Citrus Sinensis ID: 018979

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35
MMMKLGPSSYRDRTQEFLSVVERLKKSVASANNAPSSSGSSNSSRAVTKPEDRKFAVAIQSEFNKRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPTFEIQELTAVIKQDITALNSAVVDLQLLCNSQNESGNISSDTTSHSTTVVDNLKNRLMGTTKEFKEVLTMRTENLKVHENRRQLFSSNASKESTNPFVRQRPLATRLDGGASTASPPPWANGSASSSRLFPSKQADGESLPLLQQQQGQQQQQMVPLQDSYMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRYLNSISSNRWLMLKIFFVLVVFLMIFLFFVA
cccccccccccccHHHHHHHHHHHHHcHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHcccHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
cccccccccHHccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHc
mmmklgpssyrdrTQEFLSVVERLKKSVasannapsssgssnssravtkpedRKFAVAIQSEFNKRaskigygihQTSQKLAKLAKLAKrtsvfddptfEIQELTAVIKQDITALNSAVVDLQLLCnsqnesgnissdttshstTVVDNLKNRLMGTTKEFKEVLTMRTENLKVHENRRQlfssnaskestnpfvrqrplatrldggastaspppwangsasssrlfpskqadgeslpllqqqqgqqqqqmvplqdsyMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRYLNSISSNRWLMLKIFFVLVVFLMIFLFFVA
mmmklgpssyrdrTQEFLSVVERLKKSVasannapsssgssnssravtkpeDRKFAVAIQSEFNKRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPTFEIQELTAVIKQDITALNSAVVDLQLLCNSQnesgnissdttshsttvvdnlknrlmgttKEFKEVLTMRTenlkvhenrrqlfssnaskestnpfvRQRPLATRLDGGASTASPPPWANGSASSSRLFPSKQADGESLPLLQQQQGQQQQQMVPLQDSYMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRYLNSISSNRWLMLKIFFVLVVFLMIFLFFVA
MMMKLGPSSYRDRTQEFLSVVERLKKsvasannapsssgssnssRAVTKPEDRKFAVAIQSEFNKRASKIGYGIHQTSQklaklaklakRTSVFDDPTFEIQELTAVIKQDITALNSAVVDLQLLCNSQNESGNIssdttshsttvvdNLKNRLMGTTKEFKEVLTMRTENLKVHENRRQLFSSNASKESTNPFVRQRPLATRLDGGASTASPPPWANGSASSSRLFPSKQADGESLPLLqqqqgqqqqqMVPLQDSYMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRYLNSISSNRWlmlkiffvlvvflmiflffvA
********************************************************VAIQ*EFNKRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPTFEIQELTAVIKQDITALNSAVVDLQLLCN******************************************************************************************************************************************LHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRYLNSISSNRWLMLKIFFVLVVFLMIFLFFV*
***********DRTQEFLSV*********************************************RASKIGYGIHQT***********************IQELTAVIKQDITALNSA****************************VDNLKNRL******************************************************************************************************************VESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRYLNSISSNRWLMLKIFFVLVVFLMIFLFFVA
***********DRTQEFLSVVERLKK************************EDRKFAVAIQSEFNKRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPTFEIQELTAVIKQDITALNSAVVDLQLLCNSQN*************TTVVDNLKNRLMGTTKEFKEVLTMRTENLKVHENRRQLFSSNASKESTNPFVRQRPLATR**********************LFPSKQADGESLP***************LQDSYMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRYLNSISSNRWLMLKIFFVLVVFLMIFLFFVA
***********DR*QEFLSVVERLKKS********************************QSEFNKRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPTFEIQELTAVIKQDITALNSAVVDLQLLCNSQ************HSTTVVDNLKNRLMGTTKEFKEVLTMRTENLKVHENRR***************************************************************QQGQQQQQMVPLQDSYMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRYLNSISSNRWLMLKIFFVLVVFLMIFLFFVA
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooo
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MMMKLGPSSYRDRTQEFLSVVERLKKSVASANNAPSSSGSSNSSRAVTKPEDRKFAVAIQSEFNKRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPTFEIQELTAVIKQDITALNSAVVDLQLLCNSQNESGNISSDTTSHSTTVVDNLKNRLMGTTKEFKEVLTMRTENLKVHENRRQLFSSNASKESTNPFVRQRPLATRLDGGASTASPPPWANGSASSSRLFPSKQADGESLPLLQQQQGQQQQQMVPLQDSYMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRYLNSISSNRWLMLKIFFVLVVFLMIFLFFVA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query348 2.2.26 [Sep-21-2011]
Q9LK09347 Syntaxin-32 OS=Arabidopsi yes no 0.971 0.974 0.703 1e-126
Q9FFK1336 Syntaxin-31 OS=Arabidopsi no no 0.925 0.958 0.475 6e-78
Q08DB5355 Syntaxin-5 OS=Bos taurus yes no 0.807 0.791 0.4 6e-47
O13644309 Integral membrane protein yes no 0.879 0.990 0.347 4e-46
Q08851355 Syntaxin-5 OS=Rattus norv yes no 0.810 0.794 0.385 6e-46
Q13190355 Syntaxin-5 OS=Homo sapien yes no 0.807 0.791 0.393 1e-45
Q8K1E0355 Syntaxin-5 OS=Mus musculu yes no 0.810 0.794 0.382 8e-45
Q24509467 Syntaxin-5 OS=Drosophila yes no 0.824 0.614 0.377 7e-43
Q20797413 Putative syntaxin-3 OS=Ca yes no 0.810 0.682 0.322 3e-39
Q01590340 Integral membrane protein yes no 0.732 0.75 0.335 9e-30
>sp|Q9LK09|SYP32_ARATH Syntaxin-32 OS=Arabidopsis thaliana GN=SYP32 PE=2 SV=1 Back     alignment and function desciption
 Score =  452 bits (1164), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 251/357 (70%), Positives = 288/357 (80%), Gaps = 19/357 (5%)

Query: 1   MMMKLGPSSYRDRTQEFLSVVERLKKSVA---SANNAPSSSGSSNSSRAVTKPEDRKFAV 57
           M  + G SSYRDR+ EF  +VE L++S+A   +ANN P  +  ++ +R     ED    +
Sbjct: 1   MSARHGQSSYRDRSDEFFKIVETLRRSIAPAPAANNVPYGNNRNDGARR----ED----L 52

Query: 58  AIQSEFNKRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPTFEIQELTAVIKQDITALNS 117
             +SEFNKRAS IG  I+QTSQKL+KLAKLAKRTSVFDDPT EIQELT VIKQ+I+ALNS
Sbjct: 53  INKSEFNKRASHIGLAINQTSQKLSKLAKLAKRTSVFDDPTQEIQELTVVIKQEISALNS 112

Query: 118 AVVDLQLLCNSQNESGNISSD--TTSHSTTVVDNLKNRLMGTTKEFKEVLTMRTENLKVH 175
           A+VDLQL  +SQN+ GN S D   ++HS TVVD+LK RLM TTKEFK+VLTMRTEN+KVH
Sbjct: 113 ALVDLQLFRSSQNDEGNNSRDRDKSTHSATVVDDLKYRLMDTTKEFKDVLTMRTENMKVH 172

Query: 176 ENRRQLFSSNASKESTNPFVRQRPLATRLDGGASTASPPPWANGSASSS-RLFPSKQADG 234
           E+RRQLFSSNASKESTNPFVRQRPLA +    AS + P PWANGS+SSS +L P K  +G
Sbjct: 173 ESRRQLFSSNASKESTNPFVRQRPLAAK--AAASESVPLPWANGSSSSSSQLVPWKPGEG 230

Query: 235 ESLPLLQQQQGQQQQQ---MVPLQDSYMHSRAEALHNVESTIHELGNIFTQLATMVSQQG 291
           ES PLLQQ Q QQQQQ   MVPLQD+YM  RAEALH VESTIHEL +IFTQLATMVSQQG
Sbjct: 231 ESSPLLQQSQQQQQQQQQQMVPLQDTYMQGRAEALHTVESTIHELSSIFTQLATMVSQQG 290

Query: 292 EIAIRIDENMDDTLANVEGAQSQLVRYLNSISSNRWLMLKIFFVLVVFLMIFLFFVA 348
           EIAIRID+NM+DTLANVEGAQSQL RYLNSISSNRWLM+KIFFVL+ FLMIFLFFVA
Sbjct: 291 EIAIRIDQNMEDTLANVEGAQSQLARYLNSISSNRWLMMKIFFVLIAFLMIFLFFVA 347
Vesicle trafficking protein that functions in the secretory pathway.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9FFK1|SYP31_ARATH Syntaxin-31 OS=Arabidopsis thaliana GN=SYP31 PE=1 SV=1 Back     alignment and function description
>sp|Q08DB5|STX5_BOVIN Syntaxin-5 OS=Bos taurus GN=STX5 PE=2 SV=1 Back     alignment and function description
>sp|O13644|SED5_SCHPO Integral membrane protein sed5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sed5 PE=3 SV=1 Back     alignment and function description
>sp|Q08851|STX5_RAT Syntaxin-5 OS=Rattus norvegicus GN=Stx5 PE=1 SV=2 Back     alignment and function description
>sp|Q13190|STX5_HUMAN Syntaxin-5 OS=Homo sapiens GN=STX5 PE=1 SV=2 Back     alignment and function description
>sp|Q8K1E0|STX5_MOUSE Syntaxin-5 OS=Mus musculus GN=Stx5 PE=1 SV=3 Back     alignment and function description
>sp|Q24509|STX5_DROME Syntaxin-5 OS=Drosophila melanogaster GN=Syx5 PE=2 SV=2 Back     alignment and function description
>sp|Q20797|STX3_CAEEL Putative syntaxin-3 OS=Caenorhabditis elegans GN=syn-3 PE=3 SV=1 Back     alignment and function description
>sp|Q01590|SED5_YEAST Integral membrane protein SED5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SED5 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query348
255549032346 syntaxin, putative [Ricinus communis] gi 0.977 0.982 0.845 1e-138
225445330338 PREDICTED: syntaxin-32 [Vitis vinifera] 0.968 0.997 0.796 1e-132
225430105340 PREDICTED: syntaxin-32 [Vitis vinifera] 0.936 0.958 0.779 1e-129
297831274342 hypothetical protein ARALYDRAFT_899015 [ 0.971 0.988 0.721 1e-126
388499590345 unknown [Lotus japonicus] 0.954 0.962 0.756 1e-125
115434878344 Os01g0179200 [Oryza sativa Japonica Grou 0.968 0.979 0.709 1e-125
30687459347 syntaxin-32 [Arabidopsis thaliana] gi|28 0.971 0.974 0.703 1e-125
357136358347 PREDICTED: syntaxin-32-like [Brachypodiu 0.959 0.962 0.679 1e-123
356515506339 PREDICTED: syntaxin-32-like [Glycine max 0.942 0.967 0.756 1e-123
297825669339 hypothetical protein ARALYDRAFT_481441 [ 0.954 0.979 0.704 1e-123
>gi|255549032|ref|XP_002515572.1| syntaxin, putative [Ricinus communis] gi|223545516|gb|EEF47021.1| syntaxin, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 290/343 (84%), Positives = 314/343 (91%), Gaps = 3/343 (0%)

Query: 6   GPSSYRDRTQEFLSVVERLKKSVASANNAPSSSGSSNSSRAVTKPEDRKFAVAIQSEFNK 65
           G SSYRDRTQEFLSVVERLKKS +SA    +++ S++SS +++KP+  + AVAIQSEFNK
Sbjct: 7   GKSSYRDRTQEFLSVVERLKKSFSSA--NNAAASSTSSSSSISKPDATRSAVAIQSEFNK 64

Query: 66  RASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPTFEIQELTAVIKQDITALNSAVVDLQLL 125
           RASKIG+GIHQTSQKL+KLAKLAKR+SVFDDPT EIQELTAVIKQDITALN+AVVDLQLL
Sbjct: 65  RASKIGFGIHQTSQKLSKLAKLAKRSSVFDDPTMEIQELTAVIKQDITALNAAVVDLQLL 124

Query: 126 CNSQNESGNISSDTTSHSTTVVDNLKNRLMGTTKEFKEVLTMRTENLKVHENRRQLFSSN 185
           CNSQNESGNISSDTT+HSTTVVDNLKNRLM  TKEFKEVLTMRTENLKVHENRRQLFSS 
Sbjct: 125 CNSQNESGNISSDTTTHSTTVVDNLKNRLMSATKEFKEVLTMRTENLKVHENRRQLFSST 184

Query: 186 ASKESTNPFVRQRPLATRLDGGASTASPPPWANGSASSSRLFPSKQADGESLPLLQQQQG 245
           ASK+STNPFVRQRPLA+R    AS A PPPWANGSASSS+LFPSKQ DGES   L QQQ 
Sbjct: 185 ASKDSTNPFVRQRPLASRSTANASPAPPPPWANGSASSSQLFPSKQTDGES-QPLLQQQR 243

Query: 246 QQQQQMVPLQDSYMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTL 305
           QQQQQMVPLQDSYM SRAEALHNVESTIHEL NIFTQLATMVSQQGE+AIRIDENMDDTL
Sbjct: 244 QQQQQMVPLQDSYMQSRAEALHNVESTIHELSNIFTQLATMVSQQGELAIRIDENMDDTL 303

Query: 306 ANVEGAQSQLVRYLNSISSNRWLMLKIFFVLVVFLMIFLFFVA 348
           +NVEGAQ+QLVRYLNSISSNRWLM+KIFFVL+VFLMIFLFFVA
Sbjct: 304 SNVEGAQNQLVRYLNSISSNRWLMIKIFFVLIVFLMIFLFFVA 346

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225445330|ref|XP_002284775.1| PREDICTED: syntaxin-32 [Vitis vinifera] gi|297738869|emb|CBI28114.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225430105|ref|XP_002284618.1| PREDICTED: syntaxin-32 [Vitis vinifera] gi|296081933|emb|CBI20938.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297831274|ref|XP_002883519.1| hypothetical protein ARALYDRAFT_899015 [Arabidopsis lyrata subsp. lyrata] gi|297329359|gb|EFH59778.1| hypothetical protein ARALYDRAFT_899015 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|388499590|gb|AFK37861.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|115434878|ref|NP_001042197.1| Os01g0179200 [Oryza sativa Japonica Group] gi|9711872|dbj|BAB07966.1| putative syntaxin of plants 31 [Oryza sativa Japonica Group] gi|15289779|dbj|BAB63479.1| putative syntaxin of plants 31 [Oryza sativa Japonica Group] gi|113531728|dbj|BAF04111.1| Os01g0179200 [Oryza sativa Japonica Group] gi|125524663|gb|EAY72777.1| hypothetical protein OsI_00640 [Oryza sativa Indica Group] gi|215741218|dbj|BAG97713.1| unnamed protein product [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|30687459|ref|NP_189078.2| syntaxin-32 [Arabidopsis thaliana] gi|28380163|sp|Q9LK09.1|SYP32_ARATH RecName: Full=Syntaxin-32; Short=AtSYP32 gi|11994697|dbj|BAB02935.1| probable t-SNARE (soluble NSF attachment protein receptor) SED5; ER to Golgi transport [Arabidopsis thaliana] gi|28393777|gb|AAO42298.1| putative syntaxin SYP32 [Arabidopsis thaliana] gi|30793955|gb|AAP40429.1| putative syntaxin SYP32 [Arabidopsis thaliana] gi|332643371|gb|AEE76892.1| syntaxin-32 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357136358|ref|XP_003569772.1| PREDICTED: syntaxin-32-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|356515506|ref|XP_003526441.1| PREDICTED: syntaxin-32-like [Glycine max] Back     alignment and taxonomy information
>gi|297825669|ref|XP_002880717.1| hypothetical protein ARALYDRAFT_481441 [Arabidopsis lyrata subsp. lyrata] gi|297326556|gb|EFH56976.1| hypothetical protein ARALYDRAFT_481441 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query348
TAIR|locus:2166419336 SYP31 "syntaxin of plants 31" 0.879 0.910 0.415 2.4e-51
ZFIN|ZDB-GENE-040718-18302 stx5a "syntaxin 5A" [Danio rer 0.344 0.397 0.404 2.2e-36
ASPGD|ASPL0000075749344 sed5 [Emericella nidulans (tax 0.908 0.918 0.321 4e-35
UNIPROTKB|E2R287355 STX5 "Uncharacterized protein" 0.221 0.216 0.506 2.2e-33
UNIPROTKB|Q08DB5355 STX5 "Syntaxin-5" [Bos taurus 0.221 0.216 0.506 4.5e-33
UNIPROTKB|Q13190355 STX5 "Syntaxin-5" [Homo sapien 0.221 0.216 0.506 9.3e-33
UNIPROTKB|I3LPE5355 STX5 "Uncharacterized protein" 0.221 0.216 0.493 3.3e-32
UNIPROTKB|B4DKR0259 STX5 "Syntaxin-5" [Homo sapien 0.221 0.297 0.506 4.3e-32
UNIPROTKB|G5EGY8329 MGCH7_ch7g683 "Integral membra 0.873 0.924 0.313 4.7e-32
RGD|68426355 Stx5 "syntaxin 5" [Rattus norv 0.221 0.216 0.506 5e-32
TAIR|locus:2166419 SYP31 "syntaxin of plants 31" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 533 (192.7 bits), Expect = 2.4e-51, P = 2.4e-51
 Identities = 136/327 (41%), Positives = 183/327 (55%)

Query:     8 SSYRDRTQEFLSVVERLKKXXXXXXXXXXXXXXXXXXRAVTKPEDRKFAVAIQSEFNKRA 67
             S++RDRT E  S+ + LKK                  R+   P          SEFNK+A
Sbjct:     3 STFRDRTVELHSLSQTLKKIGAIPSVHQDEDDPASSKRS--SPG---------SEFNKKA 51

Query:    68 SKIGYGIHQTSQXXXXXXXXXXRTSVFDDPTFEIQELTAVIKQDITALNSAVVDLQLLCN 127
             S+IG GI +TSQ          ++++F+D T EIQELT +I+ DIT LN A+ DLQ L N
Sbjct:    52 SRIGLGIKETSQKITRLAKLAKQSTIFNDRTVEIQELTVLIRNDITGLNMALSDLQTLQN 111

Query:   128 SQNESGNIXXXXXXXXXXXXXNLKNRLMGTTKEFKEVLTMRTENLKVHENRRQLFSS-NA 186
              +   GN              +LK RLMG TK+ ++VLT R+EN+K HENR+QLFS+ NA
Sbjct:   112 MELADGNYSQDQVGHYTAVCDDLKTRLMGATKQLQDVLTTRSENMKAHENRKQLFSTKNA 171

Query:   187 --SKESTNP--FVRQRPLATRLDGGASTASP--PPWANGSASSSRLFPSKQADGESLPLL 240
               S    N        P ++  +   +   P  PP   G+   S+L   +++  E+ P  
Sbjct:   172 VDSPPQNNAKSVPEPPPWSSSSNPFGNLQQPLLPPLNTGAPPGSQL--RRRSAIENAPSQ 229

Query:   241 XXXXXXXXXXMVPLQDSYMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDEN 300
                        VP Q++Y  SRA ALH+VES I EL  IF QLATMV+QQGE+AIRID+N
Sbjct:   230 QMEMSLLQQT-VPKQENYSQSRAVALHSVESRITELSGIFPQLATMVTQQGELAIRIDDN 288

Query:   301 MDDTLANVEGAQSQLVRYLNSISSNRW 327
             MD++L NVEGA+S L+++L  ISSNRW
Sbjct:   289 MDESLVNVEGARSALLQHLTRISSNRW 315
GO:0005484 "SNAP receptor activity" evidence=IEA;TAS
GO:0005794 "Golgi apparatus" evidence=ISM
GO:0006886 "intracellular protein transport" evidence=IEA;TAS
GO:0016192 "vesicle-mediated transport" evidence=IEA
GO:0006944 "cellular membrane fusion" evidence=RCA;TAS
GO:0009504 "cell plate" evidence=IDA
GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA
ZFIN|ZDB-GENE-040718-18 stx5a "syntaxin 5A" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ASPGD|ASPL0000075749 sed5 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|E2R287 STX5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q08DB5 STX5 "Syntaxin-5" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q13190 STX5 "Syntaxin-5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|I3LPE5 STX5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|B4DKR0 STX5 "Syntaxin-5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|G5EGY8 MGCH7_ch7g683 "Integral membrane protein sed5" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
RGD|68426 Stx5 "syntaxin 5" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O13644SED5_SCHPONo assigned EC number0.34710.87930.9902yesno
Q9LK09SYP32_ARATHNo assigned EC number0.70300.97120.9740yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query348
pfam0573962 pfam05739, SNARE, SNARE domain 3e-14
pfam00804103 pfam00804, Syntaxin, Syntaxin 1e-11
cd0019360 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-se 6e-11
smart0039766 smart00397, t_SNARE, Helical region found in SNARE 8e-11
COG5325283 COG5325, COG5325, t-SNARE complex subunit, syntaxi 7e-09
COG5074280 COG5074, COG5074, t-SNARE complex subunit, syntaxi 2e-06
>gnl|CDD|203323 pfam05739, SNARE, SNARE domain Back     alignment and domain information 
 Score = 66.0 bits (162), Expect = 3e-14
 Identities = 24/62 (38%), Positives = 36/62 (58%)

Query: 262 RAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRYLNS 321
           R EAL  +ES+I EL  +F  +   V +QGE+  RID+N+D+T + VE A  +L +    
Sbjct: 1   RDEALEELESSIGELKQLFLDMGEEVEEQGELLDRIDDNVDNTQSRVERANKRLKKAARY 60

Query: 322 IS 323
             
Sbjct: 61  QK 62

Most if not all vesicular membrane fusion events in eukaryotic cells are believed to be mediated by a conserved fusion machinery, the SNARE [soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptors] machinery. The SNARE domain is thought to act as a protein-protein interaction module in the assembly of a SNARE protein complex. Length = 62
>gnl|CDD|201451 pfam00804, Syntaxin, Syntaxin Back     alignment and domain information
>gnl|CDD|238115 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>gnl|CDD|197699 smart00397, t_SNARE, Helical region found in SNAREs Back     alignment and domain information
>gnl|CDD|227635 COG5325, COG5325, t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|227406 COG5074, COG5074, t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 348
KOG0812311 consensus SNARE protein SED5/Syntaxin 5 [Intracell 100.0
KOG0809305 consensus SNARE protein TLG2/Syntaxin 16 [Intracel 100.0
KOG0810297 consensus SNARE protein Syntaxin 1 and related pro 99.97
KOG0811269 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt 99.9
COG5074280 t-SNARE complex subunit, syntaxin [Intracellular t 99.9
COG5325283 t-SNARE complex subunit, syntaxin [Intracellular t 99.9
KOG3894316 consensus SNARE protein Syntaxin 18/UFE1 [Intracel 99.82
PF0573963 SNARE: SNARE domain; InterPro: IPR000727 The proce 99.44
cd0019360 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fu 99.29
KOG3202235 consensus SNARE protein TLG1/Syntaxin 6 [Intracell 99.22
smart0039766 t_SNARE Helical region found in SNAREs. All alpha- 99.2
PF00804103 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins 98.95
cd00179151 SynN Syntaxin N-terminus domain; syntaxins are ner 98.9
smart00503117 SynN Syntaxin N-terminal domain. Three-helix domai 98.7
KOG3385118 consensus V-SNARE [Intracellular trafficking, secr 97.88
PF1049687 Syntaxin-18_N: SNARE-complex protein Syntaxin-18 N 97.59
PF1141629 Sed5p: Integral membrane protein Sed5p; InterPro: 97.52
KOG0810297 consensus SNARE protein Syntaxin 1 and related pro 97.47
PF0095789 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 97.37
KOG1666220 consensus V-SNARE [Intracellular trafficking, secr 97.32
KOG0811269 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt 97.17
PF09753251 Use1: Membrane fusion protein Use1; InterPro: IPR0 97.1
KOG0860116 consensus Synaptobrevin/VAMP-like protein [Intrace 97.03
PF14523102 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A. 96.91
COG5325283 t-SNARE complex subunit, syntaxin [Intracellular t 96.67
KOG3251213 consensus Golgi SNAP receptor complex member [Intr 95.95
PF0390892 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membr 95.46
COG5074280 t-SNARE complex subunit, syntaxin [Intracellular t 94.81
KOG2678244 consensus Predicted membrane protein [Function unk 94.04
KOG3208231 consensus SNARE protein GS28 [Intracellular traffi 93.79
KOG3065273 consensus SNAP-25 (synaptosome-associated protein) 93.44
PF0917797 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IP 92.08
PF1235266 V-SNARE_C: Snare region anchored in the vesicle me 91.75
KOG0809305 consensus SNARE protein TLG2/Syntaxin 16 [Intracel 89.81
PF05478 806 Prominin: Prominin; InterPro: IPR008795 The promin 89.24
PF0988959 DUF2116: Uncharacterized protein containing a Zn-r 87.3
PF0095789 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 84.48
KOG0860116 consensus Synaptobrevin/VAMP-like protein [Intrace 84.18
PF1077971 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemoly 83.55
PF09753251 Use1: Membrane fusion protein Use1; InterPro: IPR0 83.18
PF0988959 DUF2116: Uncharacterized protein containing a Zn-r 80.73
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=1.9e-61  Score=430.12  Aligned_cols=307  Identities=45%  Similarity=0.663  Sum_probs=248.0

Q ss_pred             CCcCCChHHHHHHHHHHHhhhhcCCCCCCCCCCCCCcccCCCCccchhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018979            8 SSYRDRTQEFLSVVERLKKSVASANNAPSSSGSSNSSRAVTKPEDRKFAVAIQSEFNKRASKIGYGIHQTSQKLAKLAKL   87 (348)
Q Consensus         8 ~~~~DRT~eF~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~a~~I~~~I~~~~~~L~~L~~L   87 (348)
                      |++||||.||++||+++++|+...+...  ..|        .   ......+.+||.+.|+.|+++|+.+.+||++|+.|
T Consensus         1 m~~rDRT~Ef~~~~~s~~~r~~~~~~~~--~~p--------~---~~~~~~~~seF~~~A~~Ig~~is~T~~kl~kLa~l   67 (311)
T KOG0812|consen    1 MSFRDRTSEFQAAVKSLKKRNATRGVNQ--ADP--------G---ADKTVSQGSEFNKKASRIGKEISQTGAKLEKLAQL   67 (311)
T ss_pred             CCcchhhHHHHHHHHHHHHHhhcccccc--CCC--------c---ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7899999999999999999875432221  111        1   12345567799999999999999999999999999


Q ss_pred             HhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhhhHHHHHHHHHHHHHHHhHHHHHHHHH
Q 018979           88 AKRTSVFDDPTFEIQELTAVIKQDITALNSAVVDLQLLCNSQNESGNISSDTTSHSTTVVDNLKNRLMGTTKEFKEVLTM  167 (348)
Q Consensus        88 ~k~~~lf~d~~~eI~~Lt~~Ik~~i~~~~~~I~~Lq~~~~~~~~~~~~~~~~~~h~~nvv~~L~~~L~~ls~~Fk~~~~~  167 (348)
                      +|++++|+|++.||++||+.||+++..++..|.+|+...+..+.  ..+.+...|.+|||..|+++|++++++|+++++.
T Consensus        68 AKrks~f~Dr~VeI~eLT~iikqdi~sln~~i~~Lqei~~~~gn--~s~~~~~~Hs~~vV~~Lqs~la~is~~fk~VLE~  145 (311)
T KOG0812|consen   68 AKRKSLFDDRPVEIQELTFIIKQDITSLNSQIAQLQEIVKANGN--LSNKQLVQHSKNVVVSLQSKLANISKDFKDVLEI  145 (311)
T ss_pred             HhhcccccCcchhhHHHHHHHhcchHHHHHHHHHHHHHHHHhcc--ccchHhhhhhHHHHHHHHHHHHhhhhhHHHHHHH
Confidence            99999999999999999999999999999999999998854431  1235668999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhhccCCCcCCCCcccccCCcccccCCCCCCCCCCCCC---CCCC-CCCCCCCCccCCCCCchhhhhh
Q 018979          168 RTENLKVHENRRQLFSSNASKESTNPFVRQRPLATRLDGGASTASPPPWA---NGSA-SSSRLFPSKQADGESLPLLQQQ  243 (348)
Q Consensus       168 r~~~~k~~~~R~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~p~~~~~  243 (348)
                      |++++|+.+.|+++|+...+.....|. +.           .++.+.|+.   ...+ .+..+...+.++.+ .|     
T Consensus       146 Rtenmka~k~R~dkfs~~~a~~~a~p~-~n-----------~~a~~~~~~~l~~~~~~~sq~~~~ln~gd~~-~~-----  207 (311)
T KOG0812|consen  146 RTENMKAVKNRRDKFSASYASLNANPV-SN-----------SAARLHPLKLLVDPKDEASQDVESLNMGDSS-NP-----  207 (311)
T ss_pred             HHHHHHHHhhHHHHhccccCCCCCccc-Cc-----------ccccCCchhhhcCchhhcccccccccccCCC-CC-----
Confidence            999999999999999877543221221 10           011111110   0000 11111111112211 11     


Q ss_pred             hHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcc
Q 018979          244 QGQQQQQMVPLQDSYMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRYLNSIS  323 (348)
Q Consensus       244 ~~q~Q~ql~~~~~~~l~~R~~~i~~ie~~i~el~~lf~~l~~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~ka~~~~~  323 (348)
                       .++|++++++.++|+++|..++++||++|.|||+||++||+||.+|||++.|||+||+++..||++|+.+|.||+++.+
T Consensus       208 -qqqQm~ll~es~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vS  286 (311)
T KOG0812|consen  208 -QQQQMALLDESDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVS  286 (311)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhc
Confidence             1567777788899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchhHHHHHHHHHHHHHHHHHHhC
Q 018979          324 SNRWLMLKIFFVLVVFLMIFLFFVA  348 (348)
Q Consensus       324 ~~r~~~~~if~vl~~f~l~f~~~~~  348 (348)
                      +|||+|++||+|+|||||+|+||.|
T Consensus       287 SNRwLmvkiF~i~ivFflvfvlf~~  311 (311)
T KOG0812|consen  287 SNRWLMVKIFGILIVFFLVFVLFLA  311 (311)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999986

>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ] Back     alignment and domain information
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00397 t_SNARE Helical region found in SNAREs Back     alignment and domain information
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane Back     alignment and domain information
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain Back     alignment and domain information
>smart00503 SynN Syntaxin N-terminal domain Back     alignment and domain information
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10496 Syntaxin-18_N: SNARE-complex protein Syntaxin-18 N-terminus ; InterPro: IPR019529 This is the conserved N-terminal of Syntaxin-18 Back     alignment and domain information
>PF11416 Sed5p: Integral membrane protein Sed5p; InterPro: IPR021538 Sed5p interacts with Sly1p , a positive regulator of intracellular membrane fusion, allowing SM proteins to stay associated with the assembling fusion machinery Back     alignment and domain information
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis Back     alignment and domain information
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport Back     alignment and domain information
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A Back     alignment and domain information
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway Back     alignment and domain information
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2678 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle Back     alignment and domain information
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C Back     alignment and domain information
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology Back     alignment and domain information
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown Back     alignment and domain information
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis Back     alignment and domain information
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [] Back     alignment and domain information
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport Back     alignment and domain information
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query348
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 2e-21
2xhe_B279 Syntaxin1; exocytosis, exocytosis complex, snare, 3e-18
1gl2_B65 Syntaxin 7; membrane protein, membrane fusion prot 5e-18
1dn1_B267 Syntaxin 1A, syntaxin binding protein 1; protein-p 8e-18
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 2e-15
3b5n_B69 Protein SSO1; snare complex, syntaxin, synaptobrev 5e-14
1sfc_B83 Protein (syntaxin 1A), protein (synaptobrevin 2); 1e-13
1n7s_B68 Syntaxin 1A; neuronal snare protein complex, four 6e-13
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 1e-12
1fio_A196 SSO1 protein; four helix bundle, alpha helix, memb 7e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-05
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Length = 109 Back     alignment and structure
 Score = 86.7 bits (215), Expect = 2e-21
 Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 4/107 (3%)

Query: 241 QQQQGQQQQQMVPLQDSYMHSRAEALHNVESTIHELGNIFTQLATMVSQQGEIAIRIDEN 300
                   +Q +    S + +R   +  +E++I EL ++F  +A +V  QGE+  RI+ N
Sbjct: 2   SHMDSSISKQAL----SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYN 57

Query: 301 MDDTLANVEGAQSQLVRYLNSISSNRWLMLKIFFVLVVFLMIFLFFV 347
           ++  +  VE A S   + +   S  R   + I    V+  +I    +
Sbjct: 58  VEHAVDYVERAVSDTKKAVKYQSKARRKKIMIIICCVILGIIIASTI 104
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Length = 279 Back     alignment and structure
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Length = 65 Back     alignment and structure
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 3c98_B Length = 267 Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Length = 71 Back     alignment and structure
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Length = 69 Back     alignment and structure
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Length = 83 Back     alignment and structure
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Length = 68 Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Length = 77 Back     alignment and structure
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1 Length = 196 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query348
2xhe_B279 Syntaxin1; exocytosis, exocytosis complex, snare, 99.97
1dn1_B267 Syntaxin 1A, syntaxin binding protein 1; protein-p 99.96
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 99.9
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 99.86
3c98_B279 Syntaxin-1A; protein complex, alternative splicing 99.84
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 99.84
1sfc_B83 Protein (syntaxin 1A), protein (synaptobrevin 2); 99.82
3b5n_B69 Protein SSO1; snare complex, syntaxin, synaptobrev 99.81
1fio_A196 SSO1 protein; four helix bundle, alpha helix, memb 99.8
1n7s_B68 Syntaxin 1A; neuronal snare protein complex, four 99.77
1gl2_B65 Syntaxin 7; membrane protein, membrane fusion prot 99.77
1s94_A180 S-syntaxin; three helix bundle, structural plastic 99.21
1ez3_A127 Syntaxin-1A; three helix bundle, endocytosis/exocy 99.02
2nps_D82 Syntaxin-6; vesicle fusion, snare complex, early e 97.95
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 97.87
2dnx_A130 Syntaxin-12; snare, HABC domain, UP and DOWN three 97.66
1gl2_D65 Syntaxin 8, vesicle transport V-snare protein VTI1 97.49
1sfc_D87 Protein (SNAP-25B), protein (synaptobrevin 2); mem 97.49
1n7s_D66 SNAP-25A; neuronal snare protein complex, four hel 97.47
1l4a_D87 S-SNAP25 fusion protein; snare, snare complex, mem 97.14
3hd7_A91 Vesicle-associated membrane protein 2; membrane pr 96.98
3b5n_D64 Protein transport protein SEC9; snare complex, syn 96.93
1mqs_B50 SED5P, integral membrane protein SED5; SM-protein, 96.92
1nhl_A54 Synaptosomal-associated protein 23; snare, coiled- 96.46
1n7s_C79 SNAP-25A; neuronal snare protein complex, four hel 96.15
3b5n_C70 Protein transport protein SEC9; snare complex, syn 94.8
1l4a_C83 S-SNAP25 fusion protein; snare, snare complex, mem 94.04
1gl2_C65 VTI1B, vesicle transport V-snare protein VTI1-like 92.58
2kog_A119 Vesicle-associated membrane protein 2; synaptobrev 91.69
2nps_C81 Vesicle transport through interaction with T- snar 89.42
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 89.23
4dnd_A130 Syntaxin-10, SYN10; structural genomics, protein s 86.89
3hd7_A91 Vesicle-associated membrane protein 2; membrane pr 81.39
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Back     alignment and structure
Probab=99.97  E-value=1.1e-32  Score=256.32  Aligned_cols=232  Identities=14%  Similarity=0.206  Sum_probs=156.0

Q ss_pred             hhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018979           55 FAVAIQSEFNKRASKIGYGIHQTSQKLAKLAKLAKRT---SVFDD---PTFEIQELTAVIKQDITALNSAVVDLQLLCNS  128 (348)
Q Consensus        55 ~~~~~~~~F~~~a~~I~~~I~~~~~~L~~L~~L~k~~---~lf~d---~~~eI~~Lt~~Ik~~i~~~~~~I~~Lq~~~~~  128 (348)
                      .....+++|+..+++|..+|..+..++.+|.+||++.   +.|++   ...+|+.++..|++.++.|+..|+.|+...+.
T Consensus        38 ~~~~~~~~F~~~~~~I~~~I~~i~~~l~~L~~l~~~~l~t~~~~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~~~~  117 (279)
T 2xhe_B           38 QPEPFMADFFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKR  117 (279)
T ss_dssp             --CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556789999999999999999999999999999875   34555   24789999999999999999999999987653


Q ss_pred             cCCC---CCCCcc-hhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccCCCcCCCCcccccCCccccc
Q 018979          129 QNES---GNISSD-TTSHSTTVVDNLKNRLMGTTKEFKEVLTMRTENLKVHENRRQLFSSNASKESTNPFVRQRPLATRL  204 (348)
Q Consensus       129 ~~~~---~~~~~~-~~~h~~nvv~~L~~~L~~ls~~Fk~~~~~r~~~~k~~~~R~~~~~~~~~~~~~~p~~~~~~~~~~~  204 (348)
                      ....   +..+.. ...|+.+++..|..+|++++..|+.++..|.+.+|.+..|...+..+.+.+               
T Consensus       118 ~~~~~~~~~~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q~~y~e~~k~~~~R~~~i~~~~~~~---------------  182 (279)
T 2xhe_B          118 AQQEGTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGENVARQCRVVEPSLSD---------------  182 (279)
T ss_dssp             THHHHCCSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCSSCCCCSS---------------
T ss_pred             hhhcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH---------------
Confidence            2100   011222 558999999999999999999999999999999987666542222111000               


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCchhhhhhhHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018979          205 DGGASTASPPPWANGSASSSRLFPSKQADGESLPLLQQQQGQQQQQMVPLQDSYMHSRAEALHNVESTIHELGNIFTQLA  284 (348)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~q~Q~ql~~~~~~~l~~R~~~i~~ie~~i~el~~lf~~l~  284 (348)
                                    +  ....+++.  ++..   .+.    +.+.+......+++++|+++|.+||++|.||++||.+|+
T Consensus       183 --------------e--e~~~~~e~--g~~~---~f~----q~~~~~~~~~~~~i~eR~~eI~~Ie~~i~el~~if~dla  237 (279)
T 2xhe_B          183 --------------D--AIQKVIEH--GTEG---IFS----GMRLEGAEAKLNEIRDRHKDIQQLERSLLELHEMFTDMS  237 (279)
T ss_dssp             --------------T--THHHHHHH--C------------------------CTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------------H--HHHHHHhC--CchH---HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          0  00000000  0000   011    111122233456899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcccCc
Q 018979          285 TMVSQQGEIAIRIDENMDDTLANVEGAQSQLVRYLNSISSNR  326 (348)
Q Consensus       285 ~~V~~Qge~id~Id~nv~~~~~~v~~g~~~L~ka~~~~~~~r  326 (348)
                      +||.+||++||+||+||+.|..||+.|+.+|.+|.+|++++|
T Consensus       238 ~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA~~~qk~~R  279 (279)
T 2xhe_B          238 TLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQARHYQESAR  279 (279)
T ss_dssp             TTTTTSCSSTTCHHHHHHTCCCCC------------------
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccC
Confidence            999999999999999999999999999999999999999876
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Back     alignment and structure
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Back     alignment and structure
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Back     alignment and structure
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1 Back     alignment and structure
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Back     alignment and structure
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Back     alignment and structure
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1 Back     alignment and structure
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A* Back     alignment and structure
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens} Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B Back     alignment and structure
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A Back     alignment and structure
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1mqs_B SED5P, integral membrane protein SED5; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A Back     alignment and structure
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Back     alignment and structure
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus} Back     alignment and structure
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Back     alignment and structure
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A Back     alignment and structure
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 348
d1fioa_196 a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces c 3e-19
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196 Back     information, alignment and structure

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.1 bits (202), Expect = 3e-19
 Identities = 28/230 (12%), Positives = 72/230 (31%), Gaps = 39/230 (16%)

Query: 61  SEFNKRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPTFEIQELTAVIKQDITALNSAVV 120
             F  + S+I   + +    + ++  L KR     +      E  + ++  +    +   
Sbjct: 5   VGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNE-----EQASHLRHSLDNFVAQAT 59

Query: 121 DLQLLCNSQNESGNISSDTTSHSTTVVDNLKNRLMGTTKEFKEVLTMRTENLKVHENRRQ 180
           DLQ    ++ +S        ++     +N + R +   ++++ V +   E  K    R+ 
Sbjct: 60  DLQFKLKNEIKSAQRDGIHDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQY 119

Query: 181 LFSSNASKESTNPFVRQRPLATRLDGGASTASPPPWANGSASSSRLFPSKQADGESLPLL 240
           +                                       A+   +  +    G      
Sbjct: 120 MII----------------------------------QPEATEDEVEAAISDVGGQQIFS 145

Query: 241 QQQQGQQQQQMVPLQDSYMHSRAEALHNVESTIHELGNIFTQLATMVSQQ 290
           Q      ++       + + +R + L  +E ++ EL  +F  +  +V +Q
Sbjct: 146 QALLNANRRGEAKTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQ 195

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query348
d1fioa_196 Sso1 {Baker's yeast (Saccharomyces cerevisiae) [Ta 99.69
d1ez3a_124 Syntaxin 1A N-terminal domain {Rat (Rattus norvegi 98.78
d1lvfa_106 Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicu 92.58
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=5.6e-17  Score=139.61  Aligned_cols=186  Identities=14%  Similarity=0.190  Sum_probs=129.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 018979           60 QSEFNKRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPT------FEIQELTAVIKQDITALNSAVVDLQLLCNSQNESG  133 (348)
Q Consensus        60 ~~~F~~~a~~I~~~I~~~~~~L~~L~~L~k~~~lf~d~~------~eI~~Lt~~Ik~~i~~~~~~I~~Lq~~~~~~~~~~  133 (348)
                      ..+|+..+++|...|..+...+.+|..++++.....+..      .+|+.++..++..+..|+..+..++..        
T Consensus         4 ~~~f~~~v~~I~~~i~~i~~~i~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~k~~~~~~~~~--------   75 (196)
T d1fioa_           4 FVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRD--------   75 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--------
Confidence            568999999999999999999999999998864433222      356666777777777777776666532        


Q ss_pred             CCCcchhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhccCCCcCCCCcccccCCcccccCCCCCCCCC
Q 018979          134 NISSDTTSHSTTVVDNLKNRLMGTTKEFKEVLTMRTENLKVHENRRQLFSSNASKESTNPFVRQRPLATRLDGGASTASP  213 (348)
Q Consensus       134 ~~~~~~~~h~~nvv~~L~~~L~~ls~~Fk~~~~~r~~~~k~~~~R~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  213 (348)
                         .....++.+++..|..+|.+++..|+.++..|.+.+|+...|...+..+.....        ....           
T Consensus        76 ---~~~~~~~~~~~~~l~~~l~~~~~~f~~~q~~~~~~~k~~~~r~~~~~~~~~~~~--------~~~~-----------  133 (196)
T d1fioa_          76 ---GIHDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMIIQPEATED--------EVEA-----------  133 (196)
T ss_dssp             ---TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCHH--------HHHH-----------
T ss_pred             ---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCccch--------hhhH-----------
Confidence               223467899999999999999999999999999999998888877654432110        0000           


Q ss_pred             CCCCCCCCCCCCCCCCccCCCCCchhhhhhhHHH-HHHhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018979          214 PPWANGSASSSRLFPSKQADGESLPLLQQQQGQQ-QQQMVPLQDSYMHSRAEALHNVESTIHELGNIFTQLATMVSQQG  291 (348)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~q~-Q~ql~~~~~~~l~~R~~~i~~ie~~i~el~~lf~~l~~~V~~Qg  291 (348)
                                  ...    +......+.+..... ..+.......++++|+++|.+||++|.||++||.+||+||.+|.
T Consensus       134 ------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eR~~eI~~Ie~sI~eL~~iF~dLa~LV~eQ~  196 (196)
T d1fioa_         134 ------------AIS----DVGGQQIFSQALLNANRRGEAKTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQ  196 (196)
T ss_dssp             ------------HTS----HHHHHHHHHHHTC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred             ------------hhc----cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccC
Confidence                        000    000000000000000 01112235688999999999999999999999999999999883
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure