Citrus Sinensis ID: 019035

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------
Protein Sequence
MQNLAPHKPVISRTKLPLLLAVDSLPSRASLLRRIPISPSLRCRELSRLNLSHGKFIVQASNIGVGSGGHEGSNESENQKISGNSSEIQKAPSRILYPVSIALVLLGCGLVFSLIAFVKGGPTLVLAAIAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYEKVLVLLGSMAALALMTVLSVVIGIIFHSVPSQFQTTLPIGEYAAVTLLMFFGLKSIKDAWDLPSKEVKSGDKNGRELDELAEAEELVKEKLSKRLSNPLEIIWKSFSLVFFAEWGDRSMLATIALGAAQSPWGVASGAIAGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFFGVF
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccEEEEEcccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccEEcccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccEEEccccccHHHccccccHHHHHcccccccccEEcEcHccccccccEEEEEEcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mqnlaphkpvisrtklplllavdslpsrasllrripispslrcrELSRLNLSHgkfivqasnigvgsgghegsnesenqkisgnsseiqkapsrilyPVSIALVLLGCGLVFSLIAFVKGGPTLVLAAIAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYEKVLVLLGSMAALALMTVLSVVIGIIFhsvpsqfqttlpiGEYAAVTLLMFFGLKSikdawdlpskevksgdkngrELDELAEAEELVKEKLSKRLSNPLEIIWKSFSLVFFAEWGDRSMLATIALGaaqspwgvaSGAIAGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFFGVF
Flexible Loop (DISEMBL)
mqnlaphkpvisrtklplLLAVDslpsrasllrripispslrcRELSRLNLSHGKFIVQASNIGVGSGGHEGSNESENQKISGNSSEIQKAPSRILYPVSIALVLLGCGLVFSLIAFVKGGPTLVLAAIAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYEKVLVLLGSMAALALMTVLSVVIGIIFHSVPSQFQTTLPIGEYAAVTLLMFFGLKSIkdawdlpskevksgdkngreLDELAEAEELVKEklskrlsnpleiIWKSFSLVFFAEWGDRSMLATIALGAAQSPWGVASGAIAGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFFGVF
Low Complexity Region (SEG)
MQNLAPHKPVISRTKLPLLLAVDSLPSRASLLRRIPISPSLRCRELSRLNLSHGKFIVQAsnigvgsgghegsnesenQKISGNSSEIQKAPSRILYPVSIALVLLGCGLVFSLIAFVKGGPTLVLAAIAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYEKVLVLLGSMAALALMTVLSVVIGIIFHSVPSQFQTTLPIGEYAAVTLLMFFGLKSIKDAWDLPSKEVKSGDKNGReldelaeaeelvkeklSKRLSNPLEIIWKSFSLVFFAEWGDRSMLATIALGAAQSPWGVASGAIAGHLLATSFAVLGGAFLANYISEKLVGYIGgvlflvfavatffgvf
Disordered region (IsUnstruct)
*************TKLPLLLAVDSLPSRASLLRRIPISPSLRCRELSRLNLSHGKFIVQASNIG*****************************RILYPVSIALVLLGCGLVFSLIAFVKGGPTLVLAAIAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYEKVLVLLGSMAALALMTVLSVVIGIIFHSVPSQFQTTLPIGEYAAVTLLMFFGLKSIKDAWDL*********************************SNPLEIIWKSFSLVFFAEWGDRSMLATIALGAAQSPWGVASGAIAGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFFGV*
Disordered Region (DISOPRED)
***************LPLL*************************************************************************************************************IAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYEKVLVLLGSMAALALMTVLSVVIGIIFHSVPSQFQTTLPIGEYAAVTLLMFFGLKSIKDAWDLPS*****************************RLSNPLEIIWKSFSLVFFAEWGDRSMLATIALGAAQSPWGVASGAIAGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFFGVF
Disordered Region (DISEMBL)
MQNLAPHKPVISRTKLPLLLAVDSLPSRASLLRRIPISPSLRCRELSRLNLSHGKFIVQASNIGVG***********************KAPSRILYPVSIALVLLGCGLVFSLIAFVKGGPTLVLAAIAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYEKVLVLLGSMAALALMTVLSVVIGIIFHSVPSQFQTTLPIGEYAAVTLLMFFGLKSIKDAWDLPSKEVKSGDKNGRELDELAEAEELVKEKLSKRLSNPLEIIWKSFSLVFFAEWGDRSMLATIALGAAQSPWGVASGAIAGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFFGVF
Disordered Region (DISPRO)
*****PHKPVISRTKLPLLLAVDSLPSRASLLRRIPISPSLRCRELSRLNLSHGKFIVQASNIGVG*************************PSRILYPVSIALVLLGCGLVFSLIAFVKGGPTLVLAAIAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYEKVLVLLGSMAALALMTVLSVVIGIIFHSVPSQFQTTLPIGEYAAVTLLMFFGLKSIKDAWDLP*****************************KRLSNPLEIIWKSFSLVFFAEWGDRSMLATIALGAAQSPWGVASGAIAGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFFGVF
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQNLAPHKPVISRTKLPLLLAVDSLPSRASLLRRIPISPSLRCRELSRLNLSHGKFIVQASNIGVGSGGHEGSNESENQKISGNSSEIQKAPSRILYPVSIALVLLGCGLVFSLIAFVKGGPTLVLAAIAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYEKVLVLLGSMAALALMTVLSVVIGIIFHSVPSQFQTTLPIGEYAAVTLLMFFGLKSIKDAWDLPSKEVKSGDKNGRELDELAEAEELVKEKLSKRLSNPLEIIWKSFSLVFFAEWGDRSMLATIALGAAQSPWGVASGAIAGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFFGVF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	347	2.2.26 [Sep-21-2011]
Q9T0H9	359	GDT1-like protein 2, chlo	yes	no	0.968	0.935	0.702	1e-125
Q2R2Z4	347	GDT1-like protein 2, chlo	yes	no	0.904	0.904	0.659	1e-106
Q94AX5	370	GDT1-like protein 1, chlo	no	no	0.576	0.540	0.493	4e-39
Q5NAY7	341	GDT1-like protein 1, chlo	no	no	0.573	0.583	0.452	1e-38
B8AAM2	341	GDT1-like protein 1, chlo	N/A	no	0.573	0.583	0.452	1e-38
P52876	206	GDT1-like protein sll0615	N/A	no	0.570	0.961	0.441	1e-38
Q6ZIB9	282	GDT1-like protein 4 OS=Or	no	no	0.587	0.723	0.431	2e-34
A2YXC7	281	GDT1-like protein 4 OS=Or	N/A	no	0.587	0.725	0.431	2e-34
Q9HC07	324	Transmembrane protein 165	yes	no	0.573	0.614	0.381	1e-33
Q93Y38	293	GDT1-like protein 3 OS=Ar	no	no	0.619	0.733	0.434	3e-33

>sp|Q9T0H9|GDT12_ARATH GDT1-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=At4g13590 PE=1 SV=2

 Score =  447 bits (1151), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 241/343 (70%), Positives = 268/343 (78%), Gaps = 7/343 (2%)

Query: 10  VISRTKLPLLLAVDSLPSRASLLRRIPISPSLRCRELSRLNLSHGKFIVQASN-----IG 64
           V S  KLP L   ++LP   S   R P    LRCR   +L+L  GKF V+AS+       
Sbjct: 19  VSSIQKLPFLSLSETLPCPKS--SRKPTFLPLRCRRRPKLDLLWGKFRVRASDAGVGSGS 76

Query: 65  VGSGGHEGSNESENQKISGNSSEIQKAPSRILYPVSIALVLLGCGLVFSLIAFVKGGPTL 124
              G  +GS  S   +    SSE  K      Y +SIALVLL CGLVFSLI FVKGGP+ 
Sbjct: 77  YSGGEEDGSQSSSLDQSPATSSESLKPRGPFPYSLSIALVLLSCGLVFSLITFVKGGPSS 136

Query: 125 VLAAIAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYEKVLVLLGSMAALALMTVLSVVI 184
           VLAA+AKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYEK LVLLGSM AL+LMT+LSVVI
Sbjct: 137 VLAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYEKTLVLLGSMGALSLMTILSVVI 196

Query: 185 GIIFHSVPSQFQTTLPIGEYAAVTLLMFFGLKSIKDAWDLPSKEVKSGDKNGRELDELAE 244
           G IF SVP+QFQTTLPIGEYAA+ LLMFFGLKSIKDAWDLP  E K+G++ G EL E +E
Sbjct: 197 GKIFQSVPAQFQTTLPIGEYAAIALLMFFGLKSIKDAWDLPPVEAKNGEETGIELGEYSE 256

Query: 245 AEELVKEKLSKRLSNPLEIIWKSFSLVFFAEWGDRSMLATIALGAAQSPWGVASGAIAGH 304
           AEELVKEK SK+L+NPLEI+WKSFSLVFFAEWGDRSMLAT+ALGAAQSP GVASGAIAGH
Sbjct: 257 AEELVKEKASKKLTNPLEILWKSFSLVFFAEWGDRSMLATVALGAAQSPLGVASGAIAGH 316

Query: 305 LLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFFGVF 347
           L+AT  A++GGAFLANYISEKLVGY+GG LFLVFA ATFFGVF
Sbjct: 317 LVATVLAIMGGAFLANYISEKLVGYVGGALFLVFAAATFFGVF 359

Arabidopsis thaliana (taxid: 3702)

>sp|Q2R2Z4|GDT12_ORYSJ GDT1-like protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os11g0544500 PE=2 SV=1

 Score =  384 bits (986), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 213/323 (65%), Positives = 251/323 (77%), Gaps = 9/323 (2%)

Query: 31  LLRRIPISPSLRCRELSRLNLSHGKFIVQASNIGVGSGGHEGSN-----ESENQKISGNS 85
           L RR  +   +RCR L  L        VQ SN+ VG+G +EG       E  +   + +S
Sbjct: 28  LRRRCLVEGQVRCR-LPWLRPIRHNVRVQTSNVNVGAGSYEGGEAGSHGEHLDSSATRDS 86

Query: 86  SEIQKAPSRILYPVSIALVLLGCGLVFSLIAFVKGGPTLVLAAIAKSGFTAAFSLIFVSE 145
           ++  K PS   YP SIA VLL C L  + I F KG P+ V+A +AKSGFTAAF+LIFVSE
Sbjct: 87  NKPTKPPSGSRYPQSIAAVLLLCALASAFIVFFKGQPSAVVAMLAKSGFTAAFTLIFVSE 146

Query: 146 IGDKTFFIAALLAMQYEKVLVLLGSMAALALMTVLSVVIGIIFHSVPSQFQTTLPIGEYA 205
           IGDKTFFIAALLAMQY++ LVLLGSMAAL+LMT++SV+IG IF SVP+QFQTTLPIGEYA
Sbjct: 147 IGDKTFFIAALLAMQYQRALVLLGSMAALSLMTIVSVIIGRIFQSVPAQFQTTLPIGEYA 206

Query: 206 AVTLLMFFGLKSIKDAWDLPSKEVKSGDKNGR-ELDELAEAEELVKEKLSKRLSNPLEII 264
           A+ LL FFG KSIKDAW LP     +G+  G  E  ELAEAEELVKEK++K+L++PLE++
Sbjct: 207 AIALLAFFGFKSIKDAWQLPDN--ANGNLQGNSESGELAEAEELVKEKVAKKLTSPLEVL 264

Query: 265 WKSFSLVFFAEWGDRSMLATIALGAAQSPWGVASGAIAGHLLATSFAVLGGAFLANYISE 324
           WKSFSLVFFAEWGDRSMLATIALGAAQSP+GVASGAIAGHL+AT  A++GGAFLANY+SE
Sbjct: 265 WKSFSLVFFAEWGDRSMLATIALGAAQSPFGVASGAIAGHLVATFLAIVGGAFLANYLSE 324

Query: 325 KLVGYIGGVLFLVFAVATFFGVF 347
           KLVG IGGVLFL+FAVATFFGVF
Sbjct: 325 KLVGLIGGVLFLLFAVATFFGVF 347

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q94AX5|GDT11_ARATH GDT1-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=At1g64150 PE=2 SV=2

 Score =  162 bits (409), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 108/219 (49%), Positives = 139/219 (63%), Gaps = 19/219 (8%)

Query: 132 SGFTAAFSLIFVSEIGDKTFFIAALLAMQYEKVLVLLGSMAALALMTVLSVVIGIIFHSV 191
           SGF +AF LIF SE+GDKTFFIAALLA +     V +G+  AL +MT++SVV+G  FH V
Sbjct: 157 SGFASAFLLIFFSELGDKTFFIAALLAARNSAATVFVGTFGALGIMTIISVVLGRTFHYV 216

Query: 192 ----PSQFQ-TTLPIGEYAAVTLLMFFGLKSIKDAWDLPSKEVKSGDKNGRELDELAEAE 246
               P +F  T LPI + AAV LL++FG+ ++ DA    S E K+        DE  +  
Sbjct: 217 DEVLPFRFGGTDLPIDDIAAVCLLVYFGVSTLLDAV---SDEGKA--------DEEQKEA 265

Query: 247 ELVKEKLSKR---LSNPLEIIWKSFSLVFFAEWGDRSMLATIALGAAQSPWGVASGAIAG 303
           EL   +LS     +      I  +F+LVF AEWGD+S  +TIAL AA SP GV +GA+AG
Sbjct: 266 ELAVSELSGNGAGIVAAANTIISTFALVFVAEWGDKSFFSTIALAAASSPLGVIAGALAG 325

Query: 304 HLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVAT 342
           H  AT  AVLGG+ L N++SEK + Y+GGVLFLVFA  T
Sbjct: 326 HGAATLLAVLGGSLLGNFLSEKAIAYVGGVLFLVFAAVT 364

Arabidopsis thaliana (taxid: 3702)

>sp|Q5NAY7|GDT11_ORYSJ GDT1-like protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0221700 PE=3 SV=2

 Score =  160 bits (405), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 101/223 (45%), Positives = 139/223 (62%), Gaps = 24/223 (10%)

Query: 131 KSGFTAAFSLIFVSEIGDKTFFIAALLAMQYEKVLVLLGSMAALALMTVLSVVIGIIFHS 190
            +GF +AF LIF SE+GD+TFFIAALLA +    ++ LG+  ALA+MT++SVV+G  FH 
Sbjct: 125 STGFASAFLLIFFSELGDRTFFIAALLAARNSGAIIFLGTFGALAVMTIISVVLGRAFHY 184

Query: 191 V----PSQFQ-TTLPIGEYAAVTLLMFFGLKSIKDAWDLPSKEVKSGDKNGRELDELAEA 245
           V    P  F  T  P+ ++ A  LL+++G+ ++ DA         SGD+      ++ E 
Sbjct: 185 VDGIIPFSFGGTDFPVDDFLAACLLVYYGITTLLDA--------ASGDEE-----KMNEE 231

Query: 246 EELVKEKLSKRLSNPLEII------WKSFSLVFFAEWGDRSMLATIALGAAQSPWGVASG 299
           +E  +  +SK L N   II        +F LVF AEWGD+S  +TIAL AA SP GV +G
Sbjct: 232 QEEAELAVSKFLGNGAGIISAASTIASTFVLVFIAEWGDKSFFSTIALAAASSPLGVIAG 291

Query: 300 AIAGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVAT 342
           ++AGH +AT  AVLGG+ L  ++SEK+V YIGG LFL FA  T
Sbjct: 292 SLAGHAVATLIAVLGGSLLGTFLSEKIVAYIGGSLFLAFAAVT 334

Oryza sativa subsp. japonica (taxid: 39947)

>sp|B8AAM2|GDT11_ORYSI GDT1-like protein 1, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_00941 PE=3 SV=2

 Score =  160 bits (405), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 101/223 (45%), Positives = 139/223 (62%), Gaps = 24/223 (10%)

Query: 131 KSGFTAAFSLIFVSEIGDKTFFIAALLAMQYEKVLVLLGSMAALALMTVLSVVIGIIFHS 190
            +GF +AF LIF SE+GD+TFFIAALLA +    ++ LG+  ALA+MT++SVV+G  FH 
Sbjct: 125 STGFASAFLLIFFSELGDRTFFIAALLAARNSGAIIFLGTFGALAVMTIISVVLGRAFHY 184

Query: 191 V----PSQFQ-TTLPIGEYAAVTLLMFFGLKSIKDAWDLPSKEVKSGDKNGRELDELAEA 245
           V    P  F  T  P+ ++ A  LL+++G+ ++ DA         SGD+      ++ E 
Sbjct: 185 VDGIIPFSFGGTDFPVDDFLAACLLVYYGVTTLLDA--------ASGDEE-----KMNEE 231

Query: 246 EELVKEKLSKRLSNPLEII------WKSFSLVFFAEWGDRSMLATIALGAAQSPWGVASG 299
           +E  +  +SK L N   II        +F LVF AEWGD+S  +TIAL AA SP GV +G
Sbjct: 232 QEEAELAVSKFLGNGAGIISAASTIASTFVLVFIAEWGDKSFFSTIALAAASSPLGVIAG 291

Query: 300 AIAGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVAT 342
           ++AGH +AT  AVLGG+ L  ++SEK+V YIGG LFL FA  T
Sbjct: 292 SLAGHAVATLIAVLGGSLLGTFLSEKIVAYIGGSLFLAFAAVT 334

Oryza sativa subsp. indica (taxid: 39946)

>sp|P52876|Y615_SYNY3 GDT1-like protein sll0615 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0615 PE=3 SV=1

 Score =  160 bits (405), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 95/215 (44%), Positives = 137/215 (63%), Gaps = 17/215 (7%)

Query: 132 SGFTAAFSLIFVSEIGDKTFFIAALLAMQYEKVLVLLGSMAALALMTVLSVVIGIIFHSV 191
           + FTA   LI VSE+GDKTFFIA +LAM+Y +  VL+G +  LA MT+LSV++G IF  +
Sbjct: 3   TAFTAGLLLITVSELGDKTFFIAMILAMRYPRRWVLVGVVGGLAAMTILSVLMGQIFTFL 62

Query: 192 PSQFQTTLPIGEYAAVTLLMFFGLKSIKDAWDLPSKEVKSGDKNGRELDELAEAEELVK- 250
           P+++        YA V L + FG K + DA     + +K+       L+E+ +AE+ +  
Sbjct: 63  PTRYI------NYAEVALFLIFGTKLLWDA-----RRIKATAN----LEEMEDAEKAIAS 107

Query: 251 -EKLSKRLSNPLEIIWKSFSLVFFAEWGDRSMLATIALGAAQSPWGVASGAIAGHLLATS 309
            EK  K +     I+ +SF+L F AEWGDR+ +ATIAL A+ + WGV++GAI GH +   
Sbjct: 108 GEKKLKIVPRGWGIVVESFALTFVAEWGDRTQIATIALAASNNAWGVSAGAILGHTICAV 167

Query: 310 FAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFF 344
            AV+GG F+A  ISEK V  IGG+LF +FAV +++
Sbjct: 168 IAVMGGKFVAGRISEKTVTLIGGLLFYLFAVVSWW 202

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|Q6ZIB9|GDT14_ORYSJ GDT1-like protein 4 OS=Oryza sativa subsp. japonica GN=Os08g0528500 PE=2 SV=1

 Score =  146 bits (369), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/211 (43%), Positives = 128/211 (60%), Gaps = 7/211 (3%)

Query: 134 FTAAFSLIFVSEIGDKTFFIAALLAMQYEKVLVLLGSMAALALMTVLSVVIGIIFHSVPS 193
           F A+ S+I VSEIGD+TF IAAL+AM++ K  VL G+++AL +MT+LS  +G I  ++ S
Sbjct: 75  FFASLSMILVSEIGDETFIIAALMAMRHPKSTVLSGALSALVVMTILSTGLGRIVPNLIS 134

Query: 194 QFQTTLPIGEYAAVTLLMFFGLKSIKDAWDLPSKEVKSGDKNGRELDELAEAEELVKEKL 253
           +  T       AA  L  FFGL+ +  AW   SK  +  +    E    A   +    ++
Sbjct: 135 RKHT-----NSAATVLYAFFGLRLLYIAWRSDSKASQKKEIEEVEEKLEAGQGKSTFRRI 189

Query: 254 SKRLSNPLEIIWKSFSLVFFAEWGDRSMLATIALGAAQSPWGVASGAIAGHLLATSFAVL 313
             R   P  I  +SF L F AEWGDRS +ATIAL   ++  GVA GA  GH + TSFAV+
Sbjct: 190 FSRFCTP--IFLESFVLTFLAEWGDRSQIATIALATHKNAVGVAVGATLGHTICTSFAVV 247

Query: 314 GGAFLANYISEKLVGYIGGVLFLVFAVATFF 344
           GG+ LA+ IS+  V  IGG+LFL F+++++F
Sbjct: 248 GGSMLASKISQGTVATIGGLLFLGFSLSSYF 278

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2YXC7|GDT14_ORYSI GDT1-like protein 4 OS=Oryza sativa subsp. indica GN=OsI_29993 PE=3 SV=1

 Score =  146 bits (369), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/211 (43%), Positives = 128/211 (60%), Gaps = 7/211 (3%)

Query: 134 FTAAFSLIFVSEIGDKTFFIAALLAMQYEKVLVLLGSMAALALMTVLSVVIGIIFHSVPS 193
           F A+ S+I VSEIGD+TF IAAL+AM++ K  VL G+++AL +MT+LS  +G I  ++ S
Sbjct: 74  FFASLSMILVSEIGDETFIIAALMAMRHPKSTVLSGALSALVVMTILSTGLGRIVPNLIS 133

Query: 194 QFQTTLPIGEYAAVTLLMFFGLKSIKDAWDLPSKEVKSGDKNGRELDELAEAEELVKEKL 253
           +  T       AA  L  FFGL+ +  AW   SK  +  +    E    A   +    ++
Sbjct: 134 RKHT-----NSAATVLYAFFGLRLLYIAWRSDSKASQKKEIEEVEEKLEAGQGKSTFRRI 188

Query: 254 SKRLSNPLEIIWKSFSLVFFAEWGDRSMLATIALGAAQSPWGVASGAIAGHLLATSFAVL 313
             R   P  I  +SF L F AEWGDRS +ATIAL   ++  GVA GA  GH + TSFAV+
Sbjct: 189 FSRFCTP--IFLESFVLTFLAEWGDRSQIATIALATHKNAVGVAVGATLGHTICTSFAVV 246

Query: 314 GGAFLANYISEKLVGYIGGVLFLVFAVATFF 344
           GG+ LA+ IS+  V  IGG+LFL F+++++F
Sbjct: 247 GGSMLASKISQGTVATIGGLLFLGFSLSSYF 277

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q9HC07|TM165_HUMAN Transmembrane protein 165 OS=Homo sapiens GN=TMEM165 PE=1 SV=1

 Score =  144 bits (362), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 89/233 (38%), Positives = 129/233 (55%), Gaps = 34/233 (14%)

Query: 134 FTAAFSLIFVSEIGDKTFFIAALLAMQYEKVLVLLGSMAALALMTVLSVVIGIIFHSVPS 193
           F AA S+I VSE+GDKTFFIAA++AM+Y ++ VL G+M AL LMT LSV+ G     +P 
Sbjct: 97  FVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALGLMTCLSVLFGYATTVIPR 156

Query: 194 QFQTTLPIGEYAAVTLLMFFGLKSIKDAWDLPSKEVKSGDKNGRELDEL-AEAEELVKE- 251
            +        Y +  L   FG++ +++   +      S D+   EL+E+ AE ++  +E 
Sbjct: 157 VYTY------YVSTVLFAIFGIRMLREGLKM------SPDEGQEELEEVQAELKKKDEEF 204

Query: 252 KLSKRLSNPLEI-----------IW---------KSFSLVFFAEWGDRSMLATIALGAAQ 291
           + +K L+ P ++            W         ++ +L F AEWGDRS L TI L A +
Sbjct: 205 QRTKLLNGPGDVETGTSITVPQKKWLHFISPIFVQALTLTFLAEWGDRSQLTTIVLAARE 264

Query: 292 SPWGVASGAIAGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFF 344
            P+GVA G   GH L T  AV+GG  +A  IS + V  IGG++FL FA +  F
Sbjct: 265 DPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTVTIIGGIVFLAFAFSALF 317

Homo sapiens (taxid: 9606)

>sp|Q93Y38|GDT13_ARATH GDT1-like protein 3 OS=Arabidopsis thaliana GN=At5g36290 PE=2 SV=1

 Score =  142 bits (359), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 100/230 (43%), Positives = 136/230 (59%), Gaps = 15/230 (6%)

Query: 121 GPTLVLAAIAKSGFTA---AFSLIFVSEIGDKTFFIAALLAMQYEKVLVLLGSMAALALM 177
           G  L L A A S F A   +FS+I V+EIGD+TF IAAL+AM++ K  VL G+++AL +M
Sbjct: 69  GLNLDLDATAPSVFDALFSSFSMILVTEIGDETFIIAALMAMRHPKATVLSGALSALFVM 128

Query: 178 TVLSVVIGIIFHSVPSQFQTTLPIGEYAAVTLLMFFGLKSIKDAWDLPSKEVKSGDKNGR 237
           T+LS  +G I  ++ S+  T       AA  L  FFGL+ +  AW   S + KS  K   
Sbjct: 129 TILSTGLGRIVPNLISRKHT-----NSAATVLYAFFGLRLLYIAWR--STDSKSNQKKEM 181

Query: 238 ELDELAEAEELVK---EKLSKRLSNPLEIIWKSFSLVFFAEWGDRSMLATIALGAAQSPW 294
           E  E        K    +L  R   P  I  +SF L F AEWGDRS +ATIAL   ++  
Sbjct: 182 EEVEEKLESGQGKTPFRRLFSRFCTP--IFLESFILTFLAEWGDRSQIATIALATHKNAI 239

Query: 295 GVASGAIAGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFF 344
           GVA GA  GH + TS AV+GG+ LA+ IS++ V  +GG+LFL F+V+++F
Sbjct: 240 GVAIGASIGHTVCTSLAVVGGSMLASRISQRTVATVGGLLFLGFSVSSYF 289

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	347
225433391	354	PREDICTED: GDT1-like protein 2, chloropl	0.971	0.951	0.784	1e-147
255554248	351	Transmembrane protein TPARL, putative [R	0.991	0.980	0.754	1e-136
224053467	315	predicted membrane protein [Populus tric	0.884	0.974	0.792	1e-135
356534846	354	PREDICTED: GDT1-like protein 2, chloropl	0.997	0.977	0.749	1e-132
449432464	355	PREDICTED: LOW QUALITY PROTEIN: GDT1-lik	0.997	0.974	0.693	1e-130
449487508	370	PREDICTED: GDT1-like protein 2, chloropl	0.985	0.924	0.688	1e-129
42566759	359	uncharacterized protein [Arabidopsis tha	0.968	0.935	0.702	1e-123
297800930	359	hypothetical protein ARALYDRAFT_915557 [	0.968	0.935	0.699	1e-122
334186495	359	uncharacterized protein [Arabidopsis tha	0.968	0.935	0.696	1e-122
115485819	347	Os11g0544500 [Oryza sativa Japonica Grou	0.904	0.904	0.659	1e-104

>gi|225433391|ref|XP_002285620.1| PREDICTED: GDT1-like protein 2, chloroplastic [Vitis vinifera] gi|297741903|emb|CBI33338.3| unnamed protein product [Vitis vinifera]

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 270/344 (78%), Positives = 296/344 (86%), Gaps = 7/344 (2%)

Query: 10  VISRTKLPLLLAVDSLPSRASLLRRIPISPSLRCRELSRLNLSHGKFIVQASNIGVGSGG 69
           ++SR KLPLL  VDS P  A L RR  I  SLRCR++SRL    G    QASN+G+GSGG
Sbjct: 12  IVSRRKLPLLALVDSFPCCAILSRRT-IPSSLRCRDVSRLKSVCGTIRAQASNVGIGSGG 70

Query: 70  HEGSNESENQKI------SGNSSEIQKAPSRILYPVSIALVLLGCGLVFSLIAFVKGGPT 123
           +EG  E++NQKI      S +SS I+K P RI YP+SIA+VL GC LVFSLI F KGGP+
Sbjct: 71  YEGKGENDNQKIFVNGPPSDSSSNIEKPPDRIPYPLSIAIVLFGCALVFSLIIFTKGGPS 130

Query: 124 LVLAAIAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYEKVLVLLGSMAALALMTVLSVV 183
            +LAAIAKSGFTAAF+LIFVSEIGDKTFFIAALLAMQYEKVLVLLGSM AL+LMT+LSVV
Sbjct: 131 SLLAAIAKSGFTAAFTLIFVSEIGDKTFFIAALLAMQYEKVLVLLGSMGALSLMTILSVV 190

Query: 184 IGIIFHSVPSQFQTTLPIGEYAAVTLLMFFGLKSIKDAWDLPSKEVKSGDKNGRELDELA 243
           IG IFHSVP+QFQTTLPIGEYAAVTLLMFFGLKSIKDAWDLPS  VKSGDK+G ELDE  
Sbjct: 191 IGRIFHSVPAQFQTTLPIGEYAAVTLLMFFGLKSIKDAWDLPSIVVKSGDKSGPELDEFV 250

Query: 244 EAEELVKEKLSKRLSNPLEIIWKSFSLVFFAEWGDRSMLATIALGAAQSPWGVASGAIAG 303
           EAEELVKEK+SKRL+NPLEI+WKSFSLVFFAEWGDRSMLATIALGAAQSPWGVASGAIAG
Sbjct: 251 EAEELVKEKVSKRLTNPLEIVWKSFSLVFFAEWGDRSMLATIALGAAQSPWGVASGAIAG 310

Query: 304 HLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFFGVF 347
           HL AT+ A+LGGAFLANYISEKLVGY+GG LFLVFAVATFFGVF
Sbjct: 311 HLFATTIAILGGAFLANYISEKLVGYLGGALFLVFAVATFFGVF 354

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554248|ref|XP_002518164.1| Transmembrane protein TPARL, putative [Ricinus communis] gi|223542760|gb|EEF44297.1| Transmembrane protein TPARL, putative [Ricinus communis]

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 267/354 (75%), Positives = 298/354 (84%), Gaps = 10/354 (2%)

Query: 1   MQNLAPHK-PVISRTKLPLLLAVDSLPSRASLLRRIPISPSLRCRELSRLNLSHGKFIVQ 59
           MQ L+  + P ISR K PLL  VDSLP  A +  R PIS SLR RE  RL         Q
Sbjct: 1   MQGLSLQRTPFISRGKPPLLALVDSLPCLAPISTR-PISTSLRYRE--RLISDFSILRPQ 57

Query: 60  ASNIGVGSGGHEGSNESENQK------ISGNSSEIQKAPSRILYPVSIALVLLGCGLVFS 113
           ASN+ +GSGG+EG  E +NQK       S NSSEI + PS+I YP+SIA+VLLGC  +FS
Sbjct: 58  ASNVSIGSGGYEGGEEKDNQKNLVNGPPSDNSSEIVEPPSKIPYPLSIAVVLLGCAFIFS 117

Query: 114 LIAFVKGGPTLVLAAIAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYEKVLVLLGSMAA 173
           LIAFVKGGP+ +LAAI+KSG TAAF+LIFVSEIGDKTFFIAALLAMQY+K LVLLGSM A
Sbjct: 118 LIAFVKGGPSSILAAISKSGLTAAFTLIFVSEIGDKTFFIAALLAMQYKKGLVLLGSMGA 177

Query: 174 LALMTVLSVVIGIIFHSVPSQFQTTLPIGEYAAVTLLMFFGLKSIKDAWDLPSKEVKSGD 233
           L+LMT+LSV+IG IFHSVP+QFQTTLPIGEYAAVTLLMFFGLKSIKDAWDLPS EV++GD
Sbjct: 178 LSLMTILSVIIGRIFHSVPAQFQTTLPIGEYAAVTLLMFFGLKSIKDAWDLPSDEVRNGD 237

Query: 234 KNGRELDELAEAEELVKEKLSKRLSNPLEIIWKSFSLVFFAEWGDRSMLATIALGAAQSP 293
           KN  ELDE AEAEELVKEK+SK+L+NP EIIWKSFSLVFFAEWGDRSMLATIALGAAQSP
Sbjct: 238 KNSPELDEYAEAEELVKEKVSKKLTNPFEIIWKSFSLVFFAEWGDRSMLATIALGAAQSP 297

Query: 294 WGVASGAIAGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFFGVF 347
           WGVA+GAIAGHL+ATS A+LGGAFLANYISEKLVGY+GGVLFLVFA+ATFFGVF
Sbjct: 298 WGVATGAIAGHLIATSIAILGGAFLANYISEKLVGYLGGVLFLVFAIATFFGVF 351

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053467|ref|XP_002297830.1| predicted membrane protein [Populus trichocarpa] gi|222845088|gb|EEE82635.1| predicted membrane protein [Populus trichocarpa]

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 248/313 (79%), Positives = 279/313 (89%), Gaps = 6/313 (1%)

Query: 41  LRCRELSRLNLSHGKFIVQASNIGVGSGGHEGSNESENQK--ISG----NSSEIQKAPSR 94
           +R RE+S+LN   G F  QASN+G+GSGG+EG  E +NQK  ++G    N  EI K PS+
Sbjct: 3   VRRREISKLNSRSGTFRAQASNVGIGSGGYEGKEELDNQKSFVNGPPGDNLPEIVKPPSK 62

Query: 95  ILYPVSIALVLLGCGLVFSLIAFVKGGPTLVLAAIAKSGFTAAFSLIFVSEIGDKTFFIA 154
           I YP+SIA+VLLGC LVFSLIAF++GGP+ +LAAIAKSG TAAF+LIFVSEIGDKTFFIA
Sbjct: 63  IPYPLSIAIVLLGCTLVFSLIAFLRGGPSSILAAIAKSGLTAAFTLIFVSEIGDKTFFIA 122

Query: 155 ALLAMQYEKVLVLLGSMAALALMTVLSVVIGIIFHSVPSQFQTTLPIGEYAAVTLLMFFG 214
           ALLAMQYEK LVLLGSM AL+LMT+LSVVIG IF+SVP+QFQTTLPIGEYAAVTLLMFFG
Sbjct: 123 ALLAMQYEKGLVLLGSMGALSLMTILSVVIGRIFNSVPAQFQTTLPIGEYAAVTLLMFFG 182

Query: 215 LKSIKDAWDLPSKEVKSGDKNGRELDELAEAEELVKEKLSKRLSNPLEIIWKSFSLVFFA 274
           LKSIKDAWDLPSK+ K+GDK+  ELDE AEAEELVKEK+SK L+NP EI+WKSFSLVFFA
Sbjct: 183 LKSIKDAWDLPSKDAKTGDKSCPELDEYAEAEELVKEKVSKPLTNPFEIVWKSFSLVFFA 242

Query: 275 EWGDRSMLATIALGAAQSPWGVASGAIAGHLLATSFAVLGGAFLANYISEKLVGYIGGVL 334
           EWGDRSMLATIALGAAQSPWGVA+GAIAGHL+ATSFA+LGGAFLANYISEKLVGY+GGVL
Sbjct: 243 EWGDRSMLATIALGAAQSPWGVATGAIAGHLVATSFAILGGAFLANYISEKLVGYLGGVL 302

Query: 335 FLVFAVATFFGVF 347
           FLVFAVATFFG F
Sbjct: 303 FLVFAVATFFGFF 315

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534846|ref|XP_003535962.1| PREDICTED: GDT1-like protein 2, chloroplastic-like [Glycine max]

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 266/355 (74%), Positives = 295/355 (83%), Gaps = 9/355 (2%)

Query: 1   MQNLAPHKPVISRTKLPLLLAV-DSLPSRASLLRRIPISPSLRCRELSRLNLSHGKFIVQ 59
           M+ L PH P++SR KLP  LAV D+LP+ +S   R  +   LRCR+ SRL+L+ G    Q
Sbjct: 1   MKGLGPHAPLVSRGKLPPSLAVVDALPTCSSYFSRTTVLYPLRCRQKSRLSLARGTIRAQ 60

Query: 60  ASNI-GVGSGGH------EGSNESENQKISGNSSEIQKAPSRILYPVSIALVLLGCGLVF 112
           ASNI GV  G +      +G N  E   I G+SS + K P RI YP+SIA VLLGC LVF
Sbjct: 61  ASNISGVEPGDYGSNTEKDGQNVFEGNVIEGSSSNVVKPPDRIPYPLSIAFVLLGCALVF 120

Query: 113 SLIAFVKGGPTLVLAAIAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYEKVLVLLGSMA 172
           SLIAFVKGGP+ VLAAIAKSGFTAAF+LIFVSEIGDKTFFIAALLAMQYEK LVLLGSM 
Sbjct: 121 SLIAFVKGGPSSVLAAIAKSGFTAAFTLIFVSEIGDKTFFIAALLAMQYEKGLVLLGSMG 180

Query: 173 ALALMTVLSVVIGIIFHSVPSQFQTTLPIGEYAAVTLLMFFGLKSIKDAWDLPSKEVKSG 232
           ALALM++LSVVIG IF SVP+QFQTTLPIGEYAAVTLL+FFGLK+IKDAWDLPS  VK G
Sbjct: 181 ALALMSILSVVIGRIFQSVPAQFQTTLPIGEYAAVTLLLFFGLKAIKDAWDLPSDVVK-G 239

Query: 233 DKNGRELDELAEAEELVKEKLSKRLSNPLEIIWKSFSLVFFAEWGDRSMLATIALGAAQS 292
           D +  ELDELAEAEELVKEK+S RLSNPLEI+WKSFSLVFFAEWGDRSMLATIALGAAQS
Sbjct: 240 DNSSPELDELAEAEELVKEKVSTRLSNPLEIVWKSFSLVFFAEWGDRSMLATIALGAAQS 299

Query: 293 PWGVASGAIAGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFFGVF 347
           PWGVASGAIAGHLLAT+ A+LGGAFLANYISEKLVGY+GG LFL+FAVATFFGVF
Sbjct: 300 PWGVASGAIAGHLLATTIAILGGAFLANYISEKLVGYLGGGLFLIFAVATFFGVF 354

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432464|ref|XP_004134019.1| PREDICTED: LOW QUALITY PROTEIN: GDT1-like protein 2, chloroplastic-like [Cucumis sativus]

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 247/356 (69%), Positives = 290/356 (81%), Gaps = 10/356 (2%)

Query: 1   MQNLAPHKPVISR-TKLPLLLAVDSLPSRAS---LLRRIPISPSLRCRELSRLNLSHGKF 56
           M+ L    P +S   KLP    +DSLPS ++   +  R  +S SL+ R ++RL+ ++GK 
Sbjct: 1   MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGGVFSRT-VSTSLKHRRVTRLSRTYGKS 59

Query: 57  IVQASNIGVGSGGHEGSNESENQKI-----SGNSSEIQKAPSRILYPVSIALVLLGCGLV 111
              +SN+ +GS G++   E E   +     S  SS    +PS + YP+SIALVL+GCGLV
Sbjct: 60  RAHSSNVSIGSDGYKHEEEKEGHHVISGSASDISSSKTXSPSGLPYPLSIALVLIGCGLV 119

Query: 112 FSLIAFVKGGPTLVLAAIAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYEKVLVLLGSM 171
           FSLIAFVKGGP+ +LAA+AKSGFTAAFSLIF+SEIGDKTFFIAALLAMQYEK LVLLGSM
Sbjct: 120 FSLIAFVKGGPSSILAAVAKSGFTAAFSLIFISEIGDKTFFIAALLAMQYEKGLVLLGSM 179

Query: 172 AALALMTVLSVVIGIIFHSVPSQFQTTLPIGEYAAVTLLMFFGLKSIKDAWDLPSKEVKS 231
            AL+LMTVLSV+IG IFHSVP+QFQTTLPIGEYAAVTLL+FFGLK+IKDAWDLPS   K 
Sbjct: 180 GALSLMTVLSVIIGRIFHSVPAQFQTTLPIGEYAAVTLLLFFGLKAIKDAWDLPSSVHKQ 239

Query: 232 GDKNGRELDELAEAEELVKEKLSKRLSNPLEIIWKSFSLVFFAEWGDRSMLATIALGAAQ 291
           GD++G ELDE  EAEELVKEK+SKRLSNPLEIIWKSFSL+FFAEWGDRSMLATIALGAAQ
Sbjct: 240 GDESGPELDEYVEAEELVKEKVSKRLSNPLEIIWKSFSLIFFAEWGDRSMLATIALGAAQ 299

Query: 292 SPWGVASGAIAGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFFGVF 347
           SPWGVA+GAI GHL+AT+ A+LGGA LA YISEKLVGY+GGVLFL+FA+ATFFGVF
Sbjct: 300 SPWGVATGAITGHLIATTIAILGGALLAKYISEKLVGYLGGVLFLIFAIATFFGVF 355

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449487508|ref|XP_004157661.1| PREDICTED: GDT1-like protein 2, chloroplastic-like [Cucumis sativus]

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 243/353 (68%), Positives = 289/353 (81%), Gaps = 11/353 (3%)

Query: 1   MQNLAPHKPVISR-TKLPLLLAVDSLPSRAS---LLRRIPISPSLRCRELSRLNLSHGKF 56
           M+ L    P +S   KLP    +DSLPS ++   +  R  +S SL+ R ++RL+ ++GK 
Sbjct: 1   MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGGVFSRT-VSTSLKHRRVTRLSRTYGKS 59

Query: 57  IVQASNIGVGSGGHEGSNESENQKI------SGNSSEIQKAPSRILYPVSIALVLLGCGL 110
              +SN+ +GS G++   E E   +        +SS+ +K+PS + YP+SIALVL+GCGL
Sbjct: 60  RAHSSNVSIGSDGYKHEEEKEGHHVISGSASDISSSKTEKSPSGLPYPLSIALVLIGCGL 119

Query: 111 VFSLIAFVKGGPTLVLAAIAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYEKVLVLLGS 170
           VFSLIAFVKGGP+ +LAA+AKSGFTAAFSLIF+SEIGDKTFFIAALLAMQYEK LVLLGS
Sbjct: 120 VFSLIAFVKGGPSSILAAVAKSGFTAAFSLIFISEIGDKTFFIAALLAMQYEKGLVLLGS 179

Query: 171 MAALALMTVLSVVIGIIFHSVPSQFQTTLPIGEYAAVTLLMFFGLKSIKDAWDLPSKEVK 230
           M AL+LMTVLSV+IG IFHSVP+QFQTTLPIGEYAAVTLL+FFGLK+IKDAWDLPS   K
Sbjct: 180 MGALSLMTVLSVIIGRIFHSVPAQFQTTLPIGEYAAVTLLLFFGLKAIKDAWDLPSSVHK 239

