Citrus Sinensis ID: 019002

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------
Protein Sequence
MAGLLAWAADVVKAHKDDDDDEDAINSSIPLVFTEEQQKYVRELDQKAASLSRLIRDLRLRLPPPDISQRLPHLHAHSLAYSAALSQQLSSHSSTREQTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALRSDIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLRRRIEGSNVEEDTARNRLRRVTSDRGSASTDYLVDDSQKLPYHTGGNETLYKLMLLRSSFVLYILALHIAVFIKISF
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHcccccccHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccccccHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHcccccccccccccHHHcccEEccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHcccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHEHHcc
Coil and Loop (DISEMBL)
MAGLLAWAADVVKahkdddddedainssiplvfTEEQQKYVRELDQKAASLSRLIRDLrlrlpppdisqrlphlhaHSLAYSAALSQQlsshsstrEQTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTamntsksgkftesiladkagvdtdALRSDIAEKLEVKKKELSSMEERVQELEKKWAQVQNDalkqpspaqREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLRrriegsnveedTARNRLRrvtsdrgsastdylvddsqklpyhtggneTLYKLMLLRSSFVLYILALHIAVFIKISF
Flexible Loop (DISEMBL)
MAGLLAWAADVVKahkdddddedainSSIPLVFTEEQQKYVRELDQKAASLSRLIRDLRLRLPPPDISQRLPHLHAHSLAYSAALSQQLSSHSSTREQTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNtsksgkftesiladkagvdtdALRSDIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEglvseihlkekeletlnglrrriegsnveedtarnrlrrvtsdrgsastdylvddsqklpyhTGGNETLYKLMLLRSSFVLYILALHIAVFIKISF
Low Complexity Region (SEG)
MAGLLawaadvvkahkdddddedaINSSIPLVFTEEQQKYVRELDQKAAslsrlirdlrlrlpppdisQRLPhlhahslaysaalsqqlsshssTREQTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALRSDIAeklevkkkelssmeeRVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLRRRIEGSNVEEDTARNRLRRVTSDRGSASTDYLVDDSQKLPYHTGGNETLYKLMLLRSSFVLYILALHIAVFIKISF
Disordered region (IsUnstruct)
***LLAWAADVV****************IPLVFT*****YV***********RLIRDLRL********************************************************************************************************************************************************************************************************************************************************KLPYHTGGNETLYKLMLLRSSFVLYILALHIAVFIKI**
Disordered Region (DISOPRED)
*AGLLAWAA*************************************************************************************************************************************************************************************************************************************************************************************************************************LMLLRSSFVLYILALHIAVFIKISF
Disordered Region (DISEMBL)
MAGLLAWAADVVKAHKDDDDDEDAINSSIPLVFTEEQQKYVRELDQKAASLSRLIRDLRLRLPPPDISQRLPHLHAHSLAYSAA****************LREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALRSDIAEKLEVKKKE***********EKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLRRRIEGSNVEEDTARNRLRRVTSDRGSASTDYLVDDSQKLPYHTGGNETLYKLMLLRSSFVLYILALHIAVFIKISF
Disordered Region (DISPRO)
****LAWAADVVKAH******EDAINSSIPLVFTEEQQKYVRELDQKAASLSRLIRDLRLRLPPPDISQRLPHLHAHSLAYSAALSQQLSSHSSTREQTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNT*******************DALRSDIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLRRRIE*******************************SQKLPYHTGGNETLYKLMLLRSSFVLYILALHIAVFIKISF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGLLAWAADVVKAHKDDDDDEDAINSSIPLVFTEEQQKYxxxxxxxxxxxxxxxxxxxxxLPPPDISQRLPHLHAHSLAYSAALSQQLSSHSSTREQTQLREVTLQEExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSKSGKFTESILADKAGVDTDALxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLRRRIEGSNVEEDTARNRLRRVTSDRGSASTDYLVDDSQKLPYHTGGNETLYKLMLLRSSFVLYILALHIAVFIKISF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	347
224127592	346	predicted protein [Populus trichocarpa]	0.982	0.985	0.664	1e-124
224077532	346	predicted protein [Populus trichocarpa]	0.979	0.982	0.643	1e-118
255586634	350	conserved hypothetical protein [Ricinus	0.997	0.988	0.632	1e-112
225451937	332	PREDICTED: uncharacterized protein LOC10	0.942	0.984	0.622	1e-111
15237209	348	uncharacterized protein [Arabidopsis tha	0.985	0.982	0.603	1e-108
297807611	348	hypothetical protein ARALYDRAFT_488437 [	0.985	0.982	0.606	1e-105
90657652	348	hypothetical protein [Cleome spinosa]	0.988	0.985	0.599	1e-103
449531998	349	PREDICTED: uncharacterized LOC101206785	0.994	0.988	0.606	1e-100
449455797	349	PREDICTED: uncharacterized protein LOC10	0.994	0.988	0.603	1e-99
356573659	328	PREDICTED: uncharacterized protein LOC10	0.939	0.993	0.584	3e-98

>gi|224127592|ref|XP_002329316.1| predicted protein [Populus trichocarpa] gi|222870770|gb|EEF07901.1| predicted protein [Populus trichocarpa]

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 234/352 (66%), Positives = 279/352 (79%), Gaps = 11/352 (3%)

Query: 1   MAGLLAWAADVVKAHKDDDDDEDAINSSIPLVFTEEQQKYVRELDQKAASLSRLIRDLRL 60
           MAGLLAWAADVV AH ++ + E+     IP+VFT++QQKYV+ELD KA+SLSR I+DLRL
Sbjct: 1   MAGLLAWAADVVGAHGNNHELEE---DRIPIVFTDDQQKYVQELDSKASSLSRTIQDLRL 57

Query: 61  RLPPPDISQRLPHLHAHSLAYSAALSQQLSSHSSTREQTQLREVTLQEENAAYEKAISSC 120
           RLPPPDISQRLPHL AHS+A +AAL+ QL++HS+T+EQ QLREVTLQEENA YEKAI +C
Sbjct: 58  RLPPPDISQRLPHLLAHSIASNAALALQLNAHSATKEQAQLREVTLQEENAEYEKAILNC 117

Query: 121 ESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILAD----KA 176
           E+ I E+IQEAD L RKL+EMDE E  L  EL+  +TAM+  + G   ES+ A     +A
Sbjct: 118 ENNIHERIQEADLLLRKLQEMDETEQALMEELENAETAMDAGQHGNSGESVNASETAVEA 177

Query: 177 GVDTDALRSDIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQL 236
           G D +A +SDI EKL+ KKKELSS+EE VQ L+K+W QVQ +ALKQP+PAQREK+L+KQL
Sbjct: 178 GSDAEAAKSDILEKLDNKKKELSSLEEIVQGLDKRWMQVQENALKQPAPAQREKLLDKQL 237

Query: 237 HSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLRRRIEGSNVEEDTARNRLRRVTSDRG 296
           HSLIEQL  KQ QAEGLVSEIHLKE ELE LNGLRRR+E SNVE +TARNR  R TSD+G
Sbjct: 238 HSLIEQLAAKQAQAEGLVSEIHLKEMELERLNGLRRRLESSNVEGNTARNRFGRSTSDKG 297

Query: 297 SASTDYLVDDSQKLPYHTGG-NETLYKLMLLRSSFVLYILALHIAVFIKISF 347
           SA  DY+VD   KLPY TGG  E   +LM LRS+FV+YIL LHI VFIK+SF
Sbjct: 298 SAFADYIVD---KLPYSTGGRTEHQQRLMFLRSAFVIYILFLHIVVFIKLSF 346

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077532|ref|XP_002305289.1| predicted protein [Populus trichocarpa] gi|222848253|gb|EEE85800.1| predicted protein [Populus trichocarpa]

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 227/353 (64%), Positives = 279/353 (79%), Gaps = 13/353 (3%)

Query: 1   MAGLLAWAADVVKAHKDDDD-DEDAINSSIPLVFTEEQQKYVRELDQKAASLSRLIRDLR 59
           MAGLLAWAADVV AH ++ +  ED     IP+V TE+QQKYV+ELD KA+SLSR I+ LR
Sbjct: 1   MAGLLAWAADVVGAHGNNHELSED----RIPIVLTEDQQKYVQELDSKASSLSRSIQGLR 56

Query: 60  LRLPPPDISQRLPHLHAHSLAYSAALSQQLSSHSSTREQTQLREVTLQEENAAYEKAISS 119
           LRLP PDISQRLPH+ AHSLA +AAL+ QL++HS+T+EQ QLR+VTLQEENAAYEKAI +
Sbjct: 57  LRLPSPDISQRLPHILAHSLASNAALALQLNAHSATKEQAQLRKVTLQEENAAYEKAILN 116

Query: 120 CESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILAD----K 175
           CE+++QE++QE D L +KL+EMDE E  L  EL+  +TA++  +SGK  ES++A     +
Sbjct: 117 CENKLQERMQETDLLLQKLQEMDETEQTLMEELENAETALDARQSGKSVESVVASETTAE 176

Query: 176 AGVDTDALRSDIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQ 235
           AG D +A +S I EKL+ KKKELSSMEE VQ+LEK+W QVQ + LKQP+PAQREK+L+KQ
Sbjct: 177 AGPDAEAEKSAILEKLDNKKKELSSMEEIVQDLEKRWVQVQENELKQPTPAQREKLLDKQ 236

Query: 236 LHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLRRRIEGSNVEEDTARNRLRRVTSDR 295
           LHSL+EQL  KQ QAEGLV EIHLKE ELE L GL R+IE SNVE +TARNR  R TS++
Sbjct: 237 LHSLMEQLAAKQAQAEGLVGEIHLKEMELERLKGLWRKIESSNVEGNTARNRFGRSTSEK 296

Query: 296 GSASTDYLVDDSQKLPYHTGG-NETLYKLMLLRSSFVLYILALHIAVFIKISF 347
           GSASTDY+VD   KLPY TGG  E   +LMLLRS+FV+YIL L+I V IK+SF
Sbjct: 297 GSASTDYMVD---KLPYSTGGRTEHQQRLMLLRSAFVMYILFLNIVVLIKLSF 346

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586634|ref|XP_002533948.1| conserved hypothetical protein [Ricinus communis] gi|223526079|gb|EEF28434.1| conserved hypothetical protein [Ricinus communis]

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 222/351 (63%), Positives = 274/351 (78%), Gaps = 5/351 (1%)

Query: 1   MAGLLAWAADVVKAHKDDDDDEDAINSSIPLVFTEEQQKYVRELDQKAASLSRLIRDLRL 60
           MAGLL WAADVV  H   + +E   + +IPL+FTE+Q KYV+ELDQKA+SLSR I+DLRL
Sbjct: 1   MAGLLQWAADVVGGHGGGNSNE-LDDDAIPLIFTEDQHKYVQELDQKASSLSRSIQDLRL 59

Query: 61  RLPPPDISQRLPHLHAHSLAYSAALSQQLSSHSSTREQTQLREVTLQEENAAYEKAISSC 120
           RLPPPDISQRLPHL AHSLA +AAL+ QL++HS+T+EQ QLREVTL EEN AYEKAIS+C
Sbjct: 60  RLPPPDISQRLPHLLAHSLASNAALALQLNAHSATKEQAQLREVTLLEENVAYEKAISNC 119

Query: 121 ESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILA---DKAG 177
           E+ +QEK+QEAD L++KL+EMD  E  L  EL+  ++ ++T++SG+  ESI++   D+AG
Sbjct: 120 ENNLQEKMQEADLLQKKLQEMDHYEKQLRQELENTESTLDTNQSGRPGESIVSETEDEAG 179

Query: 178 VDTDALRSDIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLH 237
            +T    S + EKLE KK E+SSME+ VQ LEKKWA VQ+  LKQP+P QREK+L+KQLH
Sbjct: 180 SNTKFENSTLLEKLENKKTEMSSMEDIVQNLEKKWAHVQHSTLKQPTPVQREKILDKQLH 239

Query: 238 SLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLRRRIEGSNVEEDTARNRLRRVTSDRGS 297
           SLIEQL  KQ QAEGLV+EIHLKE ELE LNGL RR+E SN+E +TARNR  R  SD+GS
Sbjct: 240 SLIEQLAAKQAQAEGLVNEIHLKEIELERLNGLWRRLESSNLEINTARNRFGRSNSDKGS 299

Query: 298 ASTDYLVDDSQKLPYHTGG-NETLYKLMLLRSSFVLYILALHIAVFIKISF 347
           +S+  L   + KLPY T G  E   +LMLLRS+FVLYIL LH+ VFIKISF
Sbjct: 300 SSSSSLEYIADKLPYSTSGRTEQQQRLMLLRSAFVLYILLLHVLVFIKISF 350

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451937|ref|XP_002282956.1| PREDICTED: uncharacterized protein LOC100267021 [Vitis vinifera] gi|298204393|emb|CBI16873.3| unnamed protein product [Vitis vinifera]

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 219/352 (62%), Positives = 265/352 (75%), Gaps = 25/352 (7%)

Query: 1   MAGLLAWAADVVKAHKDDDDDEDAINSSIPLVFTEEQQKYVRELDQKAASLSRLIRDLRL 60
           MAGL+AWAADVV      +D++DA  +SIP+VF+ +Q  YVRELD KAASL R I+DLRL
Sbjct: 1   MAGLIAWAADVVGGGGQSNDEDDA--NSIPIVFSPDQLNYVRELDGKAASLRRTIQDLRL 58

Query: 61  RLPPPDISQRLPHLHAHSLAYSAALSQQLSSHSSTREQTQLREVTLQEENAAYEKAISSC 120
           R+PP DISQRLPHLHAHSLA +A L+ QL+SHS+TR+Q QLR  TLQEENAAY+KAI +C
Sbjct: 59  RIPPSDISQRLPHLHAHSLASNADLALQLNSHSATRQQAQLRAETLQEENAAYDKAILNC 118

Query: 121 ESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADK----A 176
           E++IQEK+QEA+ L+ KLKEMDE ENNL  EL+  Q  +NTS+S K  + ++  K    A
Sbjct: 119 ENKIQEKLQEAEFLKMKLKEMDENENNLRIELESAQPTLNTSQSRKSGDVVVESKTTIEA 178

Query: 177 GVDTDALRSDIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQL 236
             DTDA +S I +KLE K+KELSSMEE VQ+LEKKW++VQ++ALKQPSP QREK+L+KQL
Sbjct: 179 QADTDASKSSILDKLESKRKELSSMEETVQDLEKKWSKVQDNALKQPSPVQREKILDKQL 238

Query: 237 HSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLRRRIEGSNVEEDTARNRLRRVTSDRG 296
           HSLIEQL  KQ QAEGLVSEIHLKE+ELE LNGL RR + SN + +TARNR  R      
Sbjct: 239 HSLIEQLAAKQAQAEGLVSEIHLKEQELERLNGLWRRFQTSNTDVNTARNRFGR------ 292

Query: 297 SASTDYLVDDSQKLPYHTGGNETLYK-LMLLRSSFVLYILALHIAVFIKISF 347
                         P++ GG   + K LMLLRS+FVLYILALHI VFIKISF
Sbjct: 293 ------------NKPHNIGGRTEIQKRLMLLRSAFVLYILALHILVFIKISF 332

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237209|ref|NP_197092.1| uncharacterized protein [Arabidopsis thaliana] gi|9755634|emb|CAC01787.1| putative protein [Arabidopsis thaliana] gi|20466278|gb|AAM20456.1| putative protein [Arabidopsis thaliana] gi|31711832|gb|AAP68272.1| At5g15880 [Arabidopsis thaliana] gi|332004837|gb|AED92220.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/353 (60%), Positives = 263/353 (74%), Gaps = 11/353 (3%)

Query: 1   MAGLLAWAADVV-KAHKDDDDDEDAINSSIPLVFTEEQQKYVRELDQKAASLSRLIRDLR 59
           MAGLLAWAADVV K  K+ DD++D     IPLVFTEEQQKYV EL +KA +LSR I+DLR
Sbjct: 1   MAGLLAWAADVVGKNGKEGDDEKD----RIPLVFTEEQQKYVDELGRKATNLSRSIQDLR 56

Query: 60  LRLPPPDISQRLPHLHAHSLAYSAALSQQLSSHSSTREQTQLREVTLQEENAAYEKAISS 119
           LRLPPPDISQRLP LHAHSLA +AAL+ QL SHS+TREQ  +RE TL EEN+AYE AIS+
Sbjct: 57  LRLPPPDISQRLPDLHAHSLASNAALTLQLDSHSATREQAHMREQTLLEENSAYENAIST 116

Query: 120 CESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILA----DK 175
           CE++I+EK  EADSL RKLKE++ +E NL +E D  Q +++  +S   +E+++      K
Sbjct: 117 CETKIEEKRNEADSLLRKLKELEAVEENLKTEQDNAQASLDARQSKSSSETVIQPDGNGK 176

Query: 176 AGVDTDALRSDIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQ 235
            G DT+A++S + EKLE KK ++S MEE+VQ+LE+ WA +Q  ALKQPSPAQREK L+KQ
Sbjct: 177 DGADTEAMKSFMLEKLESKKNDMSLMEEKVQDLERSWAVIQERALKQPSPAQREKTLDKQ 236

Query: 236 LHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLRRRIEGSNVEEDTARNRLRRVTSDR 295
           LHSLIEQL  KQ QAEG+V EIHL E ELE LN L RR E  NVE + ARNR +R  SDR
Sbjct: 237 LHSLIEQLAAKQAQAEGIVGEIHLNEMELERLNNLWRRYESFNVEGNAARNRFKRTNSDR 296

Query: 296 GSASTDYLVDDSQKLPYHTGG-NETLYKLMLLRSSFVLYILALHIAVFIKISF 347
              ++D+ VD    LPY +   N T  +LM LRS+FV+YILAL + VFI+ISF
Sbjct: 297 -EFTSDHEVDGHSYLPYSSATRNGTQTRLMYLRSAFVVYILALQVLVFIRISF 348

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807611|ref|XP_002871689.1| hypothetical protein ARALYDRAFT_488437 [Arabidopsis lyrata subsp. lyrata] gi|297317526|gb|EFH47948.1| hypothetical protein ARALYDRAFT_488437 [Arabidopsis lyrata subsp. lyrata]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 214/353 (60%), Positives = 259/353 (73%), Gaps = 11/353 (3%)

Query: 1   MAGLLAWAADVV-KAHKDDDDDEDAINSSIPLVFTEEQQKYVRELDQKAASLSRLIRDLR 59
           MAGLLAWAADVV K  K+ DD++D     IPLVFTEEQQKYV EL +KA +LSR I+DLR
Sbjct: 1   MAGLLAWAADVVGKNGKEGDDEKD----RIPLVFTEEQQKYVDELGRKATTLSRSIQDLR 56

Query: 60  LRLPPPDISQRLPHLHAHSLAYSAALSQQLSSHSSTREQTQLREVTLQEENAAYEKAISS 119
           LRLPPPDISQRLP L AHSLA +AAL+ QL SHS+TREQ  +RE TL EEN+AYE AIS 
Sbjct: 57  LRLPPPDISQRLPDLLAHSLASNAALTLQLDSHSATREQAHMREQTLLEENSAYENAISI 116

Query: 120 CESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILA----DK 175
           CES+I+EK  EA SL RKLKE++ +E NL +E +  Q +++  +S   +E+++      K
Sbjct: 117 CESKIEEKRNEAGSLLRKLKELENVEENLKTEQEDAQASLDARQSRISSETVIQPDGNGK 176

Query: 176 AGVDTDALRSDIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQ 235
            G DT+A++S + EKLE KK +LSSME +VQ+LE+ WA +Q  ALKQPSPAQREK L+KQ
Sbjct: 177 DGADTEAMKSVMLEKLESKKNDLSSMEAKVQDLERSWAVIQERALKQPSPAQREKTLDKQ 236

Query: 236 LHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLRRRIEGSNVEEDTARNRLRRVTSDR 295
           LHSLIEQL  KQ QAEG+V EIH  E ELE LN L RR E  NVE + ARNR +R  SDR
Sbjct: 237 LHSLIEQLAAKQAQAEGIVGEIHSNEMELERLNNLLRRYESFNVEGNAARNRFKRTNSDR 296

Query: 296 GSASTDYLVDDSQKLPYHTGG-NETLYKLMLLRSSFVLYILALHIAVFIKISF 347
             AS D+ VD    LPY +   N T  +LM LRS+FV+YILAL + VFIKISF
Sbjct: 297 EFAS-DHEVDAHSYLPYSSATRNGTQTRLMYLRSAFVVYILALQVLVFIKISF 348

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|90657652|gb|ABD96950.1| hypothetical protein [Cleome spinosa]

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 211/352 (59%), Positives = 252/352 (71%), Gaps = 9/352 (2%)

Query: 1   MAGLLAWAADVVKAHKDDDDDEDAINSSIPLVFTEEQQKYVRELDQKAASLSRLIRDLRL 60
           MAGLLAWAADVV  H  ++D E      IPLVF+ EQ+KY  ELD+KAA+LSR I+DLRL
Sbjct: 1   MAGLLAWAADVVGGHGKEEDGE---KDQIPLVFSAEQKKYAEELDRKAAALSRSIQDLRL 57

Query: 61  RLPPPDISQRLPHLHAHSLAYSAALSQQLSSHSSTREQTQLREVTLQEENAAYEKAISSC 120
           RLPPPDISQRLPHL AHSLA +AAL+ QL+SHS+TREQ QLRE TL EEN+AYEKAIS+ 
Sbjct: 58  RLPPPDISQRLPHLLAHSLASNAALALQLNSHSATREQAQLREQTLLEENSAYEKAISNY 117

Query: 121 ESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKA---- 176
              ++ +      L  K  E+++ E NL  EL+  Q ++  +++    ES+    A    
Sbjct: 118 ILFVETRFVVVYFLCGKDYELEDAEENLTDELEDAQVSLKNTQTRNSGESVYQSDANSKD 177

Query: 177 GVDTDALRSDIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQL 236
           G D +A +  I EKLE KKKELSSMEE+VQ LEKKWA +Q  ALKQPSPAQREK L+KQL
Sbjct: 178 GSDAEAEKFAILEKLESKKKELSSMEEQVQYLEKKWAVIQERALKQPSPAQREKTLDKQL 237

Query: 237 HSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLRRRIEGSNVEEDTARNRLRRVTSDRG 296
           HSLIEQL  KQ QAEGLV EIH KE ELE LNGL RR E SN+E + ARNR  R  SD+G
Sbjct: 238 HSLIEQLAAKQAQAEGLVGEIHSKEMELERLNGLWRRYESSNIEGNNARNRFARTNSDKG 297

Query: 297 SASTDYLVDDSQKLPYHTGG-NETLYKLMLLRSSFVLYILALHIAVFIKISF 347
           S S D+ VD    LPY +   N+T  +LM LRS+FV+YILALH+ VFIKISF
Sbjct: 298 SVS-DHEVDAHSYLPYSSAPRNDTQTRLMYLRSAFVIYILALHVLVFIKISF 348

