHHHHHHHHH-------------------------------TTSSS
T ss_pred             CCCCCCcCCceeecCCce----EEE-eCccChHhhHHHHHHHhC-------------------------------cCcCC
Confidence            457999999876443221    122 379999999999999986                               23457


Q ss_pred             CCCCCcccCccch
Q 018975          197 CPVCRKVFHVKDL  209 (348)
Q Consensus       197 CPvCR~~~~~~d~  209 (348)
                      ||+||++|...++
T Consensus        46 CP~CR~~i~~~~~   58 (65)
T d1g25a_          46 CPECGTPLRKSNF   58 (65)
T ss_dssp             CTTTCCCCSSCCC
T ss_pred             CCCCCcCcccccc
Confidence            9999999976553

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.23  E-value=2e-12  Score=94.15  Aligned_cols=49  Identities=31%  Similarity=0.721  Sum_probs=38.9

Q ss_pred             CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975          117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT  196 (348)
Q Consensus       117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (348)
                      ....|+||++.|..        +. ..++|+|.||..||.+|++                                .+..
T Consensus         4 ~~d~C~IC~~~~~~--------~~-~~~~C~H~Fc~~Ci~~w~~--------------------------------~~~~   42 (68)
T d1chca_           4 VAERCPICLEDPSN--------YS-MALPCLHAFCYVCITRWIR--------------------------------QNPT   42 (68)
T ss_dssp             CCCCCSSCCSCCCS--------CE-EETTTTEEESTTHHHHHHH--------------------------------HSCS
T ss_pred             CCCCCccCCcCccC--------Cc-EEeCCCCcCcHHHHHHHHH--------------------------------hCCc
Confidence            34789999999853        11 2489999999999999986                                3457


Q ss_pred             CCCCCcccCc
Q 018975          197 CPVCRKVFHV  206 (348)
Q Consensus       197 CPvCR~~~~~  206 (348)
                      ||+||.+|..
T Consensus        43 CP~CR~~i~~   52 (68)
T d1chca_          43 CPLCKVPVES   52 (68)
T ss_dssp             TTTTCCCCCC
T ss_pred             CCCCCcchHh
Confidence            9999998853

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=4.2e-12  Score=97.11  Aligned_cols=58  Identities=22%  Similarity=0.506  Sum_probs=42.3

Q ss_pred             CCCCCCCccccccccCCCC---------ccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCccccccccc
Q 018975          116 HPDGDCPLCLYPLFRKDKN---------VEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDM  186 (348)
Q Consensus       116 ~~~~~C~ICl~~f~~~~~~---------~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~  186 (348)
                      ....+|+||+..|......         ....+. .+++|+|.||..||.+|+.                          
T Consensus        19 ~~~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~C~H~FH~~Ci~~Wl~--------------------------   71 (88)
T d3dplr1          19 IVVDNCAICRNHIMDLCIECQANQASATSEECTV-AWGVCNHAFHFHCISRWLK--------------------------   71 (88)
T ss_dssp             SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCE-EEETTSCEEEHHHHHHHHT--------------------------
T ss_pred             CCCCcCEEccchhhCccccccccccccccccCCe-EEccccCcccHHHHHHHHH--------------------------
Confidence            4567899999998653211         111122 3589999999999999985                          


Q ss_pred             CCCCCCCCCCCCCCCcccCc
Q 018975          187 LGPIDGNMGTCPVCRKVFHV  206 (348)
Q Consensus       187 ~~~~~~~~~~CPvCR~~~~~  206 (348)
                            .+.+||+||.++..
T Consensus        72 ------~~~~CP~CR~~~~~   85 (88)
T d3dplr1          72 ------TRQVCPLDNREWEF   85 (88)
T ss_dssp             ------TCSBCSSSCSBCCE
T ss_pred             ------HCCcCCCCCCcccc
Confidence                  45689999998854

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=9.3e-12  Score=93.30  Aligned_cols=54  Identities=20%  Similarity=0.421  Sum_probs=40.7

Q ss_pred             hCCCCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCC
Q 018975          113 AMNHPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDG  192 (348)
Q Consensus       113 e~n~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (348)
                      +.+.....|+||++.+..        |.  +++|+|.||..||.+|+.                               .
T Consensus        18 ~~~~~~~~C~IC~~~~~~--------~~--~~~CgH~fC~~Ci~~wl~-------------------------------~   56 (79)
T d1fbva4          18 EMGSTFQLCKICAENDKD--------VK--IEPCGHLMCTSCLTSWQE-------------------------------S   56 (79)
T ss_dssp             TTSCCTTBCTTTSSSBCC--------EE--CSSSCCEECHHHHHHHHH-------------------------------T
T ss_pred             hcCCCCCCCccCCCcCCC--------eE--EeCCCCeeeHHHHHHHHH-------------------------------H
Confidence            333334579999988753        33  489999999999999985                               2


Q ss_pred             CCCCCCCCCcccCcc
Q 018975          193 NMGTCPVCRKVFHVK  207 (348)
Q Consensus       193 ~~~~CPvCR~~~~~~  207 (348)
                      ....||+||..|...
T Consensus        57 ~~~~CP~Cr~~i~~~   71 (79)
T d1fbva4          57 EGQGCPFCRCEIKGT   71 (79)
T ss_dssp             TCCSCTTTCCCCCCC
T ss_pred             CcCcCCCCCcCccCC
Confidence            345799999999653

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=5.5e-11  Score=93.33  Aligned_cols=51  Identities=25%  Similarity=0.646  Sum_probs=39.9

Q ss_pred             CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCC
Q 018975          119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCP  198 (348)
Q Consensus       119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP  198 (348)
                      ..|+||++.|.+        |++  ++|+|.||..||.+||+..                             .....||
T Consensus        22 l~CpIC~~~~~~--------pv~--~~CgH~fC~~Ci~~~~~~~-----------------------------~~~~~CP   62 (103)
T d1jm7a_          22 LECPICLELIKE--------PVS--TKCDHIFCKFCMLKLLNQK-----------------------------KGPSQCP   62 (103)
T ss_dssp             TSCSSSCCCCSS--------CCB--CTTSCCCCSHHHHHHHHSS-----------------------------SSSCCCT
T ss_pred             cCCCccCchhCC--------eEE--cCCCCchhhHHHHHHHHHC-----------------------------CCCCcCc
Confidence            489999999864        544  7999999999999998611                             1235799


Q ss_pred             CCCcccCccc
Q 018975          199 VCRKVFHVKD  208 (348)
Q Consensus       199 vCR~~~~~~d  208 (348)
                      +||.++...+
T Consensus        63 ~Cr~~~~~~~   72 (103)
T d1jm7a_          63 LCKNDITKRS   72 (103)
T ss_dssp             TTSCCCCTTT
T ss_pred             CCCCcCChhh
Confidence            9999996654

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.09  E-value=1.6e-11  Score=93.37  Aligned_cols=50  Identities=34%  Similarity=0.569  Sum_probs=40.7

Q ss_pred             CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCC
Q 018975          119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCP  198 (348)
Q Consensus       119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP  198 (348)
                      ..|+||++.|.+        |.+  |+|+|.||..||.+|++                               .....||
T Consensus        24 l~C~IC~~~~~~--------pv~--~~CgH~FC~~Ci~~~~~-------------------------------~~~~~CP   62 (86)
T d1rmda2          24 ISCQICEHILAD--------PVE--TSCKHLFCRICILRCLK-------------------------------VMGSYCP   62 (86)
T ss_dssp             TBCTTTCSBCSS--------EEE--CTTSCEEEHHHHHHHHH-------------------------------HTCSBCT
T ss_pred             cCCccCCcchhc--------cee--cCCCChhhHHHHHHHHh-------------------------------hCCCcCc
Confidence            479999999864        444  89999999999999986                               1234699


Q ss_pred             CCCcccCccch
Q 018975          199 VCRKVFHVKDL  209 (348)
Q Consensus       199 vCR~~~~~~d~  209 (348)
                      +||.++...|+
T Consensus        63 ~Cr~p~~~~~l   73 (86)
T d1rmda2          63 SCRYPCFPTDL   73 (86)
T ss_dssp             TTCCBCCGGGC
T ss_pred             ccCCCCChhhc
Confidence            99999977654

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.07  E-value=1.8e-11  Score=85.65  Aligned_cols=50  Identities=12%  Similarity=0.263  Sum_probs=40.8

Q ss_pred             CCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCCCCC
Q 018975          120 DCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGTCPV  199 (348)
Q Consensus       120 ~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CPv  199 (348)
                      .|+||+..|.+        |.. ...|+|.||..||.+|+.                                .+..||+
T Consensus         2 ~C~Ic~~~~~~--------Pv~-~~~cGh~fc~~cI~~~l~--------------------------------~~~~CP~   40 (56)
T d2baya1           2 LCAISGKVPRR--------PVL-SPKSRTIFEKSLLEQYVK--------------------------------DTGNDPI   40 (56)
T ss_dssp             CCTTTCSCCSS--------EEE-ETTTTEEEEHHHHHHHHH--------------------------------HHSBCTT
T ss_pred             CCccCCchHHh--------cCc-cCCCCCcccHHHHHHHHh--------------------------------hccCCCc
Confidence            69999999864        443 257999999999999986                                3357999


Q ss_pred             CCcccCccchH
Q 018975          200 CRKVFHVKDLE  210 (348)
Q Consensus       200 CR~~~~~~d~~  210 (348)
                      ||+++..+||.
T Consensus        41 c~~~l~~~dLi   51 (56)
T d2baya1          41 TNEPLSIEEIV   51 (56)
T ss_dssp             TCCBCCGGGCE
T ss_pred             cCCcCCHHhce
Confidence            99999888763

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=3.8e-10  Score=87.43  Aligned_cols=32  Identities=31%  Similarity=0.541  Sum_probs=26.9

Q ss_pred             CCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHH
Q 018975          119 GDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWW  159 (348)
Q Consensus       119 ~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~  159 (348)
                      ..|+||+..|..        |++ +++|+|.||..||.+|+
T Consensus        23 l~C~IC~~~~~~--------pv~-~~~CgH~fC~~Ci~~~~   54 (97)
T d1jm7b_          23 LRCSRCTNILRE--------PVC-LGGCEHIFCSNCVSDCI   54 (97)
T ss_dssp             TSCSSSCSCCSS--------CBC-CCSSSCCBCTTTGGGGT
T ss_pred             CCCccCCchhhc--------Cce-eCCCCCchhHHHHHHHH
Confidence            589999999964        444 36899999999999995

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=3.4e-10  Score=78.93  Aligned_cols=31  Identities=26%  Similarity=0.453  Sum_probs=24.8

Q ss_pred             CCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHH
Q 018975          118 DGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRW  158 (348)
Q Consensus       118 ~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w  158 (348)
                      ...|+||++.|.+        |.  .++|+|.||..||.+|
T Consensus         6 ~l~C~IC~~~~~~--------p~--~lpCgH~fC~~Ci~~~   36 (56)
T d1bora_           6 FLRCQQCQAEAKC--------PK--LLPCLHTLCSGCLEAS   36 (56)
T ss_dssp             CSSCSSSCSSCBC--------CS--CSTTSCCSBTTTCSSS
T ss_pred             CCCCcccCcccCC--------CE--EecCCCHHhHHHHHcC
Confidence            4589999999864        33  3899999999998554

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.83  E-value=1.3e-09  Score=76.92  Aligned_cols=55  Identities=16%  Similarity=0.335  Sum_probs=38.0

Q ss_pred             CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975          117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT  196 (348)
Q Consensus       117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (348)
                      ....|+||+..+.....    .|- ....|.|+||..||.+|+...                              ....
T Consensus         5 d~~~C~IC~~~~~~~~~----~~c-~c~~c~h~~H~~Cl~~W~~~~------------------------------~~~~   49 (60)
T d1vyxa_           5 DVPVCWICNEELGNERF----RAC-GCTGELENVHRSCLSTWLTIS------------------------------RNTA   49 (60)
T ss_dssp             SCCEETTTTEECSCCCC----CSC-CCSSGGGSCCHHHHHHHHHHH------------------------------TCSB
T ss_pred             CCCCCccCCccCCCcee----Eec-ccCCCCCEEcHHHHHHHHhhC------------------------------CCCC
Confidence            35689999998753221    121 124567999999999998621                              2357


Q ss_pred             CCCCCcccCc
Q 018975          197 CPVCRKVFHV  206 (348)
Q Consensus       197 CPvCR~~~~~  206 (348)
                      ||+||.++..
T Consensus        50 CP~Cr~~~~~   59 (60)
T d1vyxa_          50 CQICGVVYNT   59 (60)
T ss_dssp             CTTTCCBCCC
T ss_pred             CcccCCeeec
Confidence            9999998854

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.82  E-value=4.9e-10  Score=83.69  Aligned_cols=52  Identities=12%  Similarity=0.004  Sum_probs=41.8

Q ss_pred             CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975          117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT  196 (348)
Q Consensus       117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (348)
                      +...||||+..|.+        |.+  ++|+|.|+..||.+|++                               .....
T Consensus         6 ~~l~CpIc~~l~~d--------Pv~--~~cGhtfc~~ci~~~l~-------------------------------~~~~~   44 (80)
T d2c2la2           6 DYLCGKISFELMRE--------PCI--TPSGITYDRKDIEEHLQ-------------------------------RVGHF   44 (80)
T ss_dssp             STTBCTTTCSBCSS--------EEE--CSSCCEEETTHHHHHHH-------------------------------HTCSS
T ss_pred             ccccCcCcCchhhh--------hcc--cCCcCeecHHHHHHHHh-------------------------------cCCcc
Confidence            34689999999965        644  89999999999999986                               23457


Q ss_pred             CCCCCcccCccch
Q 018975          197 CPVCRKVFHVKDL  209 (348)
Q Consensus       197 CPvCR~~~~~~d~  209 (348)
                      ||+||.++...++
T Consensus        45 cP~c~~~l~~~~l   57 (80)
T d2c2la2          45 NPVTRSPLTQEQL   57 (80)
T ss_dssp             CTTTCCCCCGGGC
T ss_pred             CCCcccccccccc
Confidence            9999999976543

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.76  E-value=1.6e-09  Score=80.42  Aligned_cols=52  Identities=21%  Similarity=0.449  Sum_probs=42.0

Q ss_pred             CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCCC
Q 018975          117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMGT  196 (348)
Q Consensus       117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (348)
                      .+..|+||+..|.+        |.+  ++|+|.|+..||.+|++                               .....
T Consensus         7 ~~l~CpIc~~~m~d--------PV~--~~cgh~fc~~ci~~~~~-------------------------------~~~~~   45 (78)
T d1t1ha_           7 EYFRCPISLELMKD--------PVI--VSTGQTYERSSIQKWLD-------------------------------AGHKT   45 (78)
T ss_dssp             SSSSCTTTSCCCSS--------EEE--ETTTEEEEHHHHHHHHT-------------------------------TTCCB
T ss_pred             ccCCCcCcCchhhC--------ceE--ccCCCcchHHHHHHHHH-------------------------------HCCCC
Confidence            35789999999965        554  79999999999999985                               23457


Q ss_pred             CCCCCcccCccch
Q 018975          197 CPVCRKVFHVKDL  209 (348)
Q Consensus       197 CPvCR~~~~~~d~  209 (348)
                      ||+||.++...++
T Consensus        46 cP~~~~~l~~~~l   58 (78)
T d1t1ha_          46 CPKSQETLLHAGL   58 (78)
T ss_dssp             CTTTCCBCSSCCC
T ss_pred             CCcccccCCcccc
Confidence            9999999976543

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=1.8e-08  Score=77.95  Aligned_cols=51  Identities=14%  Similarity=0.124  Sum_probs=40.0

Q ss_pred             CCCCCCccccccccCCCCccccCcccccCCC-CcccHHHHHHHHHHhhcCcccccccccCCCcccccccccCCCCCCCCC
Q 018975          117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCF-HCFHSECIVRWWNWLQNGIETDSCATVHPNTDMRNQKDMLGPIDGNMG  195 (348)
Q Consensus       117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~-H~FH~~Cl~~w~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (348)
                      ....||||+..|.+        |.+  ++|+ |.|+..||.+||.                                ...
T Consensus        21 ~~f~CPI~~~lm~d--------PV~--~~~~~~ty~r~~I~~~l~--------------------------------~~~   58 (98)
T d1wgma_          21 DEFLDPIMSTLMCD--------PVV--LPSSRVTVDRSTIARHLL--------------------------------SDQ   58 (98)
T ss_dssp             TTTBCTTTCSBCSS--------EEE--CTTTCCEEEHHHHHHHTT--------------------------------TSC
T ss_pred             HHhCCcCchhHHHH--------HHh--cccccchhhHHHHHHHHH--------------------------------hcC
Confidence            35789999999975        554  6665 5799999999974                                345


Q ss_pred             CCCCCCcccCccch
Q 018975          196 TCPVCRKVFHVKDL  209 (348)
Q Consensus       196 ~CPvCR~~~~~~d~  209 (348)
                      .||+||+++...+|
T Consensus        59 ~~P~~~~~l~~~~L   72 (98)
T d1wgma_          59 TDPFNRSPLTMDQI   72 (98)
T ss_dssp             BCTTTCSBCCTTTS
T ss_pred             Ccccccccccchhh
Confidence            79999999976543

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=6.1e-08  Score=73.97  Aligned_cols=38  Identities=18%  Similarity=0.454  Sum_probs=30.6

Q ss_pred             CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHHHHH
Q 018975          117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRWWNW  161 (348)
Q Consensus       117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w~~~  161 (348)
                      +...|+||++.+..++       ++.++.|+|.||..||..||+.
T Consensus         4 ~~~~C~IC~~~~~~~~-------~~~~~~C~H~fC~~Cl~~~~~~   41 (94)
T d1wima_           4 GSSGCKLCLGEYPVEQ-------MTTIAQCQCIFCTLCLKQYVEL   41 (94)
T ss_dssp             SBCCCSSSCCCCBGGG-------EEEETTTTEEEEHHHHHHHHHH
T ss_pred             CCCcCccCCCcccCCc-------eEEECCCCCEeCCcCHHHHHHH
Confidence            5679999999886543       2345689999999999999973

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

Probab=95.35  E-value=0.013  Score=46.93  Aligned_cols=70  Identities=20%  Similarity=0.185  Sum_probs=44.8

Q ss_pred             CCHHHHHHHHHHHHhhcCCCceeccCCC--CeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            1 MAEEEVAMELEAVQAVYGDECVVLDSYP--PHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         1 m~~Ee~~~ElEAL~sIY~dd~~v~~~~~--~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      ||.-.++.|+..|+.==+..+.+.....  ..+.+.|...  .+..=+.-.+.+.|.+|++||..||.|.+...
T Consensus         1 ~a~kRL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp--~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~   72 (147)
T d1z2ua1           1 MALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGP--PESPYQGGVFFLTIHFPTDYPFKPPKVAFTTR   72 (147)
T ss_dssp             HHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECC--TTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             CHHHHHHHHHHHHHhCCCCCeEEEECCCchhhhhheecCC--CCCCcCCCceEEEEecCcCCCCCCceEEEecC
Confidence            6667889999999764444444432222  2344444421  11122334688999999999999999998754

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.18  E-value=0.16  Score=38.72  Aligned_cols=67  Identities=12%  Similarity=0.074  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHhhcCCCceecc--C--CCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            4 EEVAMELEAVQAVYGDECVVLD--S--YPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         4 Ee~~~ElEAL~sIY~dd~~v~~--~--~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      -+++.|+..|+.==++.+.+..  .  .-..+.+.|....  +..=..-.+.+.|.||++||..||.|.+...
T Consensus         6 kRL~kEl~~l~~~~~~~~~~~~~~~~~~l~~w~~~i~Gp~--~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t~   76 (117)
T d2a7la1           6 KRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAP--GTLYEGEKFQLLFKFSSRYPFDSPQVMFTGE   76 (117)
T ss_dssp             HHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCT--TSTTTTCEEEEEEEECTTTTTSCCEEEEESS
T ss_pred             HHHHHHHHHHhhCCCCCeEEEEecCCCCceEEEEEEeCCC--CccccCCeeeEEEecCcccccCCCEEEEeCC
Confidence            4788899999763223333321  1  1124555555321  1111234578999999999999999987653

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

Probab=93.13  E-value=0.11  Score=39.21  Aligned_cols=64  Identities=13%  Similarity=0.074  Sum_probs=38.3

Q ss_pred             HHHHHHHHHhhcCCCceecc--CCCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccC
Q 018975            6 VAMELEAVQAVYGDECVVLD--SYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIE   71 (348)
Q Consensus         6 ~~~ElEAL~sIY~dd~~v~~--~~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~   71 (348)
                      ++.|+..|+.==++.+.+..  +....+.+.+....+  ..=..--+.+.|.+|++||..||.+.+..
T Consensus         3 l~kEl~~l~~~~~~g~~~~~~~~~~~~w~~~i~gp~~--tpy~gg~f~~~i~fp~~YP~~pP~v~F~t   68 (109)
T d2fo3a1           3 IQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLEN--TIYANEVYKLKIIFPDDYPLKPPIVYFLQ   68 (109)
T ss_dssp             HHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTT--STTTTCEEEEEEECCTTTTTSCCEEEECS
T ss_pred             HHHHHHHHHhCCCCCEEEEEcCCcccEEEEEEecCch--hhhcCCCceEEEEeccccCCCCCeEEEEe
Confidence            55677777653333333322  223456666663211  11122357899999999999999998754

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

Probab=93.06  E-value=0.1  Score=40.33  Aligned_cols=65  Identities=12%  Similarity=0.069  Sum_probs=44.7

Q ss_pred             HHHHHHHHHhhcCCCceec--cCC-CCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            6 VAMELEAVQAVYGDECVVL--DSY-PPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         6 ~~~ElEAL~sIY~dd~~v~--~~~-~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      ++-|+..|+.--++.+.+.  +.. ...+.+.|....  +..=+.-.+.+.|.||++||..+|.|.+...
T Consensus         4 L~kEl~~l~~~~~~gi~~~~~~~~dl~~w~~~i~Gp~--~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~   71 (125)
T d2awfa1           4 LRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPP--DTLYEGGVFKAHLTFPKDYPLRPPKMKFITE   71 (125)
T ss_dssp             HHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCT--TSTTTTCEEEEEEECCTTTTSSCCEEEECSC
T ss_pred             HHHHHHHHHhCCCCCEEEEeCCCCCceEEEEEEeCCC--CcccCCCeeEEEEecCCCcCCCCCeEEecCC
Confidence            5778999988777776553  222 346767776321  1111234588999999999999999988765

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

Probab=92.38  E-value=0.14  Score=40.82  Aligned_cols=68  Identities=7%  Similarity=0.067  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHhhcCCCceeccCCC--CeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            3 EEEVAMELEAVQAVYGDECVVLDSYP--PHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         3 ~Ee~~~ElEAL~sIY~dd~~v~~~~~--~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      .-.++.|+..|..=-+..+.+.....  ..+.+.|....  +..-..-.+.+.|.||++||..+|.|.+...
T Consensus         5 ~kRl~~El~~l~~~~~~gi~~~p~~~n~~~w~~~i~gp~--~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~   74 (153)
T d1ayza_           5 RRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPA--DTPYEDGTFRLLLEFDEEYPNKPPHVKFLSE   74 (153)
T ss_dssp             HHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCT--TSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             HHHHHHHHHHHhHCCCCCEEEEECCCcHHhHhheeeCCC--CCccCCCEEEEEEecCccccCCCCeeeeccC
Confidence            34678888888765555554443222  23444554211  1122334588999999999999999998654

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

Probab=92.22  E-value=0.16  Score=40.82  Aligned_cols=67  Identities=9%  Similarity=0.123  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHhhcCCCceeccCCC--CeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            4 EEVAMELEAVQAVYGDECVVLDSYP--PHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         4 Ee~~~ElEAL~sIY~dd~~v~~~~~--~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      -.+..|+..|..--.+.+.+.....  ..+.+.|....+.  .=..-.+.+.|.||++||..+|.|.+...
T Consensus        12 kRl~kEl~~l~~~~~~gi~~~p~~~dl~~W~~~i~Gp~~t--~yegg~f~~~i~fp~~YP~~pP~v~f~t~   80 (156)
T d2e2ca_          12 KRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDT--VYESLKYKLTLEFPSDYPYKPPVVKFTTP   80 (156)
T ss_dssp             HHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTS--TTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             HHHHHHHHHHhHCCCCCEEEEECCCcccEEEEEEEcCCcc--ccCCCEEEEEEEecCCCCCCCceeecccc
Confidence            3688899999765445555443222  3666666532211  11233578999999999999999998644

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

Probab=92.07  E-value=0.18  Score=40.19  Aligned_cols=66  Identities=14%  Similarity=0.166  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHhhcCCCceeccC--CCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            5 EVAMELEAVQAVYGDECVVLDS--YPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         5 e~~~ElEAL~sIY~dd~~v~~~--~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      .++.|+..|..==++.+.+...  ....+.+.|....+  ..=..-.+.+.|.||++||..+|.|.+...
T Consensus         6 Rl~kE~~~l~~~~~~gi~~~p~~~~~~~w~~~I~Gp~~--TpY~gg~f~~~i~~p~~YP~~pP~v~f~t~   73 (154)
T d1yh2a1           6 RLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGAN--TPYEKGVFKLEVIIPERYPFEPPQIRFLTP   73 (154)
T ss_dssp             HHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTT--STTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             HHHHHHHHHHHCcCCCEEEEECCcchhhhhceEeCCCC--CCCCCCEEEEEEecCccccCCCceeeccCC
Confidence            5677888887644444544432  23355555553221  111234588999999999999999998665

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

Probab=91.85  E-value=0.12  Score=41.66  Aligned_cols=70  Identities=14%  Similarity=0.079  Sum_probs=44.7

Q ss_pred             CCHHHHHHHHHHHHhhcCCCceeccC-C------CCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            1 MAEEEVAMELEAVQAVYGDECVVLDS-Y------PPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         1 m~~Ee~~~ElEAL~sIY~dd~~v~~~-~------~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      |+...++.|+..|+.=-+..|.+... .      -..+.+.|.+..+.  .=..-.+.+.|.+|++||..+|.|.+...
T Consensus         2 ~a~~Rl~~E~~~~~~~~~~g~~~~p~~~~~~~~n~~~W~~~i~gp~gt--pY~gg~f~~~i~fp~~YP~~pP~v~f~t~   78 (156)
T d2uyza1           2 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGT--PWEGGLFKLRMLFKDDYPSSPPKCKFEPP   78 (156)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTS--TTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             hHHHHHHHHHHHHHHCCCCCeEEEecCCCCCCCcccEEEEEEEcCCCC--CccCCEEEEEEeCCccccCCCceeeeccc
Confidence            56778999999999555554443321 1      12344555533221  11223478999999999999999998654

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

Probab=91.70  E-value=0.2  Score=39.72  Aligned_cols=66  Identities=9%  Similarity=0.105  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHhhcCCCceeccCCC--CeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            5 EVAMELEAVQAVYGDECVVLDSYP--PHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         5 e~~~ElEAL~sIY~dd~~v~~~~~--~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      .++.|+..|..-=+..+.+.....  ..+.+.|.+..+  +.=..--+.+.|.||++||..+|.|.+...
T Consensus         5 Rl~~El~~l~~~~~~~i~~~~~~~d~~~w~~~i~gp~~--tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~   72 (146)
T d1i7ka_           5 RLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAG--TVYEDLRYKLSLEFPSGYPYNAPTVKFLTP   72 (146)
T ss_dssp             HHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTT--STTBTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             HHHHHHHHHhhCCCCCEEEEEcCCcccEEEEEEecCcc--ccccCCEEEEEEEecCCCCcCCceeeecCC
Confidence            577888888654333344332222  244455543221  111223578999999999999999998665

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

Probab=91.47  E-value=0.19  Score=40.28  Aligned_cols=67  Identities=9%  Similarity=0.015  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHhhcCCCceeccCCC--CeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            4 EEVAMELEAVQAVYGDECVVLDSYP--PHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         4 Ee~~~ElEAL~sIY~dd~~v~~~~~--~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      -++..|+..|+.=-...+.+.....  ..+.+.|....  +..=+.-.+.+.|.||.+||..||.|.+...
T Consensus         4 kRl~kE~~~l~~~p~~g~~~~p~~~n~~~w~~~i~Gp~--~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~   72 (157)
T d2f4wa1           4 QRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPE--MTPYEGGYYHGKLIFPREFPFKPPSIYMITP   72 (157)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCT--TSTTTTCEEEEEEECCTTTTSSCCEEEECSC
T ss_pred             HHHHHHHHHHHhCCCCCEEEEEcCcccceeeeEEECCC--CccccCCEEEEEEeccCCcCCCCCEEEeeCC
Confidence            4677788888653333343332222  24555555211  1111234589999999999999999987654

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

Probab=91.40  E-value=0.21  Score=39.64  Aligned_cols=67  Identities=10%  Similarity=0.113  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHhhcCCCceeccCCC--CeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            4 EEVAMELEAVQAVYGDECVVLDSYP--PHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         4 Ee~~~ElEAL~sIY~dd~~v~~~~~--~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      -.+..|+..|+.==++.+.+.....  ..+.+.|....+  ..-..--+.+.|.+|++||..+|.|.+...
T Consensus         6 rRl~~E~~~l~~~~~~gi~~~p~~~n~~~w~~~i~gp~~--tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~   74 (149)
T d1z3da1           6 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQE--TPFEDGTFKLSLEFTEEYPNKPPTVKFISK   74 (149)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTT--STTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             HHHHHHHHHHhhCCCCCEEEEECCCchhhhceeEECCCC--ccccCCEEEEEEEecCcCCCCCcEEEecCc
Confidence            3577888888753333444332222  244455542211  111223478999999999999999998765

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

Probab=91.08  E-value=0.24  Score=39.26  Aligned_cols=65  Identities=11%  Similarity=0.099  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHhhcCCCceeccC--CCCeeEEEEec-CCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            5 EVAMELEAVQAVYGDECVVLDS--YPPHLHLRIKP-RTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         5 e~~~ElEAL~sIY~dd~~v~~~--~~~~~~i~i~p-~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      .+.-|+..|..=-.+.+.+...  ....+.+.|.. ...   .=..-.+.+.|.||++||..+|.|.+...
T Consensus         6 Rl~kEl~~l~~~~~~gi~~~p~~~n~~~w~~~i~gp~~t---py~gg~f~~~i~fp~~YP~~pP~v~f~t~   73 (149)
T d1j7db_           6 RIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDS---PFEGGTFKLELFLPEEYPMAAPKVRFMTK   73 (149)
T ss_dssp             HHHHHHHHHTTSCCTTEEEEECSSCTTEEEEEEECCTTS---TTTTCEEEEEEECCTTTTTSCCEEEECSC
T ss_pred             HHHHHHHHHHhCCCCCEEEEECCCcccEeeeEEECCccc---ccCCCEEEEEEecCCcccCCCceeeecCC
Confidence            5677888886543444444432  23456666653 221   11223478999999999999999998765

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

Probab=90.97  E-value=0.26  Score=39.26  Aligned_cols=65  Identities=9%  Similarity=0.083  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHhhcCCCceeccCCC--CeeEEEEec-CCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            5 EVAMELEAVQAVYGDECVVLDSYP--PHLHLRIKP-RTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         5 e~~~ElEAL~sIY~dd~~v~~~~~--~~~~i~i~p-~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      .+..|+..|+.==...+.+.....  ..+.+.|.. ..+   .=..-.+.+.|.||.+||..+|.|.+...
T Consensus         7 Rl~~E~~~l~~~~~~g~~~~p~~~n~~~w~~~i~gp~~t---~y~gg~f~~~i~fp~~YP~~pP~v~F~t~   74 (152)
T d1jata_           7 RIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQS---PYEDGIFELELYLPDDYPMEAPKVRFLTK   74 (152)
T ss_dssp             HHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTS---TTTTEEEEEEEECCTTTTTSCCEEEECSC
T ss_pred             HHHHHHHHHHhCCCCCEEEEEcCCccchhheeeeCCchh---hhcCCEEEEEEecCccCCCCCcEEEecCC
Confidence            577888888764444444443222  245555552 221   11234588999999999999999988654

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

Probab=90.43  E-value=0.3  Score=38.83  Aligned_cols=66  Identities=15%  Similarity=0.120  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHhhcCCCceeccC--CCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            5 EVAMELEAVQAVYGDECVVLDS--YPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         5 e~~~ElEAL~sIY~dd~~v~~~--~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      .+..|+..|..==.+.+.+...  ....+.+.|....+.  .=..--+.+.|.||++||..+|.|.+...
T Consensus        10 Rl~kEl~~l~~~~~~gi~v~p~~~dl~~w~~~i~gp~~t--py~gg~f~~~i~fp~~YP~~pP~v~f~t~   77 (151)
T d1zdna1          10 LVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGT--PYAGGLFRMKLLLGKDFPASPPKGYFLTK   77 (151)
T ss_dssp             HHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTS--TTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             HHHHHHHHHHhCCCCCeEEEEcCcchheeEEEEecCCCc--CccCCceeeeeecCCCCCCCCceeecCCC
Confidence            5677888886533333444422  234566666632221  11223578999999999999999987654

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

Probab=90.41  E-value=0.32  Score=38.61  Aligned_cols=66  Identities=12%  Similarity=0.042  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHhhcCCCceeccC--CCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            5 EVAMELEAVQAVYGDECVVLDS--YPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         5 e~~~ElEAL~sIY~dd~~v~~~--~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      .++.|+..|..-=+..+.+...  ....+.+.|....+  ..=+.-.+.+.|.||++||..+|.|.+...
T Consensus         8 ~L~kE~~~l~~~~~~gi~v~p~~~n~~~W~~~i~Gp~~--t~yegg~f~~~i~fp~~YP~~pP~v~f~t~   75 (148)
T d1yrva1           8 LLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQN--SVWQGLVFQLTIHFTSEYNYAPPVVKFITI   75 (148)
T ss_dssp             HHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTT--STTTTCEEEEEEECCTTBTTBCCEEEESSC
T ss_pred             HHHHHHHHHHHCCCCCEEEEECCCcccEEEEEEEeCCC--CccCCCceEEEEEeccccccCCceeeeccc
Confidence            4677888885443444544422  22356666663211  111233578999999999999999987653

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.32  E-value=0.28  Score=39.11  Aligned_cols=68  Identities=18%  Similarity=0.214  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHh---hcCCCceec--cCCCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCCC
Q 018975            4 EEVAMELEAVQA---VYGDECVVL--DSYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIESK   73 (348)
Q Consensus         4 Ee~~~ElEAL~s---IY~dd~~v~--~~~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~~   73 (348)
                      -.+..|+.-|..   .....+.+.  +.....+.+.|....  ++.=..-.+.+.|.||++||..||.|.+....
T Consensus         7 ~Rl~kE~~~l~~~~~~~~~~i~~~~~~~n~~~w~~~i~gp~--~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i   79 (154)
T d2bepa1           7 QRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPP--DTPYEGGRYQLEIKIPETYPFNPPKVRFITKI   79 (154)
T ss_dssp             HHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCT--TSTTTTCEEEEEEECCTTTTSSCCEEEESSCC
T ss_pred             HHHHHHHHHHHHCCCCCCCcEEEEcCCCChhheEeeEecCc--cccccCCeeEEEEeccccccCCCCcceecccC
Confidence            356677766643   222333322  222335566565321  11112334789999999999999999987653

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

Probab=90.18  E-value=0.36  Score=38.09  Aligned_cols=67  Identities=18%  Similarity=0.169  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHhhcCCCceeccC--CCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            4 EEVAMELEAVQAVYGDECVVLDS--YPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         4 Ee~~~ElEAL~sIY~dd~~v~~~--~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      -.++.|+..|+.==++.+.+...  ....+.+.|....  +..=+.-.+.+.|.+|++||..||.|.+...
T Consensus         5 kRi~~E~~~l~~~~~~gi~~~~~~~n~~~w~~~i~gp~--~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~   73 (148)
T d1y6la_           5 KRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPP--GSVYEGGVFFLDITFSPDYPFKPPKVTFRTR   73 (148)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCT--TSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             HHHHHHHHHHhhCCCCCEEEEECCcccceeceEEECCC--CCCcCCCeEEEEEecCcccCCCCcEEEEeCC
Confidence            35777888886533333443322  2234445444211  1111234578999999999999999987653

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

Probab=90.07  E-value=0.29  Score=38.79  Aligned_cols=67  Identities=22%  Similarity=0.239  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHhhcCCCceecc--CCC-CeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            3 EEEVAMELEAVQAVYGDECVVLD--SYP-PHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         3 ~Ee~~~ElEAL~sIY~dd~~v~~--~~~-~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      .-+++.|+..|+.-=+..+.+..  +.. ..+.+.+.|..   ..=..-.+.+.|.||++||..+|.|.+...
T Consensus         2 ~~Rl~kE~~~l~~~~p~gi~~~~~~~~~~~~w~~iigp~~---tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~   71 (150)
T d1wzva1           2 SMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQ---PPYHLKAFNLRISFPPEYPFKPPMIKFTTK   71 (150)
T ss_dssp             HHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEECCCS---TTGGGEEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEecCCCceEEEEEEECCCC---CCccCceeeEEEecCcCCccCCceeeccCC
Confidence            45688899999764444433322  112 23444444432   122334588999999999999999998765

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

Probab=89.66  E-value=0.36  Score=38.10  Aligned_cols=66  Identities=17%  Similarity=0.206  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHhhcCCCceec--cC-CCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            5 EVAMELEAVQAVYGDECVVL--DS-YPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         5 e~~~ElEAL~sIY~dd~~v~--~~-~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      .++.|+..|..-=+..+.+.  .. ....+.+.|....+  ..=+.-.+.+.|.||++||..+|.|.+...
T Consensus         5 RL~~El~~l~~~~~~gi~~~~~~~~~~~~w~~~I~gp~~--t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~   73 (149)
T d1fzya_           5 RIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPG--TPYEGGKFVVDIEVPMEYPFKPPKMQFDTK   73 (149)
T ss_dssp             HHHHHHHHHHTCGGGCEEEEESCSSCSSEEEEEEECCTT--STTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             HHHHHHHHHHHCCCCCEEEEECCCCchhEEEEEEEcCCC--CCCCCCceeEEEEecCCcccCCcEEEecCC
Confidence            57788888876544455553  21 23456666653211  111234578999999999999999988553

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

Probab=89.51  E-value=0.38  Score=38.64  Aligned_cols=68  Identities=15%  Similarity=0.065  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHhhcCCCceecc-C--CCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            3 EEEVAMELEAVQAVYGDECVVLD-S--YPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         3 ~Ee~~~ElEAL~sIY~dd~~v~~-~--~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      .-.++.|+..|..==...+.+.. .  ....+.+.|....+  ..=..-.+.+.|.+|++||..||.|.+...
T Consensus         5 ~kRL~~E~~~l~~~~~~gi~~~p~~e~nl~~w~~~I~Gp~~--tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~   75 (164)
T d2ucza_           5 QKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPD--TPYADGVFNAKLEFPKDYPLSPPKLTFTPS   75 (164)
T ss_dssp             HHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTT--STTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             HHHHHHHHHHHhhCCCCCEEEEECCccchhhhheeeeCCCc--ccccCCeeEEEEecCCCCCCCCCeEEeecC
Confidence            34688899888763233343342 1  22356666663211  111234588999999999999999987544

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

Probab=89.42  E-value=0.57  Score=36.70  Aligned_cols=66  Identities=26%  Similarity=0.270  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHhhcCCCceec---cC---CCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            5 EVAMELEAVQAVYGDECVVL---DS---YPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         5 e~~~ElEAL~sIY~dd~~v~---~~---~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      ++..|++.|+.=-++++...   ..   .-.++.+.|....  +..=..-.+.+.|.||++||..+|.|.+...
T Consensus         9 RL~kEl~~l~k~~~~~~~~~~~~~~~d~nl~~W~~~I~Gp~--~TpYegg~f~~~i~fp~~YP~~pP~v~F~t~   80 (139)
T d2a4da1           9 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPP--RTIYENRIYSLKIECGPKYPEAPPFVRFVTK   80 (139)
T ss_dssp             HHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCT--TSTTTTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred             HHHHHHHHHhhCCCCCceeeeccCCCcccccEEEEEEECCC--CCchhcCEEEEEEECCCCCCCCCCEEEEecC
Confidence            57789998886333332222   11   1235566666221  1112234578999999999999999987653

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

Probab=89.00  E-value=0.16  Score=40.83  Aligned_cols=66  Identities=14%  Similarity=0.191  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHhhcCCCceecc-CCCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            4 EEVAMELEAVQAVYGDECVVLD-SYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         4 Ee~~~ElEAL~sIY~dd~~v~~-~~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      -.++.|+..|...-+-.+.+.. +.-..+.+.+.|..+-   =..-.+.+.|.||++||..+|.|.+...
T Consensus         6 ~Rl~kEl~~l~~~~~~~i~~~~~~~l~~w~~~i~p~~t~---Y~gg~f~~~i~fp~~YP~~pP~V~f~t~   72 (157)
T d1y8xa1           6 LRIQKDINELNLPKTCDISFSDPDDLLNFKLVICPDEGF---YKSGKFVFSFKVGQGYPHDPPKVKCETM   72 (157)
T ss_dssp             HHHHHHHHTCCCCTTEEEECSSTTCTTEEEEEECCSSST---TTTBCEEEEEECCTTTTTSCCEEEECSC
T ss_pred             HHHHHHHHHhCCCCCCcEEEcCCCcceEEEEEECCCCCC---cCCCeEEEEEEecCCCCCCCceeeeccc
Confidence            4677888877643222222222 1224666767664321   1223488999999999999999998654

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

Probab=87.37  E-value=0.5  Score=37.79  Aligned_cols=65  Identities=12%  Similarity=0.052  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHhhcCCCceecc--CC-CCeeEEEEec-CCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            5 EVAMELEAVQAVYGDECVVLD--SY-PPHLHLRIKP-RTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         5 e~~~ElEAL~sIY~dd~~v~~--~~-~~~~~i~i~p-~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      .++.|+..|..-=++.+.+..  .. ...+.+.|.. ...   .=..-.+.+.|.||++||..||.|.+...
T Consensus         4 ~L~kE~~~l~~~~~~g~~v~~~~~~dl~~W~~~i~gp~~t---pY~gg~f~~~i~fp~~YP~~pP~v~f~t~   72 (161)
T d1pzva_           4 LLKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDT---LYEGGFFKAILDFPRDYPQKPPKMKFISE   72 (161)
T ss_dssp             HHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTS---SCSSCEEEEEEECCTTGGGSCCEEEECSC
T ss_pred             HHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCcch---hhcCCEEEEEEeCCCCCCCCCCeEEecCC
Confidence            467788888876666666542  22 3456666653 221   11223588999999999999999988654

>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: variant PHD-like domain
domain: Hypothetical protein KIAA1045
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.35  E-value=1  Score=32.03  Aligned_cols=35  Identities=26%  Similarity=0.520  Sum_probs=25.0

Q ss_pred             CCCCCCCccccccccCCCCccccCcccccCCCCcccHHHHHHH
Q 018975          116 HPDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVRW  158 (348)
Q Consensus       116 ~~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~w  158 (348)
                      ..+..|.|| ..|..+..      | -+--|.-+||..||.|-
T Consensus        13 ~~D~mC~vC-~v~t~~~l------~-pCRvCtRv~H~~CL~r~   47 (89)
T d1wila_          13 VNDEMCDVC-EVWTAESL------F-PCRVCTRVFHDGCLRRM   47 (89)
T ss_dssp             CCSCCCTTT-CCCCSSCC------S-SCSSSSSCCCHHHHHHH
T ss_pred             CcCcccccc-Ccccccce------e-cceeecchhhHHHHHHh
Confidence            346789999 77765443      1 13467899999999884

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

Probab=84.57  E-value=1.5  Score=34.03  Aligned_cols=66  Identities=24%  Similarity=0.365  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHhhcCCCce---eccCC---CCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            5 EVAMELEAVQAVYGDECV---VLDSY---PPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         5 e~~~ElEAL~sIY~dd~~---v~~~~---~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      ++..|++.++-=.+.+..   +....   -..+.+.|....  ++.=..-.+.+.|.||++||..+|.|.+...
T Consensus         8 RL~kEl~~~~k~~~~~~~~~~~~~~dd~~l~~W~~~i~Gp~--~tpy~gg~f~~~i~fp~~YP~~PP~v~f~t~   79 (136)
T d1jatb_           8 RLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPP--HSNHENRIYSLSIDCGPNYPDSPPKVTFISK   79 (136)
T ss_dssp             HHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCS--SSTTTTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred             HHHHHHHHHhccCCCCcEEEeecCCCCCceeEEEEEEECCC--CChhhcCEEEEEEEecCCCCCCCCEEEEecc
Confidence            466787777654333311   12221   224555554221  1111234578999999999999999988653

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

Probab=83.97  E-value=0.66  Score=36.28  Aligned_cols=64  Identities=19%  Similarity=0.175  Sum_probs=37.3

Q ss_pred             HHHHHHHHHhhcCCCceeccC---CCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccCC
Q 018975            6 VAMELEAVQAVYGDECVVLDS---YPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIES   72 (348)
Q Consensus         6 ~~~ElEAL~sIY~dd~~v~~~---~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~~   72 (348)
                      +..|+.-|+.=-.+.+.++..   ....+.+.|.|..+-   =..-.+.+.|.||++||..||.|.+...
T Consensus         4 l~kEl~~l~~~~~~~~~~~~~~~~n~~~w~~~igp~~tp---Y~gg~f~~~i~fp~~YP~~pP~v~f~t~   70 (144)
T d1c4zd_           4 LMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPP---YDKGAFRIEINFPAEYPFKPPKITFKTK   70 (144)
T ss_dssp             HHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEECCCSSS---CCSCCEEEEEECCTTTTTSCCEEEESSC
T ss_pred             HHHHHHHHHhCCCCCeEEEECCCCcceEEEEEECCCCcC---ccCCEEEEEEEecCcccCCCceeeccCC
Confidence            455666554432333333321   123555656554321   1122478999999999999999988654

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

Probab=82.95  E-value=1.2  Score=35.35  Aligned_cols=41  Identities=12%  Similarity=0.216  Sum_probs=28.1

Q ss_pred             CeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCcccccC
Q 018975           29 PHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLIE   71 (348)
Q Consensus        29 ~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~~   71 (348)
                      ..+.+.+....  +..=..-.+.+.|.||++||..+|.|.+..
T Consensus        26 ~~w~v~i~Gp~--~TpY~gg~f~~~i~fp~~YP~~pP~v~F~t   66 (158)
T d1yf9a1          26 AEFWVEFKGPE--GTPYEDGTWMLHVQLPSDYPFKSPSIGFCN   66 (158)
T ss_dssp             TEEEEEEECCT--TSTTTTCEEEEEEECCTTTTTSCCEEEESS
T ss_pred             eEEEEEEECCC--CCCccCcEEEEEEECcccchhhceeEEecC
Confidence            35666666321  111123457899999999999999998765

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.16  E-value=0.23  Score=31.88  Aligned_cols=31  Identities=19%  Similarity=0.489  Sum_probs=21.0

Q ss_pred             CCCccccccccCCCCccccCcccccCCCCcccHHHHHH
Q 018975          120 DCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIVR  157 (348)
Q Consensus       120 ~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~~  157 (348)
                      .|.||-..-   +..    .++..-.|...||..|+..
T Consensus         2 ~C~vC~~~~---~~~----~~i~Cd~C~~~~H~~C~~p   32 (51)
T d1f62a_           2 RCKVCRKKG---EDD----KLILCDECNKAFHLFCLRP   32 (51)
T ss_dssp             CCTTTCCSS---CCS----CCEECTTTCCEECHHHHCT
T ss_pred             CCcCcCCCC---CCC----CEEEcCCCCCCCCCCCCCC
Confidence            588886542   111    1445678999999999865

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.04  E-value=1.5  Score=34.12  Aligned_cols=67  Identities=13%  Similarity=0.041  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHhhcCCC---ceecc--CCCCeeEEEEecCCCCCCCCcceEEEEEEEcCCCCCCCCCccccc
Q 018975            4 EEVAMELEAVQAVYGDE---CVVLD--SYPPHLHLRIKPRTADVSSQQFVEAVIGIRASPKYPEHPPRIDLI   70 (348)
Q Consensus         4 Ee~~~ElEAL~sIY~dd---~~v~~--~~~~~~~i~i~p~~~~~~~~~~v~i~L~i~lp~~YP~~~P~i~i~   70 (348)
                      +....|+..+.+.|.+=   +.++.  +......+.+.....-.-....-.+.|.|.||.+||..||.+++.
T Consensus        17 ~~~~~d~~~~l~~~~~l~p~~~~f~~~dg~~~~ll~l~G~~~~~y~g~~y~~pi~i~~p~~YP~~pP~v~~~   88 (141)
T d1s1qa_          17 DLTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVK   88 (141)
T ss_dssp             HHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEECTTTTSSCCEEEEC
T ss_pred             hhHHHHHHHHHHhCCCCCCccceEEeCCCCceEEEEEECCCCcccCCCEEEEEEEEECCccCCCCCCEEEEe
Confidence            45677889999999751   11121  111233344432110000001234667888999999999999774

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.02  E-value=0.37  Score=32.41  Aligned_cols=34  Identities=21%  Similarity=0.475  Sum_probs=24.7

Q ss_pred             CCCCCCccccccccCCCCccccCcccccCCCCcccHHHHH
Q 018975          117 PDGDCPLCLYPLFRKDKNVEVLPFMKLMSCFHCFHSECIV  156 (348)
Q Consensus       117 ~~~~C~ICl~~f~~~~~~~~~~p~~k~~~C~H~FH~~Cl~  156 (348)
                      ....|.||......++.      ++..-.|...||..|+.
T Consensus         5 ~~~~C~~C~~~~~~~~~------~I~Cd~C~~w~H~~C~~   38 (64)
T d1we9a_           5 SSGQCGACGESYAADEF------WICCDLCEMWFHGKCVK   38 (64)
T ss_dssp             SCCCCSSSCCCCCSSSC------EEECSSSCCEEETTTTT
T ss_pred             CCCcCcCcCCCCCCCCC------EEEcCCCCccCCcccCC
Confidence            46799999876543321      34567899999999973