Query: 231 SGDKNGRELDELAEAEELVKEKLSKRLSNPLEIIWKSFSLVFFAEWGDRSMLATIALGAA 290
            GD++G ELDE  EAEELVKEK+SKRLSNPLEIIWKSFSL+FFAEWGDRSMLATIALGAA
Sbjct: 240 QGDESGPELDEYVEAEELVKEKVSKRLSNPLEIIWKSFSLIFFAEWGDRSMLATIALGAA 299

Query: 291 QSPWGVASGAIAGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATF 343
           QSPWGVA+GAI GHL+AT+ A+LGGA LA YISEKLVGY+GGVLFL+FA+ATF
Sbjct: 300 QSPWGVATGAITGHLIATTIAILGGALLAKYISEKLVGYLGGVLFLIFAIATF 352

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42566759|ref|NP_193095.2| uncharacterized protein [Arabidopsis thaliana] gi|308191636|sp|Q9T0H9.2|GDT12_ARATH RecName: Full=GDT1-like protein 2, chloroplastic; Flags: Precursor gi|332657899|gb|AEE83299.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 241/343 (70%), Positives = 268/343 (78%), Gaps = 7/343 (2%)

Query: 10  VISRTKLPLLLAVDSLPSRASLLRRIPISPSLRCRELSRLNLSHGKFIVQASN-----IG 64
           V S  KLP L   ++LP   S   R P    LRCR   +L+L  GKF V+AS+       
Sbjct: 19  VSSIQKLPFLSLSETLPCPKS--SRKPTFLPLRCRRRPKLDLLWGKFRVRASDAGVGSGS 76

Query: 65  VGSGGHEGSNESENQKISGNSSEIQKAPSRILYPVSIALVLLGCGLVFSLIAFVKGGPTL 124
              G  +GS  S   +    SSE  K      Y +SIALVLL CGLVFSLI FVKGGP+ 
Sbjct: 77  YSGGEEDGSQSSSLDQSPATSSESLKPRGPFPYSLSIALVLLSCGLVFSLITFVKGGPSS 136

Query: 125 VLAAIAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYEKVLVLLGSMAALALMTVLSVVI 184
           VLAA+AKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYEK LVLLGSM AL+LMT+LSVVI
Sbjct: 137 VLAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYEKTLVLLGSMGALSLMTILSVVI 196

Query: 185 GIIFHSVPSQFQTTLPIGEYAAVTLLMFFGLKSIKDAWDLPSKEVKSGDKNGRELDELAE 244
           G IF SVP+QFQTTLPIGEYAA+ LLMFFGLKSIKDAWDLP  E K+G++ G EL E +E
Sbjct: 197 GKIFQSVPAQFQTTLPIGEYAAIALLMFFGLKSIKDAWDLPPVEAKNGEETGIELGEYSE 256

Query: 245 AEELVKEKLSKRLSNPLEIIWKSFSLVFFAEWGDRSMLATIALGAAQSPWGVASGAIAGH 304
           AEELVKEK SK+L+NPLEI+WKSFSLVFFAEWGDRSMLAT+ALGAAQSP GVASGAIAGH
Sbjct: 257 AEELVKEKASKKLTNPLEILWKSFSLVFFAEWGDRSMLATVALGAAQSPLGVASGAIAGH 316

Query: 305 LLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFFGVF 347
           L+AT  A++GGAFLANYISEKLVGY+GG LFLVFA ATFFGVF
Sbjct: 317 LVATVLAIMGGAFLANYISEKLVGYVGGALFLVFAAATFFGVF 359

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297800930|ref|XP_002868349.1| hypothetical protein ARALYDRAFT_915557 [Arabidopsis lyrata subsp. lyrata] gi|297314185|gb|EFH44608.1| hypothetical protein ARALYDRAFT_915557 [Arabidopsis lyrata subsp. lyrata]

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 240/343 (69%), Positives = 269/343 (78%), Gaps = 7/343 (2%)

Query: 10  VISRTKLPLLLAVDSLPSRASLLRRIPISPSLRCRELSRLNLSHGKFIVQASN-----IG 64
           V S  KLP L   +SLP     + + P    LRCR   +L+L  GKF V+AS+       
Sbjct: 19  VSSIQKLPFLSLSESLPCPK--ISKKPNFLPLRCRRRPKLDLLWGKFRVRASDAGVGSGS 76

Query: 65  VGSGGHEGSNESENQKISGNSSEIQKAPSRILYPVSIALVLLGCGLVFSLIAFVKGGPTL 124
              G  +GS  S   +    SSE  K      Y +SIALVLL CGLVFSLI FVKGGP+ 
Sbjct: 77  YSGGEEDGSQRSSLDQSPATSSESLKPRGPFPYSLSIALVLLSCGLVFSLITFVKGGPSS 136

Query: 125 VLAAIAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYEKVLVLLGSMAALALMTVLSVVI 184
           VLAA+AKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYEK LVLLGSM AL+LMT+LSVVI
Sbjct: 137 VLAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYEKTLVLLGSMGALSLMTILSVVI 196

Query: 185 GIIFHSVPSQFQTTLPIGEYAAVTLLMFFGLKSIKDAWDLPSKEVKSGDKNGRELDELAE 244
           G IF SVP+QFQTTLPIGEYAA++LLMFFGLKSIKDAWDLP  E K+G++ G EL E +E
Sbjct: 197 GKIFQSVPAQFQTTLPIGEYAAISLLMFFGLKSIKDAWDLPPVEAKNGEETGIELGEYSE 256

Query: 245 AEELVKEKLSKRLSNPLEIIWKSFSLVFFAEWGDRSMLATIALGAAQSPWGVASGAIAGH 304
           AEELVKEK SK+L+NPLEI+WKSFSLVFFAEWGDRSMLAT+ALGAAQSP GVASGAIAGH
Sbjct: 257 AEELVKEKASKKLTNPLEILWKSFSLVFFAEWGDRSMLATVALGAAQSPLGVASGAIAGH 316

Query: 305 LLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFFGVF 347
           L+AT  A++GGAFLANYISEKLVGY+GG LFLVFA ATFFGVF
Sbjct: 317 LVATVLAIMGGAFLANYISEKLVGYVGGALFLVFAAATFFGVF 359

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334186495|ref|NP_001190718.1| uncharacterized protein [Arabidopsis thaliana] gi|332657900|gb|AEE83300.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 239/343 (69%), Positives = 267/343 (77%), Gaps = 7/343 (2%)

Query: 10  VISRTKLPLLLAVDSLPSRASLLRRIPISPSLRCRELSRLNLSHGKFIVQASN-----IG 64
           V S  KLP L   ++LP   S   R P     +CR   +L+L  GKF V+AS+       
Sbjct: 19  VSSIQKLPFLSLSETLPCPKS--SRKPTFLPCKCRRRPKLDLLWGKFRVRASDAGVGSGS 76

Query: 65  VGSGGHEGSNESENQKISGNSSEIQKAPSRILYPVSIALVLLGCGLVFSLIAFVKGGPTL 124
              G  +GS  S   +    SSE  K      Y +SIALVLL CGLVFSLI FVKGGP+ 
Sbjct: 77  YSGGEEDGSQSSSLDQSPATSSESLKPRGPFPYSLSIALVLLSCGLVFSLITFVKGGPSS 136

Query: 125 VLAAIAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYEKVLVLLGSMAALALMTVLSVVI 184
           VLAA+AKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYEK LVLLGSM AL+LMT+LSVVI
Sbjct: 137 VLAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYEKTLVLLGSMGALSLMTILSVVI 196

Query: 185 GIIFHSVPSQFQTTLPIGEYAAVTLLMFFGLKSIKDAWDLPSKEVKSGDKNGRELDELAE 244
           G IF SVP+QFQTTLPIGEYAA+ LLMFFGLKSIKDAWDLP  E K+G++ G EL E +E
Sbjct: 197 GKIFQSVPAQFQTTLPIGEYAAIALLMFFGLKSIKDAWDLPPVEAKNGEETGIELGEYSE 256

Query: 245 AEELVKEKLSKRLSNPLEIIWKSFSLVFFAEWGDRSMLATIALGAAQSPWGVASGAIAGH 304
           AEELVKEK SK+L+NPLEI+WKSFSLVFFAEWGDRSMLAT+ALGAAQSP GVASGAIAGH
Sbjct: 257 AEELVKEKASKKLTNPLEILWKSFSLVFFAEWGDRSMLATVALGAAQSPLGVASGAIAGH 316

Query: 305 LLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFFGVF 347
           L+AT  A++GGAFLANYISEKLVGY+GG LFLVFA ATFFGVF
Sbjct: 317 LVATVLAIMGGAFLANYISEKLVGYVGGALFLVFAAATFFGVF 359

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115485819|ref|NP_001068053.1| Os11g0544500 [Oryza sativa Japonica Group] gi|122207238|sp|Q2R2Z4.1|GDT12_ORYSJ RecName: Full=GDT1-like protein 2, chloroplastic; Flags: Precursor gi|77551400|gb|ABA94197.1| Uncharacterized protein family UPF0016 containing protein, expressed [Oryza sativa Japonica Group] gi|113645275|dbj|BAF28416.1| Os11g0544500 [Oryza sativa Japonica Group] gi|215701352|dbj|BAG92776.1| unnamed protein product [Oryza sativa Japonica Group] gi|215704478|dbj|BAG93912.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 213/323 (65%), Positives = 251/323 (77%), Gaps = 9/323 (2%)

Query: 31  LLRRIPISPSLRCRELSRLNLSHGKFIVQASNIGVGSGGHEGSN-----ESENQKISGNS 85
           L RR  +   +RCR L  L        VQ SN+ VG+G +EG       E  +   + +S
Sbjct: 28  LRRRCLVEGQVRCR-LPWLRPIRHNVRVQTSNVNVGAGSYEGGEAGSHGEHLDSSATRDS 86

Query: 86  SEIQKAPSRILYPVSIALVLLGCGLVFSLIAFVKGGPTLVLAAIAKSGFTAAFSLIFVSE 145
           ++  K PS   YP SIA VLL C L  + I F KG P+ V+A +AKSGFTAAF+LIFVSE
Sbjct: 87  NKPTKPPSGSRYPQSIAAVLLLCALASAFIVFFKGQPSAVVAMLAKSGFTAAFTLIFVSE 146

Query: 146 IGDKTFFIAALLAMQYEKVLVLLGSMAALALMTVLSVVIGIIFHSVPSQFQTTLPIGEYA 205
           IGDKTFFIAALLAMQY++ LVLLGSMAAL+LMT++SV+IG IF SVP+QFQTTLPIGEYA
Sbjct: 147 IGDKTFFIAALLAMQYQRALVLLGSMAALSLMTIVSVIIGRIFQSVPAQFQTTLPIGEYA 206

Query: 206 AVTLLMFFGLKSIKDAWDLPSKEVKSGDKNGR-ELDELAEAEELVKEKLSKRLSNPLEII 264
           A+ LL FFG KSIKDAW LP     +G+  G  E  ELAEAEELVKEK++K+L++PLE++
Sbjct: 207 AIALLAFFGFKSIKDAWQLPDN--ANGNLQGNSESGELAEAEELVKEKVAKKLTSPLEVL 264

Query: 265 WKSFSLVFFAEWGDRSMLATIALGAAQSPWGVASGAIAGHLLATSFAVLGGAFLANYISE 324
           WKSFSLVFFAEWGDRSMLATIALGAAQSP+GVASGAIAGHL+AT  A++GGAFLANY+SE
Sbjct: 265 WKSFSLVFFAEWGDRSMLATIALGAAQSPFGVASGAIAGHLVATFLAIVGGAFLANYLSE 324

Query: 325 KLVGYIGGVLFLVFAVATFFGVF 347
           KLVG IGGVLFL+FAVATFFGVF
Sbjct: 325 KLVGLIGGVLFLLFAVATFFGVF 347

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	347
TAIR|locus:2140872	359	AT4G13590 [Arabidopsis thalian	0.922	0.891	0.648	3.5e-98
TAIR|locus:2024628	370	AT1G64150 [Arabidopsis thalian	0.694	0.651	0.407	7e-38
TAIR|locus:2183632	293	AT5G36290 "AT5G36290" [Arabido	0.587	0.696	0.409	3.4e-29
WB|WBGene00021847	297	Y54F10AL.1 [Caenorhabditis ele	0.556	0.649	0.370	3.9e-28
UNIPROTKB|F1P1B3	254	TMEM165 "Uncharacterized prote	0.570	0.779	0.384	2.2e-27
MGI|MGI:894407	323	Tmem165 "transmembrane protein	0.570	0.613	0.391	2.2e-27
RGD|1306983	323	Tmem165 "transmembrane protein	0.570	0.613	0.391	2.2e-27
UNIPROTKB|F1PU63	325	TMEM165 "Uncharacterized prote	0.570	0.609	0.384	4.5e-27
ZFIN|ZDB-GENE-030131-3222	305	tmem165 "transmembrane protein	0.564	0.642	0.388	5.7e-27
UNIPROTKB|E1B731	324	TMEM165 "Uncharacterized prote	0.570	0.611	0.379	9.4e-27

TAIR|locus:2140872 AT4G13590 [Arabidopsis thaliana (taxid:3702)]

 Score = 975 (348.3 bits), Expect = 3.5e-98, P = 3.5e-98
 Identities = 212/327 (64%), Positives = 235/327 (71%)

Query:    10 VISRTKLPLLLAVDSLPSRASLLRRIPISPSLRCRELSRLNLSHGKFIVQAXXXXXXXXX 69
             V S  KLP L   ++LP   S   R P    LRCR   +L+L  GKF V+A         
Sbjct:    19 VSSIQKLPFLSLSETLPCPKS--SRKPTFLPLRCRRRPKLDLLWGKFRVRASDAGVGSGS 76

Query:    70 XXXXXXXXXQKIS-----GNSSEIQKAPSRILYPVSIALVLLGCGLVFSLIAFVKGGPTL 124
                      Q  S       SSE  K      Y +SIALVLL CGLVFSLI FVKGGP+ 
Sbjct:    77 YSGGEEDGSQSSSLDQSPATSSESLKPRGPFPYSLSIALVLLSCGLVFSLITFVKGGPSS 136

Query:   125 VLAAIAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYEKVLVLLGSMAALALMTVLSVVI 184
             VLAA+AKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYEK LVLLGSM AL+LMT+LSVVI
Sbjct:   137 VLAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYEKTLVLLGSMGALSLMTILSVVI 196

Query:   185 GIIFHSVPSQFQTTLPIGEYAAVTLLMFFGLKSIKDAWDLPSKEVKSGDKNGRXXXXXXX 244
             G IF SVP+QFQTTLPIGEYAA+ LLMFFGLKSIKDAWDLP  E K+G++ G        
Sbjct:   197 GKIFQSVPAQFQTTLPIGEYAAIALLMFFGLKSIKDAWDLPPVEAKNGEETGIELGEYSE 256

Query:   245 XXXXXXXXXSKRLSNPLEIIWKSFSLVFFAEWGDRSMLATIALGAAQSPWGVASGAIAGH 304
                      SK+L+NPLEI+WKSFSLVFFAEWGDRSMLAT+ALGAAQSP GVASGAIAGH
Sbjct:   257 AEELVKEKASKKLTNPLEILWKSFSLVFFAEWGDRSMLATVALGAAQSPLGVASGAIAGH 316

Query:   305 LLATSFAVLGGAFLANYISEKLVGYIG 331
             L+AT  A++GGAFLANYISEKLVGY+G
Sbjct:   317 LVATVLAIMGGAFLANYISEKLVGYVG 343

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:2024628 AT1G64150 [Arabidopsis thaliana (taxid:3702)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 106/260 (40%), Positives = 148/260 (56%)

Query:    81 ISGNSSEIQKAPSRILYPVSIALVLLGCGLVFSLIAFVKGGPTLVLA----AIAKSGFTA 136
             I+ +  EIQ+    +   VS ++ LLG    F+  +      +LV +        SGF +
Sbjct:   104 IAHSRREIQRV--LMFLAVSGSVALLGTDPAFAASSIPNVTQSLVTSFGDLGDISSGFAS 161

Query:   137 AFSLIFVSEIGDKTFFIAALLAMQYEKVLVLLGSMAALALMTVLSVVIGIIFHSV----P 192
             AF LIF SE+GDKTFFIAALLA +     V +G+  AL +MT++SVV+G  FH V    P
Sbjct:   162 AFLLIFFSELGDKTFFIAALLAARNSAATVFVGTFGALGIMTIISVVLGRTFHYVDEVLP 221

Query:   193 SQFQ-TTLPIGEYAAVTLLMFFGLKSIKDAWDLPSKEVKSGDKNGRXXXXXXXXXXXXXX 251
              +F  T LPI + AAV LL++FG+ ++ DA    S E K+ ++                 
Sbjct:   222 FRFGGTDLPIDDIAAVCLLVYFGVSTLLDA---VSDEGKADEEQKEAELAVSELSGNGAG 278

Query:   252 XXSKRLSNPLEIIWKSFSLVFFAEWGDRSMLATIALGAAQSPWGVASGAIAGHLLATSFA 311
               +   +N    I  +F+LVF AEWGD+S  +TIAL AA SP GV +GA+AGH  AT  A
Sbjct:   279 IVAA--ANT---IISTFALVFVAEWGDKSFFSTIALAAASSPLGVIAGALAGHGAATLLA 333

Query:   312 VLGGAFLANYISEKLVGYIG 331
             VLGG+ L N++SEK + Y+G
Sbjct:   334 VLGGSLLGNFLSEKAIAYVG 353

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0042631 "cellular response to water deprivation" evidence=RCA

TAIR|locus:2183632 AT5G36290 "AT5G36290" [Arabidopsis thaliana (taxid:3702)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 88/215 (40%), Positives = 119/215 (55%)

Query:   121 GPTLVLAAIAKSGFTA---AFSLIFVSEIGDKTFFIAALLAMQYEKVLVLLGSMAALALM 177
             G  L L A A S F A   +FS+I V+EIGD+TF IAAL+AM++ K  VL G+++AL +M
Sbjct:    69 GLNLDLDATAPSVFDALFSSFSMILVTEIGDETFIIAALMAMRHPKATVLSGALSALFVM 128

Query:   178 TVLSVVIGIIFHSVPSQFQTTLPIGEYAAVTLLMFFGLKSIKDAWDLPSKEVKSGDKNGR 237
             T+LS  +G I  ++ S+  T       AA  L  FFGL+ +  AW   S + KS  K   
Sbjct:   129 TILSTGLGRIVPNLISRKHTNS-----AATVLYAFFGLRLLYIAWR--STDSKSNQKKEM 181

Query:   238 XXXXXXXXXXXXXXXXSKRLSN-PLEIIWKSFSLVFFAEWGDRSMLATIALGAAQSPWGV 296
                              +  S     I  +SF L F AEWGDRS +ATIAL   ++  GV
Sbjct:   182 EEVEEKLESGQGKTPFRRLFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNAIGV 241

Query:   297 ASGAIAGHLLATSFAVLGGAFLANYISEKLVGYIG 331
             A GA  GH + TS AV+GG+ LA+ IS++ V  +G
Sbjct:   242 AIGASIGHTVCTSLAVVGGSMLASRISQRTVATVG 276

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

WB|WBGene00021847 Y54F10AL.1 [Caenorhabditis elegans (taxid:6239)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 79/213 (37%), Positives = 110/213 (51%)

Query:   133 GFTAAFSLIFVSEIGDKTFFIAALLAMQYEKVLVLLGSMAALALMTVLSVVIGIIFHSVP 192
             GF A+FS+I VSE+GDKT+FIA +++M++ ++ V  G+M ALALMTVLS  +G I   +P
Sbjct:    68 GFLASFSVIVVSELGDKTWFIAVIMSMRHSRLTVFSGAMGALALMTVLSACLGWITQVIP 127

Query:   193 SQFQTTLPIGEYAAVTLLMFFGLKSIKDAWDLPSKEVKSG---------DKNGRXXXXXX 243
                     +  Y +  L   FGLK + + W +   E + G          + G       
Sbjct:   128 RA------VTYYLSTALFALFGLKMLHEGWTMSPNEGQEGYEEAQAEVAKREGELDAGKF 181

Query:   244 XXXXXXXXXXSKRLSNPL-----EIIWKSFSLVFFAEWGDRSMLATIALGAAQSPWGVAS 298
                       S+  +  +      I  ++FSL F AEWGDRS L TI LGA ++  GV  
Sbjct:   182 EMLEGGGGVASQSETRKIFLFTSRIFIEAFSLTFVAEWGDRSQLTTIILGARENIAGVIG 241

Query:   299 GAIAGHLLATSFAVLGGAFLANYISEKLVGYIG 331
             G I GH L T  AV+GG  +A  IS + V  IG
Sbjct:   242 GGILGHALCTGIAVIGGKIVAQRISVRTVTLIG 274

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1P1B3 TMEM165 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 80/208 (38%), Positives = 110/208 (52%)

Query:   134 FTAAFSLIFVSEIGDKTFFIAALLAMQYEKVLVLLGSMAALALMTVLSVVIGIIFHSVPS 193
             F AA S+I VSE+GDKTFFIAA++AM+Y ++ VL G+M AL LMT LSV+ G     +P 
Sbjct:    27 FVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALGLMTCLSVLFGYATTVIPR 86

Query:   194 QFQTTLPIGEYAAVTLLMFF-GLKSIKDAW--DLPS--KEVKSGDKNGRXXXXXXX---- 244
              +   +    +A   + M   GLK   D    +L     E+K  D+  +           
Sbjct:    87 VYTYYVSTALFAIFGIRMLREGLKMSPDEGQEELEEVQAEIKKKDEELQRTKLLNGPGDV 146

Query:   245 XXXXXXXXXSKRLSNPLEIIW-KSFSLVFFAEWGDRSMLATIALGAAQSPWGVASGAIAG 303
                       K+  + +  I+ ++F+L F AEWGDRS L TI L A + P+GVA G   G
Sbjct:   147 ETGSTATIPQKKWLHFISPIFVQAFTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVG 206

Query:   304 HLLATSFAVLGGAFLANYISEKLVGYIG 331
             H L T  AV+GG  +A  IS + V  IG
Sbjct:   207 HCLCTGLAVIGGRMIAQKISVRTVTIIG 234

GO:0016020 "membrane" evidence=IEA

MGI|MGI:894407 Tmem165 "transmembrane protein 165" [Mus musculus (taxid:10090)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 81/207 (39%), Positives = 107/207 (51%)

Query:   134 FTAAFSLIFVSEIGDKTFFIAALLAMQYEKVLVLLGSMAALALMTVLSVVIGIIFHSVPS 193
             F AA S+I VSE+GDKTFFIAA++AM+Y ++ VL G+M ALALMT LSV+ G     +P 
Sbjct:    97 FVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALALMTCLSVLFGYATTVIPR 156

Query:   194 QFQTTLPIGEYAAVTLLMFF-GLKSIKDAWDLPSKEV----KSGDKNGRXXXXXXXXXXX 248
              +   +    +A   + M   GLK   D      +EV    K  D+  +           
Sbjct:   157 VYTYYVSTALFAIFGIRMLREGLKMSPDEGQEELEEVQAELKKKDEEFQRTKLLNGPDVE 216

Query:   249 XXXXXS----KRLSNPLEIIWKSFSLVFFAEWGDRSMLATIALGAAQSPWGVASGAIAGH 304
                  +    K L     I  ++ +L F AEWGDRS L TI L A + P+GVA G   GH
Sbjct:   217 TGTSTAIPQKKWLHFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGH 276

Query:   305 LLATSFAVLGGAFLANYISEKLVGYIG 331
              L T  AV+GG  +A  IS + V  IG
Sbjct:   277 CLCTGLAVIGGRMIAQKISVRTVTIIG 303

GO:0003674 "molecular_function" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|1306983 Tmem165 "transmembrane protein 165" [Rattus norvegicus (taxid:10116)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 81/207 (39%), Positives = 107/207 (51%)

Query:   134 FTAAFSLIFVSEIGDKTFFIAALLAMQYEKVLVLLGSMAALALMTVLSVVIGIIFHSVPS 193
             F AA S+I VSE+GDKTFFIAA++AM+Y ++ VL G+M ALALMT LSV+ G     +P 
Sbjct:    97 FVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALALMTCLSVLFGYATTVIPR 156

Query:   194 QFQTTLPIGEYAAVTLLMFF-GLKSIKDAWDLPSKEV----KSGDKNGRXXXXXXXXXXX 248
              +   +    +A   + M   GLK   D      +EV    K  D+  +           
Sbjct:   157 VYTYYVSTALFAIFGIRMLREGLKMSPDEGQEELEEVQAELKKKDEEFQRTKLLNGPDVE 216

Query:   249 XXXXXS----KRLSNPLEIIWKSFSLVFFAEWGDRSMLATIALGAAQSPWGVASGAIAGH 304
                  +    K L     I  ++ +L F AEWGDRS L TI L A + P+GVA G   GH
Sbjct:   217 TGTSTAIPQKKWLHFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGH 276

Query:   305 LLATSFAVLGGAFLANYISEKLVGYIG 331
              L T  AV+GG  +A  IS + V  IG
Sbjct:   277 CLCTGLAVIGGRMIAQKISVRTVTIIG 303

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1PU63 TMEM165 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 80/208 (38%), Positives = 108/208 (51%)

Query:   134 FTAAFSLIFVSEIGDKTFFIAALLAMQYEKVLVLLGSMAALALMTVLSVVIGIIFHSVPS 193
             F AA S+I VSE+GDKTFFIAA++AM+Y ++ VL G+M AL LMT LSV+ G     +P 
Sbjct:    98 FVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALGLMTCLSVLFGYATTVIPR 157

Query:   194 QFQTTLPIGEYAAVTLLMFF-GLKSIKDAWDLPSKEV----KSGDKNGRXXXXXXX---- 244
              +   +    +A   + M   GLK   D      +EV    K  D+  +           
Sbjct:   158 VYTYYVSTALFAIFGIRMLREGLKMSPDEGQEELEEVQAELKKKDEEFQRTKLLNGPGDV 217

Query:   245 XXXXXXXXXSKRLSNPLEIIW-KSFSLVFFAEWGDRSMLATIALGAAQSPWGVASGAIAG 303
                       KR  + +  I+ ++ +L F AEWGDRS L TI L A + P+GVA G   G
Sbjct:   218 ETGASTAIPQKRWLHFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVG 277

Query:   304 HLLATSFAVLGGAFLANYISEKLVGYIG 331
             H L T  AV+GG  +A  IS + V  IG
Sbjct:   278 HCLCTGLAVIGGRMIAQKISVRTVTIIG 305

GO:0016020 "membrane" evidence=IEA

ZFIN|ZDB-GENE-030131-3222 tmem165 "transmembrane protein 165" [Danio rerio (taxid:7955)]

 Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 82/211 (38%), Positives = 110/211 (52%)

Query:   134 FTAAFSLIFVSEIGDKTFFIAALLAMQYEKVLVLLGSMAALALMTVLSVVIGIIFHSVPS 193
             F AA S+I VSE+GDKTFFIAA++AM+Y ++ VL G+M AL LMT LSV+ G     +P 
Sbjct:    77 FAAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALGLMTCLSVLFGYATTIIPR 136

Query:   194 QFQTTLPIGEYAAVTLLMFF-GLKSIKDAW--DLPS--KEVKSGDK--------NGRXXX 240
              +   +    +A   + M   GL+   D    +L     E+K  D+        NG    
Sbjct:   137 IYTYYISTALFAIFGVRMLREGLRMSPDEGQEELEEVQAEIKKKDEELQRYKLANGAPDV 196

Query:   241 XXXXXXXXXXXXXSKRLSNPLEIIWKSFSLVFFAEWGDRSMLATIALGAAQSPWGVASGA 300
                             L +P+ I  ++ +L F AEWGDRS LATI L A + P+GVA G 
Sbjct:   197 EAGTAANMLPQRKWPSLISPIFI--QALTLTFLAEWGDRSQLATIVLAAREDPFGVAVGG 254

Query:   301 IAGHLLATSFAVLGGAFLANYISEKLVGYIG 331
               GH L T  AV+GG  +A  IS + V  IG
Sbjct:   255 TLGHCLCTGLAVIGGRMVAQKISVRTVTIIG 285

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E1B731 TMEM165 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 79/208 (37%), Positives = 108/208 (51%)

Query:   134 FTAAFSLIFVSEIGDKTFFIAALLAMQYEKVLVLLGSMAALALMTVLSVVIGIIFHSVPS 193
             F AA S+I VSE+GDKTFFIAA++AM+Y ++ VL G+M AL LMT LSV+ G     +P 
Sbjct:    97 FVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALGLMTCLSVLFGYATTVIPR 156

Query:   194 QFQTTLPIGEYAAVTLLMFF-GLKSIKDAWDLPSKEV----KSGDKNGRXXXXXXX---- 244
              +   +    +A   + M   GLK   D      +EV    K  D+  +           
Sbjct:   157 VYTYYVSTALFAIFGIRMLREGLKMSPDEGQEELEEVQAELKKKDEEFQRTKLLNGPGDV 216

Query:   245 XXXXXXXXXSKRLSNPLEIIW-KSFSLVFFAEWGDRSMLATIALGAAQSPWGVASGAIAG 303
                       K+  + +  I+ ++ +L F AEWGDRS L TI L A + P+GVA G   G
Sbjct:   217 ETGTSTTIPQKKWLHFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVG 276

Query:   304 HLLATSFAVLGGAFLANYISEKLVGYIG 331
             H L T  AV+GG  +A  IS + V  IG
Sbjct:   277 HCLCTGLAVIGGRMIAQKISVRTVTIIG 304

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2R2Z4	GDT12_ORYSJ	No assigned EC number	0.6594	0.9048	0.9048	yes	no
Q9T0H9	GDT12_ARATH	No assigned EC number	0.7026	0.9682	0.9359	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	347
COG2119	190	COG2119, COG2119, Predicted membrane protein [Func	2e-36
pfam01169	78	pfam01169, UPF0016, Uncharacterized protein family	1e-19
pfam01169	78	pfam01169, UPF0016, Uncharacterized protein family	3e-13
COG2119	190	COG2119, COG2119, Predicted membrane protein [Func	2e-07
COG2119	190	COG2119, COG2119, Predicted membrane protein [Func	6e-04

>gnl|CDD|225030 COG2119, COG2119, Predicted membrane protein [Function unknown]

 Score =  130 bits (328), Expect = 2e-36
 Identities = 66/215 (30%), Positives = 103/215 (47%), Gaps = 33/215 (15%)

Query: 134 FTAAFSLIFVSEIGDKTFFIAALLAMQYEKVLVLLGSMAALALMTVLSVVIGIIFHSVPS 193
              +  ++ ++EIGDKT  IA LLAM+Y +  V  G   AL  M  L+V++G    S+  
Sbjct: 4   LLVSLLMVALAEIGDKTQLIAMLLAMRYRRWPVFAGIAIALFAMHALAVLVGHAAASLLP 63

Query: 194 QFQTTLPIGEYAAVTLLMFFGLKSIKDAWDLPSKEVKSGDKNGRELDELAEAEELVKEKL 253
           +         +A+  L + F +  + +                +E DE A+A        
Sbjct: 64  E-----RPLAWASGVLFLAFAVWMLIED---------------KEDDEEAQAAS------ 97

Query: 254 SKRLSNPLEIIWKSFSLVFFAEWGDRSMLATIALGA-AQSPWGVASGAIAGHLLATSFAV 312
                 P  +   +F   F AE GD++ +ATIAL A   SPW V +G   G +LA+  AV
Sbjct: 98  ------PRGVFVTTFITFFLAELGDKTQIATIALAADYHSPWAVFAGTTLGMILASVLAV 151

Query: 313 LGGAFLANYISEKLVGYIGGVLFLVFAVATFFGVF 347
           L G  +A  + E+L+ +I  +LFL+FA+   + VF
Sbjct: 152 LLGKLIAGKLPERLLRFIAALLFLIFALVLLWQVF 186

Length = 190

>gnl|CDD|216341 pfam01169, UPF0016, Uncharacterized protein family UPF0016

 Score = 81.4 bits (202), Expect = 1e-19
 Identities = 36/78 (46%), Positives = 48/78 (61%), Gaps = 2/78 (2%)

Query: 264 IWKSFSLVFFAEWGDRSMLATIALGA--AQSPWGVASGAIAGHLLATSFAVLGGAFLANY 321
              SF L+F AE GD++ LATIAL A  ++SPW V  GA     LAT  AVL G +LA  
Sbjct: 1   FLTSFLLIFLAELGDKTQLATIALAARYSRSPWAVFLGATLALALATLLAVLLGRWLATL 60

Query: 322 ISEKLVGYIGGVLFLVFA 339
           +  +++ ++ GVLFL F 
Sbjct: 61  LPPRVLHFVAGVLFLAFG 78

This family contains integral membrane proteins of unknown function. Most members of the family contain two copies of a region that contains an EXGD motif. Each of these regions contains three predicted transmembrane regions. Length = 78

>gnl|CDD|216341 pfam01169, UPF0016, Uncharacterized protein family UPF0016

 Score = 63.6 bits (156), Expect = 3e-13
 Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 2/54 (3%)

Query: 134 FTAAFSLIFVSEIGDKTFFIAALLAMQYEK--VLVLLGSMAALALMTVLSVVIG 185
           F  +F LIF++E+GDKT      LA +Y +    V LG+  ALAL T+L+V++G
Sbjct: 1   FLTSFLLIFLAELGDKTQLATIALAARYSRSPWAVFLGATLALALATLLAVLLG 54

This family contains integral membrane proteins of unknown function. Most members of the family contain two copies of a region that contains an EXGD motif. Each of these regions contains three predicted transmembrane regions. Length = 78

>gnl|CDD|225030 COG2119, COG2119, Predicted membrane protein [Function unknown]

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 27/80 (33%), Positives = 39/80 (48%)

Query: 261 LEIIWKSFSLVFFAEWGDRSMLATIALGAAQSPWGVASGAIAGHLLATSFAVLGGAFLAN 320
           LE +  S  +V  AE GD++ L  + L      W V +G         + AVL G   A+
Sbjct: 1   LEALLVSLLMVALAEIGDKTQLIAMLLAMRYRRWPVFAGIAIALFAMHALAVLVGHAAAS 60

Query: 321 YISEKLVGYIGGVLFLVFAV 340
            + E+ + +  GVLFL FAV
Sbjct: 61  LLPERPLAWASGVLFLAFAV 80

Length = 190

>gnl|CDD|225030 COG2119, COG2119, Predicted membrane protein [Function unknown]

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 6/96 (6%)

Query: 127 AAIAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYEKV-LVLLGSMAALALMTVLSVVIG 185
           AA  +  F   F   F++E+GDKT      LA  Y     V  G+   + L +VL+V++G
Sbjct: 95  AASPRGVFVTTFITFFLAELGDKTQIATIALAADYHSPWAVFAGTTLGMILASVLAVLLG 154

Query: 186 IIFHSVPSQFQTTLPIGEYAAVTLLMFFGLKSIKDA 221
            +      +           A  L + F L  +   
Sbjct: 155 KLIAGKLPERLLRF-----IAALLFLIFALVLLWQV 185

Length = 190

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	347
KOG2881	294	consensus Predicted membrane protein [Function unk	100.0
COG2119	190	Predicted membrane protein [Function unknown]	100.0
PF01169	78	UPF0016: Uncharacterized protein family UPF0016; I	99.9
PF01169	78	UPF0016: Uncharacterized protein family UPF0016; I	99.84
COG2119	190	Predicted membrane protein [Function unknown]	99.74
KOG2881	294	consensus Predicted membrane protein [Function unk	99.65
COG4280	236	Predicted membrane protein [Function unknown]	97.93
PRK11469	188	hypothetical protein; Provisional	97.89
PF01810	191	LysE: LysE type translocator; InterPro: IPR001123	97.65
TIGR02840	206	spore_YtaF putative sporulation protein YtaF. This	97.6
COG1971	190	Predicted membrane protein [Function unknown]	97.45
PF03741	183	TerC: Integral membrane protein TerC family; Inter	97.17
COG1280	208	RhtB Putative threonine efflux protein [Amino acid	96.78
TIGR00949	185	2A76 The Resistance to Homoserine/Threonine (RhtB)	96.55
TIGR03718	302	R_switched_Alx integral membrane protein, TerC fam	96.27
PRK09304	207	arginine exporter protein; Provisional	96.12
COG0861	254	TerC Membrane protein TerC, possibly involved in t	96.04
TIGR03716	215	R_switched_YkoY integral membrane protein, YkoY fa	95.69
PF03596	191	Cad: Cadmium resistance transporter; InterPro: IPR	95.65
TIGR03717	176	R_switched_YjbE integral membrane protein, YjbE fa	95.54
PRK10229	206	threonine efflux system; Provisional	95.41
PRK10520	205	rhtB homoserine/homoserine lactone efflux protein;	95.35
PRK10958	212	leucine export protein LeuE; Provisional	95.2
TIGR00145	283	FTR1 family protein. A characterized member from y	94.98
PRK10323	195	cysteine/O-acetylserine exporter; Provisional	94.2
TIGR02840	206	spore_YtaF putative sporulation protein YtaF. This	94.16
PF01914	203	MarC: MarC family integral membrane protein; Inter	94.07
COG0730	258	Predicted permeases [General function prediction o	93.84
PRK10019	279	nickel/cobalt efflux protein RcnA; Provisional	93.65
COG4280	236	Predicted membrane protein [Function unknown]	93.18
PF03239	306	FTR1: Iron permease FTR1 family; InterPro: IPR0049	92.83
PRK10995	221	inner membrane protein; Provisional	92.57
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	89.7
PRK10621	266	hypothetical protein; Provisional	89.44
TIGR00948	177	2a75 L-lysine exporter.	89.23
PRK11469	188	hypothetical protein; Provisional	88.67
PRK11111	214	hypothetical protein; Provisional	88.64
COG4300	205	CadD Predicted permease, cadmium resistance protei	88.2
TIGR00427	201	membrane protein, MarC family. MarC is a protein t	81.83
COG2095	203	MarC Multiple antibiotic transporter [Intracellula	80.75

>KOG2881 consensus Predicted membrane protein [Function unknown]

Probab=100.00  E-value=7.2e-52  Score=390.96  Aligned_cols=238  Identities=44%  Similarity=0.703  Sum_probs=188.5

Q ss_pred             CCcccccccccCCCcccccCCCCCCChhhHHHHHhhhcccchhhhhhcCCchhHHHHHHHhhHHHHHHHHHhhhcCchhH
Q 019035           72 GSNESENQKISGNSSEIQKAPSRILYPVSIALVLLGCGLVFSLIAFVKGGPTLVLAAIAKSGFTAAFSLIFVSEIGDKTF  151 (347)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~sF~lIflAEiGDKTQ  151 (347)
                      .+++.+.+...+..++.+.+++..+.++...                     ++.     ++|+.||++||++|+|||||
T Consensus        33 ~~V~~~~~~v~~l~~~~~a~~~~~d~~~~~~---------------------s~~-----~~f~~SiSmI~vsEiGDKTF   86 (294)
T KOG2881|consen   33 VDVKLSLIAVVTLITLAEAHKSNADISSTAS---------------------SFL-----QGFTASISMIFVSEIGDKTF   86 (294)
T ss_pred             hhccCCccceeeccchhhcCccccccccchH---------------------HHH-----HHHHHhhheeeeeeccchHH
Confidence            3444555444555566666666655433322                     222     48999999999999999999


Q ss_pred             HHHHHHHcccCchhHHHHHHHHHHHHHHHHHHHHhhhhc-CCchhhcccchhHHHHHHHHHHHHHHHhhhhhcCCCcccc
Q 019035          152 FIAALLAMQYEKVLVLLGSMAALALMTVLSVVIGIIFHS-VPSQFQTTLPIGEYAAVTLLMFFGLKSIKDAWDLPSKEVK  230 (347)
Q Consensus       152 lia~lLA~Ry~~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~-lP~~~~~~l~~~~~~aa~lFl~FGl~~l~~~w~L~~~~~~  230 (347)
                      |+|++|||||+|..||.|++.|+++||+||+++|+..+. +|..|      |++++.++|++||+||+||+|.+++++.+
T Consensus        87 fiAAlmAmr~~R~~Vf~Ga~~AL~lMTiLS~~lG~aap~lipr~~------T~~~~t~LF~iFGlkmL~eg~~~~~~~~~  160 (294)
T KOG2881|consen   87 FIAALMAMRYPRLTVFSGAMSALALMTILSVLLGWAAPNLIPRKY------TYYLATALFLIFGLKMLKEGWEMSPSEGQ  160 (294)
T ss_pred             HHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHH------HHHHHHHHHHHHHHHHHHHhhcCCCccch
Confidence            999999999999999999999999999999999999876 56555      38999999999999999999999765431


Q ss_pred             CCCCCcchhhhHHH----HHHHHH----------------HHhhccCCC-hhHHHHHHHHHHHHhhcCChhHHHHHHHhc
Q 019035          231 SGDKNGRELDELAE----AEELVK----------------EKLSKRLSN-PLEIIWKSFSLVFFAEWGDRSMLATIALGA  289 (347)
Q Consensus       231 ~gd~~~~e~~E~~E----aee~~~----------------~k~s~~~~~-~~~~fl~sF~liFLAE~GDKTQLaTiaLAa  289 (347)
                            +|.+|.++    .++..+                ++..++... ..++|+++|.++|++||||||||+|++||+
T Consensus       161 ------eE~eEVe~el~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~t~ffspifikaFsltF~aEwGDRSQlaTI~laA  234 (294)
T KOG2881|consen  161 ------EELEEVEAELAKREDELDRLEEGLPGSAETGSQKSKFRRKLTLFFSPIFIKAFSLTFLAEWGDRSQLATIALAA  234 (294)
T ss_pred             ------hhHHHHHHHHHhccchhhhhhhcCCCCCccchhhhhhhHHHHHhccHHHHHHHHHHHHHHhccHHHHHHHHHhc
Confidence                  12121111    000000                000011111 125899999999999999999999999999


Q ss_pred             ccCCceeehHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHhcC
Q 019035          290 AQSPWGVASGAIAGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFFGVF  347 (347)
Q Consensus       290 ~~~p~~V~~Ga~lal~l~t~lAV~~G~~l~~~Ip~~~i~~~agvlFl~FGv~tL~~~f  347 (347)
                      +.+|+.|++|+++||.+||++||++|++++++|++|++.+++|++|++||+..+++.|
T Consensus       235 ~en~~gV~~G~~iGH~lCT~lAVigGk~lAskIS~rtVt~~ggi~Fi~Fgl~~i~~~~  292 (294)
T KOG2881|consen  235 DENPLGVAIGAIIGHALCTGLAVIGGKYLASKISVRTVTLIGGILFIIFGLVYIFQGF  292 (294)
T ss_pred             ccCcceeeeccHHHHHHHHHHHHhhhHHHhhhheeEEEEEecchhHHHHHHHHHhcCC
Confidence            9999999999999999999999999999999999999999999999999999998765

>COG2119 Predicted membrane protein [Function unknown]

Probab=100.00  E-value=3e-47  Score=344.56  Aligned_cols=183  Identities=36%  Similarity=0.591  Sum_probs=161.9

Q ss_pred             hhHHHHHHHHHhhhcCchhHHHHHHHHcccCchhHHHHHHHHHHHHHHHHHHHHhhhhc-CCchhhcccchhHHHHHHHH
Q 019035          132 SGFTAAFSLIFVSEIGDKTFFIAALLAMQYEKVLVLLGSMAALALMTVLSVVIGIIFHS-VPSQFQTTLPIGEYAAVTLL  210 (347)
Q Consensus       132 ~~f~~sF~lIflAEiGDKTQlia~lLA~Ry~~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~-lP~~~~~~l~~~~~~aa~lF  210 (347)
                      ++|+.|.++|+++|+|||||+++++||+||+|++||.|+..|++.||++++++|++... +|+++.      +|..+.+|
T Consensus         2 ~~~~~s~~~v~laEiGDKT~lia~llA~r~~~~~v~~g~~~a~~~m~~la~~vG~~~~~~~~~~~~------~~~~~~~F   75 (190)
T COG2119           2 EALLVSLLMVALAEIGDKTQLIAMLLAMRYRRWPVFAGIAIALFAMHALAVLVGHAAASLLPERPL------AWASGVLF   75 (190)
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhccCchhHH------HHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999998876 688886      68999999


Q ss_pred             HHHHHHHhhhhhcCCCccccCCCCCcchhhhHHHHHHHHHHHhhccCCChhHHHHHHHHHHHHhhcCChhHHHHHHHhcc
Q 019035          211 MFFGLKSIKDAWDLPSKEVKSGDKNGRELDELAEAEELVKEKLSKRLSNPLEIIWKSFSLVFFAEWGDRSMLATIALGAA  290 (347)
Q Consensus       211 l~FGl~~l~~~w~L~~~~~~~gd~~~~e~~E~~Eaee~~~~k~s~~~~~~~~~fl~sF~liFLAE~GDKTQLaTiaLAa~  290 (347)
                      +.||+|+++     +++++   ++   |      .+          ..+++.+|.++|+++|++||||||||+|++||++
T Consensus        76 lafav~~l~-----edk~~---~~---e------~~----------~~~~~~~f~~tfi~~FlaE~GDKTQiATIaLaA~  128 (190)
T COG2119          76 LAFAVWMLI-----EDKED---DE---E------AQ----------AASPRGVFVTTFITFFLAELGDKTQIATIALAAD  128 (190)
T ss_pred             HHHHHHHhc-----ccccc---cc---c------cc----------ccccccHHHHHHHHHHHHHhccHHHHHHHHHhhc
Confidence            999996653     22211   11   0      00          0134668999999999999999999999999999


Q ss_pred             cC-CceeehHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHhcC
Q 019035          291 QS-PWGVASGAIAGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFFGVF  347 (347)
Q Consensus       291 ~~-p~~V~~Ga~lal~l~t~lAV~~G~~l~~~Ip~~~i~~~agvlFl~FGv~tL~~~f  347 (347)
                      |+ ||.||+|+++||++|++++|++|+++++|+|+|+++.++|++|++||+..+|+.|
T Consensus       129 ~~~~~~V~~Gt~lg~~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~fal~~~~~~~  186 (190)
T COG2119         129 YHSPWAVFAGTTLGMILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFALVLLWQVF  186 (190)
T ss_pred             CCCceeeehhhHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            75 6999999999999999999999999999999999999999999999999999864

>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities

Probab=99.90  E-value=2.5e-24  Score=171.16  Aligned_cols=76  Identities=47%  Similarity=0.772  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHhhcCChhHHHHHHHhccc--CCceeehHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHH
Q 019035          264 IWKSFSLVFFAEWGDRSMLATIALGAAQ--SPWGVASGAIAGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFA  339 (347)
Q Consensus       264 fl~sF~liFLAE~GDKTQLaTiaLAa~~--~p~~V~~Ga~lal~l~t~lAV~~G~~l~~~Ip~~~i~~~agvlFl~FG  339 (347)
                      |+++|.++|++|||||||++|++||++|  +|+.|++|+++|++++|+++|++|+++.+++|++++++++|++|++||
T Consensus         1 F~~sf~~iflaE~GDKTQl~t~~La~~~~~~~~~V~~G~~~al~~~~~lav~~G~~l~~~ip~~~i~~~~~~lFl~fG   78 (78)
T PF01169_consen    1 FLTSFLLIFLAELGDKTQLATIALAARYPRNPWPVFAGATLALALATGLAVLLGSWLASRIPERYIKWVAGALFLLFG   78 (78)
T ss_pred             CHHHHHHHHHHHhCcHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
Confidence            5789999999999999999999999999  899999999999999999999999999999999999999999999997

These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane

>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities

Probab=99.84  E-value=3.7e-21  Score=153.07  Aligned_cols=75  Identities=37%  Similarity=0.644  Sum_probs=69.3

Q ss_pred             HHHHHHHHHhhhcCchhHHHHHHHHccc--CchhHHHHHHHHHHHHHHHHHHHHhhhh-cCCchhhcccchhHHHHHHHH
Q 019035          134 FTAAFSLIFVSEIGDKTFFIAALLAMQY--EKVLVLLGSMAALALMTVLSVVIGIIFH-SVPSQFQTTLPIGEYAAVTLL  210 (347)
Q Consensus       134 f~~sF~lIflAEiGDKTQlia~lLA~Ry--~~~~Vf~Ga~~Al~l~t~LaV~~G~~l~-~lP~~~~~~l~~~~~~aa~lF  210 (347)
                      |+++|.++|++|+|||||++++.||+||  ++++|++|+.+|++++|++++++|+++. ++|++++      ++.++++|
T Consensus         1 F~~sf~~iflaE~GDKTQl~t~~La~~~~~~~~~V~~G~~~al~~~~~lav~~G~~l~~~ip~~~i------~~~~~~lF   74 (78)
T PF01169_consen    1 FLTSFLLIFLAELGDKTQLATIALAARYPRNPWPVFAGATLALALATGLAVLLGSWLASRIPERYI------KWVAGALF   74 (78)
T ss_pred             CHHHHHHHHHHHhCcHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH------HHHHHHHH
Confidence            6789999999999999999999999999  4556999999999999999999999885 6999988      68999999


Q ss_pred             HHHH
Q 019035          211 MFFG  214 (347)
Q Consensus       211 l~FG  214 (347)
                      ++||
T Consensus        75 l~fG   78 (78)
T PF01169_consen   75 LLFG   78 (78)
T ss_pred             HHHC
Confidence            9886

These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane

>COG2119 Predicted membrane protein [Function unknown]

Probab=99.74  E-value=5.8e-18  Score=154.25  Aligned_cols=85  Identities=31%  Similarity=0.449  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHhhcCChhHHHHHHHhcccCCceeehHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHH
Q 019035          262 EIIWKSFSLVFFAEWGDRSMLATIALGAAQSPWGVASGAIAGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVA  341 (347)
Q Consensus       262 ~~fl~sF~liFLAE~GDKTQLaTiaLAa~~~p~~V~~Ga~lal~l~t~lAV~~G~~l~~~Ip~~~i~~~agvlFl~FGv~  341 (347)
                      +.+..+.++++++|+|||||+.++.||+||+|++|+.|+..|++.+|.+++++|++.+..+|+++.++.++++|++||+|
T Consensus         2 ~~~~~s~~~v~laEiGDKT~lia~llA~r~~~~~v~~g~~~a~~~m~~la~~vG~~~~~~~~~~~~~~~~~~~Flafav~   81 (190)
T COG2119           2 EALLVSLLMVALAEIGDKTQLIAMLLAMRYRRWPVFAGIAIALFAMHALAVLVGHAAASLLPERPLAWASGVLFLAFAVW   81 (190)
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhc
Q 019035          342 TFFGV  346 (347)
Q Consensus       342 tL~~~  346 (347)
                      ++++.
T Consensus        82 ~l~ed   86 (190)
T COG2119          82 MLIED   86 (190)
T ss_pred             Hhccc
Confidence            99863

>KOG2881 consensus Predicted membrane protein [Function unknown]

Probab=99.65  E-value=1.7e-16  Score=151.29  Aligned_cols=88  Identities=27%  Similarity=0.356  Sum_probs=85.1

Q ss_pred             ChhHHHHHHHHHHHHhhcCChhHHHHHHHhcccCCceeehHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHH
Q 019035          259 NPLEIIWKSFSLVFFAEWGDRSMLATIALGAAQSPWGVASGAIAGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVF  338 (347)
Q Consensus       259 ~~~~~fl~sF~liFLAE~GDKTQLaTiaLAa~~~p~~V~~Ga~lal~l~t~lAV~~G~~l~~~Ip~~~i~~~agvlFl~F  338 (347)
                      +....|..+++++|++|+||||.+.++.||+||+...||.|++.|++++|.+++++|+...+.+|.++.+++++++|++|
T Consensus        64 s~~~~f~~SiSmI~vsEiGDKTFfiAAlmAmr~~R~~Vf~Ga~~AL~lMTiLS~~lG~aap~lipr~~T~~~~t~LF~iF  143 (294)
T KOG2881|consen   64 SFLQGFTASISMIFVSEIGDKTFFIAALMAMRYPRLTVFSGAMSALALMTILSVLLGWAAPNLIPRKYTYYLATALFLIF  143 (294)
T ss_pred             HHHHHHHHhhheeeeeeccchHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhc
Q 019035          339 AVATFFGV  346 (347)
Q Consensus       339 Gv~tL~~~  346 (347)
                      |+++++++
T Consensus       144 GlkmL~eg  151 (294)
T KOG2881|consen  144 GLKMLKEG  151 (294)
T ss_pred             HHHHHHHh
Confidence            99999987

>COG4280 Predicted membrane protein [Function unknown]

Probab=97.93  E-value=4.7e-05  Score=71.46  Aligned_cols=173  Identities=27%  Similarity=0.352  Sum_probs=114.3

Q ss_pred             HHHHHHcccCchhHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhcccchhHHHHHHHHHHHHHHHhhhhhcCCCccccCC
Q 019035          153 IAALLAMQYEKVLVLLGSMAALALMTVLSVVIGIIFHSVPSQFQTTLPIGEYAAVTLLMFFGLKSIKDAWDLPSKEVKSG  232 (347)
Q Consensus       153 ia~lLA~Ry~~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~lP~~~~~~l~~~~~~aa~lFl~FGl~~l~~~w~L~~~~~~~g  232 (347)
                      +++.-..-|+.+.-+.|+.+++++.-.++..+|..+..+|-+++      ++.++++++.||.+-+|.+-.-..+..+-+
T Consensus        23 Ia~avg~~~~wr~al~ga~lglalvl~l~lvlGk~L~lvPln~l------qiv~gvLLllFG~rw~Rsavrr~ag~rkg~   96 (236)
T COG4280          23 IAAAVGNIYKWRLALIGAVLGLALVLILTLVLGKLLYLVPLNYL------QIVSGVLLLLFGYRWIRSAVRRFAGIRKGG   96 (236)
T ss_pred             HHHhhhhhccccHHHHHHHHHHHHHHHHHHHHccceeeeechHH------HHHHHHHHHHHHHHHHHHHHHHHhchhccC
Confidence            33444445556668999999999999999999999998998887      788999999999988776532211111112


Q ss_pred             CCCcchhhhHHHHHHHHHHHhhccCCChhHHHHHHHHHHHHhhcCChhHHHHHHHhccc-CCceeehHHHHHHHHHHHHH
Q 019035          233 DKNGRELDELAEAEELVKEKLSKRLSNPLEIIWKSFSLVFFAEWGDRSMLATIALGAAQ-SPWGVASGAIAGHLLATSFA  311 (347)
Q Consensus       233 d~~~~e~~E~~Eaee~~~~k~s~~~~~~~~~fl~sF~liFLAE~GDKTQLaTiaLAa~~-~p~~V~~Ga~lal~l~t~lA  311 (347)
                      +||.  .||.     .+.++++.. .+ +-.++.+|-.+.+ | |=.-.++.++|.+.+ .+..-..|+..|..+.-.++
T Consensus        97 ~ee~--leE~-----~~ldq~e~g-~~-~la~l~~fk~v~L-e-glEv~~iVialgaa~sqwleAi~gagfA~vlvlvl~  165 (236)
T COG4280          97 GEEK--LEEG-----IVLDQEEEG-FS-KLALLVVFKVVAL-E-GLEVSLIVIALGAASSQWLEAIMGAGFASVLVLVLT  165 (236)
T ss_pred             chhh--Hhhh-----hhccccccc-ch-hhhHHHHhHHHHH-h-hheeeeeeeeechhhhHHHHHHHHHHHHHHHHHHHH
Confidence            2211  1111     010111111 01 2234555544332 1 223345566676665 45677889999999999999


Q ss_pred             HHHHHHhhhhccHHHHHHHHHHHHHHHHHHHH
Q 019035          312 VLGGAFLANYISEKLVGYIGGVLFLVFAVATF  343 (347)
Q Consensus       312 V~~G~~l~~~Ip~~~i~~~agvlFl~FGv~tL  343 (347)
                      .++-+.++ |+|+..+++.+|.+...||.+=+
T Consensus       166 ~~lh~pla-rvpe~~lKfvag~lL~sfGtfWl  196 (236)
T COG4280         166 AILHSPLA-RVPEPHLKFVAGALLFSFGTFWL  196 (236)
T ss_pred             HHhccHHh-hCCchhHHHHHHHHHHHhhHHHh
Confidence            88888885 69999999999999999987644

>PRK11469 hypothetical protein; Provisional

Probab=97.89  E-value=0.00094  Score=61.27  Aligned_cols=137  Identities=16%  Similarity=0.302  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHhhhhcCCchhhcccchhHHHHHHHHHHHHHHHhhhhhcCCCccccCCCCCcchhhhHHHHHHHHHHHhh
Q 019035          175 ALMTVLSVVIGIIFHSVPSQFQTTLPIGEYAAVTLLMFFGLKSIKDAWDLPSKEVKSGDKNGRELDELAEAEELVKEKLS  254 (347)
Q Consensus       175 ~l~t~LaV~~G~~l~~lP~~~~~~l~~~~~~aa~lFl~FGl~~l~~~w~L~~~~~~~gd~~~~e~~E~~Eaee~~~~k~s  254 (347)
                      .+|+.++-.+|+.+....+.+      +||++..++++.|++|+||.|.-.  ++    +  ++     +.+        
T Consensus        48 ~~m~~~g~~~G~~l~~~i~~~------~~~i~~~lL~~lG~~mi~e~~~~~--~~----~--~~-----~~~--------  100 (188)
T PRK11469         48 TLTPLIGWGMGMLASRFVLEW------NHWIAFVLLIFLGGRMIIEGFRGA--DD----E--DE-----EPR--------  100 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhcc--cc----c--cc-----ccc--------
Confidence            677788888888776533333      378999999999999999987411  11    0  00     000        


Q ss_pred             ccCCChhHHHHHHHHHHHHhhcCChhHHHHHHHhcc-cCCceeehHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHH
Q 019035          255 KRLSNPLEIIWKSFSLVFFAEWGDRSMLATIALGAA-QSPWGVASGAIAGHLLATSFAVLGGAFLANYISEKLVGYIGGV  333 (347)
Q Consensus       255 ~~~~~~~~~fl~sF~liFLAE~GDKTQLaTiaLAa~-~~p~~V~~Ga~lal~l~t~lAV~~G~~l~~~Ip~~~i~~~agv  333 (347)
                      ++ .+.++.+..+..+-.      ..--+-+.++.. .+++...+-.-+-.++++..++.+|+.+.+++ .++..+++|+
T Consensus       101 ~~-~~~~~~l~LaiAtSi------DAlavGi~~~~~g~~~~~~~~~ig~~s~~~~~~G~~lG~~~g~~~-g~~a~~lgG~  172 (188)
T PRK11469        101 RR-HGFWLLVTTAIATSL------DAMAVGVGLAFLQVNIIATALAIGCATLIMSTLGMMVGRFIGSII-GKKAEILGGL  172 (188)
T ss_pred             cC-CCHHHHHHHHHHHHH------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            00 012222222211110      000011112221 23333333333445566777777888777654 4678999999


Q ss_pred             HHHHHHHHHHHhc
Q 019035          334 LFLVFAVATFFGV  346 (347)
Q Consensus       334 lFl~FGv~tL~~~  346 (347)
                      +.++.|++++++.
T Consensus       173 iLI~iGi~il~~h  185 (188)
T PRK11469        173 VLIGIGVQILWTH  185 (188)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999875

>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine

Probab=97.65  E-value=0.0048  Score=54.64  Aligned_cols=176  Identities=16%  Similarity=0.191  Sum_probs=93.9

Q ss_pred             HHHHHHHHcccCchh---HHHHHHHHHHHHHHHHHHHHhhh-hcCCchhhcccchhHHHHHHHHHHHHHHHhhhhhcCCC
Q 019035          151 FFIAALLAMQYEKVL---VLLGSMAALALMTVLSVVIGIIF-HSVPSQFQTTLPIGEYAAVTLLMFFGLKSIKDAWDLPS  226 (347)
Q Consensus       151 Qlia~lLA~Ry~~~~---Vf~Ga~~Al~l~t~LaV~~G~~l-~~lP~~~~~~l~~~~~~aa~lFl~FGl~~l~~~w~L~~  226 (347)
                      .+.++--+++++++.   +.+|...+-.+...+++..-..+ ...|.-..    +-+++++..++++|.+++++....  
T Consensus        11 ~~~~i~~~~~~G~~~~~~~~~G~~~~~~i~~~~~~~g~~~l~~~~~~~~~----~l~~~G~~~L~~lg~~~~~~~~~~--   84 (191)
T PF01810_consen   11 NLLVISNGLRKGFKAGLPVALGAALGDLIYILLAVFGLSALLKSSPWLFM----ILKLLGALYLLYLGYKLLRSKFSS--   84 (191)
T ss_pred             HHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH----HHHHHHHHHHHHHHHHHHhcccCc--
Confidence            455666777888654   67788888888877776665554 33443221    236788888899999887642211  


Q ss_pred             ccccCCCCCcchhhhHHHHHHHHHHHhhccCCChh-HHHHHHHHHHHHhhcCChhHHHHHHHhcccCCceeehHHHHHHH
Q 019035          227 KEVKSGDKNGRELDELAEAEELVKEKLSKRLSNPL-EIIWKSFSLVFFAEWGDRSMLATIALGAAQSPWGVASGAIAGHL  305 (347)
Q Consensus       227 ~~~~~gd~~~~e~~E~~Eaee~~~~k~s~~~~~~~-~~fl~sF~liFLAE~GDKTQLaTiaLAa~~~p~~V~~Ga~lal~  305 (347)
                       +.   ++ +++ .+..+......+..--...||. -.++.++...|+.+--+.+|.....+.       +++|+...+.
T Consensus        85 -~~---~~-~~~-~~~~~~~~~f~~g~~~~~~NPk~il~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~w~~  151 (191)
T PF01810_consen   85 -KS---ST-QSE-AKKQSKSKSFLTGFLLNLLNPKAILFWLAVFPQFISPEYSSTQFLVFILG-------IFLGSLLWFL  151 (191)
T ss_pred             -ch---hh-hhh-hccccHHHHHHHHHHHHHHhHHHHHHHHHhhhcccCccccHHHHHHHHHH-------HHHHHHHHHH
Confidence             10   00 000 0000000000000000011232 246667777777764445555544432       3444444444


Q ss_pred             HHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHhc
Q 019035          306 LATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFFGV  346 (347)
Q Consensus       306 l~t~lAV~~G~~l~~~Ip~~~i~~~agvlFl~FGv~tL~~~  346 (347)
                      +....+....+.+.++- .+++++++|++|+++|++.++++
T Consensus       152 ~~~~~~~~~~~~~~~~~-~~~i~~~~g~~li~~av~l~~~g  191 (191)
T PF01810_consen  152 LLALLGSRLRRKFSSRR-IRWINRISGLLLIGFAVYLLYSG  191 (191)
T ss_pred             HHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHcC
Confidence            44444444444433221 23899999999999999999864

A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane

>TIGR02840 spore_YtaF putative sporulation protein YtaF

Probab=97.60  E-value=0.0031  Score=58.44  Aligned_cols=45  Identities=20%  Similarity=0.402  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHhhhhc-CCchhhcccchhHHHHHHHHHHHHHHHhhhhhc
Q 019035          173 ALALMTVLSVVIGIIFHS-VPSQFQTTLPIGEYAAVTLLMFFGLKSIKDAWD  223 (347)
Q Consensus       173 Al~l~t~LaV~~G~~l~~-lP~~~~~~l~~~~~~aa~lFl~FGl~~l~~~w~  223 (347)
                      ...+|+.++..+|+.+.. +|.++-      +|+++++++++|++|+++.+.
T Consensus        39 ~~~~~~~lg~~~G~~~~~~i~~~~~------~~ig~~iLi~iG~~mi~~~~~   84 (206)
T TIGR02840        39 ISGLFIFISMLLGKFLAKFLPPKVT------EILGAFILIAIGIWIIYNAFR   84 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHhchhhH------HHHHHHHHHHHHHHHHHHHHh
Confidence            345899999999998764 776543      789999999999999999875

This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.

>COG1971 Predicted membrane protein [Function unknown]

Probab=97.45  E-value=0.0042  Score=57.72  Aligned_cols=42  Identities=17%  Similarity=0.411  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHhcC
Q 019035          305 LLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFFGVF  347 (347)
Q Consensus       305 ~l~t~lAV~~G~~l~~~Ip~~~i~~~agvlFl~FGv~tL~~~f  347 (347)
                      ++.+.++...|+.+.+. =.++...++|++.+++|++.+++.+
T Consensus       147 ~il~~~G~~IG~~~g~~-~g~~ae~lgGiiLI~~G~~iL~~~~  188 (190)
T COG1971         147 LILSALGAIIGRKLGKF-LGKYAEILGGIILIGIGVKILLEHL  188 (190)
T ss_pred             HHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHhc
Confidence            34455555666666543 4578899999999999999999864

>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein

Probab=97.17  E-value=0.035  Score=50.80  Aligned_cols=164  Identities=16%  Similarity=0.300  Sum_probs=100.3

Q ss_pred             CchhHHHHHHHHc---ccCchhHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhcccchhHHHHHHHHHHHHHHHhhhhhc
Q 019035          147 GDKTFFIAALLAM---QYEKVLVLLGSMAALALMTVLSVVIGIIFHSVPSQFQTTLPIGEYAAVTLLMFFGLKSIKDAWD  223 (347)
Q Consensus       147 GDKTQlia~lLA~---Ry~~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~lP~~~~~~l~~~~~~aa~lFl~FGl~~l~~~w~  223 (347)
                      +|+=.+++++...   +++++..+.|...|+++-.++-.....+++..  .++      +++.++.+++.+.|++++-. 
T Consensus        12 ~DN~~vi~~~~~~lp~~~r~kal~~Gi~~A~~lR~~~i~~~~~ll~~~--~~i------~~igG~~Ll~~a~k~~~~~~-   82 (183)
T PF03741_consen   12 IDNAFVIAMIFRKLPPEQRRKALFWGIIGAIVLRIIFIFLASWLLSIF--PWI------LLIGGLFLLYIAIKLLHEER-   82 (183)
T ss_pred             hhHHHHHHHHHhCCCHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHHHH--HHH------HHHHHHHHHHHHHHHHHhcc-
Confidence            5666666655443   34456689999999977766666665565543  222      46677777777777765321 


Q ss_pred             CCCccccCCCCCcchhhhHHHHHHHHHHHhhccCCChhHHHHHHHHHHHHhhcCChh-----HHHHHHHhcccCCceeeh
Q 019035          224 LPSKEVKSGDKNGRELDELAEAEELVKEKLSKRLSNPLEIIWKSFSLVFFAEWGDRS-----MLATIALGAAQSPWGVAS  298 (347)
Q Consensus       224 L~~~~~~~gd~~~~e~~E~~Eaee~~~~k~s~~~~~~~~~fl~sF~liFLAE~GDKT-----QLaTiaLAa~~~p~~V~~  298 (347)
                           +  +|+++   ++.++.+        +..+.....++.+...+   |+=|=.     =++.++++  .+++.++.
T Consensus        83 -----~--~d~~~---~~~~~~~--------~~~~~~~~~~~~~v~~I---~~~DlvfSlDSV~a~~~it--~~~~iv~~  139 (183)
T PF03741_consen   83 -----D--EDPEN---AEVEEEK--------KFFPVSKSSLWLAVIQI---ELADLVFSLDSVLAAVGIT--DDFFIVIT  139 (183)
T ss_pred             -----c--cccch---hhhhhhh--------ccccchhHHHHHHHHHH---HHHHHHHHHhHHHHHHHHh--hhHHHHHH
Confidence                 1  11100   1111101        00111122345554443   444543     34555554  78899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHh
Q 019035          299 GAIAGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFFG  345 (347)
Q Consensus       299 Ga~lal~l~t~lAV~~G~~l~~~Ip~~~i~~~agvlFl~FGv~tL~~  345 (347)
                      |.+++...+-..+-.+.+++.++   .++++.++.+-...|+.++.+
T Consensus       140 g~i~si~~m~~~~~~~~~~l~~~---p~l~~~~~~~L~~ig~~li~~  183 (183)
T PF03741_consen  140 GNIISILLMRFLSFLLAKLLERF---PYLKYLAAAILGFIGVKLILE  183 (183)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhC
Confidence            99999999999999999998654   577888888888888887653

TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane

>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]

Probab=96.78  E-value=0.27  Score=45.36  Aligned_cols=181  Identities=14%  Similarity=0.155  Sum_probs=89.0

Q ss_pred             CchhHHHHHHHHcccCchh---HHHHHHHHHHHHHHHHHHH-HhhhhcCCchhhcccchhHHHHHHHHHHHHHHHhhhhh
Q 019035          147 GDKTFFIAALLAMQYEKVL---VLLGSMAALALMTVLSVVI-GIIFHSVPSQFQTTLPIGEYAAVTLLMFFGLKSIKDAW  222 (347)
Q Consensus       147 GDKTQlia~lLA~Ry~~~~---Vf~Ga~~Al~l~t~LaV~~-G~~l~~lP~~~~~~l~~~~~~aa~lFl~FGl~~l~~~w  222 (347)
                      ..=..+.++.-+++++++.   +.+|..++..+...+++.. +.++..-|.-..    +-+++.+.-++++|+++++...
T Consensus        20 PGP~~~~v~~~~~~~G~~~g~~~~~G~~~G~~v~~~l~~~Gl~all~~~~~~f~----~lk~~GaaYL~ylg~~~~ra~~   95 (208)
T COG1280          20 PGPDNLLVLARSLSRGRRAGLATALGIALGDLVHMLLAALGLAALLATSPALFT----VLKLAGAAYLLYLGWKALRAGG   95 (208)
T ss_pred             CCccHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHhccc
Confidence            4455566677778887654   6778888887776666553 445544443322    1257888888899998876532


Q ss_pred             cCCCccccCCCCCcchhhhHHHHHHHHHHHhhccCCCh-hHHHHHHHHHHHHhhcCC--hhHHHHHHHhcccCCceeehH
Q 019035          223 DLPSKEVKSGDKNGRELDELAEAEELVKEKLSKRLSNP-LEIIWKSFSLVFFAEWGD--RSMLATIALGAAQSPWGVASG  299 (347)
Q Consensus       223 ~L~~~~~~~gd~~~~e~~E~~Eaee~~~~k~s~~~~~~-~~~fl~sF~liFLAE~GD--KTQLaTiaLAa~~~p~~V~~G  299 (347)
                      ...++      + +++..+........ +..--...|| .-.|+.++.--|+..-.+  ..|+..+.+...      ++.
T Consensus        96 ~~~~~------~-~~~~~~~~~~~~f~-~G~~~~l~NPK~~lf~la~~pqfv~~~~~~~~~~~~~l~~~~~------~~~  161 (208)
T COG1280          96 AALAE------E-AAGAPSSSRRKAFR-RGLLVNLLNPKAILFFLAFLPQFVDPGAGLVLLQALILGLVFI------LVG  161 (208)
T ss_pred             ccccc------c-ccccccchhHHHHH-HHHHHHhhCcHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHH------HHH
Confidence            11111      0 00000000000000 0000011222 234555665555543332  344444333210      000


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHhc
Q 019035          300 AIAGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFFGV  346 (347)
Q Consensus       300 a~lal~l~t~lAV~~G~~l~~~Ip~~~i~~~agvlFl~FGv~tL~~~  346 (347)
                       ..-.......+...++++.+.--.|++++..|++|+.+|++++++.
T Consensus       162 -~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~G~~li~~g~~l~~~~  207 (208)
T COG1280         162 -FVVLALYALLAARLRRLLRRPRASRIINRLFGVLLIGFGVKLALSR  207 (208)
T ss_pred             -HHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence             0111111111223334443322378999999999999999998763

>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein

Probab=96.55  E-value=0.24  Score=43.78  Aligned_cols=65  Identities=17%  Similarity=0.374  Sum_probs=41.7

Q ss_pred             HHHHHHHcccCchh---HHHHHHHHHHHHHHHHHH-HHhhhhcCCchhhcccchhHHHHHHHHHHHHHHHhhh
Q 019035          152 FIAALLAMQYEKVL---VLLGSMAALALMTVLSVV-IGIIFHSVPSQFQTTLPIGEYAAVTLLMFFGLKSIKD  220 (347)
Q Consensus       152 lia~lLA~Ry~~~~---Vf~Ga~~Al~l~t~LaV~-~G~~l~~lP~~~~~~l~~~~~~aa~lFl~FGl~~l~~  220 (347)
                      ++++--+.+++++.   +.+|..++..+...+++. ++.++...|.-..    +-++++++.++++|.+++++
T Consensus         7 ~~~~~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~Gl~~l~~~~~~~~~----~l~~~Ga~yLl~lg~~~~~~   75 (185)
T TIGR00949         7 FVVMQTSLSSGRRAGVLTILGIALGDAIWIVLSLLGLAVLISKSVILFT----VIKWLGGAYLIYLGIKMLRK   75 (185)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHc
Confidence            34455555665433   677889998888777766 4445655554322    22567777788899987653

>TIGR03718 R_switched_Alx integral membrane protein, TerC family

Probab=96.27  E-value=0.058  Score=53.40  Aligned_cols=183  Identities=16%  Similarity=0.260  Sum_probs=105.7

Q ss_pred             HHHHHHhhhc---CchhHHHHHHHHc-----ccCchhHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhcccchhHHHHHH
Q 019035          137 AFSLIFVSEI---GDKTFFIAALLAM-----QYEKVLVLLGSMAALALMTVLSVVIGIIFHSVPSQFQTTLPIGEYAAVT  208 (347)
Q Consensus       137 sF~lIflAEi---GDKTQlia~lLA~-----Ry~~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~lP~~~~~~l~~~~~~aa~  208 (347)
                      .|....+-|.   +|+=+..+++++.     +++++..+.|+..|+++=.++-...-.+++.+|  |+      .++.++
T Consensus        64 ~f~tg~llE~~LSvDN~fV~~~if~~f~vP~~~q~rvL~~Gi~gAlvlR~i~i~~g~~Li~~f~--wi------~~ifG~  135 (302)
T TIGR03718        64 EFLTGYLIEKSLSVDNLFVFLLIFSYFAVPREYQHRVLFWGILGALVLRAIFIALGAALIEQFH--WV------LYIFGA  135 (302)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HH------HHHHHH
Confidence            4555555554   8999999998875     455566899999998766555444434554443  22      456666


Q ss_pred             HHHHHHHHHhhhhhcCCCccccCCCCCcchhhhHHHHHHHHHHH-------hhccC----CC--hhHHHHHHHHHHHHhh
Q 019035          209 LLMFFGLKSIKDAWDLPSKEVKSGDKNGRELDELAEAEELVKEK-------LSKRL----SN--PLEIIWKSFSLVFFAE  275 (347)
Q Consensus       209 lFl~FGl~~l~~~w~L~~~~~~~gd~~~~e~~E~~Eaee~~~~k-------~s~~~----~~--~~~~fl~sF~liFLAE  275 (347)
                      .+++-|.|++++      +++   |+ ++|.+   ..-...++.       +..++    .+  ...+++   ..+..-|
T Consensus       136 fLi~~a~k~~~~------~~~---~~-~~~~~---~~~~~~~~~~~v~~~~~g~~f~~~~~g~~~~tpl~---~vli~Ie  199 (302)
T TIGR03718       136 FLLYTGIKMLFE------GDE---ED-DPENN---PLVRLLRRVLPVTDKYHGDRFFVRENGKRYATPLF---LVLVLVE  199 (302)
T ss_pred             HHHHHHHHHHhh------ccc---cc-Ccccc---HHHHHHHhhcCCCccccCCceeeeecCceecCcHH---HHHHHHH
Confidence            666667766542      111   01 00000   000000000       00000    00  011233   3344456


Q ss_pred             cCChhHH---HHHHHhcccCCceeehHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHhc
Q 019035          276 WGDRSML---ATIALGAAQSPWGVASGAIAGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFFGV  346 (347)
Q Consensus       276 ~GDKTQL---aTiaLAa~~~p~~V~~Ga~lal~l~t~lAV~~G~~l~~~Ip~~~i~~~agvlFl~FGv~tL~~~  346 (347)
                      .=|-.+=   ...++|..++|+.|+.+.+.|.+..-.+.-++.+++.++   .++++.++++-...|+.++.+.
T Consensus       200 ~~DlvFslDSIpAi~aiT~d~~iV~tsnifaIlgLR~lyf~l~~ll~rf---~~L~~~~a~iL~fIGvkmll~~  270 (302)
T TIGR03718       200 TTDLIFAVDSIPAIFAITQDPFIVFTSNIFAILGLRSLYFLLAGLLERF---HYLKYGLAVILVFIGVKMLLHA  270 (302)
T ss_pred             HHHHHHhhccHHHHHHhhcCCeEEehHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHhh
Confidence            6665442   233445567899999999988887777776777777543   5788888888889999988764

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.

>PRK09304 arginine exporter protein; Provisional

Probab=96.12  E-value=1.1  Score=41.06  Aligned_cols=68  Identities=13%  Similarity=0.224  Sum_probs=42.4

Q ss_pred             hHHHHHHHHcccCchh-HHHHHHHHHHHHHHHHHHHHh-hhhcCCchhhcccchhHHHHHHHHHHHHHHHhhhh
Q 019035          150 TFFIAALLAMQYEKVL-VLLGSMAALALMTVLSVVIGI-IFHSVPSQFQTTLPIGEYAAVTLLMFFGLKSIKDA  221 (347)
Q Consensus       150 TQlia~lLA~Ry~~~~-Vf~Ga~~Al~l~t~LaV~~G~-~l~~lP~~~~~~l~~~~~~aa~lFl~FGl~~l~~~  221 (347)
                      ..+.++--+.++++.. ...|...+..+...+++..-. ++...|.-..    +-+++++.-++++|.+++|..
T Consensus        22 ~~~~v~~~~~~~~~~~~~~~Gi~~g~~~~~~la~~Gl~~Ll~~~p~~~~----~l~~~Ga~YLlyLg~~~~rs~   91 (207)
T PRK09304         22 QNAFVMNQGIRRQYHLMIALLCALSDLVLICAGIFGGSALLMQSPWLLA----LVTWGGVAFLLWYGFGAFKTA   91 (207)
T ss_pred             HHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHh
Confidence            3444444556655433 677888888777766554443 5555565432    225777777888999888753

>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]

Probab=96.04  E-value=0.13  Score=49.67  Aligned_cols=190  Identities=21%  Similarity=0.241  Sum_probs=107.0

Q ss_pred             hHHHHHHHHHhhhc---CchhHHHHHHHH---cccCchhHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhcccchhHHHH
Q 019035          133 GFTAAFSLIFVSEI---GDKTFFIAALLA---MQYEKVLVLLGSMAALALMTVLSVVIGIIFHSVPSQFQTTLPIGEYAA  206 (347)
Q Consensus       133 ~f~~sF~lIflAEi---GDKTQlia~lLA---~Ry~~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~lP~~~~~~l~~~~~~a  206 (347)
                      ....++...++-|.   +|+=.+++++..   -+++++..+.|...|+++=.++-. .|.++-.++....       +..
T Consensus        15 ~~~~~l~tl~~lE~vL~iDN~iviai~~~~Lp~~qr~ral~~Gl~~A~v~R~~ll~-~~s~Ll~l~~~l~-------~~f   86 (254)
T COG0861          15 AAWVALLTLILLEIVLGIDNAIVIAILASKLPPKQRKKALFIGLAGALVLRIILLA-SISWLLTLTQPLL-------YIF   86 (254)
T ss_pred             hHHHHHHHHHHHHHHHHhhHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHH-------HHH
Confidence            33456767777776   899888877532   344456689999999877665544 4444333332211       233


Q ss_pred             HHHHHHHHHHHhhhhhcCCCccccCCCCCcchhhhHHHHHHHHHHHhhccCCChhHHHHHHHHHHHHhh--cCChhHHHH
Q 019035          207 VTLLMFFGLKSIKDAWDLPSKEVKSGDKNGRELDELAEAEELVKEKLSKRLSNPLEIIWKSFSLVFFAE--WGDRSMLAT  284 (347)
Q Consensus       207 a~lFl~FGl~~l~~~w~L~~~~~~~gd~~~~e~~E~~Eaee~~~~k~s~~~~~~~~~fl~sF~liFLAE--~GDKTQLaT  284 (347)
                      +..++.-+++++++.-....       ++..|.-|..|.++... + .++  ....+||.+...+-++-  +.=-|=++.
T Consensus        87 g~~L~~~~~~ll~~~~~~~~-------k~~~~~~~~~~~~~~~~-~-~~~--~~~~~f~~ai~~I~i~D~vFSlDSV~Aa  155 (254)
T COG0861          87 GLYLLWRDIKLLLGGLFLLF-------KATKELHERLEGEEFFV-N-GKL--KKATPFWGAIIQIELADLVFSLDSVIAA  155 (254)
T ss_pred             HHHHHHHHHHHHhcchhHHH-------HHHHHHhhhhccccccc-c-ccc--cccCcHHHHHHHHHHHHHHHhhhHHHHH
Confidence            45555556665543111100       00001111111111000 0 000  01234566655554432  122344566


Q ss_pred             HHHhcccCCceeehHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHhc
Q 019035          285 IALGAAQSPWGVASGAIAGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFFGV  346 (347)
Q Consensus       285 iaLAa~~~p~~V~~Ga~lal~l~t~lAV~~G~~l~~~Ip~~~i~~~agvlFl~FGv~tL~~~  346 (347)
                      ++++  .+|+.|+.|.+.|...+-..+=.+.+++-++   .++.+.+..+-+..|+.++.++
T Consensus       156 ~g~~--~~~~im~~a~i~aI~~m~~aa~~l~~ll~r~---p~l~~~~~~iL~~IG~kli~~~  212 (254)
T COG0861         156 VGMA--GHPFVMVTAVIFAILVMRFAAFLLARLLERH---PTLKYLALVILLFIGVKLILEG  212 (254)
T ss_pred             HHHh--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHc---hHHHHHHHHHHHHHHHHHHHhh
Confidence            6555  6789999999999999999998888888654   4677777777788888887765

>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family

Probab=95.69  E-value=0.57  Score=44.33  Aligned_cols=158  Identities=18%  Similarity=0.284  Sum_probs=95.1

Q ss_pred             CchhHHHHHHHH---cccCchhHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhcccchhHHHHHHHHHHHHHHHhhhhhc
Q 019035          147 GDKTFFIAALLA---MQYEKVLVLLGSMAALALMTVLSVVIGIIFHSVPSQFQTTLPIGEYAAVTLLMFFGLKSIKDAWD  223 (347)
Q Consensus       147 GDKTQlia~lLA---~Ry~~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~lP~~~~~~l~~~~~~aa~lFl~FGl~~l~~~w~  223 (347)
                      +|+-.+++++..   .+++++..+.|...|.++=-++-.....+++ +|  ++      +++.++.+++.+.|++++   
T Consensus         9 ~DN~~via~~~~~LP~~~r~~al~~Gi~gAivlR~i~i~~~~~Ll~-~~--~l------~~iGG~~Ll~~~~k~l~~---   76 (215)
T TIGR03716         9 ADNALVLAVMVKHLPEKQRKKALFYGLIGAYVFRFIALFLASFLIK-FW--WI------KAIGALYLLYLAIKHFRK---   76 (215)
T ss_pred             hhHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH--HH------HHHHHHHHHHHHHHHHHh---
Confidence            455555555433   3345566899999999877666655555554 33  33      456666666667766642   


Q ss_pred             CCCccccCCCCCcchhhhHHHHHHHHHHHhhccCCChhHHHHHHHHHHHHhhcCChhH-----HHHHHHhcccCCceeeh
Q 019035          224 LPSKEVKSGDKNGRELDELAEAEELVKEKLSKRLSNPLEIIWKSFSLVFFAEWGDRSM-----LATIALGAAQSPWGVAS  298 (347)
Q Consensus       224 L~~~~~~~gd~~~~e~~E~~Eaee~~~~k~s~~~~~~~~~fl~sF~liFLAE~GDKTQ-----LaTiaLAa~~~p~~V~~  298 (347)
                         +++  +++ +   ++    ++   +  .++    -+.|+.+..   .-|.=|=.+     ++.+++  ..+++.++.
T Consensus        77 ---~~~--~~~-~---~~----~~---~--~~~----~~~f~~av~---~I~~~DlvFSlDSV~A~~gi--t~~~~ii~~  129 (215)
T TIGR03716        77 ---KKK--GKE-D---EE----AE---K--KKA----HSGFWRTVL---KVELMDIAFSVDSILAAVAL--SGQFWVVFL  129 (215)
T ss_pred             ---ccc--ccc-c---cc----cc---c--ccc----cchHHHHHH---HHHHHHHHHHhhhHHHHHHh--ccChHHHHH
Confidence               111  000 0   00    00   0  011    012444433   334444433     344443  478999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHhc
Q 019035          299 GAIAGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFFGV  346 (347)
Q Consensus       299 Ga~lal~l~t~lAV~~G~~l~~~Ip~~~i~~~agvlFl~FGv~tL~~~  346 (347)
                      |.+++...+-..+-.+.+++.++   .++++.++.+-...|+.++.++
T Consensus       130 g~~~sIl~lr~~s~~l~~li~r~---p~L~~~~~~iL~~ig~kLil~~  174 (215)
T TIGR03716       130 GGIIGILIMRFAATIFVKLLERF---PELETAAFLLIGWIGVKLLLET  174 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999888888888654   5677888888888898888753

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.

>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family

Probab=95.65  E-value=0.06  Score=50.00  Aligned_cols=152  Identities=13%  Similarity=0.178  Sum_probs=85.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhcccchhHHHHHHHHHHHHHHHhhhhhcCCCccccCCCCCcchhhhH
Q 019035          163 KVLVLLGSMAALALMTVLSVVIGIIFHSVPSQFQTTLPIGEYAAVTLLMFFGLKSIKDAWDLPSKEVKSGDKNGRELDEL  242 (347)
Q Consensus       163 ~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~lP~~~~~~l~~~~~~aa~lFl~FGl~~l~~~w~L~~~~~~~gd~~~~e~~E~  242 (347)
                      ++.|++|=.+++.+.-+.|...+..+..+|++|+.      -.-+.+=+++|+|.+   |.-+   +   || +++    
T Consensus        25 ~~~I~~GqylG~~~Lv~~Sl~~~~~l~~ip~~wiL------GlLGliPI~lGi~~l---~~~~---~---~~-e~~----   84 (191)
T PF03596_consen   25 RRQIVIGQYLGFTILVLASLLGAFGLLFIPPEWIL------GLLGLIPIYLGIKAL---FSGE---D---DD-EEE----   84 (191)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHhCCHHHHH------HHHHHHHHHHHHHHH---HcCC---C---cc-ccc----
Confidence            45699999999999999999999888889998862      123445556787643   3211   1   11 000    


Q ss_pred             HHHHHHHHHHhhccCCChhHHHHHHHHHHHHhhcCChhHHHHHHHhcccCCceeehHHHHHHHHHHHHHHHHHHHhhhhc
Q 019035          243 AEAEELVKEKLSKRLSNPLEIIWKSFSLVFFAEWGDRSMLATIALGAAQSPWGVASGAIAGHLLATSFAVLGGAFLANYI  322 (347)
Q Consensus       243 ~Eaee~~~~k~s~~~~~~~~~fl~sF~liFLAE~GDKTQLaTiaLAa~~~p~~V~~Ga~lal~l~t~lAV~~G~~l~~~I  322 (347)
                        .++..+   .++.++   .+++. ..+.+|-=||+==+=+=.+|+..  +.-+.-..+-..++.++-+++++.+++.=
T Consensus        85 --~~~~~~---~~~~~~---~i~~V-a~iTiAnGgDNigIYiP~Fa~~s--~~~l~v~l~vF~ilv~v~c~la~~l~~~p  153 (191)
T PF03596_consen   85 --AEEKLN---SPKSNS---LILTV-AAITIANGGDNIGIYIPLFASLS--LAELIVILIVFLILVGVWCFLAYKLARIP  153 (191)
T ss_pred             --cccccc---cccccc---hhHHh-hhhhhhcCCCeEEEeehhhhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHhCCh
Confidence              011000   111111   12322 22323335554222222222211  11222344455667777888888886532


Q ss_pred             -----cHHHHHHHHHHHHHHHHHHHHHh
Q 019035          323 -----SEKLVGYIGGVLFLVFAVATFFG  345 (347)
Q Consensus       323 -----p~~~i~~~agvlFl~FGv~tL~~  345 (347)
                           =+|+=+++.-++|+..|++.++|
T Consensus       154 ~i~~~leryg~~l~p~v~I~LGi~Il~e  181 (191)
T PF03596_consen  154 IIAEFLERYGRWLVPIVYIGLGIYILIE  181 (191)
T ss_pred             HHHHHHHHhcccHHHHHHHHhCceeeEe
Confidence                 26777899999999999998775

To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.

>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family

Probab=95.54  E-value=0.79  Score=41.83  Aligned_cols=153  Identities=20%  Similarity=0.268  Sum_probs=94.6

Q ss_pred             CchhHHHHHHHHcccC----chhHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhcccchhHHHHHHHHHHHHHHHhhhhh
Q 019035          147 GDKTFFIAALLAMQYE----KVLVLLGSMAALALMTVLSVVIGIIFHSVPSQFQTTLPIGEYAAVTLLMFFGLKSIKDAW  222 (347)
Q Consensus       147 GDKTQlia~lLA~Ry~----~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~lP~~~~~~l~~~~~~aa~lFl~FGl~~l~~~w  222 (347)
                      +|+=.++++. +.+.+    ++..+.|...|+++..+.......+++ +  .+.      +++.++++++.|++|+++  
T Consensus        14 ~DN~~vi~~~-t~~lp~~~r~~~~~~G~~~A~vlr~if~~~G~~ll~-~--~~~------~iaGGllLl~ia~~ml~~--   81 (176)
T TIGR03717        14 GDNAVVIALA-ARNLPAHQRKKAIFWGTAGAIVLRILLTAVAVYLLA-I--PFL------KLIGGLLLLWIGWKLLLE--   81 (176)
T ss_pred             HHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h--HHH------HHHHHHHHHHHHHHHHhc--
Confidence            6787777773 44433    344788999999888877766666665 3  222      577888888888888652  


Q ss_pred             cCCCccccCCCCCcchhhhHHHHHHHHHHHhhccCCChhHHHHHHHHHHHHhhcCChhH-----HHHHHHhcccCCceee
Q 019035          223 DLPSKEVKSGDKNGRELDELAEAEELVKEKLSKRLSNPLEIIWKSFSLVFFAEWGDRSM-----LATIALGAAQSPWGVA  297 (347)
Q Consensus       223 ~L~~~~~~~gd~~~~e~~E~~Eaee~~~~k~s~~~~~~~~~fl~sF~liFLAE~GDKTQ-----LaTiaLAa~~~p~~V~  297 (347)
                          +.+   ++   + .     +       .++    ..+|+.+...+   |+=|=.+     ++.++ .++.+.+.++
T Consensus        82 ----~~~---~~---~-~-----~-------~~~----~~~~~~~v~~I---~~~D~~fS~DsV~a~~~-~~~~~~~li~  130 (176)
T TIGR03717        82 ----EEE---EQ---G-G-----D-------VKG----STTLWAAIKTI---VIADAVMSLDNVLAVAG-AAHGHLGLLI  130 (176)
T ss_pred             ----ccc---cc---c-c-----c-------ccc----cCcHHHHHHHH---HHHHHHHHHHHHHHHHH-HhcCCchHHH
Confidence                100   00   0 0     0       001    11234443333   3334333     22223 2345788899


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHh
Q 019035          298 SGAIAGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFFG  345 (347)
Q Consensus       298 ~Ga~lal~l~t~lAV~~G~~l~~~Ip~~~i~~~agvlFl~FGv~tL~~  345 (347)
                      .|.+++..++-..+-.+.+++.++   .++++.++..-...|+.++++
T Consensus       131 ~g~~i~i~~m~~~s~~~~~~~~~~---p~l~~~~~~~L~~ig~kl~~~  175 (176)
T TIGR03717       131 FGLLLSIPIIVWGSTLILKLMDRF---PWIIYIGAALLGYVAGEMIVT  175 (176)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcC
Confidence            999999988888888888877554   577778887777888887653

Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.

>PRK10229 threonine efflux system; Provisional

Probab=95.41  E-value=2  Score=38.88  Aligned_cols=70  Identities=13%  Similarity=0.150  Sum_probs=47.1

Q ss_pred             CchhHHHHHHHHcccCchh---HHHHHHHHHHHHHHHHHHHHh-hhhcCCchhhcccchhHHHHHHHHHHHHHHHhhh
Q 019035          147 GDKTFFIAALLAMQYEKVL---VLLGSMAALALMTVLSVVIGI-IFHSVPSQFQTTLPIGEYAAVTLLMFFGLKSIKD  220 (347)
Q Consensus       147 GDKTQlia~lLA~Ry~~~~---Vf~Ga~~Al~l~t~LaV~~G~-~l~~lP~~~~~~l~~~~~~aa~lFl~FGl~~l~~  220 (347)
                      ..=..+.++--+.+|+++.   ..+|...|..+...+++..-. ++...|.-..    +-++++++.++++|.+++|+
T Consensus        19 PGP~~~~vi~~~~~~G~~~~~~~~~G~~~g~~i~~~l~~~Gl~~ll~~~p~~~~----~l~~~Ga~yLlylg~~~~~~   92 (206)
T PRK10229         19 PGPDFFFVSQTAVSRSRKEAMMGVLGITCGVMVWAGVALLGLHLILEKMAWLHT----IIMVGGGLYLCWMGYQMLRG   92 (206)
T ss_pred             CCchhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHh
Confidence            3346777777888887654   467888888887776655544 4555554321    22577788888899988765

>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional

Probab=95.35  E-value=1.9  Score=39.03  Aligned_cols=71  Identities=15%  Similarity=0.144  Sum_probs=47.5

Q ss_pred             cCchhHHHHHHHHcccCchh---HHHHHHHHHHHHHHHHHHHHh-hhhcCCchhhcccchhHHHHHHHHHHHHHHHhhh
Q 019035          146 IGDKTFFIAALLAMQYEKVL---VLLGSMAALALMTVLSVVIGI-IFHSVPSQFQTTLPIGEYAAVTLLMFFGLKSIKD  220 (347)
Q Consensus       146 iGDKTQlia~lLA~Ry~~~~---Vf~Ga~~Al~l~t~LaV~~G~-~l~~lP~~~~~~l~~~~~~aa~lFl~FGl~~l~~  220 (347)
                      -..=..+.++--+++++++.   ..+|...+..+...+++..-. ++...|....    +-+++++.-++++|.+++|.
T Consensus        19 sPGP~~~~v~~~~~~~G~r~~~~~~~G~~~g~~v~~~~~~~Gl~~l~~~~p~~~~----~lk~~Ga~YL~~lg~~~~~s   93 (205)
T PRK10520         19 SPGSGAINTMSTSISHGYRGAVASIAGLQTGLAIHIVLVGVGLGALFSQSLLAFE----VLKWAGAAYLIWLGIQQWRA   93 (205)
T ss_pred             CCchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHhC
Confidence            34555666777777777554   567999998888776654444 5555554432    22677888888899988764

>PRK10958 leucine export protein LeuE; Provisional

Probab=95.20  E-value=2.5  Score=38.88  Aligned_cols=69  Identities=16%  Similarity=0.303  Sum_probs=43.8

Q ss_pred             hhHHHHHHHHcccCchh---HHHHHHHHHHHHHHHHHH-HHhhhhcCCchhhcccchhHHHHHHHHHHHHHHHhhhh
Q 019035          149 KTFFIAALLAMQYEKVL---VLLGSMAALALMTVLSVV-IGIIFHSVPSQFQTTLPIGEYAAVTLLMFFGLKSIKDA  221 (347)
Q Consensus       149 KTQlia~lLA~Ry~~~~---Vf~Ga~~Al~l~t~LaV~-~G~~l~~lP~~~~~~l~~~~~~aa~lFl~FGl~~l~~~  221 (347)
                      =..+..+--+.+++++.   ..+|..++..+...+++. ++.++...|.-..    +-++++++-++++|.+++|+.
T Consensus        26 P~~~~v~~~~~~~G~r~~~~~~~G~~~g~~~~~~~~~~G~~~l~~~~p~~~~----~l~~~G~~yL~~la~~~~~~~   98 (212)
T PRK10958         26 PNSLYVLSTAARRGVKAGYRAACGVFIGDAVLMFLAAAGVASLLKATPLLFN----VVKYLGAAYLLYLGVKMLRAA   98 (212)
T ss_pred             hHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHhh
Confidence            33444555666666543   577888888777666664 4445555554332    226777888888999888753

>TIGR00145 FTR1 family protein

Probab=94.98  E-value=2.1  Score=41.96  Aligned_cols=159  Identities=18%  Similarity=0.174  Sum_probs=85.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhhhcCCchh----hcccchhHHHHHHHHHHHHHHHhhhhhcCCCccccCCCCCcch
Q 019035          163 KVLVLLGSMAALALMTVLSVVIGIIFHSVPSQF----QTTLPIGEYAAVTLLMFFGLKSIKDAWDLPSKEVKSGDKNGRE  238 (347)
Q Consensus       163 ~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~lP~~~----~~~l~~~~~~aa~lFl~FGl~~l~~~w~L~~~~~~~gd~~~~e  238 (347)
                      +++|+.|+.+|+++.-++++++-.....++...    ...  +.-++|+++....+++|.+..-.+++           +
T Consensus        38 ~~~V~~G~~~gl~~s~~~a~~~~~~~~~~~~~~~~el~eg--~~~lvAv~~l~~m~~Wm~~~~~~~~~-----------~  104 (283)
T TIGR00145        38 RGWVWVGVLAGFAACLAIGIGVIGAYGSLQKDEFKELLEG--IFGVIAVVMLSYMGLWMLRMQRKWRV-----------K  104 (283)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH-----------H
Confidence            568999999999988888887777655554322    211  11245666666667766543211110           1


Q ss_pred             hhhHHHHHHHHHHHhhccCCChhHHHHHHHHHHHHhhcCChhHHHHHHHhcccCCceeehHHHHHHHHHHHHHHHHHHHh
Q 019035          239 LDELAEAEELVKEKLSKRLSNPLEIIWKSFSLVFFAEWGDRSMLATIALGAAQSPWGVASGAIAGHLLATSFAVLGGAFL  318 (347)
Q Consensus       239 ~~E~~Eaee~~~~k~s~~~~~~~~~fl~sF~liFLAE~GDKTQLaTiaLAa~~~p~~V~~Ga~lal~l~t~lAV~~G~~l  318 (347)
                      .+   .   ..++..+++ .+.+..++.+|+.++ =| |=-|=+--.+++...+...+..|.++|+++..+++.++=+.-
T Consensus       105 i~---~---~~~~al~~~-~~~~al~~l~flaV~-RE-G~EtVlF~~g~~~~~~~~~~~gg~~~Gl~~~~~~g~li~~~~  175 (283)
T TIGR00145       105 IE---R---QLVQALKRK-RSGWAIALIAFIAVV-RE-GLETVLFLAGFQQGSHATAYIGPAVAGLIVAVVVGVLLYRGG  175 (283)
T ss_pred             HH---H---HHHHHHhcC-cchhHHHHHHHHHHH-Hh-hhHHHHhHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11   1   111111111 134555666665443 00 111111111111112222233358888887777777765554


Q ss_pred             hhhccHHHHHHHHHHHHHHHHHHHHH
Q 019035          319 ANYISEKLVGYIGGVLFLVFAVATFF  344 (347)
Q Consensus       319 ~~~Ip~~~i~~~agvlFl~FGv~tL~  344 (347)
                       .|+|.+..-.+.+++-++++..++-
T Consensus       176 -~~i~l~~FF~~t~~lL~llAagl~~  200 (283)
T TIGR00145       176 -SRLSLKIFFILSSSLLLFIAAGLLG  200 (283)
T ss_pred             -hhCCHHHHHHHHHHHHHHHHHHHHH
Confidence             7899999988888887777776654

A characterized member from yeast acts as oxidase-coupled high affinity iron transporter. Note that the apparent member from E. coli K12-MG1655 has a frameshift by homology with member sequences from other species.

>PRK10323 cysteine/O-acetylserine exporter; Provisional

Probab=94.20  E-value=4.2  Score=36.87  Aligned_cols=71  Identities=14%  Similarity=0.124  Sum_probs=46.8

Q ss_pred             cCchhHHHHHHHHcccCchh---HHHHHHHHHHHHHHHHHHHHhh-hhcCCchhhcccchhHHHHHHHHHHHHHHHhhh
Q 019035          146 IGDKTFFIAALLAMQYEKVL---VLLGSMAALALMTVLSVVIGII-FHSVPSQFQTTLPIGEYAAVTLLMFFGLKSIKD  220 (347)
Q Consensus       146 iGDKTQlia~lLA~Ry~~~~---Vf~Ga~~Al~l~t~LaV~~G~~-l~~lP~~~~~~l~~~~~~aa~lFl~FGl~~l~~  220 (347)
                      ...=+.++.+.-+++++++.   ..+|...+..+...+++..... +...|.-..    +-+++++.-++++|.|++|.
T Consensus        19 sPGP~~~~v~~~~~~~G~r~a~~~~~G~~~g~~~~~~~~~~g~~~l~~~~p~~~~----vlk~~Ga~YLlyLg~~~~~s   93 (195)
T PRK10323         19 TPGPNNILALSSATSHGFRQSTRVLAGMSLGFLIVMLLCAGISFSLAVIDPAAVH----LLSWAGAAYIVWLAWKIATS   93 (195)
T ss_pred             CCChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhc
Confidence            45556667777777777543   6889999999987666644433 344454332    22567777778889988763

>TIGR02840 spore_YtaF putative sporulation protein YtaF

Probab=94.16  E-value=0.09  Score=48.85  Aligned_cols=53  Identities=17%  Similarity=0.266  Sum_probs=44.8

Q ss_pred             eeehHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHhcC
Q 019035          295 GVASGAIAGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFFGVF  347 (347)
Q Consensus       295 ~V~~Ga~lal~l~t~lAV~~G~~l~~~Ip~~~i~~~agvlFl~FGv~tL~~~f  347 (347)
                      ...+-..+-+.+++.++.++|+.+.+++|.++-+++++++++++|+++++++|
T Consensus        31 ~~~l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~~~~   83 (206)
T TIGR02840        31 LSNLIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIYNAF   83 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444556899999999999999999999999999999999999999864

This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.

>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC

Probab=94.07  E-value=0.85  Score=42.34  Aligned_cols=64  Identities=17%  Similarity=0.110  Sum_probs=45.3

Q ss_pred             HHHHHhcccCC---ceeehHHHHHHHHHHHHHHHHHHHhhhhcc---HHHHHHHHHHHHHHHHHHHHHhc
Q 019035          283 ATIALGAAQSP---WGVASGAIAGHLLATSFAVLGGAFLANYIS---EKLVGYIGGVLFLVFAVATFFGV  346 (347)
Q Consensus       283 aTiaLAa~~~p---~~V~~Ga~lal~l~t~lAV~~G~~l~~~Ip---~~~i~~~agvlFl~FGv~tL~~~  346 (347)
                      +++.++++++.   ..+.+++++...+.+.+.-..++++.+++.   .+.+.++.|++-..+|+-+++++
T Consensus       129 ~vi~~~~~~~~~~~~~~~~~ai~~~~~~~~l~l~~a~~i~~~lG~~g~~vi~Ri~Glil~aiavq~i~~G  198 (203)
T PF01914_consen  129 TVIVLSAEAGSLQSLLIVLIAILLVALITYLILRFADKIMRRLGKTGLQVITRIMGLILAAIAVQMILSG  198 (203)
T ss_pred             HHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555442   345566666777777777778888887775   45778889999999999887764

These proteins may be transporters. ; GO: 0016021 integral to membrane

>COG0730 Predicted permeases [General function prediction only]

Probab=93.84  E-value=5.7  Score=37.09  Aligned_cols=44  Identities=18%  Similarity=0.178  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHhc
Q 019035          303 GHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFFGV  346 (347)
Q Consensus       303 al~l~t~lAV~~G~~l~~~Ip~~~i~~~agvlFl~FGv~tL~~~  346 (347)
                      .+.+.+.++...|.++.+++|++.++.+-+.+.++.++.++++.
T Consensus       211 ~l~~g~~~G~~lG~~l~~~~~~~~lr~~~~~~~~~~~~~~~~~~  254 (258)
T COG0730         211 LLAVGSILGAYLGARLARRLSPKVLRRLFALVLLAVAIKLLLRG  254 (258)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            78889999999999999999999999999999999999988764

>PRK10019 nickel/cobalt efflux protein RcnA; Provisional

Probab=93.65  E-value=6.2  Score=38.85  Aligned_cols=72  Identities=15%  Similarity=0.033  Sum_probs=53.0

Q ss_pred             HHHHHHhhcCChhHHHHHHHhcccCCceeehHHHHHHHHHHHHHHHHHHHhhhhc--cHHHHH---HHHHHHHHHHHHHH
Q 019035          268 FSLVFFAEWGDRSMLATIALGAAQSPWGVASGAIAGHLLATSFAVLGGAFLANYI--SEKLVG---YIGGVLFLVFAVAT  342 (347)
Q Consensus       268 F~liFLAE~GDKTQLaTiaLAa~~~p~~V~~Ga~lal~l~t~lAV~~G~~l~~~I--p~~~i~---~~agvlFl~FGv~t  342 (347)
                      +++.|..-+|+=+.=...+++.       -+|.++.+.+...+++...+...++.  ..++++   ++++++=+++|+++
T Consensus       197 ~VLL~a~~lg~~~~Gi~~vlaf-------slGtaltm~~vgll~~~~~r~~~~~~~~~~~~~~~~p~~s~~l~i~~G~~~  269 (279)
T PRK10019        197 TVLLICIQLKALTLGATLVLSF-------SIGLALTLVTVGVGAAISVQQAAKRWSGFNTLARRAPYFSSLLIGLVGVYM  269 (279)
T ss_pred             HHHHHHHHhchHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4466666777766655555543       36888888888888877677666666  456667   99999999999999


Q ss_pred             HHhc
Q 019035          343 FFGV  346 (347)
Q Consensus       343 L~~~  346 (347)
                      .|+.
T Consensus       270 ~~~~  273 (279)
T PRK10019        270 GVHG  273 (279)
T ss_pred             HHHH
Confidence            8864

>COG4280 Predicted membrane protein [Function unknown]

Probab=93.18  E-value=0.27  Score=46.74  Aligned_cols=79  Identities=19%  Similarity=0.213  Sum_probs=61.5

Q ss_pred             hHHHHHHHHHHHHhhcCChhHHHHHHHhcc--cCCceeehHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHH
Q 019035          261 LEIIWKSFSLVFFAEWGDRSMLATIALGAA--QSPWGVASGAIAGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVF  338 (347)
Q Consensus       261 ~~~fl~sF~liFLAE~GDKTQLaTiaLAa~--~~p~~V~~Ga~lal~l~t~lAV~~G~~l~~~Ip~~~i~~~agvlFl~F  338 (347)
                      ++.|+.+|...++ |   -+-..+++.+-.  |++..-+.|+.+|+++.-.++..+|+.+ ..+|.+++++++|++.+.|
T Consensus         3 wsi~lAAl~sSlv-E---lvEa~aIa~avg~~~~wr~al~ga~lglalvl~l~lvlGk~L-~lvPln~lqiv~gvLLllF   77 (236)
T COG4280           3 WSIFLAALGSSLV-E---LVEAGAIAAAVGNIYKWRLALIGAVLGLALVLILTLVLGKLL-YLVPLNYLQIVSGVLLLLF   77 (236)
T ss_pred             HHHHHHHHHHHHH-H---HHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHccce-eeeechHHHHHHHHHHHHH
Confidence            3455555544332 2   345567777663  5778899999999999999999999999 5799999999999999999


Q ss_pred             HHHHHH
Q 019035          339 AVATFF  344 (347)
Q Consensus       339 Gv~tL~  344 (347)
                      |-.-..
T Consensus        78 G~rw~R   83 (236)
T COG4280          78 GYRWIR   83 (236)
T ss_pred             HHHHHH
Confidence            965444

>PF03239 FTR1: Iron permease FTR1 family; InterPro: IPR004923 The Saccharomyces cerevisiae (Baker's yeast) iron permease FTR1 is a plasma membrane permease for high-affinity iron uptake

Probab=92.83  E-value=1.9  Score=42.23  Aligned_cols=169  Identities=22%  Similarity=0.207  Sum_probs=92.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhhhcCCch-------hhcccchhHHHHHHHHHHHHHHHhhhhhcCCCccccCCCCC
Q 019035          163 KVLVLLGSMAALALMTVLSVVIGIIFHSVPSQ-------FQTTLPIGEYAAVTLLMFFGLKSIKDAWDLPSKEVKSGDKN  235 (347)
Q Consensus       163 ~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~lP~~-------~~~~l~~~~~~aa~lFl~FGl~~l~~~w~L~~~~~~~gd~~  235 (347)
                      +++|+.|+.+|++....+++.+-.+...++..       ....  .....+.++.....++|.+..-.+..+-+      
T Consensus        35 ~~~V~~G~~~g~~~s~~~~~~~~~~~~~~~~~~~~~~~e~~eg--~~~liA~~li~~m~~wm~~~~~~~~~~~~------  106 (306)
T PF03239_consen   35 RRWVWLGVAAGLVASLVIGAVFAVIFYTLSGDYWGISEELFEG--AISLIAVALITWMVFWMRRHGRKMKGEWE------  106 (306)
T ss_pred             hheeeecHhHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhchhHH------
Confidence            47899999999999888888887766555541       1100  00123444444445555442111111100      


Q ss_pred             cchhhhHHH-HHHHHH--HHhhccCCChhHHHHHHHHHHHHhhcCChhHHHHHHHhcccC--CceeehHHHHHHHHHHHH
Q 019035          236 GRELDELAE-AEELVK--EKLSKRLSNPLEIIWKSFSLVFFAEWGDRSMLATIALGAAQS--PWGVASGAIAGHLLATSF  310 (347)
Q Consensus       236 ~~e~~E~~E-aee~~~--~k~s~~~~~~~~~fl~sF~liFLAE~GDKTQLaTiaLAa~~~--p~~V~~Ga~lal~l~t~l  310 (347)
                       ++.+...+ .++..+  ++. .+..+.+..|+.+|+.+ +=| |=-|=+--.++.+..+  ...+..|+.+|.++..++
T Consensus       107 -~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~afl~v-lRE-G~E~vLfl~a~~~~~~~~~~~~~~g~~~G~~~a~~~  182 (306)
T PF03239_consen  107 -DKLAKALSSGSEDARASQKD-EGGGSKWALFLLAFLIV-LRE-GLEAVLFLAALAASLRKDAASILLGAILGIAAAVVL  182 (306)
T ss_pred             -HHHHHHHhhccchhhhhhhc-cccchhhHHHHHHHHHH-HHh-hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence             00000000 000000  011 11123455666666443 222 4445555555555433  577889999999999899


Q ss_pred             HHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHH
Q 019035          311 AVLGGAFLANYISEKLVGYIGGVLFLVFAVATFF  344 (347)
Q Consensus       311 AV~~G~~l~~~Ip~~~i~~~agvlFl~FGv~tL~  344 (347)
                      +.++-+.. .++|.+..-.+.+++-++.+..++.
T Consensus       183 ~~~~~~~~-~~i~~~~~f~~~~~~ll~~aa~L~~  215 (306)
T PF03239_consen  183 GWLLYRGL-IRISLRSFFIITGVLLLLIAAGLLG  215 (306)
T ss_pred             HHHHHHHH-HhcChHHHHHHHHHHHHHHHHHHHH
Confidence            88887765 5689988888887766666655554

Also included in this family are bacterial hypothetical integral membrane proteins.; GO: 0055085 transmembrane transport, 0016020 membrane

>PRK10995 inner membrane protein; Provisional

Probab=92.57  E-value=2.5  Score=39.54  Aligned_cols=37  Identities=8%  Similarity=0.138  Sum_probs=26.8

Q ss_pred             HHHHHHHHhhhhcc---HHHHHHHHHHHHHHHHHHHHHhc
Q 019035          310 FAVLGGAFLANYIS---EKLVGYIGGVLFLVFAVATFFGV  346 (347)
Q Consensus       310 lAV~~G~~l~~~Ip---~~~i~~~agvlFl~FGv~tL~~~  346 (347)
                      +....+..+.+++.   .+.++++.|++...+|+.+++++
T Consensus       173 l~l~~a~~l~~~LG~~gl~ii~Ri~GliL~aiavq~i~~G  212 (221)
T PRK10995        173 GSLRSSGAIMRLLGKGGIEAISRLMGFLLVCMGVQFIING  212 (221)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333555556664   45778899999999999998765

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=89.70  E-value=16  Score=39.02  Aligned_cols=153  Identities=11%  Similarity=0.105  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhc-CCchhhcccchhHHHHHHHHHHHHHHHhhhhhcCC-CccccCCCCCcchhhhHHH
Q 019035          167 LLGSMAALALMTVLSVVIGIIFHS-VPSQFQTTLPIGEYAAVTLLMFFGLKSIKDAWDLP-SKEVKSGDKNGRELDELAE  244 (347)
Q Consensus       167 f~Ga~~Al~l~t~LaV~~G~~l~~-lP~~~~~~l~~~~~~aa~lFl~FGl~~l~~~w~L~-~~~~~~gd~~~~e~~E~~E  244 (347)
                      .+|.++.+.+..+++..+|..++. +-..++      .+..+++|+++|+.|+ +.+.++ +..-          .+  .
T Consensus       216 ~lG~~~ty~~lG~~a~~~G~~~~~~~q~~~~------~~~~~~l~v~lgL~~~-G~~~l~lp~~~----------~~--~  276 (571)
T PRK00293        216 VQGMALTYTLLGLVVAAAGLQFQAALQHPYV------LIGLSILFVLLALSMF-GLFTLQLPSSL----------QT--R  276 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH------HHHHHHHHHHHHHHHh-cceeccCcHHH----------HH--H
Confidence            568888888888888888876542 211122      3466778888898775 333332 1000          00  0


Q ss_pred             HHHHHHHHhhccCCChhHHHHHHHHHHHHhhcCChh---HHHHHHHhcc-cCCce---eehHHHHHHHHHH-HHHHHHHH
Q 019035          245 AEELVKEKLSKRLSNPLEIIWKSFSLVFFAEWGDRS---MLATIALGAA-QSPWG---VASGAIAGHLLAT-SFAVLGGA  316 (347)
Q Consensus       245 aee~~~~k~s~~~~~~~~~fl~sF~liFLAE~GDKT---QLaTiaLAa~-~~p~~---V~~Ga~lal~l~t-~lAV~~G~  316 (347)
                      ... ..++  .+..+..++|+..++..++  ++--+   -.+.+++++. .+++.   ++..-.+|+.+-= +++...++
T Consensus       277 ~~~-~~~~--~~~~~~~gaf~~G~l~~l~--~~PC~~p~L~~~L~~aa~tg~~~~g~~~l~~~gLG~~~Plll~~~~~~~  351 (571)
T PRK00293        277 LTL-LSNR--QQGGSLGGVFVMGAISGLI--CSPCTTAPLSGALLYIAQSGDLLLGGLTLYLLALGMGLPLILITTFGNK  351 (571)
T ss_pred             hhh-hhhc--ccCCchHhHHHHHHHHHHH--hCCCchHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            000 0000  1112344566655544444  22333   2233444443 33321   2233333342222 22333333


Q ss_pred             HhhhhccH---HHHHHHHHHHHHHHHHHHHHh
Q 019035          317 FLANYISE---KLVGYIGGVLFLVFAVATFFG  345 (347)
Q Consensus       317 ~l~~~Ip~---~~i~~~agvlFl~FGv~tL~~  345 (347)
                      ++. + +-   +.++.+.|++.+++|+|+++.
T Consensus       352 ~lp-k-~g~wm~~~k~~~G~~ll~~~~~ll~~  381 (571)
T PRK00293        352 LLP-K-SGPWMNQVKTAFGFVLLALPVFLLER  381 (571)
T ss_pred             hcc-c-CccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            332 2 22   357889999999999998874

>PRK10621 hypothetical protein; Provisional

Probab=89.44  E-value=19  Score=34.03  Aligned_cols=47  Identities=15%  Similarity=0.041  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHhcC
Q 019035          301 IAGHLLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFFGVF  347 (347)
Q Consensus       301 ~lal~l~t~lAV~~G~~l~~~Ip~~~i~~~agvlFl~FGv~tL~~~f  347 (347)
                      .+.+...+.++...|..+.+++|++.++.+...+-++.|+.++++.|
T Consensus       209 ~l~l~~g~~~G~~lG~~l~~~~~~~~lr~~~~~ll~~~~i~~~~~~~  255 (266)
T PRK10621        209 GFVMLVGQFLGARLGARLVLSKGQKLIRPMIVIVSAVMSAKLLYDSH  255 (266)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCchHhHHHHHHHHHHHHHHHHHHHH
Confidence            34466778899999999999999999999999999999999988764

>TIGR00948 2a75 L-lysine exporter

Probab=89.23  E-value=15  Score=32.45  Aligned_cols=65  Identities=14%  Similarity=0.228  Sum_probs=42.5

Q ss_pred             HHHHHHcccCchh-HHHHHHHHHHHHHHHHHHHHh-hhhcCCchhhcccchhHHHHHHHHHHHHHHHhhhh
Q 019035          153 IAALLAMQYEKVL-VLLGSMAALALMTVLSVVIGI-IFHSVPSQFQTTLPIGEYAAVTLLMFFGLKSIKDA  221 (347)
Q Consensus       153 ia~lLA~Ry~~~~-Vf~Ga~~Al~l~t~LaV~~G~-~l~~lP~~~~~~l~~~~~~aa~lFl~FGl~~l~~~  221 (347)
                      ..+-.++++++-. ..+|...+..+...++++.-. ++...|.-..    .-++++++-++++|.+++|+.
T Consensus        11 ~vi~~~~~~~~g~~~~~G~~~g~~i~~~~~~~Gl~~ll~~~p~~~~----~l~~~Ga~YLlylg~~~~r~~   77 (177)
T TIGR00948        11 FVLRQGIRREHVLLIVALCCICDLVLIAAGVFGVAALLAASPILLA----VLTWGGALFLLWYGFLAAKTA   77 (177)
T ss_pred             HHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555543 788999998888776665554 4455554432    225677777788999998764

>PRK11469 hypothetical protein; Provisional

Probab=88.67  E-value=0.92  Score=41.79  Aligned_cols=42  Identities=17%  Similarity=0.195  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHhcC
Q 019035          305 LLATSFAVLGGAFLANYISEKLVGYIGGVLFLVFAVATFFGVF  347 (347)
Q Consensus       305 ~l~t~lAV~~G~~l~~~Ip~~~i~~~agvlFl~FGv~tL~~~f  347 (347)
                      .+++.++-..|+.+.+++|+ +-|++++++.++.|+||++|++
T Consensus        48 ~~m~~~g~~~G~~l~~~i~~-~~~~i~~~lL~~lG~~mi~e~~   89 (188)
T PRK11469         48 TLTPLIGWGMGMLASRFVLE-WNHWIAFVLLIFLGGRMIIEGF   89 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            77888999999999998777 6699999999999999999874

>PRK11111 hypothetical protein; Provisional

Probab=88.64  E-value=5.5  Score=37.54  Aligned_cols=47  Identities=17%  Similarity=0.207  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcc---HHHHHHHHHHHHHHHHHHHHHhc
Q 019035          300 AIAGHLLATSFAVLGGAFLANYIS---EKLVGYIGGVLFLVFAVATFFGV  346 (347)
Q Consensus       300 a~lal~l~t~lAV~~G~~l~~~Ip---~~~i~~~agvlFl~FGv~tL~~~  346 (347)
                      +.+...+.+.+....+.++.+++.   .+.+.++.|++-..+|+-++.++
T Consensus       155 ai~~~~~~~~l~l~~s~~i~r~LG~~G~~vi~RimGliL~aiaVq~i~~G  204 (214)
T PRK11111        155 AIALFALCCWLLFRMAPWLVRLLGQTGINVITRIMGLLLMALGIEFIVTG  204 (214)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444445555555666666664   56788899999999999887764

>COG4300 CadD Predicted permease, cadmium resistance protein [Inorganic ion transport and metabolism]

Probab=88.20  E-value=2.9  Score=39.41  Aligned_cols=41  Identities=17%  Similarity=0.237  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHhhhhcc-----HHHHHHHHHHHHHHHHHHHHHh
Q 019035          305 LLATSFAVLGGAFLANYIS-----EKLVGYIGGVLFLVFAVATFFG  345 (347)
Q Consensus       305 ~l~t~lAV~~G~~l~~~Ip-----~~~i~~~agvlFl~FGv~tL~~  345 (347)
                      .++-.+=+..++.+++.=|     +|+-|++-+++++..|++.+++
T Consensus       148 ~v~I~iL~~~a~~la~ip~I~evlEk~sr~i~~~V~I~LGlfIl~E  193 (205)
T COG4300         148 LVMIYILVFLAQKLAQIPPIGEVLEKYSRWIVAFVYIGLGLFILYE  193 (205)
T ss_pred             HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhheeEEe
Confidence            3444555677888876433     6888999999999999998775

>TIGR00427 membrane protein, MarC family

Probab=81.83  E-value=25  Score=32.73  Aligned_cols=48  Identities=25%  Similarity=0.159  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcc---HHHHHHHHHHHHHHHHHHHHHhc
Q 019035          299 GAIAGHLLATSFAVLGGAFLANYIS---EKLVGYIGGVLFLVFAVATFFGV  346 (347)
Q Consensus       299 Ga~lal~l~t~lAV~~G~~l~~~Ip---~~~i~~~agvlFl~FGv~tL~~~  346 (347)
                      .+++...+.+.+.-..++++.+++.   .+.+.++.|++-..+|+-+++++
T Consensus       150 ~ai~~~~~~~~~~l~~s~~l~~~LG~~g~~il~Ri~GliL~aIaVq~i~~G  200 (201)
T TIGR00427       150 LAIALVALITWLLFRYSAFIIRRLGRTGINVITRIMGLLLAAIAVEFIVTG  200 (201)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            3444455556666666777777774   56778999999999999988775

MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.

>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]

Probab=80.75  E-value=25  Score=33.11  Aligned_cols=167  Identities=20%  Similarity=0.232  Sum_probs=90.5

Q ss_pred             hcCchhHHHHHHHHc--ccCchhHHHHHHHHHHHHHHHHHHHHh-hhhc--CCchhhcccchhHHHHHHHHHHHHHHHhh
Q 019035          145 EIGDKTFFIAALLAM--QYEKVLVLLGSMAALALMTVLSVVIGI-IFHS--VPSQFQTTLPIGEYAAVTLLMFFGLKSIK  219 (347)
Q Consensus       145 EiGDKTQlia~lLA~--Ry~~~~Vf~Ga~~Al~l~t~LaV~~G~-~l~~--lP~~~~~~l~~~~~~aa~lFl~FGl~~l~  219 (347)
                      =+|-=.+|+++.=-.  +.+++.++-.+..|+.++-.. .++|. ++..  ++..-.      +++++++.+..|++|+.
T Consensus        20 P~G~ipvf~slt~~~~~~~r~~v~~ra~i~a~~ill~f-~~~G~~il~~fgIsi~a~------rIAGGilLf~ia~~ml~   92 (203)
T COG2095          20 PIGNLPVFISLTKGLSPEERNRVALRASIIALLILLVF-LLLGEGILRFFGISIDAF------RIAGGILLFLIALRMLF   92 (203)
T ss_pred             CCchhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCchhHH------HHhhhHHHHHHHHHHhc
Confidence            344444555443211  112233566777777666554 45555 4442  554443      56788888888998875


Q ss_pred             hhhcCCCccccCCCCCcchhhhHHHHHHHHHHHhhccCCChhHHHHHHHHHHHHhhcCChhHHHHHHHhcccC-Cceeeh
Q 019035          220 DAWDLPSKEVKSGDKNGRELDELAEAEELVKEKLSKRLSNPLEIIWKSFSLVFFAEWGDRSMLATIALGAAQS-PWGVAS  298 (347)
Q Consensus       220 ~~w~L~~~~~~~gd~~~~e~~E~~Eaee~~~~k~s~~~~~~~~~fl~sF~liFLAE~GDKTQLaTiaLAa~~~-p~~V~~  298 (347)
                      +-    .+..    +++.|.++  |+ +.    .--..--|             -=-|.-|-=+++.++.+++ ...+.+
T Consensus        93 ~~----~~~~----~~~~e~~~--~~-~i----aivPLA~P-------------liaGPg~Ist~i~~~~~~~~~~~~~~  144 (203)
T COG2095          93 GP----TSRP----KKKREEGQ--ED-SI----AIVPLAIP-------------LIAGPGTIATVIVLSSQYGNSKLAVV  144 (203)
T ss_pred             CC----cCcC----CCCcccCc--cC-Ce----eeecccCc-------------cccCcHHHHHHHHHHhccCcccHHHH
Confidence            31    1111    10100000  00 00    00000001             0125555556667777654 345666


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhc---cHHHHHHHHHHHHHHHHHHHHHhc
Q 019035          299 GAIAGHLLATSFAVLGGAFLANYI---SEKLVGYIGGVLFLVFAVATFFGV  346 (347)
Q Consensus       299 Ga~lal~l~t~lAV~~G~~l~~~I---p~~~i~~~agvlFl~FGv~tL~~~  346 (347)
                      ++++...+.+.+.-.....+.+++   ..+.+.++-|++-..+|+-+..++
T Consensus       145 ~~i~~~~~~~~~~l~~s~~i~r~lG~~G~~~~~RimGllL~al~vq~i~~G  195 (203)
T COG2095         145 LAILLASLLTYLILLSSSRIMRLLGKTGLNALTRIMGLLLAALGVQMILDG  195 (203)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666677777777777777766   466788899999999998887653

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	347
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 1e-05
 Identities = 59/340 (17%), Positives = 97/340 (28%), Gaps = 122/340 (35%)

Query: 1   MQNLAPHKPVI---------SRTKLPLLLAVDSLPSRASLLRRIP-----ISPSLRCREL 46
           +  L P K V+         +       +A+D   S   +  ++      ++        
Sbjct: 144 LLELRPAKNVLIDGVLGSGKT------WVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPE 196

Query: 47  SRLNLSHGKFIVQASNIGVGSGGHEGSNESENQKISGNSSEIQKAPSRIL----YPVSIA 102
           + L       ++Q     +       S+ S N K+      IQ    R+L    Y   + 
Sbjct: 197 TVLE------MLQKLLYQIDPNWTSRSDHSSNIKL--RIHSIQAELRRLLKSKPYENCL- 247

Query: 103 LVL-------------LGCGLVFSLIAFVKGGPTLVLAAIAKSGFTAAFSLIFVSEIGDK 149
           LVL             L C               L+         T             K
Sbjct: 248 LVLLNVQNAKAWNAFNLSC-------------KILLT--------TR-----------FK 275

Query: 150 TFFIAALLAMQYEKVLVLLGSMAALA---LMTVLSVVIGIIFHSVPSQFQTTLP-----I 201
              +   L+      + L      L    + ++L   +      +P +  TT P     I
Sbjct: 276 Q--VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333

Query: 202 GEYAAVTLLMFFGLKSIKDAWDLPSKEVKSGDK--NGRE--LDELAEAEELVKEKLSKRL 257
            E           ++     WD   K V   DK     E  L+ L  AE     K+  RL
Sbjct: 334 AES----------IRDGLATWD-NWKHVNC-DKLTTIIESSLNVLEPAEY---RKMFDRL 378

Query: 258 S------N-P---LEIIW----KSFSLVFFAEWGDRSMLA 283
           S      + P   L +IW    KS  +V   +    S++ 
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00