Source: Cleome spinosa

Species: Cleome spinosa

Genus: Cleome

Family: Cleomaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449531998|ref|XP_004172972.1| PREDICTED: uncharacterized LOC101206785 [Cucumis sativus]

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 213/351 (60%), Positives = 262/351 (74%), Gaps = 6/351 (1%)

Query: 1   MAGLLAWAADVVKAHKDDDDDEDAINSSIPLVFTEEQQKYVRELDQKAASLSRLIRDLRL 60
           MAGLL+WAADVV       +  D   +SIPL+FT +QQ YVREL+QKAASLSR +RDLRL
Sbjct: 1   MAGLLSWAADVVAGGGGGANHNDERTTSIPLIFTPDQQNYVRELNQKAASLSRSVRDLRL 60

Query: 61  RLPPPDISQRLPHLHAHSLAYSAALSQQLSSHSSTREQTQLREVTLQEENAAYEKAISSC 120
           RLPPPDISQRLPHLHAHSLA +A L+ QL++HSSTREQ QLRE++LQEEN AY KAIS+C
Sbjct: 61  RLPPPDISQRLPHLHAHSLASTADLTLQLNAHSSTREQVQLREISLQEENVAYGKAISNC 120

Query: 121 ESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKS---GKFTESILADKAG 177
           E++IQEK QEAD L RKL+E++E   NL  EL+  Q A+   +S   GK T      +A 
Sbjct: 121 ENKIQEKRQEADLLLRKLEELEETTKNLEVELENAQAALENDESINFGKLTSKPSKVEAE 180

Query: 178 VDTDALRSDIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLH 237
            D +  +S + +KLE+KK+ELSSME+ V+ELEK WA++Q+ ALKQPSP QREKML+KQLH
Sbjct: 181 QDMELSKSALLDKLEIKKQELSSMEDTVKELEKNWAEIQDKALKQPSPVQREKMLDKQLH 240

Query: 238 SLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLRRRIEGSNVEEDTARNRLRRVTSDRGS 297
           SL+EQL VKQ QAEGL S+IHLKE ELE LN   RR++ S+ E + ARNR  +  SD+  
Sbjct: 241 SLMEQLAVKQAQAEGLASDIHLKEMELEKLNTSSRRLQSSSSEANIARNRFGKSMSDKN- 299

Query: 298 ASTDYLVDDSQKLPYHTGG-NETLYKLMLLRSSFVLYILALHIAVFIKISF 347
              D L D   +LPY +GG +E   +LML RS+FV+YILALHI VFIKISF
Sbjct: 300 -FQDLLADSHHRLPYRSGGRSENQQRLMLFRSAFVVYILALHILVFIKISF 349

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455797|ref|XP_004145637.1| PREDICTED: uncharacterized protein LOC101206785 [Cucumis sativus]

 Score =  369 bits (946), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 212/351 (60%), Positives = 261/351 (74%), Gaps = 6/351 (1%)

Query: 1   MAGLLAWAADVVKAHKDDDDDEDAINSSIPLVFTEEQQKYVRELDQKAASLSRLIRDLRL 60
           MAGLL+WAADVV       +  D   +SIPL+FT +QQ YVREL+QKAASLSR +RDLRL
Sbjct: 1   MAGLLSWAADVVAGGGGGANHNDERTTSIPLIFTPDQQNYVRELNQKAASLSRSVRDLRL 60

Query: 61  RLPPPDISQRLPHLHAHSLAYSAALSQQLSSHSSTREQTQLREVTLQEENAAYEKAISSC 120
           RLPPPDISQRLPHLHAHSLA +A L+ QL++HSSTREQ QLRE++LQEEN AY KAIS+C
Sbjct: 61  RLPPPDISQRLPHLHAHSLASTADLTLQLNAHSSTREQVQLREISLQEENVAYGKAISNC 120

Query: 121 ESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKS---GKFTESILADKAG 177
           E++IQEK QEAD L RKL+E++E   NL  EL+  Q A+   +S   GK T      +A 
Sbjct: 121 ENKIQEKRQEADLLLRKLEELEETTKNLEVELENAQAALENDESINFGKLTSKPSKVEAE 180

Query: 178 VDTDALRSDIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLH 237
            D +  +S + +KLE+KK+ELSSME+ V+ELEK WA++Q+ ALKQPSP QREKML+KQLH
Sbjct: 181 QDMELSKSALLDKLEIKKQELSSMEDTVKELEKNWAEIQDKALKQPSPVQREKMLDKQLH 240

Query: 238 SLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLRRRIEGSNVEEDTARNRLRRVTSDRGS 297
           SL+EQL VKQ QAEGL S+IHLKE ELE L    RR++ S+ E + ARNR  +  SD+  
Sbjct: 241 SLMEQLAVKQAQAEGLASDIHLKEMELEKLKTSSRRLQSSSSEANIARNRFGKSMSDKN- 299

Query: 298 ASTDYLVDDSQKLPYHTGG-NETLYKLMLLRSSFVLYILALHIAVFIKISF 347
              D L D   +LPY +GG +E   +LML RS+FV+YILALHI VFIKISF
Sbjct: 300 -FQDLLADSHHRLPYRSGGRSENQQRLMLFRSAFVVYILALHILVFIKISF 349

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573659|ref|XP_003554975.1| PREDICTED: uncharacterized protein LOC100818761 [Glycine max]

 Score =  364 bits (934), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 204/349 (58%), Positives = 251/349 (71%), Gaps = 23/349 (6%)

Query: 1   MAGLLAWAADVVKAHKDDDDDEDAINSSIPLVFTEEQQKYVRELDQKAASLSRLIRDLRL 60
           MAGLLAWA   V      + ++D I   IP++F+ +QQKYV ELDQKA+SL R I DLR 
Sbjct: 1   MAGLLAWA---VGGGGGKEAEDDGI---IPILFSADQQKYVNELDQKASSLRRWIHDLRQ 54

Query: 61  RLPPPDISQRLPHLHAHSLAYSAALSQQLSSHSSTREQTQLREVTLQEENAAYEKAISSC 120
           RLPP DISQ LPHLHAHSLA +AAL+ QL+SHS+TR+Q QLREVTL+EENAA+E AIS C
Sbjct: 55  RLPPQDISQSLPHLHAHSLASNAALALQLNSHSTTRQQAQLREVTLKEENAAFENAISDC 114

Query: 121 ESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDT 180
           E++I+EK+QEAD LR KLK + E+EN             +    G   E     KAG++ 
Sbjct: 115 ENKIKEKLQEADLLREKLK-IAEVEN---------MKQPSWVSDGWEEEKKANSKAGLEA 164

Query: 181 DALRSDIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLI 240
           +   S + ++LE KKK++SSME  V ELEKKWAQVQ +ALKQPSP QREK L+K LH LI
Sbjct: 165 E---SALLDELEKKKKDMSSMENAVHELEKKWAQVQENALKQPSPGQREKTLDKHLHGLI 221

Query: 241 EQLEVKQTQAEGLVSEIHLKEKELETLNGLRRRIEGSNVEEDT-ARNRLRRVTSDRGSAS 299
           EQL VKQ QAEGL+ EIHLKE ELE LNGL RR E SN E +T ARNR  + +SD+  + 
Sbjct: 222 EQLAVKQAQAEGLLGEIHLKEMELERLNGLWRRTESSNSEANTAARNRFSKGSSDKLHSL 281

Query: 300 TDYLVDDSQKLPYHTGG-NETLYKLMLLRSSFVLYILALHIAVFIKISF 347
           +DY  +  Q+LPYH+ G  E+  +LMLLRS+FVLYILALHI VFI++SF
Sbjct: 282 SDY--EGHQRLPYHSAGRTESQQRLMLLRSAFVLYILALHILVFIRLSF 328

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	347
TAIR|locus:2146052	348	AT5G15880 "AT5G15880" [Arabido	0.916	0.913	0.481	4.4e-68
UNIPROTKB|E1BQX8	772	E1BQX8 "Uncharacterized protei	0.547	0.246	0.252	3.5e-05
DICTYBASE|DDB_G0268498	818	DDB_G0268498 "unknown" [Dictyo	0.544	0.231	0.219	0.00011
UNIPROTKB|Q27991	1976	MYH10 "Myosin-10" [Bos taurus	0.541	0.095	0.261	0.00023
WB|WBGene00006754	882	unc-15 [Caenorhabditis elegans	0.478	0.188	0.245	0.00043
RGD|1311640	719	Cep290 "centrosomal protein 29	0.573	0.276	0.247	0.00043
UNIPROTKB|F1REW5	1204	CLIP1 "Uncharacterized protein	0.593	0.171	0.236	0.00048
UNIPROTKB|F5H0N7	1013	CLIP1 "CAP-Gly domain-containi	0.521	0.178	0.262	0.00066
RGD|67404	1320	Clip1 "CAP-GLY domain containi	0.570	0.15	0.245	0.00069
UNIPROTKB|F1MAH8	1320	Clip1 "Protein Clip1" [Rattus	0.570	0.15	0.245	0.00069

TAIR|locus:2146052 AT5G15880 "AT5G15880" [Arabidopsis thaliana (taxid:3702)]

 Score = 691 (248.3 bits), Expect = 4.4e-68, P = 4.4e-68
 Identities = 156/324 (48%), Positives = 194/324 (59%)

Query:    29 IPLVFTEEQQKYVRELDQKAAXXXXXXXXXXXXXXXXXXXQRLPXXXXXXXXXXXXXXXX 88
             IPLVFTEEQQKYV EL +KA                    QRLP                
Sbjct:    26 IPLVFTEEQQKYVDELGRKATNLSRSIQDLRLRLPPPDISQRLPDLHAHSLASNAALTLQ 85

Query:    89 XXXXXXTREQTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNL 148
                   TREQ  +RE TL EEN+AYE AIS+CE++I+EK  EADSL RKLKE++ +E NL
Sbjct:    86 LDSHSATREQAHMREQTLLEENSAYENAISTCETKIEEKRNEADSLLRKLKELEAVEENL 145

Query:   149 ASELDKVQTAMNTSKSGKFTESILAD----KAGVDTDALRSDIAXXXXXXXXXXXXXXXR 204
              +E D  Q +++  +S   +E+++      K G DT+A++S +                +
Sbjct:   146 KTEQDNAQASLDARQSKSSSETVIQPDGNGKDGADTEAMKSFMLEKLESKKNDMSLMEEK 205

Query:   205 VQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKEL 264
             VQ+LE+ WA +Q  ALKQPSPAQREK L+KQLHSLIEQL  KQ QAEG+V EIHL E EL
Sbjct:   206 VQDLERSWAVIQERALKQPSPAQREKTLDKQLHSLIEQLAAKQAQAEGIVGEIHLNEMEL 265

Query:   265 ETLNGLRRRIEGSNVEEDTARNRLRRVTSDRGSASTDYLVDDSQKLPYHTGG-NETLYKL 323
             E LN L RR E  NVE + ARNR +R  SDR   S D+ VD    LPY +   N T  +L
Sbjct:   266 ERLNNLWRRYESFNVEGNAARNRFKRTNSDREFTS-DHEVDGHSYLPYSSATRNGTQTRL 324

Query:   324 MLLRSSFVLYILALHIAVFIKISF 347
             M LRS+FV+YILAL + VFI+ISF
Sbjct:   325 MYLRSAFVVYILALQVLVFIRISF 348

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

UNIPROTKB|E1BQX8 E1BQX8 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 128 (50.1 bits), Expect = 3.5e-05, P = 3.5e-05
 Identities = 53/210 (25%), Positives = 101/210 (48%)

Query:    97 EQTQLREVTLQEENAAYEKAIS---SCESRIQEKIQEADSLRRKLKEMDEMENNLASELD 153
             E+++L E  LQE+ ++ EK +    S +  +QE ++E  SL +KL   DE    + ++  
Sbjct:   288 ERSKLIE-QLQEKVSSLEKKLERNLSGDEHVQELLKEKASLEQKL---DETSQQILTDRM 343

Query:   154 KVQTAMNTSKSGKFTESILADKAGVDTDALRSDIAXXXXXXXXXXXXXXXRVQ-ELEKKW 212
                  MN  ++    E  L +K  + T+AL+                   ++Q ++E + 
Sbjct:   344 HHANGMNQLETQN-RE--LEEKLQIATEALKMS-----KEAASEQDLKIQKLQMDVENER 395

Query:   213 AQVQNDALKQPSP-AQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLR 271
             +++Q   L +     Q+   L  Q+ +L    E  +T A+  +S++   EKE E LNG R
Sbjct:   396 SKLQQQVLSEKHQYEQKISELESQIAALQTAWEFDKTAAQHKISQL---EKENENLNGSR 452

Query:   272 RRIEGSNVEEDTARNRLRRVTSDRGSASTD 301
                E S  ++++  N+L++  S R + +T+
Sbjct:   453 EEYESSLKKQESVLNKLKKELSSRETVNTE 482

GO:0000042 "protein targeting to Golgi" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

DICTYBASE|DDB_G0268498 DDB_G0268498 "unknown" [Dictyostelium discoideum (taxid:44689)]

 Score = 124 (48.7 bits), Expect = 0.00011, P = 0.00011
 Identities = 43/196 (21%), Positives = 92/196 (46%)

Query:   102 REVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNT 161
             RE T Q+ N  YE  +SSC   I+ +  +  SLR K+ E+  + ++L ++ +++Q+  N 
Sbjct:   374 RESTSQQ-NEQYEGRLSSCNQEIESQSVQLKSLRGKVDEVCHLLSSLKAQHEELQSNYNV 432

Query:   162 SKSGKFTESILADKAGVDTDALRSDIAXXXXXXXXXXXXXXXRVQELEKKWAQVQNDALK 221
              K+ K       +++  D    +  ++                + +LEK+ A ++ + L+
Sbjct:   433 CKAEKEQLEQQLEESTNDVQEFKLKLSTAKSAAVESEQNFTAMIAQLEKEKAIIKEEVLR 492

Query:   222 QPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLRRRIEGSN--V 279
               S  ++E    + + SL     V  TQ +  +S +  ++KEL  L+  +  +E     V
Sbjct:   493 ATS--EKEDT-EENVKSLQASQAVLVTQLQDDISSL-TRDKELLALSMQKATLERKEAVV 548

Query:   280 EEDTARNRLRRVTSDR 295
              ++ A  ++  + S++
Sbjct:   549 LQEKAEKKMVEMQSEK 564

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q27991 MYH10 "Myosin-10" [Bos taurus (taxid:9913)]

 Score = 125 (49.1 bits), Expect = 0.00023, P = 0.00023
 Identities = 56/214 (26%), Positives = 97/214 (45%)

Query:   106 LQEENAAYEKAISSCESRIQE---KIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTS 162
             LQ+  A  E      ++++QE   K+ E D LR    E+ E  N L +ELD V T +  +
Sbjct:  1243 LQQVKAESEHKRKKLDAQVQELHAKVSEGDRLR---VELAEKANKLQNELDNVSTLLEEA 1299

Query:   163 -KSG-KFTESILADKAGVDTDALRSDIAXXXXXXXXXXXXXXXRVQELEKKWAQVQNDAL 220
              K G KF +    D AG+++     D                 R+++LE++ + +Q    
Sbjct:  1300 EKKGIKFAK----DAAGLESQL--QDTQELLQEETRQKLNLSSRIRQLEEERSSLQE--- 1350

Query:   221 KQPSPAQREKMLNKQLHSLIEQLEVKQTQAE---GLVSEIH-LKEKELETLNGLRRRIEG 276
             +Q    +  + L KQL +L  QL   + + +   G +  +   K+K L+ +  L +R+E 
Sbjct:  1351 QQEEEEEARRSLEKQLQALQAQLTDTKKKVDDDLGTIENLEEAKKKLLKDVEVLSQRLE- 1409

Query:   277 SNVEEDTARNRLRRVTSDRGSASTDYLVD-DSQK 309
                E+  A ++L +  +       D LVD D Q+
Sbjct:  1410 ---EKALAYDKLEKTKTRLQQELDDLLVDLDHQR 1440

GO:0006930 "substrate-dependent cell migration, cell extension" evidence=ISS

GO:0006887 "exocytosis" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0001778 "plasma membrane repair" evidence=ISS

GO:0001764 "neuron migration" evidence=ISS

GO:0001725 "stress fiber" evidence=ISS

GO:0060041 "retina development in camera-type eye" evidence=IEA

GO:0055015 "ventricular cardiac muscle cell development" evidence=IEA

GO:0055003 "cardiac myofibril assembly" evidence=IEA

GO:0051015 "actin filament binding" evidence=IEA

GO:0050885 "neuromuscular process controlling balance" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0043197 "dendritic spine" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0032154 "cleavage furrow" evidence=IEA

GO:0031594 "neuromuscular junction" evidence=IEA

GO:0030898 "actin-dependent ATPase activity" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0030426 "growth cone" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0030048 "actin filament-based movement" evidence=IEA

GO:0021680 "cerebellar Purkinje cell layer development" evidence=IEA

GO:0021678 "third ventricle development" evidence=IEA

GO:0021670 "lateral ventricle development" evidence=IEA

GO:0021592 "fourth ventricle development" evidence=IEA

GO:0016460 "myosin II complex" evidence=IEA

GO:0008360 "regulation of cell shape" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0007512 "adult heart development" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0007097 "nuclear migration" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0000281 "cytokinesis after mitosis" evidence=IEA

GO:0000146 "microfilament motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

WB|WBGene00006754 unc-15 [Caenorhabditis elegans (taxid:6239)]

 Score = 119 (46.9 bits), Expect = 0.00043, P = 0.00043
 Identities = 42/171 (24%), Positives = 79/171 (46%)

Query:   129 QEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALRSDIA 188
             Q+ +  RR+L++ +   + L S+L +VQ  +++ ++    ESI    A    +   ++I 
Sbjct:   253 QQLEEARRRLEDAERERSQLQSQLHQVQLELDSVRTALDEESIARSDAEHKLNLANTEIT 312

Query:   189 XXXXXXXXXXXXXXXRVQELEKKWAQVQNDALKQPS-PAQREKMLNK---QLHSLIEQLE 244
                             V++L KK  Q Q +  +Q     Q+   L K   +L S +E L 
Sbjct:   313 QWKSKFDAEVALHHEEVEDLRKKMLQKQAEYEEQIEIMLQKISQLEKAKSRLQSEVEVLI 372

Query:   245 VKQTQAEGLVSEIHLKEKELETLNG-LRRRIEGSNVEEDTARNRLRRVTSD 294
             V   +A+  ++ +    ++LE   G L+ RI+   VE + A+  LR V ++
Sbjct:   373 VDLEKAQNTIALLERAREQLERQVGELKVRIDEITVELEAAQRELRAVNAE 423

GO:0003774 "motor activity" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0018991 "oviposition" evidence=IMP

GO:0040011 "locomotion" evidence=IGI;IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0071688 "striated muscle myosin thick filament assembly" evidence=IMP

GO:0040015 "negative regulation of multicellular organism growth" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0030241 "skeletal muscle myosin thick filament assembly" evidence=IGI;IMP

GO:0051493 "regulation of cytoskeleton organization" evidence=IGI;IMP

GO:0032982 "myosin filament" evidence=IDA

GO:0008092 "cytoskeletal protein binding" evidence=IPI

RGD|1311640 Cep290 "centrosomal protein 290" [Rattus norvegicus (taxid:10116)]

 Score = 118 (46.6 bits), Expect = 0.00043, P = 0.00043
 Identities = 53/214 (24%), Positives = 95/214 (44%)

Query:    99 TQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTA 158
             T  +E  L  +    E+     +S+I++  +    L+  LK     EN+LA +L+ +   
Sbjct:   223 TSQKEANLNVQQVV-ERHTKELKSQIEDLNENLLKLKEALKTSKNKENSLADDLNDLNNE 281

Query:   159 MNTSKSGKFTESILADKAGVD--TDALRSDIAXXXXXXXXXXXXXXXR--VQELEKKWAQ 214
             +   K  K    IL +K G+D   D LR  I                +  + EL+KK  +
Sbjct:   282 LQ--KKQKAYNKILREKDGIDQENDELRRQIKRLSSGLQSKTLIDNKQSLIDELQKKVKK 339

Query:   215 VQNDALKQPSPAQREKMLNKQ-LHSLIEQLEVK--QTQAEGLVSEIHLKEKELETLNGLR 271
             +++   +Q      + +  K     LI   E K  QT+ EG+ ++  LKEKE E ++ L 
Sbjct:   340 LESQLERQVDDVDIKPIKEKSGKEELIRWEEGKKWQTKVEGMRNK--LKEKEGE-VHSLT 396

Query:   272 RRIEGSNVEEDTARNRLRRVTSDRGSASTDYLVD 305
             +++  S ++E  A+    ++T  +   +T   VD
Sbjct:   397 KQL--STLKELFAKADKEKLTLQKKLKTTGMTVD 428

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005813 "centrosome" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=ISO

GO:0007163 "establishment or maintenance of cell polarity" evidence=ISO

GO:0009986 "cell surface" evidence=ISO

GO:0015031 "protein transport" evidence=ISO

GO:0030814 "regulation of cAMP metabolic process" evidence=ISO

GO:0032391 "photoreceptor connecting cilium" evidence=ISO

GO:0036038 "TCTN-B9D complex" evidence=ISO

GO:0042384 "cilium assembly" evidence=ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0060041 "retina development in camera-type eye" evidence=ISO

GO:0060271 "cilium morphogenesis" evidence=IEA;ISO

GO:0051011 "microtubule minus-end binding" evidence=ISO

GO:0000930 "gamma-tubulin complex" evidence=ISO

UNIPROTKB|F1REW5 CLIP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 120 (47.3 bits), Expect = 0.00048, P = 0.00048
 Identities = 52/220 (23%), Positives = 96/220 (43%)

Query:    98 QTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEM-------DEMENNLAS 150
             Q  L EV+  +E  A EK +   + +  +  +EA S++R ++E        +E  N L+S
Sbjct:   600 QENLSEVSQVKE--ALEKELQILKEKFADASEEAVSVQRSMQETVNQLHQKEEQFNALSS 657

Query:   151 ELDKVQTAMNTSKSGKFTESILADKAGVDT-DALRSDIAXXXXXXXXXXXXXXXRVQELE 209
             EL+K++  + T    KF E    ++  +   + L +DIA                  EL 
Sbjct:   658 ELEKLRENL-TDMEAKFRERDEREEQLIKAKEKLENDIAEIMKMSGDHSSQLTKMNDELR 716

Query:   210 KKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNG 269
              K   V+   LK     +    L K +  +   L+ +Q+Q E        K++ L+ L+ 
Sbjct:   717 LKERNVEELQLKLTKANENASFLQKSIGEVT--LKAEQSQQEAAKKHEEEKKELLQKLSD 774

Query:   270 LRRRIEGSNVEEDTARNRLRRVTSDRGSASTDYLVDDSQK 309
             L +++E S+ E    + R    +S+   A  + ++ + QK
Sbjct:   775 LEKKMEMSHNECQDLKARYEEASSE-AKAKHEEVLQNLQK 813

GO:0051010 "microtubule plus-end binding" evidence=IEA

GO:0044354 "macropinosome" evidence=IEA

GO:0035371 "microtubule plus end" evidence=IEA

GO:0031116 "positive regulation of microtubule polymerization" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005881 "cytoplasmic microtubule" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0001578 "microtubule bundle formation" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F5H0N7 CLIP1 "CAP-Gly domain-containing linker protein 1" [Homo sapiens (taxid:9606)]

 Score = 118 (46.6 bits), Expect = 0.00066, P = 0.00066
 Identities = 51/194 (26%), Positives = 84/194 (43%)

Query:   106 LQEENAAYEKAISSCESRI--QEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSK 163
             LQE     EK   + E  +  Q  +QE  +   KL + +E  N L+S+L+K++  +    
Sbjct:   425 LQEAEIKKEKFAEASEEAVSVQRSMQETVN---KLHQKEEQFNMLSSDLEKLRENL-ADM 480

Query:   164 SGKFTESILADKAGVDT-DALRSDIAXXXXXXXXXXXXXXXRVQELEKKWAQVQNDALKQ 222
               KF E    ++  +   + L +DIA                  EL  K   V+   LK 
Sbjct:   481 EAKFREKDEREEQLIKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERDVEELQLKL 540

Query:   223 PSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEK-ELET-LNGLRRRIEGSNVE 280
                 +    L K     IE + VK  Q++   ++ H +EK ELE  L+ L +++E S+ +
Sbjct:   541 TKANENASFLQKS----IEDMTVKAEQSQQEAAKKHEEEKKELERKLSDLEKKMETSHNQ 596

Query:   281 EDTARNRLRRVTSD 294
                 + R  R TS+
Sbjct:   597 CQELKARYERATSE 610

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

RGD|67404 Clip1 "CAP-GLY domain containing linker protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 119 (46.9 bits), Expect = 0.00069, P = 0.00069
 Identities = 51/208 (24%), Positives = 92/208 (44%)

Query:   106 LQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSG 165
             LQE     EK  S+ E  +  +    D++  KL + +E  N L+SEL+K++  + T    
Sbjct:   723 LQEAEIKKEKFASASEEAVSTQTSMQDTVN-KLHQKEEQFNMLSSELEKLRENL-TDMEA 780

Query:   166 KFTESILADKAGVDT-DALRSDIAXXXXXXXXXXXXXXXRVQELEKKWAQVQNDALKQPS 224
             KF E    +   V   + L +DIA                  EL  K   V+   LK   
Sbjct:   781 KFKEKDEREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTK 840

Query:   225 PAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEK-ELET-LNGLRRRIEGSNVEED 282
               +   +L K +  +   L+ +Q+Q E   ++ H +EK ELE  L  L +++E S+ +  
Sbjct:   841 ANENASLLQKSIGEVT--LKAEQSQQEA--AKKHEEEKKELENKLLELEKKMETSHYQCQ 896

Query:   283 TARNRLRRVTSDRGSASTDYLVDDSQKL 310
               + +  + +S+      + ++ + QK+
Sbjct:   897 DLKAKYEKASSET-KIKHEEILQNFQKM 923

GO:0001578 "microtubule bundle formation" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO

GO:0005813 "centrosome" evidence=ISO

GO:0005874 "microtubule" evidence=ISO

GO:0005881 "cytoplasmic microtubule" evidence=ISO

GO:0008017 "microtubule binding" evidence=ISO;TAS

GO:0008270 "zinc ion binding" evidence=ISO

GO:0015630 "microtubule cytoskeleton" evidence=ISO

GO:0015631 "tubulin binding" evidence=ISO

GO:0031116 "positive regulation of microtubule polymerization" evidence=ISO

GO:0035371 "microtubule plus end" evidence=ISO

GO:0051010 "microtubule plus-end binding" evidence=ISO

GO:0044354 "macropinosome" evidence=ISO

UNIPROTKB|F1MAH8 Clip1 "Protein Clip1" [Rattus norvegicus (taxid:10116)]

 Score = 119 (46.9 bits), Expect = 0.00069, P = 0.00069
 Identities = 51/208 (24%), Positives = 92/208 (44%)

Query:   106 LQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSG 165
             LQE     EK  S+ E  +  +    D++  KL + +E  N L+SEL+K++  + T    
Sbjct:   723 LQEAEIKKEKFASASEEAVSTQTSMQDTVN-KLHQKEEQFNMLSSELEKLRENL-TDMEA 780

Query:   166 KFTESILADKAGVDT-DALRSDIAXXXXXXXXXXXXXXXRVQELEKKWAQVQNDALKQPS 224
             KF E    +   V   + L +DIA                  EL  K   V+   LK   
Sbjct:   781 KFKEKDEREDQLVKAKEKLENDIAEIMKMSGDNSSQLTKMNDELRLKERSVEELQLKLTK 840

Query:   225 PAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEK-ELET-LNGLRRRIEGSNVEED 282
               +   +L K +  +   L+ +Q+Q E   ++ H +EK ELE  L  L +++E S+ +  
Sbjct:   841 ANENASLLQKSIGEVT--LKAEQSQQEA--AKKHEEEKKELENKLLELEKKMETSHYQCQ 896

Query:   283 TARNRLRRVTSDRGSASTDYLVDDSQKL 310
               + +  + +S+      + ++ + QK+
Sbjct:   897 DLKAKYEKASSET-KIKHEEILQNFQKM 923


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.127   0.330    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      347       272   0.00099  114 3  10 23  0.41    34
                                                     32  0.40    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  608 (65 KB)
  Total size of DFA:  234 KB (2128 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  42.84u 0.12s 42.96t   Elapsed:  00:00:02
  Total cpu time:  42.85u 0.12s 42.97t   Elapsed:  00:00:02
  Start:  Fri May 10 15:23:32 2013   End:  Fri May 10 15:23:34 2013

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	347
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	6e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-04
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	3e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	7e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	9e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
COG5185	622	COG5185, HEC1, Protein involved in chromosome segr	0.002
PRK11678	450	PRK11678, PRK11678, putative chaperone; Provisiona	0.004

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 47/211 (22%), Positives = 88/211 (41%), Gaps = 16/211 (7%)

Query: 83  AALSQQLSSHSSTREQTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMD 142
             L ++L        + +     LQ+E  A    IS  E + Q   +   +L R+L+E++
Sbjct: 263 QELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELE 322

Query: 143 EMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALRSDIAEKLEVKKKELSSME 202
                L S+LD++   +   +  +  E +  +            +  +LE  + EL  +E
Sbjct: 323 AQLEELESKLDELAEELAELE--EKLEELKEELES---------LEAELEELEAELEELE 371

Query: 203 ERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEI--HLK 260
            R++ELE++        + Q     +   LN ++  L  +LE  + + E L  EI   LK
Sbjct: 372 SRLEELEEQLET-LRSKVAQLE--LQIASLNNEIERLEARLERLEDRRERLQQEIEELLK 428

Query: 261 EKELETLNGLRRRIEGSNVEEDTARNRLRRV 291
           + E   L  L+  +E    E +  +  L R+
Sbjct: 429 KLEEAELKELQAELEELEEELEELQEELERL 459

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 47.8 bits (114), Expect = 6e-06
 Identities = 54/266 (20%), Positives = 108/266 (40%), Gaps = 13/266 (4%)

Query: 42  RELDQKAASLSRLIRDLRLRLPPPDISQRLPHLHAHSLAYSAALS---QQLSSHSSTREQ 98
           R    +   L   +  L+  L    +   L  +       S  LS   +++       EQ
Sbjct: 670 RSEPAELQRLRERLEGLKRELS--SLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQ 727

Query: 99  TQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTA 158
            +  E  L+E     E+ +SS E  I+    E   L  +++E++E  + L   L+ ++  
Sbjct: 728 LEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEAR 787

Query: 159 MNTSKSGKFTESILA-DKAGVDTDALRSDIAEKLEVKKKELSSMEERVQELEKKWAQVQN 217
           ++ S+  +    +   ++     +A   +I +KL     E   +E+ +QEL+++   ++ 
Sbjct: 788 LSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKE 847

Query: 218 DALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSE-IHLKEKELE---TLNGLRRR 273
              +  S  +  + LN +   L E+LE  +     L S    LK++  E    L  L R+
Sbjct: 848 ---QIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERK 904

Query: 274 IEGSNVEEDTARNRLRRVTSDRGSAS 299
           IE    + +  R RL  + +   +  
Sbjct: 905 IEELEAQIEKKRKRLSELKAKLEALE 930

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.1 bits (107), Expect = 5e-05
 Identities = 33/212 (15%), Positives = 89/212 (41%), Gaps = 1/212 (0%)

Query: 85  LSQQLSSHSSTREQTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEM 144
           L +++          + R   L+ E    E+ +   + +I+   +E +     L+E++++
Sbjct: 293 LKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQL 352

Query: 145 ENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALRSDIAEKLEVKKKELSSMEER 204
              L    ++++  ++              +   + +A  ++I  +LE  K+E+ S+EER
Sbjct: 353 LAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEER 412

Query: 205 VQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKEL 264
           ++ L ++   ++ +  +  +  +  +   ++L+  +E+LE +  +    + E+  +  EL
Sbjct: 413 LERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAEL 472

Query: 265 ET-LNGLRRRIEGSNVEEDTARNRLRRVTSDR 295
           +  L  L + +       D      R     R
Sbjct: 473 QEELQRLEKELSSLEARLDRLEAEQRASQGVR 504

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 36/176 (20%), Positives = 80/176 (45%), Gaps = 12/176 (6%)

Query: 123 RIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDA 182
           R++E  +E + L+ +LKE +E    L +EL +++  +   +          ++   +  A
Sbjct: 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYA 292

Query: 183 LRSDIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQ 242
           L ++I+  LE +K+ L    ER+  LE++  +++    +  S          +L   +E+
Sbjct: 293 LANEISR-LEQQKQILR---ERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEE 348

Query: 243 LEVKQTQAEGLVSEIHLKEKELET--------LNGLRRRIEGSNVEEDTARNRLRR 290
           L+ +    E  + E+  + +ELE+        L  LR ++    ++  +  N + R
Sbjct: 349 LKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIER 404

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 47/239 (19%), Positives = 109/239 (45%), Gaps = 16/239 (6%)

Query: 35  EEQQKYVRELDQKAASLSRLIRDLRLRLPPPDISQRLPHLHAHSLAYSAALSQQLSSHSS 94
           E+ Q  + EL+++   L   + +L+ RL   ++ + L  L        A L +++     
Sbjct: 733 EQLQSRLEELEEELEELEEELEELQERLE--ELEEELESLEEAL----AKLKEEIEELEE 786

Query: 95  TREQTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDK 154
            R+  Q     L+EE    E+ + + E  ++   Q  + L ++++E++E    L  +LD+
Sbjct: 787 KRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDE 846

Query: 155 VQTAMNTSKSGKFTESILADKAGVDTDALRSDIAEKLEVKKKELSSMEERVQELEKKWAQ 214
           ++  +   +          ++     +A + ++ ++L+  ++E   +EE ++ELE + A+
Sbjct: 847 LEEELEELEKELEELKEELEEL----EAEKEELEDELKELEEEKEELEEELRELESELAE 902

Query: 215 VQNDALKQPSPAQREKMLNKQLHSLIEQLEVK------QTQAEGLVSEIHLKEKELETL 267
           ++ +  K     +  +   ++L   + +LE +       T    L  EI   E+E+E L
Sbjct: 903 LKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEAL 961

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 46/217 (21%), Positives = 86/217 (39%), Gaps = 11/217 (5%)

Query: 83  AALSQQLSSHSSTREQTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMD 142
            +L   L       E+ + +   L+ E AA E+ +   +SR++E  +E + L  +L+E+ 
Sbjct: 698 RSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQ 757

Query: 143 EMENNLASELDKVQTAMN---------TSKSGKFTESILADKAGVDTDALRSDIAEKLEV 193
           E    L  EL+ ++ A+            K     E +   +   + +     +      
Sbjct: 758 ERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEE--ELEEAERRLDALERE 815

Query: 194 KKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGL 253
            +      E   QE+E+   +++    K     +  + L K+L  L E+LE  + + E L
Sbjct: 816 LESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEEL 875

Query: 254 VSEIHLKEKELETLNGLRRRIEGSNVEEDTARNRLRR 290
             E+   E+E E L    R +E    E      +LR 
Sbjct: 876 EDELKELEEEKEELEEELRELESELAELKEEIEKLRE 912

Length = 1163

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 42/197 (21%), Positives = 84/197 (42%), Gaps = 20/197 (10%)

Query: 84  ALSQQLSSHSSTREQTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDE 143
            L + ++    T E+ + R   L+E  A  E           E  +EA+  R ++ E++ 
Sbjct: 520 DLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNS 579

Query: 144 MENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDA-----LRSDIAEKLEVKKKEL 198
               L   ++ ++             ++LA  A  + +       R  +AE  + +++ L
Sbjct: 580 KLAELKERIESLER----------IRTLLAAIADAEDEIERLREKREALAELNDERRERL 629

Query: 199 SSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIH 258
           +   ER +ELE   A+     +++    + ++   + L  + E+L+  + + + L +EI 
Sbjct: 630 AEKRERKRELE---AEFDEARIEEAR--EDKERAEEYLEQVEEKLDELREERDDLQAEIG 684

Query: 259 LKEKELETLNGLRRRIE 275
             E ELE L  LR R E
Sbjct: 685 AVENELEELEELRERRE 701

Length = 880

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 53/267 (19%), Positives = 107/267 (40%), Gaps = 34/267 (12%)

Query: 34  TEEQQKYVRELDQKAASLSRLIRDLRLRLPPPDISQRLPHLHAHSLAYSAALSQQLSSHS 93
           TE  ++ ++E +++   + R I ++   LP  ++ + L  L            ++L    
Sbjct: 188 TENIEELIKEKEKELEEVLREINEISSELP--ELREELEKLEK--------EVKELEELK 237

Query: 94  STREQTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELD 153
              E+ +    +L+      E+ I   E RI+E  +E + L  K+KE+ E++        
Sbjct: 238 EEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELK-------- 289

Query: 154 KVQTAMNTSKSGKFTESILADKAGVDTDALR-SDIAEKLEVKKKELSSMEERVQELEKKW 212
             + A    K  +F E  L +   ++    R  +    +E + KEL   EER++EL+KK 
Sbjct: 290 --EKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKL 347

Query: 213 AQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKE--LETLNGL 270
            ++           ++     ++ H L E+ + K+ + E L   +     E   + L  L
Sbjct: 348 KEL-----------EKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEEL 396

Query: 271 RRRIEGSNVEEDTARNRLRRVTSDRGS 297
            +  E    E      R+  +  +   
Sbjct: 397 EKAKEEIEEEISKITARIGELKKEIKE 423

Length = 880

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.9 bits (96), Expect = 8e-04
 Identities = 39/211 (18%), Positives = 86/211 (40%), Gaps = 30/211 (14%)

Query: 97  EQTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQ 156
           ++ +     L+EE +  E+ +   +  ++E  +E + L+ +L+E+ E    L  EL +++
Sbjct: 235 KELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELK 294

Query: 157 TAMNTSKSGKFTESILADKAGVDTDALRSDIAEKLEVKKKELSSMEERVQELEKKWAQVQ 216
             +                   + +   S + E+LE  + EL  +EER++EL++K   ++
Sbjct: 295 EEIE------------------ELEGEISLLRERLEELENELEELEERLEELKEKIEALK 336

Query: 217 NDALKQPSPAQREKMLNKQLHSLIEQLE------------VKQTQAEGLVSEIHLKEKEL 264
            +  ++ +  +  + L  +L    E+LE            + +   E L        +  
Sbjct: 337 EELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIR 396

Query: 265 ETLNGLRRRIEGSNVEEDTARNRLRRVTSDR 295
             L  L+R IE      +    RL  +  + 
Sbjct: 397 NELEELKREIESLEERLERLSERLEDLKEEL 427

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.8 bits (96), Expect = 9e-04
 Identities = 48/240 (20%), Positives = 97/240 (40%), Gaps = 23/240 (9%)

Query: 35  EEQQKYVRELDQKAASLSRLIRDLRLRLPPPDISQRLPHLHAHSLAYSAALSQQLSSHSS 94
           EE ++ + +L ++   LSR I  LR  L       RL           A LS++L+   +
Sbjct: 708 EELEEELEQLRKELEELSRQISALRKDL------ARLEAEVEQLEERIAQLSKELTELEA 761

Query: 95  TREQTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDK 154
             E+ + R    +EE A  E  I   E++I++  +E  +LR  L E+      L  E   
Sbjct: 762 EIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAAN 821

Query: 155 VQTAMN--------TSKSGKFTESILADKAGV---------DTDALRSDIAEKLEVKKKE 197
           ++  +         T +  +  E  + + +           + + L  ++  +LE    E
Sbjct: 822 LRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNE 881

Query: 198 LSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEI 257
            +S+EE +  L  +  ++  +  +  S     +   ++L   + QLE++    E  +  +
Sbjct: 882 RASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNL 941

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 47/217 (21%), Positives = 96/217 (44%), Gaps = 26/217 (11%)

Query: 84  ALSQQLSSHSSTREQTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDE 143
           AL+ ++S     ++  + R   L+ +    E  +   ES++ E  +E   L  KL+E+ E
Sbjct: 292 ALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKE 351

Query: 144 MENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALRSDIAE---KLEVKKKELSS 200
              +L +EL++++  +   +S         ++     + LRS +A+   ++     E+  
Sbjct: 352 ELESLEAELEELEAELEELESR-------LEELEEQLETLRSKVAQLELQIASLNNEIER 404

Query: 201 MEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLK 260
           +E R++ LE      + + L+Q      +K+   +L  L  +LE  + + E L       
Sbjct: 405 LEARLERLED-----RRERLQQEIEELLKKLEEAELKELQAELEELEEELEEL------- 452

Query: 261 EKELETLNG----LRRRIEGSNVEEDTARNRLRRVTS 293
           ++ELE L      LR  +E +    D A   L ++ +
Sbjct: 453 QEELERLEEALEELREELEEAEQALDAAERELAQLQA 489

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

 Score = 39.6 bits (92), Expect = 0.002
 Identities = 39/182 (21%), Positives = 82/182 (45%), Gaps = 25/182 (13%)

Query: 123 RIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNT--SKSGKFTESILADKAGVDT 180
            + EKIQEA  + +K+K + E    L S+ +K +  +N    KS ++   +         
Sbjct: 282 NLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKL--------- 332

Query: 181 DALRSDIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLI 240
                 +  ++E+K++E+ +++  + EL K   Q++    +  S  Q E M N++   L 
Sbjct: 333 ----EKLKSEIELKEEEIKALQSNIDELHK---QLRK---QGISTEQFELM-NQEREKLT 381

Query: 241 EQLEVKQTQAEGLVSEIHLKEKELETLNGLRRRIEGSNVEEDTARNRLRRVTSDRGSAST 300
            +L+    Q++ L   +  ++ E +   G+ + +E +  + D+    + R  S  G    
Sbjct: 382 RELDKINIQSDKLTKSVKSRKLEAQ---GIFKSLEKTLRQYDSLIQNITRSRSQIGHNVN 438

Query: 301 DY 302
           D 
Sbjct: 439 DS 440

Length = 622

>gnl|CDD|236954 PRK11678, PRK11678, putative chaperone; Provisional

 Score = 38.3 bits (90), Expect = 0.004
 Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 11/88 (12%)

Query: 53  RLIRDLRLRLPPPDISQRLPHLHAHSLAY----SA-----ALSQQLSSHSSTREQTQLRE 103
           RL+ DL      P+   RL  +    L+Y    SA     ALS Q  + +S    +    
Sbjct: 307 RLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFISDGLA 366

Query: 104 VTLQEENAAYEKAISSCESRIQEKIQEA 131
             + ++    E+AIS   +RI E +Q A
Sbjct: 367 TEISQQ--GLEEAISQPLARILELVQLA 392

Length = 450

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	347
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	99.85
KOG4677	554	consensus Golgi integral membrane protein [Intrace	99.42
PF08172	248	CASP_C: CASP C terminal; InterPro: IPR012955 This	98.45
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	96.89
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	96.84
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	96.51
KOG0963	629	consensus Transcription factor/CCAAT displacement	96.47
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	96.44
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	96.17
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.99
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	95.85
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	95.84
PHA02562	562	46 endonuclease subunit; Provisional	95.42
PRK11637	428	AmiB activator; Provisional	95.41
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	95.07
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	95.02
PF12240	205	Angiomotin_C: Angiomotin C terminal; InterPro: IPR	94.63
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	94.62
PHA02562	562	46 endonuclease subunit; Provisional	94.56
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	94.46
PRK04863	1486	mukB cell division protein MukB; Provisional	94.43
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	94.38
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	94.17
PRK04863	1486	mukB cell division protein MukB; Provisional	94.15
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	93.99
PRK10246	1047	exonuclease subunit SbcC; Provisional	93.96
PRK03918	880	chromosome segregation protein; Provisional	93.45
PRK02224	880	chromosome segregation protein; Provisional	93.35
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	92.97
COG2433	652	Uncharacterized conserved protein [Function unknow	92.91
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	92.7
PRK11637	428	AmiB activator; Provisional	92.68
PRK09039	343	hypothetical protein; Validated	92.67
PF04136	157	Sec34: Sec34-like family ; InterPro: IPR007265 Sec	92.51
PRK11281	1113	hypothetical protein; Provisional	92.38
PRK02224	880	chromosome segregation protein; Provisional	92.19
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	92.19
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	92.0
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	91.62
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	91.38
PRK11281	1113	hypothetical protein; Provisional	91.07
PF14992	280	TMCO5: TMCO5 family	90.76
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	90.42
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	90.42
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	90.31
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	89.88
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	89.32
PRK09039	343	hypothetical protein; Validated	88.56
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	88.48
PF13514	1111	AAA_27: AAA domain	88.33
KOG0996	1293	consensus Structural maintenance of chromosome pro	88.08
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	87.76
KOG0996	1293	consensus Structural maintenance of chromosome pro	87.36
PRK10929	1109	putative mechanosensitive channel protein; Provisi	87.13
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	86.9
PF01920	106	Prefoldin_2: Prefoldin subunit; InterPro: IPR00277	86.89
PF08581	79	Tup_N: Tup N-terminal; InterPro: IPR013890 The N-t	86.78
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	86.71
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	86.64
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	86.61
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	86.38
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	86.11
PRK15422	79	septal ring assembly protein ZapB; Provisional	85.6
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	85.32
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	85.09
PRK09343	121	prefoldin subunit beta; Provisional	84.74
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	84.71
PRK10884	206	SH3 domain-containing protein; Provisional	84.41
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	84.29
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	84.23
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	84.03
KOG3385	118	consensus V-SNARE [Intracellular trafficking, secr	83.89
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	82.83
TIGR02338	110	gimC_beta prefoldin, beta subunit, archaeal. Chape	82.79
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	82.79
PRK09841	726	cryptic autophosphorylating protein tyrosine kinas	82.2
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	82.13
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	81.02
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	80.16
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	80.01

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=99.85  E-value=3.6e-20  Score=183.25  Aligned_cols=133  Identities=26%  Similarity=0.255  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHhhhh----
Q 019002          200 SMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLRRRIE----  275 (347)
Q Consensus       200 ~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~l~Rn~~----  275 (347)
                      .+.++..++.+-|..|-..+   .+..+  .++|.||++|||.|++||+++|.|.+|+|++.++|||+..++|+-.    
T Consensus       363 k~~~ke~E~q~lr~~l~~~~---~~s~~--~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~~~l~~~~~~~~  437 (511)
T PF09787_consen  363 KLKEKESEIQKLRNQLSARA---SSSSW--NELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLETQLKEEASNNR  437 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHh---ccCCc--HhHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHhhccCCC
Confidence            45567778888888887766   22223  3699999999999999999999999999999999999999999411    


Q ss_pred             ------cCCcchhhhhccccccccCCCCCCcchhhhcccCCcccc----cC--chhHHHHHHHHHHHHHHHHHHHHH
Q 019002          276 ------GSNVEEDTARNRLRRVTSDRGSASTDYLVDDSQKLPYHT----GG--NETLYKLMLLRSSFVLYILALHIA  340 (347)
Q Consensus       276 ------s~n~e~d~aRnRf~r~~s~~~s~~sD~~v~~~~krpySs----g~--g~~lrRlmLlRsafVlYIl~LHI~  340 (347)
                            .+...+++++-|++.....   .++|..|.++||++|++    |+  |+||||||..|++||+|+++||+|
T Consensus       438 ~~~~~~~~~~~~~d~~~r~~~~~~~---~~~d~~~~~r~~~a~~~iD~~~ir~g~fLrr~p~~R~~~i~Y~~~LhlW  511 (511)
T PF09787_consen  438 PSSILMKYSNSEDDAESRVPLLMKD---SPHDIGVARRVKRAASVIDSFSIRLGIFLRRYPMARIFVIIYMALLHLW  511 (511)
T ss_pred             CchhhHhhccCCCchhhhhhhhccC---CCccchHHHHHHHHHHHHhHhhHHHHHHHhcCHHHHHHHHHHHHHHcCC
Confidence                  1222478888888775444   45565677999988853    44  999999999999999999999999

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=99.42  E-value=9.2e-12  Score=125.29  Aligned_cols=111  Identities=21%  Similarity=0.117  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHhhhhcC----CcchhhhhccccccccCCCCCCcchhh
Q 019002          229 EKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLRRRIEGS----NVEEDTARNRLRRVTSDRGSASTDYLV  304 (347)
Q Consensus       229 Ek~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~l~Rn~~s~----n~e~d~aRnRf~r~~s~~~s~~sD~~v  304 (347)
                      -+.|+.++|-||+-|++||.++|.++++.|.+..+||||....-+..+-    |.-+.+++-+.      ++.-..|..-
T Consensus       426 ~~~l~~~~~qLt~tl~qkq~~le~v~~~~~~ln~~lerLq~~~N~~~~v~~~~~~n~~~~~~~~------v~~l~~d~~~  499 (554)
T KOG4677|consen  426 VDALFTTKNQLTYTLKQKQIGLERVVEILHKLNAPLERLQEYVNLVEDVDTKLNLNTKFKCHDV------VIDLYRDLKD  499 (554)
T ss_pred             HHHHhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhccccccceeeccCCCcccccc------cchHhhhhhh
Confidence            4568999999999999999999999999999999999998776544332    22222222221      1211222100


Q ss_pred             ------hcccCCcccccCchhHHHHHHHHHHHHHHHHHHHHHhheee
Q 019002          305 ------DDSQKLPYHTGGNETLYKLMLLRSSFVLYILALHIAVFIKI  345 (347)
Q Consensus       305 ------~~~~krpySsg~g~~lrRlmLlRsafVlYIl~LHI~VfIkL  345 (347)
                            ....-+-+|+..+.++||||..|++||+||++||+|||||+
T Consensus       500 ~~q~r~a~s~VD~~s~~l~~~lr~~psArif~~~YmallHLWvmivl  546 (554)
T KOG4677|consen  500 RQQLRAARSKVDKGSAELEKILRLLPSARIFWKNYMALLHLWVMIVL  546 (554)
T ss_pred             hHHHHHHHhhcchhhHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHH
Confidence                  00011333444499999999999999999999999999986

>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins

Probab=98.45  E-value=4.4e-06  Score=78.26  Aligned_cols=184  Identities=23%  Similarity=0.255  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcch---hhhh---------hhcccch----hhhhhhHHHHH
Q 019002          128 IQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTE---SILA---------DKAGVDT----DALRSDIAEKL  191 (347)
Q Consensus       128 ~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~---s~~~---------~~a~~~~----e~~~s~il~~L  191 (347)
                      ..+...+..++.+...+-.+|..+|..++...........++   +..+         +...+..    ..-.+.||.=+
T Consensus         5 q~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~siLpIV   84 (248)
T PF08172_consen    5 QKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSILPIV   84 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccHHHHH
Confidence            455667788888888888889999999987755544333322   1111         0111110    00112233222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHH
Q 019002          192 EVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLR  271 (347)
Q Consensus       192 e~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~l~  271 (347)
                      -+                      |.+-+|     +|-.+||.+|+.       -+.++..|..|+..++.+=.+|=+--
T Consensus        85 ts----------------------QRDRFR-----~Rn~ELE~elr~-------~~~~~~~L~~Ev~~L~~DN~kLYEKi  130 (248)
T PF08172_consen   85 TS----------------------QRDRFR-----QRNAELEEELRK-------QQQTISSLRREVESLRADNVKLYEKI  130 (248)
T ss_pred             HH----------------------HHHHHH-----HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11                      111221     233445554444       34556667788888888888887777


Q ss_pred             hhhhcCCc------chhhhhccccccccCCCCCCcchhhh------cccCCcc-cccCchhHHHH---------------
Q 019002          272 RRIEGSNV------EEDTARNRLRRVTSDRGSASTDYLVD------DSQKLPY-HTGGNETLYKL---------------  323 (347)
Q Consensus       272 Rn~~s~n~------e~d~aRnRf~r~~s~~~s~~sD~~v~------~~~krpy-Ssg~g~~lrRl---------------  323 (347)
                      |=++|-+.      +....++..+......+..+.|....      ...-.|| ++..-|-.|||               
T Consensus       131 RylqSY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~e~~rY~~~YE~~l~PF~~F~~~E~~R~~~~L~~~eR~~ls~~r  210 (248)
T PF08172_consen  131 RYLQSYNNKGSGSSSSAVSNSPGRSSVSPEPGGSSDVESNRYSSAYEESLNPFAAFRKRERQRRYKRLSPPERIFLSLTR  210 (248)
T ss_pred             HHHhhCcccccCCCcccccCCCCcccCCCCCCCCCchhHHHHHHHHHhccChHHHHhHhhHHHHHhcCChHHHHHHHHHH
Confidence            77776432      12222222222222222222232110      1222555 22233333333               


Q ss_pred             -----HHHHHHHHHHHHHHHHHhheee
Q 019002          324 -----MLLRSSFVLYILALHIAVFIKI  345 (347)
Q Consensus       324 -----mLlRsafVlYIl~LHI~VfIkL  345 (347)
                           ..-|.+|++|.++||+|||+++
T Consensus       211 ~vL~nr~~R~~f~~Y~l~LH~lvf~~l  237 (248)
T PF08172_consen  211 FVLSNRTTRMLFFFYCLGLHLLVFFVL  237 (248)
T ss_pred             HHhcChhhHHHHHHHHHHHHHHHHHHH
Confidence                 2469999999999999999976

These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=96.89  E-value=0.34  Score=50.73  Aligned_cols=31  Identities=23%  Similarity=0.292  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhHHhhhHHH
Q 019002          238 SLIEQLEVKQTQAEGLVSEIHLKEKELETLN  268 (347)
Q Consensus       238 SLtEqL~~KQaQaE~L~tE~nalelqLErLn  268 (347)
                      .+...+...+.+...+..+++.++.+++++.
T Consensus       898 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~  928 (1179)
T TIGR02168       898 ELSEELRELESKRSELRRELEELREKLAQLE  928 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333444444444444444443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR00606 rad50 rad50

Probab=96.84  E-value=0.39  Score=53.73  Aligned_cols=213  Identities=13%  Similarity=0.184  Sum_probs=122.6

Q ss_pred             HHHhhhHHHHHHHHHHhhhcCCCcccccccchhhhhhhhhhhhhhhhhccccchHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019002           42 RELDQKAASLSRLIRDLRLRLPPPDISQRLPHLHAHSLAYSAALSQQLSSHSSTREQTQLREVTLQEENAAYEKAISSCE  121 (347)
Q Consensus        42 ~eLd~kAasL~rsiqdLRlRlPPp~isQrLPhLhAhSLAs~aaLalqlnaHSat~eQaq~Re~tlqeenaayekAis~c~  121 (347)
                      ..+......+.+.|.+|.-.+++-.-.           .+-..|--++.+.....+.....-..++++-....+.|...+
T Consensus       795 ~r~~~ei~~l~~qie~l~~~l~~~~~~-----------~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq  863 (1311)
T TIGR00606       795 ERFQMELKDVERKIAQQAAKLQGSDLD-----------RTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLK  863 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccc-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455677788888899888888854431           133445555555555555554444455555555555555553


Q ss_pred             HHH----------HHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcccchhhhhhhHHHHH
Q 019002          122 SRI----------QEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALRSDIAEKL  191 (347)
Q Consensus       122 ~~i----------~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~~s~il~~L  191 (347)
                      .++          .++++.-..|...|.++..--..+++++..+...+.--.       ..-..+...-+.++...-.+.
T Consensus       864 ~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~  936 (1311)
T TIGR00606       864 SKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLE-------TFLEKDQQEKEELISSKETSN  936 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-------HHHHHHHHHHHHHHHHHHHHH
Confidence            332          223333333333333333333333333333332222111       111111111111222222356


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHH
Q 019002          192 EVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLR  271 (347)
Q Consensus       192 e~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~l~  271 (347)
                      +....++..+...+..|..-|..|+.-.-.. .|.| =+.++..+..+..++..-++..+.+..+++.++.++..++...
T Consensus       937 ~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~~-~~~q-L~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~k 1014 (1311)
T TIGR00606       937 KKAQDKVNDIKEKVKNIHGYMKDIENKIQDG-KDDY-LKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQE 1014 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6777788889999999999999999866555 3333 2357777777777788888888888888888888888887777


Q ss_pred             hhh
Q 019002          272 RRI  274 (347)
Q Consensus       272 Rn~  274 (347)
                      |++
T Consensus      1015 r~l 1017 (1311)
T TIGR00606      1015 RWL 1017 (1311)
T ss_pred             HHH
Confidence            766

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=96.51  E-value=1.2  Score=46.89  Aligned_cols=35  Identities=29%  Similarity=0.376  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHH
Q 019002          234 KQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLN  268 (347)
Q Consensus       234 krLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn  268 (347)
                      .++..+.+.+...+.+...+..++..++-++..++
T Consensus       447 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~  481 (1179)
T TIGR02168       447 EELEELQEELERLEEALEELREELEEAEQALDAAE  481 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444444444443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=96.47  E-value=0.055  Score=57.43  Aligned_cols=58  Identities=28%  Similarity=0.426  Sum_probs=43.4

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCc
Q 019002          102 REVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKF  167 (347)
Q Consensus       102 Re~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s  167 (347)
                      =+..+.+|.+.....|+..+++...|.-+...|..+|+.-        .++|...++|..-+.-..
T Consensus       304 ~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~--------sDYeeIK~ELsiLk~ief  361 (629)
T KOG0963|consen  304 LEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSR--------SDYEEIKKELSILKAIEF  361 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------ccHHHHHHHHHHHHHhhc
Confidence            3567889999999999999999999999988888888775        455555555544443333

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=96.44  E-value=0.45  Score=50.28  Aligned_cols=34  Identities=26%  Similarity=0.186  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHh
Q 019002          239 LIEQLEVKQTQAEGLVSEIHLKEKELETLNGLRR  272 (347)
Q Consensus       239 LtEqL~~KQaQaE~L~tE~nalelqLErLn~l~R  272 (347)
                      +.+.+...+.++..+..+++.++.++.++.....
T Consensus       460 ~~~~~~~~~~~l~~~~~~l~~l~~~l~~l~~~~~  493 (1164)
T TIGR02169       460 LAADLSKYEQELYDLKEEYDRVEKELSKLQRELA  493 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333344444444444444444444443333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=96.17  E-value=1.1  Score=49.88  Aligned_cols=73  Identities=12%  Similarity=0.221  Sum_probs=47.9

Q ss_pred             hhccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhh
Q 019002           88 QLSSHSSTREQTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMN  160 (347)
Q Consensus        88 qlnaHSat~eQaq~Re~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~  160 (347)
                      +++...........|-..+..+...+++.+...+.+|.....+.........+++.....+....+..+..+.
T Consensus       296 ~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~  368 (1163)
T COG1196         296 EIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLS  368 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555556666666666666666677777777777777777777766655566666666666666666555554

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.99  E-value=0.59  Score=50.19  Aligned_cols=156  Identities=20%  Similarity=0.283  Sum_probs=97.4

Q ss_pred             chHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhh
Q 019002           94 STREQTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILA  173 (347)
Q Consensus        94 at~eQaq~Re~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~  173 (347)
                      ..|+..+.|-..|+.+-..--+=|..|++.+..=...+..|..++++..+...+|...+++.-..+...+..        
T Consensus       558 ~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~--------  629 (717)
T PF10168_consen  558 LAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPV--------  629 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--------
Confidence            345555666666666666666666777777666666667777777777777778877777776555432221        


Q ss_pred             hhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhH-HHHHHHHHHHHHHHHHHHHHhhh
Q 019002          174 DKAGVDTDALRSDIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQRE-KMLNKQLHSLIEQLEVKQTQAEG  252 (347)
Q Consensus       174 ~~a~~~~e~~~s~il~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQRE-k~LEkrLhSLtEqL~~KQaQaE~  252 (347)
                         ..++|   .++.++|+..+.++..|...+..+-++|...+...-++-++.... ..=+.|...+.+-|.+-=.++..
T Consensus       630 ---LS~AE---r~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~~~~~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~  703 (717)
T PF10168_consen  630 ---LSEAE---REFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIESQKSPKKKSIVLSESQKRTIKEILKQQGEEIDE  703 (717)
T ss_pred             ---CCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCHHHHHHHHHHHHHHHHHHHH
Confidence               12222   345688999999999999999999999986544332333332221 11244555666666665556666


Q ss_pred             hhhhhhhhHHh
Q 019002          253 LVSEIHLKEKE  263 (347)
Q Consensus       253 L~tE~nalelq  263 (347)
                      ++.+++.+...
T Consensus       704 ~v~~ik~i~~~  714 (717)
T PF10168_consen  704 LVKQIKNIKKI  714 (717)
T ss_pred             HHHHHHHHHHh
Confidence            66666655443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=95.85  E-value=0.74  Score=42.34  Aligned_cols=143  Identities=19%  Similarity=0.311  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcccchhhhhhhHH-HHHHHHHHHHHHH
Q 019002          123 RIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALRSDIA-EKLEVKKKELSSM  201 (347)
Q Consensus       123 ~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~~s~il-~~Le~kk~el~~~  201 (347)
                      ++.+--..++...+.++.++.-....-..++.++..+..........    +...-++.. +-.++ .+|+.-..-+...
T Consensus        65 kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~----e~k~~E~~r-kl~~~E~~Le~aEeR~e~~  139 (237)
T PF00261_consen   65 KLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEA----ERKYEEVER-KLKVLEQELERAEERAEAA  139 (237)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH----HHHHHHCHH-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH-HHHHHHHHHHHHHHHHhhh
Confidence            44444444555555555555555555555555554444333222111    000001110 11122 2555555556667


Q ss_pred             HHHHHHHHHHHHHHhHhhhcCCC-----hHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHH
Q 019002          202 EERVQELEKKWAQVQNDALKQPS-----PAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLR  271 (347)
Q Consensus       202 e~~v~~lek~w~~vq~~alk~Ps-----paQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~l~  271 (347)
                      |.++..||.+-..| .+.+|.+.     -.+|+..+|.+++.|+++|..=-..+|.....++.|+.++.+|+.-.
T Consensus       140 E~ki~eLE~el~~~-~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL  213 (237)
T PF00261_consen  140 ESKIKELEEELKSV-GNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDEL  213 (237)
T ss_dssp             HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHH-HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777776666 44555433     27899999999999999999999999999988888888888885443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=95.84  E-value=1.1  Score=47.28  Aligned_cols=153  Identities=22%  Similarity=0.295  Sum_probs=68.4

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcccchhhhh
Q 019002          105 TLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALR  184 (347)
Q Consensus       105 tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~~  184 (347)
                      .|.+++..-.+-|...+..+.....+...|....+++......+..+.+.+.........++..-.+.. ...-......
T Consensus       161 ~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi-~~l~qk~~E~  239 (546)
T PF07888_consen  161 QLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDI-KTLTQKEKEQ  239 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            344444444444555555555555666667777777777677776666666554433332222210000 0000000111


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 019002          185 SDIAEKLEVKKKELSSMEERVQ-ELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIH  258 (347)
Q Consensus       185 s~il~~Le~kk~el~~~e~~v~-~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~n  258 (347)
                      ..++++++..+.++..++..++ .|...=..+++.-...-..-+.-..|-.+|+++=++|.+.|.+++.|..|.-
T Consensus       240 e~~~~~lk~~~~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~  314 (546)
T PF07888_consen  240 EKELDKLKELKAELEQLEAELKQRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQEQLQASQQEAELLRKELS  314 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1123344444444444442222 2222212222111111112222234556677777777777777777766643

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PHA02562 46 endonuclease subunit; Provisional

Probab=95.42  E-value=2.1  Score=42.46  Aligned_cols=19  Identities=5%  Similarity=-0.246  Sum_probs=13.3

Q ss_pred             chhHHHHHHHHHHHHHHHH
Q 019002          317 NETLYKLMLLRSSFVLYIL  335 (347)
Q Consensus       317 g~~lrRlmLlRsafVlYIl  335 (347)
                      |+..+|+.|.|.+..-.++
T Consensus       471 ~Ge~~r~~la~~l~~~~~~  489 (562)
T PHA02562        471 QGEKARIDLALLFTWRDVA  489 (562)
T ss_pred             hhHHHHHHHHHHHHHHHHH
Confidence            6678889988887643333

>PRK11637 AmiB activator; Provisional

Probab=95.41  E-value=3.1  Score=41.11  Aligned_cols=53  Identities=17%  Similarity=0.280  Sum_probs=26.2

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHH
Q 019002          103 EVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKV  155 (347)
Q Consensus       103 e~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~  155 (347)
                      ...++.+....++.|..++.+|.+..++...+..++..++.--..+..+++..
T Consensus        70 ~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~  122 (428)
T PRK11637         70 RASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ  122 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555555555555555555555555555555544444333333333333

>TIGR00606 rad50 rad50

Probab=95.07  E-value=1.7  Score=48.92  Aligned_cols=86  Identities=19%  Similarity=0.251  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHH
Q 019002          189 EKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLN  268 (347)
Q Consensus       189 ~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn  268 (347)
                      .+++....+...++.++..|+.+|..+.+..++--.-.++-..|+.+|..|.+.+.+=.+..+.+..++.-+...++++.
T Consensus       843 ~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~  922 (1311)
T TIGR00606       843 SKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQ  922 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence            34555577777888888888888888887777666677777889999999988887777777777777777777777776


Q ss_pred             HHHhhh
Q 019002          269 GLRRRI  274 (347)
Q Consensus       269 ~l~Rn~  274 (347)
                      ..+..+
T Consensus       923 ~~~~~~  928 (1311)
T TIGR00606       923 QEKEEL  928 (1311)
T ss_pred             HHHHHH
Confidence            666554

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=95.02  E-value=4.8  Score=43.41  Aligned_cols=195  Identities=19%  Similarity=0.249  Sum_probs=123.9

Q ss_pred             hhhhhhhhhccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhh
Q 019002           81 YSAALSQQLSSHSSTREQTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMN  160 (347)
Q Consensus        81 s~aaLalqlnaHSat~eQaq~Re~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~  160 (347)
                      .--.|=.|++.|..+..++..-=.-++.||.-.++-|.+..+.-|.-.+-...|+++|.|....-..+.++|-+..++-.
T Consensus       440 ~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~  519 (697)
T PF09726_consen  440 SEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARK  519 (697)
T ss_pred             hHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45567778888888877777767778999999999999999988888899999999999988877777777766554432


Q ss_pred             hccCCCcch-hhhhhhcccchhhhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh---------hcCCChHH
Q 019002          161 TSKSGKFTE-SILADKAGVDTDALRSD---IAEKLEVKKKELSSMEERVQELEKKWAQVQNDA---------LKQPSPAQ  227 (347)
Q Consensus       161 ~~q~~~s~~-s~~~~~a~~~~e~~~s~---il~~Le~kk~el~~~e~~v~~lek~w~~vq~~a---------lk~PspaQ  227 (347)
                      .....+.-. ..+...-+.-+|+.|..   +=.++...+.||+.-|+.++.||++-..+....         |-.-=.+-
T Consensus       520 ~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~am  599 (697)
T PF09726_consen  520 EEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAM  599 (697)
T ss_pred             HHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence            211111000 00011112334445433   334777788888888888888888764333221         11011133


Q ss_pred             hHHH--HHHHHH-------HHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHhhhh
Q 019002          228 REKM--LNKQLH-------SLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLRRRIE  275 (347)
Q Consensus       228 REk~--LEkrLh-------SLtEqL~~KQaQaE~L~tE~nalelqLErLn~l~Rn~~  275 (347)
                      +||.  ||.-|.       .|.--|-.-..|+|.+..-+..++.|++-|+.-.-.+.
T Consensus       600 qdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~  656 (697)
T PF09726_consen  600 QDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLL  656 (697)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4432  444333       24455555667888888888888888888875444444

; GO: 0016021 integral to membrane

>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin

Probab=94.63  E-value=1.8  Score=40.93  Aligned_cols=79  Identities=15%  Similarity=0.278  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 019002          128 IQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALRSDIAEKLEVKKKELSSMEERVQE  207 (347)
Q Consensus       128 ~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~~s~il~~Le~kk~el~~~e~~v~~  207 (347)
                      ++-...|+.--+--|.+|..||.+||.-...+.+.|........+...  .++..++    +.|.+|..-+=.+|..+-.
T Consensus         9 Q~AL~~LQaa~ekRE~lE~rLR~~lE~EL~~lr~qq~~~~~~~~~~~~--~~~~~L~----~~LrEkEErILaLEad~~k   82 (205)
T PF12240_consen    9 QQALAQLQAACEKREQLERRLRTRLERELESLRAQQRQGNSSGSSSPS--NNASNLK----ELLREKEERILALEADMTK   82 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCC--CcHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence            444567777777889999999999999999999988776554111111  3344443    6677766655555555554


