Citrus Sinensis ID: 018982

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35
MSTSNLYCSSMALLVREPQGGSCLHFVKPFSADGCLSIKNVGRIKTAALVSGEGDVISYPNNNKKYTAIETQSDTIGFGTLGAEITPKTSDFFPNDDEFDLDRPTKGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKL
cccccccccccccccccccccccccccccccccccEEEEccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccEEEEEcccccccccccHHHcccccHHHHHHHHHHcccEEEccccHHHHHHcccccccccccccccccccEEEEEEccccccccccHHHHHHHHHHHHccccccccccccccccccccccccEEEccccHHHHHHHHHHHcccccEEEEEEEccccccccHHHHHHHHHHccccEEEHHHHHHHHHHccccEEEEEEEccccccccEEEEEEEEcccccEEEEEEEc
ccEEEEEcccEEEEcccccccccccccccccccccEEEcccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccEEEEccccccccEEEEEEHHHccHHHHHHHHHHEccccEEEEcHHHHHHccccEccccccccccccEEccEEEcccccccccccHHHHHHHHHHHHcccccHHHEEEEEEEEEEEccccHHHccccHHHHHHHHHHHcccccEEEEEEEEEccccccccHHHHHHHHHccccEEEHHHHHHHHHHHcHHEEEEEEEccccccccEEEEEEEEcccccEEEEEEEc
MSTSNLYCSSMALLvrepqggsclhfvkpfsadgclsiknvgrIKTAALVsgegdvisypnnnkkytaietqsdtigfgtlgaeitpktsdffpnddefdldrptkgfASISEAIEDIRQGKLVIVVddedrenegdlimaaslvtPEAMAFIVRHGTGIVcvsmkgedlerlelplmvnhkdneEKLCTAFTVsvdakygtttgvsanDRAKTVLALAcrdskpedfnrpghifplkyreggvlkraghteaSVDLAVLAGLEPVAVLCEIvdddgsmarlpkLRQFAQTENLKIISIADLIRYRRKRDRLVELAaaapiptmwgpfkaHCYRSLLDGIEHIAMVKL
MSTSNLYCSSMALLVREPQGGSCLHFVKPFSADGCLSIKNVGRIKTAALvsgegdvisypnNNKKYTAIETQSDTIGFGTLGAEITPKTSDFFPNDDEFDLDRPTKGFASISEaiedirqgklVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVsvdakygtttgvsandraKTVLALAcrdskpedfnrpghifpLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLrqfaqtenlkiisiadliRYRRKRDRLVELAAaapiptmwgpfKAHCYRSLLDGIEHIAMVKL
MSTSNLYCSSMALLVREPQGGSCLHFVKPFSADGCLSIKNVGRIKTAALVSGEGDVISYPNNNKKYTAIETQSDTIGFGTLGAEITPKTSDFFPNDDEFDLDRPTKGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKL
*****LYCSSMALLVREPQGGSCLHFVKPFSADGCLSIKNVGRIKTAALVSGEGDVISYPNNNKKYTAIETQSDTIGFGTLGAEITPKTSDFFP****FDL***TKGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDS**EDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAM***
**********************************CLSIKNVG*****************************************************************FASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKL
MSTSNLYCSSMALLVREPQGGSCLHFVKPFSADGCLSIKNVGRIKTAALVSGEGDVISYPNNNKKYTAIETQSDTIGFGTLGAEITPKTSDFFPNDDEFDLDRPTKGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKL
MSTSNLYCSSMALLVREPQGGSCLHFVKPFSADGCLSIKNVGRIKTAALVSGEGDVISYP******************GTLGAEITPKTSDFFPNDDEFDLDRPTKGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKL
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSTSNLYCSSMALLVREPQGGSCLHFVKPFSADGCLSIKNVGRIKTAALVSGEGDVISYPNNNKKYTAIETQSDTIGFGTLGAEITPKTSDFFPNDDEFDLDRPTKGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVKL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query348 2.2.26 [Sep-21-2011]
P47924 543 Riboflavin biosynthesis p no no 0.893 0.572 0.727 1e-132
O66679 406 Riboflavin biosynthesis p yes no 0.678 0.581 0.591 3e-74
Q0AXM5 398 Riboflavin biosynthesis p yes no 0.678 0.592 0.572 3e-73
A0Q3H7 414 Riboflavin biosynthesis p yes no 0.678 0.570 0.543 3e-70
Q9JZ77 363 3,4-dihydroxy-2-butanone yes no 0.683 0.655 0.520 2e-69
Q9JU97 363 3,4-dihydroxy-2-butanone yes no 0.683 0.655 0.520 5e-69
B0K0Y9 396 Riboflavin biosynthesis p yes no 0.678 0.595 0.564 6e-69
B0KAI2 396 Riboflavin biosynthesis p yes no 0.678 0.595 0.560 6e-68
P74104 556 Riboflavin biosynthesis p N/A no 0.683 0.428 0.533 7e-68
Q9Z734 418 Riboflavin biosynthesis p yes no 0.683 0.569 0.533 4e-67
>sp|P47924|RIBBA_ARATH Riboflavin biosynthesis protein ribBA, chloroplastic OS=Arabidopsis thaliana GN=RIBBA PE=2 SV=2 Back     alignment and function desciption
 Score =  471 bits (1211), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 235/323 (72%), Positives = 268/323 (82%), Gaps = 12/323 (3%)

Query: 36  LSIK-NVGRIKTAALVSGEGDVISYPNNNKKY---------TAIETQSDTIGFGTLGAEI 85
            SIK N G++K AA++S E D++S+ N N            T    ++D++  GTL A+ 
Sbjct: 46  FSIKTNTGKVK-AAVISREDDLLSFTNGNTPLSNGSLIDDRTEEPLEADSVSLGTLAADS 104

Query: 86  TPKTSD-FFPNDDEFDLDRPTKGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASL 144
            P  ++ F   DD+F+LD PT GF+SI EAIEDIRQGKLV+VVDDEDRENEGDL+MAA L
Sbjct: 105 APAPANGFVAEDDDFELDLPTPGFSSIPEAIEDIRQGKLVVVVDDEDRENEGDLVMAAQL 164

Query: 145 VTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTT 204
            TPEAMAFIVRHGTGIVCVSMK +DLERL LPLMVN K+NEEKL TAFTV+VDAK+GTTT
Sbjct: 165 ATPEAMAFIVRHGTGIVCVSMKEDDLERLHLPLMVNQKENEEKLSTAFTVTVDAKHGTTT 224

Query: 205 GVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLE 264
           GVSA DRA T+L+LA RDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDL VLAGL+
Sbjct: 225 GVSARDRATTILSLASRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLTVLAGLD 284

Query: 265 PVAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTM 324
           PV VLCEIVDDDGSMARLPKLR+FA   NLK++SIADLIRYRRKRD+LVE A+AA IPTM
Sbjct: 285 PVGVLCEIVDDDGSMARLPKLREFAAENNLKVVSIADLIRYRRKRDKLVERASAARIPTM 344

Query: 325 WGPFKAHCYRSLLDGIEHIAMVK 347
           WGPF A+CYRS+LDGIEHIAMVK
Sbjct: 345 WGPFTAYCYRSILDGIEHIAMVK 367
Catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 5EC: .EC: 4EC: .EC: 2EC: 5
>sp|O66679|RIBBA_AQUAE Riboflavin biosynthesis protein RibBA OS=Aquifex aeolicus (strain VF5) GN=ribBA PE=3 SV=1 Back     alignment and function description
>sp|Q0AXM5|RIBBA_SYNWW Riboflavin biosynthesis protein RibBA OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=ribBA PE=3 SV=1 Back     alignment and function description
>sp|A0Q3H7|RIBBA_CLONN Riboflavin biosynthesis protein RibBA OS=Clostridium novyi (strain NT) GN=ribBA PE=3 SV=1 Back     alignment and function description
>sp|Q9JZ77|RIBB_NEIMB 3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Neisseria meningitidis serogroup B (strain MC58) GN=ribB PE=3 SV=1 Back     alignment and function description
>sp|Q9JU97|RIBB_NEIMA 3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) GN=ribB PE=3 SV=1 Back     alignment and function description
>sp|B0K0Y9|RIBBA_THEPX Riboflavin biosynthesis protein RibBA OS=Thermoanaerobacter sp. (strain X514) GN=ribBA PE=3 SV=1 Back     alignment and function description
>sp|B0KAI2|RIBBA_THEP3 Riboflavin biosynthesis protein RibBA OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=ribBA PE=3 SV=1 Back     alignment and function description
>sp|P74104|RIBBA_SYNY3 Riboflavin biosynthesis protein RibBA OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=ribBA PE=3 SV=1 Back     alignment and function description
>sp|Q9Z734|RIBBA_CHLPN Riboflavin biosynthesis protein RibBA OS=Chlamydia pneumoniae GN=ribBA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query348
255587021 531 GTP cyclohydrolase II, putative [Ricinus 0.988 0.647 0.741 1e-149
225465770 559 PREDICTED: riboflavin biosynthesis prote 0.951 0.592 0.716 1e-140
296087438 845 unnamed protein product [Vitis vinifera] 0.951 0.391 0.716 1e-140
224096145 449 predicted protein [Populus trichocarpa] 0.804 0.623 0.875 1e-139
359480493 534 PREDICTED: riboflavin biosynthesis prote 0.979 0.638 0.698 1e-137
33308405 539 GTP cyclohydrolase II/3,4-dihydroxy-2-bu 0.977 0.630 0.715 1e-136
297821469 475 hypothetical protein ARALYDRAFT_900693 [ 0.985 0.722 0.704 1e-134
298561264 557 GTP cyclohydrolase II/3,4-dihydroxy-2-bu 0.939 0.587 0.712 1e-133
30681714 476 3,4-dihydroxy 2-butanone 4-phosphate syn 0.977 0.714 0.704 1e-133
4544447433 putative GTP cyclohydrolase [Arabidopsis 0.859 0.690 0.786 1e-133
>gi|255587021|ref|XP_002534102.1| GTP cyclohydrolase II, putative [Ricinus communis] gi|223525850|gb|EEF28284.1| GTP cyclohydrolase II, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 278/375 (74%), Positives = 302/375 (80%), Gaps = 31/375 (8%)

Query: 1   MSTSNLYCSSMALLVREPQGG-SCLHFVKPFSADG--------------CLSIKNVGRIK 45
           M++  LY SS        QGG   LH   PF+ +               C  +K V R++
Sbjct: 1   MASVYLYISSFN--PSPLQGGYKGLHCAYPFAPNDLTDLVVSSNPTRKLCFGLKGVSRVR 58

Query: 46  TAALVSGEGDVISYPNNN----------KKYT---AIETQSDTIGFGTLGAEITPKTSDF 92
            A+LVSGEGD++S  NNN           K+     +E Q D IGFGTL AEITP TS F
Sbjct: 59  -ASLVSGEGDLLSCHNNNGAPGQDTIVSNKFNPSPGLELQPDAIGFGTLSAEITPTTSAF 117

Query: 93  FPNDDEFDLDRPTKGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAF 152
           FP+DDE+DLD PT GFASI EAIEDIRQGKLVIVVDDEDRENEGDLIMAAS  TPE MAF
Sbjct: 118 FPDDDEYDLDHPTDGFASIPEAIEDIRQGKLVIVVDDEDRENEGDLIMAASKATPEVMAF 177

Query: 153 IVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRA 212
           IV+HGTGIVCVSMKGEDLERLELPLMV HK+NEEKLCTAFTV+VDAK+GTTTGVSA+DRA
Sbjct: 178 IVKHGTGIVCVSMKGEDLERLELPLMVTHKENEEKLCTAFTVTVDAKHGTTTGVSAHDRA 237

Query: 213 KTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEI 272
            TVLALA RDSKP DFNRPGHIFPLKYREGGVLKRAGHTEASVDL++LAGLEPVAVLCEI
Sbjct: 238 ATVLALASRDSKPGDFNRPGHIFPLKYREGGVLKRAGHTEASVDLSMLAGLEPVAVLCEI 297

Query: 273 VDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHC 332
           VDDDGSMARLP+LRQFAQTENLKIISIADLIRYRRKRDRLVELAA APIPTMWGPF+A+C
Sbjct: 298 VDDDGSMARLPRLRQFAQTENLKIISIADLIRYRRKRDRLVELAATAPIPTMWGPFEAYC 357

Query: 333 YRSLLDGIEHIAMVK 347
           YRSLLDGIEHIAMVK
Sbjct: 358 YRSLLDGIEHIAMVK 372

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225465770|ref|XP_002267374.1| PREDICTED: riboflavin biosynthesis protein ribBA, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296087438|emb|CBI34027.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224096145|ref|XP_002310549.1| predicted protein [Populus trichocarpa] gi|222853452|gb|EEE90999.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359480493|ref|XP_002266093.2| PREDICTED: riboflavin biosynthesis protein ribBA, chloroplastic-like [Vitis vinifera] gi|297741836|emb|CBI33149.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|33308405|gb|AAQ03091.1| GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase [Malus x domestica] Back     alignment and taxonomy information
>gi|297821469|ref|XP_002878617.1| hypothetical protein ARALYDRAFT_900693 [Arabidopsis lyrata subsp. lyrata] gi|297324456|gb|EFH54876.1| hypothetical protein ARALYDRAFT_900693 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|298561264|dbj|BAJ09646.1| GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase [Nicotiana benthamiana] Back     alignment and taxonomy information
>gi|30681714|ref|NP_179831.2| 3,4-dihydroxy 2-butanone 4-phosphate synthase [Arabidopsis thaliana] gi|44681386|gb|AAS47633.1| At2g22450 [Arabidopsis thaliana] gi|45773912|gb|AAS76760.1| At2g22450 [Arabidopsis thaliana] gi|110737823|dbj|BAF00850.1| putative GTP cyclohydrolase [Arabidopsis thaliana] gi|330252213|gb|AEC07307.1| 3,4-dihydroxy 2-butanone 4-phosphate synthase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|4544447|gb|AAD22355.1| putative GTP cyclohydrolase [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query348
TAIR|locus:2041253 476 RIBA2 "homolog of ribA 2" [Ara 0.856 0.626 0.787 2.1e-123
TAIR|locus:2173373 543 GCH "GTP cyclohydrolase II" [A 0.890 0.570 0.729 1.4e-119
TIGR_CMR|CHY_1473 401 CHY_1473 "3,4-dihydroxy-2-buta 0.683 0.593 0.593 6.1e-71
TIGR_CMR|GSU_1690 400 GSU_1690 "3,4-dihydroxy-2-buta 0.681 0.592 0.556 1.1e-66
TIGR_CMR|DET_1188 403 DET_1188 "3,4-dihydroxy-2-buta 0.678 0.585 0.525 9e-61
TIGR_CMR|BA_4333 397 BA_4333 "3,4-dihydroxy-2-butan 0.681 0.596 0.537 1.5e-60
UNIPROTKB|Q9KPU3 369 VC_2269 "3,4-dihydroxy-2-butan 0.669 0.631 0.523 4.5e-59
TIGR_CMR|SO_3467 367 SO_3467 "3,4-dihydroxy-2-butan 0.678 0.643 0.516 4.5e-59
TIGR_CMR|VC_2269 369 VC_2269 "3,4-dihydroxy-2-butan 0.669 0.631 0.523 4.5e-59
UNIPROTKB|P0A5V0 425 ribBA "Riboflavin biosynthesis 0.678 0.555 0.512 2.5e-58
TAIR|locus:2041253 RIBA2 "homolog of ribA 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1213 (432.1 bits), Expect = 2.1e-123, P = 2.1e-123
 Identities = 237/301 (78%), Positives = 260/301 (86%)

Query:    49 LVSGEGDVISYPNNNKKYTAIETQSDTIGFGTLGAEITPKTSDFFPN--DDEFDLDRPTK 106
             ++  EGDV S   +N     IE Q D + FGTL AE+ P T D  P   D+EFDLDRPT 
Sbjct:    46 VIPEEGDVFSSSKSNGSSMGIELQPDLVSFGTLAAEMIPTTMDS-PEVEDEEFDLDRPTD 104

Query:   107 GFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMK 166
             GFASI +AIEDIR GK+V+VVDDEDRENEGDLIMAASL TPEAMAF+V+HGTGIVCVSMK
Sbjct:   105 GFASIPQAIEDIRHGKMVVVVDDEDRENEGDLIMAASLATPEAMAFVVKHGTGIVCVSMK 164

Query:   167 GEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPE 226
             GEDLERLELPLMV  KDNEEKL TAFTVSVDAK GT+TGVSA DRA+T+L LA +DSKPE
Sbjct:   165 GEDLERLELPLMVTRKDNEEKLRTAFTVSVDAKKGTSTGVSARDRAQTILTLASKDSKPE 224

Query:   227 DFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLR 286
             DFNRPGHIFPL+YREGGVLKRAGHTEASVDL VLAGLEPV+VLCEIVDDDGSMARLP+LR
Sbjct:   225 DFNRPGHIFPLRYREGGVLKRAGHTEASVDLTVLAGLEPVSVLCEIVDDDGSMARLPRLR 284

Query:   287 QFAQTENLKIISIADLIRYRRKRDRLVELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMV 346
             QFAQ  NLK+ISIADLIRYRRKR+RLVE  A APIPTMWGPFKAHC++SLLDG+EHIAMV
Sbjct:   285 QFAQENNLKLISIADLIRYRRKRERLVEFTAVAPIPTMWGPFKAHCFKSLLDGVEHIAMV 344