Q ss_pred             HHHHH
Q 019002          208 LEKKW  212 (347)
Q Consensus       208 lek~w  212 (347)
                      .|.+.
T Consensus        83 WEqkY   87 (205)
T PF12240_consen   83 WEQKY   87 (205)
T ss_pred             HHHHH
Confidence            44444

Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=94.62  E-value=2  Score=46.86  Aligned_cols=165  Identities=21%  Similarity=0.276  Sum_probs=116.8

Q ss_pred             cccchHHHHHHHHHHhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCC
Q 019002           91 SHSSTREQTQLREVTLQEENAAYEKAISSCESR----IQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGK  166 (347)
Q Consensus        91 aHSat~eQaq~Re~tlqeenaayekAis~c~~~----i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~  166 (347)
                      +++++-.-++   .+|-+=+..|++.|...+..    -+++..+.+.++..+++....=..|..+|...+..+...+..+
T Consensus       426 ~d~~~~~~~~---~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~  502 (775)
T PF10174_consen  426 ADSSNEDEAL---ETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEA  502 (775)
T ss_pred             ccccchHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHH
Confidence            4444444433   57777888888888874433    4677888899999999999888899999999998888888777


Q ss_pred             cchhhhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHH
Q 019002          167 FTESILADKAGVDTDALRSDIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVK  246 (347)
Q Consensus       167 s~~s~~~~~a~~~~e~~~s~il~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~K  246 (347)
                      |.-..+..+...+-+.+    -=.|+.++.+...|+..+..           +-..|--..|-..||...-..-+-...-
T Consensus       503 s~l~s~~~K~~s~i~~l----~I~lEk~rek~~kl~~ql~k-----------~~~~~e~~~r~~~Le~ev~~~~ee~~ka  567 (775)
T PF10174_consen  503 SKLASSQEKKDSEIERL----EIELEKKREKHEKLEKQLEK-----------LRANAELRDRIQQLEQEVTRYREESEKA  567 (775)
T ss_pred             HHHhhccchhhhHHHHH----HHHHHHhhhHHHHHHHHHHH-----------HHhCHhhcchHHHHHHHHHHHHHHHHHH
Confidence            66644444443333322    13788888888888877775           2233444566777888887777777777


Q ss_pred             HHHhhhhh-------hhhhhhHHhhhHHHHHHhh
Q 019002          247 QTQAEGLV-------SEIHLKEKELETLNGLRRR  273 (347)
Q Consensus       247 QaQaE~L~-------tE~nalelqLErLn~l~Rn  273 (347)
                      |+-+|.|.       +|+|.++++.-+|....+.
T Consensus       568 q~EVERLl~~L~~~E~EK~~ke~ki~~LekeLek  601 (775)
T PF10174_consen  568 QAEVERLLDILREAENEKNDKEKKIGELEKELEK  601 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            87777665       6888998888888765443

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PHA02562 46 endonuclease subunit; Provisional

Probab=94.56  E-value=5.5  Score=39.63  Aligned_cols=15  Identities=33%  Similarity=0.430  Sum_probs=5.8

Q ss_pred             HHhhhHHHHHHHHHH
Q 019002           43 ELDQKAASLSRLIRD   57 (347)
Q Consensus        43 eLd~kAasL~rsiqd   57 (347)
                      ++..+-..|...|..
T Consensus       178 e~~~~i~~l~~~i~~  192 (562)
T PHA02562        178 ELNQQIQTLDMKIDH  192 (562)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333344444433

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=94.46  E-value=5.8  Score=44.55  Aligned_cols=99  Identities=24%  Similarity=0.410  Sum_probs=65.7

Q ss_pred             hcccchhhhhhhHHHHHHHHHHHHH---HHHHHHHHH----HHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHH
Q 019002          175 KAGVDTDALRSDIAEKLEVKKKELS---SMEERVQEL----EKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQ  247 (347)
Q Consensus       175 ~a~~~~e~~~s~il~~Le~kk~el~---~~e~~v~~l----ek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQ  247 (347)
                      ..|+|+..+. .+-.+++..+++|+   ..+..|.+-    +..|..+..-....|.-..+...++.++..|-+++..++
T Consensus       765 ~~GvD~~~I~-~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~  843 (1201)
T PF12128_consen  765 GKGVDPERIQ-QLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQLQ  843 (1201)
T ss_pred             hCCCCHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566665551 23334444444444   344455543    446888888888888888888999999999999999988


Q ss_pred             HHhhhhhhh----hhhhHHhhhHHHHHHhhh
Q 019002          248 TQAEGLVSE----IHLKEKELETLNGLRRRI  274 (347)
Q Consensus       248 aQaE~L~tE----~nalelqLErLn~l~Rn~  274 (347)
                      +..+....+    ++.++.++.+++...+++
T Consensus       844 ~~~~~~~~~le~~~~~~~~~~~~~~~~l~~l  874 (1201)
T PF12128_consen  844 KEVKQRRKELEEELKALEEQLEQLEEQLRRL  874 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            877765544    556666666776666654

>PRK04863 mukB cell division protein MukB; Provisional

Probab=94.43  E-value=4.2  Score=47.30  Aligned_cols=47  Identities=4%  Similarity=0.033  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHhhhhc
Q 019002          230 KMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLRRRIEG  276 (347)
Q Consensus       230 k~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~l~Rn~~s  276 (347)
                      .+|+..+...-+++.+++.++..+..+.+.++..++.++..+..+.+
T Consensus       438 EeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~  484 (1486)
T PRK04863        438 DNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRK  484 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34999999999999999999999999999999999999888887754

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=94.38  E-value=3.4  Score=46.05  Aligned_cols=19  Identities=32%  Similarity=0.550  Sum_probs=10.2

Q ss_pred             HHHhhhHHHHHHHHHHhhhc
Q 019002           42 RELDQKAASLSRLIRDLRLR   61 (347)
Q Consensus        42 ~eLd~kAasL~rsiqdLRlR   61 (347)
                      ..|++.-..|.| |.+++-.
T Consensus       179 ~~L~~~~~nl~~-~~~~~~e  197 (1163)
T COG1196         179 RKLERTEENLER-LEDLLEE  197 (1163)
T ss_pred             HHHHHHHHHHHH-HHHHHHH
Confidence            445555555555 5555543

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=94.17  E-value=6.7  Score=39.09  Aligned_cols=175  Identities=27%  Similarity=0.354  Sum_probs=96.5

Q ss_pred             ccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcch
Q 019002           90 SSHSSTREQTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTE  169 (347)
Q Consensus        90 naHSat~eQaq~Re~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~  169 (347)
                      -+-++|++|.+.|-.+|+.+|.-...=+..+..+.              +-+..--..|+..--+++             
T Consensus        16 ~~S~~t~~~l~~~~~sL~qen~~Lk~El~~ek~~~--------------~~L~~e~~~lr~~sv~~~-------------   68 (310)
T PF09755_consen   16 SSSSATREQLRKRIESLQQENRVLKRELETEKARC--------------KHLQEENRALREASVRIQ-------------   68 (310)
T ss_pred             CCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH-------------
Confidence            34567889999999999998765443333332222              222111122222222221             


Q ss_pred             hhhhhhcccchhhhhhhHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHH-------
Q 019002          170 SILADKAGVDTDALRSDIAEKLEVKKKELSSM--------EERVQELEKKWAQVQNDALKQPSPAQREKMLNK-------  234 (347)
Q Consensus       170 s~~~~~a~~~~e~~~s~il~~Le~kk~el~~~--------e~~v~~lek~w~~vq~~alk~PspaQREk~LEk-------  234 (347)
                          .+|-.+.|..+-.++++|+..|+|-..+        |--+..|.++..+++.+-.      +.|..||.       
T Consensus        69 ----~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~------~lE~~Le~EqE~~V~  138 (310)
T PF09755_consen   69 ----AKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKV------ELENQLEQEQEYLVN  138 (310)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhHHHHHH
Confidence                1222234455555666666666665544        3345667777777776642      44444443       


Q ss_pred             HHHHHHHHH----HHHHHHhhhhhhhhhhhHHhhhHH-----HHHHhhhhcCCcchhhhhccccccccCCCCCCcch
Q 019002          235 QLHSLIEQL----EVKQTQAEGLVSEIHLKEKELETL-----NGLRRRIEGSNVEEDTARNRLRRVTSDRGSASTDY  302 (347)
Q Consensus       235 rLhSLtEqL----~~KQaQaE~L~tE~nalelqLErL-----n~l~Rn~~s~n~e~d~aRnRf~r~~s~~~s~~sD~  302 (347)
                      +|..=|..|    ..||..+|.|..|+--+|..||.=     |.+|.+...-+.+--.-.-++....+. |.+|.|.
T Consensus       139 kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~-~~s~~d~  214 (310)
T PF09755_consen  139 KLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSA-PPSPRDT  214 (310)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCC-CCCcchH
Confidence            333444444    478888889999988887777763     778877755444333333444444333 3344444

>PRK04863 mukB cell division protein MukB; Provisional

Probab=94.15  E-value=4.1  Score=47.36  Aligned_cols=59  Identities=15%  Similarity=0.277  Sum_probs=51.7

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhcc
Q 019002          105 TLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSK  163 (347)
Q Consensus       105 tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q  163 (347)
                      .+-||-+.|.+-...++.++.+...-...+...++|++.....|+.+.+.+..-+....
T Consensus       283 ~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~e  341 (1486)
T PRK04863        283 VHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQ  341 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677799999999999999999999999999999999999999999999987765544

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=93.99  E-value=1.8  Score=45.74  Aligned_cols=40  Identities=25%  Similarity=0.310  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHH
Q 019002          230 KMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNG  269 (347)
Q Consensus       230 k~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~  269 (347)
                      ..|-.||...+.++.++++++..+..|...+..+|-.+..
T Consensus       258 ~eLk~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe  297 (546)
T PF07888_consen  258 AELKQRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQE  297 (546)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            3445677777777777777777776666666655555543

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=93.96  E-value=13  Score=41.45  Aligned_cols=105  Identities=15%  Similarity=0.165  Sum_probs=55.6

Q ss_pred             HHHHhHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCc
Q 019002          102 REVTLQEENAAYEKAISSC--------------ESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKF  167 (347)
Q Consensus       102 Re~tlqeenaayekAis~c--------------~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s  167 (347)
                      +..++.+....|++++..+              +...++.......+...++.....-..+..++..++..+...=.   
T Consensus       683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~---  759 (1047)
T PRK10246        683 ELTALQNRIQQLTPLLETLPQSDDLPHSEETVALDNWRQVHEQCLSLHSQLQTLQQQDVLEAQRLQKAQAQFDTALQ---  759 (1047)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            4555666677777777766              44444444555556666666665556666666666655543211   


Q ss_pred             chhhhhhhcccchhh-hhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019002          168 TESILADKAGVDTDA-LRSDI--AEKLEVKKKELSSMEERVQELEKKWAQVQ  216 (347)
Q Consensus       168 ~~s~~~~~a~~~~e~-~~s~i--l~~Le~kk~el~~~e~~v~~lek~w~~vq  216 (347)
                             +.|..++. .....  -.+++..+.++...++.+..+...+...+
T Consensus       760 -------~~~f~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~  804 (1047)
T PRK10246        760 -------ASVFDDQQAFLAALLDEETLTQLEQLKQNLENQRQQAQTLVTQTA  804 (1047)
T ss_pred             -------hCCCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   11221111 11000  13455556666777777766666666544

>PRK03918 chromosome segregation protein; Provisional

Probab=93.45  E-value=12  Score=39.52  Aligned_cols=20  Identities=15%  Similarity=0.456  Sum_probs=11.7

Q ss_pred             HHHHhhhHHHHHHHHHHhhh
Q 019002           41 VRELDQKAASLSRLIRDLRL   60 (347)
Q Consensus        41 v~eLd~kAasL~rsiqdLRl   60 (347)
                      +..|..+...+...|..|+-
T Consensus       407 i~~l~~~~~~~~~~i~eL~~  426 (880)
T PRK03918        407 ISKITARIGELKKEIKELKK  426 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            44555556666666666663

>PRK02224 chromosome segregation protein; Provisional

Probab=93.35  E-value=13  Score=39.55  Aligned_cols=28  Identities=21%  Similarity=0.345  Sum_probs=14.2

Q ss_pred             ccCHHHHHHHHHHhhhHHHHHHHHHHhh
Q 019002           32 VFTEEQQKYVRELDQKAASLSRLIRDLR   59 (347)
Q Consensus        32 ~ft~~Q~~~v~eLd~kAasL~rsiqdLR   59 (347)
                      -|..+-...+..+...-..|...|.+++
T Consensus       468 ~~~~~~~~~~~~~~~~~~~le~~l~~~~  495 (880)
T PRK02224        468 ETIEEDRERVEELEAELEDLEEEVEEVE  495 (880)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444455555555555555555554

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=92.97  E-value=8  Score=46.36  Aligned_cols=158  Identities=20%  Similarity=0.338  Sum_probs=92.3

Q ss_pred             hhhhhhhhccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhh
Q 019002           82 SAALSQQLSSHSSTREQTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNT  161 (347)
Q Consensus        82 ~aaLalqlnaHSat~eQaq~Re~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~  161 (347)
                      -..|.+||.+-..+..=|..++..+..+...-++-+.+...++.+-.++...|..+.++++..-..|+..+++.+..+.-
T Consensus       875 ~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k  954 (1930)
T KOG0161|consen  875 KNDLQEQLQAEKENLAEAEELLERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQK  954 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566666655555555666666666666666666666666666666666666666666665555666666555533221


Q ss_pred             ccCCCcchhhhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHH
Q 019002          162 SKSGKFTESILADKAGVDTDALRSDIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIE  241 (347)
Q Consensus       162 ~q~~~s~~s~~~~~a~~~~e~~~s~il~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtE  241 (347)
                      .                  +..+...-.++++.++++..+++.+..|-|+                 -|.||.++..|..
T Consensus       955 ~------------------~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~ke-----------------kk~lEe~~~~l~~  999 (1930)
T KOG0161|consen  955 L------------------ELEKNAAENKLKNLEEEINSLDENISKLSKE-----------------KKELEERIRELQD  999 (1930)
T ss_pred             H------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHH
Confidence            1                  1111111234444444555444444444333                 2458888888888


Q ss_pred             HHHHHHHHhhhhhhhhhhhHHhhhHHHHHHhhh
Q 019002          242 QLEVKQTQAEGLVSEIHLKEKELETLNGLRRRI  274 (347)
Q Consensus       242 qL~~KQaQaE~L~tE~nalelqLErLn~l~Rn~  274 (347)
                      .|......+.+++--++-++-+|..++....+-
T Consensus      1000 ~l~~~eek~~~l~k~~~kle~~l~~le~~le~e 1032 (1930)
T KOG0161|consen 1000 DLQAEEEKAKSLNKAKAKLEQQLDDLEVTLERE 1032 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888887777777765444333

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=92.91  E-value=1.4  Score=47.40  Aligned_cols=111  Identities=30%  Similarity=0.388  Sum_probs=82.2

Q ss_pred             cchHHHHH--HHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCc
Q 019002           93 SSTREQTQ--LREVT---LQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKF  167 (347)
Q Consensus        93 Sat~eQaq--~Re~t---lqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s  167 (347)
                      |-++++.+  -.+.|   .-.+...|+|-|..|+.+++.-..|...|...+.||+..=.+|+++|+.+...++ ...++.
T Consensus       395 ~~~~e~~~p~e~~~~~~~e~~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~-~~~~~~  473 (652)
T COG2433         395 SKVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR-DKVRKD  473 (652)
T ss_pred             HHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhh
Confidence            34455544  23334   3345689999999999999999999999999999999999999999999987665 111111


Q ss_pred             chhhhhhhcccchhhhhhhH--H-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019002          168 TESILADKAGVDTDALRSDI--A-EKLEVKKKELSSMEERVQELEKKWAQ  214 (347)
Q Consensus       168 ~~s~~~~~a~~~~e~~~s~i--l-~~Le~kk~el~~~e~~v~~lek~w~~  214 (347)
                      -+          .+.....|  | .+|++++++.+.|+.++..|+|-|.+
T Consensus       474 re----------i~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~~l  513 (652)
T COG2433         474 RE----------IRARDRRIERLEKELEEKKKRVEELERKLAELRKMRKL  513 (652)
T ss_pred             HH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            11          11121222  3 48999999999999999999999986

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=92.70  E-value=8.5  Score=42.26  Aligned_cols=63  Identities=30%  Similarity=0.427  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHH
Q 019002          190 KLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNG  269 (347)
Q Consensus       190 ~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~  269 (347)
                      +|..|+.|+..+..+...++..-.-                 .-.++.-|=++|.+|+..++-|.+|+.+++.+||+-+.
T Consensus       295 eL~rk~~E~~~~qt~l~~~~~~~~d-----------------~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~  357 (775)
T PF10174_consen  295 ELSRKKSELEALQTRLETLEEQDSD-----------------MRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNS  357 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            5666666666666666655543221                 22344555555555555555555555555555555433

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PRK11637 AmiB activator; Provisional

Probab=92.68  E-value=11  Score=37.21  Aligned_cols=46  Identities=11%  Similarity=0.256  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhc
Q 019002          117 ISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTS  162 (347)
Q Consensus       117 is~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~  162 (347)
                      |...+.+|..-..++..+...+++++.--..+..+++.++..++..
T Consensus        77 l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~  122 (428)
T PRK11637         77 LKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ  122 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333444444444444444444444444444433

>PRK09039 hypothetical protein; Validated

Probab=92.67  E-value=11  Score=37.06  Aligned_cols=79  Identities=18%  Similarity=0.210  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh----HHhh
Q 019002          189 EKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLK----EKEL  264 (347)
Q Consensus       189 ~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nal----elqL  264 (347)
                      ++|.+.|.+.+...-+|+.|..+-+.+..-          =..|+..|.+.-++...+|.+++.|..+++..    ..+|
T Consensus       123 ~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q----------la~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l  192 (343)
T PRK09039        123 QELDSEKQVSARALAQVELLNQQIAALRRQ----------LAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQEL  192 (343)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567777777776666666666665554433          33478888888888888999999998888876    4566


Q ss_pred             hHHHHHH----hhhhcC
Q 019002          265 ETLNGLR----RRIEGS  277 (347)
Q Consensus       265 ErLn~l~----Rn~~s~  277 (347)
                      ++.....    |.+.+.
T Consensus       193 ~~~~~~~~~~l~~~~~~  209 (343)
T PRK09039        193 NRYRSEFFGRLREILGD  209 (343)
T ss_pred             HHhHHHHHHHHHHHhCC
Confidence            7665555    555544

>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1

Probab=92.51  E-value=1.2  Score=39.24  Aligned_cols=87  Identities=22%  Similarity=0.348  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHH
Q 019002          190 KLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNG  269 (347)
Q Consensus       190 ~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~  269 (347)
                      ..+..-.+.+...+.+..|...|..|++.+              ..||.-.|+|..+|+.++.+..+|+..=.=-+.|+.
T Consensus        15 ~~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT--------------~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~   80 (157)
T PF04136_consen   15 ECDQLLDQTDEILDQLDELQEQYNSVSEKT--------------NSLHEACEQLLEEQTRLEELAEEISEKLQYFEELDP   80 (157)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHH
Confidence            344445556677778888999999998876              369999999999999999999999999888899999


Q ss_pred             HHhhhhcCCcchhhhhccccccc
Q 019002          270 LRRRIEGSNVEEDTARNRLRRVT  292 (347)
Q Consensus       270 l~Rn~~s~n~e~d~aRnRf~r~~  292 (347)
                      +.|.+-+++..  +.+..|...+
T Consensus        81 itr~Ln~p~~s--V~~~~F~~~L  101 (157)
T PF04136_consen   81 ITRRLNSPGSS--VNSDSFKPML  101 (157)
T ss_pred             HHHHHcCCCCc--ccchHHHHHH
Confidence            99999876543  3366666543

This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane

>PRK11281 hypothetical protein; Provisional

Probab=92.38  E-value=22  Score=40.61  Aligned_cols=40  Identities=18%  Similarity=0.087  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHhhh
Q 019002          235 QLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLRRRI  274 (347)
Q Consensus       235 rLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~l~Rn~  274 (347)
                      ..+.|.+.|.+--...+.++.+--..+.+++++++..||+
T Consensus       286 ~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i  325 (1113)
T PRK11281        286 INLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNI  325 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3666777777666678888888888888888888888877

>PRK02224 chromosome segregation protein; Provisional

Probab=92.19  E-value=18  Score=38.42  Aligned_cols=38  Identities=26%  Similarity=0.213  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHH
Q 019002          232 LNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNG  269 (347)
Q Consensus       232 LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~  269 (347)
                      ++..+....+++..+...++.+..|+..++.+++..+.
T Consensus       521 l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~  558 (880)
T PRK02224        521 LEELIAERRETIEEKRERAEELRERAAELEAEAEEKRE  558 (880)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344455555555666666666666666555544443

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=92.19  E-value=3.5  Score=44.45  Aligned_cols=136  Identities=21%  Similarity=0.309  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchh--hhhhhcccchhhhhhhHHHHHHHHHHH
Q 019002          120 CESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTES--ILADKAGVDTDALRSDIAEKLEVKKKE  197 (347)
Q Consensus       120 c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s--~~~~~a~~~~e~~~s~il~~Le~kk~e  197 (347)
                      .+..++--.+.=..|+..+.-++..|..++.+|.+++.+.+.-|.+.....  --.++..+.+      +=++|.+.++-
T Consensus       430 LraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~------LEkrL~eE~~~  503 (697)
T PF09726_consen  430 LRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQ------LEKRLAEERRQ  503 (697)
T ss_pred             HHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence            334444444444566666666777777777777777777776666655541  1111111110      11233333333


Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhhcCC-C------------hHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHH
Q 019002          198 LSSMEERVQELEKKWAQVQNDALKQP-S------------PAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEK  262 (347)
Q Consensus       198 l~~~e~~v~~lek~w~~vq~~alk~P-s------------paQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalel  262 (347)
                      -.++|.++++-.|.=-. ++++-..| .            =-+|.++||..+.-|--.|.+|+-+.-.+..|+..++.
T Consensus       504 R~~lEkQL~eErk~r~~-ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~  580 (697)
T PF09726_consen  504 RASLEKQLQEERKARKE-EEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRK  580 (697)
T ss_pred             HHHHHHHHHHHHHHHhH-HHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455555544433222 22233333 1            14688999999999999999999998888888865554

; GO: 0016021 integral to membrane

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=92.00  E-value=2.1  Score=37.97  Aligned_cols=96  Identities=24%  Similarity=0.325  Sum_probs=77.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh---hcCCChHHhH-HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 019002          185 SDIAEKLEVKKKELSSMEERVQELEKKWAQVQNDA---LKQPSPAQRE-KMLNKQLHSLIEQLEVKQTQAEGLVSEIHLK  260 (347)
Q Consensus       185 s~il~~Le~kk~el~~~e~~v~~lek~w~~vq~~a---lk~PspaQRE-k~LEkrLhSLtEqL~~KQaQaE~L~tE~nal  260 (347)
                      -.|.++|+.-+.+-++++++|-.||.+..++|.+-   .+..=-++++ -.|+-++..||..|-.=...+.++..|+-.+
T Consensus         6 l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L   85 (140)
T PF10473_consen    6 LHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENL   85 (140)
T ss_pred             HHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35789999999999999999999999999999873   3333334444 2378888888888888888889999999999


Q ss_pred             HHhhhHHHHHHhhhhcCCcc
Q 019002          261 EKELETLNGLRRRIEGSNVE  280 (347)
Q Consensus       261 elqLErLn~l~Rn~~s~n~e  280 (347)
                      ..+|+...+.-..+.+.+++
T Consensus        86 ~k~lq~~q~kv~eLE~~~~~  105 (140)
T PF10473_consen   86 DKELQKKQEKVSELESLNSS  105 (140)
T ss_pred             HHHHHHHHHHHHHHHHHhHH
Confidence            99998888887777776653

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=91.62  E-value=6  Score=36.44  Aligned_cols=171  Identities=16%  Similarity=0.235  Sum_probs=83.0

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcccc-----
Q 019002          105 TLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVD-----  179 (347)
Q Consensus       105 tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~-----  179 (347)
                      .++.+...|+.-+..|+.++.+.-..+......+..|..--..|-.+++.++..+...+.+-...+...+...--     
T Consensus         5 ~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE   84 (237)
T PF00261_consen    5 QLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLE   84 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456666677777777777766666555555555544444444444444444443333333322221111111000     


Q ss_pred             ----hhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh----hcCCChHHhHHHHHHHHHHHHHHHHHHHHHh
Q 019002          180 ----TDALRSDIA-EKLEVKKKELSSMEERVQELEKKWAQVQNDA----LKQPSPAQREKMLNKQLHSLIEQLEVKQTQA  250 (347)
Q Consensus       180 ----~e~~~s~il-~~Le~kk~el~~~e~~v~~lek~w~~vq~~a----lk~PspaQREk~LEkrLhSLtEqL~~KQaQa  250 (347)
                          ....+-.-+ ..|+..+.-....+.+..+.+.+-.+|+.+-    -+--+-..+=+.||.+|+.+..+|-.-++.-
T Consensus        85 ~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~  164 (237)
T PF00261_consen   85 NREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASE  164 (237)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhh
Confidence                000010001 1222333333333333333333333332221    1111224566779999999999998877777


Q ss_pred             hhhhhhhhhhHHhhhHHHHHHhhhh
Q 019002          251 EGLVSEIHLKEKELETLNGLRRRIE  275 (347)
Q Consensus       251 E~L~tE~nalelqLErLn~l~Rn~~  275 (347)
                      +-...-....+.++..|+.......
T Consensus       165 ~~~~~re~~~e~~i~~L~~~lkeaE  189 (237)
T PF00261_consen  165 EKASEREDEYEEKIRDLEEKLKEAE  189 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            6666655666666666666555553

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=91.38  E-value=18  Score=41.42  Aligned_cols=160  Identities=19%  Similarity=0.259  Sum_probs=107.6

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHH----------HhhhccCCCcchhhhhh
Q 019002          105 TLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQT----------AMNTSKSGKFTESILAD  174 (347)
Q Consensus       105 tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~----------~~~~~q~~~s~~s~~~~  174 (347)
                      -|..+.|-.++=|--.++...||.--...|+..|.-|+.-=.+|+.+..+.+.          ++++...++...+.+.-
T Consensus       174 hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~yk  253 (1195)
T KOG4643|consen  174 HLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYK  253 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccc
Confidence            45566677777777777777777755555555555555444555555554443          34444445544455666


Q ss_pred             hcccchhhhhhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHH
Q 019002          175 KAGVDTDALRSDIAEKLEVKKK-------ELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQ  247 (347)
Q Consensus       175 ~a~~~~e~~~s~il~~Le~kk~-------el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQ  247 (347)
                      ++.+|-+..+    +.+++.|.       +-.-|++++|.|++.=..        -||.--=-.|-+++|-|-.+...-|
T Consensus       254 erlmDs~fyk----dRveelkedN~vLleekeMLeeQLq~lrarse~--------~tleseiiqlkqkl~dm~~erdtdr  321 (1195)
T KOG4643|consen  254 ERLMDSDFYK----DRVEELKEDNRVLLEEKEMLEEQLQKLRARSEG--------ATLESEIIQLKQKLDDMRSERDTDR  321 (1195)
T ss_pred             hhhhhhHHHH----HHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccc--------CChHHHHHHHHHHHHHHHHhhhhHH
Confidence            7777777776    33333333       344678888877764321        2232222347889999999999999


Q ss_pred             HHhhhhhhhhhhhHHhhhHHHHHHhhhhc
Q 019002          248 TQAEGLVSEIHLKEKELETLNGLRRRIEG  276 (347)
Q Consensus       248 aQaE~L~tE~nalelqLErLn~l~Rn~~s  276 (347)
                      .|.|-|..|.--++++=+.|+.+|-.++.
T Consensus       322 ~kteeL~eEnstLq~q~eqL~~~~ellq~  350 (1195)
T KOG4643|consen  322 HKTEELHEENSTLQVQKEQLDGQMELLQI  350 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhHhhh
Confidence            99999999999999999999999988875

>PRK11281 hypothetical protein; Provisional

Probab=91.07  E-value=18  Score=41.26  Aligned_cols=34  Identities=12%  Similarity=0.264  Sum_probs=23.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 019002          185 SDIAEKLEVKKKELSSMEERVQELEKKWAQVQND  218 (347)
Q Consensus       185 s~il~~Le~kk~el~~~e~~v~~lek~w~~vq~~  218 (347)
                      ..+..+|+...+.|+.++..+..+...++..|..
T Consensus       131 ~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~  164 (1113)
T PRK11281        131 AQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAA  164 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHH
Confidence            3456677777888887777777777766666543

>PF14992 TMCO5: TMCO5 family

Probab=90.76  E-value=14  Score=36.33  Aligned_cols=38  Identities=24%  Similarity=0.363  Sum_probs=28.6

Q ss_pred             cccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 019002          176 AGVDTDALRSDIAEKLEVKKKELSSMEERVQELEKKWAQVQN  217 (347)
Q Consensus       176 a~~~~e~~~s~il~~Le~kk~el~~~e~~v~~lek~w~~vq~  217 (347)
                      .+.+.+..+    ..|+.-|..+..+.+.+..+||+|..|+.
T Consensus       100 ~~~e~~~~~----~~lq~sk~~lqql~~~~~~qE~ei~kve~  137 (280)
T PF14992_consen  100 VQCEDPQLS----QSLQFSKNKLQQLLESCASQEKEIAKVED  137 (280)
T ss_pred             CCCCccchh----cccHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            445555554    45666668888899999999999999876

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=90.42  E-value=36  Score=38.54  Aligned_cols=84  Identities=21%  Similarity=0.280  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhH-------hhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHh
Q 019002          191 LEVKKKELSSMEERVQELEKKWAQVQN-------DALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKE  263 (347)
Q Consensus       191 Le~kk~el~~~e~~v~~lek~w~~vq~-------~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelq  263 (347)
                      +...+.++..++..+...+..=..|-+       .=.+-|+--.+...|+.+++.+..++..-+.+.+.+.++.+....+
T Consensus       773 I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  852 (1201)
T PF12128_consen  773 IQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRKE  852 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444555555555443222221       1122344444888999999999999999999999999999998888


Q ss_pred             hhHHHHHHhhh
Q 019002          264 LETLNGLRRRI  274 (347)
Q Consensus       264 LErLn~l~Rn~  274 (347)
                      ++.--+..+..
T Consensus       853 le~~~~~~~~~  863 (1201)
T PF12128_consen  853 LEEELKALEEQ  863 (1201)
T ss_pred             HHHHHHHHHHH
Confidence            87765555544

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=90.42  E-value=11  Score=32.77  Aligned_cols=62  Identities=27%  Similarity=0.340  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 019002          189 EKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLK  260 (347)
Q Consensus       189 ~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nal  260 (347)
                      +.++..+.++.+++..+..+++++..++          +-.++...+...+.+++..=++..+.+..-++..
T Consensus       123 ~~~~~~~~~l~~l~~~~~~~~~e~~~l~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  184 (191)
T PF04156_consen  123 ELLKSVEERLDSLDESIKELEKEIRELQ----------KELQDSREEVQELRSQLERLQENLQQLEEKIQEL  184 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666677777777777777777766          2223344444444444444444444444333333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=90.31  E-value=14  Score=33.80  Aligned_cols=31  Identities=32%  Similarity=0.504  Sum_probs=26.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 019002          228 REKMLNKQLHSLIEQLEVKQTQAEGLVSEIH  258 (347)
Q Consensus       228 REk~LEkrLhSLtEqL~~KQaQaE~L~tE~n  258 (347)
                      |.=.||++|..|.++|..|.+|+..+..--|
T Consensus       144 kn~lLEkKl~~l~~~lE~keaqL~evl~~~n  174 (201)
T PF13851_consen  144 KNLLLEKKLQALSEQLEKKEAQLNEVLAAAN  174 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            4557999999999999999999998876544

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=89.88  E-value=20  Score=41.57  Aligned_cols=18  Identities=28%  Similarity=0.394  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 019002          231 MLNKQLHSLIEQLEVKQT  248 (347)
Q Consensus       231 ~LEkrLhSLtEqL~~KQa  248 (347)
                      +++.+.+||.+-+-+++.
T Consensus       627 ~l~~~i~sL~~~~~~~~~  644 (1317)
T KOG0612|consen  627 ELKEEISSLEETLKAGKK  644 (1317)
T ss_pred             HHHhHHHHHHHHHHhhhh
Confidence            455555555555444443

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=89.32  E-value=34  Score=36.60  Aligned_cols=161  Identities=19%  Similarity=0.242  Sum_probs=108.8

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcch------hhhhhhc
Q 019002          103 EVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTE------SILADKA  176 (347)
Q Consensus       103 e~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~------s~~~~~a  176 (347)
                      ...|-+|-...+.+.++-+...+.|++++..++.+.+++..-=....+.+..+..+++......+-.      -+-++|-
T Consensus       421 R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI  500 (594)
T PF05667_consen  421 RAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNI  500 (594)
T ss_pred             HhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhH
Confidence            3467778888888888888889999999999999888886644444444455555554433332221      1111111


Q ss_pred             ccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----hhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 019002          177 GVDTDALRSDIAEKLEVKKKELSSMEERVQELEKKWAQVQN----DALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEG  252 (347)
Q Consensus       177 ~~~~e~~~s~il~~Le~kk~el~~~e~~v~~lek~w~~vq~----~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~  252 (347)
                      --..+.. ..|+.+-....+|++++.+++.   .-|.++.+    +|-|.++ +++==-+=-.||+.-++|+..=.-.=.
T Consensus       501 ~KQk~eI-~KIl~DTr~lQkeiN~l~gkL~---RtF~v~dElifrdAKkDe~-~rkaYK~La~lh~~c~~Li~~v~~tG~  575 (594)
T PF05667_consen  501 RKQKEEI-EKILSDTRELQKEINSLTGKLD---RTFTVTDELIFRDAKKDEA-ARKAYKLLASLHENCSQLIETVEETGT  575 (594)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            1111111 3378888888899998888755   66777665    4555553 444444556899999999999888889


Q ss_pred             hhhhhhhhHHhhhHHH
Q 019002          253 LVSEIHLKEKELETLN  268 (347)
Q Consensus       253 L~tE~nalelqLErLn  268 (347)
                      +..||--||-+++...
T Consensus       576 ~~rEirdLe~qI~~e~  591 (594)
T PF05667_consen  576 ISREIRDLEEQIDTES  591 (594)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999988765

>PRK09039 hypothetical protein; Validated

Probab=88.56  E-value=10  Score=37.27  Aligned_cols=89  Identities=11%  Similarity=0.144  Sum_probs=59.9

Q ss_pred             HHHHHHhhhHHHHHHHHHHhhhcCCCcccccccchhhhhhhhhhhhhhhhhccccchHHHHHHHHHHhHHHH--------
Q 019002           39 KYVRELDQKAASLSRLIRDLRLRLPPPDISQRLPHLHAHSLAYSAALSQQLSSHSSTREQTQLREVTLQEEN--------  110 (347)
Q Consensus        39 ~~v~eLd~kAasL~rsiqdLRlRlPPp~isQrLPhLhAhSLAs~aaLalqlnaHSat~eQaq~Re~tlqeen--------  110 (347)
                      ..+..+|.+-+.|+.-|-+             ||.+...-...++.|-..+....++.+.++.+...|+.-.        
T Consensus        46 ~~i~~~~~eL~~L~~qIa~-------------L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~  112 (343)
T PRK09039         46 REISGKDSALDRLNSQIAE-------------LADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGA  112 (343)
T ss_pred             HHHhhHHHHHHHHHHHHHH-------------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence            3456666777777777766             8999999999999999888888888888877777666532        


Q ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 019002          111 ------AAYEKAISSCESRIQEKIQEADSLRRKLKE  140 (347)
Q Consensus       111 ------aayekAis~c~~~i~ek~~ea~~L~~~l~e  140 (347)
                            +.++.++.+.+..+.|....+..|...+..
T Consensus       113 ~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~a  148 (343)
T PRK09039        113 AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAA  148 (343)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence                  223344455555555555555555554443

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=88.48  E-value=25  Score=40.22  Aligned_cols=26  Identities=31%  Similarity=0.514  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019002          187 IAEKLEVKKKELSSMEERVQELEKKW  212 (347)
Q Consensus       187 il~~Le~kk~el~~~e~~v~~lek~w  212 (347)
                      +....+.+|.+...++..|.++++.-
T Consensus       363 ~~n~i~~~k~~~d~l~k~I~~~~~~~  388 (1074)
T KOG0250|consen  363 IENSIRKLKKEVDRLEKQIADLEKQT  388 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34466667777777777777777655

>PF13514 AAA_27: AAA domain

Probab=88.33  E-value=47  Score=37.07  Aligned_cols=168  Identities=22%  Similarity=0.330  Sum_probs=80.8

Q ss_pred             HHHHHHhhhHHHHHHHHHHhhhcCCCcccccccchhhhhhhhhhhhhhhhhccccchHHHHHHHHHHhHHHHHHHHHHHH
Q 019002           39 KYVRELDQKAASLSRLIRDLRLRLPPPDISQRLPHLHAHSLAYSAALSQQLSSHSSTREQTQLREVTLQEENAAYEKAIS  118 (347)
Q Consensus        39 ~~v~eLd~kAasL~rsiqdLRlRlPPp~isQrLPhLhAhSLAs~aaLalqlnaHSat~eQaq~Re~tlqeenaayekAis  118 (347)
                      ..++.+++....+...+..|--+++|+-- . .|.   .  ..-..|.-.|+...    +.+.+-..++++...+++.+.
T Consensus       750 ~ri~~~~~~~~~f~~~~~~L~~~l~~~~~-~-~~~---~--~~~~~L~~~l~~a~----~~~~~~~~l~~~~~~~~~~~~  818 (1111)
T PF13514_consen  750 RRIEQMEADLAAFEEQVAALAERLGPDLP-E-DPA---E--EALEALRARLEEAR----EAQEERERLQEQLEELEEELE  818 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCcccc-c-CcH---H--HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence            45666777777777777777777776411 1 111   0  11112222222221    222233356666666777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHh-----HHHH------HHhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcccchhhhhh--
Q 019002          119 SCESRIQEKIQEADSLRRKL-----KEMD------EMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALRS--  185 (347)
Q Consensus       119 ~c~~~i~ek~~ea~~L~~~l-----~eme------~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~~s--  185 (347)
                      .++..+.+-..+...|....     .++.      .....|..++..++..+...-++.+-+.-...-++.+.+.+..  
T Consensus       819 ~~~~~l~~~~~~l~~L~~~a~~~~~e~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~e~~~~d~~~l~~~l  898 (1111)
T PF13514_consen  819 QAEEELEELEAELAELLEQAGVEDEEELREAEERAEERRELREELEDLERQLERQADGLDLEELEEELEELDPDELEAEL  898 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHhhccCHHHHHHHH
Confidence            77666666655555544311     1111      2234566677777777655444443332222222334443321  


Q ss_pred             -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 019002          186 -DIAEKLEVKKKELSSMEERVQELEKKWAQVQN  217 (347)
Q Consensus       186 -~il~~Le~kk~el~~~e~~v~~lek~w~~vq~  217 (347)
                       .+-.+++....++..+.+.+..++.+...+..
T Consensus       899 ~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~  931 (1111)
T PF13514_consen  899 EELEEELEELEEELEELQEERAELEQELEALEG  931 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence             12234444444555555555555555555544

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=88.08  E-value=23  Score=41.14  Aligned_cols=88  Identities=13%  Similarity=0.223  Sum_probs=53.0

Q ss_pred             hhhhhhhhhccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhHHHHHHhHHHHHHHHH--
Q 019002           81 YSAALSQQLSSHSSTREQTQLREVTLQEENAAYEKAISSCESRIQEKIQEAD----SLRRKLKEMDEMENNLASELDK--  154 (347)
Q Consensus        81 s~aaLalqlnaHSat~eQaq~Re~tlqeenaayekAis~c~~~i~ek~~ea~----~L~~~l~eme~~E~~l~~ele~--  154 (347)
                      +.+=+|...+-|..+.+=.+---.+..-|+--|-.-.-.-+..|.++..++.    .+..++++.+......++.+.+  
T Consensus       332 ~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~  411 (1293)
T KOG0996|consen  332 SRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLT  411 (1293)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4667788888888888777666666664444444445556666666666655    5666666666655555554443  


Q ss_pred             -----HHHHhhhccCCCcc
Q 019002          155 -----VQTAMNTSKSGKFT  168 (347)
Q Consensus       155 -----~~~~~~~~q~~~s~  168 (347)
                           ++++++......+.
T Consensus       412 ~k~kKleke~ek~~~~~~e  430 (1293)
T KOG0996|consen  412 SKIKKLEKEIEKARRKKSE  430 (1293)
T ss_pred             HHHHHHHHHHHHHHhhHHH
Confidence                 44444444444443

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=87.76  E-value=25  Score=33.21  Aligned_cols=53  Identities=11%  Similarity=0.265  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhh
Q 019002          108 EENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMN  160 (347)
Q Consensus       108 eenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~  160 (347)
                      ++...|+.....+.+++.....+...+...++.++..-..+++++..++..++
T Consensus       130 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~  182 (423)
T TIGR01843       130 GQQSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELE  182 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444444444444444444555555554443

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=87.36  E-value=32  Score=39.97  Aligned_cols=14  Identities=21%  Similarity=0.729  Sum_probs=9.6

Q ss_pred             hhhhhHhhhhhcCC
Q 019002            3 GLLAWAADVVKAHK   16 (347)
Q Consensus         3 GlLAWAaDVVgg~g   16 (347)
                      |+|=+-=|+||-++
T Consensus       251 GmLEYLEDIIGT~r  264 (1293)
T KOG0996|consen  251 GMLEYLEDIIGTNR  264 (1293)
T ss_pred             hHHHHHHHHhcccc
Confidence            66667777777665

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=87.13  E-value=47  Score=38.17  Aligned_cols=30  Identities=20%  Similarity=0.200  Sum_probs=22.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019002          106 LQEENAAYEKAISSCESRIQEKIQEADSLR  135 (347)
Q Consensus       106 lqeenaayekAis~c~~~i~ek~~ea~~L~  135 (347)
                      .++++.+|.|.|.+.-.++++-.++...+.
T Consensus        63 ~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~   92 (1109)
T PRK10929         63 SLERAKQYQQVIDNFPKLSAELRQQLNNER   92 (1109)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence            456788888888888888877777666443

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=86.90  E-value=25  Score=32.37  Aligned_cols=130  Identities=22%  Similarity=0.291  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchh-hhhhhcccchhhhhhhHHHHHHHHHH
Q 019002          118 SSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTES-ILADKAGVDTDALRSDIAEKLEVKKK  196 (347)
Q Consensus       118 s~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s-~~~~~a~~~~e~~~s~il~~Le~kk~  196 (347)
                      ++.-+-|+--..|+.-|+..|......+..+...+-....++...++...--. -..++.+++-+.+    -.+|...+.
T Consensus        57 ~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL----~~kL~~~~~  132 (194)
T PF15619_consen   57 AELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREEL----QRKLSQLEQ  132 (194)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHH----HHHHHHHHH
Confidence            44445566666677777777777666666666666666655554433333221 2223444444433    356666667


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHH
Q 019002          197 ELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLR  271 (347)
Q Consensus       197 el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~l~  271 (347)
                      +|..-+.+++.||+.-..                    -..+..-+|....--.-.+..++..+..++++|++.-
T Consensus       133 ~l~~~~~ki~~Lek~leL--------------------~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~kl  187 (194)
T PF15619_consen  133 KLQEKEKKIQELEKQLEL--------------------ENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKL  187 (194)
T ss_pred             HHHHHHHHHHHHHHHHHH--------------------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777777777664333                    2333344444444444555566666666666666543

>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea

Probab=86.89  E-value=13  Score=29.04  Aligned_cols=92  Identities=18%  Similarity=0.284  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcch--hhhhhhcccch--hhhhhhHHHHHHHHHHHHHH
Q 019002          125 QEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTE--SILADKAGVDT--DALRSDIAEKLEVKKKELSS  200 (347)
Q Consensus       125 ~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~--s~~~~~a~~~~--e~~~s~il~~Le~kk~el~~  200 (347)
                      |+.+.+...|...+..+..--..|..++.+...+++.-....+..  -...|+.....  +.....|-++.+..+.+++.
T Consensus         1 Qe~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~   80 (106)
T PF01920_consen    1 QELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKK   80 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            455556666666666666666666655555554444333332221  12223333222  22233344455556666666


Q ss_pred             HHHHHHHHHHHHHHHh
Q 019002          201 MEERVQELEKKWAQVQ  216 (347)
Q Consensus       201 ~e~~v~~lek~w~~vq  216 (347)
                      ++.....++++-..++
T Consensus        81 l~~~~~~l~~~l~~~~   96 (106)
T PF01920_consen   81 LEKQLKYLEKKLKELK   96 (106)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            6666666666554433

Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.

>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []

Probab=86.78  E-value=7.5  Score=31.54  Aligned_cols=56  Identities=20%  Similarity=0.431  Sum_probs=47.2

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhh
Q 019002          105 TLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMN  160 (347)
Q Consensus       105 tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~  160 (347)
                      ++.-|...|...=.+++.+|...++|.+.++.++.+||..-.++|..+|.-...|.
T Consensus        15 ~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr   70 (79)
T PF08581_consen   15 NLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLR   70 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666777778899999999999999999999999999999999987665554

; PDB: 3VP9_B 3VP8_B.

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=86.71  E-value=19  Score=35.08  Aligned_cols=56  Identities=16%  Similarity=0.362  Sum_probs=18.2

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHH
Q 019002          100 QLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQ  156 (347)
Q Consensus       100 q~Re~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~  156 (347)
                      +.+-.....|...|...+...+ .-...-.+...+...++.++.-|..|..+|+.++
T Consensus        15 ~~~~~~~~~E~~~Y~~fL~~l~-~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE   70 (314)
T PF04111_consen   15 DKQLEQAEKERDTYQEFLKKLE-EESDSEEDIEELEEELEKLEQEEEELLQELEELE   70 (314)
T ss_dssp             ----------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-hcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455667777776665544 1112234455666677777777777777777666

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=86.64  E-value=56  Score=37.14  Aligned_cols=124  Identities=21%  Similarity=0.293  Sum_probs=76.8

Q ss_pred             HHHhhhHHHHHHHHHHhhhcCCCccccc--ccchhhhhhhhhhhhhhhhhccccc-hHHHHHHHHHH--hHHHHHHHHHH
Q 019002           42 RELDQKAASLSRLIRDLRLRLPPPDISQ--RLPHLHAHSLAYSAALSQQLSSHSS-TREQTQLREVT--LQEENAAYEKA  116 (347)
Q Consensus        42 ~eLd~kAasL~rsiqdLRlRlPPp~isQ--rLPhLhAhSLAs~aaLalqlnaHSa-t~eQaq~Re~t--lqeenaayekA  116 (347)
                      ...|.-+-.+.|.+++|+--+|---..+  +.|++-.+=.+-..+++-|-..--- --+|-|+|..-  |...-.--+||
T Consensus       329 d~~~~~~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q~eka  408 (980)
T KOG0980|consen  329 DPRELQIEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLASRTQLEKA  408 (980)
T ss_pred             ChhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666777788899999988887443333  3566666666666666654322111 11222333221  11222334555


Q ss_pred             H---HHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCC
Q 019002          117 I---SSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSG  165 (347)
Q Consensus       117 i---s~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~  165 (347)
                      +   ...++++.-..+-...+..+.-++...-..|..++++.++.+...+-.
T Consensus       409 ~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s  460 (980)
T KOG0980|consen  409 QVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQS  460 (980)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5   666677666666667778888888888888888888888877655443

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=86.61  E-value=41  Score=40.79  Aligned_cols=82  Identities=24%  Similarity=0.295  Sum_probs=71.0

Q ss_pred             hhhhhhhhhccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhh
Q 019002           81 YSAALSQQLSSHSSTREQTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMN  160 (347)
Q Consensus        81 s~aaLalqlnaHSat~eQaq~Re~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~  160 (347)
                      .-.-|.-||---..+..|.+.|---++.+.+-..|-|..++.+|.|-..+....+....+++..-.+|..+++.....++
T Consensus      1063 ~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Le 1142 (1930)
T KOG0161|consen 1063 QKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELE 1142 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556777777788888888888888889999999999999999999999999999999999999999999999998887


Q ss_pred             hc
Q 019002          161 TS  162 (347)
Q Consensus       161 ~~  162 (347)
                      -.
T Consensus      1143 e~ 1144 (1930)
T KOG0161|consen 1143 EQ 1144 (1930)
T ss_pred             HH
Confidence            65

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=86.38  E-value=24  Score=31.61  Aligned_cols=119  Identities=15%  Similarity=0.225  Sum_probs=71.3

Q ss_pred             hhhhhhhhhhccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHh
Q 019002           80 AYSAALSQQLSSHSSTREQTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAM  159 (347)
Q Consensus        80 As~aaLalqlnaHSat~eQaq~Re~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~  159 (347)
                      -..|-+||+-+-= ..-..|..|...+.+.-+.|++.+......+..=......|..++.+|..-...|++....++...
T Consensus        71 ~~~A~~Al~~g~e-dLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~  149 (221)
T PF04012_consen   71 EKQAELALAAGRE-DLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQK  149 (221)
T ss_pred             HHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445556554411 111356666677777777777777777777666666667777777777777777766666555433


Q ss_pred             hhccCCCcchhhhhhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 019002          160 NTSKSGKFTESILADKAGVDTDALRSDIAEKLEVKKKELSSMEERVQELEKKWAQVQNDAL  220 (347)
Q Consensus       160 ~~~q~~~s~~s~~~~~a~~~~e~~~s~il~~Le~kk~el~~~e~~v~~lek~w~~vq~~al  220 (347)
                      .......+..       .  .+            --..+..||+++..+|-+|....+-.-
T Consensus       150 ~~~~~~~~~~-------~--~~------------a~~~~er~e~ki~~~ea~a~a~~el~~  189 (221)
T PF04012_consen  150 KVNEALASFS-------V--SS------------AMDSFERMEEKIEEMEARAEASAELAD  189 (221)
T ss_pred             HHHHHhccCC-------c--cc------------hHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3222111110       0  11            123467889999999999988766554

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=86.11  E-value=27  Score=35.87  Aligned_cols=117  Identities=23%  Similarity=0.351  Sum_probs=82.8

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcccchhhhh
Q 019002          105 TLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALR  184 (347)
Q Consensus       105 tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~~  184 (347)
                      .+.|||.-.+--+-+..+.+.||-.|+..|.+.|.|+-...+.|-+|+...-.++                     -   
T Consensus       138 ~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq---------------------~---  193 (401)
T PF06785_consen  138 HLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQ---------------------H---  193 (401)
T ss_pred             HHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc---------------------h---
Confidence            3578999999999999999999999999999999999998888887764322110                     1   


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 019002          185 SDIAEKLEVKKKELSSMEERVQELEKKWAQ-------VQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAE  251 (347)
Q Consensus       185 s~il~~Le~kk~el~~~e~~v~~lek~w~~-------vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE  251 (347)
                          +-|+++..-++.+|.|||+|--+-..       .+++.-.+|+|.-++  +=+||-|=.++.+-|=--+|
T Consensus       194 ----~ml~kRQ~yI~~LEsKVqDLm~EirnLLQle~~~~e~~p~~~~~~s~~--v~~ql~selkkivf~~enie  261 (401)
T PF06785_consen  194 ----SMLDKRQAYIGKLESKVQDLMYEIRNLLQLESDMKESMPSTPSPSSQD--VPKQLVSELKKIVFKVENIE  261 (401)
T ss_pred             ----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcchhhh--hHHHHHHHHHHHHHHHhhHH
Confidence                23455666777888888886544432       234667789987777  44777666665555543333

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=85.60  E-value=16  Score=30.32  Aligned_cols=68  Identities=24%  Similarity=0.389  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcccchhhhhhhHHHHHHHHHH
Q 019002          117 ISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALRSDIAEKLEVKKK  196 (347)
Q Consensus       117 is~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~~s~il~~Le~kk~  196 (347)
                      +.-.|.|||.-.-.+.+|+..+.|+.+.-..|..+.+.+.                         +-++.+-.+-+..|.
T Consensus         6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~-------------------------~~r~~L~~en~qLk~   60 (79)
T PRK15422          6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQ-------------------------HQREELERENNHLKE   60 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------hhHHHHHHHHHHHHH
Confidence            4567899999999999999999999888888887776654                         112334467788889


Q ss_pred             HHHHHHHHHHHHH
Q 019002          197 ELSSMEERVQELE  209 (347)
Q Consensus       197 el~~~e~~v~~le  209 (347)
                      |...|++++..|=
T Consensus        61 E~~~WqerLr~LL   73 (79)
T PRK15422         61 QQNGWQERLQALL   73 (79)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998763

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=85.32  E-value=3.8  Score=36.66  Aligned_cols=49  Identities=27%  Similarity=0.346  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHhhhhcCCc
Q 019002          231 MLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLRRRIEGSNV  279 (347)
Q Consensus       231 ~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn~l~Rn~~s~n~  279 (347)
                      .|+.++..|-+.|..|+...|.|..|.-++.+++.-++...+.++..|.
T Consensus       127 ~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~  175 (194)
T PF08614_consen  127 QLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENR  175 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3888999999999999999999999999999999999999998876654

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.09  E-value=40  Score=33.03  Aligned_cols=133  Identities=21%  Similarity=0.261  Sum_probs=82.0

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhh
Q 019002           99 TQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLK----EMDEMENNLASELDKVQTAMNTSKSGKFTESILAD  174 (347)
Q Consensus        99 aq~Re~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~----eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~  174 (347)
                      .+.-..-+|.|......=|....+++.+..-+.+.+..+++    +++.+++++++.-+-+...+++-|...++.+  --
T Consensus        43 ~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG~~t~--Yi  120 (265)
T COG3883          43 LQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVNGTATS--YI  120 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhH--HH
Confidence            34444557777778888888888888888888888888876    5678888888888888888887765443331  11


Q ss_pred             hcccchhhh----------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHH
Q 019002          175 KAGVDTDAL----------------RSDIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHS  238 (347)
Q Consensus       175 ~a~~~~e~~----------------~s~il~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhS  238 (347)
                      +..++.++.                -..|++.++..|++|+-++..+.   ++-..+.-.        +  ++||.++.+
T Consensus       121 dvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~---~~~e~l~al--------~--~e~e~~~~~  187 (265)
T COG3883         121 DVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALE---DKLETLVAL--------Q--NELETQLNS  187 (265)
T ss_pred             HHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH--------H--HHHHHHHHH
Confidence            122222222                12367777777777766555544   443333321        2  336666666


Q ss_pred             HHHHHHHH
Q 019002          239 LIEQLEVK  246 (347)
Q Consensus       239 LtEqL~~K  246 (347)
                      |..|...|
T Consensus       188 L~~qk~e~  195 (265)
T COG3883         188 LNSQKAEK  195 (265)
T ss_pred             HHHHHHHH
Confidence            55554433

>PRK09343 prefoldin subunit beta; Provisional

Probab=84.74  E-value=23  Score=30.02  Aligned_cols=94  Identities=13%  Similarity=0.240  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcch--hhhhhhcccch--hhhhhhHHHHHHHHHH
Q 019002          121 ESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTE--SILADKAGVDT--DALRSDIAEKLEVKKK  196 (347)
Q Consensus       121 ~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~--s~~~~~a~~~~--e~~~s~il~~Le~kk~  196 (347)
                      ..++|..+.+...++.+++-+..--..|..++-..+..++.-..-.+..  =...|....-.  +..++++-++++-.+.
T Consensus         6 ~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie~   85 (121)
T PRK09343          6 PPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLEL   85 (121)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHHH
Confidence            3456666666666666666666666666665555444443333322222  23344433322  2233444445555555


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 019002          197 ELSSMEERVQELEKKWAQ  214 (347)
Q Consensus       197 el~~~e~~v~~lek~w~~  214 (347)
                      +++.+|.+...|+++-..
T Consensus        86 ~ik~lekq~~~l~~~l~e  103 (121)
T PRK09343         86 RSRTLEKQEKKLREKLKE  103 (121)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            555555555555554443

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=84.71  E-value=45  Score=33.21  Aligned_cols=58  Identities=19%  Similarity=0.267  Sum_probs=26.7

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhc
Q 019002          105 TLQEENAAYEKAISSCESRIQEKIQ--------EADSLRRKLKEMDEMENNLASELDKVQTAMNTS  162 (347)
Q Consensus       105 tlqeenaayekAis~c~~~i~ek~~--------ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~  162 (347)
                      -|..+...+++-+...+.++++=.+        +...+...+.+++.--.+.+.++..++..++.-
T Consensus       165 fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l  230 (498)
T TIGR03007       165 FIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDAL  230 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444443221        112344555555555555555555555544443

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=84.41  E-value=12  Score=34.75  Aligned_cols=74  Identities=14%  Similarity=0.258  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-cCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhH
Q 019002          188 AEKLEVKKKELSSMEERVQELEKKWAQVQNDAL-KQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKE  261 (347)
Q Consensus       188 l~~Le~kk~el~~~e~~v~~lek~w~~vq~~al-k~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nale  261 (347)
                      .+.|...++|+..++.++.++...|.....+-- +--...+-..+|+.++..|.++|..-|+.++.+..+...+.
T Consensus        92 ~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~  166 (206)
T PRK10884         92 RTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ  166 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467777888888888999999888885332110 00012333445777777777777776666665555544443

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=84.29  E-value=32  Score=39.10  Aligned_cols=75  Identities=24%  Similarity=0.336  Sum_probs=56.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhH
Q 019002          184 RSDIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKE  261 (347)
Q Consensus       184 ~s~il~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~nale  261 (347)
                      +-+|--.|.+-|.....+.++.++|||+-.+...+.-+   --|.-+.-|.-|.||++--+..|-|.+-+.+-+-.++
T Consensus       332 kadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~---i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e  406 (1265)
T KOG0976|consen  332 KADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRS---IQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLE  406 (1265)
T ss_pred             HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            45566688888999999999999999999987766532   2344455677788999888888888887776554433

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=84.23  E-value=22  Score=30.95  Aligned_cols=79  Identities=23%  Similarity=0.352  Sum_probs=51.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhh--------hh
Q 019002          186 DIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVS--------EI  257 (347)
Q Consensus       186 ~il~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~t--------E~  257 (347)
                      ++-.++...+.++..++..+..|+.+|..    -.+.||-.+    |...+..|.+.+.+-++.++.|..        |+
T Consensus        76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~----L~~~~t~~e----l~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~  147 (169)
T PF07106_consen   76 ELDAEIKELREELAELKKEVKSLEAELAS----LSSEPTNEE----LREEIEELEEEIEELEEKLEKLRSGSKPVSPEEK  147 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHH
Confidence            34456778888888888888888888887    567888876    445555555555555555555543        45


Q ss_pred             hhhHHhhhHHHHHHh
Q 019002          258 HLKEKELETLNGLRR  272 (347)
Q Consensus       258 nalelqLErLn~l~R  272 (347)
                      ..++.+..++...||
T Consensus       148 ~~~~~~~~~~~k~w~  162 (169)
T PF07106_consen  148 EKLEKEYKKWRKEWK  162 (169)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            555555555555554

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=84.03  E-value=57  Score=33.85  Aligned_cols=153  Identities=21%  Similarity=0.340  Sum_probs=78.1

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHH---HHHHHHHHHhhhccCCCcchhh-h
Q 019002           97 EQTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLA---SELDKVQTAMNTSKSGKFTESI-L  172 (347)
Q Consensus        97 eQaq~Re~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~---~ele~~~~~~~~~q~~~s~~s~-~  172 (347)
                      .+|+.....+..   +++.-+..|+..+.+.-.+...|...+.....++.+|.   .++..++.++.....+...... .
T Consensus       196 ~eAeee~~~~~~---~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~  272 (522)
T PF05701_consen  196 IEAEEERIEIAA---EREQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEA  272 (522)
T ss_pred             HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHh
Confidence            445544443332   23344455666666666666666666665666666554   5666666666665542222110 0


Q ss_pred             hhhcccchhhh---hh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHH
Q 019002          173 ADKAGVDTDAL---RS---DIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVK  246 (347)
Q Consensus       173 ~~~a~~~~e~~---~s---~il~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~K  246 (347)
                      ...-......+   +.   ..-..|+..+.|++.|...|..|..+-..+..+--   .--+|++.-.-...+|...|..=
T Consensus       273 ~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~---~lke~e~~a~~~v~~L~~eL~~~  349 (522)
T PF05701_consen  273 KEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELE---RLKEREKEASSEVSSLEAELNKT  349 (522)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHhhHHHHHHHH
Confidence            00000000011   11   11246677777777888888888777765543321   12245665555555666555555


Q ss_pred             HHHhhhhhh
Q 019002          247 QTQAEGLVS  255 (347)
Q Consensus       247 QaQaE~L~t  255 (347)
                      +..++++..
T Consensus       350 r~eLea~~~  358 (522)
T PF05701_consen  350 RSELEAAKA  358 (522)
T ss_pred             HHHHHHHHh
Confidence            555555433

Several sequences in this family are described as being myosin heavy chain-like.

>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.89  E-value=1.5  Score=38.41  Aligned_cols=38  Identities=18%  Similarity=0.203  Sum_probs=33.5

Q ss_pred             cCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 019002          221 KQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIH  258 (347)
Q Consensus       221 k~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~n  258 (347)
                      .-|+|.+-...||.+..-.+|.|.+|=+-+.+|+-+|.
T Consensus        19 ~~a~ss~~~~~le~ENee~~e~L~~kV~aLKsLs~dIg   56 (118)
T KOG3385|consen   19 SRASSSSHLASLERENEEAAESLQQKVKALKSLSLDIG   56 (118)
T ss_pred             cccCchhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence            34678888899999999999999999999999988775

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=82.83  E-value=15  Score=32.96  Aligned_cols=43  Identities=30%  Similarity=0.330  Sum_probs=8.9

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 019002           97 EQTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLK  139 (347)
Q Consensus        97 eQaq~Re~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~  139 (347)
                      .+.+.|-+++..++...++-+..+...|.+-..+...|..+++
T Consensus        91 ~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~  133 (194)
T PF08614_consen   91 GELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIK  133 (194)
T ss_dssp             -----------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444455544444444444444444444444444433

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal

Probab=82.79  E-value=25  Score=28.94  Aligned_cols=91  Identities=13%  Similarity=0.230  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcch--hhhhhhcccchh--hhhhhHHHHHHHHHHHHH
Q 019002          124 IQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTE--SILADKAGVDTD--ALRSDIAEKLEVKKKELS  199 (347)
Q Consensus       124 i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~--s~~~~~a~~~~e--~~~s~il~~Le~kk~el~  199 (347)
                      +++.+.+...++..++.+..--..|..++......++.-..-.+..  =...|......+  ...+++-+.++.....++
T Consensus         5 ~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~   84 (110)
T TIGR02338         5 VQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVK   84 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444555555555444444444444444443333332222  223333333322  222333344444444455


Q ss_pred             HHHHHHHHHHHHHHH
Q 019002          200 SMEERVQELEKKWAQ  214 (347)
Q Consensus       200 ~~e~~v~~lek~w~~  214 (347)
                      .++++...|+++-..
T Consensus        85 ~lek~~~~l~~~l~e   99 (110)
T TIGR02338        85 TLQRQEERLREQLKE   99 (110)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            555555555555444

Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=82.79  E-value=74  Score=34.27  Aligned_cols=21  Identities=19%  Similarity=0.425  Sum_probs=14.8

Q ss_pred             hhhHHHHHHHHHHhhhcCCCc
Q 019002           45 DQKAASLSRLIRDLRLRLPPP   65 (347)
Q Consensus        45 d~kAasL~rsiqdLRlRlPPp   65 (347)
                      =.+...|-|+|+.|+-.+.-|
T Consensus        49 ~~~V~eLE~sL~eLk~q~~~~   69 (617)
T PF15070_consen   49 ISRVQELERSLSELKNQMAEP   69 (617)
T ss_pred             HHHHHHHHHHHHHHHHhhccc
Confidence            356778888899988665433

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional

Probab=82.20  E-value=76  Score=33.97  Aligned_cols=42  Identities=17%  Similarity=0.296  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCC
Q 019002          121 ESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSG  165 (347)
Q Consensus       121 ~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~  165 (347)
                      ++.+..|..++.   ..++-+++--..++.+|+.++.++..-+..
T Consensus       255 ~~~l~~k~~~a~---~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~  296 (726)
T PRK09841        255 QQNIARQAAQDS---QSLEFLQRQLPEVRSELDQAEEKLNVYRQQ  296 (726)
T ss_pred             HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355666655553   344455555567788888888888765443

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.13  E-value=22  Score=38.78  Aligned_cols=141  Identities=25%  Similarity=0.313  Sum_probs=78.2

Q ss_pred             HHHHHHHHhHHHHHHhHHHHHHHHHHHHHhh--hccCCCcchhhhhhhcccchhh-hhh-----hHHH---H-------H
Q 019002          130 EADSLRRKLKEMDEMENNLASELDKVQTAMN--TSKSGKFTESILADKAGVDTDA-LRS-----DIAE---K-------L  191 (347)
Q Consensus       130 ea~~L~~~l~eme~~E~~l~~ele~~~~~~~--~~q~~~s~~s~~~~~a~~~~e~-~~s-----~il~---~-------L  191 (347)
                      |-..|..++.||+.-=...|.|+|..+.++.  -++++.+..++-+.+..+-.|+ .|-     .|++   +       |
T Consensus        44 eK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el  123 (772)
T KOG0999|consen   44 EKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQEL  123 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456788889999888888999998888764  4556666653333332222222 221     1433   3       4


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCh----HHhH-------HHHHHHHHHH---HHHHHHHHHHhhhhhhhh
Q 019002          192 EVKKKELSSMEERVQELEKKWAQVQNDALKQPSP----AQRE-------KMLNKQLHSL---IEQLEVKQTQAEGLVSEI  257 (347)
Q Consensus       192 e~kk~el~~~e~~v~~lek~w~~vq~~alk~Psp----aQRE-------k~LEkrLhSL---tEqL~~KQaQaE~L~tE~  257 (347)
                      .+++.|..+|+..++++-..=+.|+....+=-+.    --||       .+||...-||   .-.|-+-|--.|||.-||
T Consensus       124 ~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkhei  203 (772)
T KOG0999|consen  124 TNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEI  203 (772)
T ss_pred             HHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHH
Confidence            4455555566655555544444444332221111    0111       2344433333   334566677788999999


Q ss_pred             hhhHHhhhHHHHH
Q 019002          258 HLKEKELETLNGL  270 (347)
Q Consensus       258 nalelqLErLn~l  270 (347)
                      +-++-+.|=||.+
T Consensus       204 kRleEe~elln~q  216 (772)
T KOG0999|consen  204 KRLEEETELLNSQ  216 (772)
T ss_pred             HHHHHHHHHHHHH
Confidence            9888776666443

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=81.02  E-value=20  Score=37.78  Aligned_cols=52  Identities=21%  Similarity=0.361  Sum_probs=36.1

Q ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHh
Q 019002          108 EENAAYEK-AISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAM  159 (347)
Q Consensus       108 eenaayek-Ais~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~  159 (347)
                      +.-..|++ =+.|-++...++++|++.|...+.-++...+.....+-..++.+
T Consensus       339 ~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~  391 (493)
T KOG0804|consen  339 QIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKL  391 (493)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            44556777 67888888899999999988887777766655544444444333

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=80.16  E-value=1.2e+02  Score=35.07  Aligned_cols=39  Identities=21%  Similarity=0.373  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHH
Q 019002          112 AYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLAS  150 (347)
Q Consensus       112 ayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~  150 (347)
                      -.+..+..|.++|.++......++.++.+.+.....++.
T Consensus       292 ~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~  330 (1074)
T KOG0250|consen  292 KKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKD  330 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            333444455555555555555555555555544444443

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=80.01  E-value=92  Score=33.57  Aligned_cols=147  Identities=27%  Similarity=0.376  Sum_probs=70.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhH----HHHHHHHHHHHHhhhccCCCcch--hhhhhhcccc
Q 019002          106 LQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMEN----NLASELDKVQTAMNTSKSGKFTE--SILADKAGVD  179 (347)
Q Consensus       106 lqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~----~l~~ele~~~~~~~~~q~~~s~~--s~~~~~a~~~  179 (347)
                      ||-|-..|..-|..-....++|+++...-...|++-..--.    .|...|-.++..+.........+  |+.-..-..+
T Consensus         9 lq~Erd~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E   88 (617)
T PF15070_consen    9 LQAERDQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAE   88 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHH
Confidence            44555556666666656666666665555555544333332    33333333443333333222222  1111110111


Q ss_pred             hhhhhhh---HHHHHHHH---HHHHH----HHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHH-------------HHH
Q 019002          180 TDALRSD---IAEKLEVK---KKELS----SMEERVQELEKKWAQVQNDALKQPSPAQREKMLN-------------KQL  236 (347)
Q Consensus       180 ~e~~~s~---il~~Le~k---k~el~----~~e~~v~~lek~w~~vq~~alk~PspaQREk~LE-------------krL  236 (347)
                      .+.++..   +..+|+..   +..|+    ..|.++.+||+.+...++..      ..|.|.|+             .|.
T Consensus        89 ~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~------~D~~kLLe~lqsdk~t~SRAlsQN  162 (617)
T PF15070_consen   89 AEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQ------EDRQKLLEQLQSDKATASRALSQN  162 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhhhcccchHHHHHHHhH
Confidence            1122111   12222222   22333    33566777777666665543      23455554             466


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhh
Q 019002          237 HSLIEQLEVKQTQAEGLVSEIH  258 (347)
Q Consensus       237 hSLtEqL~~KQaQaE~L~tE~n  258 (347)
                      +.|=+||+.=|.-.-.|++|..
T Consensus       163 ~eLK~QL~Elq~~Fv~ltne~~  184 (617)
T PF15070_consen  163 RELKEQLAELQDAFVKLTNENM  184 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhh
Confidence            7778888887777777777653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	347
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	6e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.6 bits (138), Expect = 3e-09
 Identities = 76/399 (19%), Positives = 128/399 (32%), Gaps = 103/399 (25%)

Query: 1   MAG-----LLAWAADVVKAHKDDDDDEDAI------NSSIPLVFTEEQQKYVRELDQKAA 49
           + G     +   A DV  ++K     +  I      N + P    E  QK + ++D    
Sbjct: 158 VLGSGKTWV---ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214

Query: 50  SLSRLIRDLRLRLPPPDISQRLPHL-----HAHSL-----AYSAALSQQLSSHS----ST 95
           S S    +++LR+    I   L  L     + + L       +A      +       +T
Sbjct: 215 SRSDHSSNIKLRIH--SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT 272

Query: 96  REQ--------TQLREVTLQEENAAYEKAISSCESR-IQEKI--QEADSLRRKLKEMDEM 144
           R +             ++L   +          E + +  K        L R++   +  
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPD----EVKSLLLKYLDCRPQDLPREVLTTNPR 328

Query: 145 ENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALRSDIA--EKLEVKK--KELSS 200
             ++ +E  +   A          + +  DK    T  + S +   E  E +K    LS 
Sbjct: 329 RLSIIAESIRDGLATW-----DNWKHVNCDKL---TTIIESSLNVLEPAEYRKMFDRLSV 380

Query: 201 MEERV----QELEKKWAQVQNDALKQPSPAQREKMLNKQLH--SLIEQLEVKQTQAEGLV 254
                      L   W  V          +    ++NK LH  SL+E    KQ   E  +
Sbjct: 381 FPPSAHIPTILLSLIWFDV--------IKSDVMVVVNK-LHKYSLVE----KQ-PKESTI 426

Query: 255 S--EIHLKEK-ELETLNGLRRRIEGSNVEEDTARNRLRRVTSDRGSASTDYLVDDS---Q 308
           S   I+L+ K +LE    L R I    V+       + + T D       YL  D     
Sbjct: 427 SIPSIYLELKVKLENEYALHRSI----VDHY----NIPK-TFDSDDLIPPYL--DQYFYS 475

Query: 309 KLPYHTGGNETLYKLMLLRSSFVLYILALHIAVFI--KI 345
            + +H    E   ++ L R  F    L      F+  KI
Sbjct: 476 HIGHHLKNIEHPERMTLFRMVF----LDFR---FLEQKI 507

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 2e-06
 Identities = 60/362 (16%), Positives = 120/362 (33%), Gaps = 81/362 (22%)

Query: 10  DVVKAHKDDDDDEDAINSSIPLVFTEEQQKYVRELDQKAASLSRLIRDLRLRLPPPDISQ 69
               A  D+ D +D +      + ++E+  ++       +   RL   L  +    ++ Q
Sbjct: 24  VFEDAFVDNFDCKD-VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK--QEEMVQ 80

Query: 70  RLPHLHAHSLAYS---AALSQQLSSHS-STREQTQLREVTLQEENAAYEK-AISSCESRI 124
           +        + Y    + +  +    S  TR   + R+  L  +N  + K  +    SR+
Sbjct: 81  KFVE-EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR-LYNDNQVFAKYNV----SRL 134

Query: 125 QEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALR 184
           Q  ++    LR+ L E+     N+      +   +    SGK   + +A       D   
Sbjct: 135 QPYLK----LRQALLELRP-AKNVL-----ID-GV--LGSGK---TWVA------LDVCL 172

Query: 185 SDIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLE 244
           S          K    M+ ++      W  ++N      SP    +ML K L+ +     
Sbjct: 173 SY---------KVQCKMDFKIF-----WLNLKNCN----SPETVLEMLQKLLYQIDPNWT 214

Query: 245 VKQTQAEGLVSEIHLKEKELETLNGLRRRIEG----SNVEE-------D-------TARN 286
            +   +  +   IH  + EL  L   +          NV+        +       T R 
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF 274

Query: 287 RLRRVTSDRGSASTDYLVDDSQKLPYHTGGNETLYKLML------LRSSFVLYILALHIA 340
             ++VT    +A+T ++  D   +       ++L    L      L    VL      ++
Sbjct: 275 --KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE-VLTTNPRRLS 331

Query: 341 VF 342
           + 
Sbjct: 332 II 333

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 6e-06
 Identities = 58/387 (14%), Positives = 117/387 (30%), Gaps = 86/387 (22%)

Query: 7   WAADVVKAH-KDDDDDEDAINSSIPLVFTEEQ--QKY--VRELDQKAASLSRLIRDLRLR 61
           +    +K   +               ++ + Q   KY   R   Q    L + + +LR  
Sbjct: 93  FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL--QPYLKLRQALLELR-- 148

Query: 62  LPPPDISQRLPHLHA------HSLAYSAALSQQLSSHS-------STREQTQLREVTLQE 108
            P  ++      +          +A    LS ++           + +       V    
Sbjct: 149 -PAKNVL-----IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202

Query: 109 ENAAYEKAISSCE-----SRIQEKIQEA-DSLRRKLKEMDEMENNLASELDKVQTAMNTS 162
           +   Y+   +        S I+ +I      LRR LK     EN L   L  VQ A    
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP-YENCLLV-LLNVQNA-KAW 259

Query: 163 KSGKFTESILA---DKAGVDTDALRSDIAEKLEVKKKELSSMEERVQELEKKWAQVQNDA 219
            +   +  IL     K    TD L +     + +    ++   + V+ L  K+   +   
Sbjct: 260 NAFNLSCKILLTTRFKQ--VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317

Query: 220 LKQPSPAQREKMLNKQLHSLI-EQLEV--------KQTQAEGLVSEIHLKEKELETLN-- 268
           L    P +     N +  S+I E +          K    + L + I   E  L  L   
Sbjct: 318 L----PREVLT-TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII---ESSLNVLEPA 369

Query: 269 GLRRR-----I--EGSNVEEDTARNRLRRVTSDRGSASTDYLVDDSQKLPYHTGGNETLY 321
             R+      +    +++        L  +  D   +    +V+   K            
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTIL----LSLIWFDVIKSDVMVVVNKLHK------------ 413

Query: 322 KLMLLR--SSFVLYILALHIAVFIKIS 346
             ++ +      + I ++++ + +K+ 
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLE 440

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 53.7 bits (129), Expect = 6e-08
 Identities = 39/237 (16%), Positives = 90/237 (37%), Gaps = 21/237 (8%)

Query: 35   EEQQKYVRELDQKAASLSRLIRDLRLRLPPPDISQRLPHLHAHSLAYSAALSQQLSSHSS 94
             E ++    L  K   L  ++ ++  R+   +  +R   L A        + QQ+     
Sbjct: 909  AEAEEMRVRLAAKKQELEEILHEMEARIE--EEEERSQQLQAEK----KKMQQQMLDLEE 962

Query: 95   TREQTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDK 154
              E+ +     LQ E    +  I   E  I     + + L ++ K ++E  ++L + L +
Sbjct: 963  QLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAE 1022

Query: 155  VQTAMNTSKSGKFTESILADKAGVDTDALRSDIAEKLEVKKKELSSMEERVQELE--KKW 212
             +                  K     +++ S++  +L+ ++K    +E+  ++LE     
Sbjct: 1023 EEEKAKN-----------LTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSD 1071

Query: 213  AQVQNDALKQPSPAQREKMLNKQ--LHSLIEQLEVKQTQAEGLVSEIHLKEKELETL 267
               Q   L+      + ++  K+  L + + +LE + +Q    + +I   E  +  L
Sbjct: 1072 LHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDL 1128

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 51.0 bits (122), Expect = 3e-07
 Identities = 37/264 (14%), Positives = 90/264 (34%), Gaps = 19/264 (7%)

Query: 35   EEQQKYVRELDQKAASLSRLIRDLRLRLPPPDISQRLPHLHAHSLAYSAALSQQLSSHSS 94
            EE+++  ++L  +   + + + DL  +L      +                  ++     
Sbjct: 937  EEEEERSQQLQAEKKKMQQQMLDLEEQL------EEEEAARQKLQLEKVTADGKIKKMED 990

Query: 95   TREQTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELD- 153
                 + +   L +E    E+ +S   + + E+ ++A +L +   + + M + L   L  
Sbjct: 991  DILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKK 1050

Query: 154  --KVQTAMNTSKSGKFTESILADKAGVDTDALRSDIAEKLEVKKKELSSMEERVQELEKK 211
              K +  +   K     ES    +   +  A  +++  +L  K++EL +   R+++   +
Sbjct: 1051 EEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQ 1110

Query: 212  WAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLNGLR 271
                              + L   +  L E LE ++        +     +ELE L    
Sbjct: 1111 KNNALKKI----------RELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTEL 1160

Query: 272  RRIEGSNVEEDTARNRLRRVTSDR 295
                 +   +   R    +   D+
Sbjct: 1161 EDTLDTTATQQELRGSDYKDDDDK 1184

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 31/208 (14%), Positives = 67/208 (32%), Gaps = 34/208 (16%)

Query: 87   QQLSSHSSTREQTQLREVTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMEN 146
              L  H S   Q  +R    +       KAI   +   +  +      +R+LK++ ++E 
Sbjct: 860  MMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMA-----KRELKKL-KIEA 913

Query: 147  NLASELDKVQTAMNTSKSGKFTESILADKAGVDTDALRSDIAEKLEVKKKELSSMEERVQ 206
                   K+   +                     +     +  K++ + KE  S+ E++ 
Sbjct: 914  RSVERYKKLHIGL---------------------ENKIMQLQRKIDEQNKEYKSLLEKMN 952

Query: 207  ELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKEL-- 264
             LE  ++             +R +M  ++  +   ++   Q +   L  E+H  + E   
Sbjct: 953  NLEITYSTETEKLRSD---VERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKT 1009

Query: 265  --ETLNGLRRRIEGSNVEEDTARNRLRR 290
              E  +  +   E    E       L+ 
Sbjct: 1010 IEEWADKYKHETEQLVSELKEQNTLLKT 1037

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	347
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	96.25
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	95.99
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	92.33
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	91.86
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	91.52
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	91.48
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	90.76
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	88.65
2zqm_A	117	Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9	85.27
3vp9_A	92	General transcriptional corepressor TUP1; four hel	83.04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	82.3
1fxk_A	107	Prefoldin; archaeal protein, chaperone; 2.30A {Met	81.94

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=96.25  E-value=0.37  Score=39.24  Aligned_cols=12  Identities=8%  Similarity=-0.039  Sum_probs=4.4

Q ss_pred             hHHHHHHHHHHh
Q 019002           47 KAASLSRLIRDL   58 (347)
Q Consensus        47 kAasL~rsiqdL   58 (347)
                      +...|..-|..+
T Consensus        21 ~~~~l~~~l~~l   32 (284)
T 1c1g_A           21 RADEAEADKKAA   32 (284)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            333333333333

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=95.99  E-value=0.5  Score=38.46  Aligned_cols=21  Identities=24%  Similarity=0.265  Sum_probs=8.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 019002          192 EVKKKELSSMEERVQELEKKW  212 (347)
Q Consensus       192 e~kk~el~~~e~~v~~lek~w  212 (347)
                      ...+..+..++..+..++...
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~  197 (284)
T 1c1g_A          177 ERAEERAELSEGKCAELEEEI  197 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333333334444444443333

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=92.33  E-value=2.3  Score=45.94  Aligned_cols=30  Identities=27%  Similarity=0.359  Sum_probs=0.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 019002          110 NAAYEKAISSCESRIQEKIQEADSLRRKLK  139 (347)
Q Consensus       110 naayekAis~c~~~i~ek~~ea~~L~~~l~  139 (347)
                      |.-.|+-|...+.+++++-.+...|..+++
T Consensus       923 ~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~  952 (1080)
T 2dfs_A          923 HIGLENKIMQLQRKIDEQNKEYKSLLEKMN  952 (1080)
T ss_dssp             ----------------------------CH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444444433

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=91.86  E-value=13  Score=45.04  Aligned_cols=75  Identities=15%  Similarity=0.207  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHH-HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHH
Q 019002          189 EKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREK-MLNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETL  267 (347)
Q Consensus       189 ~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk-~LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErL  267 (347)
                      ++|++++.+|..+|++++.|..+++..           .+|| .|+.+.......|..-+.-+.+|.+|+.-=..+.+.+
T Consensus      2028 ~~L~~~~~~L~~le~~l~~L~~~~~~~-----------~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l 2096 (3245)
T 3vkg_A         2028 LKQDEIVATITALEKSIATYKEEYATL-----------IRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENF 2096 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHH
Confidence            355555555555555555555555442           2222 3666666666677777777777888877666666666


Q ss_pred             HHHHhhh
Q 019002          268 NGLRRRI  274 (347)
Q Consensus       268 n~l~Rn~  274 (347)
                      +..+.++
T Consensus      2097 ~~~~~~L 2103 (3245)
T 3vkg_A         2097 NTQMSTV 2103 (3245)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            6555554

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=91.52  E-value=7.3  Score=34.78  Aligned_cols=129  Identities=11%  Similarity=0.134  Sum_probs=77.0

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcchhhhhhhcccchhhh
Q 019002          104 VTLQEENAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTESILADKAGVDTDAL  183 (347)
Q Consensus       104 ~tlqeenaayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~s~~~~~a~~~~e~~  183 (347)
                      .+|..+....+..+...+..+.....++..+....+..+.--..+++..++.+..++...               +... 
T Consensus        28 ~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~---------------~~kE-   91 (256)
T 3na7_A           28 REKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK---------------SERE-   91 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS---------------SSSH-
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC---------------CHHH-
Confidence            345677777777777777777777777777777777777777777777777776664321               1111 


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCChHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 019002          184 RSDIAEKLEVKKKELSSMEERVQELEKKWAQVQNDALKQPSPAQREKMLNKQLHSLIEQLEVKQTQAEGLVSEIH  258 (347)
Q Consensus       184 ~s~il~~Le~kk~el~~~e~~v~~lek~w~~vq~~alk~PspaQREk~LEkrLhSLtEqL~~KQaQaE~L~tE~n  258 (347)
                      -.++..+++..+++++.+|+.+.++..+-...+..          -+.++.++..+-+.|..+++..+.-..|+.
T Consensus        92 ~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~----------l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~  156 (256)
T 3na7_A           92 LRSLNIEEDIAKERSNQANREIENLQNEIKRKSEK----------QEDLKKEMLELEKLALELESLVENEVKNIK  156 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            12344666666777777776666665554443322          223455555555555555555554444433

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=91.48  E-value=3.2  Score=49.83  Aligned_cols=53  Identities=11%  Similarity=0.150  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhc
Q 019002          110 NAAYEKAISSCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTS  162 (347)
Q Consensus       110 naayekAis~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~  162 (347)
                      ...|.+-...-++.+.+++.-..-=..||.|-...=..|+.+|...+..|...
T Consensus      1901 i~~y~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k 1953 (3245)
T 3vkg_A         1901 INQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVK 1953 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444333333333455555555566677777766666544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=90.76  E-value=0.94  Score=43.33  Aligned_cols=27  Identities=15%  Similarity=0.286  Sum_probs=16.3

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019002          104 VTLQEENAAYEKAISSCESRIQEKIQE  130 (347)
Q Consensus       104 ~tlqeenaayekAis~c~~~i~ek~~e  130 (347)
                      .+|+++...-++++...+.+|.++.+.
T Consensus       466 ~~l~~~~~~~~~~l~~~~~~i~~~~~~  492 (597)
T 3oja_B          466 QQLTNEQIQQEQLLQGLHAEIDTNLRR  492 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            345566666666666666666665544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=88.65  E-value=17  Score=34.67  Aligned_cols=37  Identities=27%  Similarity=0.386  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHH
Q 019002          232 LNKQLHSLIEQLEVKQTQAEGLVSEIHLKEKELETLN  268 (347)
Q Consensus       232 LEkrLhSLtEqL~~KQaQaE~L~tE~nalelqLErLn  268 (347)
                      ++++...|=.++-.++.+.+.+..|.+.+..++..|.
T Consensus       542 ~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~  578 (597)
T 3oja_B          542 LEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLE  578 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            4455556666666666667777777777766666664

>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A

Probab=85.27  E-value=11  Score=29.11  Aligned_cols=93  Identities=18%  Similarity=0.262  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcch--hhhhhhcccch--hhhhhhHHHHHHHHHHHH
Q 019002          123 RIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTE--SILADKAGVDT--DALRSDIAEKLEVKKKEL  198 (347)
Q Consensus       123 ~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~--s~~~~~a~~~~--e~~~s~il~~Le~kk~el  198 (347)
                      ..|+++.+...|+..++.+..--..+..++.+.....+.-.......  -...|......  +.....+-+..+...+++
T Consensus         7 e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i   86 (117)
T 2zqm_A            7 QVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRL   86 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence            34555555555555555555555555555544443333222221111  12233332222  222233334555555555


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 019002          199 SSMEERVQELEKKWAQV  215 (347)
Q Consensus       199 ~~~e~~v~~lek~w~~v  215 (347)
                      +.++.+...++++-..+
T Consensus        87 ~~le~~~~~l~~~l~~l  103 (117)
T 2zqm_A           87 NALERQEKKLNEKLKEL  103 (117)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            66666666666554443

>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A

Probab=83.04  E-value=7.2  Score=31.69  Aligned_cols=55  Identities=9%  Similarity=0.259  Sum_probs=44.3

Q ss_pred             hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhh
Q 019002          106 LQEENAAYEKAIS-SCESRIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMN  160 (347)
Q Consensus       106 lqeenaayekAis-~c~~~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~  160 (347)
                      +.-|...|..--. +|+-||.-.++|.+..+.++.+||.+-.++|..+|.-...|.
T Consensus        26 ~~~e~~~~k~q~~~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq~YEeEI~rLr   81 (92)
T 3vp9_A           26 VSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNTVYERELTHRKMKDAYEEEIKHLK   81 (92)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445556654443 899999999999999999999999999999998887665554

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=82.30  E-value=5.8  Score=42.85  Aligned_cols=37  Identities=19%  Similarity=0.210  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHHHH-----HhhhhhhhhhhhHHhhhHHH
Q 019002          232 LNKQLHSLIEQLEVKQT-----QAEGLVSEIHLKEKELETLN  268 (347)
Q Consensus       232 LEkrLhSLtEqL~~KQa-----QaE~L~tE~nalelqLErLn  268 (347)
                      |+.++..|......++.     .-..+..|+..++.++|.-.
T Consensus      1035 L~qq~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1076 (1080)
T 2dfs_A         1035 LKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDER 1076 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666533333322     22233455666666665544

>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B

Probab=81.94  E-value=15  Score=28.04  Aligned_cols=92  Identities=14%  Similarity=0.260  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHH---HHhhhccCCCcchhhhhhhcccch--hhhhhhHHHHHHHHHHHH
Q 019002          124 IQEKIQEADSLRRKLKEMDEMENNLASELDKVQ---TAMNTSKSGKFTESILADKAGVDT--DALRSDIAEKLEVKKKEL  198 (347)
Q Consensus       124 i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~---~~~~~~q~~~s~~s~~~~~a~~~~--e~~~s~il~~Le~kk~el  198 (347)
                      +|+++.+...|+..+..+..--..+..++.+..   .++..-.+..-. -...|......  +.....+-+..+....++
T Consensus         3 ~Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~v-y~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i   81 (107)
T 1fxk_A            3 VQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEV-YKSSGNILIRVAKDELTEELQEKLETLQLRE   81 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCE-EEEETTEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchH-HHHHhHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            344444555555555555444444444444433   333333221111 12333333222  222233344555555666


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q 019002          199 SSMEERVQELEKKWAQVQ  216 (347)
Q Consensus       199 ~~~e~~v~~lek~w~~vq  216 (347)
                      +.++.+...++++-..++
T Consensus        82 ~~le~~~~~~~~~l~~lk   99 (107)
T 1fxk_A           82 KTIERQEERVMKKLQEMQ   99 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            666666666666655443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	347
d1fxka_	107	Prefoldin beta subunit {Archaeon Methanobacterium	92.2

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=92.20  E-value=0.55  Score=35.34  Aligned_cols=96  Identities=15%  Similarity=0.248  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHhhhccCCCcch--hhhhhhcccc--hhhhhhhHHHHHHHHHHHH
Q 019002          123 RIQEKIQEADSLRRKLKEMDEMENNLASELDKVQTAMNTSKSGKFTE--SILADKAGVD--TDALRSDIAEKLEVKKKEL  198 (347)
Q Consensus       123 ~i~ek~~ea~~L~~~l~eme~~E~~l~~ele~~~~~~~~~q~~~s~~--s~~~~~a~~~--~e~~~s~il~~Le~kk~el  198 (347)
                      ++++++.+...|+..++.+..--..|..++...+..++.-....+..  =...|.....  -+.....+-+.++....++
T Consensus         2 ~lqe~~~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~~l~~d~~vyk~vG~vLv~~~~~e~~~~l~~~~e~l~~~i   81 (107)
T d1fxka_           2 NVQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLRE   81 (107)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHH
Confidence            35667777777777777777777777776666655555433333222  1233333332  3334556667888888888


Q ss_pred             HHHHHHHHHHHHHHHHHhHh
Q 019002          199 SSMEERVQELEKKWAQVQND  218 (347)
Q Consensus       199 ~~~e~~v~~lek~w~~vq~~  218 (347)
                      +.++..+..++++..-++.+
T Consensus        82 ~~l~~q~~~l~~~l~~~~~~  101 (107)
T d1fxka_          82 KTIERQEERVMKKLQEMQVN  101 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            88888888888887766554