Query:   347 K 347
             K
Sbjct:   345 K 345
GO:0003935 "GTP cyclohydrolase II activity" evidence=IEA;ISS
GO:0008686 "3,4-dihydroxy-2-butanone-4-phosphate synthase activity" evidence=IEA;ISS
GO:0009231 "riboflavin biosynthetic process" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0007623 "circadian rhythm" evidence=RCA
TAIR|locus:2173373 GCH "GTP cyclohydrolase II" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1473 CHY_1473 "3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1690 GSU_1690 "3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|DET_1188 DET_1188 "3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4333 BA_4333 "3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KPU3 VC_2269 "3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|SO_3467 SO_3467 "3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II, putative" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2269 VC_2269 "3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
UNIPROTKB|P0A5V0 ribBA "Riboflavin biosynthesis protein RibBA" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9JU97RIBB_NEIMA4, ., 1, ., 9, 9, ., 1, 20.52080.68390.6556yesno
Q9JZ77RIBB_NEIMB4, ., 1, ., 9, 9, ., 1, 20.52080.68390.6556yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer4.1.99.120.914
3rd Layer4.1.990.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query348
PLN02831 450 PLN02831, PLN02831, Bifunctional GTP cyclohydrolas 0.0
PRK09311 402 PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-b 1e-135
PRK09319 555 PRK09319, PRK09319, bifunctional 3,4-dihydroxy-2-b 1e-112
PRK14019 367 PRK14019, PRK14019, bifunctional 3,4-dihydroxy-2-b 1e-110
pfam00926193 pfam00926, DHBP_synthase, 3,4-dihydroxy-2-butanone 1e-109
COG0108203 COG0108, RibB, 3,4-dihydroxy-2-butanone 4-phosphat 1e-106
PRK09314339 PRK09314, PRK09314, bifunctional 3,4-dihydroxy-2-b 6e-89
TIGR00506199 TIGR00506, ribB, 3,4-dihydroxy-2-butanone 4-phosph 8e-86
PRK03353217 PRK03353, ribB, 3,4-dihydroxy-2-butanone 4-phospha 8e-85
PRK12485 369 PRK12485, PRK12485, bifunctional 3,4-dihydroxy-2-b 2e-79
PRK01792214 PRK01792, ribB, 3,4-dihydroxy-2-butanone 4-phospha 5e-76
PRK00910218 PRK00910, ribB, 3,4-dihydroxy-2-butanone 4-phospha 3e-65
PRK00014230 PRK00014, ribB, 3,4-dihydroxy-2-butanone 4-phospha 4e-63
PRK09318 387 PRK09318, PRK09318, bifunctional 3,4-dihydroxy-2-b 2e-42
PRK05773219 PRK05773, PRK05773, 3,4-dihydroxy-2-butanone 4-pho 1e-22
pfam00925 169 pfam00925, GTP_cyclohydro2, GTP cyclohydrolase II 1e-07
COG0807 193 COG0807, RibA, GTP cyclohydrolase II [Coenzyme met 8e-07
cd00641 193 cd00641, GTP_cyclohydro2, GTP cyclohydrolase II (R 1e-06
>gnl|CDD|215445 PLN02831, PLN02831, Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase Back     alignment and domain information 
 Score =  542 bits (1399), Expect = 0.0
 Identities = 216/275 (78%), Positives = 243/275 (88%), Gaps = 1/275 (0%)

Query: 74  DTIGFGTLGAEITPKTSDFFPNDDEFDLDRPTKGFASISEAIEDIRQGKLVIVVDDEDRE 133
           D+  FGTL AEITP T DFF +D E D DRPT+GF+SI+EA+EDIRQGK V+VVDDEDRE
Sbjct: 1   DSASFGTLAAEITPTTDDFFVSDAEGDPDRPTEGFSSIAEALEDIRQGKFVVVVDDEDRE 60

Query: 134 NEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFT 193
           NEGDLIMAASLVTPEAMAF+V+HG+GIVCVSMKGEDL+RL LPLMV  K+NEEK+ TAFT
Sbjct: 61  NEGDLIMAASLVTPEAMAFLVKHGSGIVCVSMKGEDLDRLRLPLMVPSKENEEKMATAFT 120

Query: 194 VSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEA 253
           V+VDAK+GTTTGVSA+DRAKT+LALA  DSKPEDF RPGHIFPL+YREGGVLKRAGHTEA
Sbjct: 121 VTVDAKHGTTTGVSASDRAKTILALASPDSKPEDFRRPGHIFPLRYREGGVLKRAGHTEA 180

Query: 254 SVDLAVLAGLEPVAVLCEIVDD-DGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRL 312
           +VDLAVLAGL PV VLCEIV+D DGSMARLP+LR+FA+   LKIISIADLIRYRRKR++L
Sbjct: 181 AVDLAVLAGLPPVGVLCEIVNDEDGSMARLPQLRKFAEEHGLKIISIADLIRYRRKREKL 240

Query: 313 VELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVK 347
           VE  A A +PT WG F A+CYRS LDGIEHIA VK
Sbjct: 241 VERTAVARLPTKWGLFTAYCYRSKLDGIEHIAFVK 275

Length = 450
>gnl|CDD|181774 PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional Back     alignment and domain information
>gnl|CDD|236465 PRK09319, PRK09319, bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional Back     alignment and domain information
>gnl|CDD|237587 PRK14019, PRK14019, bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional Back     alignment and domain information
>gnl|CDD|216197 pfam00926, DHBP_synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase Back     alignment and domain information
>gnl|CDD|223186 COG0108, RibB, 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|181775 PRK09314, PRK09314, bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional Back     alignment and domain information
>gnl|CDD|232999 TIGR00506, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase Back     alignment and domain information
>gnl|CDD|235119 PRK03353, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|171535 PRK12485, PRK12485, bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional Back     alignment and domain information
>gnl|CDD|167278 PRK01792, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|179162 PRK00910, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|134031 PRK00014, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|236464 PRK09318, PRK09318, bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional Back     alignment and domain information
>gnl|CDD|235601 PRK05773, PRK05773, 3,4-dihydroxy-2-butanone 4-phosphate synthase; Validated Back     alignment and domain information
>gnl|CDD|216196 pfam00925, GTP_cyclohydro2, GTP cyclohydrolase II Back     alignment and domain information
>gnl|CDD|223878 COG0807, RibA, GTP cyclohydrolase II [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|238348 cd00641, GTP_cyclohydro2, GTP cyclohydrolase II (RibA) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 348
PLN02831 450 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy- 100.0
PRK09314339 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate 100.0
PRK12485 369 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate 100.0
COG0108203 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase 100.0
PRK09319 555 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate 100.0
PRK00910218 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase 100.0
PRK09311 402 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate 100.0
PRK01792214 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase 100.0
PRK14019 367 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate 100.0
PRK09318 387 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate 100.0
PRK00014230 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase 100.0
TIGR00506199 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase 100.0
PF00926194 DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphat 100.0
PRK03353217 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase 100.0
PRK05773219 3,4-dihydroxy-2-butanone 4-phosphate synthase; Val 100.0
KOG1284357 consensus Bifunctional GTP cyclohydrolase II/3,4-d 100.0
PRK08815 375 GTP cyclohydrolase; Provisional 100.0
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase Back     alignment and domain information 
Probab=100.00  E-value=6e-81  Score=629.04  Aligned_cols=274  Identities=79%  Similarity=1.198  Sum_probs=266.8

Q ss_pred             CccccccccccccccccCCCCCCCCCCCCCCCCCcccHHHHHHHHHCCcEEEEEeCCCCCCceeEEEEcCCCCHHHHHHH
Q 018982           74 DTIGFGTLGAEITPKTSDFFPNDDEFDLDRPTKGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFI  153 (348)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ie~Ai~aLr~G~pVvV~Dde~REnEgdLV~aAe~~T~e~vafm  153 (348)
                      |+++||||.|+++|++++||.++.+.+++.+++.|++|++||++||+|+||||+||++||||||||+|||.+|++.|+||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~ai~~lr~G~~Viv~Dd~~rEnegdLv~aAe~~t~e~v~fm   80 (450)
T PLN02831          1 DSASFGTLAAEITPTTDDFFVSDAEGDPDRPTEGFSSIAEALEDIRQGKFVVVVDDEDRENEGDLIMAASLVTPEAMAFL   80 (450)
T ss_pred             CCccccccccCCcccccccccccccccccCcccccCcHHHHHHHHHCCCeEEEEeCCCCCCceeEEEEchhCCHHHHHHH
Confidence            57899999999999999999999999999997789999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCceEeecCHHHHHhcCCCccccCCCCCCCCccceEEEeeccCCCCCCCChHHHHHHHHHHhcCCCCCCCCCCCCC
Q 018982          154 VRHGTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGH  233 (348)
Q Consensus       154 ~~~a~Glicvalt~~ra~~LgLp~m~~~~~n~~~~~taFtVsVDa~~gttTGISA~DRA~TIr~LAdp~s~~~Df~rPGH  233 (348)
                      ++|++|++|++|++++|++|+||+|+....|.+.++++||||||++.|++|||||.|||.|||.||+|.++|.||++|||
T Consensus        81 ~~~~~GliC~~lt~~ra~~L~Lp~m~~~~~n~~~~~t~ftvsVd~~~g~~TGISa~dRa~Tir~lad~~~~~~df~~PGH  160 (450)
T PLN02831         81 VKHGSGIVCVSMKGEDLDRLRLPLMVPSKENEEKMATAFTVTVDAKHGTTTGVSASDRAKTILALASPDSKPEDFRRPGH  160 (450)
T ss_pred             HHhCCCceEEecCHHHHhhcCCCcccccccCCcccCCCceEEEecCCCcccccchHHHHHHHHHHhCcCCChhhcCCCCc
Confidence            99999999999999999999999998754577778899999999999999999999999999999999999999999999


Q ss_pred             cCccccccCCccccCChhHHHHHHHHHcCCCCcEEEEEEecC-CCCcCChhHHHHHHHhCCCceeeHHHHHHHHHHcccc
Q 018982          234 IFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDD-DGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRL  312 (348)
Q Consensus       234 VfPL~a~~gGvl~R~GhTEAAVdLarLAGL~PaaVi~ell~d-dG~mar~~~l~~fA~~h~L~ivsi~DLi~yr~~~e~l  312 (348)
                      ||||++++|||++|+|||||||||||||||.|++|||||+++ ||+|++.+++.+||++|+||+|+|+|||+||.+.+++
T Consensus       161 vfPL~a~~ggvl~R~GhtEaavdLarlAgl~Paavi~Ei~~~~dG~m~~~~~~~~fA~~h~L~~v~i~dli~yr~~~e~l  240 (450)
T PLN02831        161 IFPLRYREGGVLKRAGHTEAAVDLAVLAGLPPVGVLCEIVNDEDGSMARLPQLRKFAEEHGLKIISIADLIRYRRKREKL  240 (450)
T ss_pred             ccceeecccCccCCCChHHHHHHHHHHcCCCceEEEEEeccCCCCCccChHHHHHHHHHcCCcEEEHHHHHHHHhhcccc
Confidence            999999999999999999999999999999999999999995 9999999999999999999999999999999999999


Q ss_pred             ccccceeeccCCcccEEEEEEEeCCCCceEEEEEe
Q 018982          313 VELAAAAPIPTMWGPFKAHCYRSLLDGIEHIAMVK  347 (348)
Q Consensus       313 Verva~a~LPT~~G~F~~~~Yr~~~~g~EHVALVk  347 (348)
                      |++++++.+||+||+|++++|++..++.||+|||+
T Consensus       241 V~rv~~~~lpT~~G~F~~~~yr~~~~g~eHlALv~  275 (450)
T PLN02831        241 VERTAVARLPTKWGLFTAYCYRSKLDGIEHIAFVK  275 (450)
T ss_pred             ccccceeeeecCCCCEEEEEEEeCCCCeEEEEEEe
Confidence            99999999999999999999999999999999986

>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional Back     alignment and domain information
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional Back     alignment and domain information
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism] Back     alignment and domain information
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional Back     alignment and domain information
>PRK00910 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional Back     alignment and domain information
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional Back     alignment and domain information
>PRK01792 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional Back     alignment and domain information
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional Back     alignment and domain information
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional Back     alignment and domain information
>PRK00014 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional Back     alignment and domain information
>TIGR00506 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase Back     alignment and domain information
>PF00926 DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro: IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase (4 Back     alignment and domain information
>PRK03353 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional Back     alignment and domain information
>PRK05773 3,4-dihydroxy-2-butanone 4-phosphate synthase; Validated Back     alignment and domain information
>KOG1284 consensus Bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2butanone-4-phosphate synthase [Coenzyme transport and metabolism] Back     alignment and domain information
>PRK08815 GTP cyclohydrolase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query348
1iez_A217 Solution Structure Of 3,4-Dihydroxy-2-Butanone 4-Ph 8e-56
1g57_A217 Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Pho 9e-56
3lqu_A217 Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Pho 5e-55
3h07_A220 Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Pho 5e-55
3mk5_A212 Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Pho 2e-53
3mgz_A206 Crystal Structure Of Dhbps Domain Of Bi-Functional 2e-53
1tks_A204 Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Pho 1e-51
1k49_A233 Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Pho 1e-44
1pvw_A227 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From 3e-26
1pvy_A227 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From 4e-25
>pdb|1IEZ|A Chain A, Solution Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase Of Riboflavin Biosynthesis Length = 217 Back     alignment and structure 
Iteration: 1

 Score =  214 bits (544), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 99/204 (48%), Positives = 141/204 (69%), Gaps = 2/204 (0%)
Query: 108 FASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKG 167
           F  +  A+  +R+G+ V+V+DDEDRENEGD+I  A  +T E MA  +RHG+GIVC+ +  
Sbjct: 13  FERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITE 72
Query: 168 EDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPED 227
           +  ++L+LP+MV  ++N     T FTV+++A  G TTGVSA DR  TV A     +KP D
Sbjct: 73  DRRKQLDLPMMV--ENNTSAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSD 130
Query: 228 FNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQ 287
            NRPGH+FPL+ + GGVL R GHTEA++DL  LAG +P  VLCE+ +DDG+MAR P+  +
Sbjct: 131 LNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPECIE 190
Query: 288 FAQTENLKIISIADLIRYRRKRDR 311
           FA   N+ +++I DL+ YR+  +R
Sbjct: 191 FANKHNMALVTIEDLVAYRQAHER 214
>pdb|1G57|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase Length = 217 Back     alignment and structure
>pdb|3LQU|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase Complexed With Ribulose-5 Phosphate Length = 217 Back     alignment and structure
>pdb|3H07|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From Yersinia Pestis Co92 Length = 220 Back     alignment and structure
>pdb|3MK5|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase Domain From Mycobacterium Tuberculosis With Sulfate And Zinc At Ph 4.00 Length = 212 Back     alignment and structure
>pdb|3MGZ|A Chain A, Crystal Structure Of Dhbps Domain Of Bi-Functional DhbpsGTP Cyclohydrolase Ii From Mycobacterium Tuberculosis At Ph 4.0 Length = 206 Back     alignment and structure
>pdb|1TKS|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase Of Candida Albicans Length = 204 Back     alignment and structure
>pdb|1K49|A Chain A, Crystal Structure Of 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase (Cation Free Form) Length = 233 Back     alignment and structure
>pdb|1PVW|A Chain A, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M. Jannaschii Length = 227 Back     alignment and structure
>pdb|1PVY|A Chain A, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M. Jannaschii In Complex With Ribulose 5-Phosphate Length = 227 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query348
1g57_A217 DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphat 1e-133
1tks_A204 3,4-dihydroxy-2-butanone 4-phosphate synthase; rib 1e-132
3mio_A206 DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphat 1e-131
1k4i_A233 3,4-dihydroxy-2-butanone 4-phosphate synthase; rib 1e-131
1snn_A227 DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphat 1e-119
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-11
2bz1_A 196 GTP cyclohydrolase II; riboflavin biosynthesis, ca 2e-09
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A Length = 217 Back     alignment and structure
 Score =  378 bits (974), Expect = e-133
 Identities = 100/217 (46%), Positives = 142/217 (65%), Gaps = 2/217 (0%)

Query: 97  DEFDLDRPTKGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRH 156
            +  L      F  +  A+  +R+G+ V+V+DDEDRENEGD+I  A  +T E MA  +RH
Sbjct: 2   AQTLLSSFGTPFERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRH 61

Query: 157 GTGIVCVSMKGEDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVL 216
           G+GIVC+ +  +  ++L+LP+MV +  N     T FTV+++A  G TTGVSA DR  TV 
Sbjct: 62  GSGIVCLCITEDRRKQLDLPMMVEN--NTSAYGTGFTVTIEAAEGVTTGVSAADRITTVR 119

Query: 217 ALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDD 276
           A     +KP D NRPGH+FPL+ + GGVL R GHTEA++DL  LAG +P  VLCE+ +DD
Sbjct: 120 AAIADGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDD 179

Query: 277 GSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLV 313
           G+MAR P+  +FA   N+ +++I DL+ YR+  +R  
Sbjct: 180 GTMARAPECIEFANKHNMALVTIEDLVAYRQAHERKA 216
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A* Length = 204 Back     alignment and structure
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} PDB: 3mgz_A 3mk5_A Length = 206 Back     alignment and structure
>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesi antimicrobial target, structure-based design, isomerase; 0.98A {Magnaporthe grisea} SCOP: d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A Length = 233 Back     alignment and structure
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A Length = 227 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2bz1_A GTP cyclohydrolase II; riboflavin biosynthesis, catalytic zinc, magnesium; 1.54A {Escherichia coli} SCOP: c.144.1.1 PDB: 2bz0_A Length = 196 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query348
1k4i_A233 3,4-dihydroxy-2-butanone 4-phosphate synthase; rib 100.0
3mio_A206 DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphat 100.0
1tks_A204 3,4-dihydroxy-2-butanone 4-phosphate synthase; rib 100.0
1snn_A227 DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphat 100.0
1g57_A217 DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphat 100.0
>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesi antimicrobial target, structure-based design, isomerase; 0.98A {Magnaporthe grisea} SCOP: d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A Back     alignment and structure
Probab=100.00  E-value=3.9e-77  Score=554.00  Aligned_cols=208  Identities=48%  Similarity=0.736  Sum_probs=201.2

Q ss_pred             CCCcccHHHHHHHHHCCcEEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhcCCceEeecCHHHHHhcCCCccccCCCC
Q 018982          105 TKGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDN  184 (348)
Q Consensus       105 ~~~~~~Ie~Ai~aLr~G~pVvV~Dde~REnEgdLV~aAe~~T~e~vafm~~~a~Glicvalt~~ra~~LgLp~m~~~~~n  184 (348)
                      .+.|++|++||++||+|++|||+||++||||||||+|||.+||+.||||++|++|+||++|++++|++|+||+|+..  |
T Consensus         9 ~~~~~~ie~Ai~alr~G~~Viv~DdedREnEgDLi~aAe~~T~e~i~fm~r~~~GliC~~lt~e~~~~L~Lp~Mv~~--n   86 (233)
T 1k4i_A            9 KSNFDAIPDVIQAFKNGEFVVVLDDPSRENEADLIIAAESVTTEQMAFMVRHSSGLICAPLTPERTTALDLPQMVTH--N   86 (233)
T ss_dssp             ---CCCHHHHHHHHHTTCCEEEECCTTTTCCEEEEEEGGGCCHHHHHHHHHHBCSCCEEEECHHHHHHTTCCBSCSS--C
T ss_pred             CCchhHHHHHHHHHHCCCeEEEEeCCCCCcceeEEEEhhhCCHHHHHHHHHcCCCCEEEEcCHHHHhhCCCcccccc--c
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999987  8


Q ss_pred             CCCCccceEEEeeccC-CCCCCCChHHHHHHHHHHhcCCCCCCCCCCCCCcCccccccCCccccCChhHHHHHHHHHcCC
Q 018982          185 EEKLCTAFTVSVDAKY-GTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGL  263 (348)
Q Consensus       185 ~~~~~taFtVsVDa~~-gttTGISA~DRA~TIr~LAdp~s~~~Df~rPGHVfPL~a~~gGvl~R~GhTEAAVdLarLAGL  263 (348)
                      ++.++|+|||||||++ |++|||||+||+.||+.|++++++|.||++|||||||++++|||++|+|||||||||||||||
T Consensus        87 ~~~~~TaFTVsVda~~~g~tTGISA~DRa~Tir~la~~~~~p~df~rPGHvfPL~A~~GGVl~R~GHTEAaVDLarLAGl  166 (233)
T 1k4i_A           87 ADPRGTAYTVSVDAEHPSTTTGISAHDRALACRMLAAPDAQPSHFRRPGHVFPLRAVAGGVRARRGHTEAGVELCRLAGK  166 (233)
T ss_dssp             CCSSCCCBBCCEEECSTTCSSSCSHHHHHHHHHHHHCTTCCGGGEEEEEEEEEEECCTTHHHHCCSHHHHHHHHHHHTTC
T ss_pred             CCCCCCCeEEEEEcccCCCCCCcCHHHHHHHHHHHhCCCCCHHHcCCCCccceeeecCCCeeccCChHHHHHHHHHHcCC
Confidence            8999999999999998 999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEEecC-----------CCCcCChhHHHHHHHhCCCceeeHHHHHHHHHHcccccc
Q 018982          264 EPVAVLCEIVDD-----------DGSMARLPKLRQFAQTENLKIISIADLIRYRRKRDRLVE  314 (348)
Q Consensus       264 ~PaaVi~ell~d-----------dG~mar~~~l~~fA~~h~L~ivsi~DLi~yr~~~e~lVe  314 (348)
                      .|++|||||+++           ||+|||++++.+||++|+||+|+|+|||+||+++|++|+
T Consensus       167 ~PagVicEi~~~~~~~~~~~~~~dG~mar~~~l~~fA~~h~L~iitI~dLi~yr~~~e~~v~  228 (233)
T 1k4i_A          167 RPVAVISEIVDDGQEVEGRAVRAAPGMLRGDECVAFARRWGLKVCTIEDMIAHVEKTEGKLE  228 (233)
T ss_dssp             CSBEEEEEBEECCEECTTSSCEESCEECCHHHHHHHHHHTTCEEEEHHHHHHHHHHHHCCC-
T ss_pred             CceEEEEEeCCCcccccccccCCCCCcCCHHHHHHHHHHcCCcEEEHHHHHHHHHhcCCeec
Confidence            999999999999           999999999999999999999999999999999998874
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} SCOP: d.115.1.0 PDB: 3mgz_A 3mk5_A Back     alignment and structure
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A* Back     alignment and structure
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A Back     alignment and structure
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 348
d1g57a_209 d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphat 1e-79
d1snna_219 d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphat 2e-79
d1k4ia_216 d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphat 2e-76
d1tksa_202 d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphat 1e-75
d2bz1a1 174 c.144.1.1 (A:1-174) GTP cyclohydrolase II, RibA {E 2e-07
>d1g57a_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Escherichia coli [TaxId: 562]} Length = 209 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: YrdC/RibB
superfamily: YrdC/RibB
family: 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB
domain: 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB
species: Escherichia coli [TaxId: 562]

 Score =  240 bits (613), Expect = 1e-79
 Identities = 97/203 (47%), Positives = 139/203 (68%), Gaps = 2/203 (0%)

Query: 108 FASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKG 167
           F  +  A+  +R+G+ V+V+DDEDRENEGD+I  A  +T E MA  +RHG+GIVC+ +  
Sbjct: 9   FERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITE 68

Query: 168 EDLERLELPLMVNHKDNEEKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPED 227
           +  ++L+LP+MV +  +     T FTV+++A  G TTGVSA DR  TV A     +KP D
Sbjct: 69  DRRKQLDLPMMVENNTS--AYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSD 126

Query: 228 FNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEPVAVLCEIVDDDGSMARLPKLRQ 287
            NRPGH+FPL+ + GGVL R GHTEA++DL  LAG +P  VLCE+ +DDG+MAR P+  +
Sbjct: 127 LNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPECIE 186

Query: 288 FAQTENLKIISIADLIRYRRKRD 310
           FA   N+ +++I DL+ YR+  +
Sbjct: 187 FANKHNMALVTIEDLVAYRQAHE 209
>d1snna_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} Length = 219 Back     information, alignment and structure
>d1k4ia_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Magnaporthe grisea [TaxId: 148305]} Length = 216 Back     information, alignment and structure
>d1tksa_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Candida albicans [TaxId: 5476]} Length = 202 Back     information, alignment and structure
>d2bz1a1 c.144.1.1 (A:1-174) GTP cyclohydrolase II, RibA {Escherichia coli [TaxId: 562]} Length = 174 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query348
d1g57a_209 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHB 100.0
d1tksa_202 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHB 100.0
d1k4ia_216 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHB 100.0
d1snna_219 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHB 100.0
>d1g57a_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: YrdC/RibB
superfamily: YrdC/RibB
family: 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB
domain: 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.1e-72  Score=514.24  Aligned_cols=203  Identities=48%  Similarity=0.869  Sum_probs=194.3

Q ss_pred             CCcccHHHHHHHHHCCcEEEEEeCCCCCCceeEEEEcCCCCHHHHHHHHHhcCCceEeecCHHHHHhcCCCccccCCCCC
Q 018982          106 KGFASISEAIEDIRQGKLVIVVDDEDRENEGDLIMAASLVTPEAMAFIVRHGTGIVCVSMKGEDLERLELPLMVNHKDNE  185 (348)
Q Consensus       106 ~~~~~Ie~Ai~aLr~G~pVvV~Dde~REnEgdLV~aAe~~T~e~vafm~~~a~Glicvalt~~ra~~LgLp~m~~~~~n~  185 (348)
                      ..|++|++||++||+|+||||+||++||||||||++||.+|++.|+||++|++|++|++|++++|++||||+|+..  |.
T Consensus         7 ~~~~~ie~ai~alk~G~~Viv~Dd~~RE~EgDlv~~Ae~~t~e~i~fm~~~~~GliC~a~~~~~~~~L~Lp~m~~~--~~   84 (209)
T d1g57a_           7 TPFERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMVEN--NT   84 (209)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEEEC----CCCEEEEEETTTCCHHHHHHHHHHBCSCCEEEECHHHHHHTTCCBSCSS--CC
T ss_pred             CchhhHHHHHHHHHCCCEEEEEECCCCCCcccEEEEHHHCCHHHHHHHHHhCCCCEEEcccHHHHhcCCCCCcccc--cc
Confidence            3478899999999999999999999999999999999999999999999999999999999999999999999987  88


Q ss_pred             CCCccceEEEeeccCCCCCCCChHHHHHHHHHHhcCCCCCCCCCCCCCcCccccccCCccccCChhHHHHHHHHHcCCCC
Q 018982          186 EKLCTAFTVSVDAKYGTTTGVSANDRAKTVLALACRDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAVLAGLEP  265 (348)
Q Consensus       186 ~~~~taFtVsVDa~~gttTGISA~DRA~TIr~LAdp~s~~~Df~rPGHVfPL~a~~gGvl~R~GhTEAAVdLarLAGL~P  265 (348)
                      +.++++|+||||+++|++|||||.||+.||+.|+++++.|.||++|||||||++++|||++|+||||||||||+|||+.|
T Consensus        85 ~~~~~~ftvsvd~~~g~tTGISa~dRa~Tir~l~~~~~~~~df~~PGHv~pL~a~~gGv~~R~GHTEaavdL~~lAGl~P  164 (209)
T d1g57a_          85 SAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKP  164 (209)
T ss_dssp             CTTCCCBBSCEEESSSCSSSCSHHHHHHHHHHHHSTTCCGGGEEEEEEEEEEECCTTGGGTCCSHHHHHHHHHHHTTSCS
T ss_pred             cccCCcceEEEEecCCccccccHHHHHHHHHHhhccCCCHHHhcCCceeceeeeccCCccccchHHHHHHHHHHhcCCCC
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEecCCCCcCChhHHHHHHHhCCCceeeHHHHHHHHHHcc
Q 018982          266 VAVLCEIVDDDGSMARLPKLRQFAQTENLKIISIADLIRYRRKRD  310 (348)
Q Consensus       266 aaVi~ell~ddG~mar~~~l~~fA~~h~L~ivsi~DLi~yr~~~e  310 (348)
                      ++|||||+++||+|++.+++++||++|+||+|+|+|||+||+++|
T Consensus       165 ~avi~Eil~~dG~~~~~~~~~~fA~~~~l~~isi~dli~yr~~~e  209 (209)
T d1g57a_         165 AGVLCELTNDDGTMARAPECIEFANKHNMALVTIEDLVAYRQAHE  209 (209)
T ss_dssp             CEEEEEBBCTTSSBCCHHHHHHHHHHTTCEEEEHHHHHHHHHHHC
T ss_pred             eEEEEEEecCCCcccCHHHHHHHHHHcCCCEEEHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999865
>d1tksa_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Candida albicans [TaxId: 5476]} Back     information, alignment and structure
>d1k4ia_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Magnaporthe grisea [TaxId: 148305]} Back     information, alignment and structure
>d1snna_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure