Citrus Sinensis ID: 019047
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 347 | 2.2.26 [Sep-21-2011] | |||||||
| O22682 | 404 | Probable cysteine synthas | yes | no | 0.956 | 0.821 | 0.667 | 1e-117 | |
| P31300 | 374 | Cysteine synthase, chloro | N/A | no | 0.763 | 0.708 | 0.656 | 5e-97 | |
| O81155 | 386 | Cysteine synthase, chloro | N/A | no | 0.743 | 0.668 | 0.664 | 1e-95 | |
| P32260 | 383 | Cysteine synthase, chloro | N/A | no | 0.740 | 0.671 | 0.640 | 2e-95 | |
| Q43725 | 430 | Cysteine synthase, mitoch | no | no | 0.757 | 0.611 | 0.618 | 6e-94 | |
| P47999 | 392 | Cysteine synthase, chloro | no | no | 0.737 | 0.653 | 0.642 | 4e-92 | |
| Q9XEA8 | 325 | Cysteine synthase OS=Oryz | no | no | 0.734 | 0.784 | 0.633 | 1e-90 | |
| Q00834 | 325 | Cysteine synthase OS=Spin | N/A | no | 0.726 | 0.775 | 0.622 | 4e-90 | |
| P38076 | 325 | Cysteine synthase OS=Trit | N/A | no | 0.726 | 0.775 | 0.629 | 4e-89 | |
| P47998 | 322 | Cysteine synthase OS=Arab | no | no | 0.726 | 0.782 | 0.625 | 6e-89 |
| >sp|O22682|CYSK4_ARATH Probable cysteine synthase, chloroplastic OS=Arabidopsis thaliana GN=At3g03630 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 423 bits (1087), Expect = e-117, Method: Compositional matrix adjust.
Identities = 229/343 (66%), Positives = 267/343 (77%), Gaps = 11/343 (3%)
Query: 14 LQLLPPHPLNIASQKRHRFARFKTS---SLSSINGALATRRRILPIVASAKAGAAASSSS 70
L+LLP PL + K HRF+ K S + +LA R + V A +G +++ +
Sbjct: 8 LRLLPQSPLGRITSKLHRFSTAKLSLFSFHHDSSSSLAVRTPVSSFVVGAISGKSSTGTK 67
Query: 71 SSLYATS--------TREIEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVA 122
S T E++ + VNIAEDVTQLIG TPMVYLN+VT+GC+ ++A
Sbjct: 68 SKSKTKRKPPPPPPVTTVAEEQHIAESETVNIAEDVTQLIGSTPMVYLNRVTDGCLADIA 127
Query: 123 AKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKL 182
AKLESMEPCRSVKDRIG SMI +AE SG ITP KTVLVEPTTGNTGLGIAFVAA KGYKL
Sbjct: 128 AKLESMEPCRSVKDRIGLSMINEAENSGAITPRKTVLVEPTTGNTGLGIAFVAAAKGYKL 187
Query: 183 IVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMAN 242
IVTMPAS N+ERR+LLRA GAEI+LT+PEKGL+GA+DKA+EIVL T NAYMFQQFDN AN
Sbjct: 188 IVTMPASINIERRMLLRALGAEIVLTNPEKGLKGAVDKAKEIVLKTKNAYMFQQFDNTAN 247
Query: 243 LKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVI 302
KIHF++TGPEIWEDT+G VDIFVA IGTGGT+TGTG FLKMMNK+IKVVGVEP+ERSVI
Sbjct: 248 TKIHFETTGPEIWEDTMGNVDIFVAGIGTGGTVTGTGGFLKMMNKDIKVVGVEPSERSVI 307
Query: 303 SGENAGYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLV 345
SG+N GY+P ILDV+LLDEV KV+N EA+ MARRLALEEGLLV
Sbjct: 308 SGDNPGYLPGILDVKLLDEVFKVSNGEAIEMARRLALEEGLLV 350
|
Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 4EC: 7 |
| >sp|P31300|CYSKP_CAPAN Cysteine synthase, chloroplastic/chromoplastic OS=Capsicum annuum PE=2 SV=1 | Back alignment and function description |
|---|
Score = 354 bits (909), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 174/265 (65%), Positives = 224/265 (84%)
Query: 81 IEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGY 140
++ + + G+NIAEDVTQLIG TPMVYLN + +GCV N+AAKLE MEPC SVKDRIG+
Sbjct: 54 VQTKSPTEIEGLNIAEDVTQLIGNTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGF 113
Query: 141 SMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRA 200
SMI+DAEE G I+PGKTVLVEPT+GNTG+G+AF+AA +GYKLI+TMPAS +LERR++L+A
Sbjct: 114 SMISDAEEKGLISPGKTVLVEPTSGNTGIGLAFIAASRGYKLILTMPASMSLERRVILKA 173
Query: 201 FGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLG 260
FGAE++LTDP KG++GA+ KAEEI+ NTP+AY+ QQFDN AN KIH+++TGPEIWEDT G
Sbjct: 174 FGAELVLTDPAKGMKGAVSKAEEILNNTPDAYILQQFDNPANPKIHYETTGPEIWEDTKG 233
Query: 261 CVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGENAGYVPSILDVQLLD 320
+DI VA IGTGGTI+GTGR+LK N IK++GVEP E +V+SG G++P LD ++D
Sbjct: 234 KIDILVAGIGTGGTISGTGRYLKEKNPNIKIIGVEPTESNVLSGGKPGFIPGNLDQDVMD 293
Query: 321 EVIKVTNDEAVNMARRLALEEGLLV 345
EVI++++DEAV A++LAL+EGLLV
Sbjct: 294 EVIEISSDEAVETAKQLALQEGLLV 318
|
Capsicum annuum (taxid: 4072) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|O81155|CYSKP_SOLTU Cysteine synthase, chloroplastic/chromoplastic OS=Solanum tuberosum PE=2 SV=1 | Back alignment and function description |
|---|
Score = 350 bits (897), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 178/268 (66%), Positives = 220/268 (82%), Gaps = 10/268 (3%)
Query: 88 DFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAE 147
+ G+NIAEDVTQLIG TPMVYLN + +GCV N+AAKLE MEPC SVKDRIG+SMI DAE
Sbjct: 63 EIEGLNIAEDVTQLIGNTPMVYLNTIAKGCVANIAAKLEIMEPCCSVKDRIGFSMIVDAE 122
Query: 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207
E G I+PGKTVLVEPT+GNTG+G+AF+AA +GYKLI+TMPAS +LERR++L+AFGAE++L
Sbjct: 123 EKGLISPGKTVLVEPTSGNTGIGLAFIAASRGYKLILTMPASMSLERRVILKAFGAELVL 182
Query: 208 TDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVA 267
TDP KG++GA+ KAEEI+ NTP+AY+ QQFDN AN KIH+++TGPEIWEDT G +DI VA
Sbjct: 183 TDPAKGMKGAVSKAEEILNNTPDAYILQQFDNPANPKIHYETTGPEIWEDTKGKIDILVA 242
Query: 268 AIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGEN----------AGYVPSILDVQ 317
IGTGGTITGTGRFLK N IK++GVEP E +V+SG AG++P LD
Sbjct: 243 GIGTGGTITGTGRFLKEQNPNIKIIGVEPTESNVLSGGKPGPHKIQGIGAGFIPGNLDQD 302
Query: 318 LLDEVIKVTNDEAVNMARRLALEEGLLV 345
++DEVI++++DEAV AR LAL+EGLLV
Sbjct: 303 VMDEVIEISSDEAVETARTLALQEGLLV 330
|
Solanum tuberosum (taxid: 4113) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|P32260|CYSKP_SPIOL Cysteine synthase, chloroplastic/chromoplastic OS=Spinacia oleracea GN=CYSK PE=1 SV=2 | Back alignment and function description |
|---|
Score = 349 bits (895), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 171/267 (64%), Positives = 223/267 (83%), Gaps = 10/267 (3%)
Query: 89 FHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEE 148
G+NIAEDV+QLIG+TPMVYLN V++G V N+AAKLESMEPC SVKDRIGYSMI DAE+
Sbjct: 62 IEGLNIAEDVSQLIGKTPMVYLNNVSKGSVANIAAKLESMEPCCSVKDRIGYSMIDDAEQ 121
Query: 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208
G ITPGKT LVEPT+GNTG+G+AF+AA +GYK+ +TMPAS ++ERR++L+AFGAE++LT
Sbjct: 122 KGVITPGKTTLVEPTSGNTGIGLAFIAAARGYKITLTMPASMSMERRVILKAFGAELVLT 181
Query: 209 DPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAA 268
DP KG++GA++KAEEI+ TP++YM QQFDN AN KIH+++TGPEIWEDT G VDIFVA
Sbjct: 182 DPAKGMKGAVEKAEEILKKTPDSYMLQQFDNPANPKIHYETTGPEIWEDTKGKVDIFVAG 241
Query: 269 IGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGEN----------AGYVPSILDVQL 318
IGTGGTI+G GR+LK N ++V+G+EP E +++SG AG+VPS LD+ +
Sbjct: 242 IGTGGTISGVGRYLKERNPGVQVIGIEPTESNILSGGKPGPHKIQGLGAGFVPSNLDLGV 301
Query: 319 LDEVIKVTNDEAVNMARRLALEEGLLV 345
+DEVI+V+++EAV MA++LA++EGLLV
Sbjct: 302 MDEVIEVSSEEAVEMAKQLAMKEGLLV 328
|
Spinacia oleracea (taxid: 3562) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|Q43725|CYSKM_ARATH Cysteine synthase, mitochondrial OS=Arabidopsis thaliana GN=OASC PE=1 SV=3 | Back alignment and function description |
|---|
Score = 344 bits (882), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 170/275 (61%), Positives = 226/275 (82%), Gaps = 12/275 (4%)
Query: 81 IEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGY 140
+++E G D G+NIA++V+QLIG+TPMVYLN + +GCV N+AAKLE MEPC SVKDRIGY
Sbjct: 102 VKRETGPD--GLNIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGY 159
Query: 141 SMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRA 200
SM+TDAE+ G I+PGK+VLVEPT+GNTG+G+AF+AA +GY+LI+TMPAS ++ERR+LL+A
Sbjct: 160 SMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKA 219
Query: 201 FGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLG 260
FGAE++LTDP KG+ GA+ KAEEI+ NTP+AYM QQFDN AN KIH+++TGPEIW+DT G
Sbjct: 220 FGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKG 279
Query: 261 CVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGEN----------AGYV 310
VDIFVA IGTGGTITG GRF+K N + +V+GVEP E ++SG AG++
Sbjct: 280 KVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFI 339
Query: 311 PSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLV 345
P LD +++DEVI ++++EA+ A++LAL+EGL+V
Sbjct: 340 PKNLDQKIMDEVIAISSEEAIETAKQLALKEGLMV 374
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|P47999|CYSKP_ARATH Cysteine synthase, chloroplastic/chromoplastic OS=Arabidopsis thaliana GN=OASB PE=1 SV=2 | Back alignment and function description |
|---|
Score = 338 bits (867), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 171/266 (64%), Positives = 215/266 (80%), Gaps = 10/266 (3%)
Query: 90 HGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEES 149
G+NIA++ QLIG+TPMVYLN V +GCV +VAAKLE MEPC SVKDRIGYSMITDAEE
Sbjct: 71 EGLNIADNAAQLIGKTPMVYLNNVVKGCVASVAAKLEIMEPCCSVKDRIGYSMITDAEEK 130
Query: 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209
G ITPGK+VLVE T+GNTG+G+AF+AA KGYKLI+TMPAS +LERR+LLRAFGAE++LT+
Sbjct: 131 GLITPGKSVLVESTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLRAFGAELVLTE 190
Query: 210 PEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAI 269
P KG+ GA+ KAEEI+ TPN+YM QQFDN AN KIH+++TGPEIWEDT G +DI VA I
Sbjct: 191 PAKGMTGAIQKAEEILKKTPNSYMLQQFDNPANPKIHYETTGPEIWEDTRGKIDILVAGI 250
Query: 270 GTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGEN----------AGYVPSILDVQLL 319
GTGGTITG GRF+K E+KV+GVEP E +++SG AG+VP LD+ ++
Sbjct: 251 GTGGTITGVGRFIKERKPELKVIGVEPTESAILSGGKPGPHKIQGIGAGFVPKNLDLAIV 310
Query: 320 DEVIKVTNDEAVNMARRLALEEGLLV 345
DE I ++++EA+ +++LAL+EGLLV
Sbjct: 311 DEYIAISSEEAIETSKQLALQEGLLV 336
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|Q9XEA8|CYSK2_ORYSJ Cysteine synthase OS=Oryza sativa subsp. japonica GN=RCS3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 333 bits (854), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 168/265 (63%), Positives = 216/265 (81%), Gaps = 10/265 (3%)
Query: 91 GVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESG 150
G +IA DVT LIG TP+VYLNKV +GC +AAKLE MEPC SVKDRIGYSMITDAEE G
Sbjct: 5 GQSIASDVTALIGNTPLVYLNKVVDGCEAQIAAKLEIMEPCSSVKDRIGYSMITDAEEKG 64
Query: 151 DITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDP 210
ITPGK+VL+EPT+GNTG+G+AF+AA KGYKLI+TMPAS ++ERRI+L+AFGAE++LTDP
Sbjct: 65 LITPGKSVLIEPTSGNTGIGLAFMAAAKGYKLILTMPASMSMERRIILKAFGAELVLTDP 124
Query: 211 EKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIG 270
G++GA+ KA+E+ PN+Y+ QQF+N AN KIH+++TGPEIW+ T G VDI V+ IG
Sbjct: 125 LLGMKGAIQKADELAAKMPNSYILQQFENPANPKIHYETTGPEIWKATAGKVDILVSGIG 184
Query: 271 TGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGE----------NAGYVPSILDVQLLD 320
TGGT+TGTG++LK N EIK+ GVEP E +++SG AG+VP +LDV LLD
Sbjct: 185 TGGTVTGTGKYLKEQNPEIKIYGVEPTESAILSGGRPGPHKIQGIGAGFVPGVLDVNLLD 244
Query: 321 EVIKVTNDEAVNMARRLALEEGLLV 345
EV++V++DEA++MA++LAL+EGLLV
Sbjct: 245 EVVQVSSDEAISMAKQLALKEGLLV 269
|
Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|Q00834|CYSK_SPIOL Cysteine synthase OS=Spinacia oleracea PE=1 SV=1 | Back alignment and function description |
|---|
Score = 332 bits (850), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 163/262 (62%), Positives = 218/262 (83%), Gaps = 10/262 (3%)
Query: 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDIT 153
IA+DVT+LIG+TP+VYLN V +GCV VAAKLE MEPC SVKDRIG+SMITDAE+SG IT
Sbjct: 8 IAKDVTELIGKTPLVYLNTVADGCVARVAAKLEGMEPCSSVKDRIGFSMITDAEKSGLIT 67
Query: 154 PGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKG 213
PG++VL+EPT+GNTG+G+AF+AA KGYKLI+TMPAS +LERR +LRAFGAE+ILTDP KG
Sbjct: 68 PGESVLIEPTSGNTGIGLAFIAAAKGYKLIITMPASMSLERRTILRAFGAELILTDPAKG 127
Query: 214 LRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGG 273
++GA+ KAEEI TPN+Y+ QQF+N AN K+H+++TGPEIW+ T G +DIFV+ IGTGG
Sbjct: 128 MKGAVQKAEEIRDKTPNSYILQQFENPANPKVHYETTGPEIWKGTGGKIDIFVSGIGTGG 187
Query: 274 TITGTGRFLKMMNKEIKVVGVEPAERSVISGEN----------AGYVPSILDVQLLDEVI 323
TITG G++LK N ++K++G+EP E +V+SG AG++P +LDV ++DEV+
Sbjct: 188 TITGAGKYLKEQNPDVKLIGLEPVESAVLSGGKPGPHKIQGLGAGFIPGVLDVNIIDEVV 247
Query: 324 KVTNDEAVNMARRLALEEGLLV 345
+++++E++ MA+ LAL+EGLLV
Sbjct: 248 QISSEESIEMAKLLALKEGLLV 269
|
Spinacia oleracea (taxid: 3562) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|P38076|CYSK_WHEAT Cysteine synthase OS=Triticum aestivum GN=CYS1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 328 bits (840), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 165/262 (62%), Positives = 214/262 (81%), Gaps = 10/262 (3%)
Query: 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDIT 153
IA+DVT+LIG TP+VYLNKVT+GCVG VAAKLESMEPC SVKDRIGYSMITDAEE G I
Sbjct: 9 IAKDVTELIGNTPLVYLNKVTDGCVGRVAAKLESMEPCSSVKDRIGYSMITDAEEKGFIV 68
Query: 154 PGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKG 213
PGK+VL+EPT+GNTG+G+AF+AA KGY+L++TMPAS ++ERRI+L+AFGAE+ILTDP G
Sbjct: 69 PGKSVLIEPTSGNTGIGLAFMAAAKGYRLVLTMPASMSMERRIILKAFGAELILTDPLLG 128
Query: 214 LRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGG 273
++GA+ KAEE+ TPN+Y+ QQF+N AN KIH+++TGPEIW+ T G +D V+ IGTGG
Sbjct: 129 MKGAVQKAEELAAKTPNSYILQQFENAANPKIHYETTGPEIWKGTGGKIDGLVSGIGTGG 188
Query: 274 TITGTGRFLKMMNKEIKVVGVEPAERSV----------ISGENAGYVPSILDVQLLDEVI 323
TITGTG++L+ N IK+ GVEP E ++ I G AG++P +LDV ++DE I
Sbjct: 189 TITGTGKYLQEQNPNIKLYGVEPTESAILNGGKPGPHKIQGIGAGFIPGVLDVDIIDETI 248
Query: 324 KVTNDEAVNMARRLALEEGLLV 345
+V++DE++ MA+ LAL+EGLLV
Sbjct: 249 QVSSDESIEMAKSLALKEGLLV 270
|
Triticum aestivum (taxid: 4565) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 7 |
| >sp|P47998|CYSK1_ARATH Cysteine synthase OS=Arabidopsis thaliana GN=OASA1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 327 bits (839), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 164/262 (62%), Positives = 213/262 (81%), Gaps = 10/262 (3%)
Query: 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDIT 153
IA+DVT+LIG TP+VYLN V EGCVG VAAKLE MEPC SVKDRIG+SMI+DAE+ G I
Sbjct: 5 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIK 64
Query: 154 PGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKG 213
PG++VL+EPT+GNTG+G+AF AA KGYKLI+TMPAS + ERRI+L AFG E++LTDP KG
Sbjct: 65 PGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKG 124
Query: 214 LRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGG 273
++GA+ KAEEI+ TPN YM QQF+N AN KIH+++TGPEIW+ T G +D FV+ IGTGG
Sbjct: 125 MKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGG 184
Query: 274 TITGTGRFLKMMNKEIKVVGVEPAERSVISGEN----------AGYVPSILDVQLLDEVI 323
TITG G++LK N +K+ GVEP E +++SG AG++PS+L+V L+DEV+
Sbjct: 185 TITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDEVV 244
Query: 324 KVTNDEAVNMARRLALEEGLLV 345
+V++DE+++MAR+LAL+EGLLV
Sbjct: 245 QVSSDESIDMARQLALKEGLLV 266
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 5 EC: . EC: 1 EC: . EC: 4 EC: 7 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 347 | ||||||
| 359480989 | 390 | PREDICTED: probable cysteine synthase, c | 0.743 | 0.661 | 0.825 | 1e-119 | |
| 297833036 | 405 | hypothetical protein ARALYDRAFT_896375 [ | 0.956 | 0.819 | 0.668 | 1e-118 | |
| 356571802 | 371 | PREDICTED: probable cysteine synthase, c | 0.809 | 0.757 | 0.760 | 1e-117 | |
| 15228596 | 404 | cysteine synthase A [Arabidopsis thalian | 0.956 | 0.821 | 0.667 | 1e-116 | |
| 307136136 | 369 | cysteine synthase [Cucumis melo subsp. m | 0.731 | 0.688 | 0.826 | 1e-115 | |
| 357508933 | 368 | Cysteine synthase [Medicago truncatula] | 0.792 | 0.747 | 0.763 | 1e-115 | |
| 356571800 | 381 | PREDICTED: probable cysteine synthase, c | 0.809 | 0.737 | 0.734 | 1e-115 | |
| 356506194 | 372 | PREDICTED: probable cysteine synthase, c | 0.740 | 0.690 | 0.824 | 1e-115 | |
| 449437666 | 369 | PREDICTED: probable cysteine synthase, c | 0.731 | 0.688 | 0.814 | 1e-114 | |
| 218189270 | 392 | hypothetical protein OsI_04195 [Oryza sa | 0.887 | 0.785 | 0.690 | 1e-109 |
| >gi|359480989|ref|XP_002271966.2| PREDICTED: probable cysteine synthase, chloroplastic-like [Vitis vinifera] gi|296085861|emb|CBI31185.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust.
Identities = 213/258 (82%), Positives = 243/258 (94%)
Query: 88 DFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAE 147
D H VNIA+DVTQLIGRTPM+YLNKVT+GCV N+AAKLESMEPCRSVKDRIGYSMI+DAE
Sbjct: 78 DIHTVNIADDVTQLIGRTPMIYLNKVTQGCVANIAAKLESMEPCRSVKDRIGYSMISDAE 137
Query: 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207
E+G I+PG+++LVEPT+GNTGLGIAFVAA KGYKLIVTMPAS ++ERRILLRAFGAEI+L
Sbjct: 138 ETGAISPGRSILVEPTSGNTGLGIAFVAATKGYKLIVTMPASIDIERRILLRAFGAEIVL 197
Query: 208 TDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVA 267
TDP KG++GA+DKAEEIV + PNAYMFQQFDNMAN KIHF++TGPEIWEDT+G VDIFVA
Sbjct: 198 TDPMKGIKGAVDKAEEIVQSMPNAYMFQQFDNMANAKIHFETTGPEIWEDTVGSVDIFVA 257
Query: 268 AIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGENAGYVPSILDVQLLDEVIKVTN 327
IGTGGT+TGTGR+LKMM ++IKVVGVEPA+RSVISG+N GYVPSILDV+LLDEV+KVTN
Sbjct: 258 GIGTGGTVTGTGRYLKMMKRDIKVVGVEPADRSVISGDNPGYVPSILDVKLLDEVLKVTN 317
Query: 328 DEAVNMARRLALEEGLLV 345
DEAV MAR+LALEEGLLV
Sbjct: 318 DEAVEMARKLALEEGLLV 335
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297833036|ref|XP_002884400.1| hypothetical protein ARALYDRAFT_896375 [Arabidopsis lyrata subsp. lyrata] gi|297330240|gb|EFH60659.1| hypothetical protein ARALYDRAFT_896375 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 230/344 (66%), Positives = 271/344 (78%), Gaps = 12/344 (3%)
Query: 14 LQLLPPHPLNIASQKRHRFARFKTSSLSSINGALATRRRILPIVASAKAGAAASSSSSSL 73
L+LLP P + + KRHRF+ K S S + + ++ P+ +S GA + SS+
Sbjct: 8 LRLLPQSPFRLIASKRHRFSDAKPSLFSFNHESSSSFILRTPVSSSFVVGAISGKSSTGT 67
Query: 74 YATS------------TREIEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNV 121
A S T E+++ + VNIAEDVTQLIG TPMVYLN+VT+GC+ ++
Sbjct: 68 KAKSKAKRKPPPPPPVTTVAEEQDIAESETVNIAEDVTQLIGSTPMVYLNRVTDGCLADI 127
Query: 122 AAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYK 181
AAKLESMEPCRSVKDRIG SMI +AE+SG I+ KTVLVEPTTGNTGLGIAFVAA KGYK
Sbjct: 128 AAKLESMEPCRSVKDRIGLSMINEAEDSGAISSRKTVLVEPTTGNTGLGIAFVAAAKGYK 187
Query: 182 LIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMA 241
LIVTMPAS N+ERR+LLRA GAEI+LT+PEKGLRGA+DKA+EIVL T NAYMFQQFDN A
Sbjct: 188 LIVTMPASINVERRMLLRALGAEIVLTNPEKGLRGAVDKAKEIVLKTKNAYMFQQFDNTA 247
Query: 242 NLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSV 301
N KIHF++TGPEIWEDT+G VDIFVA IGTGGT+TGTG FLKMMNK+IKVVGVEP+ERSV
Sbjct: 248 NTKIHFETTGPEIWEDTMGNVDIFVAGIGTGGTVTGTGGFLKMMNKDIKVVGVEPSERSV 307
Query: 302 ISGENAGYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLV 345
ISG+N GY+P ILDV+LLDEV KV+N EA+ MARRLALEEGLLV
Sbjct: 308 ISGDNPGYLPGILDVKLLDEVFKVSNGEAIEMARRLALEEGLLV 351
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356571802|ref|XP_003554061.1| PREDICTED: probable cysteine synthase, chloroplastic-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 219/288 (76%), Positives = 251/288 (87%), Gaps = 7/288 (2%)
Query: 58 ASAKAGAAASSSSSSLYATSTREIEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGC 117
+ ++ AA + SS+ STR+ F VNIAEDVTQLIG TPMVYLNKVTEGC
Sbjct: 39 SQSQHTAAKAKVSSAPLVYSTRQ-------GFDTVNIAEDVTQLIGNTPMVYLNKVTEGC 91
Query: 118 VGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAV 177
V N+AAKLESMEPCRSVKDRIGYSM++DAEE G I+PGKT+LVEPTTGNTGLGIAFVAA
Sbjct: 92 VANIAAKLESMEPCRSVKDRIGYSMLSDAEEIGAISPGKTILVEPTTGNTGLGIAFVAAT 151
Query: 178 KGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQF 237
KGYKLIVTMPAS N+ERRILLRAFGAE++LTD EKGL+GA+DKAEEIV NTPNAYMF+QF
Sbjct: 152 KGYKLIVTMPASINVERRILLRAFGAEVVLTDAEKGLKGAVDKAEEIVRNTPNAYMFRQF 211
Query: 238 DNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPA 297
DNM N KIHF++TGPEIWEDT+G VD+ VA IGTGGT+TGTGR+LKMMNK IKVVGVEPA
Sbjct: 212 DNMTNTKIHFETTGPEIWEDTMGNVDVLVAGIGTGGTVTGTGRYLKMMNKNIKVVGVEPA 271
Query: 298 ERSVISGENAGYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLV 345
+RSV+SG++ G++PSILD++LLDEVIKVTN EAV MARRLAL+EGLLV
Sbjct: 272 DRSVVSGDSPGFMPSILDIKLLDEVIKVTNVEAVEMARRLALKEGLLV 319
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15228596|ref|NP_187013.1| cysteine synthase A [Arabidopsis thaliana] gi|11131558|sp|O22682.1|CYSK4_ARATH RecName: Full=Probable cysteine synthase, chloroplastic; Short=CSase; AltName: Full=CS26; AltName: Full=O-acetylserine (thiol)-lyase; Short=OAS-TL; AltName: Full=O-acetylserine sulfhydrylase; Flags: Precursor gi|6091759|gb|AAF03469.1|AC009327_8 O-acetylserine (thiol) lyase [Arabidopsis thaliana] gi|2281780|dbj|BAA21628.1| O-acetylserine (thiol) lyase [Arabidopsis thaliana] gi|20466215|gb|AAM20425.1| O-acetylserine (thiol) lyase [Arabidopsis thaliana] gi|25084065|gb|AAN72166.1| O-acetylserine (thiol) lyase [Arabidopsis thaliana] gi|332640444|gb|AEE73965.1| cysteine synthase A [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust.
Identities = 229/343 (66%), Positives = 267/343 (77%), Gaps = 11/343 (3%)
Query: 14 LQLLPPHPLNIASQKRHRFARFKTS---SLSSINGALATRRRILPIVASAKAGAAASSSS 70
L+LLP PL + K HRF+ K S + +LA R + V A +G +++ +
Sbjct: 8 LRLLPQSPLGRITSKLHRFSTAKLSLFSFHHDSSSSLAVRTPVSSFVVGAISGKSSTGTK 67
Query: 71 SSLYATS--------TREIEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVA 122
S T E++ + VNIAEDVTQLIG TPMVYLN+VT+GC+ ++A
Sbjct: 68 SKSKTKRKPPPPPPVTTVAEEQHIAESETVNIAEDVTQLIGSTPMVYLNRVTDGCLADIA 127
Query: 123 AKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKL 182
AKLESMEPCRSVKDRIG SMI +AE SG ITP KTVLVEPTTGNTGLGIAFVAA KGYKL
Sbjct: 128 AKLESMEPCRSVKDRIGLSMINEAENSGAITPRKTVLVEPTTGNTGLGIAFVAAAKGYKL 187
Query: 183 IVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMAN 242
IVTMPAS N+ERR+LLRA GAEI+LT+PEKGL+GA+DKA+EIVL T NAYMFQQFDN AN
Sbjct: 188 IVTMPASINIERRMLLRALGAEIVLTNPEKGLKGAVDKAKEIVLKTKNAYMFQQFDNTAN 247
Query: 243 LKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVI 302
KIHF++TGPEIWEDT+G VDIFVA IGTGGT+TGTG FLKMMNK+IKVVGVEP+ERSVI
Sbjct: 248 TKIHFETTGPEIWEDTMGNVDIFVAGIGTGGTVTGTGGFLKMMNKDIKVVGVEPSERSVI 307
Query: 303 SGENAGYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLV 345
SG+N GY+P ILDV+LLDEV KV+N EA+ MARRLALEEGLLV
Sbjct: 308 SGDNPGYLPGILDVKLLDEVFKVSNGEAIEMARRLALEEGLLV 350
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|307136136|gb|ADN33981.1| cysteine synthase [Cucumis melo subsp. melo] | Back alignment and taxonomy information |
|---|
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 210/254 (82%), Positives = 235/254 (92%)
Query: 92 VNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGD 151
VNIA+DVTQLIGRTPMVYLNKVTEGCVGNVAAKLESM+PCRSVKDRIGYSMI+ AEESG
Sbjct: 64 VNIADDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMQPCRSVKDRIGYSMISSAEESGA 123
Query: 152 ITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPE 211
I+P KT+LVEPTTGNTGLGIAFVAA KGYKL+ TMPAS N+ERR+LLRAFGAEI+LTDPE
Sbjct: 124 ISPDKTILVEPTTGNTGLGIAFVAAAKGYKLVATMPASINVERRVLLRAFGAEIVLTDPE 183
Query: 212 KGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGT 271
KGL+GA+ KAEEI+++TPNAYM QQFDN AN K+HF++TGPEIWEDT+G VDI VA IGT
Sbjct: 184 KGLQGAIAKAEEILISTPNAYMLQQFDNSANTKVHFETTGPEIWEDTMGSVDILVAGIGT 243
Query: 272 GGTITGTGRFLKMMNKEIKVVGVEPAERSVISGENAGYVPSILDVQLLDEVIKVTNDEAV 331
GGTITGTGR+L M + I++VGVEPAERS+ISGENAGYVP ILDV+LLDEVIKVTNDEA+
Sbjct: 244 GGTITGTGRYLNMRKETIQIVGVEPAERSIISGENAGYVPPILDVKLLDEVIKVTNDEAI 303
Query: 332 NMARRLALEEGLLV 345
MARRLALEEGLLV
Sbjct: 304 EMARRLALEEGLLV 317
|
Source: Cucumis melo subsp. melo Species: Cucumis melo Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357508933|ref|XP_003624755.1| Cysteine synthase [Medicago truncatula] gi|355499770|gb|AES80973.1| Cysteine synthase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 216/283 (76%), Positives = 250/283 (88%), Gaps = 8/283 (2%)
Query: 63 GAAASSSSSSLYATSTREIEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVA 122
A A+ S+ SL++T+ EG D VNIAEDVTQLIG TPM+YLNKVT+GCV NVA
Sbjct: 42 AATATVSTPSLFSTT------REGLD--AVNIAEDVTQLIGNTPMIYLNKVTDGCVANVA 93
Query: 123 AKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKL 182
AKLESMEPCRSVKDRIGYSM+ DAEESG I+PGKTVLVEPTTGNTGLG+AFVAA KGYKL
Sbjct: 94 AKLESMEPCRSVKDRIGYSMLADAEESGAISPGKTVLVEPTTGNTGLGLAFVAATKGYKL 153
Query: 183 IVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMAN 242
IVTMPAS N+ERRILLR FGAE++LT+ EKGL+GA+DKAEEIV TPNAYMF+QFDN N
Sbjct: 154 IVTMPASVNIERRILLRTFGAEVVLTNAEKGLKGAVDKAEEIVYGTPNAYMFRQFDNRNN 213
Query: 243 LKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVI 302
KIHF++TGPEIWEDT+G VD+ VAAIGTGGTITGTG++LK+MNK+IKVVGVEPA+RS+I
Sbjct: 214 TKIHFETTGPEIWEDTMGNVDLLVAAIGTGGTITGTGQYLKLMNKKIKVVGVEPADRSII 273
Query: 303 SGENAGYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLV 345
SG+N G++PSILD++LLDEV+KVTN EA+ MARRLALEEGLLV
Sbjct: 274 SGDNPGFIPSILDIKLLDEVVKVTNVEAIEMARRLALEEGLLV 316
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356571800|ref|XP_003554060.1| PREDICTED: probable cysteine synthase, chloroplastic-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust.
Identities = 219/298 (73%), Positives = 251/298 (84%), Gaps = 17/298 (5%)
Query: 58 ASAKAGAAASSSSSSLYATSTREIEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGC 117
+ ++ AA + SS+ STR+ F VNIAEDVTQLIG TPMVYLNKVTEGC
Sbjct: 39 SQSQHTAAKAKVSSAPLVYSTRQ-------GFDTVNIAEDVTQLIGNTPMVYLNKVTEGC 91
Query: 118 VGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAV 177
V N+AAKLESMEPCRSVKDRIGYSM++DAEE G I+PGKT+LVEPTTGNTGLGIAFVAA
Sbjct: 92 VANIAAKLESMEPCRSVKDRIGYSMLSDAEEIGAISPGKTILVEPTTGNTGLGIAFVAAT 151
Query: 178 KGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQF 237
KGYKLIVTMPAS N+ERRILLRAFGAE++LTD EKGL+GA+DKAEEIV NTPNAYMF+QF
Sbjct: 152 KGYKLIVTMPASINVERRILLRAFGAEVVLTDAEKGLKGAVDKAEEIVRNTPNAYMFRQF 211
Query: 238 DNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPA 297
DNM N KIHF++TGPEIWEDT+G VD+ VA IGTGGT+TGTGR+LKMMNK IKVVGVEPA
Sbjct: 212 DNMTNTKIHFETTGPEIWEDTMGNVDVLVAGIGTGGTVTGTGRYLKMMNKNIKVVGVEPA 271
Query: 298 ERSVISGEN----------AGYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLV 345
+RSV+SG++ G++PSILD++LLDEVIKVTN EAV MARRLAL+EGLLV
Sbjct: 272 DRSVVSGDSPGMNILQNFVVGFMPSILDIKLLDEVIKVTNVEAVEMARRLALKEGLLV 329
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356506194|ref|XP_003521872.1| PREDICTED: probable cysteine synthase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust.
Identities = 212/257 (82%), Positives = 237/257 (92%)
Query: 89 FHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEE 148
F VNIAEDVTQLIG TPMVYLNKVTEGCV N+AAKLESMEPCRSVKDRIGYSM++DAEE
Sbjct: 64 FDTVNIAEDVTQLIGNTPMVYLNKVTEGCVANIAAKLESMEPCRSVKDRIGYSMLSDAEE 123
Query: 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208
G I+PGKT+LVEPTTGNTGLGIAFVAA KGYKLIVTMPAS N+ERRILLRAFGAE+ILT
Sbjct: 124 IGAISPGKTILVEPTTGNTGLGIAFVAATKGYKLIVTMPASVNVERRILLRAFGAEVILT 183
Query: 209 DPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAA 268
D EKGL+GA+DKAEEIV +T NAYMF+QFDNM N KIHF++TGPEIWEDT+G VDI VA
Sbjct: 184 DAEKGLKGAVDKAEEIVHSTNNAYMFRQFDNMTNTKIHFETTGPEIWEDTMGNVDILVAG 243
Query: 269 IGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGENAGYVPSILDVQLLDEVIKVTND 328
IGTGGT+TGTG++LKMMNK IKVVGVEPA+RSV+SG++ G++PSILDV+LLDEVIKVTN
Sbjct: 244 IGTGGTVTGTGQYLKMMNKNIKVVGVEPADRSVVSGDSPGFMPSILDVKLLDEVIKVTNV 303
Query: 329 EAVNMARRLALEEGLLV 345
EAV MARRLAL+EGLLV
Sbjct: 304 EAVEMARRLALKEGLLV 320
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449437666|ref|XP_004136612.1| PREDICTED: probable cysteine synthase, chloroplastic-like [Cucumis sativus] gi|449523732|ref|XP_004168877.1| PREDICTED: probable cysteine synthase, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 207/254 (81%), Positives = 234/254 (92%)
Query: 92 VNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGD 151
VNIA+DVTQLIG TPMVYLNKVTEGC+GNVAAKLESM+PCRSVKDRIGYSMI+ AEESG
Sbjct: 64 VNIADDVTQLIGSTPMVYLNKVTEGCLGNVAAKLESMQPCRSVKDRIGYSMISSAEESGV 123
Query: 152 ITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPE 211
I+P KT+LVEPTTGNTGLGIAFVAA KGYKL+ TMPAS N+ERR+LLRAFGAEI+LTDPE
Sbjct: 124 ISPDKTILVEPTTGNTGLGIAFVAAAKGYKLVATMPASINVERRVLLRAFGAEIVLTDPE 183
Query: 212 KGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGT 271
KGL+GA+ KAEEI+++TPNAYM QQFDN AN K+HF++TGPEIWEDT+G VDI VA IGT
Sbjct: 184 KGLQGAIAKAEEILISTPNAYMLQQFDNSANTKVHFETTGPEIWEDTMGSVDILVAGIGT 243
Query: 272 GGTITGTGRFLKMMNKEIKVVGVEPAERSVISGENAGYVPSILDVQLLDEVIKVTNDEAV 331
GGTITGTGR+L M + I++VGVEPAERS+ISGENAGYVP ILD++LLDEVIKVTNDEA+
Sbjct: 244 GGTITGTGRYLNMRKETIQIVGVEPAERSIISGENAGYVPPILDIKLLDEVIKVTNDEAI 303
Query: 332 NMARRLALEEGLLV 345
MARRLALEEGLLV
Sbjct: 304 EMARRLALEEGLLV 317
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|218189270|gb|EEC71697.1| hypothetical protein OsI_04195 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 216/313 (69%), Positives = 256/313 (81%), Gaps = 5/313 (1%)
Query: 38 SSLSSINGALATRRRILPIVASAKAGA-----AASSSSSSLYATSTREIEKEEGNDFHGV 92
S++S+ G+++ R L ++AS + AA SSS A + EI +E +D V
Sbjct: 25 STVSAAYGSVSAPRAPLFLLASPRPVPPRRPLAAGSSSPKAAAPAAVEIPEEYVDDVDAV 84
Query: 93 NIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDI 152
NIA+DVTQLIG+TPMVYLN V +GCV N+AAKLE M PCRSVKDRIG SMI DAEE G I
Sbjct: 85 NIAQDVTQLIGKTPMVYLNNVVDGCVANIAAKLEYMGPCRSVKDRIGLSMIDDAEEKGLI 144
Query: 153 TPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEK 212
P KT+LVEPTTGNTG+G+A VAA +GYKLI T+P+S ++ERR+LLRAFGAEI+LTDP K
Sbjct: 145 FPNKTILVEPTTGNTGIGLASVAAARGYKLIATVPSSIDVERRVLLRAFGAEIVLTDPNK 204
Query: 213 GLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTG 272
GL+GALDKAEEIV TPNAYMFQQF+N AN +IHF +TGPEIWEDTLG VDI VA+IGTG
Sbjct: 205 GLKGALDKAEEIVSKTPNAYMFQQFNNSANSEIHFQTTGPEIWEDTLGTVDILVASIGTG 264
Query: 273 GTITGTGRFLKMMNKEIKVVGVEPAERSVISGENAGYVPSILDVQLLDEVIKVTNDEAVN 332
GTITGTGR+LKMMNK+IKV+GVEPAE SVISG+NAGY+PSILDVQLLDEV+KVT EAV+
Sbjct: 265 GTITGTGRYLKMMNKDIKVIGVEPAETSVISGDNAGYIPSILDVQLLDEVVKVTTTEAVD 324
Query: 333 MARRLALEEGLLV 345
+AR LAL+EGLLV
Sbjct: 325 VARELALKEGLLV 337
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 347 | ||||||
| TAIR|locus:2096454 | 404 | CS26 "cysteine synthase 26" [A | 0.945 | 0.811 | 0.631 | 6e-103 | |
| TAIR|locus:2080417 | 433 | OASC "O-acetylserine (thiol) l | 0.757 | 0.607 | 0.581 | 1.7e-84 | |
| TAIR|locus:2043964 | 392 | OASB "O-acetylserine (thiol) l | 0.757 | 0.670 | 0.596 | 5e-83 | |
| TAIR|locus:2130419 | 322 | OASA1 "O-acetylserine (thiol) | 0.726 | 0.782 | 0.587 | 1.4e-80 | |
| UNIPROTKB|Q1KLZ2 | 376 | CAS1 "L-3-cyanoalanine synthas | 0.743 | 0.686 | 0.529 | 1.7e-73 | |
| UNIPROTKB|Q76MX2 | 351 | PCAS-1 "Bifunctional L-3-cyano | 0.734 | 0.726 | 0.520 | 1.6e-72 | |
| UNIPROTKB|Q43153 | 368 | CYSC "Bifunctional L-3-cyanoal | 0.740 | 0.698 | 0.516 | 5.3e-72 | |
| TAIR|locus:2114804 | 324 | CYSD1 "cysteine synthase D1" [ | 0.729 | 0.780 | 0.547 | 6.7e-72 | |
| UNIPROTKB|Q1KLZ1 | 375 | CAS2 "L-3-cyanoalanine synthas | 0.743 | 0.688 | 0.522 | 1.1e-71 | |
| TAIR|locus:2082837 | 368 | CYSC1 "cysteine synthase C1" [ | 0.743 | 0.701 | 0.507 | 7e-70 |
| TAIR|locus:2096454 CS26 "cysteine synthase 26" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1020 (364.1 bits), Expect = 6.0e-103, P = 6.0e-103
Identities = 214/339 (63%), Positives = 245/339 (72%)
Query: 18 PPHPLNIASQKRHRFARFKTSSLS---SINGALATRRRILPIVXXXXXXXXXXXXXXXXX 74
P PL + K HRF+ K S S + +LA R + V
Sbjct: 12 PQSPLGRITSKLHRFSTAKLSLFSFHHDSSSSLAVRTPVSSFVVGAISGKSSTGTKSKSK 71
Query: 75 XXX--------TREIEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLE 126
T E++ + VNIAEDVTQLIG TPMVYLN+VT+GC+ ++AAKLE
Sbjct: 72 TKRKPPPPPPVTTVAEEQHIAESETVNIAEDVTQLIGSTPMVYLNRVTDGCLADIAAKLE 131
Query: 127 SMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTM 186
SMEPCRSVKDRIG SMI +AE SG ITP KTVLVEPTTGNTGLGIAFVAA KGYKLIVTM
Sbjct: 132 SMEPCRSVKDRIGLSMINEAENSGAITPRKTVLVEPTTGNTGLGIAFVAAAKGYKLIVTM 191
Query: 187 PASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIH 246
PAS N+ERR+LLRA GAEI+LT+PEKGL+GA+DKA+EIVL T NAYMFQQFDN AN KIH
Sbjct: 192 PASINIERRMLLRALGAEIVLTNPEKGLKGAVDKAKEIVLKTKNAYMFQQFDNTANTKIH 251
Query: 247 FDSTGPEIWEDTLGCVDIFVAAXXXXXXXXXXXRFLKMMNKEIKVVGVEPAERSVISGEN 306
F++TGPEIWEDT+G VDIFVA FLKMMNK+IKVVGVEP+ERSVISG+N
Sbjct: 252 FETTGPEIWEDTMGNVDIFVAGIGTGGTVTGTGGFLKMMNKDIKVVGVEPSERSVISGDN 311
Query: 307 AGYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLV 345
GY+P ILDV+LLDEV KV+N EA+ MARRLALEEGLLV
Sbjct: 312 PGYLPGILDVKLLDEVFKVSNGEAIEMARRLALEEGLLV 350
|
|
| TAIR|locus:2080417 OASC "O-acetylserine (thiol) lyase isoform C" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 846 (302.9 bits), Expect = 1.7e-84, P = 1.7e-84
Identities = 160/275 (58%), Positives = 216/275 (78%)
Query: 81 IEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGY 140
+++E G D G+NIA++V+QLIG+TPMVYLN + +GCV N+AAKLE MEPC SVKDRIGY
Sbjct: 102 VKRETGPD--GLNIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGY 159
Query: 141 SMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRA 200
SM+TDAE+ G I+PGK+VLVEPT+GNTG+G+AF+AA +GY+LI+TMPAS ++ERR+LL+A
Sbjct: 160 SMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKA 219
Query: 201 FGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLG 260
FGAE++LTDP KG+ GA+ KAEEI+ NTP+AYM QQFDN AN KIH+++TGPEIW+DT G
Sbjct: 220 FGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKG 279
Query: 261 CVDIFVAAXXXXXXXXXXXRFLKMMNKEIKVVGVEPAERSVISGEN----------AGYV 310
VDIFVA RF+K N + +V+GVEP E ++SG AG++
Sbjct: 280 KVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFI 339
Query: 311 PSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLV 345
P LD +++DEVI ++++EA+ A++LAL+EGL+V
Sbjct: 340 PKNLDQKIMDEVIAISSEEAIETAKQLALKEGLMV 374
|
|
| TAIR|locus:2043964 OASB "O-acetylserine (thiol) lyase B" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 832 (297.9 bits), Expect = 5.0e-83, P = 5.0e-83
Identities = 164/275 (59%), Positives = 210/275 (76%)
Query: 81 IEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGY 140
I+ E G + G+NIA++ QLIG+TPMVYLN V +GCV +VAAKLE MEPC SVKDRIGY
Sbjct: 64 IKPEAGVE--GLNIADNAAQLIGKTPMVYLNNVVKGCVASVAAKLEIMEPCCSVKDRIGY 121
Query: 141 SMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRA 200
SMITDAEE G ITPGK+VLVE T+GNTG+G+AF+AA KGYKLI+TMPAS +LERR+LLRA
Sbjct: 122 SMITDAEEKGLITPGKSVLVESTSGNTGIGLAFIAASKGYKLILTMPASMSLERRVLLRA 181
Query: 201 FGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLG 260
FGAE++LT+P KG+ GA+ KAEEI+ TPN+YM QQFDN AN KIH+++TGPEIWEDT G
Sbjct: 182 FGAELVLTEPAKGMTGAIQKAEEILKKTPNSYMLQQFDNPANPKIHYETTGPEIWEDTRG 241
Query: 261 CVDIFVAAXXXXXXXXXXXRFLKMMNKEIKVVGVEPAERSVISGEN----------AGYV 310
+DI VA RF+K E+KV+GVEP E +++SG AG+V
Sbjct: 242 KIDILVAGIGTGGTITGVGRFIKERKPELKVIGVEPTESAILSGGKPGPHKIQGIGAGFV 301
Query: 311 PSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLV 345
P LD+ ++DE I ++++EA+ +++LAL+EGLLV
Sbjct: 302 PKNLDLAIVDEYIAISSEEAIETSKQLALQEGLLV 336
|
|
| TAIR|locus:2130419 OASA1 "O-acetylserine (thiol) lyase (OAS-TL) isoform A1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
Identities = 154/262 (58%), Positives = 203/262 (77%)
Query: 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDIT 153
IA+DVT+LIG TP+VYLN V EGCVG VAAKLE MEPC SVKDRIG+SMI+DAE+ G I
Sbjct: 5 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIK 64
Query: 154 PGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKG 213
PG++VL+EPT+GNTG+G+AF AA KGYKLI+TMPAS + ERRI+L AFG E++LTDP KG
Sbjct: 65 PGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKG 124
Query: 214 LRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAXXXXX 273
++GA+ KAEEI+ TPN YM QQF+N AN KIH+++TGPEIW+ T G +D FV+
Sbjct: 125 MKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGG 184
Query: 274 XXXXXXRFLKMMNKEIKVVGVEPAERSVISGEN----------AGYVPSILDVQLLDEVI 323
++LK N +K+ GVEP E +++SG AG++PS+L+V L+DEV+
Sbjct: 185 TITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDEVV 244
Query: 324 KVTNDEAVNMARRLALEEGLLV 345
+V++DE+++MAR+LAL+EGLLV
Sbjct: 245 QVSSDESIDMARQLALKEGLLV 266
|
|
| UNIPROTKB|Q1KLZ2 CAS1 "L-3-cyanoalanine synthase 1, mitochondrial" [Malus x domestica (taxid:3750)] | Back alignment and assigned GO terms |
|---|
Score = 742 (266.3 bits), Expect = 1.7e-73, P = 1.7e-73
Identities = 142/268 (52%), Positives = 193/268 (72%)
Query: 88 DFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAE 147
D G I V+QLIGRTP+VYLNKVTEGC +A K E +P S+KDR SMI DAE
Sbjct: 49 DLPGTQIKTQVSQLIGRTPIVYLNKVTEGCGAYIAVKQEMFQPTASIKDRPALSMINDAE 108
Query: 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207
E G ITPG+T+L+EPT+GN G+ +AF+AA++GYK+++TMP+ T+LERR+ +R FGA++IL
Sbjct: 109 EKGLITPGETILIEPTSGNMGISMAFMAAMRGYKMVLTMPSYTSLERRVCMRCFGADLIL 168
Query: 208 TDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVA 267
TDP KG+ G + KA +++ +TPNAYM QQF N AN K+HF++TGPEIWEDT G VDIFV
Sbjct: 169 TDPTKGMGGTVKKAYDLLESTPNAYMLQQFSNPANTKVHFETTGPEIWEDTNGQVDIFVM 228
Query: 268 AXXXXXXXXXXXRFLKMMNKEIKVVGVEPAERSVISG----------ENAGYVPSILDVQ 317
++LK N +++ GVEPAE +V++G G+ P ILD+
Sbjct: 229 GIGSGGTVSGVGQYLKSKNPNVQIYGVEPAESNVLNGGKPGPHSIMGNGVGFKPDILDLD 288
Query: 318 LLDEVIKVTNDEAVNMARRLALEEGLLV 345
+L+ VI+VT+++AVNMAR+LAL+EGL+V
Sbjct: 289 MLERVIEVTSEDAVNMARQLALKEGLMV 316
|
|
| UNIPROTKB|Q76MX2 PCAS-1 "Bifunctional L-3-cyanoalanine synthase/cysteine synthase 1, mitochondrial" [Solanum tuberosum (taxid:4113)] | Back alignment and assigned GO terms |
|---|
Score = 733 (263.1 bits), Expect = 1.6e-72, P = 1.6e-72
Identities = 138/265 (52%), Positives = 192/265 (72%)
Query: 91 GVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESG 150
G NI V+QLIG+TP+VYLNKV+EGC +A K E M+P S+KDR ++MI DAE+ G
Sbjct: 29 GTNIKTQVSQLIGKTPLVYLNKVSEGCGAYIAVKQEMMQPTSSIKDRPAFAMINDAEKKG 88
Query: 151 DITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDP 210
ITPGKT L+EPT+GN G+ +AF+AA+KGYK+I+TMP+ T+LERR+ +RAFGA+++ TDP
Sbjct: 89 LITPGKTTLIEPTSGNMGISMAFMAAMKGYKMILTMPSYTSLERRVTMRAFGADLVTTDP 148
Query: 211 EKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAXX 270
KG+ G + KA +++ +TPNAYM QQF N AN + HF++TGPEIWEDT G VDIFV
Sbjct: 149 TKGMGGTIKKAYDLLESTPNAYMLQQFSNPANTQAHFETTGPEIWEDTQGNVDIFVMGIG 208
Query: 271 XXXXXXXXXRFLKMMNKEIKVVGVEPAERSVISGEN----------AGYVPSILDVQLLD 320
++LK N +K+ G+EP E +V++G N G+ P ILD+ +++
Sbjct: 209 SGGTVSGVGQYLKSKNPNVKIYGIEPTESNVLNGGNPGPHEITGNGVGFKPDILDMDVME 268
Query: 321 EVIKVTNDEAVNMARRLALEEGLLV 345
EV+ V+++E+VNMAR LAL+EGL+V
Sbjct: 269 EVLMVSSEESVNMARELALKEGLMV 293
|
|
| UNIPROTKB|Q43153 CYSC "Bifunctional L-3-cyanoalanine synthase/cysteine synthase, mitochondrial" [Spinacia oleracea (taxid:3562)] | Back alignment and assigned GO terms |
|---|
Score = 728 (261.3 bits), Expect = 5.3e-72, P = 5.3e-72
Identities = 138/267 (51%), Positives = 196/267 (73%)
Query: 89 FHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEE 148
F G NI +V+QLIGRTP+VYL+K++EG +A K E M+P SVKDR +MI DAE+
Sbjct: 44 FTGTNIKTNVSQLIGRTPLVYLSKISEGSGAYIAVKQEMMQPTASVKDRPALAMIEDAEK 103
Query: 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208
G I+PGKTVL+EPT+GN G+ +AF+AA+KGYK+++TMP+ T++ERR+++RAFGA++ILT
Sbjct: 104 KGLISPGKTVLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSMERRVVMRAFGADLILT 163
Query: 209 DPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAA 268
DP+KG+ G + KA +++ +TP+ +M QQF+N AN ++HF++TGPEIWEDT G VDIFV
Sbjct: 164 DPDKGMGGTVKKANQLLDSTPDGFMLQQFNNPANTQVHFETTGPEIWEDTQGKVDIFVMG 223
Query: 269 XXXXXXXXXXXRFLKMMNKEIKVVGVEPAERSV----------ISGENAGYVPSILDVQL 318
R+LK N +K+ GVEPAE ++ I+G G+ P ILD+ +
Sbjct: 224 IGSGGTVSGVGRYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGFKPEILDMDV 283
Query: 319 LDEVIKVTNDEAVNMARRLALEEGLLV 345
+D V++V +D+AV MAR+LAL+EGLLV
Sbjct: 284 MDAVLEVKSDDAVKMARQLALQEGLLV 310
|
|
| TAIR|locus:2114804 CYSD1 "cysteine synthase D1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
Identities = 144/263 (54%), Positives = 185/263 (70%)
Query: 93 NIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDI 152
+I +D TQLIG TPMVYLN + +GCV +AAKLE MEPC SVK+RI Y MI DAE+ G I
Sbjct: 7 SIKDDATQLIGNTPMVYLNNIVDGCVARIAAKLEMMEPCSSVKERIAYGMIKDAEDKGLI 66
Query: 153 TPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEK 212
TPGK+ L+E T+GNTG+G+AF+ A KGYK+++TMP+S +LER+I+L A GAE+ LTDP K
Sbjct: 67 TPGKSTLIEATSGNTGIGLAFIGAAKGYKVVLTMPSSMSLERKIILLALGAEVHLTDPSK 126
Query: 213 GLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAXXXX 272
G++G +DKAEEI P++ M +QF N +N + H+ +TGPEIW D+ G VDI VA
Sbjct: 127 GVQGIIDKAEEICSKNPDSIMLEQFKNPSNPQTHYRTTGPEIWRDSAGEVDILVAGVGTG 186
Query: 273 XXXXXXXRFLKMMNKEIKVVGVEPAERSVISGEN----------AGYVPSILDVQLLDEV 322
RFLK NK+ KV GVEP E +VISG AG +P LD +LDEV
Sbjct: 187 GTLSGSGRFLKEKNKDFKVYGVEPTESAVISGGKPGTHLIQGIGAGLIPDNLDFNVLDEV 246
Query: 323 IKVTNDEAVNMARRLALEEGLLV 345
I+VT+ EA+ A+ LAL+EGLLV
Sbjct: 247 IQVTSVEAIETAKLLALKEGLLV 269
|
|
| UNIPROTKB|Q1KLZ1 CAS2 "L-3-cyanoalanine synthase 2, mitochondrial" [Malus x domestica (taxid:3750)] | Back alignment and assigned GO terms |
|---|
Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
Identities = 140/268 (52%), Positives = 190/268 (70%)
Query: 88 DFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAE 147
D I V+QLIGRTP+VYLNKVTEGC +A K E +P S+KDR SMI DAE
Sbjct: 50 DLPATQIKTQVSQLIGRTPIVYLNKVTEGCGAFIAVKQEMFQPTASIKDRPALSMINDAE 109
Query: 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207
E G ITPG+T L+EPT+GN G+ +AF+AA+KGYK+++TMP+ T+LERR+ +R FGA++IL
Sbjct: 110 EKGLITPGETTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVCMRCFGADLIL 169
Query: 208 TDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVA 267
TDP KG+ G + KA +++ +TPNA+M QQF N AN K+HF++TGPEIWEDT G VDIFV
Sbjct: 170 TDPTKGMGGTVKKAYDLLESTPNAFMLQQFSNPANTKVHFETTGPEIWEDTNGQVDIFVM 229
Query: 268 AXXXXXXXXXXXRFLKMMNKEIKVVGVEPAERSV----------ISGENAGYVPSILDVQ 317
++LK N +++ GVEPAE +V I+G G+ P ILD+
Sbjct: 230 GIGSGGTVSGVGQYLKSKNPNVQIYGVEPAESNVLNGGKPGPHSITGNGVGFKPDILDMD 289
Query: 318 LLDEVIKVTNDEAVNMARRLALEEGLLV 345
+++ VI+V +++AVNMAR+LAL+EGL+V
Sbjct: 290 MMERVIEVRSEDAVNMARQLALKEGLMV 317
|
|
| TAIR|locus:2082837 CYSC1 "cysteine synthase C1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 708 (254.3 bits), Expect = 7.0e-70, P = 7.0e-70
Identities = 136/268 (50%), Positives = 190/268 (70%)
Query: 88 DFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAE 147
DF N D + LIG+TP+V+LNKVTEGC VAAK E +P S+KDR +MI DAE
Sbjct: 43 DFPSTNAKRDASLLIGKTPLVFLNKVTEGCEAYVAAKQEHFQPTCSIKDRPAIAMIADAE 102
Query: 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207
+ I PGKT L+EPT+GN G+ +AF+AA+KGY++I+TMP+ T+LERR+ +R+FGAE++L
Sbjct: 103 KKKLIIPGKTTLIEPTSGNMGISLAFMAAMKGYRIIMTMPSYTSLERRVTMRSFGAELVL 162
Query: 208 TDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVA 267
TDP KG+ G + KA +++ +TP+A+M QQF N AN +IHFD+TGPEIWEDTLG VDIFV
Sbjct: 163 TDPAKGMGGTVKKAYDLLDSTPDAFMCQQFANPANTQIHFDTTGPEIWEDTLGNVDIFVM 222
Query: 268 AXXXXXXXXXXXRFLKMMNKEIKVVGVEPAERSV----------ISGENAGYVPSILDVQ 317
R+LK N +K+ GVEPAE ++ I+G G+ P ILD+
Sbjct: 223 GIGSGGTVSGVGRYLKSKNPNVKIYGVEPAESNILNGGKPGPHAITGNGVGFKPEILDMD 282
Query: 318 LLDEVIKVTNDEAVNMARRLALEEGLLV 345
+++ V++V++++A+ MAR LAL+EGL+V
Sbjct: 283 VMESVLEVSSEDAIKMARELALKEGLMV 310
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| P0A535 | CYSK_MYCBO | 2, ., 5, ., 1, ., 4, 7 | 0.5075 | 0.7291 | 0.8161 | yes | no |
| P0A534 | CYSK_MYCTU | 2, ., 5, ., 1, ., 4, 7 | 0.5075 | 0.7291 | 0.8161 | yes | no |
| O32978 | CYSK_MYCLE | 2, ., 5, ., 1, ., 4, 7 | 0.5227 | 0.7291 | 0.8161 | yes | no |
| O22682 | CYSK4_ARATH | 2, ., 5, ., 1, ., 4, 7 | 0.6676 | 0.9567 | 0.8217 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00033683001 | RecName- Full=Cysteine synthase; EC=2.5.1.47; (390 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| GSVIVG00016589001 | SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (290 aa) | • | • | • | • | 0.939 | |||||
| GSVIVG00000669001 | SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (403 aa) | • | • | • | 0.939 | ||||||
| GSVIVG00024596001 | SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (668 aa) | • | • | • | 0.934 | ||||||
| GSVIVG00008446001 | SubName- Full=Chromosome undetermined scaffold_1460, whole genome shotgun sequence; (261 aa) | • | • | • | 0.928 | ||||||
| GSVIVG00011752001 | SubName- Full=Chromosome undetermined scaffold_334, whole genome shotgun sequence; (307 aa) | • | • | • | 0.920 | ||||||
| GSVIVG00033361001 | RecName- Full=Cysteine synthase; EC=2.5.1.47; (373 aa) | • | • | • | • | 0.920 | |||||
| GSVIVG00033340001 | SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (304 aa) | • | • | 0.916 | |||||||
| GSVIVG00026889001 | RecName- Full=Cysteine synthase; EC=2.5.1.47; (371 aa) | • | • | • | • | 0.907 | |||||
| GSVIVG00031101001 | RecName- Full=Cysteine synthase; EC=2.5.1.47; (251 aa) | • | • | • | • | 0.906 | |||||
| GSVIVG00031109001 | RecName- Full=Cysteine synthase; EC=2.5.1.47; (323 aa) | • | • | • | • | 0.905 | |||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 347 | |||
| PLN02565 | 322 | PLN02565, PLN02565, cysteine synthase | 1e-130 | |
| TIGR01136 | 299 | TIGR01136, cysKM, cysteine synthase | 1e-123 | |
| PLN02556 | 368 | PLN02556, PLN02556, cysteine synthase/L-3-cyanoala | 1e-121 | |
| PLN03013 | 429 | PLN03013, PLN03013, cysteine synthase | 1e-118 | |
| TIGR01139 | 298 | TIGR01139, cysK, cysteine synthase A | 1e-118 | |
| cd01561 | 291 | cd01561, CBS_like, CBS_like: This subgroup include | 1e-112 | |
| PLN00011 | 323 | PLN00011, PLN00011, cysteine synthase | 1e-112 | |
| COG0031 | 300 | COG0031, CysK, Cysteine synthase [Amino acid trans | 1e-110 | |
| PRK10717 | 330 | PRK10717, PRK10717, cysteine synthase A; Provision | 4e-86 | |
| PRK11761 | 296 | PRK11761, cysM, cysteine synthase B; Provisional | 3e-85 | |
| TIGR01137 | 454 | TIGR01137, cysta_beta, cystathionine beta-synthase | 4e-78 | |
| TIGR01138 | 290 | TIGR01138, cysM, cysteine synthase B | 2e-77 | |
| cd00640 | 244 | cd00640, Trp-synth-beta_II, Tryptophan synthase be | 8e-68 | |
| TIGR03945 | 304 | TIGR03945, PLP_SbnA_fam, 2,3-diaminopropionate bio | 2e-57 | |
| pfam00291 | 295 | pfam00291, PALP, Pyridoxal-phosphate dependent enz | 2e-52 | |
| PLN02356 | 423 | PLN02356, PLN02356, phosphateglycerate kinase | 7e-29 | |
| COG1171 | 347 | COG1171, IlvA, Threonine dehydratase [Amino acid t | 4e-20 | |
| cd01562 | 304 | cd01562, Thr-dehyd, Threonine dehydratase: The fir | 2e-16 | |
| TIGR01127 | 380 | TIGR01127, ilvA_1Cterm, threonine ammonia-lyase, m | 9e-14 | |
| PRK08638 | 333 | PRK08638, PRK08638, threonine dehydratase; Validat | 1e-11 | |
| cd01563 | 324 | cd01563, Thr-synth_1, Threonine synthase is a pyri | 2e-11 | |
| TIGR02079 | 409 | TIGR02079, THD1, threonine dehydratase | 9e-10 | |
| PRK06382 | 406 | PRK06382, PRK06382, threonine dehydratase; Provisi | 9e-10 | |
| PRK08639 | 420 | PRK08639, PRK08639, threonine dehydratase; Validat | 4e-09 | |
| TIGR01124 | 499 | TIGR01124, ilvA_2Cterm, threonine ammonia-lyase, b | 6e-09 | |
| PRK08198 | 404 | PRK08198, PRK08198, threonine dehydratase; Provisi | 1e-08 | |
| COG0498 | 411 | COG0498, ThrC, Threonine synthase [Amino acid tran | 4e-08 | |
| PRK08526 | 403 | PRK08526, PRK08526, threonine dehydratase; Provisi | 2e-07 | |
| PRK12483 | 521 | PRK12483, PRK12483, threonine dehydratase; Reviewe | 3e-07 | |
| PRK09224 | 504 | PRK09224, PRK09224, threonine dehydratase; Reviewe | 5e-07 | |
| PRK06815 | 317 | PRK06815, PRK06815, hypothetical protein; Provisio | 1e-06 | |
| PRK08246 | 310 | PRK08246, PRK08246, threonine dehydratase; Provisi | 5e-06 | |
| PRK05638 | 442 | PRK05638, PRK05638, threonine synthase; Validated | 1e-05 | |
| PRK06721 | 352 | PRK06721, PRK06721, threonine synthase; Reviewed | 2e-05 | |
| TIGR03528 | 396 | TIGR03528, 2_3_DAP_am_ly, diaminopropionate ammoni | 4e-05 | |
| PRK06381 | 319 | PRK06381, PRK06381, threonine synthase; Validated | 5e-05 | |
| TIGR02991 | 317 | TIGR02991, ectoine_eutB, ectoine utilization prote | 8e-05 | |
| PRK06608 | 338 | PRK06608, PRK06608, threonine dehydratase; Provisi | 8e-05 | |
| PLN02550 | 591 | PLN02550, PLN02550, threonine dehydratase | 1e-04 | |
| TIGR00260 | 328 | TIGR00260, thrC, threonine synthase | 2e-04 | |
| COG0604 | 326 | COG0604, Qor, NADPH:quinone reductase and related | 4e-04 | |
| TIGR01747 | 376 | TIGR01747, diampropi_NH3ly, diaminopropionate ammo | 4e-04 | |
| PRK08329 | 347 | PRK08329, PRK08329, threonine synthase; Validated | 7e-04 | |
| PRK06260 | 397 | PRK06260, PRK06260, threonine synthase; Validated | 7e-04 | |
| PRK08206 | 399 | PRK08206, PRK08206, diaminopropionate ammonia-lyas | 0.002 | |
| cd05188 | 271 | cd05188, MDR, Medium chain reductase/dehydrogenase | 0.002 | |
| PRK08197 | 394 | PRK08197, PRK08197, threonine synthase; Validated | 0.002 | |
| PRK07048 | 321 | PRK07048, PRK07048, serine/threonine dehydratase; | 0.003 |
| >gnl|CDD|166206 PLN02565, PLN02565, cysteine synthase | Back alignment and domain information |
|---|
Score = 375 bits (963), Expect = e-130
Identities = 168/262 (64%), Positives = 214/262 (81%), Gaps = 10/262 (3%)
Query: 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDIT 153
IA+DVT+LIG+TP+VYLN V +GCV +AAKLE MEPC SVKDRIGYSMITDAEE G I
Sbjct: 5 IAKDVTELIGKTPLVYLNNVVDGCVARIAAKLEMMEPCSSVKDRIGYSMITDAEEKGLIK 64
Query: 154 PGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKG 213
PG++VL+EPT+GNTG+G+AF+AA KGYKLI+TMPAS +LERRI+L AFGAE++LTDP KG
Sbjct: 65 PGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPASMSLERRIILLAFGAELVLTDPAKG 124
Query: 214 LRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGG 273
++GA+ KAEEI+ TPN+Y+ QQF+N AN KIH+++TGPEIW+ T G VD FV+ IGTGG
Sbjct: 125 MKGAVQKAEEILAKTPNSYILQQFENPANPKIHYETTGPEIWKGTGGKVDAFVSGIGTGG 184
Query: 274 TITGTGRFLKMMNKEIKVVGVEPAERSVISGEN----------AGYVPSILDVQLLDEVI 323
TITG G++LK N +IK+ GVEP E +V+SG AG++P +LDV LLDEV+
Sbjct: 185 TITGAGKYLKEQNPDIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVDLLDEVV 244
Query: 324 KVTNDEAVNMARRLALEEGLLV 345
+V++DEA+ A+ LAL+EGLLV
Sbjct: 245 QVSSDEAIETAKLLALKEGLLV 266
|
Length = 322 |
| >gnl|CDD|233286 TIGR01136, cysKM, cysteine synthase | Back alignment and domain information |
|---|
Score = 355 bits (914), Expect = e-123
Identities = 142/258 (55%), Positives = 183/258 (70%), Gaps = 11/258 (4%)
Query: 98 VTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKT 157
+ +LIG TP+V LN++ GC V AKLE P SVKDRI SMI DAE+ G + PG T
Sbjct: 1 IEELIGNTPLVRLNRLAPGCDARVLAKLEGRNPSGSVKDRIALSMIEDAEKRGLLKPGDT 60
Query: 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGA 217
++E T+GNTG+ +A VAA KGYKLI+TMP + +LERR LLRA+GAE+ILT E+G++GA
Sbjct: 61 -IIEATSGNTGIALAMVAAAKGYKLILTMPETMSLERRKLLRAYGAELILTPAEEGMKGA 119
Query: 218 LDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITG 277
+DKAEE+ T M QF+N AN + H+ +TGPEIW DT G +D FVA +GTGGTITG
Sbjct: 120 IDKAEELAAETNKYVMLDQFENPANPEAHYKTTGPEIWRDTDGRIDHFVAGVGTGGTITG 179
Query: 278 TGRFLKMMNKEIKVVGVEPAERSVISGEN----------AGYVPSILDVQLLDEVIKVTN 327
GR+LK N IK+V VEPAE V+SG AG++P ILD+ L+DEVI V++
Sbjct: 180 VGRYLKEQNPNIKIVAVEPAESPVLSGGEPGPHKIQGIGAGFIPKILDLSLIDEVITVSD 239
Query: 328 DEAVNMARRLALEEGLLV 345
++A+ ARRLA EEG+LV
Sbjct: 240 EDAIETARRLAREEGILV 257
|
This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff [Amino acid biosynthesis, Serine family]. Length = 299 |
| >gnl|CDD|178171 PLN02556, PLN02556, cysteine synthase/L-3-cyanoalanine synthase | Back alignment and domain information |
|---|
Score = 353 bits (907), Expect = e-121
Identities = 156/306 (50%), Positives = 218/306 (71%), Gaps = 14/306 (4%)
Query: 50 RRRILPIVASAKAGAAASSSSSSLYATSTREIEKEEGNDFHGVNIAEDVTQLIGRTPMVY 109
+RR +S S+ S +A R++ K D G I D +QLIG+TP+VY
Sbjct: 9 KRRSSIPPSSHTLRKLFSTVGSPSFAQRLRDLPK----DLPGTKIKTDASQLIGKTPLVY 64
Query: 110 LNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGL 169
LNKVTEGC +AAK E +P S+KDR +MI DAE+ ITPGKT L+EPT+GN G+
Sbjct: 65 LNKVTEGCGAYIAAKQEMFQPTSSIKDRPALAMIEDAEKKNLITPGKTTLIEPTSGNMGI 124
Query: 170 GIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTP 229
+AF+AA+KGYK+I+TMP+ T+LERR+ +RAFGAE++LTDP KG+ G + KA E++ +TP
Sbjct: 125 SLAFMAAMKGYKMILTMPSYTSLERRVTMRAFGAELVLTDPTKGMGGTVKKAYELLESTP 184
Query: 230 NAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEI 289
+A+M QQF N AN ++HF++TGPEIWEDTLG VDIFV IG+GGT++G G++LK N +
Sbjct: 185 DAFMLQQFSNPANTQVHFETTGPEIWEDTLGQVDIFVMGIGSGGTVSGVGKYLKSKNPNV 244
Query: 290 KVVGVEPAERSV----------ISGENAGYVPSILDVQLLDEVIKVTNDEAVNMARRLAL 339
K+ GVEPAE +V I+G G+ P ILD+ ++++V++V++++AVNMAR LAL
Sbjct: 245 KIYGVEPAESNVLNGGKPGPHHITGNGVGFKPDILDMDVMEKVLEVSSEDAVNMARELAL 304
Query: 340 EEGLLV 345
+EGL+V
Sbjct: 305 KEGLMV 310
|
Length = 368 |
| >gnl|CDD|178587 PLN03013, PLN03013, cysteine synthase | Back alignment and domain information |
|---|
Score = 348 bits (894), Expect = e-118
Identities = 182/328 (55%), Positives = 245/328 (74%), Gaps = 25/328 (7%)
Query: 41 SSINGALATRRRILPIVASAKAGAAASSS------SSSLYATSTRE-------IEKEEGN 87
SS + + R R P ++S +A+ S S S S R+ +++E G
Sbjct: 49 SSSSSSTLRRFRCSPEISSLSFSSASDFSLAMKRQSRSFADGSERDPSVVCEAVKRETGP 108
Query: 88 DFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAE 147
D G+NIA++V+QLIG+TPMVYLN + +GCV N+AAKLE MEPC SVKDRIGYSM+TDAE
Sbjct: 109 D--GLNIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAE 166
Query: 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207
+ G I+PGK+VLVEPT+GNTG+G+AF+AA +GY+LI+TMPAS ++ERR+LL+AFGAE++L
Sbjct: 167 QKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVL 226
Query: 208 TDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVA 267
TDP KG+ GA+ KAEEI+ NTP+AYM QQFDN AN KIH+++TGPEIW+DT G VDIFVA
Sbjct: 227 TDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVA 286
Query: 268 AIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGEN----------AGYVPSILDVQ 317
IGTGGTITG GRF+K N + +V+GVEP E ++SG AG++P LD +
Sbjct: 287 GIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFIPKNLDQK 346
Query: 318 LLDEVIKVTNDEAVNMARRLALEEGLLV 345
++DEVI ++++EA+ A++LAL+EGL+V
Sbjct: 347 IMDEVIAISSEEAIETAKQLALKEGLMV 374
|
Length = 429 |
| >gnl|CDD|233288 TIGR01139, cysK, cysteine synthase A | Back alignment and domain information |
|---|
Score = 342 bits (878), Expect = e-118
Identities = 141/259 (54%), Positives = 186/259 (71%), Gaps = 13/259 (5%)
Query: 98 VTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKT 157
+++LIG TP+V LN++ EGC NV KLE P SVKDRI +MI DAE+ G + PGKT
Sbjct: 1 ISELIGNTPLVRLNRI-EGCNANVFVKLEGRNPSGSVKDRIALNMIWDAEKRGLLKPGKT 59
Query: 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGA 217
+VEPT+GNTG+ +A VAA +GYKLI+TMP + ++ERR LL+A+GAE++LT +G++GA
Sbjct: 60 -IVEPTSGNTGIALAMVAAARGYKLILTMPETMSIERRKLLKAYGAELVLTPGAEGMKGA 118
Query: 218 LDKAEEIVLNTPNAY-MFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTIT 276
+ KAEEI +TPN+Y M QQF+N AN +IH +TGPEIW DT G +D FVA +GTGGTIT
Sbjct: 119 IAKAEEIAASTPNSYFMLQQFENPANPEIHRKTTGPEIWRDTDGKLDAFVAGVGTGGTIT 178
Query: 277 GTGRFLKMMNKEIKVVGVEPAERSVISGEN----------AGYVPSILDVQLLDEVIKVT 326
G G LK IK+V VEPAE V+SG AG++P L+ ++DEVI V+
Sbjct: 179 GVGEVLKEQKPNIKIVAVEPAESPVLSGGKPGPHKIQGIGAGFIPKNLNRSVIDEVITVS 238
Query: 327 NDEAVNMARRLALEEGLLV 345
++EA+ ARRLA EEG+LV
Sbjct: 239 DEEAIETARRLAAEEGILV 257
|
This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate [Amino acid biosynthesis, Serine family]. Length = 298 |
| >gnl|CDD|107204 cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase | Back alignment and domain information |
|---|
Score = 327 bits (840), Expect = e-112
Identities = 127/255 (49%), Positives = 171/255 (67%), Gaps = 13/255 (5%)
Query: 103 GRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEP 162
G TP+V LN+++ G + AKLE P SVKDRI MI DAE+ G + PG T+ +EP
Sbjct: 1 GNTPLVRLNRLSPGTGAEIYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPGTTI-IEP 59
Query: 163 TTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEK--GLRGALDK 220
T+GNTG+G+A VAA KGY+ I+ MP + + E+R LLRA GAE+ILT + G++GA+ K
Sbjct: 60 TSGNTGIGLAMVAAAKGYRFIIVMPETMSEEKRKLLRALGAEVILTPEAEADGMKGAIAK 119
Query: 221 AEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGR 280
A E+ TPNA+ QF+N AN + H+++T PEIWE G VD FVA +GTGGTITG R
Sbjct: 120 ARELAAETPNAFWLNQFENPANPEAHYETTAPEIWEQLDGKVDAFVAGVGTGGTITGVAR 179
Query: 281 FLKMMNKEIKVVGVEPAERSVISGEN----------AGYVPSILDVQLLDEVIKVTNDEA 330
+LK N +++VGV+P + SG AG++P LD L+DEV++V+++EA
Sbjct: 180 YLKEKNPNVRIVGVDPVGSVLFSGGPPGPHKIEGIGAGFIPENLDRSLIDEVVRVSDEEA 239
Query: 331 VNMARRLALEEGLLV 345
MARRLA EEGLLV
Sbjct: 240 FAMARRLAREEGLLV 254
|
CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine. Length = 291 |
| >gnl|CDD|177651 PLN00011, PLN00011, cysteine synthase | Back alignment and domain information |
|---|
Score = 328 bits (841), Expect = e-112
Identities = 151/262 (57%), Positives = 194/262 (74%), Gaps = 10/262 (3%)
Query: 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDIT 153
I DVT+LIG TPMVYLN + +GCV +AAKLE MEPC SVKDRI YSMI DAE+ G IT
Sbjct: 7 IKNDVTELIGNTPMVYLNNIVDGCVARIAAKLEMMEPCSSVKDRIAYSMIKDAEDKGLIT 66
Query: 154 PGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKG 213
PGK+ L+E T GNTG+G+A + A +GYK+I+ MP++ +LERRI+LRA GAE+ LTD G
Sbjct: 67 PGKSTLIEATAGNTGIGLACIGAARGYKVILVMPSTMSLERRIILRALGAEVHLTDQSIG 126
Query: 214 LRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGG 273
L+G L+KAEEI+ TP Y+ QQF+N AN +IH+ +TGPEIW D+ G VDI VA +GTGG
Sbjct: 127 LKGMLEKAEEILSKTPGGYIPQQFENPANPEIHYRTTGPEIWRDSAGKVDILVAGVGTGG 186
Query: 274 TITGTGRFLKMMNKEIKVVGVEPAERSVISGEN----------AGYVPSILDVQLLDEVI 323
T TG G+FLK NK+IKV VEP E +V+SG +G +P LD+ ++DE+I
Sbjct: 187 TATGVGKFLKEKNKDIKVCVVEPVESAVLSGGQPGPHLIQGIGSGIIPFNLDLTIVDEII 246
Query: 324 KVTNDEAVNMARRLALEEGLLV 345
+VT +EA+ A+ LAL+EGLLV
Sbjct: 247 QVTGEEAIETAKLLALKEGLLV 268
|
Length = 323 |
| >gnl|CDD|223110 COG0031, CysK, Cysteine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 324 bits (832), Expect = e-110
Identities = 131/263 (49%), Positives = 177/263 (67%), Gaps = 12/263 (4%)
Query: 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDIT 153
I E + LIG TP+V LN+++ G + AKLES P SVKDRI MI DAE+ G +
Sbjct: 1 IYESILDLIGNTPLVRLNRLSPGTGVEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLLK 60
Query: 154 PGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKG 213
PG T+ VE T+GNTG+ +A VAA KGY+LI+ MP + + ERR LLRA GAE+ILT G
Sbjct: 61 PGGTI-VEATSGNTGIALAMVAAAKGYRLIIVMPETMSQERRKLLRALGAEVILTPGAPG 119
Query: 214 -LRGALDKAEEIVLNTPN-AYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGT 271
++GA+++A+E+ P A QF+N AN + H+++TGPEIW+ T G VD FVA +GT
Sbjct: 120 NMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTGPEIWQQTDGKVDAFVAGVGT 179
Query: 272 GGTITGTGRFLKMMNKEIKVVGVEPAERSVISGEN---------AGYVPSILDVQLLDEV 322
GGTITG R+LK N +++V V+P ++SG AG+VP LD+ L+DEV
Sbjct: 180 GGTITGVARYLKERNPNVRIVAVDPEGSVLLSGGEGPHKIEGIGAGFVPENLDLDLIDEV 239
Query: 323 IKVTNDEAVNMARRLALEEGLLV 345
I+V+++EA+ ARRLA EEGLLV
Sbjct: 240 IRVSDEEAIATARRLAREEGLLV 262
|
Length = 300 |
| >gnl|CDD|182672 PRK10717, PRK10717, cysteine synthase A; Provisional | Back alignment and domain information |
|---|
Score = 262 bits (672), Expect = 4e-86
Identities = 113/276 (40%), Positives = 167/276 (60%), Gaps = 24/276 (8%)
Query: 93 NIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDI 152
I EDV+ IG TP++ LN+ +E + K E + P SVKDR ++I DAE+ G +
Sbjct: 2 KIFEDVSDTIGNTPLIRLNRASEATGCEILGKAEFLNPGGSVKDRAALNIIWDAEKRGLL 61
Query: 153 TPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT---- 208
PG T+ VE T GNTG+G+A VAA +GYK ++ MP + + E++ LLRA GAE++L
Sbjct: 62 KPGGTI-VEGTAGNTGIGLALVAAARGYKTVIVMPETQSQEKKDLLRALGAELVLVPAAP 120
Query: 209 --DPEKGLRGALDKAEEIVLNTPNAYMF-QQFDNMANLKIHFDSTGPEIWEDTLGCVDIF 265
+P ++GA AEE+V + PN ++ QFDN AN + H+++TGPEIWE T G VD F
Sbjct: 121 YANPNNYVKGAGRLAEELVASEPNGAIWANQFDNPANREAHYETTGPEIWEQTDGKVDGF 180
Query: 266 VAAIGTGGTITGTGRFLKMMNKEIKVVGVEP---------------AE-RSVISGENAGY 309
V A+GTGGT+ G R+LK N ++K+V +P AE S+ G G
Sbjct: 181 VCAVGTGGTLAGVSRYLKETNPKVKIVLADPTGSALYSYYKTGELKAEGSSITEGIGQGR 240
Query: 310 VPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLV 345
+ + L+ +D+ I++ ++EA++ A RL EEGL +
Sbjct: 241 ITANLEGAPIDDAIRIPDEEALSTAYRLLEEEGLCL 276
|
Length = 330 |
| >gnl|CDD|236972 PRK11761, cysM, cysteine synthase B; Provisional | Back alignment and domain information |
|---|
Score = 259 bits (663), Expect = 3e-85
Identities = 106/247 (42%), Positives = 149/247 (60%), Gaps = 5/247 (2%)
Query: 100 QLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVL 159
IG TP+V L ++ + AKLE P SVKDR SMI AE+ G+I PG T L
Sbjct: 8 DTIGNTPLVKLQRLPPDRGNTILAKLEGNNPAGSVKDRPALSMIVQAEKRGEIKPGDT-L 66
Query: 160 VEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALD 219
+E T+GNTG+ +A +AA+KGY++ + MP + + ERR +RA+GAE+IL E+G+ GA D
Sbjct: 67 IEATSGNTGIALAMIAAIKGYRMKLIMPENMSQERRAAMRAYGAELILVPKEQGMEGARD 126
Query: 220 KAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTG 279
A ++ + QF N N H+++TGPEIW T G + FV+++GT GTI G
Sbjct: 127 LALQMQAEG-EGKVLDQFANPDNPLAHYETTGPEIWRQTEGRITHFVSSMGTTGTIMGVS 185
Query: 280 RFLKMMNKEIKVVGVEPAERSVISGEN---AGYVPSILDVQLLDEVIKVTNDEAVNMARR 336
R+LK N +++VG++P E S I G Y+P I D +D V+ V+ EA N RR
Sbjct: 186 RYLKEQNPAVQIVGLQPEEGSSIPGIRRWPEEYLPKIFDASRVDRVLDVSQQEAENTMRR 245
Query: 337 LALEEGL 343
LA EEG+
Sbjct: 246 LAREEGI 252
|
Length = 296 |
| >gnl|CDD|233287 TIGR01137, cysta_beta, cystathionine beta-synthase | Back alignment and domain information |
|---|
Score = 246 bits (629), Expect = 4e-78
Identities = 119/275 (43%), Positives = 167/275 (60%), Gaps = 29/275 (10%)
Query: 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDIT 153
I +++ LIG TP+V LNKV++G + AK E P SVKDRI MI DAE SG +
Sbjct: 1 IRDNIIDLIGNTPLVRLNKVSKGIKCELLAKCEFFNPGGSVKDRIALRMIEDAEASGRLK 60
Query: 154 PGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT----- 208
PG T ++EPT+GNTG+G+A VAA+KGYK I+ +P + E+ +L+A GAEI+ T
Sbjct: 61 PGDT-IIEPTSGNTGIGLALVAAIKGYKCIIVLPEKMSNEKVDVLKALGAEIVRTPTAAA 119
Query: 209 --DPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFV 266
PE + A+ +V P A++ Q++N +N H+D TGPEI E G +D+FV
Sbjct: 120 FDSPES----HIGVAKRLVREIPGAHILDQYNNPSNPLAHYDGTGPEILEQCEGKLDMFV 175
Query: 267 AAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG--------------ENAGY--V 310
A GTGGTITG R+LK N + ++VG +P E S+++ E GY +
Sbjct: 176 AGAGTGGTITGIARYLKESNPKCRIVGADP-EGSILAQPENLNKTGRTPYKVEGIGYDFI 234
Query: 311 PSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLV 345
P++LD +++DE IK + E+ MARRL EEGLLV
Sbjct: 235 PTVLDRKVVDEWIKTDDKESFKMARRLIKEEGLLV 269
|
Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven [Amino acid biosynthesis, Serine family]. Length = 454 |
| >gnl|CDD|130208 TIGR01138, cysM, cysteine synthase B | Back alignment and domain information |
|---|
Score = 239 bits (610), Expect = 2e-77
Identities = 105/251 (41%), Positives = 151/251 (60%), Gaps = 5/251 (1%)
Query: 98 VTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKT 157
+ Q +G TP+V L ++ V KLE P SVKDR SMI +AE+ G+I PG
Sbjct: 2 IEQTVGNTPLVRLQRMGPENGSEVWLKLEGNNPAGSVKDRPALSMIVEAEKRGEIKPGD- 60
Query: 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGA 217
VL+E T+GNTG+ +A +AA+KGY++ + MP + + ER+ +RA+GAE+IL E+G+ GA
Sbjct: 61 VLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERKAAMRAYGAELILVTKEEGMEGA 120
Query: 218 LDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITG 277
D A E+ + QF+N N H+ STGPEIW+ T G + FV+++GT GTI G
Sbjct: 121 RDLALELANRGEGKLL-DQFNNPDNPYAHYTSTGPEIWQQTGGRITHFVSSMGTTGTIMG 179
Query: 278 TGRFLKMMNKEIKVVGVEPAERSVISGEN---AGYVPSILDVQLLDEVIKVTNDEAVNMA 334
RFLK N +++VG++P E S I G Y+P I D L+D V+ + +A N
Sbjct: 180 VSRFLKEQNPPVQIVGLQPEEGSSIPGIRRWPTEYLPGIFDASLVDRVLDIHQRDAENTM 239
Query: 335 RRLALEEGLLV 345
R LA+ EG+
Sbjct: 240 RELAVREGIFC 250
|
CysM differs from CysK in that it can also use thiosulfate instead of sulfide, to produce cysteine thiosulfonate instead of cysteine. Alternate name: O-acetylserine (thiol)-lyase [Amino acid biosynthesis, Serine family]. Length = 290 |
| >gnl|CDD|107202 cd00640, Trp-synth-beta_II, Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions | Back alignment and domain information |
|---|
Score = 212 bits (543), Expect = 8e-68
Identities = 86/242 (35%), Positives = 121/242 (50%), Gaps = 30/242 (12%)
Query: 105 TPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTT 164
TP+V L ++++ N+ KLE + P S KDR ++I AEE G + K V++E T
Sbjct: 1 TPLVRLKRLSKLGGANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKL--PKGVIIESTG 58
Query: 165 GNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEI 224
GNTG+ +A AA G K + MP + E+ +RA GAE++L A+ A+E+
Sbjct: 59 GNTGIALAAAAARLGLKCTIVMPEGASPEKVAQMRALGAEVVLVPG--DFDDAIALAKEL 116
Query: 225 VLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGC-VDIFVAAIGTGGTITGTGRFLK 283
P AY QFDN AN+ + G EI E G D V +G GG I G R LK
Sbjct: 117 AEEDPGAYYVNQFDNPANIAGQG-TIGLEILEQLGGQKPDAVVVPVGGGGNIAGIARALK 175
Query: 284 MMNKEIKVVGVEPAERSVISGENAGYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGL 343
+ +KV+GVEP EV+ V+++EA+ R LA EEG+
Sbjct: 176 ELLPNVKVIGVEP------------------------EVVTVSDEEALEAIRLLAREEGI 211
Query: 344 LV 345
LV
Sbjct: 212 LV 213
|
This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehyd catalyzes the conversion of L- or D-serine to pyruvate and ammonia. Thr-dehyd is active as a homodimer and catalyzes the conversion of L-threonine to 2-oxobutanoate and ammonia. DAL is also a homodimer and catalyzes the alpha, beta-elimination reaction of both L- and D-alpha, beta-diaminopropionate to form pyruvate and ammonia. Thr-synth catalyzes the formation of threonine and inorganic phosphate from O-phosphohomoserine. Length = 244 |
| >gnl|CDD|234409 TIGR03945, PLP_SbnA_fam, 2,3-diaminopropionate biosynthesis protein SbnA | Back alignment and domain information |
|---|
Score = 187 bits (478), Expect = 2e-57
Identities = 87/263 (33%), Positives = 130/263 (49%), Gaps = 19/263 (7%)
Query: 98 VTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKT 157
+ LIG TP+V L ++ + AKLE P S+KDR ++ A + G ITPG T
Sbjct: 1 ILSLIGNTPLVKLERLFPDAPFRLFAKLEGFNPGGSIKDRPALYILEAAIKRGRITPG-T 59
Query: 158 VLVEPTTGNTGLGIAFVAAVKGYKLI-VTMPASTNLERRILLRAFGAEIILT---DPEKG 213
++E ++GN G+ +A + A KG + I V P + ++ LRA+GAE+ D G
Sbjct: 60 TIIESSSGNLGIALAMICAYKGLRFICVVDPNISPQNLKL-LRAYGAEVEKVTEPDETGG 118
Query: 214 LRGA-LDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTG 272
G + + E++ + P+AY Q+ N N + H+ TG EI +D + T
Sbjct: 119 YLGTRIARVRELLASIPDAYWPNQYANPDNPRAHYHGTGREIARA-FPPLDYLFVGVSTT 177
Query: 273 GTITGTGRFLKMMNKEIKVVGVEPAERSV----------ISGENAGYVPSILDVQLLDEV 322
GT+ G R L+ KV+ V+ A SV I G A VP +LD L+D+V
Sbjct: 178 GTLMGCSRRLRERGPNTKVIAVD-AVGSVIFGGPPGRRHIPGLGASVVPELLDESLIDDV 236
Query: 323 IKVTNDEAVNMARRLALEEGLLV 345
+ V + V RRLA EG+L
Sbjct: 237 VHVPEYDTVAGCRRLARREGILA 259
|
Members of this family include SbnA, a protein of the staphyloferrin B biosynthesis operon of Staphylococcus aureus. SbnA and SbnB together appear to synthesize 2,3-diaminopropionate, a precursor of certain siderophores and other secondary metabolites. SbnA is a pyridoxal phosphate-dependent enzyme [Cellular processes, Biosynthesis of natural products]. Length = 304 |
| >gnl|CDD|215840 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme | Back alignment and domain information |
|---|
Score = 175 bits (445), Expect = 2e-52
Identities = 83/273 (30%), Positives = 126/273 (46%), Gaps = 34/273 (12%)
Query: 98 VTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKT 157
++ IG TP+V L G V KLES+ P S KDR ++ A E G
Sbjct: 1 ISLGIGPTPLVRLPSPLLGA--RVYLKLESLNPTGSFKDRGAAYLLLRALERG------A 52
Query: 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL---TDPEKGL 214
+VE ++GNTG +A AA G K+ + +P + + +L+RA GAE+IL
Sbjct: 53 TVVEASSGNTGRALAAAAARLGLKVTIVVPEGASPGKLLLMRALGAEVILVVSEGDYDDA 112
Query: 215 RGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDT-LGCVDIFVAAIGTGG 273
++A E++ Q++N N+ + + G EI E G D V +G GG
Sbjct: 113 LELAEEAAELLAAYDGPIPLGQYNNP-NVIAGYKTIGLEILEQLGQGDPDAVVVPVGGGG 171
Query: 274 TITGTGRFLKMMNKEIKVVGVEPA----------------ERSVISGENAGY-VPSILDV 316
G R LK + I+V+GVEP + + I+G G + L +
Sbjct: 172 LAAGIARGLKELGPGIRVIGVEPEGAPALARSLEAGRRVPKPTTIAGLGPGIPLDGELAL 231
Query: 317 QLLDE----VIKVTNDEAVNMARRLALEEGLLV 345
+L+DE V V+++EA+ R LA EG+LV
Sbjct: 232 ELIDEYVGDVYAVSDEEALEAIRLLARREGILV 264
|
Members of this family are all pyridoxal-phosphate dependent enzymes. This family includes: serine dehydratase EC:4.2.1.13 P20132, threonine dehydratase EC:4.2.1.16, tryptophan synthase beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine synthase EC:4.2.99.8 P11096, cystathionine beta-synthase EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase EC:4.1.99.4. Length = 295 |
| >gnl|CDD|215204 PLN02356, PLN02356, phosphateglycerate kinase | Back alignment and domain information |
|---|
Score = 115 bits (288), Expect = 7e-29
Identities = 76/236 (32%), Positives = 111/236 (47%), Gaps = 42/236 (17%)
Query: 102 IGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVE 161
IG TP++ +N ++E + K E + P SVKDR+ +I +A ESG + PG V+ E
Sbjct: 51 IGNTPLIRINSLSEATGCEILGKCEFLNPGGSVKDRVAVKIIEEALESGQLFPGG-VVTE 109
Query: 162 PTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDP----------- 210
+ G+T + +A VA G K V +P +E+ +L A GA + P
Sbjct: 110 GSAGSTAISLATVAPAYGCKCHVVIPDDVAIEKSQILEALGATVERVRPVSITHKDHYVN 169
Query: 211 ---EKGL--------RGALDKAEEIVLNTPNA-------------------YMFQQFDNM 240
+ L R + + I L N + QF+N+
Sbjct: 170 IARRRALEANELASKRRKGSETDGIHLEKTNGCISEEEKENSLFSSSCTGGFFADQFENL 229
Query: 241 ANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEP 296
AN + H++ TGPEIWE T G +D FVAA GTGGT+ G RFL+ N IK ++P
Sbjct: 230 ANFRAHYEGTGPEIWEQTQGNLDAFVAAAGTGGTLAGVSRFLQEKNPNIKCFLIDP 285
|
Length = 423 |
| >gnl|CDD|224092 COG1171, IlvA, Threonine dehydratase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 4e-20
Identities = 67/271 (24%), Positives = 108/271 (39%), Gaps = 42/271 (15%)
Query: 104 RTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPT 163
TP+ ++E + K E+++P S K R Y+ ++ E + G ++ +
Sbjct: 25 PTPLQRSPSLSERLGAEIYLKRENLQPVGSFKIRGAYNKLSSLSEEEERAAG---VIAAS 81
Query: 164 TGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDP--EKGLRGALDKA 221
GN G+A+ A G K + MP +T + R +GAE+IL + A + A
Sbjct: 82 AGNHAQGVAYAAKRLGIKATIVMPETTPKIKVDATRGYGAEVILHGDNFDDAYAAAEELA 141
Query: 222 EEIVLNTPNAYMFQQFDN---MANLKIHFDST-GPEIWEDTLGCVDIFVAAIGTGGTITG 277
EE FD+ +A T EI E D +G GG I+G
Sbjct: 142 EEE-----GLTFVPPFDDPDVIAG-----QGTIALEILEQLPDLPDAVFVPVGGGGLISG 191
Query: 278 TGRFLKMMNKEIKVVGVEPAE-----RSVISGE---NAGYVPSILD-------------- 315
LK ++ EIKV+GVEP S+ +G+ V +I D
Sbjct: 192 IATALKALSPEIKVIGVEPEGAPSMYASLKAGKIVVVLPDVGTIADGLAVKRPGDLTFEI 251
Query: 316 -VQLLDEVIKVTNDEAVNMARRLALEEGLLV 345
+L+D+++ V DE R L ++
Sbjct: 252 LRELVDDIVLVDEDEICAAMRDLFERTKIIA 282
|
Length = 347 |
| >gnl|CDD|107205 cd01562, Thr-dehyd, Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen | Back alignment and domain information |
|---|
Score = 78.3 bits (194), Expect = 2e-16
Identities = 65/277 (23%), Positives = 112/277 (40%), Gaps = 57/277 (20%)
Query: 104 RTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMI---TDAEESGDITPGKTVLV 160
RTP++ ++E V K E+++ S K R Y+ + ++ E + + V
Sbjct: 17 RTPLLTSPTLSELLGAEVYLKCENLQKTGSFKIRGAYNKLLSLSEEERAKGV-------V 69
Query: 161 EPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDK 220
+ GN G+A+ A + G + MP + + RA+GAE++L + D+
Sbjct: 70 AASAGNHAQGVAYAAKLLGIPATIVMPETAPAAKVDATRAYGAEVVLYGED------FDE 123
Query: 221 AEEIVLNTPNAYMFQQFDNMANLKIH-FD---------STGPEIWEDTLGCVDIFVAAIG 270
AE + + + IH FD + G EI E + +D +G
Sbjct: 124 AEAKARE------LAEEEGLTF--IHPFDDPDVIAGQGTIGLEILEQ-VPDLDAVFVPVG 174
Query: 271 TGGTITGTGRFLKMMNKEIKVVGVEPAE-----RSVISGE--NAGYVPSILD-------- 315
GG I G +K ++ KV+GVEP +S+ +G+ V +I D
Sbjct: 175 GGGLIAGIATAVKALSPNTKVIGVEPEGAPAMAQSLAAGKPVTLPEVDTIADGLAVKRPG 234
Query: 316 -------VQLLDEVIKVTNDEAVNMARRLALEEGLLV 345
+L+D+V+ V+ DE L E L+
Sbjct: 235 ELTFEIIRKLVDDVVTVSEDEIAAAMLLLFEREKLVA 271
|
Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions. Length = 304 |
| >gnl|CDD|130197 TIGR01127, ilvA_1Cterm, threonine ammonia-lyase, medium form | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 9e-14
Identities = 72/270 (26%), Positives = 116/270 (42%), Gaps = 46/270 (17%)
Query: 105 TPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTT 164
TP++Y +++ V KLE+++ S K R + I + E + +V +
Sbjct: 1 TPLIYSTTLSDITGSEVYLKLENLQKTGSFKIRGALNKIANLSEDQR----QRGVVAASA 56
Query: 165 GNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL--TDPEKGLRGALDKAE 222
GN G+A+ A G K ++ MP S + +++GAE+IL D ++ A AE
Sbjct: 57 GNHAQGVAYAAKKFGIKAVIVMPESAPPSKVKATKSYGAEVILHGDDYDEAYAFATSLAE 116
Query: 223 EIVLNTPNAYMF-QQFDN---MANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGT 278
E +F FD+ MA + G EI ED + VD + +G GG I+G
Sbjct: 117 E------EGRVFVHPFDDEFVMAGQ----GTIGLEIMED-IPDVDTVIVPVGGGGLISGV 165
Query: 279 GRFLKMMNKEIKVVGVEPAE------RSVISG--ENAGYVPSILD--------------- 315
K +N +KV+GVE AE S+ G + V +I D
Sbjct: 166 ASAAKQINPNVKVIGVE-AEGAPSMYESLREGKIKAVESVRTIADGIAVKKPGDLTFNII 224
Query: 316 VQLLDEVIKVTNDEAVNMARRLALEEGLLV 345
+ +D+V+ V +E N L LE ++
Sbjct: 225 KEYVDDVVTVDEEEIANAIYLL-LERHKIL 253
|
A form of threonine dehydratase with two copies of the C-terminal domain pfam00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes [Amino acid biosynthesis, Pyruvate family]. Length = 380 |
| >gnl|CDD|236317 PRK08638, PRK08638, threonine dehydratase; Validated | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 1e-11
Identities = 60/200 (30%), Positives = 90/200 (45%), Gaps = 21/200 (10%)
Query: 102 IGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGY---SMITDAEESGDITPGKTV 158
I +TP+ N ++E C G + KLE+M+ S K R + S +TDAE+ +
Sbjct: 25 IRKTPLPRSNYLSERCKGEIFLKLENMQRTGSFKIRGAFNKLSSLTDAEKRKGV------ 78
Query: 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGAL 218
V + GN G+A A+ G V MP + +GAE++L +
Sbjct: 79 -VACSAGNHAQGVALSCALLGIDGKVVMPKGAPKSKVAATCGYGAEVVLHG--DNFNDTI 135
Query: 219 DKAEEIVLNTPNAYMFQQFDN---MANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTI 275
K EEIV ++ +D+ +A + G EI ED L VD + IG GG I
Sbjct: 136 AKVEEIVEEEGRTFI-PPYDDPKVIAGQ----GTIGLEILED-LWDVDTVIVPIGGGGLI 189
Query: 276 TGTGRFLKMMNKEIKVVGVE 295
G LK +N I ++GV+
Sbjct: 190 AGIAVALKSINPTIHIIGVQ 209
|
Length = 333 |
| >gnl|CDD|107206 cd01563, Thr-synth_1, Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 2e-11
Identities = 67/294 (22%), Positives = 113/294 (38%), Gaps = 48/294 (16%)
Query: 88 DFHGVNIAEDVTQLIGRTPMVYLNKVTE-GCVGNVAAKLESMEPCRSVKDRIGYSMITDA 146
+ V + V+ G TP+V ++ E N+ K E + P S KDR ++ A
Sbjct: 6 ELLPVTEDDIVSLGEGNTPLVRAPRLGERLGGKNLYVKDEGLNPTGSFKDRGMTVAVSKA 65
Query: 147 EESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206
+E G + +TGNT +A AA G K +V +PA L + A+GA ++
Sbjct: 66 KELG-----VKAVACASTGNTSASLAAYAARAGIKCVVFLPAGKALGKLAQALAYGATVL 120
Query: 207 LTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDST-GPEIWEDTLG--CVD 263
+ G D A +V +++ ++ T EI E LG D
Sbjct: 121 ------AVEGNFDDALRLVRELAEENWIYLSNSLNPYRLEGQKTIAFEIAEQ-LGWEVPD 173
Query: 264 IFVAAIGTGGTITGTGRFLKMM------NKEIKVVGVEPA------------ERSVISGE 305
V +G GG IT + K + ++ ++VGV+ + + E
Sbjct: 174 YVVVPVGNGGNITAIWKGFKELKELGLIDRLPRMVGVQAEGAAPIVRAFKEGKDDIEPVE 233
Query: 306 NA---------GYVPSILDV-QLLDE----VIKVTNDEAVNMARRLALEEGLLV 345
N G S + + E + V+++E + + LA EG+ V
Sbjct: 234 NPETIATAIRIGNPASGPKALRAVRESGGTAVAVSDEEILEAQKLLARTEGIFV 287
|
It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants. Length = 324 |
| >gnl|CDD|233712 TIGR02079, THD1, threonine dehydratase | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 9e-10
Identities = 50/206 (24%), Positives = 87/206 (42%), Gaps = 11/206 (5%)
Query: 95 AEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITP 154
+ + +++ TP+ +++E N+ K E ++P RS K R Y+ + ++
Sbjct: 7 RKRLKEVVPHTPLQLNERLSEKYGANIYLKREDLQPVRSYKIRGAYNFLKQLSDAQL--- 63
Query: 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAE---IILTDPE 211
+V + GN G A+ G V MPA+T ++ ++ FG E IIL
Sbjct: 64 -AKGVVCASAGNHAQGFAYACRHLGVHGTVFMPATTPKQKIDRVKIFGGEFIEIILVGDT 122
Query: 212 KGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGT 271
A A E V + FD+ ++ + EI + D V +G
Sbjct: 123 FDQCAA--AAREHVEDH-GGTFIPPFDDPRIIEGQ-GTVAAEILDQLPEKPDYVVVPVGG 178
Query: 272 GGTITGTGRFLKMMNKEIKVVGVEPA 297
GG I+G +L + + K++GVEP
Sbjct: 179 GGLISGLTTYLAGTSPKTKIIGVEPE 204
|
This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been charcterized (TIGR01124 and TIGR01127). Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway [Amino acid biosynthesis, Pyruvate family]. Length = 409 |
| >gnl|CDD|180550 PRK06382, PRK06382, threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 9e-10
Identities = 50/199 (25%), Positives = 94/199 (47%), Gaps = 19/199 (9%)
Query: 102 IGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDR---IGYSMITDAEESGDITPGKTV 158
+ RTP+++ + G++ KLE+ + S K R +S +++ E +
Sbjct: 23 LNRTPLIHSTTFGDEYGGDIYFKLENFQKTGSFKSRGAVFKFSKLSEDEL-------RNG 75
Query: 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT--DPEKGLRG 216
++ + GN G+A+ A++ G + MP T ++ + A+GA +ILT D ++ R
Sbjct: 76 VITASAGNHAQGVAYAASINGIDAKIVMPEYTIPQKVNAVEAYGAHVILTGRDYDEAHRY 135
Query: 217 ALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTIT 276
A A + N + F++ + + G EI ED L +D + +G GG I+
Sbjct: 136 ADKIAMD-----ENRTFIEAFNDRWVISGQ-GTIGLEIMED-LPDLDQIIVPVGGGGLIS 188
Query: 277 GTGRFLKMMNKEIKVVGVE 295
G K +N +K++G+E
Sbjct: 189 GIALAAKHINPNVKIIGIE 207
|
Length = 406 |
| >gnl|CDD|236318 PRK08639, PRK08639, threonine dehydratase; Validated | Back alignment and domain information |
|---|
Score = 57.1 bits (139), Expect = 4e-09
Identities = 61/227 (26%), Positives = 97/227 (42%), Gaps = 44/227 (19%)
Query: 95 AEDVTQ-------LIGRTPM---VYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMI- 143
A+D+ + ++ TP+ YL++ G NV K E ++P RS K R Y+ I
Sbjct: 9 AKDIDKAAKRLKDVVPETPLQRNDYLSEKY-GA--NVYLKREDLQPVRSYKLRGAYNAIS 65
Query: 144 --TDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAF 201
+D E + + V + GN G+A+ G ++ MP +T ++ +R F
Sbjct: 66 QLSDEELAAGV-------VCASAGNHAQGVAYACRHLGIPGVIFMPVTTPQQKIDQVRFF 118
Query: 202 GA---EIILTDPEKG------LRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGP 252
G EI+L G A + AEE A FD+ ++ +
Sbjct: 119 GGEFVEIVLV----GDTFDDSAAAAQEYAEET-----GATFIPPFDD-PDVIAGQGTVAV 168
Query: 253 EIWED--TLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPA 297
EI E G D +G GG I+G +LK + + K++GVEPA
Sbjct: 169 EILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGVEPA 215
|
Length = 420 |
| >gnl|CDD|130194 TIGR01124, ilvA_2Cterm, threonine ammonia-lyase, biosynthetic, long form | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 6e-09
Identities = 69/259 (26%), Positives = 103/259 (39%), Gaps = 54/259 (20%)
Query: 105 TPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMIT----DAEESGDITPGKTVLV 160
TP+ K++E + K E ++P S K R Y+ + + + G I
Sbjct: 18 TPLQKAAKLSERLGNRILIKREDLQPVFSFKLRGAYNKMAQLSPEQKARGVIAA------ 71
Query: 161 EPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRG---- 216
+ GN G+AF AA G K ++ MP +T + +R FG E++ L G
Sbjct: 72 --SAGNHAQGVAFSAARLGLKALIVMPETTPDIKVDAVRGFGGEVV-------LHGANFD 122
Query: 217 -ALDKAEEIVLNTPNAYMF-QQFDNMANLKIHFDST-GPEIWEDTLGCVD-IFVAAIGTG 272
A KA E L+ F FD+ L I T EI +D +FV +G G
Sbjct: 123 DAKAKAIE--LSQEKGLTFIHPFDD--PLVIAGQGTLALEILRQVANPLDAVFV-PVGGG 177
Query: 273 GTITGTGRFLKMMNKEIKVVGVEPAERSVISGE-NAGYVPSILDV--------------- 316
G G +K + EIKV+GVEP + + +AG + V
Sbjct: 178 GLAAGVAALIKQLMPEIKVIGVEPTDSDCMKQALDAGEPVDLDQVGLFADGVAVKRVGDE 237
Query: 317 ------QLLDEVIKVTNDE 329
Q LD+++ V DE
Sbjct: 238 TFRLCQQYLDDIVTVDTDE 256
|
This model describes a form of threonine ammonia-lyase, a pyridoxal-phosphate dependent enzyme, with two copies of the threonine dehydratase C-terminal domain (pfam00585). Members with known function participate in isoleucine biosynthesis and are inhibited by isoleucine. Alternate name: threonine deaminase, threonine dehydratase. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain [Amino acid biosynthesis, Pyruvate family]. Length = 499 |
| >gnl|CDD|236182 PRK08198, PRK08198, threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (136), Expect = 1e-08
Identities = 61/206 (29%), Positives = 92/206 (44%), Gaps = 33/206 (16%)
Query: 104 RTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMIT--DAEESGDITPGKTVLVE 161
RTP+ Y ++E V K E+++ S K R Y+ I EE +V
Sbjct: 22 RTPLEYSRTLSELTGAEVYLKCENLQRTGSFKIRGAYNKIASLSEEE------RARGVVA 75
Query: 162 PTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKA 221
+ GN G+A+ A++ G K + MP + L + R++GAE++L AL KA
Sbjct: 76 ASAGNHAQGVAYAASLLGIKATIVMPETAPLSKVKATRSYGAEVVLHG--DVYDEALAKA 133
Query: 222 EEIVLNTPNAYMFQQFDNMANLKIH-FD---------STGPEIWEDTLGCVDIFVAAIGT 271
+E+ T F +H FD + G EI ED L VD V IG
Sbjct: 134 QELAEET--GATF----------VHPFDDPDVIAGQGTIGLEILED-LPDVDTVVVPIGG 180
Query: 272 GGTITGTGRFLKMMNKEIKVVGVEPA 297
GG I+G +K + E++V+GV+
Sbjct: 181 GGLISGVATAVKALRPEVRVIGVQAE 206
|
Length = 404 |
| >gnl|CDD|223572 COG0498, ThrC, Threonine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 4e-08
Identities = 56/270 (20%), Positives = 89/270 (32%), Gaps = 67/270 (24%)
Query: 119 GNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVK 178
N+ K P S KDR +++ A+E G T ++ ++GNTG A AA
Sbjct: 94 DNLYVKELGHNPTGSFKDRGMTVLVSLAKELGAKT-----ILCASSGNTGASAAAYAARA 148
Query: 179 GYKLIVTMPAS-TNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQF 237
G K+ V P + + + GA +I + G D A+E+V
Sbjct: 149 GLKVFVLYPKGKVSPGKLAQMLTLGAHVI------AVDGNFDDAQELV------------ 190
Query: 238 DNMANLKIHFDSTGP--------------EIWEDTLGCV-DIFVAAIGTGGTITG----- 277
AN + + EI E D V +G GG +
Sbjct: 191 KEAANREGLLSAVNSINPYRLEGQKTYAFEIAEQLGWKAPDHVVVPVGNGGNLLAIYKGF 250
Query: 278 -----TGRFLKMMNKEIKVV--GVEP-AERSVISGENAG--------YVPSILD--VQLL 319
G+ + V G P E PS + + L
Sbjct: 251 KEGLPIGK-IDKAPNMNGVQAEGFSPGVYAWKEGRETPETIAPAMDIGNPSNWERALFAL 309
Query: 320 DE----VIKVTNDEAVNMARRLALEEGLLV 345
E + V+++E + + LA EG+L+
Sbjct: 310 RESGGLAVAVSDEEILEAIKLLAEREGILI 339
|
Length = 411 |
| >gnl|CDD|181457 PRK08526, PRK08526, threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 2e-07
Identities = 47/213 (22%), Positives = 85/213 (39%), Gaps = 37/213 (17%)
Query: 96 EDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPG 155
+ ++ + +TP Y +++ V K E+++ + K R Y+ I + E
Sbjct: 12 QRISGFVNKTPFAYAPFLSKISGAEVYLKKENLQITGAYKIRGAYNKIANLSEEQK---- 67
Query: 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDP----- 210
+ ++ + GN G+A A G K ++ MP +T L + +A GAE+IL
Sbjct: 68 QHGVIAASAGNHAQGVAISAKKFGIKAVIVMPEATPLLKVSGTKALGAEVILKGDNYDEA 127
Query: 211 -EKGLRGALDK--------AEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGC 261
L A + +E V+ + D +++L
Sbjct: 128 YAFALEYAKENNLTFIHPFEDEEVMAGQGTIALEMLDEISDL------------------ 169
Query: 262 VDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGV 294
D+ V +G GG I+G K +N IK++GV
Sbjct: 170 -DMVVVPVGGGGLISGIASAAKQINPNIKIIGV 201
|
Length = 403 |
| >gnl|CDD|237111 PRK12483, PRK12483, threonine dehydratase; Reviewed | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 3e-07
Identities = 70/244 (28%), Positives = 102/244 (41%), Gaps = 49/244 (20%)
Query: 118 VGN-VAAKLESMEPCRSVKDRIGYSMI----TDAEESGDITPGKTVLVEPTTGNTGLGIA 172
+GN V K E ++P S K R Y+ + + G IT + GN G+A
Sbjct: 50 LGNQVLLKREDLQPVFSFKIRGAYNKMARLPAEQLARGVITA--------SAGNHAQGVA 101
Query: 173 FVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPE--KGLRGALDKAEE--IVLNT 228
AA G K ++ MP +T + +RA G E++L L AL AEE +
Sbjct: 102 LAAARLGVKAVIVMPRTTPQLKVDGVRAHGGEVVLHGESFPDALAHALKLAEEEGLTFVP 161
Query: 229 PNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVD-IFVAAIGTGGTITGTGRFLKMMNK 287
P F D +A + EI G +D IFV +G GG I G ++K +
Sbjct: 162 P----FDDPDVIAGQ----GTVAMEILRQHPGPLDAIFVP-VGGGGLIAGIAAYVKYVRP 212
Query: 288 EIKVVGVEP-----------AERSVISGENAGYVPSILDVQL-----------LDEVIKV 325
EIKV+GVEP A V+ G+ + + Q+ +DEV+ V
Sbjct: 213 EIKVIGVEPDDSNCLQAALAAGERVVLGQVGLFADGVAVAQIGEHTFELCRHYVDEVVTV 272
Query: 326 TNDE 329
+ DE
Sbjct: 273 STDE 276
|
Length = 521 |
| >gnl|CDD|236417 PRK09224, PRK09224, threonine dehydratase; Reviewed | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 5e-07
Identities = 74/278 (26%), Positives = 109/278 (39%), Gaps = 79/278 (28%)
Query: 97 DVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMI---TDAE-ESGDI 152
DV Q TP+ K++ V K E ++P S K R Y+ + T+ + G I
Sbjct: 16 DVAQ---ETPLEKAPKLSARLGNQVLLKREDLQPVFSFKLRGAYNKMAQLTEEQLARGVI 72
Query: 153 TPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL---TD 209
T + GN G+A AA G K ++ MP +T + +RAFG E++L +
Sbjct: 73 TA--------SAGNHAQGVALSAARLGIKAVIVMPVTTPDIKVDAVRAFGGEVVLHGDSF 124
Query: 210 PEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIH-FD---------STGPEIWEDTL 259
E A A E L F IH FD + EI +
Sbjct: 125 DE-----AYAHAIE--LAEEEGLTF----------IHPFDDPDVIAGQGTIAMEILQQHP 167
Query: 260 GCVD-IFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAE-----RSVISGENAGYVPSI 313
+D +FV +G GG I G ++K + EIKV+GVEP + ++ +GE
Sbjct: 168 HPLDAVFVP-VGGGGLIAGVAAYIKQLRPEIKVIGVEPEDSACLKAALEAGE-----RVD 221
Query: 314 LD----------V------------QLLDEVIKVTNDE 329
L V + +D+VI V DE
Sbjct: 222 LPQVGLFADGVAVKRIGEETFRLCQEYVDDVITVDTDE 259
|
Length = 504 |
| >gnl|CDD|180709 PRK06815, PRK06815, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 1e-06
Identities = 64/257 (24%), Positives = 103/257 (40%), Gaps = 57/257 (22%)
Query: 119 GNVAAKLESMEPCRSVKDRIGYS----MITDAEESGDITPGKTVLVEPTTGNTGLGIAFV 174
V K E ++ S K R G S ++ +A+ + + ++GN G G+A
Sbjct: 35 CEVYLKCEHLQHTGSFKFR-GASNKLRLLNEAQRQQGV-------ITASSGNHGQGVALA 86
Query: 175 AAVKGYKLIVTMPASTNLERRILLRAFGAEIIL--TDPEKGLRGALDKAEEIVL------ 226
A + G + V P + + +RA GAE+ L D A AE+
Sbjct: 87 AKLAGIPVTVYAPEQASAIKLDAIRALGAEVRLYGGDALNAELAARRAAEQQGKVYISPY 146
Query: 227 NTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMN 286
N P Q + G E+ E +FVA +G GG I+G +LK ++
Sbjct: 147 NDPQVIAGQ------------GTIGMELVEQQPDLDAVFVA-VGGGGLISGIATYLKTLS 193
Query: 287 KEIKVVG------------------VEPAERSVISGENAGYVP--SI---LDVQLLDEVI 323
+ +++G VE AE+ +S AG V +I L QL+D+ +
Sbjct: 194 PKTEIIGCWPANSPSLYTSLEAGEIVEVAEQPTLSDGTAGGVEPGAITFPLCQQLIDQKV 253
Query: 324 KVTNDEAVNMARRLALE 340
V+ +E + A RL E
Sbjct: 254 LVSEEE-IKEAMRLIAE 269
|
Length = 317 |
| >gnl|CDD|181319 PRK08246, PRK08246, threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 5e-06
Identities = 56/213 (26%), Positives = 85/213 (39%), Gaps = 35/213 (16%)
Query: 95 AEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITP 154
A+ + I RTP++ + G V KLE ++ S K R ++ + A P
Sbjct: 14 AQRIAPHIRRTPVLEADGAGFGPAP-VWLKLEHLQHTGSFKARGAFNRLLAAPV-----P 67
Query: 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGL 214
V V + GN GL +A+ AA G V +P + + LRA GAE+++ E
Sbjct: 68 AAGV-VAASGGNAGLAVAYAAAALGVPATVFVPETAPPAKVARLRALGAEVVVVGAE--Y 124
Query: 215 RGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEI----------WEDTLGCVDI 264
AL+ A+ T A + +D PE+ E+ VD
Sbjct: 125 ADALEAAQAFAAET-GALLCHAYDQ------------PEVLAGAGTLGLEIEEQAPGVDT 171
Query: 265 FVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPA 297
+ A+G GG I G + +VV VEP
Sbjct: 172 VLVAVGGGGLIAGIAAW---FEGRARVVAVEPE 201
|
Length = 310 |
| >gnl|CDD|235539 PRK05638, PRK05638, threonine synthase; Validated | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 1e-05
Identities = 58/270 (21%), Positives = 112/270 (41%), Gaps = 40/270 (14%)
Query: 103 GRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEP 162
G TP++ +++E NV K E+ P S +DR+ ++ + +
Sbjct: 65 GGTPLIR-ARISEKLGENVYIKDETRNPTGSFRDRLATVAVSYG-----LPYAANGFIVA 118
Query: 163 TTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAE 222
+ GN +A +A G + V +P + + I + AFGA+II + + A++ AE
Sbjct: 119 SDGNAAASVAAYSARAGKEAFVVVPRKVDKGKLIQMIAFGAKIIRY--GESVDEAIEYAE 176
Query: 223 EIV-LNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGR- 280
E+ LN Y N+ L+ + E+WE+ + + V G+G + +
Sbjct: 177 ELARLN--GLYNVTPEYNIIGLE-GQKTIAFELWEE-INPTHVIV-PTGSGSYLYSIYKG 231
Query: 281 FLKMMNKEI-----KVVGVEPAERSVISGENAG-------------YVPSILDVQLLDEV 322
F +++ + K++ V+ + I+ E G YV + + + + E
Sbjct: 232 FKELLEIGVIEEIPKLIAVQTERCNPIASEILGNKTKCNETKALGLYVKNPVMKEYVSEA 291
Query: 323 IK-------VTNDEAVNMARRLALEEGLLV 345
IK V N+E + +L +EG+
Sbjct: 292 IKESGGTAVVVNEEEIMAGEKLLAKEGIFA 321
|
Length = 442 |
| >gnl|CDD|136018 PRK06721, PRK06721, threonine synthase; Reviewed | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 2e-05
Identities = 47/183 (25%), Positives = 74/183 (40%), Gaps = 13/183 (7%)
Query: 97 DVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGK 156
DV+ + G TP++ L +++ + K E P S KDR + A+E G
Sbjct: 21 DVSLMEGNTPLIPLLNISKQLGIQLYGKYEGANPTGSFKDRGMVMAVAKAKEE-----GS 75
Query: 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLR-AFGAEIILTDPEKGLR 215
++ +TGNT A AA G K I+ +P ++ A+GAEII +
Sbjct: 76 EAIICASTGNTSASAAAYAARLGMKCIIVIPEGKIAHGKLAQAVAYGAEII------SIE 129
Query: 216 GALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGP-EIWEDTLGCVDIFVAAIGTGGT 274
G D A + V N +++ +I T EI + D+ +G G
Sbjct: 130 GNFDDALKAVRNIAAEEPITLVNSVNPYRIEGQKTAAFEICDQLQRAPDVLAIPVGNAGN 189
Query: 275 ITG 277
IT
Sbjct: 190 ITA 192
|
Length = 352 |
| >gnl|CDD|234245 TIGR03528, 2_3_DAP_am_ly, diaminopropionate ammonia-lyase | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 4e-05
Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 147 EESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206
E+ GDIT V T GN G G+A+ A G K +V MP + ER +RA GAE
Sbjct: 109 EKLGDIT-----FVTATDGNHGRGVAWAANQLGQKSVVYMPKGSAQERLENIRAEGAECT 163
Query: 207 LTDP--EKGLRGALDKAEE 223
+TD + +R A A+E
Sbjct: 164 ITDLNYDDAVRLAWKMAQE 182
|
Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate. Length = 396 |
| >gnl|CDD|235789 PRK06381, PRK06381, threonine synthase; Validated | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 5e-05
Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 12/111 (10%)
Query: 103 GRTPMVYLNKVTEGCVG--NVAAKLESMEPCRSVKDRIGYSMITDAEESG--DITPGKTV 158
G TP++ K+ E +G + K E P + KDRI + + A G IT G
Sbjct: 14 GGTPLLRARKL-EEELGLRKIYLKFEGANPTGTQKDRIAEAHVRRAMRLGYSGITVG--- 69
Query: 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209
T GN G IA+ A + G K ++ +P S + R + +GAEII D
Sbjct: 70 ----TCGNYGASIAYFARLYGLKAVIFIPRSYSNSRVKEMEKYGAEIIYVD 116
|
Length = 319 |
| >gnl|CDD|132036 TIGR02991, ectoine_eutB, ectoine utilization protein EutB | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 8e-05
Identities = 65/277 (23%), Positives = 104/277 (37%), Gaps = 37/277 (13%)
Query: 95 AEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITP 154
A ++ + TP+V ++E C V KLE + S K R T+A S T
Sbjct: 10 AARISGRVEETPLVESPSLSELCGVPVHLKLEHRQTTGSFKLRGA----TNAVLSLSDTQ 65
Query: 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGL 214
+V +TGN G +A+ AA +G + + M + +R GAE+ +
Sbjct: 66 RAAGVVAASTGNHGRALAYAAAEEGVRATICMSELVPQNKVDEIRRLGAEVRIVG----- 120
Query: 215 RGALDKAEEI--VLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTG 272
R D EE+ ++ M FD+ + + G E+ E + V G G
Sbjct: 121 RSQDDAQEEVERLVADRGLTMLPPFDHPDIVAGQ-GTLGLEVVEQMPDLATVLVPLSG-G 178
Query: 273 GTITGTGRFLKMMNKEIKVVGVE-----------PAERSVISGENAGYVPSI-------- 313
G +G +K + +V+GV A R V+ E S+
Sbjct: 179 GLASGVAMAVKAARPDTRVIGVSMERGAAMKASLQAGRPVLVAELPTLADSLGGGIGLDN 238
Query: 314 -----LDVQLLDEVIKVTNDEAVNMARRLALEEGLLV 345
+ LLDE++ V+ E R EE +V
Sbjct: 239 RVTFAMCKALLDEIVLVSEAEIAAGIRHAYAEEREIV 275
|
Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases. Length = 317 |
| >gnl|CDD|235842 PRK06608, PRK06608, threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 8e-05
Identities = 51/214 (23%), Positives = 94/214 (43%), Gaps = 35/214 (16%)
Query: 98 VTQLIGRTPMVY---LNKVTEGCVGN-VAAKLESMEPCRSVKDRIGYSMITDAEESGDIT 153
+ Q + TP+V+ LN++ G+ + K+ES++ + K R + + + +E G +
Sbjct: 17 IKQYLHLTPIVHSESLNEML----GHEIFFKVESLQKTGAFKVRGVLNHLLELKEQGKL- 71
Query: 154 PGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKG 213
P K +V +TGN G +A+ + + G K + +P +T+ ++ +G E+ILT+
Sbjct: 72 PDK--IVAYSTGNHGQAVAYASKLFGIKTRIYLPLNTSKVKQQAALYYGGEVILTNTR-- 127
Query: 214 LRGALDKAEEIVL--NTPNAYMFQQFDNMANLKIHFDST-------GPEIWEDTLGCVDI 264
+AEE Y D+ DST E + D
Sbjct: 128 -----QEAEEKAKEDEEQGFYYIHPSDS--------DSTIAGAGTLCYEALQQLGFSPDA 174
Query: 265 FVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAE 298
A+ G GG I+GT ++++ ++G EP
Sbjct: 175 IFASCGGGGLISGTYLAKELISPTSLLIGSEPLN 208
|
Length = 338 |
| >gnl|CDD|178165 PLN02550, PLN02550, threonine dehydratase | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 1e-04
Identities = 47/202 (23%), Positives = 81/202 (40%), Gaps = 24/202 (11%)
Query: 105 TPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMIT----DAEESGDITPGKTVLV 160
+P+ K++E V K E ++P S K R Y+M+ + + G I
Sbjct: 110 SPLQLAKKLSERLGVKVLLKREDLQPVFSFKLRGAYNMMAKLPKEQLDKGVICS------ 163
Query: 161 EPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT----DPEKGLRG 216
+ GN G+A A G ++ MP +T + + GA ++L D +
Sbjct: 164 --SAGNHAQGVALSAQRLGCDAVIAMPVTTPEIKWQSVERLGATVVLVGDSYDEAQAYAK 221
Query: 217 ALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTIT 276
E P FD+ ++ + G EI G + +G GG I
Sbjct: 222 QRALEEGRTFIPP-------FDH-PDVIAGQGTVGMEIVRQHQGPLHAIFVPVGGGGLIA 273
Query: 277 GTGRFLKMMNKEIKVVGVEPAE 298
G ++K + E+K++GVEP++
Sbjct: 274 GIAAYVKRVRPEVKIIGVEPSD 295
|
Length = 591 |
| >gnl|CDD|232896 TIGR00260, thrC, threonine synthase | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 40/141 (28%), Positives = 59/141 (41%), Gaps = 16/141 (11%)
Query: 89 FHGVNIAEDVTQLI-GRTPMVYLNKVTEGCVG--NVAAKLESMEPCRSVKDRIGYSMITD 145
F V +D+ L G TP+ + VG N+ P S KDR +T
Sbjct: 7 FLPVTPEKDLVDLGEGVTPLFRSPALVA-NVGIKNLYVLELFHNPTLSFKDRGMAVALTK 65
Query: 146 AEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA-STNLERRILLRAFGAE 204
A E G+ TVL +TGNTG A A G K+++ PA +L + + AE
Sbjct: 66 ALELGN----DTVLCA-STGNTGAAAAAYAGKAGVKVVILYPAGKISLGKLAQALGYNAE 120
Query: 205 IILTDPEKGLRGALDKAEEIV 225
++ + G D A+ +V
Sbjct: 121 VV------AIDGNFDDAQRLV 135
|
Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model [Amino acid biosynthesis, Aspartate family]. Length = 328 |
| >gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 4e-04
Identities = 27/151 (17%), Positives = 56/151 (37%), Gaps = 22/151 (14%)
Query: 147 EESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206
+ + PG+TVLV G G +A G ++ ++ E+ LL+ GA+ +
Sbjct: 135 FDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAV---VSSSEKLELLKELGADHV 191
Query: 207 LTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCV--DI 264
+ E+ + + + D + D+ G + + +L +
Sbjct: 192 INYREEDFVEQVRELTG----------GKGVDVV------LDTVGGDTFAASLAALAPGG 235
Query: 265 FVAAIG-TGGTITGTGRFLKMMNKEIKVVGV 294
+ +IG G L ++ K + + GV
Sbjct: 236 RLVSIGALSGGPPVPLNLLPLLGKRLTLRGV 266
|
Length = 326 |
| >gnl|CDD|130808 TIGR01747, diampropi_NH3ly, diaminopropionate ammonia-lyase family | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 4e-04
Identities = 20/55 (36%), Positives = 27/55 (49%)
Query: 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209
G+ T GN G G+A+ A G K +V MP + ER + GAE +TD
Sbjct: 93 GQATFATATDGNHGRGVAWAAQQLGQKAVVYMPKGSAQERVENILNLGAECTITD 147
|
This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase) [Energy metabolism, Other]. Length = 376 |
| >gnl|CDD|236244 PRK08329, PRK08329, threonine synthase; Validated | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 7e-04
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 12/101 (11%)
Query: 105 TPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTT 164
TP V + V KL+ ++P S KDR Y + +E G V+++ ++
Sbjct: 65 TPTVKRSI-------KVYFKLDYLQPTGSFKDRGTYVTVAKLKEEGI----NEVVID-SS 112
Query: 165 GNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEI 205
GN L +A + +G K+ V + + + E+ LL GAE+
Sbjct: 113 GNAALSLALYSLSEGIKVHVFVSYNASKEKISLLSRLGAEL 153
|
Length = 347 |
| >gnl|CDD|235757 PRK06260, PRK06260, threonine synthase; Validated | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 7e-04
Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 17/127 (13%)
Query: 103 GRTPMVYLNKV-TEGCVGNVAAKLESMEPCRSVKDRIGYSM-ITDAEESGDITPGKTVLV 160
G TP+ + E V + K E P S KDR G ++ +T A E G +
Sbjct: 66 GGTPLYRCPNLEKELGVKELYVKHEGANPTGSFKDR-GMTVGVTKALELG-----VKTVA 119
Query: 161 EPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRA--FGAEIILTDPEKGLRGAL 218
+TGNT +A AA G K V +PA + L +A GA+++ + G
Sbjct: 120 CASTGNTSASLAAYAARAGLKCYVLLPAG-KVALGKLAQALLHGAKVL------EVDGNF 172
Query: 219 DKAEEIV 225
D A ++V
Sbjct: 173 DDALDMV 179
|
Length = 397 |
| >gnl|CDD|236186 PRK08206, PRK08206, diaminopropionate ammonia-lyase; Provisional | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.002
Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 146 AEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEI 205
E+ GDIT T GN G G+A+ A G K ++ MP ++ ER +RA GAE
Sbjct: 111 REKLGDIT-----FATATDGNHGRGVAWAAQQLGQKAVIYMPKGSSEERVDAIRALGAEC 165
Query: 206 ILTD 209
I+TD
Sbjct: 166 IITD 169
|
Length = 399 |
| >gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.002
Identities = 35/154 (22%), Positives = 59/154 (38%), Gaps = 28/154 (18%)
Query: 146 AEESGDITPGKTVLVEPTTGNTGLGIAFVAAVK--GYKLIVTMPASTNLERRILLRAFGA 203
+G + PG TVLV G G+G+ K G ++IVT + LE L + GA
Sbjct: 126 LRRAGVLKPGDTVLV---LGAGGVGLLAAQLAKAAGARVIVTDRSDEKLE---LAKELGA 179
Query: 204 EIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTG-PEIWEDTLGCV 262
+ ++ E+ D EE+ L D + D+ G PE L +
Sbjct: 180 DHVIDYKEE------DLEEELRLTGGGG-----AD------VVIDAVGGPETLAQALRLL 222
Query: 263 DIF--VAAIGTGGTITGTGRFLKMMNKEIKVVGV 294
+ +G +++ KE+ ++G
Sbjct: 223 RPGGRIVVVGGTSGGPPLDDLRRLLFKELTIIGS 256
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 271 |
| >gnl|CDD|181283 PRK08197, PRK08197, threonine synthase; Validated | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.002
Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 8/109 (7%)
Query: 103 GRTPMVYLNKVTEGC-VGNVAAKLESMEPCRSVKDRIGYSM-ITDAEESGDITPGKTVLV 160
G TP++ L ++ + +G + K E + P S K R G ++ ++ A+E G L
Sbjct: 78 GMTPLLPLPRLGKALGIGRLWVKDEGLNPTGSFKAR-GLAVGVSRAKELG-----VKHLA 131
Query: 161 EPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209
PT GN G A AA G + + MPA R+ GAE+ L D
Sbjct: 132 MPTNGNAGAAWAAYAARAGIRATIFMPADAPEITRLECALAGAELYLVD 180
|
Length = 394 |
| >gnl|CDD|235918 PRK07048, PRK07048, serine/threonine dehydratase; Validated | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.003
Identities = 37/156 (23%), Positives = 62/156 (39%), Gaps = 26/156 (16%)
Query: 163 TTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDK-- 220
++GN IA A + G + MP + R +G E++ D R + +
Sbjct: 79 SSGNHAQAIALSARLLGIPATIVMPQDAPAAKVAATRGYGGEVVTYDRYTEDREEIGRRL 138
Query: 221 AEEIVLNTPNAYMFQQFDNMANLKIHFD------STGPEIWEDTLGCVDIFVAAIGTGGT 274
AEE L + +D H + E++E+ G +D +G GG
Sbjct: 139 AEERGLT-----LIPPYD-------HPHVIAGQGTAAKELFEEV-GPLDALFVCLGGGGL 185
Query: 275 ITGTGRFLKMMNKEIKVVGVEP-----AERSVISGE 305
++G + ++ KV GVEP ++S SGE
Sbjct: 186 LSGCALAARALSPGCKVYGVEPEAGNDGQQSFRSGE 221
|
Length = 321 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 347 | |||
| COG0031 | 300 | CysK Cysteine synthase [Amino acid transport and m | 100.0 | |
| PLN03013 | 429 | cysteine synthase | 100.0 | |
| PLN02565 | 322 | cysteine synthase | 100.0 | |
| PLN02556 | 368 | cysteine synthase/L-3-cyanoalanine synthase | 100.0 | |
| PRK11761 | 296 | cysM cysteine synthase B; Provisional | 100.0 | |
| TIGR01136 | 299 | cysKM cysteine synthases. This model discriminates | 100.0 | |
| TIGR01138 | 290 | cysM cysteine synthase B. Alternate name: O-acetyl | 100.0 | |
| TIGR01139 | 298 | cysK cysteine synthase A. This model distinguishes | 100.0 | |
| PLN00011 | 323 | cysteine synthase | 100.0 | |
| PRK12391 | 427 | tryptophan synthase subunit beta; Reviewed | 100.0 | |
| PRK10717 | 330 | cysteine synthase A; Provisional | 100.0 | |
| COG1171 | 347 | IlvA Threonine dehydratase [Amino acid transport a | 100.0 | |
| KOG1252 | 362 | consensus Cystathionine beta-synthase and related | 100.0 | |
| TIGR01415 | 419 | trpB_rel pyridoxal-phosphate dependent TrpB-like e | 100.0 | |
| PLN02970 | 328 | serine racemase | 100.0 | |
| cd01561 | 291 | CBS_like CBS_like: This subgroup includes Cystathi | 100.0 | |
| PLN02356 | 423 | phosphateglycerate kinase | 100.0 | |
| PRK08526 | 403 | threonine dehydratase; Provisional | 100.0 | |
| PRK07476 | 322 | eutB threonine dehydratase; Provisional | 100.0 | |
| PRK08198 | 404 | threonine dehydratase; Provisional | 100.0 | |
| cd06447 | 404 | D-Ser-dehyd D-Serine dehydratase is a pyridoxal ph | 100.0 | |
| PRK06382 | 406 | threonine dehydratase; Provisional | 100.0 | |
| PRK12483 | 521 | threonine dehydratase; Reviewed | 100.0 | |
| PRK08638 | 333 | threonine dehydratase; Validated | 100.0 | |
| PRK06352 | 351 | threonine synthase; Validated | 100.0 | |
| TIGR02991 | 317 | ectoine_eutB ectoine utilization protein EutB. Mem | 100.0 | |
| TIGR02079 | 409 | THD1 threonine dehydratase. This model represents | 100.0 | |
| PRK07048 | 321 | serine/threonine dehydratase; Validated | 100.0 | |
| PRK07591 | 421 | threonine synthase; Validated | 100.0 | |
| TIGR01137 | 454 | cysta_beta cystathionine beta-synthase. Members of | 100.0 | |
| cd06448 | 316 | L-Ser-dehyd Serine dehydratase is a pyridoxal phos | 100.0 | |
| PRK06110 | 322 | hypothetical protein; Provisional | 100.0 | |
| PRK08639 | 420 | threonine dehydratase; Validated | 100.0 | |
| PRK02991 | 441 | D-serine dehydratase; Provisional | 100.0 | |
| PRK06721 | 352 | threonine synthase; Reviewed | 100.0 | |
| TIGR02035 | 431 | D_Ser_am_lyase D-serine ammonia-lyase. This family | 100.0 | |
| PRK08197 | 394 | threonine synthase; Validated | 100.0 | |
| TIGR01127 | 380 | ilvA_1Cterm threonine dehydratase, medium form. A | 100.0 | |
| PRK07334 | 403 | threonine dehydratase; Provisional | 100.0 | |
| PRK06608 | 338 | threonine dehydratase; Provisional | 100.0 | |
| PRK06815 | 317 | hypothetical protein; Provisional | 100.0 | |
| TIGR01124 | 499 | ilvA_2Cterm threonine ammonia-lyase, biosynthetic, | 100.0 | |
| PLN02550 | 591 | threonine dehydratase | 100.0 | |
| PRK07409 | 353 | threonine synthase; Validated | 100.0 | |
| cd01562 | 304 | Thr-dehyd Threonine dehydratase: The first step in | 100.0 | |
| PRK08246 | 310 | threonine dehydratase; Provisional | 100.0 | |
| PRK08813 | 349 | threonine dehydratase; Provisional | 100.0 | |
| PRK09224 | 504 | threonine dehydratase; Reviewed | 100.0 | |
| PRK06260 | 397 | threonine synthase; Validated | 100.0 | |
| cd01563 | 324 | Thr-synth_1 Threonine synthase is a pyridoxal phos | 100.0 | |
| PRK06381 | 319 | threonine synthase; Validated | 100.0 | |
| PRK08329 | 347 | threonine synthase; Validated | 100.0 | |
| PRK04346 | 397 | tryptophan synthase subunit beta; Validated | 100.0 | |
| PLN02569 | 484 | threonine synthase | 100.0 | |
| PRK13028 | 402 | tryptophan synthase subunit beta; Provisional | 100.0 | |
| PRK08206 | 399 | diaminopropionate ammonia-lyase; Provisional | 100.0 | |
| PRK05638 | 442 | threonine synthase; Validated | 100.0 | |
| PRK06450 | 338 | threonine synthase; Validated | 100.0 | |
| KOG1250 | 457 | consensus Threonine/serine dehydratases [Amino aci | 100.0 | |
| PLN02618 | 410 | tryptophan synthase, beta chain | 100.0 | |
| cd00640 | 244 | Trp-synth-beta_II Tryptophan synthase beta superfa | 100.0 | |
| COG1350 | 432 | Predicted alternative tryptophan synthase beta-sub | 100.0 | |
| PRK13802 | 695 | bifunctional indole-3-glycerol phosphate synthase/ | 100.0 | |
| TIGR00260 | 328 | thrC threonine synthase. Involved in threonine bio | 100.0 | |
| TIGR00263 | 385 | trpB tryptophan synthase, beta subunit. Tryptophan | 100.0 | |
| cd06446 | 365 | Trp-synth_B Tryptophan synthase-beta: Trptophan sy | 100.0 | |
| TIGR01747 | 376 | diampropi_NH3ly diaminopropionate ammonia-lyase fa | 100.0 | |
| TIGR03528 | 396 | 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Mem | 100.0 | |
| KOG1251 | 323 | consensus Serine racemase [Signal transduction mec | 100.0 | |
| PRK13803 | 610 | bifunctional phosphoribosylanthranilate isomerase/ | 100.0 | |
| KOG1481 | 391 | consensus Cysteine synthase [Amino acid transport | 100.0 | |
| TIGR03844 | 398 | cysteate_syn cysteate synthase. Members of this fa | 100.0 | |
| PF00291 | 306 | PALP: Pyridoxal-phosphate dependent enzyme; InterP | 100.0 | |
| PRK03910 | 331 | D-cysteine desulfhydrase; Validated | 100.0 | |
| cd06449 | 307 | ACCD Aminocyclopropane-1-carboxylate deaminase (AC | 100.0 | |
| TIGR01275 | 311 | ACC_deam_rel pyridoxal phosphate-dependent enzymes | 100.0 | |
| PRK12390 | 337 | 1-aminocyclopropane-1-carboxylate deaminase; Provi | 100.0 | |
| TIGR01274 | 337 | ACC_deam 1-aminocyclopropane-1-carboxylate deamina | 100.0 | |
| COG0133 | 396 | TrpB Tryptophan synthase beta chain [Amino acid tr | 100.0 | |
| KOG1395 | 477 | consensus Tryptophan synthase beta chain [Amino ac | 100.0 | |
| PRK14045 | 329 | 1-aminocyclopropane-1-carboxylate deaminase; Provi | 100.0 | |
| COG0498 | 411 | ThrC Threonine synthase [Amino acid transport and | 100.0 | |
| PRK09225 | 462 | threonine synthase; Validated | 99.95 | |
| cd01560 | 460 | Thr-synth_2 Threonine synthase catalyzes the final | 99.94 | |
| COG2515 | 323 | Acd 1-aminocyclopropane-1-carboxylate deaminase [A | 99.93 | |
| COG3048 | 443 | DsdA D-serine dehydratase [Amino acid transport an | 99.91 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 90.79 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 89.85 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 88.25 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 87.66 | |
| PF03808 | 172 | Glyco_tran_WecB: Glycosyl transferase WecB/TagA/Cp | 87.31 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 87.16 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 87.09 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 86.81 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 86.8 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 86.7 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 86.03 | |
| COG0800 | 211 | Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca | 85.85 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 85.85 | |
| cd08256 | 350 | Zn_ADH2 Alcohol dehydrogenases of the MDR family. | 85.58 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 85.3 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 85.15 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 85.1 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 85.05 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 83.77 | |
| cd08274 | 350 | MDR9 Medium chain dehydrogenases/reductase (MDR)/z | 83.68 | |
| TIGR00670 | 301 | asp_carb_tr aspartate carbamoyltransferase. Ornith | 83.63 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 83.56 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 83.3 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 82.75 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 82.67 | |
| cd08292 | 324 | ETR_like_2 2-enoyl thioester reductase (ETR) like | 82.27 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 82.01 | |
| COG2130 | 340 | Putative NADP-dependent oxidoreductases [General f | 81.37 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 81.08 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 80.83 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 80.46 | |
| cd06533 | 171 | Glyco_transf_WecG_TagA The glycosyltransferase Wec | 80.42 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 80.24 |
| >COG0031 CysK Cysteine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-56 Score=419.45 Aligned_cols=250 Identities=51% Similarity=0.838 Sum_probs=235.3
Q ss_pred hhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHH
Q 019047 97 DVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAA 176 (347)
Q Consensus 97 ~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~ 176 (347)
.+.+.+++|||++++++....+++||+|+|++||+||.|||.|.+++.+|+++|.++||. +|||+|+||+|.+||+.|+
T Consensus 4 ~~~~~iG~TPlvrL~~~~~~~~~~i~~KlE~~NP~gSvKDR~A~~mI~~Ae~~G~l~pG~-tIVE~TSGNTGI~LA~vaa 82 (300)
T COG0031 4 SILDLIGNTPLVRLNRLSPGTGVEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLLKPGG-TIVEATSGNTGIALAMVAA 82 (300)
T ss_pred chHHHhCCCCcEeecccCCCCCceEEEEhhhcCCCCchhHHHHHHHHHHHHHcCCCCCCC-EEEEcCCChHHHHHHHHHH
Confidence 467788999999999999888899999999999999999999999999999999999996 5899999999999999999
Q ss_pred HcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCC-hHHHHHHHHHHHHcCCC-ceecCCCCChHHHHHHHHHHHHHH
Q 019047 177 VKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKG-LRGALDKAEEIVLNTPN-AYMFQQFDNMANLKIHFDSTGPEI 254 (347)
Q Consensus 177 ~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~-~~~a~~~a~~~a~~~~~-~~~~~~~~n~~~~~~g~~ti~~Ei 254 (347)
.+|++++++||++++.+|+++|+.|||+|+.++...+ +.++++++.+++++.|+ .++.+||+|+.|+..||.|+|.||
T Consensus 83 ~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~~~g~~~~a~~~a~el~~~~p~~~~~~~Qf~NpaN~~aH~~tT~~EI 162 (300)
T COG0031 83 AKGYRLIIVMPETMSQERRKLLRALGAEVILTPGAPGNMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTGPEI 162 (300)
T ss_pred HcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCCCCCchHHHHHHHHHHHHhCCCceEchhhcCCCccHHHHHhhhHHHH
Confidence 9999999999999999999999999999999997444 88999999999999988 777889999999999999999999
Q ss_pred HHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccc---------cCCCCCCCchhccccccCeEEEe
Q 019047 255 WEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVI---------SGENAGYVPSILDVQLLDEVIKV 325 (347)
Q Consensus 255 ~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~---------~g~~~~~~p~~l~~~~vd~~v~V 325 (347)
++|+++.+|+||+++||||+++|++++||+.+|++++|+|||.++.++ .|...+++|..+..+.+|+++.|
T Consensus 163 ~~~~~g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S~~~~~G~g~~~i~GIG~~~ip~~~~~~~iD~v~~V 242 (300)
T COG0031 163 WQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVLLSGGEGPHKIEGIGAGFVPENLDLDLIDEVIRV 242 (300)
T ss_pred HHHhCCCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCCcccCCCCCCcccCCCCCCcCCcccccccCceEEEE
Confidence 999988899999999999999999999999999999999999987555 34567889988888999999999
Q ss_pred CHHHHHHHHHHHHHhcCccccC
Q 019047 326 TNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 326 sd~ea~~a~~~La~~eGI~~G~ 347 (347)
+|+|+++++++|+++|||++|+
T Consensus 243 ~d~~A~~~~r~La~~eGilvG~ 264 (300)
T COG0031 243 SDEEAIATARRLAREEGLLVGI 264 (300)
T ss_pred CHHHHHHHHHHHHHHhCeeecc
Confidence 9999999999999999999996
|
|
| >PLN03013 cysteine synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-56 Score=436.05 Aligned_cols=255 Identities=65% Similarity=1.100 Sum_probs=236.2
Q ss_pred chhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHH
Q 019047 93 NIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIA 172 (347)
Q Consensus 93 ~~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA 172 (347)
...+++.+.+++|||++++.+.+..|++||+|+|++|||||||||+|.+++..++++|.+.+|++.||++|+||||.|+|
T Consensus 112 ~~~~~i~~~iG~TPLv~l~~l~~~~g~~Iy~KlE~lNPtGSfKdR~A~~~l~~a~~~G~l~pG~~~VVeaSSGN~G~ALA 191 (429)
T PLN03013 112 NIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLA 191 (429)
T ss_pred HHHHHHHhcCCCCCeEECcccccccCCeEEEEeccCCCccccHHHHHHHHHHHHHHcCCcCCCCcEEEEECCcHHHHHHH
Confidence 35678899999999999999988878899999999999999999999999999999999999977799999999999999
Q ss_pred HHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHH
Q 019047 173 FVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGP 252 (347)
Q Consensus 173 ~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~ 252 (347)
++|+.+|++|+||||+++++.|+++|+.|||+|+.+++..+++++++.|.++++++++++|++||+|+.++..||+|+|+
T Consensus 192 ~~a~~~G~~~~VvvP~~~s~~K~~~ira~GAeVi~v~~~~~~~~a~~~A~ela~~~~g~~~~~qy~Np~n~~ah~~ttg~ 271 (429)
T PLN03013 192 FIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGP 271 (429)
T ss_pred HHHHHcCCCEEEEECCCCcHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHhhcCCeEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987656778999999999887789999999999998779999999
Q ss_pred HHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCcccc----------CCCCCCCchhccccccCeE
Q 019047 253 EIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVIS----------GENAGYVPSILDVQLLDEV 322 (347)
Q Consensus 253 Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~----------g~~~~~~p~~l~~~~vd~~ 322 (347)
||++|+++++|+||+|+|+||+++|+++++|+.+|+++||||||.+++.+. |...+++|+.+.+..+|++
T Consensus 272 EI~eq~~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigVep~gs~~l~~g~~~~~~i~Glg~~~ip~~~~~~~vD~v 351 (429)
T PLN03013 272 EIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFIPKNLDQKIMDEV 351 (429)
T ss_pred HHHHhcCCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEEEeCCCchhhCCCCCCcccCcccCCcCCHhHHHHhccEE
Confidence 999999778999999999999999999999999999999999999986553 2334566888888889999
Q ss_pred EEeCHHHHHHHHHHHHHhcCccccC
Q 019047 323 IKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 323 v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
+.|+|+|+++++++|++++||++||
T Consensus 352 v~VsD~ea~~a~r~La~~eGi~vG~ 376 (429)
T PLN03013 352 IAISSEEAIETAKQLALKEGLMVGI 376 (429)
T ss_pred EEECHHHHHHHHHHHHHHcCCEEec
Confidence 9999999999999999999999996
|
|
| >PLN02565 cysteine synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-54 Score=416.35 Aligned_cols=253 Identities=66% Similarity=1.092 Sum_probs=229.6
Q ss_pred hhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHH
Q 019047 95 AEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFV 174 (347)
Q Consensus 95 ~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~a 174 (347)
.+.++..+++|||++++.++..++++||+|+|++|||||||||+|.+++..+.+.|.+.+|.+.||++|+||||.|||++
T Consensus 6 ~~~~~~~ig~TPLv~l~~l~~~~~~~i~~K~E~~nPtGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA~~ 85 (322)
T PLN02565 6 AKDVTELIGKTPLVYLNNVVDGCVARIAAKLEMMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLAFM 85 (322)
T ss_pred hhhHHHHhCCCceEEccccCCCCCceEEEEecccCCccchHHHHHHHHHHHHHHcCCCCCCCcEEEEECCChHHHHHHHH
Confidence 34578899999999998887666789999999999999999999999999999999888887779999999999999999
Q ss_pred HHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHH
Q 019047 175 AAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEI 254 (347)
Q Consensus 175 a~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei 254 (347)
|+.+|++|+||||+++++.|+++|+.|||+|+.+++..+++++++.|.+++++.++++++++|+|+.++..||+|+|+||
T Consensus 86 a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~n~~n~~~~~~t~a~Ei 165 (322)
T PLN02565 86 AAAKGYKLIITMPASMSLERRIILLAFGAELVLTDPAKGMKGAVQKAEEILAKTPNSYILQQFENPANPKIHYETTGPEI 165 (322)
T ss_pred HHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCCcHHHHHHHHHHHHhCCCcEeecccCCHhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998765668899999999988768899999999988877999999999
Q ss_pred HHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccccC----------CCCCCCchhccccccCeEEE
Q 019047 255 WEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG----------ENAGYVPSILDVQLLDEVIK 324 (347)
Q Consensus 255 ~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~g----------~~~~~~p~~l~~~~vd~~v~ 324 (347)
++|+++.+|+||+|+|+||+++|++.++|+.+++++||+|||++++.+.+ ...+..|+.+..+.+|+++.
T Consensus 166 ~~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep~~s~~~~~g~~~~~~~~glg~~~~~~~~~~~~vd~~v~ 245 (322)
T PLN02565 166 WKGTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVDLLDEVVQ 245 (322)
T ss_pred HHhcCCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEEecCCCccccCCCCCCccCCCCCCCCCCCcCCHhHCCEEEE
Confidence 99997689999999999999999999999999999999999998865533 22234555566678999999
Q ss_pred eCHHHHHHHHHHHHHhcCccccC
Q 019047 325 VTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 325 Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
|+|+|+++++++|++++|+++||
T Consensus 246 V~d~ea~~a~~~l~~~~gi~vg~ 268 (322)
T PLN02565 246 VSSDEAIETAKLLALKEGLLVGI 268 (322)
T ss_pred ECHHHHHHHHHHHHHHhCcEEec
Confidence 99999999999999999999997
|
|
| >PLN02556 cysteine synthase/L-3-cyanoalanine synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-53 Score=415.47 Aligned_cols=257 Identities=57% Similarity=0.981 Sum_probs=233.6
Q ss_pred CCchhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHH
Q 019047 91 GVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLG 170 (347)
Q Consensus 91 ~~~~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~A 170 (347)
..++.+++.+.+++|||++++++.+.+|++||+|+|++|||||||||+|.+++.+++++|.+.||.+.||++|+||||+|
T Consensus 46 ~~~~~~~v~~~ig~TPl~~l~~l~~~~g~~I~~KlE~~nPtGS~KdR~A~~~l~~a~~~G~i~pG~~~vV~aSsGN~G~a 125 (368)
T PLN02556 46 GTKIKTDASQLIGKTPLVYLNKVTEGCGAYIAAKQEMFQPTSSIKDRPALAMIEDAEKKNLITPGKTTLIEPTSGNMGIS 125 (368)
T ss_pred cchhhhhHHHhcCCCccEEccccccccCCEEEEEecccCCccchHHHHHHHHHHHHHHcCCcCCCCCEEEEeCCchHHHH
Confidence 33345778999999999999999988889999999999999999999999999999999999999878999999999999
Q ss_pred HHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHH
Q 019047 171 IAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDST 250 (347)
Q Consensus 171 lA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti 250 (347)
+|++|+.+|++|+|+||++++..|+.+|+.|||+|+.++...+..+.++++.+++++++++++++||+|+.+++.||.|+
T Consensus 126 lA~~a~~~G~~~~ivvp~~~~~~k~~~lr~~GA~Vi~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~np~~~~~g~~tt 205 (368)
T PLN02556 126 LAFMAAMKGYKMILTMPSYTSLERRVTMRAFGAELVLTDPTKGMGGTVKKAYELLESTPDAFMLQQFSNPANTQVHFETT 205 (368)
T ss_pred HHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCccHHHHHHHHHHHhcCCCCccCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999864445688899999998888899999999999986799999
Q ss_pred HHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccccCC----------CCCCCchhccccccC
Q 019047 251 GPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGE----------NAGYVPSILDVQLLD 320 (347)
Q Consensus 251 ~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~g~----------~~~~~p~~l~~~~vd 320 (347)
|+||++|+.+.+|+||+|+|+||+++|++.++|+.+++++||||||.+++.+.++ ..++.|+.+..+.+|
T Consensus 206 g~EI~eq~~~~~D~vV~~vGtGGt~aGv~~~lk~~~p~~kVigVep~~~~~~~~g~~~~~~i~g~g~~~~p~~~~~~~~d 285 (368)
T PLN02556 206 GPEIWEDTLGQVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGVEPAESNVLNGGKPGPHHITGNGVGFKPDILDMDVME 285 (368)
T ss_pred HHHHHHhcCCCCCEEEEcCCcchHHHHHHHHHHHhCCCCEEEEEeeCCCccccCCCCCCeeeeeccCCCCccccchhhCC
Confidence 9999999867899999999999999999999999999999999999988655332 224446667778899
Q ss_pred eEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 321 EVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 321 ~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
+++.|+|+|+++++++|+++|||++||
T Consensus 286 ~~v~Vsd~ea~~a~r~l~~~eGi~vg~ 312 (368)
T PLN02556 286 KVLEVSSEDAVNMARELALKEGLMVGI 312 (368)
T ss_pred eEEEECHHHHHHHHHHHHHHcCCEEec
Confidence 999999999999999999999999986
|
|
| >PRK11761 cysM cysteine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-53 Score=404.62 Aligned_cols=250 Identities=42% Similarity=0.709 Sum_probs=226.2
Q ss_pred hhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHH
Q 019047 96 EDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVA 175 (347)
Q Consensus 96 ~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa 175 (347)
+++...+++|||+++++|.+..|++||+|+|++|||||||+|+|.+++..++++|.+.+++ .|+++|+||||+|+|++|
T Consensus 4 ~~i~~~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~-~vv~aSsGN~g~alA~~a 82 (296)
T PRK11761 4 PTLEDTIGNTPLVKLQRLPPDRGNTILAKLEGNNPAGSVKDRPALSMIVQAEKRGEIKPGD-TLIEATSGNTGIALAMIA 82 (296)
T ss_pred ccHHHhcCCCceEeccccccCCCCEEEEEEcccCCCCCchhHHHHHHHHHHHHcCCCCCCC-EEEEeCCChHHHHHHHHH
Confidence 5677789999999999998888889999999999999999999999999999999887774 489999999999999999
Q ss_pred HHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHHH
Q 019047 176 AVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIW 255 (347)
Q Consensus 176 ~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei~ 255 (347)
+.+|++|+||||+++++.|+++|+.+||+|+.++...+++++.+.+.+++++. +.+|++||+|+.++..||+|+|+||+
T Consensus 83 ~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~n~~~~~~~~~t~~~Ei~ 161 (296)
T PRK11761 83 AIKGYRMKLIMPENMSQERRAAMRAYGAELILVPKEQGMEGARDLALQMQAEG-EGKVLDQFANPDNPLAHYETTGPEIW 161 (296)
T ss_pred HHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhcc-CCEecCCCCChhhHHHHhhchHHHHH
Confidence 99999999999999999999999999999999996445788888888888875 78899999999988778999999999
Q ss_pred HhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccccCCC---CCCCchhccccccCeEEEeCHHHHHH
Q 019047 256 EDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGEN---AGYVPSILDVQLLDEVIKVTNDEAVN 332 (347)
Q Consensus 256 ~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~g~~---~~~~p~~l~~~~vd~~v~Vsd~ea~~ 332 (347)
+|+++.+|+||+|+|+||+++|++.+||+.+++++||||||.+++.+.|.. ....+..+....+|+++.|+|+|+++
T Consensus 162 eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigVep~~~~~i~g~~~~~~~~~~~~~~~~~vd~~v~V~d~e~~~ 241 (296)
T PRK11761 162 RQTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPEEGSSIPGIRRWPEEYLPKIFDASRVDRVLDVSQQEAEN 241 (296)
T ss_pred HhcCCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEEecCCCCcCcCCCCCCCCcCCcccChhhCCEEEEECHHHHHH
Confidence 999767999999999999999999999999999999999999887776532 22234445567899999999999999
Q ss_pred HHHHHHHhcCccccC
Q 019047 333 MARRLALEEGLLVMC 347 (347)
Q Consensus 333 a~~~La~~eGI~~G~ 347 (347)
++++|++++||++||
T Consensus 242 a~~~l~~~~gi~ve~ 256 (296)
T PRK11761 242 TMRRLAREEGIFCGV 256 (296)
T ss_pred HHHHHHHHhCceEch
Confidence 999999999999997
|
|
| >TIGR01136 cysKM cysteine synthases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-52 Score=400.64 Aligned_cols=248 Identities=57% Similarity=0.922 Sum_probs=226.1
Q ss_pred hhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHc
Q 019047 99 TQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVK 178 (347)
Q Consensus 99 ~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~ 178 (347)
...+++|||++++.|++.+|++||+|+|++|||||||+|++.+++..++++|.+.+++ +|+++|+||||+|+|++|+.+
T Consensus 2 ~~~vg~TPL~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~-~vv~aSsGN~g~alA~~a~~~ 80 (299)
T TIGR01136 2 EELIGNTPLVRLNRLAPGCDARVLAKLEGRNPSGSVKDRIALSMIEDAEKRGLLKPGD-TIIEATSGNTGIALAMVAAAK 80 (299)
T ss_pred ccccCCCceEEccccCCCCCceEEEEEcccCCCCCccHHHHHHHHHHHHHcCCCCCCC-EEEEeCCChHHHHHHHHHHHc
Confidence 3568899999999999988899999999999999999999999999999999877765 489999999999999999999
Q ss_pred CCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHHHHhh
Q 019047 179 GYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDT 258 (347)
Q Consensus 179 Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei~~ql 258 (347)
|++|+||||++++..|+.+|+.+||+|+.++++++++++++++++++++.++++++++|+|+.++..||+|+++||++|+
T Consensus 81 G~~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql 160 (299)
T TIGR01136 81 GYKLILTMPETMSLERRKLLRAYGAELILTPAEEGMKGAIDKAEELAAETNKYVMLDQFENPANPEAHYKTTGPEIWRDT 160 (299)
T ss_pred CCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhhCCCeEecCCCCCchhHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999997766789999999999886568899999999887679999999999999
Q ss_pred CCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccccC----------CCCCCCchhccccccCeEEEeCHH
Q 019047 259 LGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG----------ENAGYVPSILDVQLLDEVIKVTND 328 (347)
Q Consensus 259 ~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~g----------~~~~~~p~~l~~~~vd~~v~Vsd~ 328 (347)
++.||+||+|+|+||+++|++.+||+.+++++||+|||.+++.+.+ ...+..|+.+.++.+|+++.|+|+
T Consensus 161 ~~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~d~~~~V~d~ 240 (299)
T TIGR01136 161 DGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEPAESPVLSGGEPGPHKIQGIGAGFIPKILDLSLIDEVITVSDE 240 (299)
T ss_pred CCCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEEecCCCccccCCCCCCccCCCCCCCCCCccCChhhCCEEEEECHH
Confidence 7689999999999999999999999999999999999998865532 223456677777889999999999
Q ss_pred HHHHHHHHHHHhcCccccC
Q 019047 329 EAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 329 ea~~a~~~La~~eGI~~G~ 347 (347)
|+++++++|++.+||++||
T Consensus 241 e~~~a~~~l~~~~gi~~e~ 259 (299)
T TIGR01136 241 DAIETARRLAREEGILVGI 259 (299)
T ss_pred HHHHHHHHHHHHhCceEcc
Confidence 9999999999999999997
|
This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff. |
| >TIGR01138 cysM cysteine synthase B | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-52 Score=397.91 Aligned_cols=248 Identities=42% Similarity=0.713 Sum_probs=223.4
Q ss_pred hhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHH
Q 019047 98 VTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAV 177 (347)
Q Consensus 98 v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~ 177 (347)
+...+++|||+++++|++..|++||+|+|++|||||||+|++.+++..+++.|.+.+++ .|+++|+||||.|+|++|+.
T Consensus 2 i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~g~-~vv~aSsGN~g~alA~~a~~ 80 (290)
T TIGR01138 2 IEQTVGNTPLVRLQRMGPENGSEVWLKLEGNNPAGSVKDRPALSMIVEAEKRGEIKPGD-VLIEATSGNTGIALAMIAAL 80 (290)
T ss_pred hHHhCCCCceEEccccccCCCCeEEEEEccCCCCccHHHHHHHHHHHHHHHcCCCCCCC-EEEEECCChHHHHHHHHHHH
Confidence 35578999999999999888899999999999999999999999999999999887775 58999999999999999999
Q ss_pred cCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHHHHh
Q 019047 178 KGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWED 257 (347)
Q Consensus 178 ~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei~~q 257 (347)
+|++|+||||+++++.|+++|+.+||+|+.++.+.+++++.+.+.+++++.+ .+|++||+|+.++..||.|+++||++|
T Consensus 81 ~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~~~~~a~~l~~~~~-~~~~~~~~~~~~~~~~~~t~~~Ei~~q 159 (290)
T TIGR01138 81 KGYRMKLLMPDNMSQERKAAMRAYGAELILVTKEEGMEGARDLALELANRGE-GKLLDQFNNPDNPYAHYTSTGPEIWQQ 159 (290)
T ss_pred cCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCC-CCCCCccCCcccHHHHhHhHHHHHHHH
Confidence 9999999999999999999999999999999865457888899999998874 468899999988866899999999999
Q ss_pred hCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccccCCC---CCCCchhccccccCeEEEeCHHHHHHHH
Q 019047 258 TLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGEN---AGYVPSILDVQLLDEVIKVTNDEAVNMA 334 (347)
Q Consensus 258 l~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~g~~---~~~~p~~l~~~~vd~~v~Vsd~ea~~a~ 334 (347)
+++++|+||+|+|+||+++|++.++|+.+++++||+|||.+++.+.|.. .+..|..+....+|+++.|+|+|+++++
T Consensus 160 ~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~Vep~~~~~~~g~~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~ 239 (290)
T TIGR01138 160 TGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQPEEGSSIPGIRRWPTEYLPGIFDASLVDRVLDIHQRDAENTM 239 (290)
T ss_pred cCCCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccCCCCCCCCcCCcccChhhCcEEEEECHHHHHHHH
Confidence 9778999999999999999999999999999999999999886665532 2344444556679999999999999999
Q ss_pred HHHHHhcCccccC
Q 019047 335 RRLALEEGLLVMC 347 (347)
Q Consensus 335 ~~La~~eGI~~G~ 347 (347)
++|++.+||++||
T Consensus 240 ~~l~~~~gi~~g~ 252 (290)
T TIGR01138 240 RELAVREGIFCGV 252 (290)
T ss_pred HHHHHHhCceEcH
Confidence 9999999999987
|
Alternate name: O-acetylserine (thiol)-lyase |
| >TIGR01139 cysK cysteine synthase A | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-52 Score=396.18 Aligned_cols=247 Identities=56% Similarity=0.905 Sum_probs=221.6
Q ss_pred hhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHc
Q 019047 99 TQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVK 178 (347)
Q Consensus 99 ~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~ 178 (347)
..++++|||+++++ ....|++||+|+|++|||||||+|++.+++.+++++|.+.+|. +|+++|+||||+|+|++|+.+
T Consensus 2 ~~~~g~TPl~~~~~-~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~-~vv~aSsGN~g~alA~~a~~~ 79 (298)
T TIGR01139 2 SELIGNTPLVRLNR-IEGCNANVFVKLEGRNPSGSVKDRIALNMIWDAEKRGLLKPGK-TIVEPTSGNTGIALAMVAAAR 79 (298)
T ss_pred ccccCCCceEEccc-cCCCCceEEEEEcccCCCCcchHHHHHHHHHHHHHcCCCCCCC-EEEEeCCChhHHHHHHHHHHc
Confidence 45789999999998 4566889999999999999999999999999999999877765 489999999999999999999
Q ss_pred CCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCC-ceecCCCCChHHHHHHHHHHHHHHHHh
Q 019047 179 GYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPN-AYMFQQFDNMANLKIHFDSTGPEIWED 257 (347)
Q Consensus 179 Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~-~~~~~~~~n~~~~~~g~~ti~~Ei~~q 257 (347)
|++|+||||+++++.|+++|+.+||+|+.++++++++++++++.+++++.++ ++++++|+|+.++..||+|+++||++|
T Consensus 80 Gl~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q 159 (298)
T TIGR01139 80 GYKLILTMPETMSIERRKLLKAYGAELVLTPGAEGMKGAIAKAEEIAASTPNSYFMLQQFENPANPEIHRKTTGPEIWRD 159 (298)
T ss_pred CCeEEEEeCCccCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCcEEcccccCCcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999876567888999999988754 458999999987777999999999999
Q ss_pred hCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccccC----------CCCCCCchhccccccCeEEEeCH
Q 019047 258 TLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG----------ENAGYVPSILDVQLLDEVIKVTN 327 (347)
Q Consensus 258 l~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~g----------~~~~~~p~~l~~~~vd~~v~Vsd 327 (347)
+++.||+||+|+|+||+++|++.+|++.+++++||+|||.+++.+.+ ...+..++.+..+.+|+++.|+|
T Consensus 160 ~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~V~d 239 (298)
T TIGR01139 160 TDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVEPAESPVLSGGKPGPHKIQGIGAGFIPKNLNRSVIDEVITVSD 239 (298)
T ss_pred hCCCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEEEecCCCcccCCCCCCCCCCCCCCCCCCCCccChhhCCEEEEECH
Confidence 97679999999999999999999999999999999999998755432 23344566666778999999999
Q ss_pred HHHHHHHHHHHHhcCccccC
Q 019047 328 DEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 328 ~ea~~a~~~La~~eGI~~G~ 347 (347)
+|+++++++|+++|||++||
T Consensus 240 ~e~~~a~~~l~~~~gi~~~p 259 (298)
T TIGR01139 240 EEAIETARRLAAEEGILVGI 259 (298)
T ss_pred HHHHHHHHHHHHhcCceEcc
Confidence 99999999999999999997
|
This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate. |
| >PLN00011 cysteine synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-52 Score=399.26 Aligned_cols=253 Identities=59% Similarity=0.972 Sum_probs=227.5
Q ss_pred hhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHH
Q 019047 95 AEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFV 174 (347)
Q Consensus 95 ~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~a 174 (347)
.+.+...+++|||++++++.+..|++||+|+|++|||||||+|++.+++..++++|.+.|+.+.||++|+||||+|+|++
T Consensus 8 ~~~~~~~~g~TPl~~l~~l~~~~g~~i~~K~E~~nPtGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~alA~~ 87 (323)
T PLN00011 8 KNDVTELIGNTPMVYLNNIVDGCVARIAAKLEMMEPCSSVKDRIAYSMIKDAEDKGLITPGKSTLIEATAGNTGIGLACI 87 (323)
T ss_pred HhhHHHHhCCCceEEccccCCCCCceEEEEecccCCccccchHHHHHHHHHHHHcCCCCCCCcEEEEeCCChHHHHHHHH
Confidence 34577789999999999988776789999999999999999999999999999999998886678999999999999999
Q ss_pred HHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHH
Q 019047 175 AAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEI 254 (347)
Q Consensus 175 a~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei 254 (347)
|+.+|++|+||||+++++.|+++|+.+||+|+.++.+.+.++.++++.+++++.++++++++|+|+.++..||.++|+||
T Consensus 88 a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~n~~n~~~~~~t~~~EI 167 (323)
T PLN00011 88 GAARGYKVILVMPSTMSLERRIILRALGAEVHLTDQSIGLKGMLEKAEEILSKTPGGYIPQQFENPANPEIHYRTTGPEI 167 (323)
T ss_pred HHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCcChHHHHHHHHHHHHhCCCeEEeccccCCccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999765556778889888887667899999998888767999999999
Q ss_pred HHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccccC----------CCCCCCchhccccccCeEEE
Q 019047 255 WEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG----------ENAGYVPSILDVQLLDEVIK 324 (347)
Q Consensus 255 ~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~g----------~~~~~~p~~l~~~~vd~~v~ 324 (347)
++|+.+++|+||+|+|+||+++|++.++|+.+++++||||||.+++.+.+ ...+..|..+....+|+++.
T Consensus 168 ~~q~~~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvigVe~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~v~ 247 (323)
T PLN00011 168 WRDSAGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVEPVESAVLSGGQPGPHLIQGIGSGIIPFNLDLTIVDEIIQ 247 (323)
T ss_pred HHhcCCCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEEEEecCCCcccCCCCCCCCCCCCCCCCCCCcccChhhCCeEEE
Confidence 99997689999999999999999999999999999999999998865533 22234555556677999999
Q ss_pred eCHHHHHHHHHHHHHhcCccccC
Q 019047 325 VTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 325 Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
|+|+|+++++++|++++||++||
T Consensus 248 V~d~e~~~a~~~l~~~~Gi~~~~ 270 (323)
T PLN00011 248 VTGEEAIETAKLLALKEGLLVGI 270 (323)
T ss_pred ECHHHHHHHHHHHHHhcCCeEcc
Confidence 99999999999999999999986
|
|
| >PRK12391 tryptophan synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-51 Score=407.22 Aligned_cols=300 Identities=18% Similarity=0.186 Sum_probs=243.7
Q ss_pred CCcccccccccccccccccc------cCCCCCCCCcccchhhHHHHHHHhc---cCCCCchhhhhhhccCCCceeecccc
Q 019047 43 INGALATRRRILPIVASAKA------GAAASSSSSSLYATSTREIEKEEGN---DFHGVNIAEDVTQLIGRTPMVYLNKV 113 (347)
Q Consensus 43 ~~~~~~~r~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~TPLv~~~~l 113 (347)
+...|+++|++...|.+.++ .+.++.++.++.+.++.++++|+.. |+|+++...+++..+++|||+++++|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~~~~TPL~~~~~L 86 (427)
T PRK12391 7 DEDEIPTQWYNILADLPEPLPPPLDPGTGEPVTPEDLAPIFPMELIEQEVSTERYIDIPEEVREIYRLWRPTPLIRARRL 86 (427)
T ss_pred ChhhccccceecCCCCCCCCCCCCCCCCCCCCCHHHhhhcChHHHhhccCCcccccCChHHHHHHHcccCCCCeeEchhh
Confidence 44678899999966554333 3355566677888899999999854 88888888888999999999999999
Q ss_pred ccCCC--CeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCC--
Q 019047 114 TEGCV--GNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS-- 189 (347)
Q Consensus 114 ~~~~g--~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~-- 189 (347)
++.+| ++||+|+|++||+||||+|+|..+++++++.|. ..+++++|+||||+|||++|+.+|++|+||||+.
T Consensus 87 ~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~a~~a~~~G~----~~~vtetgsGN~G~alA~aaa~~Gl~~~V~mp~~s~ 162 (427)
T PRK12391 87 EKALGTPAKIYYKYEGVSPTGSHKPNTAVAQAYYNKKEGI----KRLTTETGAGQWGSALALACALFGLECTVFMVRVSY 162 (427)
T ss_pred HhhhCCCceEEEEEcCCCCCCChHHHHHHHHHHHHHHCCC----CEEEEccCchHHHHHHHHHHHHcCCcEEEEEecCCc
Confidence 98776 699999999999999999999999999999996 4555567899999999999999999999999973
Q ss_pred -CCHHHHHHHHhcCCEEEEECCCCCh----------------HHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHH
Q 019047 190 -TNLERRILLRAFGAEIILTDPEKGL----------------RGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGP 252 (347)
Q Consensus 190 -~~~~~~~~l~~~GA~V~~~~~~~~~----------------~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~ 252 (347)
+++.|+.+|+.|||+|+.++++.+. ..++++|.+.+.+.++.+|+.++.+++. ..||.++|+
T Consensus 163 ~~k~~r~~~mr~~GA~Vi~~~~~~~~~~~~~~~~~~~~~gsl~~ai~~A~e~a~~~~~~~y~~~s~~~~~-~~~~~~ig~ 241 (427)
T PRK12391 163 EQKPYRRSLMETYGAEVIPSPSDLTEAGRKILAEDPDHPGSLGIAISEAVEDAAKRPDTKYALGSVLNHV-LLHQTVIGL 241 (427)
T ss_pred ccCHHHHHHHHHCCCEEEEECCchhhhhhhhhhcCccccccHHHHHHHHHHHHHhCCCcEEEcCCCCcHH-HhhHHHHHH
Confidence 5789999999999999999864321 1268888888877666666655554444 469999999
Q ss_pred HHHHhhC---CCCCEEEEecCcchHHHHHHHHHHh---cC-CCCeEEEEcCCCCccccCC--------------------
Q 019047 253 EIWEDTL---GCVDIFVAAIGTGGTITGTGRFLKM---MN-KEIKVVGVEPAERSVISGE-------------------- 305 (347)
Q Consensus 253 Ei~~ql~---~~~D~vv~pvG~Gg~~~Gi~~~~k~---~~-~~~~vigVep~~~~~~~g~-------------------- 305 (347)
||++|++ ..||+||+|+|+|||++|++.+|.+ .+ +++|||+|||.+|+.++++
T Consensus 242 Ei~~Ql~~~g~~pD~Vv~~vG~Gg~~aGi~~~f~~~~~~g~~~~riiaVEp~~~~~l~~g~~~~~~gd~~~~~p~~~~~~ 321 (427)
T PRK12391 242 EAKKQLELAGEYPDVVIGCVGGGSNFAGLAFPFLGDKLEGKKDTRFIAVEPAACPTLTKGEYAYDFGDTAGLTPLLKMYT 321 (427)
T ss_pred HHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHHHhcCCCCceEEEEeeccchhhccccccccccccccCCccceeEe
Confidence 9999996 3799999999999999999986633 24 7899999999998665431
Q ss_pred -CCCCCchhc-----------------cccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 306 -NAGYVPSIL-----------------DVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 306 -~~~~~p~~l-----------------~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
..+++|..+ ....+++++.|+|+|+++|++.|+++|||++||
T Consensus 322 lG~~~~p~~~~a~gl~~~g~~~~~~~l~~~~~~~~~~V~d~e~~~a~~~~a~~eGi~~~p 381 (427)
T PRK12391 322 LGHDFVPPPIHAGGLRYHGMAPLVSLLVHEGLIEARAYPQTEVFEAAVLFARTEGIVPAP 381 (427)
T ss_pred cCCCCCCccccccccccCCchHHHHHHHhcCceEEEEECHHHHHHHHHHHHHHcCCeech
Confidence 012223222 133456889999999999999999999999987
|
|
| >PRK10717 cysteine synthase A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-51 Score=394.33 Aligned_cols=252 Identities=42% Similarity=0.674 Sum_probs=217.7
Q ss_pred hhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHH
Q 019047 95 AEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFV 174 (347)
Q Consensus 95 ~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~a 174 (347)
++.+...+++|||+++++|++.+|++||+|+|++|||||||+|++.+++.++++.|.+.++. +|+++|+||||+|+|++
T Consensus 4 ~~~~~~~~g~TPL~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~v~~a~~~g~~~~g~-~vv~aSsGN~g~alA~~ 82 (330)
T PRK10717 4 FEDVSDTIGNTPLIRLNRASEATGCEILGKAEFLNPGGSVKDRAALNIIWDAEKRGLLKPGG-TIVEGTAGNTGIGLALV 82 (330)
T ss_pred hhhHHHHhCCCceEEccccCCCCCCeEEEEeeccCCCCCchHHHHHHHHHHHHHcCCCCCCC-EEEEeCCcHHHHHHHHH
Confidence 45678889999999999999988999999999999999999999999999999999877774 48999999999999999
Q ss_pred HHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCC-CC-----hHHHHHHHHHHHHcC-CCceecCCCCChHHHHHHH
Q 019047 175 AAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPE-KG-----LRGALDKAEEIVLNT-PNAYMFQQFDNMANLKIHF 247 (347)
Q Consensus 175 a~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~-~~-----~~~a~~~a~~~a~~~-~~~~~~~~~~n~~~~~~g~ 247 (347)
|+.+|++|+||||+.+++.|+++|+.+||+|+.++++ ++ .+.+.+.+.+++++. .+++|+++|+|+.+++.||
T Consensus 83 a~~~G~~~~vv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~ 162 (330)
T PRK10717 83 AAARGYKTVIVMPETQSQEKKDLLRALGAELVLVPAAPYANPNNYVKGAGRLAEELVASEPNGAIWANQFDNPANREAHY 162 (330)
T ss_pred HHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCcccccccchHHHHHHHHHHHHhhCCCCeEecCCCCChhhHHHHH
Confidence 9999999999999999999999999999999999864 11 222344444444443 2788999999998877799
Q ss_pred HHHHHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCcccc----C------------CCCCCCc
Q 019047 248 DSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVIS----G------------ENAGYVP 311 (347)
Q Consensus 248 ~ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~----g------------~~~~~~p 311 (347)
.|+++||++|+++.+|+||+|+|+||+++|++.+||+.+++++||+|||.+++... | ...+..+
T Consensus 163 ~t~a~Ei~~ql~~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~~vi~Vep~~~~~~~~~~~g~~~~~~~~~~~gl~~~~~~ 242 (330)
T PRK10717 163 ETTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLADPTGSALYSYYKTGELKAEGSSITEGIGQGRIT 242 (330)
T ss_pred HhHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEcCCCCccccccccCCcCCCCCcccCcCCCCcCC
Confidence 99999999999778999999999999999999999999999999999998874331 1 1123345
Q ss_pred hhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 312 SILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 312 ~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
+.+....+|+++.|+|+|+++++++|+++|||++||
T Consensus 243 ~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~vep 278 (330)
T PRK10717 243 ANLEGAPIDDAIRIPDEEALSTAYRLLEEEGLCLGG 278 (330)
T ss_pred cccChhhCCEEEEECHHHHHHHHHHHHHhcCCeEee
Confidence 555556789999999999999999999999999997
|
|
| >COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-52 Score=395.21 Aligned_cols=246 Identities=25% Similarity=0.367 Sum_probs=224.1
Q ss_pred hhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHH
Q 019047 95 AEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFV 174 (347)
Q Consensus 95 ~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~a 174 (347)
.+++...+.+|||++++.|++.+|++||+|+|++||+||||.|||++.+..+.+.+.. ...||++|+||||+++|++
T Consensus 16 ~~ri~~~~~~TPL~~s~~Ls~~~g~~v~lK~E~lQ~~gSFK~RGA~n~i~~Ls~e~~~---~~gViaaSaGNHaQGvA~a 92 (347)
T COG1171 16 AARLKGVVNPTPLQRSPSLSERLGAEIYLKRENLQPVGSFKIRGAYNKLSSLSEEEER---AAGVIAASAGNHAQGVAYA 92 (347)
T ss_pred HHHHhCcccCCCcccchhhHHhhCceEEEeeccCcccccchhhhHHHHHHhcChhhhh---cCceEEecCCcHHHHHHHH
Confidence 3667888889999999999999999999999999999999999999999987644221 3569999999999999999
Q ss_pred HHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHH
Q 019047 175 AAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEI 254 (347)
Q Consensus 175 a~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei 254 (347)
|+++|++++||||.+++..|++.++.|||+|++++. +++++...|.++++++ |+.|+++|++++.+ .||.|+++||
T Consensus 93 a~~lGi~a~IvMP~~tp~~Kv~a~r~~GaeVil~g~--~~dda~~~a~~~a~~~-G~~~i~pfD~p~vi-AGQGTi~lEi 168 (347)
T COG1171 93 AKRLGIKATIVMPETTPKIKVDATRGYGAEVILHGD--NFDDAYAAAEELAEEE-GLTFVPPFDDPDVI-AGQGTIALEI 168 (347)
T ss_pred HHHhCCCEEEEecCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHHc-CCEEeCCCCCccee-ecccHHHHHH
Confidence 999999999999999999999999999999999986 4699999999999997 89999999999887 6999999999
Q ss_pred HHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCc-----cccC------------------CCCCCCc
Q 019047 255 WEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERS-----VISG------------------ENAGYVP 311 (347)
Q Consensus 255 ~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~-----~~~g------------------~~~~~~p 311 (347)
.+|+...||+||||+|+||+++|++.++|...|+++||||||+.++ +..| ..++..+
T Consensus 169 leq~~~~~d~v~vpvGGGGLisGia~~~k~~~p~~~vIGVEp~~a~~~~~Sl~~G~~~~~~~~~~tiaDG~av~~~g~~t 248 (347)
T COG1171 169 LEQLPDLPDAVFVPVGGGGLISGIATALKALSPEIKVIGVEPEGAPSMYASLKAGKIVVVLPDVGTIADGLAVKRPGDLT 248 (347)
T ss_pred HHhccccCCEEEEecCccHHHHHHHHHHHHhCCCCeEEEEeeCCChHHHHHHHcCCceeecCCCCccccccccCCCCHHH
Confidence 9999655799999999999999999999999999999999999873 3333 2346778
Q ss_pred hhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 312 SILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 312 ~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
|.+.++++|++++|+|+|+.++++.|++.++|+++|
T Consensus 249 f~i~~~~vd~~v~V~e~ei~~am~~l~~~~~iI~Ep 284 (347)
T COG1171 249 FEILRELVDDIVLVDEDEICAAMRDLFERTKIIAEP 284 (347)
T ss_pred HHHHHHcCCcEEEECHHHHHHHHHHHHhcCCeeccc
Confidence 889999999999999999999999999999999987
|
|
| >KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-52 Score=392.49 Aligned_cols=256 Identities=60% Similarity=0.965 Sum_probs=242.2
Q ss_pred CchhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHH
Q 019047 92 VNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGI 171 (347)
Q Consensus 92 ~~~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~Al 171 (347)
....+.+.+.+|.|||+.++++++++.++||+|+|.+||+||.|||.++.|+..|+.+|.+.||+++|+++|+||+|.+|
T Consensus 40 ~~~~~~~~~liG~TPlv~ln~i~~g~~~~i~~K~E~~~p~~SvKdRia~sMi~~Ae~~G~i~pg~stliEpTSGNtGigL 119 (362)
T KOG1252|consen 40 ILILWDVRDLIGNTPLVKLNKIAGGCVARIAAKLEYMNPGGSVKDRIAWSMIEDAEKKGLITPGKSTLIEPTSGNTGIGL 119 (362)
T ss_pred hhhhhhHHHHhCCCceEEeccccCCccceEEEEeeecCCcccHHHHHHHHHHHHHHHcCCccCCceEEEecCCCchHHHH
Confidence 44567788999999999999998888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHH---HHHHHHHHHHcCCCceecCCCCChHHHHHHHH
Q 019047 172 AFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRG---ALDKAEEIVLNTPNAYMFQQFDNMANLKIHFD 248 (347)
Q Consensus 172 A~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~---a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ 248 (347)
|++|+..|++|+++||+.++.+|+..|++|||+|+.++....+++ ++..|.++..+.||.+.++||.|+.|...||.
T Consensus 120 A~~~a~~Gyk~i~tmP~~ms~Ek~~~l~a~Gaeii~tp~a~~~~~~e~ai~~a~~l~~~~pna~~l~Qf~np~Np~~hy~ 199 (362)
T KOG1252|consen 120 AYMAALRGYKCIITMPEKMSKEKRILLRALGAEIILTPPAAGMKGPESAIGKAEELLNKTPNAYILDQFHNPGNPLAHYE 199 (362)
T ss_pred HHHHHHcCceEEEEechhhhHHHHHHHHHcCCEEEecChHHccCChHHHHHHHHHHHHhCCChHHHHHhcCCCCcccccc
Confidence 999999999999999999999999999999999999997666666 99999999999999999999999999988999
Q ss_pred HHHHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccccC------------CCCCCCchhccc
Q 019047 249 STGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG------------ENAGYVPSILDV 316 (347)
Q Consensus 249 ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~g------------~~~~~~p~~l~~ 316 (347)
++|.||++|+.+++|.||.++|+|||++|+++++|+.+++++|++|||..+.+..+ .+.+++|..++.
T Consensus 200 ttg~EI~~q~~g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~~~~~~~~g~~~~~I~GIGyg~~p~~ld~ 279 (362)
T KOG1252|consen 200 TTGPEIWRQLDGKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESIVLSGGKPGPTFHKIQGIGYGFIPTTLDT 279 (362)
T ss_pred cccHHHHHHhcCCCCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCcceeccCCCCCCCccceeccccCcCccccch
Confidence 99999999999999999999999999999999999999999999999998866554 445789999999
Q ss_pred cccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 317 QLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 317 ~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
..+|+.+.+.++|++.++++|+.+|||++|.
T Consensus 280 ~~vd~~~~~~~d~A~~~Ar~La~eeGll~G~ 310 (362)
T KOG1252|consen 280 KLVDEVLKVSSDEAIEMARRLALEEGLLVGI 310 (362)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhCeeecc
Confidence 9999999999999999999999999999984
|
|
| >TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-51 Score=403.24 Aligned_cols=295 Identities=18% Similarity=0.161 Sum_probs=233.7
Q ss_pred cccccccccccccccc------cCCCCCCCCcccchhhHHHHHHHhc---cCCCCchhhhhhhcc-CCCceeeccccccC
Q 019047 47 LATRRRILPIVASAKA------GAAASSSSSSLYATSTREIEKEEGN---DFHGVNIAEDVTQLI-GRTPMVYLNKVTEG 116 (347)
Q Consensus 47 ~~~r~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~-~~TPLv~~~~l~~~ 116 (347)
|+++|++...+.+.++ .+.++....++..+++.++++|+.. |+++++...+.+..+ ++|||+++++|++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~r~~~~~~~v~~~~~l~g~pTPL~r~~~L~~~ 80 (419)
T TIGR01415 1 IPKHWYNILPDLPEPLPPPLDPEGEEPIAIEKLKRIFPEKLLEQEVSGERWIKIPGEVLKRYAQIGRPTPLIRAKGLEEL 80 (419)
T ss_pred CCCcceecCCCCCCCCCCCCCCCCCCcCCHHHHhhhCcHHHHhccccHhhHHhhHHHHHHHHHhcCCCCCeEEccchhhh
Confidence 4678999866654433 3344445566778899999998855 777776566666667 58999999999997
Q ss_pred CC--CeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCC---CC
Q 019047 117 CV--GNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS---TN 191 (347)
Q Consensus 117 ~g--~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~---~~ 191 (347)
+| ++||+|+|++|||||||+|+|.+++.+++++|. .++++++|+||||+|||++|+.+|++|+||||+. ++
T Consensus 81 lg~~~~Iy~K~E~~nPtGS~K~R~A~~~~~~a~~~G~----~~~vtetssGN~G~alA~aaa~~Gl~~~V~mp~~s~~~k 156 (419)
T TIGR01415 81 LGTPARIYYKYESVSPTGSHKINTAIAQAYYAKIEGA----KRLVTETGAGQWGSALSLAGALFGLECKVFMVRVSFNQK 156 (419)
T ss_pred hCCCceEEEEECCCCCCCCcHHHHHHHHHHHHHHcCC----CeEEEecCchHHHHHHHHHHHHcCCcEEEEEeCCCcccC
Confidence 76 699999999999999999999999999999996 4555678999999999999999999999999984 47
Q ss_pred HHHHHHHHhcCCEEEEECCCCChH----------------HHHHHHHHHHHcCCCc-eecCCCCChHHHHHHHHHHHHHH
Q 019047 192 LERRILLRAFGAEIILTDPEKGLR----------------GALDKAEEIVLNTPNA-YMFQQFDNMANLKIHFDSTGPEI 254 (347)
Q Consensus 192 ~~~~~~l~~~GA~V~~~~~~~~~~----------------~a~~~a~~~a~~~~~~-~~~~~~~n~~~~~~g~~ti~~Ei 254 (347)
+.|+.+|+.|||+|+.++++++.. .++++|.+.++++++. |+..++.| .. ..||+++|+||
T Consensus 157 ~~k~~~m~~~GA~Vi~~~~~~~~~~r~~~~~~p~~~gsl~~ai~~a~e~a~~~~~~~y~~~~~~n-~~-~~h~~~ig~Ei 234 (419)
T TIGR01415 157 PYRKYLMELYGAEVIPSPSEFTEFGREVLKEDPDHPGSLGIAISEAIEYALSDEDTKYSLGSVLN-HV-LLHQTVIGLEA 234 (419)
T ss_pred HHHHHHHHHcCCEEEEECCchhhHHHHhhhcccccccchHHHHHHHHHHHHhCCCCEEEeCCCCc-HH-HHHHHHHHHHH
Confidence 789999999999999998754211 1477888888765444 55555444 34 36999999999
Q ss_pred HHhhCC---CCCEEEEecCcchHHHHHHHHHHhc----CCCCeEEEEcCCCCccccCCC---------------------
Q 019047 255 WEDTLG---CVDIFVAAIGTGGTITGTGRFLKMM----NKEIKVVGVEPAERSVISGEN--------------------- 306 (347)
Q Consensus 255 ~~ql~~---~~D~vv~pvG~Gg~~~Gi~~~~k~~----~~~~~vigVep~~~~~~~g~~--------------------- 306 (347)
++|++. .||+||+|+|+|||++|++.+|.+. .++++||+|||.+|+.++++.
T Consensus 235 ~~Ql~~~g~~pD~vv~~vG~Gg~~~Gi~~~f~~~~l~g~~~~rviaVep~~~~~l~~g~~~yd~~~~~~~~p~~~~~~lG 314 (419)
T TIGR01415 235 KKQMEEAGEDPDVIIGCVGGGSNFAGLAFPFVADKLSGKIDRRFIAAEPKACPTLTRGEYRYDFGDTAGLTPLLKMYTLG 314 (419)
T ss_pred HHHHHhcCCCCCEEEEEeCchHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCChhhhcCcccccccccccCCcceeeeecC
Confidence 999964 5999999999999999999887432 258999999999986554321
Q ss_pred CCCCchhc-----------------cccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 307 AGYVPSIL-----------------DVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 307 ~~~~p~~l-----------------~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.+++|... ..+.+++++.|+|+|+++|+++|+++|||++||
T Consensus 315 ~~~~p~~~~a~gl~~~~~~~~~~~l~~~~~~~~~~V~d~e~~~a~r~la~~eGi~~ep 372 (419)
T TIGR01415 315 HDFIPPPIHAGGLRYHGVAPTLSLLVNLGIVEARAYDQEEAFEAAVIFAKTEGIVPAP 372 (419)
T ss_pred CCCCCcceeccccccCCccHHHHHHhhcCceEEEEECHHHHHHHHHHHHHhcCCcccc
Confidence 12223221 234556789999999999999999999999997
|
This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found. |
| >PLN02970 serine racemase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-51 Score=393.41 Aligned_cols=254 Identities=18% Similarity=0.251 Sum_probs=221.2
Q ss_pred chhhHHHHHHHhccCCCCchhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCC
Q 019047 75 ATSTREIEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITP 154 (347)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~ 154 (347)
.+++.++...+ +++...+++|||+++++|++.+|++||+|+|++|||||||||++.+++.++++++.
T Consensus 8 ~~~~~~i~~a~----------~~i~~~i~~TPL~~~~~l~~~~g~~i~~K~E~~nptGSfKdRga~~~i~~~~~~~~--- 74 (328)
T PLN02970 8 AADLSSIREAR----------KRIAPFIHRTPVLTSSSLDALAGRSLFFKCECFQKGGAFKFRGACNAIFSLSDDQA--- 74 (328)
T ss_pred CcCHHHHHHHH----------HHHhCcCCCCCeeechhhHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHHhhHhhc---
Confidence 33555665543 55677889999999999998888999999999999999999999999999886554
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceec
Q 019047 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMF 234 (347)
Q Consensus 155 g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~ 234 (347)
.+.||++|+||||.|+|++|+.+|++|+||||+++++.|+++|+.|||+|+.++. +++++.+.+.+++++ ++++|+
T Consensus 75 -~~~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~la~~-~g~~~~ 150 (328)
T PLN02970 75 -EKGVVTHSSGNHAAALALAAKLRGIPAYIVVPKNAPACKVDAVIRYGGIITWCEP--TVESREAVAARVQQE-TGAVLI 150 (328)
T ss_pred -CCeEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhcCCEEEEeCC--CHHHHHHHHHHHHHh-cCCEEe
Confidence 3569999999999999999999999999999999999999999999999999986 467888889888887 489999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccc-----cCC----
Q 019047 235 QQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVI-----SGE---- 305 (347)
Q Consensus 235 ~~~~n~~~~~~g~~ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~-----~g~---- 305 (347)
++|+|+.++ .||+|+|+||++|+. .||+||+|+|+||+++|++.+||+.+++++||+|||.+++.+ .|.
T Consensus 151 ~~~~n~~~~-~g~~t~g~Ei~~ql~-~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~Vep~~~~~~~~s~~~g~~~~~ 228 (328)
T PLN02970 151 HPYNDGRVI-SGQGTIALEFLEQVP-ELDVIIVPISGGGLISGIALAAKAIKPSIKIIAAEPKGADDAAQSKAAGEIITL 228 (328)
T ss_pred CCCCCcchh-hehHHHHHHHHHhcc-CCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEEEEECCCcHHHHHHHcCCceeC
Confidence 999999887 599999999999995 699999999999999999999999999999999999987533 221
Q ss_pred -C-----------CCCCchhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 306 -N-----------AGYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 306 -~-----------~~~~p~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
. .+..++...++.+|+++.|+|+|+++++++|+++|||++||
T Consensus 229 ~~~~tia~gl~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~la~~~gi~ve~ 282 (328)
T PLN02970 229 PVTNTIADGLRASLGDLTWPVVRDLVDDVITVDDKEIIEAMKLCYERLKVVVEP 282 (328)
T ss_pred CCCCCccccccCCcCHHHHHHHHhhCCEEEEECHHHHHHHHHHHHHhcCcEEeH
Confidence 0 11122445567899999999999999999999999999997
|
|
| >cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-50 Score=381.91 Aligned_cols=244 Identities=52% Similarity=0.863 Sum_probs=218.9
Q ss_pred CCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcE
Q 019047 103 GRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKL 182 (347)
Q Consensus 103 ~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~ 182 (347)
++|||+++++|++..|++||+|+|++|||||||+|++.+.+.+++++|..+++. .|+++|+||||+|+|++|+.+|++|
T Consensus 1 g~TPl~~~~~l~~~~g~~i~~K~E~~~ptgS~K~R~a~~~l~~a~~~g~~~~~~-~vv~~SsGN~g~alA~~a~~~G~~~ 79 (291)
T cd01561 1 GNTPLVRLNRLSPGTGAEIYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPGT-TIIEPTSGNTGIGLAMVAAAKGYRF 79 (291)
T ss_pred CCCCEEEccccCCCCCCeEEEEecccCCCCcchHHHHHHHHHHHHHcCCCCCCC-EEEEeCCChHHHHHHHHHHHcCCeE
Confidence 589999999999988899999999999999999999999999999999866554 4899999999999999999999999
Q ss_pred EEEeCCCCCHHHHHHHHhcCCEEEEECCCC--ChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHHHHhhCC
Q 019047 183 IVTMPASTNLERRILLRAFGAEIILTDPEK--GLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLG 260 (347)
Q Consensus 183 ~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~--~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei~~ql~~ 260 (347)
+||||.++++.|+++|+.+||+|+.++.++ +.+++++.+.+++++.++++|+++|+|+.+++.|++|+++||.+|+++
T Consensus 80 ~i~vp~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~g~~~t~~~Ei~~ql~~ 159 (291)
T cd01561 80 IIVMPETMSEEKRKLLRALGAEVILTPEAEADGMKGAIAKARELAAETPNAFWLNQFENPANPEAHYETTAPEIWEQLDG 159 (291)
T ss_pred EEEECCCCCHHHHHHHHHcCCEEEEeCCCCcCCHHHHHHHHHHHHhhCCCcEEecCCCCchHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999998754 457888999999888668999999999999864455999999999976
Q ss_pred CCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccccC----------CCCCCCchhccccccCeEEEeCHHHH
Q 019047 261 CVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG----------ENAGYVPSILDVQLLDEVIKVTNDEA 330 (347)
Q Consensus 261 ~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~g----------~~~~~~p~~l~~~~vd~~v~Vsd~ea 330 (347)
.||+||+|+|+||+++|++.+|++..++++||+|||.+++.+.+ ...+..++.+.++.+|+++.|+|+|+
T Consensus 160 ~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~V~d~e~ 239 (291)
T cd01561 160 KVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDPVGSVLFSGGPPGPHKIEGIGAGFIPENLDRSLIDEVVRVSDEEA 239 (291)
T ss_pred CCCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEEecCCCcccCCCCCCCCcCCCCCCCCCCCccCchhCceeEEECHHHH
Confidence 89999999999999999999999999999999999998765522 22234456666678999999999999
Q ss_pred HHHHHHHHHhcCccccC
Q 019047 331 VNMARRLALEEGLLVMC 347 (347)
Q Consensus 331 ~~a~~~La~~eGI~~G~ 347 (347)
+++++.|++++||++||
T Consensus 240 ~~a~~~l~~~~gi~~ep 256 (291)
T cd01561 240 FAMARRLAREEGLLVGG 256 (291)
T ss_pred HHHHHHHHHHhCeeEcc
Confidence 99999999999999997
|
CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine. |
| >PLN02356 phosphateglycerate kinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-50 Score=396.27 Aligned_cols=251 Identities=35% Similarity=0.565 Sum_probs=215.2
Q ss_pred hhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHH
Q 019047 96 EDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVA 175 (347)
Q Consensus 96 ~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa 175 (347)
..+...+++|||+++++|....|++||+|+|++|||||||||+|.+++..|.+.|.++++. +|+++|+||||.|+|++|
T Consensus 45 ~~~~~~ig~TPLv~~~~l~~~~g~~v~~KlE~~nPtGS~KdR~A~~~i~~a~~~g~~~~~g-~VveaSSGN~g~alA~~a 123 (423)
T PLN02356 45 NGLIDAIGNTPLIRINSLSEATGCEILGKCEFLNPGGSVKDRVAVKIIEEALESGQLFPGG-VVTEGSAGSTAISLATVA 123 (423)
T ss_pred hhHHhhcCCCceEECcccccccCCEEEEEeccCCCCCCHHHHHHHHHHHHHHhCCccCCCC-EEEEeCCHHHHHHHHHHH
Confidence 4466778999999999999888899999999999999999999999999999999877764 478899999999999999
Q ss_pred HHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCC-----CCh-HHHH---HHHHHHHHc-------------------
Q 019047 176 AVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPE-----KGL-RGAL---DKAEEIVLN------------------- 227 (347)
Q Consensus 176 ~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~-----~~~-~~a~---~~a~~~a~~------------------- 227 (347)
+.+|++|+||||+++++.|+++|+.|||+|+.+++. .++ ..+. +++.+++++
T Consensus 124 a~~G~~~~ivvP~~~s~~K~~~ir~~GAeVi~v~~~~~~~~~~~~~~a~~~~~~a~e~a~~~~~~~~~~~~~~~~~~~~~ 203 (423)
T PLN02356 124 PAYGCKCHVVIPDDVAIEKSQILEALGATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSETDGIHLEKTNGCI 203 (423)
T ss_pred HHcCCcEEEEECCCCcHHHHHHHHHcCCEEEEECCccCCCcchhHHHHHHHHHHHHHHHHHhhhcccccccccccccccc
Confidence 999999999999999999999999999999999641 111 1122 334444443
Q ss_pred -------------CCCceecCCCCChHHHHHHHHHHHHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEE
Q 019047 228 -------------TPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGV 294 (347)
Q Consensus 228 -------------~~~~~~~~~~~n~~~~~~g~~ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigV 294 (347)
.++.+|++||+|+.++..|+..+|+||++|+++++|+||+|+|+||+++|+++++|+.+|+++||+|
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~q~~n~~n~~ahg~gTg~EI~eQl~g~~D~vVv~vGtGGti~Gva~~lK~~~P~vkVigV 283 (423)
T PLN02356 204 SEEEKENSLFSSSCTGGFFADQFENLANFRAHYEGTGPEIWEQTQGNLDAFVAAAGTGGTLAGVSRFLQEKNPNIKCFLI 283 (423)
T ss_pred ccccccccccccCCCCcEecCccCCcchHHHHHhhHHHHHHHhcCCCCCEEEeCCCchHHHHHHHHHHHHhCCCCEEEEE
Confidence 1478899999999997677666699999999778999999999999999999999999999999999
Q ss_pred cCCCCccc---------------------------cCCCCCCCchhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 295 EPAERSVI---------------------------SGENAGYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 295 ep~~~~~~---------------------------~g~~~~~~p~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
||.++... .|...+..|+.+....+|+++.|+|+|+++++++|++++||++||
T Consensus 284 ep~~s~~~~~~~~~~~~~~s~~~G~~~~~~~~tia~Gig~~~~~~~~~~~~vD~~v~Vsd~ea~~a~r~L~~~~Gl~vg~ 363 (423)
T PLN02356 284 DPPGSGLFNKVTRGVMYTREEAEGRRLKNPFDTITEGIGINRLTQNFLMAKLDGAFRGTDKEAVEMSRYLLKNDGLFVGS 363 (423)
T ss_pred ecCCCccccccccchhhhhhhhcCCccCCCCCeecCcCcCCCCChhHhHHhCCcEEEECHHHHHHHHHHHHHHCCeeEeE
Confidence 99876422 122234566677778899999999999999999999999999997
|
|
| >PRK08526 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-50 Score=400.54 Aligned_cols=245 Identities=22% Similarity=0.336 Sum_probs=218.0
Q ss_pred hhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHH
Q 019047 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (347)
Q Consensus 94 ~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~ 173 (347)
..+++...+++|||+++++|++.+|++||+|+|++|||||||+|+|.+.+..+.+.+. .+.||++|+||||+++|+
T Consensus 10 a~~~i~~~i~~TPl~~~~~Ls~~~g~~iylK~E~lqptGSfK~RgA~n~i~~l~~~~~----~~gVV~aSaGNhg~avA~ 85 (403)
T PRK08526 10 AKQRISGFVNKTPFAYAPFLSKISGAEVYLKKENLQITGAYKIRGAYNKIANLSEEQK----QHGVIAASAGNHAQGVAI 85 (403)
T ss_pred HHHHHhCcCCCCCccchHHHHHHhCCeEEEEecCCCCCCCCHHHHHHHHHHhccHhhc----CCEEEEECccHHHHHHHH
Confidence 4467888899999999999999889999999999999999999999999998886654 356899999999999999
Q ss_pred HHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHH
Q 019047 174 VAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPE 253 (347)
Q Consensus 174 aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~E 253 (347)
+|+.+|++|+||||++++..|++.++.|||+|+.++. ++++++.+|.+++++. +++|+++|+|+.++ .||+|+|+|
T Consensus 86 aa~~~Gi~~~IvmP~~~p~~k~~~~r~~GA~Vv~~g~--~~~~a~~~a~~~a~~~-g~~~v~p~~~~~~i-~G~gtia~E 161 (403)
T PRK08526 86 SAKKFGIKAVIVMPEATPLLKVSGTKALGAEVILKGD--NYDEAYAFALEYAKEN-NLTFIHPFEDEEVM-AGQGTIALE 161 (403)
T ss_pred HHHHcCCCEEEEEcCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEeeCCCCCHHHH-hhhHHHHHH
Confidence 9999999999999999999999999999999999985 5789999999999886 78999999999886 699999999
Q ss_pred HHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccc-----cCC-----------------CCCCCc
Q 019047 254 IWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVI-----SGE-----------------NAGYVP 311 (347)
Q Consensus 254 i~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~-----~g~-----------------~~~~~p 311 (347)
|++|+ +.+|+||+|+|+||+++|++.++|+.+|+++||||||++++.+ .|. .++...
T Consensus 162 I~eq~-~~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvigVep~~~~~~~~s~~~g~~~~~~~~~tiadgiav~~~~~~~ 240 (403)
T PRK08526 162 MLDEI-SDLDMVVVPVGGGGLISGIASAAKQINPNIKIIGVGAKGAPAMYESFHAKKIINSKSVRTIADGIAVRDASPIN 240 (403)
T ss_pred HHHhc-CCCCEEEEecChHHHHHHHHHHHHHhCCCCEEEEEEECCCChHHHHHHcCCcccCCCCCceeccccCCCCCHHH
Confidence 99999 4799999999999999999999999999999999999988543 221 011222
Q ss_pred hhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 312 SILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 312 ~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
+.+.++.+|++++|+|+|+.+|++.|++++||+++|
T Consensus 241 ~~~~~~~vd~~v~V~d~ei~~A~~~l~~~~gi~ve~ 276 (403)
T PRK08526 241 LAIILECVDDFVQVDDEEIANAILFLLEKQKIVVEG 276 (403)
T ss_pred HHHHHHhCCEEEEECHHHHHHHHHHHHHhcCcEeeH
Confidence 333457899999999999999999999999999986
|
|
| >PRK07476 eutB threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-50 Score=390.11 Aligned_cols=245 Identities=23% Similarity=0.287 Sum_probs=218.3
Q ss_pred hhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHH
Q 019047 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (347)
Q Consensus 94 ~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~ 173 (347)
.++++...+++|||+++++|++.+|.+||+|+|++|||||||+|++.+++.++++.|. .+.||++|+||||+|+|+
T Consensus 9 a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~a~~~~~----~~gvv~aSsGN~g~alA~ 84 (322)
T PRK07476 9 ARRRIAGRVRRTPLVASASLSARAGVPVWLKLETLQPTGSFKLRGATNALLSLSAQER----ARGVVTASTGNHGRALAY 84 (322)
T ss_pred HHHHHhCCCCCCCceechhhHHhhCCeEEEEEccCCCCCCchHHHHHHHHHhhhhhhh----CCeEEEECCChHHHHHHH
Confidence 4577888999999999999999888999999999999999999999999999999886 345899999999999999
Q ss_pred HHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHH
Q 019047 174 VAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPE 253 (347)
Q Consensus 174 aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~E 253 (347)
+|+.+|++|+||||+++++.|+.+|+.|||+|+.++. +++++++.+.+++++. +++|+++|+|+.++ .||+|+++|
T Consensus 85 ~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~~-~g~~t~~~E 160 (322)
T PRK07476 85 AARALGIRATICMSRLVPANKVDAIRALGAEVRIVGR--SQDDAQAEVERLVREE-GLTMVPPFDDPRII-AGQGTIGLE 160 (322)
T ss_pred HHHHhCCCEEEEeCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEeCCCCCccee-echhHHHHH
Confidence 9999999999999999999999999999999999985 3678889999988876 77999999999887 599999999
Q ss_pred HHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccc-----cCC----------------C---CCC
Q 019047 254 IWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVI-----SGE----------------N---AGY 309 (347)
Q Consensus 254 i~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~-----~g~----------------~---~~~ 309 (347)
|++|+. .+|+||+|+|+||+++|++.+||..+++++||||||.+++.+ .|. . ++.
T Consensus 161 i~~Q~~-~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigVe~~~~~~~~~s~~~g~~~~~~~~~t~a~~l~~~~~~~~~ 239 (322)
T PRK07476 161 ILEALP-DVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGVSMERGAAMHASLAAGRPVQVEEVPTLADSLGGGIGLDNR 239 (322)
T ss_pred HHHhCc-CCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEEEECCchHHHHHHHcCCceeCCCCCCccccccccccCCcH
Confidence 999984 689999999999999999999999999999999999876422 110 0 112
Q ss_pred CchhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 310 VPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 310 ~p~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.++.+.++.+|+++.|+|+|+.+++++|++++||++||
T Consensus 240 ~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~ve~ 277 (322)
T PRK07476 240 YTFAMCRALLDDVVLLDEAEIAAGIRHAYREERLVVEG 277 (322)
T ss_pred HHHHHHHhcCCeEEEECHHHHHHHHHHHHHhcCceEeC
Confidence 23445567899999999999999999999999999986
|
|
| >PRK08198 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-50 Score=398.82 Aligned_cols=245 Identities=28% Similarity=0.413 Sum_probs=220.1
Q ss_pred hhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHH
Q 019047 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (347)
Q Consensus 94 ~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~ 173 (347)
..+++...+++|||+++++|++.+|++||+|+|++|||||||+|+|.+++.++.+++. .+.||++|+||||+++|+
T Consensus 12 a~~~i~~~i~~TPl~~~~~ls~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~alA~ 87 (404)
T PRK08198 12 ARERLKGVVRRTPLEYSRTLSELTGAEVYLKCENLQRTGSFKIRGAYNKIASLSEEER----ARGVVAASAGNHAQGVAY 87 (404)
T ss_pred HHHHHhccCCCCCceehhhHHHHhCCEEEEEECCCCCCCCCHHHHHHHHHHhccHhhc----CCEEEEECCCHHHHHHHH
Confidence 4467888999999999999999889999999999999999999999999999886554 356999999999999999
Q ss_pred HHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHH
Q 019047 174 VAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPE 253 (347)
Q Consensus 174 aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~E 253 (347)
+|+.+|++|+||||++++..|+++++.|||+|+.++. +++++++.+.+++++. +++|+++|+|+.++ .||+|+|+|
T Consensus 88 ~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~~~~~~-~g~~t~a~E 163 (404)
T PRK08198 88 AASLLGIKATIVMPETAPLSKVKATRSYGAEVVLHGD--VYDEALAKAQELAEET-GATFVHPFDDPDVI-AGQGTIGLE 163 (404)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecCCCCCccHH-HHHHHHHHH
Confidence 9999999999999999999999999999999999975 5789999999999886 79999999999887 699999999
Q ss_pred HHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccc-----cCC-----------------CCCCCc
Q 019047 254 IWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVI-----SGE-----------------NAGYVP 311 (347)
Q Consensus 254 i~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~-----~g~-----------------~~~~~p 311 (347)
|++|+ +++|+||+|+|+||+++|++.+||+.+|+++||||||.+++.+ .|. .++..+
T Consensus 164 I~~q~-~~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kiigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~g~~v~~~~~~~ 242 (404)
T PRK08198 164 ILEDL-PDVDTVVVPIGGGGLISGVATAVKALRPEVRVIGVQAEGAPAMPESLAAGRPVELESVDTIADGIAVKRPGDLT 242 (404)
T ss_pred HHHhC-CCCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEEEEEeCCChHHHHHHHcCCCEecCCCCccccccccCCcCHHH
Confidence 99998 4799999999999999999999999999999999999988644 121 123334
Q ss_pred hhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 312 SILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 312 ~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
+.+.++.+|+++.|+|+|+.+|+++|++++|+++||
T Consensus 243 ~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~g~~~e~ 278 (404)
T PRK08198 243 FEIIRELVDDVVTVSDEEIARAILLLLERAKLVVEG 278 (404)
T ss_pred HHHHHHhCCEEEEECHHHHHHHHHHHHHhcCeEEeh
Confidence 555678899999999999999999999999999987
|
|
| >cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-50 Score=392.42 Aligned_cols=244 Identities=21% Similarity=0.264 Sum_probs=212.1
Q ss_pred ccCCCceeeccccccCCC--------CeEEEEeCCCCC-CCchhHHHHHHHHHH-----HHHcCCCCCCC----------
Q 019047 101 LIGRTPMVYLNKVTEGCV--------GNVAAKLESMEP-CRSVKDRIGYSMITD-----AEESGDITPGK---------- 156 (347)
Q Consensus 101 ~~~~TPLv~~~~l~~~~g--------~~Iy~K~E~~~p-tGSfK~Rga~~~~~~-----a~~~G~~~~g~---------- 156 (347)
++++|||+++++|++.+| ++||+|+|++|| |||||||++.+++.. +++.|.++|+.
T Consensus 49 ~~~~TPLv~~~~ls~~~g~~~~~~~~~~v~~K~E~~nP~tGSfKdRgA~~~i~~l~~~~a~~~G~l~pg~~~~~~~~~~~ 128 (404)
T cd06447 49 GIIESPLLPIPRMKQALEKLYHQPIKGRLLLKADSHLPISGSIKARGGIYEVLKHAEKLALEHGLLTLEDDYSKLASEKF 128 (404)
T ss_pred CccCCCceehHHHHHHhccccccCcCceEEEEecCCCCCCCChHHHHHHHHHHHHhHHHHHHhCCCCcccchhhhhhhhh
Confidence 399999999999988654 799999999999 999999999999864 78889888875
Q ss_pred ------eEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCC
Q 019047 157 ------TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPN 230 (347)
Q Consensus 157 ------~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~ 230 (347)
+.||++|+||||.|||++|+.+|++|+||||+++++.|++.|+.|||+|+.+++ +++++++.+.++++++++
T Consensus 129 ~~~~~~~~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~~~~K~~~ira~GAeVv~v~~--~~~~a~~~a~~la~~~~~ 206 (404)
T cd06447 129 RKLFSQYSIAVGSTGNLGLSIGIMAAALGFKVTVHMSADAKQWKKDKLRSKGVTVVEYET--DYSKAVEEGRKQAAADPM 206 (404)
T ss_pred hhcccCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHHCCC
Confidence 479999999999999999999999999999999999999999999999999985 568899999999988767
Q ss_pred ceecCCCCChHHHHHHHHHHHHHHHHhhCC---C-----CCEEEEecCcchHHHHHHHHHHhc-CCCCeEEEEcCCCCcc
Q 019047 231 AYMFQQFDNMANLKIHFDSTGPEIWEDTLG---C-----VDIFVAAIGTGGTITGTGRFLKMM-NKEIKVVGVEPAERSV 301 (347)
Q Consensus 231 ~~~~~~~~n~~~~~~g~~ti~~Ei~~ql~~---~-----~D~vv~pvG~Gg~~~Gi~~~~k~~-~~~~~vigVep~~~~~ 301 (347)
.+|+++++++.. +.||+|+|+||++|+++ + ||+||+|+|+||+++|++.+||+. .++++||+|||+.++.
T Consensus 207 ~~~v~~~n~~~~-iaG~~T~g~EI~eQl~~~~~~vD~~~Pd~VvvpvG~GGli~GIa~~lK~~~~p~~kVigVeP~~ap~ 285 (404)
T cd06447 207 CYFVDDENSRDL-FLGYAVAASRLKAQLAELGIKVDAEHPLFVYLPCGVGGAPGGVAFGLKLIFGDNVHCFFAEPTHSPC 285 (404)
T ss_pred eEeCCCCCchhH-HhhHHHHHHHHHHHhhhccCccccCCCCEEEEecCccHHHHHHHHHHHHhcCCCCEEEEEccCCChH
Confidence 889999765555 47999999999999952 3 558999999999999999999997 7889999999988643
Q ss_pred c-----cCCC-----------------------CCCCchhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 302 I-----SGEN-----------------------AGYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 302 ~-----~g~~-----------------------~~~~p~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
+ .|.. ++..++.+.++.+|+++.|+|+|+++++++|++++||++||
T Consensus 286 ~~~s~~ag~~~~~~~~~~g~~~~TiadGl~~~~p~~~~~~~~~~~vd~~v~Vsd~ei~~a~r~La~~~gi~vep 359 (404)
T cd06447 286 MLLGMATGLHDKISVQDIGIDNRTAADGLAVGRPSGLVGKLMEPLLSGIYTVEDDELYRLLAMLKDSENIEVEP 359 (404)
T ss_pred HHHHHHcCCCccccccccCCCccchhhhhcCCCcchhHHHHHHHhCCcEEEECHHHHHHHHHHHHHHcCcEEeH
Confidence 2 1210 12233445568899999999999999999999999999987
|
D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids. |
| >PRK06382 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-50 Score=397.14 Aligned_cols=245 Identities=22% Similarity=0.347 Sum_probs=219.6
Q ss_pred hhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHH
Q 019047 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (347)
Q Consensus 94 ~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~ 173 (347)
..+++...+++|||+++++|++.+|++||+|+|++|||||||+|+|.+++..+.+.+. ...|+++|+||||.|+|+
T Consensus 15 a~~~~~~~i~~TPl~~~~~ls~~~g~~v~~K~E~~nptGSfK~Rga~~~i~~~~~~~~----~~gvv~aSsGN~g~a~A~ 90 (406)
T PRK06382 15 AKSYLEGYLNRTPLIHSTTFGDEYGGDIYFKLENFQKTGSFKSRGAVFKFSKLSEDEL----RNGVITASAGNHAQGVAY 90 (406)
T ss_pred HHHHHhCcCCCCCeeEhhhhHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHhcchhcc----CCeEEEECCCHHHHHHHH
Confidence 4567888899999999999999889999999999999999999999999988877654 245999999999999999
Q ss_pred HHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHH
Q 019047 174 VAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPE 253 (347)
Q Consensus 174 aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~E 253 (347)
+|+.+|++|+||||++.+..|++.++.|||+|+.+++ +++++.+.|.+++++. +++|+++|+|+.++ .||+|+|+|
T Consensus 91 aa~~~G~~~~ivmp~~~~~~k~~~~~~~GA~Vv~~~~--~~~~a~~~a~~la~~~-~~~~v~~~~~~~~i-~g~~t~~~E 166 (406)
T PRK06382 91 AASINGIDAKIVMPEYTIPQKVNAVEAYGAHVILTGR--DYDEAHRYADKIAMDE-NRTFIEAFNDRWVI-SGQGTIGLE 166 (406)
T ss_pred HHHHcCCCEEEEEcCCCHHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecCccCChHHH-HHHHHHHHH
Confidence 9999999999999999999999999999999999985 4688999999999886 78999999999887 599999999
Q ss_pred HHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccc-----cC--------------C---CCCCCc
Q 019047 254 IWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVI-----SG--------------E---NAGYVP 311 (347)
Q Consensus 254 i~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~-----~g--------------~---~~~~~p 311 (347)
|++|+ +.+|+||+|+|+||+++|++.++|..+++++||||||.+++.+ .| . .++..+
T Consensus 167 i~eq~-~~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vigVe~~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~~~ 245 (406)
T PRK06382 167 IMEDL-PDLDQIIVPVGGGGLISGIALAAKHINPNVKIIGIESELSDSMKASLREGKIVAHTSGVSICDGISVKYPGDLT 245 (406)
T ss_pred HHHhc-CCCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHcCCceecCCCCCccccccCCCccHHH
Confidence 99998 4799999999999999999999999999999999999988543 22 0 122334
Q ss_pred hhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 312 SILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 312 ~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
+.+.++.+|+++.|+|+|+.+|++.|++++||++||
T Consensus 246 ~~~~~~~~d~~v~V~d~ei~~a~~~l~~~~gi~~ep 281 (406)
T PRK06382 246 FDIAKNYVDDIVTVTEESVSKAIYKLFEREKIVAEP 281 (406)
T ss_pred HHHHHHcCCEEEEECHHHHHHHHHHHHHHcCceech
Confidence 556678899999999999999999999999999997
|
|
| >PRK12483 threonine dehydratase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-50 Score=404.70 Aligned_cols=244 Identities=25% Similarity=0.345 Sum_probs=218.8
Q ss_pred hhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHH
Q 019047 96 EDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVA 175 (347)
Q Consensus 96 ~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa 175 (347)
.++...+++|||+++++|++.+|++||+|+|++|||||||+|||++.+..+.+... .+.||++|+||||.+||++|
T Consensus 29 ~~i~~~v~~TPL~~~~~Ls~~~g~~IylK~E~lqptGSfK~RGA~n~i~~l~~~~~----~~GVV~aSaGNha~gvA~aA 104 (521)
T PRK12483 29 ARVYDVARETPLQRAPNLSARLGNQVLLKREDLQPVFSFKIRGAYNKMARLPAEQL----ARGVITASAGNHAQGVALAA 104 (521)
T ss_pred HHHhhhcCCCCeeEchhhhHhhCCEEEEEEcCCCCCCchHHHHHHHHHHHhHHHHh----cCcEEEECCCHHHHHHHHHH
Confidence 57788899999999999999999999999999999999999999999988764332 24599999999999999999
Q ss_pred HHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHHH
Q 019047 176 AVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIW 255 (347)
Q Consensus 176 ~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei~ 255 (347)
+.+|++|+||||.+++..|+..++.|||+|+.+++ +++++.++|.++++++ +++|+++|+|+.++ .||+|+|+||+
T Consensus 105 ~~lGi~~~IvmP~~tp~~Kv~~~r~~GAeVil~g~--~~d~a~~~A~~la~e~-g~~~v~pfdd~~vi-aGqgTig~EI~ 180 (521)
T PRK12483 105 ARLGVKAVIVMPRTTPQLKVDGVRAHGGEVVLHGE--SFPDALAHALKLAEEE-GLTFVPPFDDPDVI-AGQGTVAMEIL 180 (521)
T ss_pred HHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCeeeCCCCChHHH-HHHHHHHHHHH
Confidence 99999999999999999999999999999999985 5799999999999886 78999999999997 59999999999
Q ss_pred HhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCcccc-----CC-----------------CCCCCchh
Q 019047 256 EDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVIS-----GE-----------------NAGYVPSI 313 (347)
Q Consensus 256 ~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~-----g~-----------------~~~~~p~~ 313 (347)
+|+++.+|+||+|+|+||+++|++.++|..+|+++||||||++++.+. |. .++..++.
T Consensus 181 eQ~~~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIGVep~~a~~~~~sl~~g~~~~~~~~~t~adGiav~~~g~~~~~ 260 (521)
T PRK12483 181 RQHPGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEPDDSNCLQAALAAGERVVLGQVGLFADGVAVAQIGEHTFE 260 (521)
T ss_pred HHhCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEEeCCCchhhHHHhcCCcccCCCCCceeceeccCCCCHHHHH
Confidence 999667999999999999999999999999999999999999875432 20 11233455
Q ss_pred ccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 314 LDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 314 l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
+.++.+|++++|+|+|+.+|++.|++++|++++|
T Consensus 261 ~~~~~vd~vv~Vse~ei~~ai~~l~~~~~i~vEp 294 (521)
T PRK12483 261 LCRHYVDEVVTVSTDELCAAIKDIYDDTRSITEP 294 (521)
T ss_pred HHHHhCCEEEEECHHHHHHHHHHHHHhCCcEEeH
Confidence 6678899999999999999999999999999987
|
|
| >PRK08638 threonine dehydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-50 Score=387.30 Aligned_cols=244 Identities=26% Similarity=0.401 Sum_probs=214.2
Q ss_pred hhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHH
Q 019047 95 AEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFV 174 (347)
Q Consensus 95 ~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~a 174 (347)
++++...+++|||+++++|++..|++||+|+|++|||||||||++.+++.++.+... ...|+++|+||||.|+|++
T Consensus 18 ~~~i~~~i~~TPlv~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~~~~~~~----~~~vv~~SsGN~g~alA~~ 93 (333)
T PRK08638 18 KQRLAGRIRKTPLPRSNYLSERCKGEIFLKLENMQRTGSFKIRGAFNKLSSLTDAEK----RKGVVACSAGNHAQGVALS 93 (333)
T ss_pred HHHhhCcCcCCCceechhhHHhhCCeEEEEeccCCccCCcHHHHHHHHHHhccHHhc----CCeEEEeCCcHHHHHHHHH
Confidence 466778899999999999998888999999999999999999999999998775332 2469999999999999999
Q ss_pred HHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHH
Q 019047 175 AAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEI 254 (347)
Q Consensus 175 a~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei 254 (347)
|+.+|++|+||||++.++.|+.+++.+||+|+.+++ +++++++.+.+++++. +.+|+++|+|+.++ .||+|+++||
T Consensus 94 aa~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~a~~~-g~~~~~~~~~~~~~-~g~~t~a~Ei 169 (333)
T PRK08638 94 CALLGIDGKVVMPKGAPKSKVAATCGYGAEVVLHGD--NFNDTIAKVEEIVEEE-GRTFIPPYDDPKVI-AGQGTIGLEI 169 (333)
T ss_pred HHHcCCCEEEEeCCCCcHHHHHHHHHcCCEEEEECc--CHHHHHHHHHHHHHhc-CCEEcCcCCCcchh-ccccHHHHHH
Confidence 999999999999999999999999999999999975 4688999999999886 78999999999887 6999999999
Q ss_pred HHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCcc-----ccCC-----CC-----C---CCch----
Q 019047 255 WEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSV-----ISGE-----NA-----G---YVPS---- 312 (347)
Q Consensus 255 ~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~-----~~g~-----~~-----~---~~p~---- 312 (347)
++|+ +++|+||+|+|+||+++|++.+||+.+++++||||||++++. ..|. .. + ..|.
T Consensus 170 ~~q~-~~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vigVep~g~~~~~~s~~~g~~~~~~~~~ti~~gl~~~~p~~~~~ 248 (333)
T PRK08638 170 LEDL-WDVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGVQSENVHGMAASFYAGEITTHRTTGTLADGCDVSRPGNLTY 248 (333)
T ss_pred Hhhc-CCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHCCCcccCCCCCCeeccccCCCccHHHH
Confidence 9999 579999999999999999999999999999999999998742 2221 00 0 1222
Q ss_pred hccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 313 ILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 313 ~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.+.++.+|+++.|+|+|+.+++++|++++|++++|
T Consensus 249 ~~~~~~~d~~v~Vsd~ea~~a~~~l~~~~gi~~e~ 283 (333)
T PRK08638 249 EIVRELVDDIVLVSEDEIRNAMKDLIQRNKVVTEG 283 (333)
T ss_pred HHHHHhCCeEEEECHHHHHHHHHHHHHHcCCeech
Confidence 22357899999999999999999999999999886
|
|
| >PRK06352 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-50 Score=390.27 Aligned_cols=257 Identities=22% Similarity=0.273 Sum_probs=221.3
Q ss_pred HHHHHhccCCCCchhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEE
Q 019047 81 IEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLV 160 (347)
Q Consensus 81 ~~~~~~~~~~~~~~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv 160 (347)
++.+|++++|+.+...++++++|+|||+++++|++.+|++||+|+|++|||||||||++.+++.+++++|. ++||
T Consensus 5 ~~~ry~~~lp~~~~~~~~~l~~G~TPL~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~a~~~g~-----~~vV 79 (351)
T PRK06352 5 LLEKYKEYLPVTDKTPMISLAEGNTPLIPLPNLSKELGVTLYGKYEGLNPTGSFKDRGMVMAVAKAKEEGA-----EAVI 79 (351)
T ss_pred hHHHHHHhCCCCCCcCccccCCCCCCeeEcHhhHHHhCCeEEEEecCCCCccChHHHHHHHHHHHHHHCCC-----CEEE
Confidence 45569999999876667899999999999999998888899999999999999999999999999999985 5699
Q ss_pred EeCCChhHHHHHHHHHHcCCcEEEEeCCC-CCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCC
Q 019047 161 EPTTGNTGLGIAFVAAVKGYKLIVTMPAS-TNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDN 239 (347)
Q Consensus 161 ~assGN~g~AlA~aa~~~Gl~~~I~vp~~-~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n 239 (347)
++|+||||+|+|++|+.+|++|+||||++ .+..|+.+|+.|||+|+.+++ +++++++.+.+++++. ++++.+ +.|
T Consensus 80 ~aSsGN~G~AlA~~aa~~G~~~~ivvp~~~~~~~k~~~~~a~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~-~~n 155 (351)
T PRK06352 80 CASTGNTSAAAAAYATRAGLKAYIVIPEGKVALGKLAQAVMYGADIISIQG--NFDEALKSVRELAETE-AVTLVN-SVN 155 (351)
T ss_pred EECCcHHHHHHHHHHHHcCCcEEEEEeCCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-Cccccc-CCC
Confidence 99999999999999999999999999997 589999999999999999986 4678889999988874 566666 458
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCC-----CeEEEEcCCCCccc-cCCC---C---
Q 019047 240 MANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKE-----IKVVGVEPAERSVI-SGEN---A--- 307 (347)
Q Consensus 240 ~~~~~~g~~ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~-----~~vigVep~~~~~~-~g~~---~--- 307 (347)
+.++ .||+|+++||++|++..||+||+|+|+||+++|++.+||+++++ ++||+|||++++.+ .|.. +
T Consensus 156 ~~~~-~G~~t~~~EI~~Q~~~~~D~vvv~vG~GG~~~Gi~~~lk~~~~~~~~~~~~vi~Vep~g~~~~~~g~~~~~~~~i 234 (351)
T PRK06352 156 PYRL-EGQKTAAFEICEQLGSAPDVLAIPVGNAGNISAYWKGFKEWNEAKASGLPRMHGFEAEGAAAIVQGKPIDNPETI 234 (351)
T ss_pred ccce-eeHHHHHHHHHHHcCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCCCCCEEEEEeeCCCCHHHhCCCcCCCCcc
Confidence 8887 59999999999999778999999999999999999999998766 89999999988633 2211 0
Q ss_pred ------C-CCchhccccccC----eEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 308 ------G-YVPSILDVQLLD----EVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 308 ------~-~~p~~l~~~~vd----~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
+ ...+.+..+.+| .++.|+|+|+++|+++|+++|||++||
T Consensus 235 a~~l~~~~~~~~~~~~~~~d~~~g~~~~V~d~e~~~a~r~la~~eGi~vep 285 (351)
T PRK06352 235 ATAIRIGNPASWGLAEAARDESGGYIHSVTDDEIVNAYKKIAAQDGVFIEP 285 (351)
T ss_pred eeEEEeCCCCcHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhhcCceEch
Confidence 0 011222223344 489999999999999999999999997
|
|
| >TIGR02991 ectoine_eutB ectoine utilization protein EutB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-49 Score=382.38 Aligned_cols=245 Identities=22% Similarity=0.292 Sum_probs=216.6
Q ss_pred hhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHH
Q 019047 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (347)
Q Consensus 94 ~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~ 173 (347)
.++++...+++|||+++++|++.+|.+||+|+|++|||||||+|++.+++..+.+... ...|+++|+||||.|+|+
T Consensus 9 a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~alA~ 84 (317)
T TIGR02991 9 AAARISGRVEETPLVESPSLSELCGVPVHLKLEHRQTTGSFKLRGATNAVLSLSDTQR----AAGVVAASTGNHGRALAY 84 (317)
T ss_pred HHHHHhCcCCCCCceechhhHHhhCCeEEEEeccCCCCCCcHHHHHHHHHHhhhHhcc----CCeEEEECCCHHHHHHHH
Confidence 4577888999999999999998888899999999999999999999999998764322 245899999999999999
Q ss_pred HHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHH
Q 019047 174 VAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPE 253 (347)
Q Consensus 174 aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~E 253 (347)
+|+.+|++|+||||+++++.|+++|+.|||+|+.++. +++++.+.+.+++++. +++|+++|+|+.++ .||+|+++|
T Consensus 85 ~a~~~G~~~~v~~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~~-~g~~t~a~E 160 (317)
T TIGR02991 85 AAAEEGVRATICMSELVPQNKVDEIRRLGAEVRIVGR--SQDDAQEEVERLVADR-GLTMLPPFDHPDIV-AGQGTLGLE 160 (317)
T ss_pred HHHHhCCCEEEEcCCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEeeCCCCChHHH-hhHHHHHHH
Confidence 9999999999999999999999999999999999996 4678888999998876 78999999999887 699999999
Q ss_pred HHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccc-----cCC------------------C-CCC
Q 019047 254 IWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVI-----SGE------------------N-AGY 309 (347)
Q Consensus 254 i~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~-----~g~------------------~-~~~ 309 (347)
|++|+ +.+|+||+|+|+||+++|++.+||+.+++++||||||++++.+ .|. . ++.
T Consensus 161 i~~q~-~~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vigvep~~~~~~~~s~~~g~~~~~~~~~tia~~l~~g~~~~~~ 239 (317)
T TIGR02991 161 VVEQM-PDLATVLVPLSGGGLASGVAMAVKAARPDTRVIGVSMERGAAMKASLQAGRPVLVAELPTLADSLGGGIGLDNR 239 (317)
T ss_pred HHHhC-CCCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEEEEECCchHHHHHHHcCCcccCCCCCChhhhhhhccCCCCH
Confidence 99998 4689999999999999999999999999999999999866433 221 0 122
Q ss_pred CchhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 310 VPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 310 ~p~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.++.+..+.+|+++.|+|+|+++++++|++++|++++|
T Consensus 240 ~~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~~g~~ve~ 277 (317)
T TIGR02991 240 VTFAMCKALLDEIVLVSEAEIAAGIRHAYAEEREIVEG 277 (317)
T ss_pred HHHHHHHHhCCeEEEECHHHHHHHHHHHHHhCCcEEcc
Confidence 34556678899999999999999999999999999987
|
Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases. |
| >TIGR02079 THD1 threonine dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-50 Score=398.14 Aligned_cols=246 Identities=24% Similarity=0.316 Sum_probs=215.2
Q ss_pred hhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHH
Q 019047 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (347)
Q Consensus 94 ~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~ 173 (347)
..+++...+++|||+++++|++.+|++||+|+|++|||||||+|+|.+++..+.+... .+.||++|+||||.++|+
T Consensus 6 a~~~i~~~i~~TPl~~~~~ls~~~g~~iy~K~E~~~ptGSfK~RgA~~~i~~l~~~~~----~~gvv~aSsGN~g~a~A~ 81 (409)
T TIGR02079 6 ARKRLKEVVPHTPLQLNERLSEKYGANIYLKREDLQPVRSYKIRGAYNFLKQLSDAQL----AKGVVCASAGNHAQGFAY 81 (409)
T ss_pred HHHHHhCcCCCCCccccHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhh----CCEEEEECccHHHHHHHH
Confidence 4577889999999999999999889999999999999999999999999987543322 245999999999999999
Q ss_pred HHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEE---EEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHH
Q 019047 174 VAAVKGYKLIVTMPASTNLERRILLRAFGAEI---ILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDST 250 (347)
Q Consensus 174 aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V---~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti 250 (347)
+|+.+|++|+||||++++..|+..++.|||+| +.++ .++++++++|.+++++. +++|+++|+|+.++ .||+|+
T Consensus 82 ~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~vv~v~~~g--~~~~~a~~~a~~~~~~~-g~~~~~~~~~~~~~-~g~~ti 157 (409)
T TIGR02079 82 ACRHLGVHGTVFMPATTPKQKIDRVKIFGGEFIEIILVG--DTFDQCAAAAREHVEDH-GGTFIPPFDDPRII-EGQGTV 157 (409)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHHcCCCeeEEEEeC--CCHHHHHHHHHHHHHhc-CCEEeCCCCCHhHh-hhhHHH
Confidence 99999999999999999999999999999974 3444 35789999999999886 78999999999887 599999
Q ss_pred HHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCcccc-----CCC-----------------CC
Q 019047 251 GPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVIS-----GEN-----------------AG 308 (347)
Q Consensus 251 ~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~-----g~~-----------------~~ 308 (347)
|+||++|+.+.||+||+|+|+||+++|++.++|+.+|+++||||||.+++.+. |.. ++
T Consensus 158 ~~Ei~~q~~~~~D~vv~pvG~GG~~~Gia~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~g~~v~~~g 237 (409)
T TIGR02079 158 AAEILDQLPEKPDYVVVPVGGGGLISGLTTYLAGTSPKTKIIGVEPEGAPSMKASLEAGEVVTLDKIDNFVDGAAVKRVG 237 (409)
T ss_pred HHHHHHhcCCCCCEEEEEecHhHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCceecCCCCCeeccccCCCCc
Confidence 99999999767999999999999999999999999999999999999875442 210 11
Q ss_pred CCchhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 309 YVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 309 ~~p~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
..++.+....+|++++|+|+|+.+|+++|++++||++||
T Consensus 238 ~~~~~~~~~~vd~vv~V~d~e~~~a~~~l~~~~gi~ve~ 276 (409)
T TIGR02079 238 DLNFKALKDVPDEVTLVPEGAVCTTILDLYNLEGIVAEP 276 (409)
T ss_pred HHHHHHHHHhCCcEEEECHHHHHHHHHHHHHhcCceecc
Confidence 123334567899999999999999999999999999997
|
This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway. |
| >PRK07048 serine/threonine dehydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-49 Score=383.72 Aligned_cols=256 Identities=20% Similarity=0.286 Sum_probs=221.4
Q ss_pred ccchhhHHHHHHHhccCCCCchhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCC
Q 019047 73 LYATSTREIEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDI 152 (347)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~ 152 (347)
+..++..++.+. ++++...+++|||+++++|++..|++||+|+|++|||||||+|++.+++.++.+.+.
T Consensus 3 ~~~~~~~~i~~a----------~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~- 71 (321)
T PRK07048 3 LLLPTYDDVAAA----------AARLAGVAHRTPVLTSRTADARTGAQVFFKCENFQRMGAFKFRGAYNALSQFSPEQR- 71 (321)
T ss_pred CccCCHHHHHHH----------HHHhhCCCCCCCCccchhhHHhcCCeEEEEeccCCCCCCeeHHHHHHHHHhhhHhhc-
Confidence 344455566664 356778889999999999998888999999999999999999999999998885432
Q ss_pred CCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCce
Q 019047 153 TPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAY 232 (347)
Q Consensus 153 ~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~ 232 (347)
...|+++|+||||+|+|++|+.+|++|+||||+++++.|+.+|+.|||+|+.+++. ++++.+.+.+++++. +++
T Consensus 72 ---~~~vv~aSsGN~g~alA~~a~~~G~~~~vvvp~~~~~~k~~~~~~~GAeV~~~~~~--~~~~~~~a~~l~~~~-g~~ 145 (321)
T PRK07048 72 ---RAGVVTFSSGNHAQAIALSARLLGIPATIVMPQDAPAAKVAATRGYGGEVVTYDRY--TEDREEIGRRLAEER-GLT 145 (321)
T ss_pred ---CCcEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHHhc-CCE
Confidence 24589999999999999999999999999999999999999999999999999853 567788888888886 789
Q ss_pred ecCCCCChHHHHHHHHHHHHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCc-----cccCCC-
Q 019047 233 MFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERS-----VISGEN- 306 (347)
Q Consensus 233 ~~~~~~n~~~~~~g~~ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~-----~~~g~~- 306 (347)
|+++|+|+.++ .||+|+++||++|++ +||+||+|+|+||+++|++.++|+.+++++||||||++++ +..|..
T Consensus 146 ~~~~~~~~~~~-~g~~t~~~EI~~q~~-~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~vigvep~~~~~~~~s~~~g~~~ 223 (321)
T PRK07048 146 LIPPYDHPHVI-AGQGTAAKELFEEVG-PLDALFVCLGGGGLLSGCALAARALSPGCKVYGVEPEAGNDGQQSFRSGEIV 223 (321)
T ss_pred EECCCCCcchh-hccchHHHHHHhhcC-CCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEeeCCChhHHHHHHcCCcc
Confidence 99999999886 699999999999994 7999999999999999999999999999999999999874 333311
Q ss_pred ----C------------CCCchhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 307 ----A------------GYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 307 ----~------------~~~p~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
+ +...+++.++.+|+++.|+|+|+++++++|++++||++||
T Consensus 224 ~~~~~~tia~g~~~~~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~ep 280 (321)
T PRK07048 224 HIDTPRTIADGAQTQHLGNYTFPIIRRLVDDIVTVSDAELVDAMRFFAERMKIVVEP 280 (321)
T ss_pred cCCCCCCcccccccCCccHHHHHHHHHhCCceEEECHHHHHHHHHHHHHhCCceecc
Confidence 0 1122344567899999999999999999999999999997
|
|
| >PRK07591 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-50 Score=396.60 Aligned_cols=259 Identities=21% Similarity=0.196 Sum_probs=225.3
Q ss_pred HHHHHHHhccCCCCchhhhhhhccCCCceeeccccccCCC-CeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCe
Q 019047 79 REIEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCV-GNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKT 157 (347)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~v~~~~~~TPLv~~~~l~~~~g-~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~ 157 (347)
..+|+ |+.++|+.+.. .+++++|+|||+++++|++.+| .+||+|+|++|||||||||++.+++.+|++.|. .
T Consensus 66 ~~~wr-y~~~lp~~~~~-~v~l~eG~TPLv~~~~l~~~lG~~~l~~K~E~~nPtGSfKdRga~~~v~~A~~~g~-----~ 138 (421)
T PRK07591 66 KSIWR-YRDLLPVPADN-PVDLGPGFTPLVKADRLARELGLKNLYIKDDSVNPTHSFKDRVVSVALTAARELGF-----T 138 (421)
T ss_pred cchhc-chhhCccccCC-CCcCCCCCCcceEhHHHHHHhCCCcEEEEeCCCCCccChHHHHHHHHHHHHHHcCC-----C
Confidence 46777 89999986533 6999999999999999999888 499999999999999999999999999999986 4
Q ss_pred EEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCC
Q 019047 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQF 237 (347)
Q Consensus 158 ~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~ 237 (347)
.|+++|+||||+|+|++|+.+|++|+||||++++..|+.+|+.|||+|+.++++ ++++.+.+.+++++.+++++++++
T Consensus 139 ~vv~aSsGN~g~alA~~aa~~Gl~~~I~vP~~~~~~k~~~~~~~GA~Vi~v~g~--~d~a~~~a~~~~~~~~~~~~~n~~ 216 (421)
T PRK07591 139 TVACASTGNLANSVAAHAARAGLDSCVFIPADLEAGKIVGTLVYGPTLVAVDGN--YDDVNRLCSELANEHEGWGFVNIN 216 (421)
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhcCCEEEecCC
Confidence 689999999999999999999999999999999999999999999999999964 688999999999887678889988
Q ss_pred CChHHHHHHHHHHHHHHHHhhCCC-CCEEEEecCcchHHHHHHHHHHhc-------CCCCeEEEEcCCCCcccc-----C
Q 019047 238 DNMANLKIHFDSTGPEIWEDTLGC-VDIFVAAIGTGGTITGTGRFLKMM-------NKEIKVVGVEPAERSVIS-----G 304 (347)
Q Consensus 238 ~n~~~~~~g~~ti~~Ei~~ql~~~-~D~vv~pvG~Gg~~~Gi~~~~k~~-------~~~~~vigVep~~~~~~~-----g 304 (347)
.|++.+ .|++|+++||++|++++ ||+||+|+|+||+++|++.+|+++ .+++|||+|||++++.+. |
T Consensus 217 ~~p~~i-eG~~Tia~Ei~eQl~~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~Vq~~g~~~~~~~~~~g 295 (421)
T PRK07591 217 LRPYYA-EGSKTLGYEVAEQLGWRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVFGAQAEGCSPIAQAFKEG 295 (421)
T ss_pred CCcccc-cchHHHHHHHHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEEEEecCCCCHHHHHHHcC
Confidence 888887 59999999999999754 999999999999999999999997 578999999999864332 2
Q ss_pred CC------CCCC--------c------hhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 305 EN------AGYV--------P------SILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 305 ~~------~~~~--------p------~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.. +..+ | +.+.++..+.++.|+|+|+++|++.|++.|||+++|
T Consensus 296 ~~~~~~~~~~tia~~l~~~~p~~~~~~~~~i~~~~g~~v~Vsd~ei~~a~~~la~~eGi~~ep 358 (421)
T PRK07591 296 RDVVKPVKPNTIAKSLAIGNPADGPYALDIARRTGGAIEDVTDEEIIEGIKLLARTEGIFTET 358 (421)
T ss_pred CCcccCCCCCchhhheecCCCCCcHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhcCCeeecc
Confidence 10 1110 1 122345566899999999999999999999999987
|
|
| >TIGR01137 cysta_beta cystathionine beta-synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-49 Score=396.52 Aligned_cols=251 Identities=44% Similarity=0.715 Sum_probs=220.3
Q ss_pred hhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHH
Q 019047 96 EDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVA 175 (347)
Q Consensus 96 ~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa 175 (347)
+.+...+++|||+++++|++.+|++||+|+|++|||||||+|+|.+++.++.++|.+.+|+ .|+++|+||||+|+|++|
T Consensus 3 ~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~-~vv~~ssGN~g~alA~~a 81 (454)
T TIGR01137 3 DNIIDLIGNTPLVRLNKVSKGIKCELLAKCEFFNPGGSVKDRIALRMIEDAEASGRLKPGD-TIIEPTSGNTGIGLALVA 81 (454)
T ss_pred cchHHhcCCCceEEccccCCCCCceEEEEEhhcCCCcchHHHHHHHHHHHHHHcCCCCCCC-EEEEeCCcHHHHHHHHHH
Confidence 3466778999999999999988889999999999999999999999999999999988874 589999999999999999
Q ss_pred HHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChH---HHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHH
Q 019047 176 AVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLR---GALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGP 252 (347)
Q Consensus 176 ~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~---~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~ 252 (347)
+.+|++|+||||+++++.|+.+++.+||+|+.+++...++ ..++.+.+++++.++.+|+++|+|+.++..||.|+|+
T Consensus 82 ~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 161 (454)
T TIGR01137 82 AIKGYKCIIVLPEKMSNEKVDVLKALGAEIVRTPTAAAFDSPESHIGVAKRLVREIPGAHILDQYNNPSNPLAHYDGTGP 161 (454)
T ss_pred HHcCCeEEEEeCCCcCHHHHHHHHHCCCEEEEcCCccCCCchHHHHHHHHHHHHhCCCcEecccCCChhhHHHHHHhhHH
Confidence 9999999999999999999999999999999998642222 3366777787775577888999999987679999999
Q ss_pred HHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccccC---------------CCCCCCchhcccc
Q 019047 253 EIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG---------------ENAGYVPSILDVQ 317 (347)
Q Consensus 253 Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~g---------------~~~~~~p~~l~~~ 317 (347)
||++|+++.||+||+|+|+||+++|++.++|+..++++||||||.++....+ ...+..|+.+...
T Consensus 162 Ei~~q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~ve~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 241 (454)
T TIGR01137 162 EILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGADPEGSILAQPENLNKTGRTPYKVEGIGYDFIPTVLDRK 241 (454)
T ss_pred HHHHHhCCCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEEEecCCCcccCCCcccCCCCCCccCCCCCCCCCCCcCCch
Confidence 9999997789999999999999999999999999999999999988754322 1112345555667
Q ss_pred ccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 318 LLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 318 ~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.+|+++.|+|+|++++++.|+++|||++||
T Consensus 242 ~~d~~~~V~~~e~~~a~~~l~~~~gi~~~~ 271 (454)
T TIGR01137 242 VVDEWIKTDDKESFKMARRLIKEEGLLVGG 271 (454)
T ss_pred hCCeEEEECHHHHHHHHHHHHHHhCccCcH
Confidence 899999999999999999999999999997
|
Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven. |
| >cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-49 Score=381.65 Aligned_cols=240 Identities=25% Similarity=0.244 Sum_probs=210.0
Q ss_pred CCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEE
Q 019047 104 RTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLI 183 (347)
Q Consensus 104 ~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~ 183 (347)
+|||+++++|++.+|++||+|+|++|||||||||++.+++.+++++|. .++ +.|+++|+||||.|+|++|+.+|++|+
T Consensus 1 ~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-~~~-~~vv~aSsGN~g~alA~~a~~~G~~~~ 78 (316)
T cd06448 1 KTPLIESTALSKTAGCNVFLKLENLQPSGSFKIRGIGHLCQKSAKQGL-NEC-VHVVCSSGGNAGLAAAYAARKLGVPCT 78 (316)
T ss_pred CCCccccchhhHhhCCeEEEEeccCCCcCChHHHHHHHHHHHHHHhhc-ccC-CeEEEeCCcHHHHHHHHHHHHcCCCEE
Confidence 599999999998888999999999999999999999999999999885 222 459999999999999999999999999
Q ss_pred EEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHHHHhhCC--C
Q 019047 184 VTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLG--C 261 (347)
Q Consensus 184 I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei~~ql~~--~ 261 (347)
||||.++++.|+++|+.|||+|+.++++. ++++.+.+.+++++.++++|+++|+|+.++ .||.|+++||++|+++ .
T Consensus 79 iv~p~~~~~~k~~~l~~~GA~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~n~~~~-~g~~t~~~Ei~~q~~~~~~ 156 (316)
T cd06448 79 IVVPESTKPRVVEKLRDEGATVVVHGKVW-WEADNYLREELAENDPGPVYVHPFDDPLIW-EGHSSMVDEIAQQLQSQEK 156 (316)
T ss_pred EEECCCCCHHHHHHHHHcCCEEEEECCch-HHHHHHHHHHHHhccCCcEEeCCCCCchhh-ccccHHHHHHHHHccccCC
Confidence 99999999999999999999999998642 566777787888775589999999999887 5899999999999976 6
Q ss_pred CCEEEEecCcchHHHHHHHHHHhcC-CCCeEEEEcCCCCccccC-------------------CCCCCCc---hhccccc
Q 019047 262 VDIFVAAIGTGGTITGTGRFLKMMN-KEIKVVGVEPAERSVISG-------------------ENAGYVP---SILDVQL 318 (347)
Q Consensus 262 ~D~vv~pvG~Gg~~~Gi~~~~k~~~-~~~~vigVep~~~~~~~g-------------------~~~~~~p---~~l~~~~ 318 (347)
||+||+|+|+||+++|++.+||+.+ ++++||+|||.+++.+.+ ......+ +...++.
T Consensus 157 ~D~vv~~vG~Gg~~~Gv~~~~k~~~~~~~~ii~Vep~g~~~~~~~~~~g~~~~~~~~~t~a~glg~~~~~~~~~~~~~~~ 236 (316)
T cd06448 157 VDAIVCSVGGGGLLNGIVQGLERNGWGDIPVVAVETEGAHSLNASLKAGKLVTLPKITSVATSLGAKTVSSQALEYAQEH 236 (316)
T ss_pred CCEEEEEeCchHHHHHHHHHHHhcCCCCCEEEEEeeCCChHHHHHHHcCCcEecCCCCchhhccCCCCcCHHHHHHHHhc
Confidence 9999999999999999999999996 999999999999854422 1111222 2334566
Q ss_pred cCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 319 LDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 319 vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
+|+++.|+|+|+++++++|+++|||++||
T Consensus 237 ~~~~v~Vsd~e~~~a~~~l~~~~gi~~~~ 265 (316)
T cd06448 237 NIKSEVVSDRDAVQACLRFADDERILVEP 265 (316)
T ss_pred CCeEEEECHHHHHHHHHHHHHHcCceech
Confidence 89999999999999999999999999997
|
|
| >PRK06110 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-49 Score=382.48 Aligned_cols=245 Identities=22% Similarity=0.278 Sum_probs=214.9
Q ss_pred hhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHH
Q 019047 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (347)
Q Consensus 94 ~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~ 173 (347)
.+.++...+++|||+++++|++.+|.+||+|+|++||+||||+|++.+++..+++++... ..|+++|+||||+|+|+
T Consensus 11 a~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~l~~a~~~~~~~---~~vv~aSsGN~g~alA~ 87 (322)
T PRK06110 11 AAAVVYAAMPPTPQYRWPLLAERLGCEVWVKHENHTPTGAFKVRGGLVYFDRLARRGPRV---RGVISATRGNHGQSVAF 87 (322)
T ss_pred HHHHHhCcCcCCCcccchhHHHHhCCeEEEEeccCCCcCCcHHHHHHHHHHHhhhhcCCC---ceEEEECCCHHHHHHHH
Confidence 346778899999999999999888899999999999999999999999999998876532 34899999999999999
Q ss_pred HHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHH
Q 019047 174 VAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPE 253 (347)
Q Consensus 174 aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~E 253 (347)
+|+.+|++|+||||++.++.|+++|+.+||+|+.+++ +++++++++.++++++ +++|+++| ++..+ .||.|+++|
T Consensus 88 ~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~-~~~~~-~G~~t~~~E 162 (322)
T PRK06110 88 AARRHGLAATIVVPHGNSVEKNAAMRALGAELIEHGE--DFQAAREEAARLAAER-GLHMVPSF-HPDLV-RGVATYALE 162 (322)
T ss_pred HHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEcCCC-CChHH-hccchHHHH
Confidence 9999999999999999999999999999999999974 5788999999998886 78999998 56665 599999999
Q ss_pred HHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccc-----cCC----------CCCC---C--c--
Q 019047 254 IWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVI-----SGE----------NAGY---V--P-- 311 (347)
Q Consensus 254 i~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~-----~g~----------~~~~---~--p-- 311 (347)
|++|++ .+|+||+|+|+||+++|++.++|+.+++++||+|||.+++.+ .|. ..+. . +
T Consensus 163 i~~q~~-~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi~Vep~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~~ 241 (322)
T PRK06110 163 LFRAVP-DLDVVYVPIGMGSGICGAIAARDALGLKTRIVGVVSAHAPAYALSFEAGRVVTTPVATTLADGMACRTPDPEA 241 (322)
T ss_pred HHhhCC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEeeCCChHHHHHHHcCCcccCCCCCCcccccCCCCccHHH
Confidence 999984 789999999999999999999999999999999999987543 221 0111 1 1
Q ss_pred hhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 312 SILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 312 ~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
+.+.++.+|+++.|+|+|+++++++|++++||++||
T Consensus 242 ~~~~~~~~d~~~~Vsd~e~~~a~~~l~~~~gi~~e~ 277 (322)
T PRK06110 242 LEVIRAGADRIVRVTDDEVAAAMRAYFTDTHNVAEG 277 (322)
T ss_pred HHHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEEeh
Confidence 233457899999999999999999999999999986
|
|
| >PRK08639 threonine dehydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-50 Score=397.59 Aligned_cols=247 Identities=24% Similarity=0.333 Sum_probs=214.3
Q ss_pred hhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHH
Q 019047 95 AEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFV 174 (347)
Q Consensus 95 ~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~a 174 (347)
.+++...+++|||+++++|++.+|++||+|+|++|||||||+|+|.+++..+.+... .+.|+++|+||||.++|++
T Consensus 16 ~~~i~~~i~~TPl~~~~~ls~~~g~~l~~K~E~~~ptGSfK~RgA~~~i~~l~~~~~----~~~Vv~aSsGN~g~alA~~ 91 (420)
T PRK08639 16 AKRLKDVVPETPLQRNDYLSEKYGANVYLKREDLQPVRSYKLRGAYNAISQLSDEEL----AAGVVCASAGNHAQGVAYA 91 (420)
T ss_pred HHHHhCcCcCCCccchHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhh----CCEEEEECccHHHHHHHHH
Confidence 466788899999999999998888999999999999999999999999988543221 2569999999999999999
Q ss_pred HHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEEC-CCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHH
Q 019047 175 AAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD-PEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPE 253 (347)
Q Consensus 175 a~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~-~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~E 253 (347)
|+.+|++|+||||++++..|+..++.|||+|+.+. ...+++++++.|.+++++. |++|+++|+|+.++ .||+|+|+|
T Consensus 92 a~~~G~~~~IvmP~~~~~~k~~~~r~~GA~vv~v~~~g~~~~~a~~~a~~~a~~~-g~~~~~~~~~~~~~-~G~~tig~E 169 (420)
T PRK08639 92 CRHLGIPGVIFMPVTTPQQKIDQVRFFGGEFVEIVLVGDTFDDSAAAAQEYAEET-GATFIPPFDDPDVI-AGQGTVAVE 169 (420)
T ss_pred HHHcCCCEEEEECCCChHHHHHHHHHcCCCeeEEEEeCcCHHHHHHHHHHHHHhc-CCcccCCCCChhHh-cchhHHHHH
Confidence 99999999999999999999999999999753221 1235789999999999886 79999999999887 699999999
Q ss_pred HHHhhCCC--CCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCcccc-----CC-----------------CCCC
Q 019047 254 IWEDTLGC--VDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVIS-----GE-----------------NAGY 309 (347)
Q Consensus 254 i~~ql~~~--~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~-----g~-----------------~~~~ 309 (347)
|++|+.+. ||+||+|+|+||+++|++.++|+.+|+++||||||.+++.+. |. .++.
T Consensus 170 I~eq~~~~~~~D~vv~~vG~GG~~aGva~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~gi~v~~~g~ 249 (420)
T PRK08639 170 ILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGVEPAGAASMKAALEAGKPVTLEKIDKFVDGAAVARVGD 249 (420)
T ss_pred HHHhccccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCCCcHHHHHhCCCceeCCCCCCeecccccCCccH
Confidence 99999655 999999999999999999999999999999999999875432 21 1112
Q ss_pred CchhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 310 VPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 310 ~p~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.++.+.++.+|++++|+|+|+.+|+++|++++||++||
T Consensus 250 ~~~~~~~~~vd~~v~V~d~ei~~a~~~l~~~~gi~~e~ 287 (420)
T PRK08639 250 LTFEILKDVVDDVVLVPEGAVCTTILELYNKEGIVAEP 287 (420)
T ss_pred HHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCceecc
Confidence 23445578899999999999999999999999999987
|
|
| >PRK02991 D-serine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-49 Score=391.70 Aligned_cols=263 Identities=21% Similarity=0.249 Sum_probs=222.9
Q ss_pred HHHHhccCCCCchhhhhhhccCCCceeeccccccCCC--------CeEEEEeCCCCC-CCchhHHHHHHHHHH-----HH
Q 019047 82 EKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCV--------GNVAAKLESMEP-CRSVKDRIGYSMITD-----AE 147 (347)
Q Consensus 82 ~~~~~~~~~~~~~~~~v~~~~~~TPLv~~~~l~~~~g--------~~Iy~K~E~~~p-tGSfK~Rga~~~~~~-----a~ 147 (347)
++.|..++|......+.+.++++|||++++.|++.+| .+||+|+|++|| |||||+||+.+++.. ++
T Consensus 53 i~~~~~~~~~~~~~~~~~~~~~~TPL~~~~~l~~~~g~~~~~~~~~~V~lK~E~~np~tGSFK~RGA~~~i~~l~~~~a~ 132 (441)
T PRK02991 53 LKRFAPYLAKAFPETAATGGIIESPLVAIPAMQKALEKEYGQPISGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLAL 132 (441)
T ss_pred HHhhhhhhhhhCccccccCCccCCCceehHHHHHHhcccccCCcCceEEEEEcCCCCCcCChHHHHHHHHHHHhhHHHHH
Confidence 3444445555544456678899999999999987665 699999999999 999999999999875 56
Q ss_pred HcCCCCCCC----------------eEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCC
Q 019047 148 ESGDITPGK----------------TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPE 211 (347)
Q Consensus 148 ~~G~~~~g~----------------~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~ 211 (347)
+.|.+.++. +.||++|+||||.|+|++|+.+|++|+||||+++++.|+++|+.|||+|+.+++
T Consensus 133 ~~G~~~~~~~~~~l~~~~~~~~~~~~~VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~a~~~K~~~ir~~GAeVi~~~~- 211 (441)
T PRK02991 133 EAGLLTLDDDYSKLASPEFRQFFSQYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARQWKKDKLRSHGVTVVEYEG- 211 (441)
T ss_pred HhCCCCcCcchhhhcchhhhhhccCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC-
Confidence 788776653 469999999999999999999999999999999999999999999999999986
Q ss_pred CChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHHHHhhCC--------CCCEEEEecCcchHHHHHHHHHH
Q 019047 212 KGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLG--------CVDIFVAAIGTGGTITGTGRFLK 283 (347)
Q Consensus 212 ~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei~~ql~~--------~~D~vv~pvG~Gg~~~Gi~~~~k 283 (347)
+++++.+.|.++++++++++|+++++++..+ .||+|+|+||++|+++ .||+||+|+|+||+++|++.++|
T Consensus 212 -~~~~a~~~A~~la~~~~~~~~~~~~~~~~~i-aG~~Tig~EI~eQl~~~~~~vD~~~Pd~VvvpvGgGGliaGia~~lk 289 (441)
T PRK02991 212 -DYGVAVEEGRKAAESDPNCYFIDDENSRTLF-LGYAVAGLRLKAQLAEQGIVVDADHPLFVYLPCGVGGGPGGVAFGLK 289 (441)
T ss_pred -CHHHHHHHHHHHHHhcCCeEeCCCCCchhHH-HhHHHHHHHHHHHhhhccCccccCCCCEEEEEeCccHHHHHHHHHHH
Confidence 4689999999999887678999998777665 6999999999999952 36799999999999999999999
Q ss_pred hc-CCCCeEEEEcCCCCccc-----cCCC-----------------------CCCCchhccccccCeEEEeCHHHHHHHH
Q 019047 284 MM-NKEIKVVGVEPAERSVI-----SGEN-----------------------AGYVPSILDVQLLDEVIKVTNDEAVNMA 334 (347)
Q Consensus 284 ~~-~~~~~vigVep~~~~~~-----~g~~-----------------------~~~~p~~l~~~~vd~~v~Vsd~ea~~a~ 334 (347)
+. .++++||+|||.+++.+ .|.. ++..+|.+.++.+|+++.|+|+|+.+++
T Consensus 290 ~~~~~~~kVigVEp~ga~~~~~s~~~G~~~~~~~~~~g~~~~Tiadgl~~~~~~~~~~~~~~~~vd~~v~VsD~ei~~a~ 369 (441)
T PRK02991 290 LAFGDHVHCFFAEPTHSPCMLLGLMTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAMERLLDGVYTVSDETLYRLL 369 (441)
T ss_pred HhcCCCCEEEEEecCCChHHHHHHhcCCCcceeccccCCCCcchhhhhcCCCcchhHHHHHHHhCCeEEEECHHHHHHHH
Confidence 97 68899999999987422 2210 1223345566889999999999999999
Q ss_pred HHHHHhcCccccC
Q 019047 335 RRLALEEGLLVMC 347 (347)
Q Consensus 335 ~~La~~eGI~~G~ 347 (347)
++|++++||++||
T Consensus 370 ~~L~~~~gi~vEp 382 (441)
T PRK02991 370 GLLADTEGIRLEP 382 (441)
T ss_pred HHHHHhcCceeeH
Confidence 9999999999987
|
|
| >PRK06721 threonine synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-49 Score=382.25 Aligned_cols=258 Identities=23% Similarity=0.258 Sum_probs=221.3
Q ss_pred HHHHHHhccCCCCchhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEE
Q 019047 80 EIEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVL 159 (347)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~v 159 (347)
.++.+|.+++|+.+...++++.+++|||+++++|++.+|++||+|+|++|||||||||+|.+++.+++++|. .+|
T Consensus 4 ~~~~ry~~~lp~~~~~~~~~l~~G~TPl~~l~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~a~~~g~-----~~v 78 (352)
T PRK06721 4 GLLNQYASYLPVNENTPDVSLMEGNTPLIPLLNISKQLGIQLYGKYEGANPTGSFKDRGMVMAVAKAKEEGS-----EAI 78 (352)
T ss_pred chHHHHHHhCCCCCCCCccccCcCCCCeeEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCCC-----CEE
Confidence 456779999999888888999999999999999998888899999999999999999999999999999985 569
Q ss_pred EEeCCChhHHHHHHHHHHcCCcEEEEeCCC-CCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCC
Q 019047 160 VEPTTGNTGLGIAFVAAVKGYKLIVTMPAS-TNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFD 238 (347)
Q Consensus 160 v~assGN~g~AlA~aa~~~Gl~~~I~vp~~-~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~ 238 (347)
|++|+||||+|+|++|+.+|++|+||||++ .+..|+++|+.+||+|+.+++ +++++.+.+.+++++. +.++.+ +.
T Consensus 79 V~aSsGN~G~alA~~aa~~G~~~~vvvp~~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~-~~ 154 (352)
T PRK06721 79 ICASTGNTSASAAAYAARLGMKCIIVIPEGKIAHGKLAQAVAYGAEIISIEG--NFDDALKAVRNIAAEE-PITLVN-SV 154 (352)
T ss_pred EEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhC-Cceecc-CC
Confidence 999999999999999999999999999987 478999999999999999985 4688889999998886 566665 56
Q ss_pred ChHHHHHHHHHHHHHHHHhhCCCCCEEEEecCcchHHHHH----HHHHHhcC-CCCeEEEEcCCCCccccCCC-------
Q 019047 239 NMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGT----GRFLKMMN-KEIKVVGVEPAERSVISGEN------- 306 (347)
Q Consensus 239 n~~~~~~g~~ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi----~~~~k~~~-~~~~vigVep~~~~~~~g~~------- 306 (347)
|+.++ .||.|+++||++|+++.||+||+|+|+||+++|+ ..++|+.+ ++++||+|||++++.+.++.
T Consensus 155 n~~~~-~G~~t~~~Ei~eq~~~~~D~ivv~vG~GG~l~G~~~G~~~~lk~~~~~~~~vigVep~~~~~~~~g~~~~~~~t 233 (352)
T PRK06721 155 NPYRI-EGQKTAAFEICDQLQRAPDVLAIPVGNAGNITAYWKGFCEYEKEKGYKKPRIHGFEAEGAAAIVKGHVIDEPET 233 (352)
T ss_pred Cchhh-hhhhhHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCeEEEEecCCCChHhhCCcCCCCCc
Confidence 88887 5999999999999976899999999999999985 45566664 88999999999875442211
Q ss_pred ------CCCC---ch--hccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 307 ------AGYV---PS--ILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 307 ------~~~~---p~--~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.+.. .. ......+|+++.|+|+|+++++++|+++|||++||
T Consensus 234 ia~~l~~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~la~~eGi~vep 285 (352)
T PRK06721 234 IATAIRIGNPASWSYAVEAAEQSHGEIDMVSDEEILHAYRLLAKSEGVFAEP 285 (352)
T ss_pred eeeccccCCCCCHHHHHHHHHhcCCEEEEECHHHHHHHHHHHHHhcCcccCc
Confidence 1110 01 11234688999999999999999999999999997
|
|
| >TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-49 Score=390.40 Aligned_cols=248 Identities=21% Similarity=0.264 Sum_probs=214.3
Q ss_pred hhhhccCCCceeeccccccCC--------CCeEEEEeCCCCC-CCchhHHHHHHHHHH-----HHHcCCCCCCC------
Q 019047 97 DVTQLIGRTPMVYLNKVTEGC--------VGNVAAKLESMEP-CRSVKDRIGYSMITD-----AEESGDITPGK------ 156 (347)
Q Consensus 97 ~v~~~~~~TPLv~~~~l~~~~--------g~~Iy~K~E~~~p-tGSfK~Rga~~~~~~-----a~~~G~~~~g~------ 156 (347)
.-+.++++|||++++++++.+ +++||+|+|++|| |||||+|+|.+++.. +++.|.++++.
T Consensus 63 ~~~~~~~~TPL~~~~~ls~~~~~~~~~~~~~~v~lKlE~~nP~tGSfKdRGA~~~i~~~~~~~A~~~G~l~~~~~~~~l~ 142 (431)
T TIGR02035 63 AATGGIIESPLVEIFNMQKELEKKYQQEIPGRLLLKMDSHLPISGSIKARGGIYEVLKHAEELALEAGLLKLDDDYSILA 142 (431)
T ss_pred cccCCccCCCccchHHHHHHhhhcccCCcCceEEEEecccCCccCCcHHHHHHHHHHHhhHHHHHHcCCCCcCcchhhhc
Confidence 345699999999999998743 5799999999999 999999999999875 77889877764
Q ss_pred ----------eEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHH
Q 019047 157 ----------TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVL 226 (347)
Q Consensus 157 ----------~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~ 226 (347)
+.|+++|+||||.|||++|+.+|++|+||||+++++.|+++|+.|||+|+.+++ ++++++++|+++++
T Consensus 143 e~~~~~~~~~~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~~~K~~~ir~~GAeVv~~~~--~~~~a~~~A~~la~ 220 (431)
T TIGR02035 143 EKKFKDFFSRYSIAVGSTGNLGLSIGIISAALGFQVTVHMSADAKQWKKDKLRSKGVTVVEYES--DYGVAVEEGRKNAD 220 (431)
T ss_pred chhhhhcccCceEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999999999999999999986 46899999999999
Q ss_pred cCCCceecCCCCChHHHHHHHHHHHHHHHHhhCC--------CCCEEEEecCcchHHHHHHHHHHhc-CCCCeEEEEcCC
Q 019047 227 NTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLG--------CVDIFVAAIGTGGTITGTGRFLKMM-NKEIKVVGVEPA 297 (347)
Q Consensus 227 ~~~~~~~~~~~~n~~~~~~g~~ti~~Ei~~ql~~--------~~D~vv~pvG~Gg~~~Gi~~~~k~~-~~~~~vigVep~ 297 (347)
++++.+++++ .|+.++..||+|+|+||++|+++ .||+|++|+|+||+++|++.++|+. +++++||+|||.
T Consensus 221 ~~~~~~~~d~-~n~~n~~aG~~T~g~EI~eQl~~~~~~~d~~~pd~V~vp~G~GGli~Gia~~lK~~~~~~vkvi~VEp~ 299 (431)
T TIGR02035 221 ADPMCYFVDD-ENSRNLFLGYAVAASRLKKQFDKKGIVVDKEHPLFVYLPCGVGGGPGGVAFGLKLAFGDNVHCFFAEPT 299 (431)
T ss_pred hcCCeEECCC-CCcccHHhhHHHHHHHHHHhhhccccccccCCCCEEEEEeCcCHHHHHHHHHHHHhcCCCCEEEEEeeC
Confidence 8777888887 45556668999999999999953 5779999999999999999999997 789999999999
Q ss_pred CCccc-----cCCC-----------------------CCCCchhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 298 ERSVI-----SGEN-----------------------AGYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 298 ~~~~~-----~g~~-----------------------~~~~p~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
+++.+ .|.. ++...+.+.++.+|++++|+|+|+++++++|++++||++||
T Consensus 300 ~s~~~~~s~~~g~~~~~~~~~~g~~~~T~AdGlav~~p~~~~~~~~~~~vd~vv~VsD~ei~~a~~~L~~~egi~vEp 377 (431)
T TIGR02035 300 HSPCMLLGVYTGLHEKISVQDIGIDNITAADGLAVGRPSGFVGRLMEPLLSGIYTVDDYTLYDLLRILAESEGKRLEP 377 (431)
T ss_pred CCHHHHHHHhcCCCccccccccCCCCCceeccccCCCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCCeEcH
Confidence 87532 2210 11222334456899999999999999999999999999987
|
This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine. |
| >PRK08197 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-49 Score=391.47 Aligned_cols=259 Identities=24% Similarity=0.223 Sum_probs=225.0
Q ss_pred HHHHHHHhccCCCCchhhhhhhccCCCceeeccccccCCC-CeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCe
Q 019047 79 REIEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCV-GNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKT 157 (347)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~v~~~~~~TPLv~~~~l~~~~g-~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~ 157 (347)
..+|+ |++++|+......+++++|+|||+++++|++.+| .+||+|+|++|||||||||++.+++.+|++.|. .
T Consensus 55 ~~~~r-y~~~lp~~~~~~~vslgeG~TPL~~~~~l~~~~G~~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~-----~ 128 (394)
T PRK08197 55 ANLWR-YHELLPVRDPEHIVSLGEGMTPLLPLPRLGKALGIGRLWVKDEGLNPTGSFKARGLAVGVSRAKELGV-----K 128 (394)
T ss_pred cchhc-chhhCCCCCCCCCCccCcCCCCceEhHHHHHHhCCCcEEEEeCCCCCCcCcHHhHHHHHHHHHHHcCC-----C
Confidence 35675 9999999765556999999999999999998888 499999999999999999999999999999985 5
Q ss_pred EEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCC
Q 019047 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQF 237 (347)
Q Consensus 158 ~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~ 237 (347)
.|+++|+||||.|+|++|+.+|++|+||||+++++.|+.+|+.+||+|+.++++ ++++.+.+.+.+++. ++++++++
T Consensus 129 ~vv~aSsGN~g~alA~~aa~~G~~~~v~vp~~~~~~k~~~~~~~GA~Vi~v~~~--~~~~~~~a~~~~~~~-g~~~~~~~ 205 (394)
T PRK08197 129 HLAMPTNGNAGAAWAAYAARAGIRATIFMPADAPEITRLECALAGAELYLVDGL--ISDAGKIVAEAVAEY-GWFDVSTL 205 (394)
T ss_pred EEEEeCCcHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhc-CcccccCC
Confidence 699999999999999999999999999999999999999999999999999864 678888888888875 78999999
Q ss_pred CChHHHHHHHHHHHHHHHHhhCC-CCCEEEEecCcchHHHHHHHHHHhc-------CCCCeEEEEcCCCCccc-----cC
Q 019047 238 DNMANLKIHFDSTGPEIWEDTLG-CVDIFVAAIGTGGTITGTGRFLKMM-------NKEIKVVGVEPAERSVI-----SG 304 (347)
Q Consensus 238 ~n~~~~~~g~~ti~~Ei~~ql~~-~~D~vv~pvG~Gg~~~Gi~~~~k~~-------~~~~~vigVep~~~~~~-----~g 304 (347)
.|++++ .|++|+++||++|+++ .||+||+|+|+|++++|++.+|+++ .+.++||+|||++++.+ .|
T Consensus 206 ~np~~i-eG~~t~a~Ei~eQl~~~~pD~vvvpvG~Gg~~~Gi~~~~k~~~~~g~~~~~~p~ii~Vq~~g~~~l~~~~~~g 284 (394)
T PRK08197 206 KEPYRI-EGKKTMGLELAEQLGWRLPDVILYPTGGGVGLIGIWKAFDELEALGWIGGKRPRLVAVQAEGCAPIVKAWEEG 284 (394)
T ss_pred CCccch-hcHHHHHHHHHHHcCCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCcCCCCCeEEEEEeCCCCHHHHHHHcC
Confidence 999997 5999999999999975 5999999999999999999999986 37899999999987443 22
Q ss_pred CC-------CCC------Cchh--------ccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 305 EN-------AGY------VPSI--------LDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 305 ~~-------~~~------~p~~--------l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.. +.. ++.+ ..++..+.++.|+|+|+++|+++|+++|||++||
T Consensus 285 ~~~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~~~g~~v~V~d~e~~~a~~~la~~eGi~vep 348 (394)
T PRK08197 285 KEESEFWEDAHTVAFGIRVPKALGDFLVLDAVRETGGCAIAVSDDAILAAQRELAREEGLFACP 348 (394)
T ss_pred CCccccCCCCCceehhhhCCCCCCHHHHHHHHHHhCCEEEEeCHHHHHHHHHHHHhcCCceECc
Confidence 10 000 1111 1124556789999999999999999999999987
|
|
| >TIGR01127 ilvA_1Cterm threonine dehydratase, medium form | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-49 Score=388.98 Aligned_cols=234 Identities=26% Similarity=0.372 Sum_probs=212.0
Q ss_pred CceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEE
Q 019047 105 TPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIV 184 (347)
Q Consensus 105 TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I 184 (347)
|||+++++|++.+|++||+|+|++|||||||+|+|.+++..+.++++ .+.|+++|+||||+|+|++|+.+|++|+|
T Consensus 1 TPl~~~~~ls~~~g~~i~~K~E~~~ptgS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~alA~~a~~~G~~~~i 76 (380)
T TIGR01127 1 TPLIYSTTLSDITGSEVYLKLENLQKTGSFKIRGALNKIANLSEDQR----QRGVVAASAGNHAQGVAYAAKKFGIKAVI 76 (380)
T ss_pred CCceehHHHHHHhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhcc----CCEEEEECCCHHHHHHHHHHHHcCCCEEE
Confidence 89999999999889999999999999999999999999999998886 34699999999999999999999999999
Q ss_pred EeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHHHHhhCCCCCE
Q 019047 185 TMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDI 264 (347)
Q Consensus 185 ~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei~~ql~~~~D~ 264 (347)
|||++++..|+++++.|||+|+.++. +++++.+.|.+++++. +++|+++|+|+.++ .||+|+|+||++|+ +.+|+
T Consensus 77 v~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~a~~~a~~~~~~~-~~~~~~~~~~~~~~-~g~~t~~~Ei~~q~-~~~D~ 151 (380)
T TIGR01127 77 VMPESAPPSKVKATKSYGAEVILHGD--DYDEAYAFATSLAEEE-GRVFVHPFDDEFVM-AGQGTIGLEIMEDI-PDVDT 151 (380)
T ss_pred EEcCCCcHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecCCCCChhhh-hhhHHHHHHHHHhC-CCCCE
Confidence 99999999999999999999999975 5789999999999885 78999999999887 69999999999998 47999
Q ss_pred EEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCcccc-----CC-----------------CCCCCchhccccccCeE
Q 019047 265 FVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVIS-----GE-----------------NAGYVPSILDVQLLDEV 322 (347)
Q Consensus 265 vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~-----g~-----------------~~~~~p~~l~~~~vd~~ 322 (347)
||+|+|+||+++|++.++|+.+|+++||||||++++.+. |. .++..++.+..+.+|++
T Consensus 152 vv~~vG~Gg~~aGi~~~~k~~~p~~kvigVe~~~~~~~~~~~~~g~~~~~~~~~~~a~g~~~~~~~~~~~~~~~~~vd~~ 231 (380)
T TIGR01127 152 VIVPVGGGGLISGVASAAKQINPNVKVIGVEAEGAPSMYESLREGKIKAVESVRTIADGIAVKKPGDLTFNIIKEYVDDV 231 (380)
T ss_pred EEEEeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHcCCceecCCCCCeecchhCCCccHHHHHHHHHhCCEE
Confidence 999999999999999999999999999999999885432 20 12233445566889999
Q ss_pred EEeCHHHHHHHHHHHHHhcCccccC
Q 019047 323 IKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 323 v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
++|+|+|+.+|+++|++++|+++||
T Consensus 232 v~V~d~e~~~a~~~l~~~~gi~~e~ 256 (380)
T TIGR01127 232 VTVDEEEIANAIYLLLERHKILAEG 256 (380)
T ss_pred EEECHHHHHHHHHHHHHhcCeEech
Confidence 9999999999999999999999987
|
A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes. |
| >PRK07334 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-49 Score=390.93 Aligned_cols=245 Identities=23% Similarity=0.292 Sum_probs=219.1
Q ss_pred hhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHH
Q 019047 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (347)
Q Consensus 94 ~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~ 173 (347)
..+++...+++|||+++++|++.+|++||+|+|++|||||||||++.+++.++.+... .+.|+++|+||||+|+|+
T Consensus 13 a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~~~~~~~----~~~vv~aSsGN~g~alA~ 88 (403)
T PRK07334 13 AAARLAGQVLRTPCVHSRTLSQITGAEVWLKFENLQFTASFKERGALNKLLLLTEEER----ARGVIAMSAGNHAQGVAY 88 (403)
T ss_pred HHHHHhCCCCCCCccchHHHHHhhCCeEEEEeccCCCCCCchHHHHHHHHHhcCHHHh----CCcEEEECCcHHHHHHHH
Confidence 3467788899999999999998888999999999999999999999999998764432 234899999999999999
Q ss_pred HHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHH
Q 019047 174 VAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPE 253 (347)
Q Consensus 174 aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~E 253 (347)
+|+.+|++|+||||.++++.|+.+|+.|||+|+.+++ +++++++.+.+++++. +++|+++|+|+.++ .||+|+|+|
T Consensus 89 ~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~--~~~~~~~~a~~l~~~~-~~~~~~~~~~~~~~-~g~~t~~~E 164 (403)
T PRK07334 89 HAQRLGIPATIVMPRFTPTVKVERTRGFGAEVVLHGE--TLDEARAHARELAEEE-GLTFVHPYDDPAVI-AGQGTVALE 164 (403)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECc--CHHHHHHHHHHHHHhc-CCEecCCCCCHHHH-HhHHHHHHH
Confidence 9999999999999999999999999999999999974 4788999999998885 88999999999887 699999999
Q ss_pred HHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCcccc----CC----------------CCCCCchh
Q 019047 254 IWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVIS----GE----------------NAGYVPSI 313 (347)
Q Consensus 254 i~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~----g~----------------~~~~~p~~ 313 (347)
|++|+ +.+|+||+|+|+||+++|++.++|+.+++++||||||++++.+. +. .++..++.
T Consensus 165 i~~q~-~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~ve~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~ 243 (403)
T PRK07334 165 MLEDA-PDLDTLVVPIGGGGLISGMATAAKALKPDIEIIGVQTELYPSMYAAIKGVALPCGGSTIAEGIAVKQPGQLTLE 243 (403)
T ss_pred HHhcC-CCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHhCCCccCCCCCccceecCCCccHHHHH
Confidence 99998 57999999999999999999999999999999999999875442 11 13455666
Q ss_pred ccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 314 LDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 314 l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
+.++.+|+++.|+|+|+++++++|++.+||++||
T Consensus 244 ~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~v~~ 277 (403)
T PRK07334 244 IVRRLVDDILLVSEADIEQAVSLLLEIEKTVVEG 277 (403)
T ss_pred HHHHhCCeEEEECHHHHHHHHHHHHHhcCCEEec
Confidence 7778899999999999999999999999999987
|
|
| >PRK06608 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=378.36 Aligned_cols=253 Identities=20% Similarity=0.221 Sum_probs=217.3
Q ss_pred chhhHHHHHHHhccCCCCchhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCC
Q 019047 75 ATSTREIEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITP 154 (347)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~ 154 (347)
+++..++.+. +.++...+++|||+++++|++.+|++||+|+|++||+||||+|++.+++.+++++|.+.
T Consensus 4 ~~~~~~i~~A----------~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~- 72 (338)
T PRK06608 4 LQNPQNIAAA----------HNRIKQYLHLTPIVHSESLNEMLGHEIFFKVESLQKTGAFKVRGVLNHLLELKEQGKLP- 72 (338)
T ss_pred CCCHHHHHHH----------HHHHhCcCcCCCccchHhHHHHhCCEEEEEeCCCCCCCCcHHHHHHHHHHHhhhhcCcC-
Confidence 3445556554 35677789999999999999988999999999999999999999999999999998642
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceec
Q 019047 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMF 234 (347)
Q Consensus 155 g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~ 234 (347)
++|+++|+||||.|+|++|+.+|++|+||||+++++.|+++++.+||+|+.++. .+++.+++.+ +++ +++||+
T Consensus 73 --~~vv~~SsGN~g~alA~~a~~~G~~~~vv~p~~~~~~k~~~l~~~GA~V~~~~~---~~~~~~~a~~-~~~-~~~~~~ 145 (338)
T PRK06608 73 --DKIVAYSTGNHGQAVAYASKLFGIKTRIYLPLNTSKVKQQAALYYGGEVILTNT---RQEAEEKAKE-DEE-QGFYYI 145 (338)
T ss_pred --CeEEEECCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC---HHHHHHHHHH-HHh-CCCEEc
Confidence 468999999999999999999999999999999999999999999999999973 3677777777 544 589999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccc-----cCC----
Q 019047 235 QQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVI-----SGE---- 305 (347)
Q Consensus 235 ~~~~n~~~~~~g~~ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~-----~g~---- 305 (347)
++|+|+.++ .||+|+++||++|+++.||+||+|+|+||+++|++.++|+.+++++||||||.+++.. .|.
T Consensus 146 ~~~~~~~~~-~g~~t~a~Ei~~q~~~~~D~vv~~vG~GGt~~Gi~~~~k~~~~~~~vigVep~~~~~~~~s~~~g~~~~~ 224 (338)
T PRK06608 146 HPSDSDSTI-AGAGTLCYEALQQLGFSPDAIFASCGGGGLISGTYLAKELISPTSLLIGSEPLNANDAYLSLKNNKIYRL 224 (338)
T ss_pred CCCCCHHHh-ccHHHHHHHHHHhcCCCcCEEEEeechhHHHHHHHHHHHhcCCCCEEEEEeeCCChHHHHHHHcCCeEeC
Confidence 999999887 5999999999999976899999999999999999999999999999999999987522 231
Q ss_pred --CCCC------------CchhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 306 --NAGY------------VPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 306 --~~~~------------~p~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.+.. .++.+. +.+|+++.|+|+|+.+++++|++.+||++||
T Consensus 225 ~~~~~t~~~gl~~~~~~~~~~~~~-~~~d~~v~Vsd~e~~~a~~~l~~~~gi~vep 279 (338)
T PRK06608 225 NYSPNTIADGLKTLSVSARTFEYL-KKLDDFYLVEEYEIYYWTAWLTHLLKVICEP 279 (338)
T ss_pred CCCCCCeecccCCCCCCHHHHHHH-HhCCCEEEECHHHHHHHHHHHHHHcCcEEch
Confidence 0000 012222 3479999999999999999999999999997
|
|
| >PRK06815 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-49 Score=378.90 Aligned_cols=245 Identities=22% Similarity=0.294 Sum_probs=214.1
Q ss_pred hhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHH
Q 019047 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (347)
Q Consensus 94 ~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~ 173 (347)
.++++...+++|||+++++|++..|++||+|+|++|||||||||++.+++..+.+... ...|+++|+||||+|+|+
T Consensus 10 a~~~~~~~i~~TPLv~~~~l~~~~g~~i~~K~E~~nptgS~KdR~a~~~~~~l~~~~~----~~~vv~aSsGN~g~alA~ 85 (317)
T PRK06815 10 AHQRLRPQVRVTPLEHSPLLSQHTGCEVYLKCEHLQHTGSFKFRGASNKLRLLNEAQR----QQGVITASSGNHGQGVAL 85 (317)
T ss_pred HHHHhhCCCCCCCccccHhHHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhhc----CceEEEECCChHHHHHHH
Confidence 4567788899999999999998888999999999999999999999999987643322 245899999999999999
Q ss_pred HHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHH
Q 019047 174 VAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPE 253 (347)
Q Consensus 174 aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~E 253 (347)
+|+.+|++|+||||.++++.|+.+|+.+||+|+.++++ ++++...+.+++++. +.+|+++|+|+.++ .||+|+++|
T Consensus 86 ~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~V~~~~~~--~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~-~g~~t~a~E 161 (317)
T PRK06815 86 AAKLAGIPVTVYAPEQASAIKLDAIRALGAEVRLYGGD--ALNAELAARRAAEQQ-GKVYISPYNDPQVI-AGQGTIGME 161 (317)
T ss_pred HHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHHhc-CCEEecCCCChhhh-cchhHHHHH
Confidence 99999999999999999999999999999999999864 678888888888875 78899999998877 699999999
Q ss_pred HHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccc-----cCC------------------CCCCC
Q 019047 254 IWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVI-----SGE------------------NAGYV 310 (347)
Q Consensus 254 i~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~-----~g~------------------~~~~~ 310 (347)
|++|++ .+|+||+|+|+||+++|++.++|+.+++++||||||.+++.+ .|. .++..
T Consensus 162 i~~q~~-~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~ 240 (317)
T PRK06815 162 LVEQQP-DLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGCWPANSPSLYTSLEAGEIVEVAEQPTLSDGTAGGVEPGAI 240 (317)
T ss_pred HHHhcC-CCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCcccCCCCCChhhhhccCCcccHH
Confidence 999995 699999999999999999999999999999999999987533 121 01112
Q ss_pred chhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 311 PSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 311 p~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
++.+..+.+|+++.|+|+|+++++++|+++|||++||
T Consensus 241 ~~~~~~~~~~~~~~V~d~e~~~a~~~la~~~gi~vep 277 (317)
T PRK06815 241 TFPLCQQLIDQKVLVSEEEIKEAMRLIAETDRWLIEG 277 (317)
T ss_pred HHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCCeEec
Confidence 2344567899999999999999999999999999997
|
|
| >TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-49 Score=396.73 Aligned_cols=244 Identities=25% Similarity=0.364 Sum_probs=218.3
Q ss_pred hhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHH
Q 019047 96 EDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVA 175 (347)
Q Consensus 96 ~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa 175 (347)
.+++..+++|||+++++|++.+|++||+|+|++||+||||+|+|++++..+..... .+.||++|+||||.++|++|
T Consensus 9 ~~v~~~i~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~----~~gVV~aSaGNha~~vA~aa 84 (499)
T TIGR01124 9 ARVYEAAQETPLQKAAKLSERLGNRILIKREDLQPVFSFKLRGAYNKMAQLSPEQK----ARGVIAASAGNHAQGVAFSA 84 (499)
T ss_pred hHhhCccCCCCeeehHHHHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHHhhHHhc----CCEEEEECCCHHHHHHHHHH
Confidence 46788899999999999999899999999999999999999999999988744322 35699999999999999999
Q ss_pred HHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHHH
Q 019047 176 AVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIW 255 (347)
Q Consensus 176 ~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei~ 255 (347)
+.+|++|+||||++++..|++.++.+||+|+.++. +++++.+.|.+++++. +++|+++|+|+.++ .||+|+|+||+
T Consensus 85 ~~~Gi~~~IvmP~~tp~~Kv~~~r~~GA~Vvl~g~--~~d~a~~~a~~la~~~-g~~~i~p~~~~~~i-~G~gtig~EI~ 160 (499)
T TIGR01124 85 ARLGLKALIVMPETTPDIKVDAVRGFGGEVVLHGA--NFDDAKAKAIELSQEK-GLTFIHPFDDPLVI-AGQGTLALEIL 160 (499)
T ss_pred HHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEeCc--CHHHHHHHHHHHHHhc-CCEeeCCCCChHHH-HhhHHHHHHHH
Confidence 99999999999999999999999999999999975 5789999999999886 78999999999887 69999999999
Q ss_pred HhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCcccc-----CC-----------------CCCCCchh
Q 019047 256 EDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVIS-----GE-----------------NAGYVPSI 313 (347)
Q Consensus 256 ~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~-----g~-----------------~~~~~p~~ 313 (347)
+|+.+.+|+||+|+|+||+++|++.++|..+|+++||||||.+++.+. |. .++..++.
T Consensus 161 ~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVIgVep~~~~~~~~s~~~g~~~~~~~~~t~adgiav~~~g~~~~~ 240 (499)
T TIGR01124 161 RQVANPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIGVEPTDSDCMKQALDAGEPVDLDQVGLFADGVAVKRVGDETFR 240 (499)
T ss_pred HhCCCCCCEEEEccCccHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCceeCCCCCCccCcccCCCccHHHHH
Confidence 999668999999999999999999999999999999999999875432 21 01233456
Q ss_pred ccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 314 LDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 314 l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
+.++.+|++++|+|+|+.+|++.|++++|++++|
T Consensus 241 ~~~~~vd~vv~V~d~ei~~ai~~l~~~~gii~Ep 274 (499)
T TIGR01124 241 LCQQYLDDIVTVDTDEVCAAIKDLFEDTRAVAEP 274 (499)
T ss_pred HHHHhCCEEEEECHHHHHHHHHHHHHhcCcEEec
Confidence 6678999999999999999999999999999987
|
Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain. |
| >PLN02550 threonine dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-49 Score=399.93 Aligned_cols=243 Identities=23% Similarity=0.339 Sum_probs=216.9
Q ss_pred hhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHH
Q 019047 97 DVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAA 176 (347)
Q Consensus 97 ~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~ 176 (347)
+++..+++|||+++++|++.+|++||+|+|++|||||||+|+|.+.+..+.+... .+.|+++|+||||++||++|+
T Consensus 102 ~v~~~i~~TPL~~s~~LS~~~g~~IylK~E~lqptGSFK~RGA~n~I~~L~~e~~----~~GVV~aSaGNhAqgvA~aA~ 177 (591)
T PLN02550 102 KVYDVAIESPLQLAKKLSERLGVKVLLKREDLQPVFSFKLRGAYNMMAKLPKEQL----DKGVICSSAGNHAQGVALSAQ 177 (591)
T ss_pred hhhccccCChhhhhHHhhHhhCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHhcC----CCCEEEECCCHHHHHHHHHHH
Confidence 5678899999999999999999999999999999999999999999998854432 245899999999999999999
Q ss_pred HcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHHHH
Q 019047 177 VKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWE 256 (347)
Q Consensus 177 ~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei~~ 256 (347)
.+|++|+||||++++..|++.++.|||+|+.++. +++++.+.|.+++++. +.+|+++|+|+.++ .||+|+|+||++
T Consensus 178 ~lGika~IvmP~~tp~~Kv~~~r~~GAeVvl~g~--~~dea~~~A~~la~e~-g~~fi~pfddp~vi-aGqgTig~EI~e 253 (591)
T PLN02550 178 RLGCDAVIAMPVTTPEIKWQSVERLGATVVLVGD--SYDEAQAYAKQRALEE-GRTFIPPFDHPDVI-AGQGTVGMEIVR 253 (591)
T ss_pred HcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEEECCCCChHHH-HHHHHHHHHHHH
Confidence 9999999999999999999999999999999985 4789999999999886 77899999999987 699999999999
Q ss_pred hhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccc-----cCC-----------------CCCCCchhc
Q 019047 257 DTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVI-----SGE-----------------NAGYVPSIL 314 (347)
Q Consensus 257 ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~-----~g~-----------------~~~~~p~~l 314 (347)
|+.+.+|+||+|+|+||+++|++.++|+.+|++|||||||++++.+ .|. .++..++.+
T Consensus 254 Ql~~~~D~VvvpVGgGGLiaGia~~lK~l~p~vkVIGVEp~~a~~~~~s~~~G~~v~~~~~~tiAdGiav~~~G~~t~~i 333 (591)
T PLN02550 254 QHQGPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIGVEPSDANAMALSLHHGERVMLDQVGGFADGVAVKEVGEETFRL 333 (591)
T ss_pred HcCCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCccccCCCCCccceeecCCCCHHHHHH
Confidence 9965799999999999999999999999999999999999987443 221 112234455
Q ss_pred cccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 315 DVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 315 ~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.++++|++++|+|+|+.+|++.|++.+|++++|
T Consensus 334 ~~~~vD~vV~Vsd~eI~~Ai~~l~e~~givvEp 366 (591)
T PLN02550 334 CRELVDGVVLVSRDAICASIKDMFEEKRSILEP 366 (591)
T ss_pred HHhhCCEEEEECHHHHHHHHHHHHHHCCCEEeH
Confidence 678999999999999999999999999999986
|
|
| >PRK07409 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-48 Score=380.15 Aligned_cols=258 Identities=23% Similarity=0.220 Sum_probs=221.8
Q ss_pred HHHHHHhccCCCCchhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEE
Q 019047 80 EIEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVL 159 (347)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~v 159 (347)
.++.+|++++|..+...++++++|+|||++++.|++.+|++||+|+|++|||||||||++.+++.+++++|. ..|
T Consensus 7 ~~~~~~~~~lp~~~~~~~~~l~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~-----~~i 81 (353)
T PRK07409 7 GLIEAYRDRLPVTDDTPVVTLGEGNTPLIPAPNLSELLGVEVYVKYEGLNPTGSFKDRGMTMAVTKAKEEGA-----KAV 81 (353)
T ss_pred cchHHHHHhCCCCCccCcccCCCCCCCEEEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCCC-----CEE
Confidence 567779999999776667899999999999999998888899999999999999999999999999999885 469
Q ss_pred EEeCCChhHHHHHHHHHHcCCcEEEEeCCC-CCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCC
Q 019047 160 VEPTTGNTGLGIAFVAAVKGYKLIVTMPAS-TNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFD 238 (347)
Q Consensus 160 v~assGN~g~AlA~aa~~~Gl~~~I~vp~~-~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~ 238 (347)
|++|+||||.|+|++|+.+|++|+||||++ ++..|+++|+.+||+|+.+++ +++++.+.+.++++++ +++++++ .
T Consensus 82 v~aSsGN~g~alA~~a~~~G~~~~ivvP~~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~l~~~~-~~~~~~~-~ 157 (353)
T PRK07409 82 ICASTGNTSASAAAYAARAGLKAFVLIPEGKIALGKLAQAVMYGAEIIQIDG--NFDDALEIVRELAEKY-PVTLVNS-V 157 (353)
T ss_pred EEECCcHHHHHHHHHHHHcCCCEEEEEcCCCCchhhHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-CceecCC-C
Confidence 999999999999999999999999999997 689999999999999999986 4688999999988876 4677765 5
Q ss_pred ChHHHHHHHHHHHHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCC------CCeEEEEcCCCCccccCCC----CC
Q 019047 239 NMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNK------EIKVVGVEPAERSVISGEN----AG 308 (347)
Q Consensus 239 n~~~~~~g~~ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~------~~~vigVep~~~~~~~g~~----~~ 308 (347)
|+.++ .||.|+++||++|+++.+|+||+|+|+||+++|++.+|++..+ .++||+|||.+++.+..+. +.
T Consensus 158 n~~~~-~g~~t~~~EI~~q~~~~~d~iv~~vG~GG~~~Gi~~g~~~~~~~~~~~~~~kvigVep~g~~~~~~g~~~~~~~ 236 (353)
T PRK07409 158 NPYRI-EGQKTAAFEIVDALGDAPDYHCIPVGNAGNITAYWKGYKEYHQDGKSTKLPRMMGFQAAGAAPIVRGEPVKNPE 236 (353)
T ss_pred Cchhh-hhHHHHHHHHHHHhCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCccCCCeEEEEecCCCChHhhCCcCCCCc
Confidence 88887 5999999999999976899999999999999999999988632 5999999998875432211 00
Q ss_pred C--------Cchh------ccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 309 Y--------VPSI------LDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 309 ~--------~p~~------l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
. .|.. +.++..++++.|+|+|+++++++|+++|||++||
T Consensus 237 ti~~~l~~~~~~~~~~~~~~~~~~~~~~v~Vsd~e~~~a~~~l~~~egi~v~p 289 (353)
T PRK07409 237 TIATAIRIGNPASWDKAVAARDESGGLIDAVTDEEILEAYRLLARKEGVFCEP 289 (353)
T ss_pred ceeeeeecCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHHhCCceeCc
Confidence 0 0111 1233456799999999999999999999999997
|
|
| >cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-49 Score=375.53 Aligned_cols=245 Identities=25% Similarity=0.370 Sum_probs=218.2
Q ss_pred hhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHH
Q 019047 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (347)
Q Consensus 94 ~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~ 173 (347)
.++.+...+++|||+++++|++.+|++||+|+|++|||||||||++.+++.++++.|. ...|+++|+||||+|+|+
T Consensus 7 ~~~~i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptgS~Kdr~a~~~l~~~~~~~~----~~~iv~~ssGN~g~alA~ 82 (304)
T cd01562 7 AAARIKPVVRRTPLLTSPTLSELLGAEVYLKCENLQKTGSFKIRGAYNKLLSLSEEER----AKGVVAASAGNHAQGVAY 82 (304)
T ss_pred HHHHHhCcCCCCCcccchhhHHHhCCeEEEEeccCCCcCCcHHHhHHHHHHhcCHhhc----CCcEEEECCCHHHHHHHH
Confidence 4567888999999999999999888999999999999999999999999999988763 245899999999999999
Q ss_pred HHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHH
Q 019047 174 VAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPE 253 (347)
Q Consensus 174 aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~E 253 (347)
+|+.+|++|+||||++.+..|+++|+.+||+|+.++++ ++++++.+.+++++. +++|+++|+|+.++ .||+++++|
T Consensus 83 ~a~~~G~~~~ivvp~~~~~~k~~~l~~~Ga~vi~~~~~--~~~~~~~a~~la~~~-~~~~~~~~~n~~~~-~g~~~~~~E 158 (304)
T cd01562 83 AAKLLGIPATIVMPETAPAAKVDATRAYGAEVVLYGED--FDEAEAKARELAEEE-GLTFIHPFDDPDVI-AGQGTIGLE 158 (304)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCC--HHHHHHHHHHHHHhc-CCEEeCCCCCcchh-ccHHHHHHH
Confidence 99999999999999999999999999999999999964 688999999999886 78999999999886 599999999
Q ss_pred HHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccc-----cCC-----------------CCCCCc
Q 019047 254 IWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVI-----SGE-----------------NAGYVP 311 (347)
Q Consensus 254 i~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~-----~g~-----------------~~~~~p 311 (347)
|++|+++ ||+||+|+|+||+++|++.+||+.+++++||+|||..++.+ +|. .+...+
T Consensus 159 i~~q~~~-~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~ 237 (304)
T cd01562 159 ILEQVPD-LDAVFVPVGGGGLIAGIATAVKALSPNTKVIGVEPEGAPAMAQSLAAGKPVTLPEVDTIADGLAVKRPGELT 237 (304)
T ss_pred HHHhcCC-CCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHcCCcccCCCCCcccccccCCCchHHH
Confidence 9999964 99999999999999999999999999999999999877543 221 011223
Q ss_pred hhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 312 SILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 312 ~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
+.+.++.+|.++.|+|+|+++++++|+++|||++||
T Consensus 238 ~~~~~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~~p 273 (304)
T cd01562 238 FEIIRKLVDDVVTVSEDEIAAAMLLLFEREKLVAEP 273 (304)
T ss_pred HHHHHHhCCeEEEECHHHHHHHHHHHHHHcCceEch
Confidence 345567899999999999999999999999999997
|
Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions. |
| >PRK08246 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-48 Score=373.36 Aligned_cols=247 Identities=26% Similarity=0.356 Sum_probs=215.1
Q ss_pred hhhHHHHHHHhccCCCCchhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCC
Q 019047 76 TSTREIEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPG 155 (347)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g 155 (347)
++.+++.+.+ +++...+++|||+++++++.+ |++||+|+|++|||||||+|++.+++.++.+ +
T Consensus 5 ~~~~~i~~a~----------~~i~~~i~~TPl~~~~~l~~~-~~~i~~K~E~~nptGS~K~R~a~~~~~~~~~-~----- 67 (310)
T PRK08246 5 ITRSDVRAAA----------QRIAPHIRRTPVLEADGAGFG-PAPVWLKLEHLQHTGSFKARGAFNRLLAAPV-P----- 67 (310)
T ss_pred CCHHHHHHHH----------HHHhCcCCCCCeeeccccccC-CCEEEEEECCCCCCCCCHHHHHHHHHHhhcc-c-----
Confidence 3455666653 567888999999999999876 7899999999999999999999999988766 2
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecC
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQ 235 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~ 235 (347)
.+.|+++|+||||+|+|++|+.+|++|+||||+++++.|+.+++.+||+|+.+++ +++++++.+.+++++. +++|++
T Consensus 68 ~~~vv~aSsGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~ 144 (310)
T PRK08246 68 AAGVVAASGGNAGLAVAYAAAALGVPATVFVPETAPPAKVARLRALGAEVVVVGA--EYADALEAAQAFAAET-GALLCH 144 (310)
T ss_pred CCeEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEeCC
Confidence 2569999999999999999999999999999999999999999999999999985 4678899999888876 899999
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCcccc-----CCC----
Q 019047 236 QFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVIS-----GEN---- 306 (347)
Q Consensus 236 ~~~n~~~~~~g~~ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~-----g~~---- 306 (347)
+|+|+.++ .||+|+|+||++|+ +.||+||+|+|+||+++|++.+|+. .++||+|||.+++.+. |..
T Consensus 145 ~~~n~~~i-~g~~t~~~Ei~eq~-~~~D~iv~~vG~GG~~~Gi~~~~~~---~~~vi~ve~~~~~~~~~s~~~g~~~~~~ 219 (310)
T PRK08246 145 AYDQPEVL-AGAGTLGLEIEEQA-PGVDTVLVAVGGGGLIAGIAAWFEG---RARVVAVEPEGAPTLHAALAAGEPVDVP 219 (310)
T ss_pred CCCChhhh-cchHHHHHHHHHhc-CCCCEEEEecCccHHHHHHHHHhcC---CCEEEEEeeCCChHHHHHHHcCCcccCC
Confidence 99999987 59999999999998 5799999999999999999999965 4899999999885432 210
Q ss_pred -------------CCCCchhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 307 -------------AGYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 307 -------------~~~~p~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.+..++.+.++.+|+++.|+|+|+.+++++|++++||++||
T Consensus 220 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Vsd~e~~~a~~~l~~~egi~~e~ 273 (310)
T PRK08246 220 VSGIAADSLGARRVGEIAFALARAHVVTSVLVSDEAIIAARRALWEELRLAVEP 273 (310)
T ss_pred CCCceeccccCCCccHHHHHHHHhcCCeEEEECHHHHHHHHHHHHHHcCceeeh
Confidence 12234456678899999999999999999999999999987
|
|
| >PRK08813 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-48 Score=376.07 Aligned_cols=235 Identities=24% Similarity=0.346 Sum_probs=209.5
Q ss_pred hhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHH
Q 019047 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (347)
Q Consensus 94 ~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~ 173 (347)
..+++...+.+|||++++.+ +||+|+|++|||||||+|+|.+++.++.+.|. .+.|+++|+||||.|||+
T Consensus 29 A~~~i~~~i~~TPL~~~~~l------~v~lK~E~~nptGSfK~RgA~~~l~~a~~~~~----~~~VV~aSsGN~G~alA~ 98 (349)
T PRK08813 29 AQARLRRYLSPTPLHYAERF------GVWLKLENLQRTGSYKVRGALNALLAGLERGD----ERPVICASAGNHAQGVAW 98 (349)
T ss_pred HHHHHhCcCCCCCeEECCCC------cEEEEecCCCCcCCCHHHHHHHHHHHHHHcCC----CCeEEEECCCHHHHHHHH
Confidence 34778889999999998765 49999999999999999999999999999986 345999999999999999
Q ss_pred HHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHH
Q 019047 174 VAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPE 253 (347)
Q Consensus 174 aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~E 253 (347)
+|+.+|++|+||||.++++.|+++++.|||+|+.++. +++++.+.+.++++++ +++|+++|+|+.++ .||+|+|+|
T Consensus 99 aa~~~Gi~~~IvvP~~~~~~K~~~i~~~GAeVv~~g~--~~~~a~~~a~~la~~~-g~~~v~~~~np~~i-~G~~Tig~E 174 (349)
T PRK08813 99 SAYRLGVQAITVMPHGAPQTKIAGVAHWGATVRQHGN--SYDEAYAFARELADQN-GYRFLSAFDDPDVI-AGQGTVGIE 174 (349)
T ss_pred HHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEcCccCChHHH-HHHHHHHHH
Confidence 9999999999999999999999999999999999975 5789999999999886 89999999999998 599999999
Q ss_pred HHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccc----cCC-----------------CCCCCch
Q 019047 254 IWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVI----SGE-----------------NAGYVPS 312 (347)
Q Consensus 254 i~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~----~g~-----------------~~~~~p~ 312 (347)
|++| .||+||+|+|+||+++|++.++|+ +.++||||||++++.+ .|. .++..++
T Consensus 175 I~e~---~pD~VvvpvGgGGliaGia~~lk~--~~~rVigVqpega~~~~~s~~g~~~~~~~~~tiadgl~~~~p~~~~~ 249 (349)
T PRK08813 175 LAAH---APDVVIVPIGGGGLASGVALALKS--QGVRVVGAQVEGVDSMARAIRGDLREIAPVATLADGVKVKIPGFLTR 249 (349)
T ss_pred HHcC---CCCEEEEEeCccHHHHHHHHHHhc--CCCEEEEEEECCCchHHHHHcCCCcccCCCCceecccccCCcchhHH
Confidence 9987 489999999999999999999996 4699999999987432 121 1234556
Q ss_pred hccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 313 ILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 313 ~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.+.++.+|+++.|+|+|+.+|+++|++++|++++|
T Consensus 250 ~i~~~~vd~vv~Vsd~ei~~a~~~l~~~~gl~vE~ 284 (349)
T PRK08813 250 RLCSSLLDDVVIVREAELRETLVRLALEEHVIAEG 284 (349)
T ss_pred HHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEEEE
Confidence 66778899999999999999999999999999986
|
|
| >PRK09224 threonine dehydratase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-48 Score=393.46 Aligned_cols=244 Identities=25% Similarity=0.357 Sum_probs=218.1
Q ss_pred hhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHH
Q 019047 96 EDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVA 175 (347)
Q Consensus 96 ~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa 175 (347)
.+++..+++|||+++++|++.+|++||+|+|++|||||||+|+|.+.+..+.+... .+.||++|+||||+++|++|
T Consensus 12 ~~v~~~~~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~----~~gvV~aSaGNha~avA~aa 87 (504)
T PRK09224 12 ARVYDVAQETPLEKAPKLSARLGNQVLLKREDLQPVFSFKLRGAYNKMAQLTEEQL----ARGVITASAGNHAQGVALSA 87 (504)
T ss_pred HHhcCcCCCCCceehhHhHHHhCCEEEEEecCCCCCCCChHHHHHHHHHhhhHHhc----CCEEEEECcCHHHHHHHHHH
Confidence 46788899999999999999899999999999999999999999999988764322 35699999999999999999
Q ss_pred HHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHHH
Q 019047 176 AVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIW 255 (347)
Q Consensus 176 ~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei~ 255 (347)
+.+|++|+||||++++..|++.++.+||+|+.++. ++++++++|.+++++. +++|+++|+|+.++ .||+|+|+||+
T Consensus 88 ~~lGi~~~IvmP~~tp~~K~~~~r~~GA~Vi~~g~--~~~~a~~~a~~l~~~~-g~~~v~~f~~~~~i-~G~gTi~~EI~ 163 (504)
T PRK09224 88 ARLGIKAVIVMPVTTPDIKVDAVRAFGGEVVLHGD--SFDEAYAHAIELAEEE-GLTFIHPFDDPDVI-AGQGTIAMEIL 163 (504)
T ss_pred HHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcHHH-HhHHHHHHHHH
Confidence 99999999999999999999999999999999985 5799999999999885 88999999999987 69999999999
Q ss_pred HhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCcccc-----CC-----------------CCCCCchh
Q 019047 256 EDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVIS-----GE-----------------NAGYVPSI 313 (347)
Q Consensus 256 ~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~-----g~-----------------~~~~~p~~ 313 (347)
+|+++.+|+||+|+|+||+++|++.++|..+|+++||||||.+++.+. |. .++..++.
T Consensus 164 ~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVigVe~~~~~~~~~s~~~g~~~~~~~~~~~adg~av~~~g~~~~~ 243 (504)
T PRK09224 164 QQHPHPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGVEPEDSACLKAALEAGERVDLPQVGLFADGVAVKRIGEETFR 243 (504)
T ss_pred HhccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCCccCCCCCcccCcccCCCccHHHHH
Confidence 999656999999999999999999999999999999999998875432 21 11223455
Q ss_pred ccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 314 LDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 314 l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
+.++.+|++++|+|+|+.+|+++|++++|++++|
T Consensus 244 ~~~~~vd~~v~Vsd~ei~~a~~~l~~~~~~~~ep 277 (504)
T PRK09224 244 LCQEYVDDVITVDTDEICAAIKDVFEDTRSIAEP 277 (504)
T ss_pred HHHhcCCeEEEECHHHHHHHHHHHHHhcCeEEcH
Confidence 6678999999999999999999999999999987
|
|
| >PRK06260 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-48 Score=382.84 Aligned_cols=255 Identities=24% Similarity=0.221 Sum_probs=221.1
Q ss_pred HHHHHHhccCCCCchhhhhhhccCCCceeeccccccCCCC-eEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeE
Q 019047 80 EIEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVG-NVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTV 158 (347)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~v~~~~~~TPLv~~~~l~~~~g~-~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~ 158 (347)
.+|+ |++++|+. ...+++++|+|||+++++|++.+|. +||+|+|++|||||||||++.+++.++++.|. ..
T Consensus 46 ~~wr-y~~~lp~~--~~~v~l~~G~TPLv~~~~l~~~~g~~~l~~K~E~~nPTGSfKdRga~~~v~~a~~~g~-----~~ 117 (397)
T PRK06260 46 GVWR-YKELLPVK--KKIVSLNEGGTPLYRCPNLEKELGVKELYVKHEGANPTGSFKDRGMTVGVTKALELGV-----KT 117 (397)
T ss_pred ceee-ehhhcCCC--CCcccCCCCCCCeEEchhhHHHhCCCcEEEEeCCCCCCcCcHHHHHHHHHHHHHHcCC-----CE
Confidence 5776 89999996 2478999999999999999988887 99999999999999999999999999999985 56
Q ss_pred EEEeCCChhHHHHHHHHHHcCCcEEEEeCCC-CCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCC
Q 019047 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS-TNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQF 237 (347)
Q Consensus 159 vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~-~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~ 237 (347)
|+++|+||||.|+|++|+.+|++|+||||++ ++..|+.+++.+||+|+.+++ +++++++.+.+++++. ++|+++++
T Consensus 118 vv~aSsGN~g~alA~~aa~~G~~~~i~vP~~~~~~~k~~~~~~~GA~vi~v~~--~~~~~~~~a~~~~~~~-g~y~~~~~ 194 (397)
T PRK06260 118 VACASTGNTSASLAAYAARAGLKCYVLLPAGKVALGKLAQALLHGAKVLEVDG--NFDDALDMVVELAKEG-KIYLLNSI 194 (397)
T ss_pred EEEeCCcHHHHHHHHHHHHcCCcEEEEEeCCCccHHHHHHHHhcCCEEEEECC--cHHHHHHHHHHHHhhC-CEEeecCC
Confidence 8999999999999999999999999999997 789999999999999999986 4688999999988876 78888887
Q ss_pred CChHHHHHHHHHHHHHHHHhhCC-CCCEEEEecCcchHHHHHHHHHHhcC------CCCeEEEEcCCCCccc-----cCC
Q 019047 238 DNMANLKIHFDSTGPEIWEDTLG-CVDIFVAAIGTGGTITGTGRFLKMMN------KEIKVVGVEPAERSVI-----SGE 305 (347)
Q Consensus 238 ~n~~~~~~g~~ti~~Ei~~ql~~-~~D~vv~pvG~Gg~~~Gi~~~~k~~~------~~~~vigVep~~~~~~-----~g~ 305 (347)
|+.++ .||+|+++||++|+++ .||+||+|+|+||+++|++.+|+++. +.+|||+|||.+++.+ .|.
T Consensus 195 -np~~~-~G~~t~a~Ei~eQl~~~~pd~vvvpvG~Gg~~~Gi~~~~~~l~~~G~i~~~prii~Vq~~g~~~~~~a~~~g~ 272 (397)
T PRK06260 195 -NPFRL-EGQKTIGFEIADQLGWEVPDRVVLPVGNAGNISAIWKGFKELVELGIIDKLPKMTGIQAEGAAPIVEAIKKGK 272 (397)
T ss_pred -Cchhh-cchhhHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHhcCCcCCCCeEEEEecCCCcHHHHHHHcCC
Confidence 88887 5999999999999976 79999999999999999999999875 3489999999987533 221
Q ss_pred C-------CCC------C--ch------hccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 306 N-------AGY------V--PS------ILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 306 ~-------~~~------~--p~------~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
. +.. + |. .+.++..++++.|+|+|++++++.|+++|||++||
T Consensus 273 ~~~~~~~~~~tia~~i~i~~p~~~~~~~~~l~~~~g~~v~V~d~e~~~a~~~la~~eGi~vep 335 (397)
T PRK06260 273 DEIEPVENPETVATAIRIGNPVNAPKALRAIRESGGTAEAVSDEEILDAQKLLARKEGIGVEP 335 (397)
T ss_pred CcccccCCCCceeeeeEeCCCCCHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHhCCCeeCc
Confidence 1 000 0 21 12334457899999999999999999999999997
|
|
| >cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-48 Score=372.03 Aligned_cols=253 Identities=25% Similarity=0.258 Sum_probs=220.4
Q ss_pred HHhccCCCCchhhhhhhccCCCceeeccccccCCC-CeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEe
Q 019047 84 EEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCV-GNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEP 162 (347)
Q Consensus 84 ~~~~~~~~~~~~~~v~~~~~~TPLv~~~~l~~~~g-~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~a 162 (347)
+|.+++|.. ..+++.+++++|||+++++|++..| .+||+|+|++|||||||+|++.+++.+++++|. +.|+++
T Consensus 3 ~~~~~~~~~-~~~~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-----~~vv~~ 76 (324)
T cd01563 3 RYRELLPVT-EDDIVSLGEGNTPLVRAPRLGERLGGKNLYVKDEGLNPTGSFKDRGMTVAVSKAKELGV-----KAVACA 76 (324)
T ss_pred cchhhCCCC-CCCcccCCCCCCceeechhhHhhcCCCceEEEecCCCCcccHHHhhHHHHHHHHHHcCC-----CEEEEe
Confidence 388899976 4567999999999999999998776 799999999999999999999999999999884 568999
Q ss_pred CCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHH
Q 019047 163 TTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMAN 242 (347)
Q Consensus 163 ssGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~ 242 (347)
|+||||+|+|++|+.+|++|+||||+++++.|+++|+.+||+|+.++. +++++.+.+.++++++ .+|+++|+|+.+
T Consensus 77 SsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~GA~Vi~~~~--~~~~~~~~a~~~~~~~--~~~~~~~~n~~~ 152 (324)
T cd01563 77 STGNTSASLAAYAARAGIKCVVFLPAGKALGKLAQALAYGATVLAVEG--NFDDALRLVRELAEEN--WIYLSNSLNPYR 152 (324)
T ss_pred CCCHHHHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHcCCEEEEECC--cHHHHHHHHHHHHHhc--CeeccCCCCcce
Confidence 999999999999999999999999999999999999999999999986 4678888999988875 788999999999
Q ss_pred HHHHHHHHHHHHHHhhCC-CCCEEEEecCcchHHHHHHHHHHhcC------CCCeEEEEcCCCCccc-----cCCC----
Q 019047 243 LKIHFDSTGPEIWEDTLG-CVDIFVAAIGTGGTITGTGRFLKMMN------KEIKVVGVEPAERSVI-----SGEN---- 306 (347)
Q Consensus 243 ~~~g~~ti~~Ei~~ql~~-~~D~vv~pvG~Gg~~~Gi~~~~k~~~------~~~~vigVep~~~~~~-----~g~~---- 306 (347)
+ .||.|++.||++|+++ .+|+||+|+|+||+++|++.++|+.. ++++||||||.+++.+ .|..
T Consensus 153 ~-~g~~t~~~Ei~~q~~~~~~d~vv~~vGtGg~~~G~~~~~k~~~~~g~~~~~~~vigve~~~~~~~~~~~~~g~~~~~~ 231 (324)
T cd01563 153 L-EGQKTIAFEIAEQLGWEVPDYVVVPVGNGGNITAIWKGFKELKELGLIDRLPRMVGVQAEGAAPIVRAFKEGKDDIEP 231 (324)
T ss_pred e-cchhhhHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHHHHHhCCccccCCeEEEEecCCCCHHHHHHHcCCCccCc
Confidence 7 5999999999999964 69999999999999999999999874 5799999999887432 2210
Q ss_pred ------------CCCC---c--hhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 307 ------------AGYV---P--SILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 307 ------------~~~~---p--~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.... + +.+..+..|+++.|+|+|+++++++|+++|||++||
T Consensus 232 ~~~~~t~~~gl~~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p 289 (324)
T cd01563 232 VENPETIATAIRIGNPASGPKALRAVRESGGTAVAVSDEEILEAQKLLARTEGIFVEP 289 (324)
T ss_pred CCCCCceeeeeecCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhcCCceeCc
Confidence 0010 1 122345668999999999999999999999999997
|
It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants. |
| >PRK06381 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-47 Score=368.80 Aligned_cols=239 Identities=23% Similarity=0.320 Sum_probs=208.2
Q ss_pred hccCCCceeeccccccCCC-CeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHc
Q 019047 100 QLIGRTPMVYLNKVTEGCV-GNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVK 178 (347)
Q Consensus 100 ~~~~~TPLv~~~~l~~~~g-~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~ 178 (347)
..+++|||+++++|++.+| .+||+|+|++|||||||+|++.+++.+++++|. +.|+++|+||||+|+|++|+.+
T Consensus 11 ~~~g~TPL~~~~~l~~~~G~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-----~~lv~aSsGN~g~alA~~aa~~ 85 (319)
T PRK06381 11 KPPGGTPLLRARKLEEELGLRKIYLKFEGANPTGTQKDRIAEAHVRRAMRLGY-----SGITVGTCGNYGASIAYFARLY 85 (319)
T ss_pred ccCCCCceeEhHhhHHhcCCceEEEEecCCCCccCcHHHHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHHHHc
Confidence 4588999999999999888 599999999999999999999999999999985 5689999999999999999999
Q ss_pred CCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCC-Ch-HHHHHHHHHHHHHHHH
Q 019047 179 GYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFD-NM-ANLKIHFDSTGPEIWE 256 (347)
Q Consensus 179 Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~-n~-~~~~~g~~ti~~Ei~~ 256 (347)
|++|+||||.+.+..|+++|+.+||+|+.++++ ++++++.+.+++++. ++|++++++ |+ .++ .||+|+++||++
T Consensus 86 G~~~~ivvp~~~~~~~~~~l~~~GA~V~~~~~~--~~~~~~~a~~~~~~~-~~~~~~~~~~n~~~~~-~G~~t~a~Ei~~ 161 (319)
T PRK06381 86 GLKAVIFIPRSYSNSRVKEMEKYGAEIIYVDGK--YEEAVERSRKFAKEN-GIYDANPGSVNSVVDI-EAYSAIAYEIYE 161 (319)
T ss_pred CCcEEEEECCCCCHHHHHHHHHcCCEEEEcCCC--HHHHHHHHHHHHHHc-CcEecCCCCCCcchHh-hhHHHHHHHHHH
Confidence 999999999999999999999999999999864 678899999998875 788888886 66 455 699999999999
Q ss_pred hhCCCCCEEEEecCcchHHHHHHHHHHhc------CCCCeEEEEcCCCCccc-----cCC------CCCCC-------c-
Q 019047 257 DTLGCVDIFVAAIGTGGTITGTGRFLKMM------NKEIKVVGVEPAERSVI-----SGE------NAGYV-------P- 311 (347)
Q Consensus 257 ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~------~~~~~vigVep~~~~~~-----~g~------~~~~~-------p- 311 (347)
|++..||+||+|+|+||+++|++.+||+. +++++||+|||..++.+ .|. ..+.+ |
T Consensus 162 ql~~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~ 241 (319)
T PRK06381 162 ALGDVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIGVSTSGGNQIVESFKRGSSEVVDLEVDEIRETAVNEPL 241 (319)
T ss_pred HhCCCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEEEEeeCCCCHHHHHHHcCCCcccCCCcchhhhcccCCCc
Confidence 99768999999999999999999999998 78999999999886322 221 01111 1
Q ss_pred -----------hhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 312 -----------SILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 312 -----------~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
+.+.++..++.+.|+|+|+++++++|+++|||++||
T Consensus 242 ~~~~~~~~~~~~~~~~~~~g~~~~v~d~e~~~a~~~la~~egi~~ep 288 (319)
T PRK06381 242 VSYRSFDGDNALEAIYDSHGYAFGFSDDEMVKYAELLRRMEGLNALP 288 (319)
T ss_pred ccccCCCHHHHHHHHHHcCCEEEEECHHHHHHHHHHHHHhCCcccCc
Confidence 112345566899999999999999999999999997
|
|
| >PRK08329 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-47 Score=368.93 Aligned_cols=248 Identities=21% Similarity=0.168 Sum_probs=213.8
Q ss_pred HHHHHHhccCCCCchhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEE
Q 019047 80 EIEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVL 159 (347)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~v 159 (347)
.+|+ |++++|+.+. ..+++++|.|||+++. .+||+|+|++|||||||||++.+++.++++.|. ..|
T Consensus 42 ~~wr-y~~~lP~~~~-~~~sl~eg~Tpl~~~~-------~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~-----~~v 107 (347)
T PRK08329 42 DMRR-YIDYLPVDEE-FLPHLTPPITPTVKRS-------IKVYFKLDYLQPTGSFKDRGTYVTVAKLKEEGI-----NEV 107 (347)
T ss_pred chhh-hHHhCCCCCC-CCCcCCCCCCccccCC-------CeEEEEeCCCCCCcCCHHHHHHHHHHHHHHcCC-----CEE
Confidence 5776 9999999664 3579999999999872 489999999999999999999999999999986 569
Q ss_pred EEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCC
Q 019047 160 VEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDN 239 (347)
Q Consensus 160 v~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n 239 (347)
+++|+||||+|+|++|+.+|++|+||||+++++.|+.+++.|||+|+.++++ ++++.+.+.+++++. +.+|++++.|
T Consensus 108 v~aSsGN~g~alA~~aa~~G~~~~v~vp~~~~~~k~~~~~~~GA~v~~v~~~--~~~~~~~a~~l~~~~-~~~~~~~~~n 184 (347)
T PRK08329 108 VIDSSGNAALSLALYSLSEGIKVHVFVSYNASKEKISLLSRLGAELHFVEGD--RMEVHEEAVKFSKRN-NIPYVSHWLN 184 (347)
T ss_pred EEECCCcHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhc-CCeeccCCCC
Confidence 9999999999999999999999999999999999999999999999999864 467788888888875 6788888889
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcC------CCCeEEEEcCCCCccccC---------
Q 019047 240 MANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMN------KEIKVVGVEPAERSVISG--------- 304 (347)
Q Consensus 240 ~~~~~~g~~ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~------~~~~vigVep~~~~~~~g--------- 304 (347)
+.++ .||+|+++||++|++ .||+||+|+|+||+++|++.+||++. +.++||+|||.+++.+..
T Consensus 185 p~~~-eG~~t~~~Ei~eql~-~pD~vvvpvG~Gg~l~Gi~~g~kel~~~g~i~~~p~ii~Vq~~g~~~~~~~~~~~~t~a 262 (347)
T PRK08329 185 PYFL-EGTKTIAYEIYEQIG-VPDYAFVPVGSGTLFLGIWKGFKELHEMGEISKMPKLVAVQAEGYESLCKRSKSENKLA 262 (347)
T ss_pred chhh-ccchhHHHHHHHHcC-CCCEEEEeCCcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCchHHhccCCCCcee
Confidence 9887 599999999999995 89999999999999999999999863 568999999998754422
Q ss_pred --CCCCCCc-----hhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 305 --ENAGYVP-----SILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 305 --~~~~~~p-----~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
......+ +.+.++..+.++.|+|+|+.+|+++|++ +||+++|
T Consensus 263 ~gi~i~~~~~~~~~~~~l~~~~g~~~~V~d~e~~~a~~~l~~-~Gi~vep 311 (347)
T PRK08329 263 DGIAIPEPPRKEEMLRALEESNGFCISVGEEETRAALHWLRR-MGFLVEP 311 (347)
T ss_pred eeEEeCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHh-cCceECc
Confidence 1111111 1234556678999999999999999995 8999997
|
|
| >PRK04346 tryptophan synthase subunit beta; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-46 Score=370.36 Aligned_cols=283 Identities=19% Similarity=0.263 Sum_probs=225.0
Q ss_pred ccccCCCCCCCCcccchhhHHHHHHHhccCCCCchhhhh----hhccC-CCceeeccccccCC-CCeEEEEeCCCCCCCc
Q 019047 60 AKAGAAASSSSSSLYATSTREIEKEEGNDFHGVNIAEDV----TQLIG-RTPMVYLNKVTEGC-VGNVAAKLESMEPCRS 133 (347)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v----~~~~~-~TPLv~~~~l~~~~-g~~Iy~K~E~~~ptGS 133 (347)
.+...+....-|+...+...||.+.|......+....++ ..+++ +|||+++++|++.+ |++||+|+|++|||||
T Consensus 9 ~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~grpTPL~~~~~Ls~~~gg~~IylK~EdlnptGS 88 (397)
T PRK04346 9 GYFGEFGGRFVPETLMPALEELEEAYEKAKNDPEFQAELDYLLKNYVGRPTPLYFAERLSEHLGGAKIYLKREDLNHTGA 88 (397)
T ss_pred CcccCcCCEeCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCceEhHHHHHHcCCCeEEEEECCCCCccc
Confidence 344557777788888889999999999877776544443 23455 69999999999988 5799999999999999
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCC-CC--HHHHHHHHhcCCEEEEECC
Q 019047 134 VKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS-TN--LERRILLRAFGAEIILTDP 210 (347)
Q Consensus 134 fK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~-~~--~~~~~~l~~~GA~V~~~~~ 210 (347)
||+|++..++..|++.|+ +++|+++|+||||.|+|++|+++|++|+||||+. ++ ..++.+|+.+||+|+.++.
T Consensus 89 ~K~r~al~~~l~A~~~Gk----~~vIaetgaGnhG~A~A~~aa~~Gl~c~I~mp~~d~~rq~~nv~~m~~lGA~Vv~v~~ 164 (397)
T PRK04346 89 HKINNVLGQALLAKRMGK----KRIIAETGAGQHGVATATAAALLGLECVIYMGAEDVERQALNVFRMKLLGAEVVPVTS 164 (397)
T ss_pred hHHHHHHHHHHHHHHcCC----CeEEEecCcHHHHHHHHHHHHHcCCcEEEEecCCchhhhhhHHHHHHHCCCEEEEECC
Confidence 999999999999999996 5667779999999999999999999999999985 33 3567889999999999984
Q ss_pred -CCChHHHHHHHHH-HHHcCCCceec-CCCCC----hHHHHHHHHHHHHHHHHhhC----CCCCEEEEecCcchHHHHHH
Q 019047 211 -EKGLRGALDKAEE-IVLNTPNAYMF-QQFDN----MANLKIHFDSTGPEIWEDTL----GCVDIFVAAIGTGGTITGTG 279 (347)
Q Consensus 211 -~~~~~~a~~~a~~-~a~~~~~~~~~-~~~~n----~~~~~~g~~ti~~Ei~~ql~----~~~D~vv~pvG~Gg~~~Gi~ 279 (347)
..+++++++++.+ ++.+..+.+|+ .++.+ +.++..||+|||.||++|+. ..||+||+|||+|||++|++
T Consensus 165 g~~~l~da~~ea~~~~~~~~~~~~y~~gs~~gphp~p~~v~~~q~tig~Ei~eQ~~~~~g~~pD~vVa~VGgGg~~~Gi~ 244 (397)
T PRK04346 165 GSRTLKDAVNEALRDWVTNVEDTHYLIGSVAGPHPYPTMVRDFQSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIF 244 (397)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCeEEeCCcCCCCCchHHHHHhcchHHHHHHHHHHHhhCCCCCEEEEecCccHhHHHHH
Confidence 3467888888876 45553455555 22222 34455699999999999983 37999999999999999999
Q ss_pred HHHHhcCCCCeEEEEcCCCCccccC--------CC-------------------------------CCCCc--hhccccc
Q 019047 280 RFLKMMNKEIKVVGVEPAERSVISG--------EN-------------------------------AGYVP--SILDVQL 318 (347)
Q Consensus 280 ~~~k~~~~~~~vigVep~~~~~~~g--------~~-------------------------------~~~~p--~~l~~~~ 318 (347)
.+|++ .++++||||||.++...++ +. ++..| +.+....
T Consensus 245 ~~f~~-~~~v~iigVE~~G~~~~~~~~~a~l~~g~~g~~~g~~~~~~~~~~g~~~~~~sis~gL~~pgvgp~~~~l~~~~ 323 (397)
T PRK04346 245 HPFID-DESVRLIGVEAAGKGLETGKHAATLTKGRPGVLHGAKTYLLQDEDGQILETHSISAGLDYPGVGPEHAYLKDIG 323 (397)
T ss_pred HHHhh-CCCCeEEEEecCCCccccccccchhhcCCeeeeccccceecccCCCccCCCceeeccccCCCCCHHHHHHHhcC
Confidence 98976 7899999999987532111 10 11111 2233456
Q ss_pred cCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 319 LDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 319 vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.++++.|+|+|+++|+++|++.|||++|+
T Consensus 324 ~~~~v~VtD~eal~a~~~L~~~eGIi~~~ 352 (397)
T PRK04346 324 RAEYVSITDDEALEAFQLLSRLEGIIPAL 352 (397)
T ss_pred CeEEEEECHHHHHHHHHHHHHHcCCEecc
Confidence 77999999999999999999999999764
|
|
| >PLN02569 threonine synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-47 Score=380.29 Aligned_cols=262 Identities=16% Similarity=0.142 Sum_probs=220.7
Q ss_pred HHHHHHHhc-cCCCCchhhhhhhccCCCceeeccccccC-CCC-eEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCC
Q 019047 79 REIEKEEGN-DFHGVNIAEDVTQLIGRTPMVYLNKVTEG-CVG-NVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPG 155 (347)
Q Consensus 79 ~~~~~~~~~-~~~~~~~~~~v~~~~~~TPLv~~~~l~~~-~g~-~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g 155 (347)
..+|+ |++ .+|..+....+++++|.|||+++++|++. +|. +||+|+|++|||||||||++..++..+.+.|.....
T Consensus 108 ~g~wr-y~~~~lP~~~~~~~vsl~eG~TPLv~~~~l~~~~~G~~~l~~K~E~~nPTGSFKDRga~~~vs~a~~~g~~~~~ 186 (484)
T PLN02569 108 SGVWS-KKEWVLPEIDDDDIVSLFEGNSNLFWAERLGKEFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMAKP 186 (484)
T ss_pred CCccc-cccccCCCCCcccceecCCCCCceeEhhhhhHhhcCCccEEEEECCCCCCcCHHHHHHHHHHHHHHHhhhccCC
Confidence 46786 888 67887666679999999999999999988 784 999999999999999999999999999987753211
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCC-CCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceec
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS-TNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMF 234 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~-~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~ 234 (347)
...|+++|+||||.|+|++|+.+|++|+||||++ .+..|+.+|+.+||+|+.+++ +++++++.+.++++++ ++|++
T Consensus 187 ~~~Vv~ASSGN~GaAlAayaa~~Gl~~~I~vP~~~~~~~k~~qi~a~GA~Vi~v~g--~~d~a~~~a~e~~~~~-~~~~~ 263 (484)
T PLN02569 187 VVGVGCASTGDTSAALSAYCAAAGIPSIVFLPADKISIAQLVQPIANGALVLSIDT--DFDGCMRLIREVTAEL-PIYLA 263 (484)
T ss_pred ccEEEEeCCcHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHHc-CCEec
Confidence 2468999999999999999999999999999996 888999999999999999996 5789999999988876 68888
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhhCCC-CCEEEEecCcchHHHHHHHHHHhc------CCCCeEEEEcCCCCcccc----
Q 019047 235 QQFDNMANLKIHFDSTGPEIWEDTLGC-VDIFVAAIGTGGTITGTGRFLKMM------NKEIKVVGVEPAERSVIS---- 303 (347)
Q Consensus 235 ~~~~n~~~~~~g~~ti~~Ei~~ql~~~-~D~vv~pvG~Gg~~~Gi~~~~k~~------~~~~~vigVep~~~~~~~---- 303 (347)
+++ |+.++ .||+|+++||++|++++ ||+||+|+|+||++.|++.+||++ .+.+|||+|||++|+.+.
T Consensus 264 n~~-Np~~i-eG~kT~a~EI~eQl~~~~pD~VvvPvG~Gg~l~Gi~kgfkel~~~G~i~~~Priv~Vqa~g~~pl~~a~~ 341 (484)
T PLN02569 264 NSL-NSLRL-EGQKTAAIEILQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCKELGLVDRLPRLVCAQAANANPLYRAYK 341 (484)
T ss_pred CCC-Ccchh-HhHHHHHHHHHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHHcCCCCCCCeEEEEeeCCCcHHHHHHH
Confidence 988 88887 59999999999999865 999999999999999999999986 356899999999885442
Q ss_pred -CCC-------CC--------CCchhc------cccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 304 -GEN-------AG--------YVPSIL------DVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 304 -g~~-------~~--------~~p~~l------~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
|.. .. ..|..+ .++.-+.++.|+|+|+.+|+++ ++++||++||
T Consensus 342 ~G~~~~~~~~~~~T~A~gi~i~~P~~~~~~l~al~~s~g~~v~VsDeEi~~a~~~-a~~~Gi~vep 406 (484)
T PLN02569 342 SGWEEFKPVKANPTFASAIQIGDPVSIDRAVYALKESNGIVEEATEEELMDAQAE-ADKTGMFLCP 406 (484)
T ss_pred cCCCccccCCCCCccchhhccCCCccHHHHHHHHHHhCCEEEEECHHHHHHHHHH-HHHCCcEECc
Confidence 211 00 012211 1222345799999999999999 8899999997
|
|
| >PRK13028 tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-46 Score=368.06 Aligned_cols=283 Identities=20% Similarity=0.207 Sum_probs=226.2
Q ss_pred ccccCCCCCCCCcccchhhHHHHHHHhccCCCCchhhhh----hhccC-CCceeeccccccCC-CCeEEEEeCCCCCCCc
Q 019047 60 AKAGAAASSSSSSLYATSTREIEKEEGNDFHGVNIAEDV----TQLIG-RTPMVYLNKVTEGC-VGNVAAKLESMEPCRS 133 (347)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v----~~~~~-~TPLv~~~~l~~~~-g~~Iy~K~E~~~ptGS 133 (347)
.+...+.....|+...+...||.+.|......++..+++ ..+++ +|||+++++|++.+ |++||+|+|++|||||
T Consensus 13 ~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~g~pTPL~~~~~Ls~~~Gg~~IylK~EdlnptGS 92 (402)
T PRK13028 13 GFFGEYGGQFVPPELKPALDELEAAYEEIKKDPDFIAELRYLLKHYVGRPTPLYHAKRLSEELGGAQIYLKREDLNHTGA 92 (402)
T ss_pred CCcCCcCCEeCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCCCeeehHHhHhhcCCCeEEEEECCCCCCcc
Confidence 344557777788888889999999999887776655554 23454 79999999999988 5799999999999999
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCH---HHHHHHHhcCCEEEEECC
Q 019047 134 VKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL---ERRILLRAFGAEIILTDP 210 (347)
Q Consensus 134 fK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~---~~~~~l~~~GA~V~~~~~ 210 (347)
||+|++..++..+++.|+ +++|+++|+||||+|+|++|+.+|++|+||||+.... .++.+|+.+||+|+.++.
T Consensus 93 ~K~r~al~~~l~A~~~G~----~~vI~etgsGnhG~A~A~aaa~~Gl~~~I~m~~~d~~~q~~nv~~mr~~GAeVi~v~~ 168 (402)
T PRK13028 93 HKINNCLGQALLAKRMGK----KRLIAETGAGQHGVATATAAALFGLECEIYMGEVDIERQHPNVFRMKLLGAEVVPVTR 168 (402)
T ss_pred hHHHHHHHHHHHHHHcCC----CeEEEecCcHHHHHHHHHHHHHcCCCEEEEECCCcchhhHHHHHHHHHcCCEEEEEcC
Confidence 999999999999999996 4567789999999999999999999999999985333 567799999999999984
Q ss_pred -CCChHHHHHHHHH-HHHcCCCceecC-CCC----ChHHHHHHHHHHHHHHHHhhC----CCCCEEEEecCcchHHHHHH
Q 019047 211 -EKGLRGALDKAEE-IVLNTPNAYMFQ-QFD----NMANLKIHFDSTGPEIWEDTL----GCVDIFVAAIGTGGTITGTG 279 (347)
Q Consensus 211 -~~~~~~a~~~a~~-~a~~~~~~~~~~-~~~----n~~~~~~g~~ti~~Ei~~ql~----~~~D~vv~pvG~Gg~~~Gi~ 279 (347)
..++++++++|.+ ++++.++.+|+. ++. .+.++..||+|++.||.+|+. ..||+||+|||+|||++|++
T Consensus 169 g~~~~~~a~~~a~~~~~~~~~~~~y~~~s~~gp~p~p~~v~~~q~tig~Ei~~Q~~~~~g~~pD~vV~~VGgGg~~~Gi~ 248 (402)
T PRK13028 169 GGRTLKEAVDSAFEDYLKDPDNTHYAIGSVVGPHPFPMMVRDFQSVIGEEAREQFLEMTGRLPDAVVACVGGGSNAIGLF 248 (402)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCcEEEecCcCCCCCcHHHHHHHhHHHHHHHHHHHHHhhCCCCCEEEEEcCchHHHHHHH
Confidence 3468899999865 455544566662 211 134555699999999999973 36999999999999999999
Q ss_pred HHHHhcCCCCeEEEEcCCC--------CccccCCCC-------------------------------CCCch--hccccc
Q 019047 280 RFLKMMNKEIKVVGVEPAE--------RSVISGENA-------------------------------GYVPS--ILDVQL 318 (347)
Q Consensus 280 ~~~k~~~~~~~vigVep~~--------~~~~~g~~~-------------------------------~~~p~--~l~~~~ 318 (347)
.+|++ .++++||||||.+ ++.+..+.+ +..|. .+....
T Consensus 249 ~~f~~-~~~v~iigVE~~G~~~~~~~~aa~l~~g~~g~~~g~~~~~l~~~~g~~~~~~sia~gl~~~~vgp~~~~l~~~~ 327 (402)
T PRK13028 249 SAFLD-DESVRLVGVEPAGRGLDLGEHAATLTLGKPGVIHGFKSYVLQDEDGEPAPVHSIAAGLDYPGVGPEHAYLKDIG 327 (402)
T ss_pred HHHHh-CCCceEEEEecCCCCcccccccccccCCCcceecccceeeccccCCCcCCccceeccccCCCCCHHHHHHHHhc
Confidence 99986 4889999999988 433322111 11111 123345
Q ss_pred cCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 319 LDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 319 vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.|+++.|+|+|+++|+++|++.|||++||
T Consensus 328 ~~~~v~VtD~eal~a~~~La~~eGIi~~~ 356 (402)
T PRK13028 328 RVEYVTATDEEALDAFFLLSRTEGIIPAL 356 (402)
T ss_pred CcEEEEECHHHHHHHHHHHHHhcCCeecc
Confidence 68899999999999999999999999885
|
|
| >PRK08206 diaminopropionate ammonia-lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=372.00 Aligned_cols=249 Identities=20% Similarity=0.173 Sum_probs=209.9
Q ss_pred hhhh--hhccCCCceeeccccccCCC-CeEEEEeCCC-CCCCchhHHHHHHHHHHHHH--cCCC----------------
Q 019047 95 AEDV--TQLIGRTPMVYLNKVTEGCV-GNVAAKLESM-EPCRSVKDRIGYSMITDAEE--SGDI---------------- 152 (347)
Q Consensus 95 ~~~v--~~~~~~TPLv~~~~l~~~~g-~~Iy~K~E~~-~ptGSfK~Rga~~~~~~a~~--~G~~---------------- 152 (347)
.+++ ...+++|||+++++|++.+| ++||+|+|++ |||||||+||+.+.+.++.. .+.-
T Consensus 33 ~~~~~~~~~~~~TPL~~~~~l~~~~G~~~v~~K~E~~q~ptgSFK~RG~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~ 112 (399)
T PRK08206 33 RAFHQSFPGYAPTPLVALPDLAAELGVGSILVKDESYRFGLNAFKALGGAYAVARLLAEKLGLDISELSFEELTSGEVRE 112 (399)
T ss_pred HHHHhcCCCCCCCCCcchHHHHHHhCCCcEEEecccCcCCCCChHHhhHHHHHHHHHHHHhCCCcccCCHHHhhhhHHHH
Confidence 3555 45788999999999999999 5999999997 59999999999999888763 2220
Q ss_pred -CCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCc
Q 019047 153 -TPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNA 231 (347)
Q Consensus 153 -~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~ 231 (347)
.++ .+|+++|+||||+|+|++|+.+|++|+||||+++++.|+..|+.+||+|+.+++ ++++++..+.+++++. ++
T Consensus 113 ~~~~-~~vv~aSsGN~g~alA~~a~~~G~~~~Ivvp~~~~~~k~~~i~~~GA~Vi~v~~--~~~~~~~~a~~~~~~~-g~ 188 (399)
T PRK08206 113 KLGD-ITFATATDGNHGRGVAWAAQQLGQKAVIYMPKGSSEERVDAIRALGAECIITDG--NYDDSVRLAAQEAQEN-GW 188 (399)
T ss_pred hccC-CEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHHc-CC
Confidence 011 258999999999999999999999999999999999999999999999999996 4788999999988876 78
Q ss_pred eecC-----CCCC-hHHHHHHHHHHHHHHHHhhCC---CCCEEEEecCcchHHHHHHHHHHhcC--CCCeEEEEcCCCCc
Q 019047 232 YMFQ-----QFDN-MANLKIHFDSTGPEIWEDTLG---CVDIFVAAIGTGGTITGTGRFLKMMN--KEIKVVGVEPAERS 300 (347)
Q Consensus 232 ~~~~-----~~~n-~~~~~~g~~ti~~Ei~~ql~~---~~D~vv~pvG~Gg~~~Gi~~~~k~~~--~~~~vigVep~~~~ 300 (347)
++++ +|+| +.++..||+|+++||++|+++ .||+||+|+|+||+++|++.++|+.+ +.++||+|||++++
T Consensus 189 ~~v~~~~~~~~~~~~~~~~~G~~t~a~EI~eQl~~~~~~pD~vvvpvG~GG~~aGi~~~~k~~~~~~~~kii~Vep~gs~ 268 (399)
T PRK08206 189 VVVQDTAWEGYEEIPTWIMQGYGTMADEAVEQLKEMGVPPTHVFLQAGVGSLAGAVLGYFAEVYGEQRPHFVVVEPDQAD 268 (399)
T ss_pred EEecCccccCcccccHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCccHHHHHHHHHHHHHcCCCCCEEEEECCCCCc
Confidence 8876 6876 556667999999999999975 69999999999999999999999884 47999999999874
Q ss_pred cc-----cCCC------------------CCCCchhccccccCeEEEeCHHHHHHHHHHHHH----hcCccccC
Q 019047 301 VI-----SGEN------------------AGYVPSILDVQLLDEVIKVTNDEAVNMARRLAL----EEGLLVMC 347 (347)
Q Consensus 301 ~~-----~g~~------------------~~~~p~~l~~~~vd~~v~Vsd~ea~~a~~~La~----~eGI~~G~ 347 (347)
.+ .|.. ++..++.+.++.+|+++.|+|+|+++++++|++ ++||++||
T Consensus 269 ~l~~s~~~g~~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~gi~vep 342 (399)
T PRK08206 269 CLYQSAVDGKPVAVTGDMDTIMAGLACGEPNPLAWEILRNCADAFISCPDEVAALGMRILANPLGGDPPIVSGE 342 (399)
T ss_pred hHHHHHHcCCcEEeCCCCCceeccCCCCCcCHHHHHHHHHhCCEEEEECHHHHHHHHHHHhcccCCCCCeeecc
Confidence 43 2210 111334455678999999999999999999996 78999987
|
|
| >PRK05638 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=376.33 Aligned_cols=253 Identities=20% Similarity=0.240 Sum_probs=215.5
Q ss_pred HHHHHHHhccCCCCchhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeE
Q 019047 79 REIEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTV 158 (347)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~ 158 (347)
..+|+ |++++|..+ ..+++++++|||+++ ++++.+|.+||+|+|++|||||||||++.+++.+|++.|. +.
T Consensus 44 ~~~wr-y~~~lp~~~--~~v~l~~G~TPLv~~-~~~~~~g~~l~~K~E~~nPtGSfKdR~a~~~i~~a~~~g~-----~~ 114 (442)
T PRK05638 44 PGVWR-YKELLPQVK--KIISLGEGGTPLIRA-RISEKLGENVYIKDETRNPTGSFRDRLATVAVSYGLPYAA-----NG 114 (442)
T ss_pred CChhh-hhhhCCCcC--CccccCCCCCcEEcc-cchHHhCCeEEEEeCCCCCCCChHHHHHHHHHHHHHHcCC-----CE
Confidence 35777 889999865 558899999999998 4777778899999999999999999999999999999875 56
Q ss_pred EEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCC
Q 019047 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFD 238 (347)
Q Consensus 159 vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~ 238 (347)
|+++|+||||.|+|++|+.+|++|+||||++++..|+.+|+.|||+|+.+++ +++++++.+.+++++. ++|+++++.
T Consensus 115 vv~aSsGN~g~alA~~aa~~G~~~~i~vp~~~~~~k~~~~~~~GA~vi~v~~--~~~~~~~~a~~~~~~~-~~~~~~~~~ 191 (442)
T PRK05638 115 FIVASDGNAAASVAAYSARAGKEAFVVVPRKVDKGKLIQMIAFGAKIIRYGE--SVDEAIEYAEELARLN-GLYNVTPEY 191 (442)
T ss_pred EEEeCCChHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHhcCcEEEEECC--CHHHHHHHHHHHHHhC-CeEecCCCC
Confidence 8999999999999999999999999999999999999999999999999985 4689999999988875 799999999
Q ss_pred ChHHHHHHHHHHHHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCC------CCeEEEEcCCCCcccc----CCC--
Q 019047 239 NMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNK------EIKVVGVEPAERSVIS----GEN-- 306 (347)
Q Consensus 239 n~~~~~~g~~ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~------~~~vigVep~~~~~~~----g~~-- 306 (347)
|+.++ .||+|+++||++|++ ||+||+|+|+||+++|++.+|+++.+ .++||+|||++++.+. +..
T Consensus 192 np~~~-eG~~t~a~Ei~eq~~--pD~vv~pvG~Gg~~~Gi~~gfkel~~~g~i~~~prii~Vq~~~~~p~~~~~~~~~~~ 268 (442)
T PRK05638 192 NIIGL-EGQKTIAFELWEEIN--PTHVIVPTGSGSYLYSIYKGFKELLEIGVIEEIPKLIAVQTERCNPIASEILGNKTK 268 (442)
T ss_pred ChhHh-hhHHHHHHHHHHHHC--cCEEEEeCCchHHHHHHHHHHHHHHhCCcccCCCeEEEEecCCCCHHHHHHhcCCCC
Confidence 99987 599999999999995 99999999999999999999999754 4799999998774432 111
Q ss_pred -CC--------CCch------hccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 307 -AG--------YVPS------ILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 307 -~~--------~~p~------~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.. ..|. .+.++..+.++.|+|+++.++.+.|+ ++||++||
T Consensus 269 ~~~t~a~gl~~~~p~~~~~~~~~i~~~~g~~~~v~d~~i~~a~~~l~-~eGi~~ep 323 (442)
T PRK05638 269 CNETKALGLYVKNPVMKEYVSEAIKESGGTAVVVNEEEIMAGEKLLA-KEGIFAEL 323 (442)
T ss_pred CCCceeeeEeeCCCCCHHHHHHHHHHhCCEEEEECHHHHHHHHHHHH-hcCceecc
Confidence 00 0111 11233456789999999888877776 68999997
|
|
| >PRK06450 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-46 Score=362.79 Aligned_cols=237 Identities=22% Similarity=0.254 Sum_probs=198.7
Q ss_pred hccCCCCchhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCC
Q 019047 86 GNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTG 165 (347)
Q Consensus 86 ~~~~~~~~~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assG 165 (347)
+..+|... ..+++++|+|||++.+ +||+|+|++|||||||||++..++.++++.|. +.|+++|+|
T Consensus 42 ~~~lp~~~--~~vslgeG~TPLv~~~--------~l~~K~E~~nPTGSfKDRga~~~i~~a~~~g~-----~~vv~aSsG 106 (338)
T PRK06450 42 RKNFPYIK--HFISLGEGRTPLIKKG--------NIWFKLDFLNPTGSYKDRGSVTLISYLAEKGI-----KQISEDSSG 106 (338)
T ss_pred HhhCCCCc--CCCCCCCCCCCceecC--------CEEEEecCCCCcCCCHHHHHHHHHHHHHHcCC-----CEEEEECCc
Confidence 35677654 3689999999999864 69999999999999999999999999999885 569999999
Q ss_pred hhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHH
Q 019047 166 NTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKI 245 (347)
Q Consensus 166 N~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~ 245 (347)
|||.|+|++|+.+|++|+||||+++++.|+.+|+.|||+|+.++++ ++++.+ ++++. +.+|++++.|+.++ .
T Consensus 107 N~g~slA~~aa~~G~~~~i~vP~~~~~~k~~~i~~~GA~vi~v~~~--~~~~~~----~a~~~-g~~~~~~~~np~~i-e 178 (338)
T PRK06450 107 NAGASIAAYGAAAGIEVKIFVPETASGGKLKQIESYGAEVVRVRGS--REDVAK----AAENS-GYYYASHVLQPQFR-D 178 (338)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC--HHHHHH----HHHhc-CeEeccCCCCccHH-H
Confidence 9999999999999999999999999999999999999999999864 444433 35554 67888888899987 5
Q ss_pred HHHHHHHHHHHhhCC-CCCEEEEecCcchHHHHHHHHHHhcCC------CCeEEEEcCCCCcccc----CCCC------C
Q 019047 246 HFDSTGPEIWEDTLG-CVDIFVAAIGTGGTITGTGRFLKMMNK------EIKVVGVEPAERSVIS----GENA------G 308 (347)
Q Consensus 246 g~~ti~~Ei~~ql~~-~~D~vv~pvG~Gg~~~Gi~~~~k~~~~------~~~vigVep~~~~~~~----g~~~------~ 308 (347)
||+||++||++|+++ .||+||+|+|+|++++|++++|+++.+ .+|||+|||++++.+. |... .
T Consensus 179 G~kTia~EI~eql~~~~pD~vvvpvG~Ggll~Gi~~g~~el~~~G~i~~~prii~Vq~~g~~p~~~a~~~~~~~~~~~~~ 258 (338)
T PRK06450 179 GIRTLAYEIAKDLDWKIPNYVFIPVSAGTLLLGVYSGFKHLLDSGVISEMPKIVAVQTEQVSPLCAKFKGISYTPPDKVT 258 (338)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCccCCCeEEEEeeCCCCHHHHHhcCCCCCCCCCCC
Confidence 999999999999974 699999999999999999999998753 4899999999875432 2110 0
Q ss_pred --------CCchh------ccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 309 --------YVPSI------LDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 309 --------~~p~~------l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
..|.. ..++. ++++.|+|+|+++|+++|++ +||+++|
T Consensus 259 tia~~l~~~~p~~~~~~~~~i~~~-g~~v~V~d~ei~~a~~~La~-~Gi~vep 309 (338)
T PRK06450 259 SIADALVSTRPFLLDYMVKALSEY-GECIVVSDNEIVEAWKELAK-KGLLVEY 309 (338)
T ss_pred cceeeeecCCCCCHHHHHHHHHhc-CcEEEECHHHHHHHHHHHHH-cCCEECh
Confidence 01211 12233 78999999999999999996 7999987
|
|
| >KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-46 Score=355.56 Aligned_cols=245 Identities=23% Similarity=0.277 Sum_probs=221.8
Q ss_pred hhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHH
Q 019047 95 AEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFV 174 (347)
Q Consensus 95 ~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~a 174 (347)
...++..+-.|||.+.-.|++.+|.++|+|+|++||+||||.||+.+++.+.-++++ +..|+++|+||||.|+|++
T Consensus 57 ~~~i~~~~~~TPl~~s~~lS~~~g~~vyLK~E~lQpsgSFK~RGa~~~~~kla~~~~----~~gViasSaGNha~a~Aya 132 (457)
T KOG1250|consen 57 HFKIYPVIVETPLLKSVALSKKAGMPVYLKREDLQPSGSFKIRGAGNALQKLAKQQK----KAGVIASSAGNHAQAAAYA 132 (457)
T ss_pred hhccccceecccchhhhhhhhhcCCceEEEehhcccccceehhhHHHHHHHHHHhhh----cCceEEecCccHHHHHHHH
Confidence 355777888999999988999999999999999999999999999999998887775 5679999999999999999
Q ss_pred HHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHH
Q 019047 175 AAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEI 254 (347)
Q Consensus 175 a~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei 254 (347)
|+.+|++|+|+||..++..|.+.++.+||+|++.+. ++++|..+|.++++++ ++.|+++||+|+.| .|++||+.||
T Consensus 133 a~~LgipaTIVmP~~tp~~kiq~~~nlGA~Vil~G~--~~deAk~~a~~lAke~-gl~yI~pfDhP~I~-aGqgTig~EI 208 (457)
T KOG1250|consen 133 ARKLGIPATIVMPVATPLMKIQRCRNLGATVILSGE--DWDEAKAFAKRLAKEN-GLTYIPPFDHPDIW-AGQGTIGLEI 208 (457)
T ss_pred HHhcCCceEEEecCCChHHHHHHHhccCCEEEEecc--cHHHHHHHHHHHHHhc-CceecCCCCCchhh-cCcchHHHHH
Confidence 999999999999999999999999999999999885 4789999999999997 89999999999998 6999999999
Q ss_pred HHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccc-----cCC-----------------CCCCCch
Q 019047 255 WEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVI-----SGE-----------------NAGYVPS 312 (347)
Q Consensus 255 ~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~-----~g~-----------------~~~~~p~ 312 (347)
.+|+...++.|+|||||||+++||+.++|+..|+++|||||+.+|..+ .|. ..+..++
T Consensus 209 l~ql~~~~~AI~vpVGGGGLiaGIat~vk~~~p~vkIIGVEt~~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~tf 288 (457)
T KOG1250|consen 209 LEQLKEPDGAIVVPVGGGGLIAGIATGVKRVGPHVKIIGVETEGAHSFNASLKAGKPVTLPKITSLADGLAVKTVGENTF 288 (457)
T ss_pred HHhhcCCCCeEEEecCCchhHHHHHHHHHHhCCCCceEEEeecCcHHHHHHHhcCCeeecccccchhcccccchhhHHHH
Confidence 999966666999999999999999999999999999999999998433 231 1244455
Q ss_pred hccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 313 ILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 313 ~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.+.+..+|+++.|+|+|+..|+++|.++|..++.|
T Consensus 289 ~~a~~~~d~vvvV~~~ei~aaI~~l~edek~vvEp 323 (457)
T KOG1250|consen 289 ELAQKLVDRVVVVEDDEIAAAILRLFEDEKMVVEP 323 (457)
T ss_pred HHHHhcCceEEEeccHHHHHHHHHHHHhhhheecc
Confidence 66788999999999999999999999999988876
|
|
| >PLN02618 tryptophan synthase, beta chain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-45 Score=361.31 Aligned_cols=281 Identities=22% Similarity=0.266 Sum_probs=223.4
Q ss_pred ccccCCCCCCCCcccchhhHHHHHHHhccCCCCchhhh----hhhccC-CCceeeccccccCC------CCeEEEEeCCC
Q 019047 60 AKAGAAASSSSSSLYATSTREIEKEEGNDFHGVNIAED----VTQLIG-RTPMVYLNKVTEGC------VGNVAAKLESM 128 (347)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----v~~~~~-~TPLv~~~~l~~~~------g~~Iy~K~E~~ 128 (347)
.+...+.....|+...+...||.+.|......++...+ +..++| +|||+++++|++.+ |++||+|+|++
T Consensus 17 ~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~vGr~TPL~~~~~Ls~~~g~~~~~g~~IylK~E~l 96 (410)
T PLN02618 17 GRFGKFGGKYVPETLMTALSELEAAFNALATDPEFQEELAGILKDYVGRETPLYFAERLTEHYKRADGEGPEIYLKREDL 96 (410)
T ss_pred CcccCcCCEeCCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHhcCCCCceeEhhhHHHHhccccCCCCEEEEEeCCC
Confidence 34456777888888888999999999887777654333 455674 89999999999876 47999999999
Q ss_pred CCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCC---CHHHHHHHHhcCCEE
Q 019047 129 EPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST---NLERRILLRAFGAEI 205 (347)
Q Consensus 129 ~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~---~~~~~~~l~~~GA~V 205 (347)
|||||||+|++..++..|++.|+ +.+|+++|+||||.|+|++|+.+|++|+||||+.. ...++.+|+.+||+|
T Consensus 97 nptGS~K~R~a~~~~l~A~~~g~----~~vIaesgaGNhG~AlA~aaa~~Gl~~~I~m~~~~~~~~~~nv~~mr~lGA~V 172 (410)
T PLN02618 97 NHTGAHKINNAVAQALLAKRLGK----KRIIAETGAGQHGVATATVCARFGLECIVYMGAQDMERQALNVFRMRLLGAEV 172 (410)
T ss_pred CCccchHHHHHHHHHHHHHHcCC----CEEEEEcCcHHHHHHHHHHHHHcCCcEEEEEcCCchhhhhhhHHHHHHCCCEE
Confidence 99999999999999999999886 45666778999999999999999999999999852 345677999999999
Q ss_pred EEECC-CCChHHHHHHHH-HHHHcCCCceec-------CCCCChHHHHHHHHHHHHHHHHhh----CCCCCEEEEecCcc
Q 019047 206 ILTDP-EKGLRGALDKAE-EIVLNTPNAYMF-------QQFDNMANLKIHFDSTGPEIWEDT----LGCVDIFVAAIGTG 272 (347)
Q Consensus 206 ~~~~~-~~~~~~a~~~a~-~~a~~~~~~~~~-------~~~~n~~~~~~g~~ti~~Ei~~ql----~~~~D~vv~pvG~G 272 (347)
+.++. +.++++++.++. +++++..+.+|+ ++| +..+..|++|||.||.+|+ +..||+||+|||+|
T Consensus 173 i~v~~g~~~~~dA~~ea~~~~~~~~~~~~yi~gs~~gp~P~--~~~v~~~q~tig~Ei~~Q~~~~~g~~pD~VV~~VGgG 250 (410)
T PLN02618 173 RPVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPY--PMMVRDFHSVIGKETRRQAMEKWGGKPDVLVACVGGG 250 (410)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhccCCCEEEecCcCCCCCC--HHHHHHhhHHHHHHHHHHHHHHhCCCCCEEEEEeCch
Confidence 99964 457888886654 566654456666 333 2333469999999998776 34799999999999
Q ss_pred hHHHHHHHHHHhcCCCCeEEEEcCCCCccc--------cCCCC-------------------------------CCCch-
Q 019047 273 GTITGTGRFLKMMNKEIKVVGVEPAERSVI--------SGENA-------------------------------GYVPS- 312 (347)
Q Consensus 273 g~~~Gi~~~~k~~~~~~~vigVep~~~~~~--------~g~~~-------------------------------~~~p~- 312 (347)
||++|++.+|+. +++++||||||.++... ..+.+ +..|.
T Consensus 251 g~~~Gi~~~f~~-~~~v~ligVEa~G~~~~~~~~~a~l~~g~~gv~~g~~~~~l~~~~g~~~~~~sia~gl~~pgvgp~~ 329 (410)
T PLN02618 251 SNAMGLFHEFID-DEDVRLIGVEAAGFGLDSGKHAATLTKGEVGVLHGAMSYLLQDEDGQIIEPHSISAGLDYPGVGPEH 329 (410)
T ss_pred HHHHHHHHHHHh-CCCceEEEEEeCCCcccccccccchhcCCcceeccccccccccccCCCCCCcchhhhhcCCCCcHHH
Confidence 999999999975 68999999999986221 11111 11111
Q ss_pred -hccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 313 -ILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 313 -~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.+....+|+++.|+|+|+++|+++|++.|||++|+
T Consensus 330 ~~l~~~~~~~~v~VtD~Eal~a~~~La~~eGIi~~~ 365 (410)
T PLN02618 330 SFLKDTGRAEYYSVTDEEALEAFQRLSRLEGIIPAL 365 (410)
T ss_pred HHHHhhcCcEEEEECHHHHHHHHHHHHHHcCceEch
Confidence 12233678999999999999999999999999885
|
|
| >cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-45 Score=338.35 Aligned_cols=214 Identities=40% Similarity=0.589 Sum_probs=201.3
Q ss_pred CceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEE
Q 019047 105 TPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIV 184 (347)
Q Consensus 105 TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I 184 (347)
|||+++++|++..+.+||+|+|+.|||||||||++.+++..+++.|.+ ++ ..|+++|+||||.|+|++|+.+|++|+|
T Consensus 1 TPl~~~~~l~~~~~~~l~~K~e~~~ptgS~K~R~a~~~l~~a~~~g~~-~~-~~vv~~ssGN~g~alA~~a~~~g~~~~v 78 (244)
T cd00640 1 TPLVRLKRLSKLGGANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKL-PK-GVIIESTGGNTGIALAAAAARLGLKCTI 78 (244)
T ss_pred CCeeEccccccccCCEEEEEecccCCcCCcHHHHHHHHHHHHHHcCCC-CC-CEEEEeCCcHHHHHHHHHHHHcCCCEEE
Confidence 899999999987778999999999999999999999999999999865 33 5689999999999999999999999999
Q ss_pred EeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHHHHhhCC-CCC
Q 019047 185 TMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLG-CVD 263 (347)
Q Consensus 185 ~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei~~ql~~-~~D 263 (347)
|||.+.+..++++|+.+||+|+.++++ ++++...+.+++++.++++|+++|.|+.++ .||.++++||.+|+.+ .||
T Consensus 79 ~~p~~~~~~~~~~~~~~Ga~v~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~-~g~~~~~~Ei~~q~~~~~~d 155 (244)
T cd00640 79 VMPEGASPEKVAQMRALGAEVVLVPGD--FDDAIALAKELAEEDPGAYYVNQFDNPANI-AGQGTIGLEILEQLGGQKPD 155 (244)
T ss_pred EECCCCCHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHHhCCCCEecCCCCCHHHH-HHHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999999965 688999999999986689999999999998 5899999999999976 699
Q ss_pred EEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccccCCCCCCCchhccccccCeEEEeCHHHHHHHHHHHHHhcCc
Q 019047 264 IFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGENAGYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGL 343 (347)
Q Consensus 264 ~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~g~~~~~~p~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI 343 (347)
+||+|+|+||+++|++.+|++.++.++||+||| +++.|+|+|+++++++|++.|||
T Consensus 156 ~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v~~------------------------~~~~v~d~~~~~a~~~l~~~~gi 211 (244)
T cd00640 156 AVVVPVGGGGNIAGIARALKELLPNVKVIGVEP------------------------EVVTVSDEEALEAIRLLAREEGI 211 (244)
T ss_pred EEEEecCccHHHHHHHHHHHHhCCCCEEEEEee------------------------eEEEECHHHHHHHHHHHHHHcCc
Confidence 999999999999999999999999999999999 89999999999999999999999
Q ss_pred cccC
Q 019047 344 LVMC 347 (347)
Q Consensus 344 ~~G~ 347 (347)
++||
T Consensus 212 ~~~p 215 (244)
T cd00640 212 LVEP 215 (244)
T ss_pred eECH
Confidence 9997
|
This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy |
| >COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-46 Score=346.63 Aligned_cols=299 Identities=19% Similarity=0.190 Sum_probs=249.2
Q ss_pred Ccccccccccccccc------cccccCCCCCCCCcccchhhHHHHHHHhc---cCCCCchhhhhhhcc-CCCceeecccc
Q 019047 44 NGALATRRRILPIVA------SAKAGAAASSSSSSLYATSTREIEKEEGN---DFHGVNIAEDVTQLI-GRTPMVYLNKV 113 (347)
Q Consensus 44 ~~~~~~r~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~-~~TPLv~~~~l 113 (347)
...|+.||++...|. +.-|.+.++.....+...++.++++|+.. |+++++...+++..| +||||+++++|
T Consensus 8 ~~eiPk~WYNIlpDLPepLppP~dP~t~~~~~~e~L~~ifp~~lieqE~s~eR~i~IP~Ev~e~Y~~~gRPTPL~RA~~L 87 (432)
T COG1350 8 EDEIPKRWYNILPDLPEPLPPPLDPETGEPIRPELLKKIFPKKLIEQEFSGERYIKIPEEVREAYLQIGRPTPLIRAKNL 87 (432)
T ss_pred cccccHHHHhcccCCCCCCCCCCCccccCCCCHHHHHHhccHHHHHHHhhhhhcccCcHHHHHHHHHhCCCCchhhhhhH
Confidence 456888999985444 22222344444455566799999999844 899999999999999 58999999999
Q ss_pred ccCCC--CeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCC---
Q 019047 114 TEGCV--GNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA--- 188 (347)
Q Consensus 114 ~~~~g--~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~--- 188 (347)
++.+| ++||+|+|+..||||||++.|..++++++..|. ++.++++++|+||.||+++|+.||++|+|||.+
T Consensus 88 E~~L~tparIYyK~Eg~tptGSHKiNTAlAqaYyak~eg~----~rl~TETGAGQWGsAlslA~alf~lk~~V~Mvr~Sy 163 (432)
T COG1350 88 EEALGTPARIYYKYEGVTPTGSHKINTALAQAYYAKKEGA----KRLTTETGAGQWGSALSLAAALFGLKATVFMVRVSY 163 (432)
T ss_pred HHHhCCCcEEEEEecccCCCCCCCcchHHHHHHHHHhcCc----eeeecccCCchHHHHHHHHHHHhCceeEEEEEehhh
Confidence 99665 799999999999999999999999999999998 788999999999999999999999999999997
Q ss_pred CCCHHHHHHHHhcCCEEEEECCCCChHH----------------HHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHH
Q 019047 189 STNLERRILLRAFGAEIILTDPEKGLRG----------------ALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGP 252 (347)
Q Consensus 189 ~~~~~~~~~l~~~GA~V~~~~~~~~~~~----------------a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~ 252 (347)
.+++.++.+|+.|||+|+.++++.+..+ |+++|.|.+-++++..|..+..-++++ .||.+||+
T Consensus 164 ~qKpyRk~lM~~yGa~V~pSPS~~Te~Grk~l~e~p~hPGSLGIAISEAiE~al~~~~~kY~lGSVlnhvl-lhQTViGl 242 (432)
T COG1350 164 YQKPYRKYLMELYGAEVVPSPSELTEFGRKILKEDPDHPGSLGIAISEAIEYALKNENTKYSLGSVLNHVL-LHQTVIGL 242 (432)
T ss_pred hcchHHHHHHHHhCCeecCCCcchhHHHHHHHhcCCCCCchhHHHHHHHHHHHHhCCCceecchhHHHHHH-HHHHHHhH
Confidence 5789999999999999999987654322 899999999988888999888888887 59999999
Q ss_pred HHHHhh---CCCCCEEEEecCcchHHHHHHHHHHhc----CCCCeEEEEcCCCCccccCC--------------------
Q 019047 253 EIWEDT---LGCVDIFVAAIGTGGTITGTGRFLKMM----NKEIKVVGVEPAERSVISGE-------------------- 305 (347)
Q Consensus 253 Ei~~ql---~~~~D~vv~pvG~Gg~~~Gi~~~~k~~----~~~~~vigVep~~~~~~~g~-------------------- 305 (347)
|..+|+ +..||++|.|||+|+|++|+...|-.. ....++|+|||..|+.++.+
T Consensus 243 EakkQle~~~e~PDv~igcvGGGSNfag~~yPfi~d~l~g~~~~~fiAvep~a~P~lT~GeY~YD~gDtagltPllKMyT 322 (432)
T COG1350 243 EAKKQLEQAGEDPDVIIGCVGGGSNFAGLTYPFIGDKLRGKKETRFIAVEPKACPKLTKGEYRYDFGDTAGLTPLLKMYT 322 (432)
T ss_pred HHHHHHHhcCCCCCEEEEeccCCCccccccchhhhhhhcCCceeEEEEeCCccCCccccceeeccCCchhccchhhhhhc
Confidence 997776 458999999999999999999755432 22389999999999888752
Q ss_pred -CCCCCchhc-----------------cccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 306 -NAGYVPSIL-----------------DVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 306 -~~~~~p~~l-----------------~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
+.+++|..+ ...++-+++.++++|+++|++.|++.|||+--|
T Consensus 323 lGhd~vpPpihAgGLRYHG~aPtls~L~~~Giv~a~ay~Q~Evfeaa~lFa~~EGiVPAP 382 (432)
T COG1350 323 LGHDYVPPPIHAGGLRYHGVAPTLSLLVKEGIVEARAYDQEEVFEAAVLFARTEGIVPAP 382 (432)
T ss_pred cCCCccCCCcccccccccCcChHHHHHHHcCcccceecChHHHHHHHHHHHHhcCCccCC
Confidence 224444432 345566899999999999999999999998654
|
|
| >PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-45 Score=379.06 Aligned_cols=284 Identities=19% Similarity=0.215 Sum_probs=228.4
Q ss_pred cccccCCCCCCCCcccchhhHHHHHHHhccCCCCchhhhh----hhccC-CCceeeccccccC----CC--CeEEEEeCC
Q 019047 59 SAKAGAAASSSSSSLYATSTREIEKEEGNDFHGVNIAEDV----TQLIG-RTPMVYLNKVTEG----CV--GNVAAKLES 127 (347)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v----~~~~~-~TPLv~~~~l~~~----~g--~~Iy~K~E~ 127 (347)
..+...+.....|+...+...||.+.|......+....++ ..++| +|||+++++|++. +| ++||+|+|+
T Consensus 276 ~~~~g~~gg~~~pe~l~~~~~~l~~~~~~~~~~~~f~~e~~~~~~~~iGrpTPL~~~~~Ls~~l~~~~G~g~~IylK~E~ 355 (695)
T PRK13802 276 GPYWGQFGGRYVPEALITALDELERVYTQAKADPEFHKELATLNQRYVGRPSPLTEAPRFAERVKEKTGLDARVFLKRED 355 (695)
T ss_pred CCCcCCcCCEeCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCCceeEchhhhhhhHhhcCCCceEEEEEcc
Confidence 3455668888888888889999999999877776544443 34677 9999999998753 44 799999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCC---CCHHHHHHHHhcCCE
Q 019047 128 MEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS---TNLERRILLRAFGAE 204 (347)
Q Consensus 128 ~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~---~~~~~~~~l~~~GA~ 204 (347)
+|||||||+|++.+++..+++.|+ .++|+++|+||||+|+|++|+.+|++|+||||+. .+..|+.+|+.|||+
T Consensus 356 lNpTGS~KdR~Al~~i~~A~~~G~----~~~IvetssGNhG~AlA~aaA~~Gl~c~Ivmp~~~~~~~~~nv~~mr~lGAe 431 (695)
T PRK13802 356 LNHTGAHKINNALGQALLVKRMGK----TRVIAETGAGQHGVATATVCAMLGLKCRIYMGQIDARRQALNVARMRMLGAE 431 (695)
T ss_pred CCCcCCcHHHHHHHHHHHHHHcCC----CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCcccccHHHHHHHHHcCCE
Confidence 999999999999999999999997 4678999999999999999999999999999985 467899999999999
Q ss_pred EEEECC-CCChHHHHHHHHH-HHHcCCC-ceecCCCCCh----HHHHHHHHHHHHHHHHhhCC-----CCCEEEEecCcc
Q 019047 205 IILTDP-EKGLRGALDKAEE-IVLNTPN-AYMFQQFDNM----ANLKIHFDSTGPEIWEDTLG-----CVDIFVAAIGTG 272 (347)
Q Consensus 205 V~~~~~-~~~~~~a~~~a~~-~a~~~~~-~~~~~~~~n~----~~~~~g~~ti~~Ei~~ql~~-----~~D~vv~pvG~G 272 (347)
|+.++. +.+++++++++.+ ++++.++ .|++.++.|+ .++..||+|+|.||++|+.+ .||+||+|||+|
T Consensus 432 Vi~v~~g~~~l~~Ai~ea~~~~~~~~~~~~y~i~~~~g~~P~p~~v~agq~tiG~EI~eQ~~~~~g~~~pD~VVa~VGgG 511 (695)
T PRK13802 432 VVEVTLGDRILKDAINEALRDWVTNVKDTHYLLGTVAGPHPFPAMVRDFQKIIGEEAKQQLQDWYGIDHPDAICACVGGG 511 (695)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhcCCceEeecccCCCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCCEEEEcCCch
Confidence 999984 3467888877744 6655443 4667777554 34557999999999999942 699999999999
Q ss_pred hHHHHHHHHHHhcCCCCeEEEEcCCCCccccC----------CCC-------C------------------------CCc
Q 019047 273 GTITGTGRFLKMMNKEIKVVGVEPAERSVISG----------ENA-------G------------------------YVP 311 (347)
Q Consensus 273 g~~~Gi~~~~k~~~~~~~vigVep~~~~~~~g----------~~~-------~------------------------~~p 311 (347)
||++|++.+|++ .++++||||||.++....| +.+ + ..|
T Consensus 512 g~~~Gi~~~f~~-~~~vkligVE~~g~g~~~g~h~~~~~~g~g~~g~~~g~~~~~~~~~~g~~~~~~sis~gLdy~gvgp 590 (695)
T PRK13802 512 SNAIGVMNAFLD-DERVNLYGYEAGGNGPESGKHAIRFAPGTGELGMFQGAKSYLLENDEGQTLDTYSISAGLDYASVGP 590 (695)
T ss_pred HHHHHHHHHHHh-CCCceEEEEEecCCCccccchhhhhhhccCCccccccceeecccCCCCCccCccccccccCCCCCCc
Confidence 999999999976 6889999999998743322 010 1 111
Q ss_pred hhccccccCeE--EEeCHHHHHHHHHHHHHhcCccccC
Q 019047 312 SILDVQLLDEV--IKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 312 ~~l~~~~vd~~--v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
..-..+.++++ ++|+|+|+++|++.|++.|||++||
T Consensus 591 ~~~~l~~~~rv~~~~vtD~eal~a~~~La~~EGIipa~ 628 (695)
T PRK13802 591 EHAWLKDIGRVNYSWATDEEAMNAFKDLCETEGIIPAI 628 (695)
T ss_pred hhHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCccccc
Confidence 11112224444 9999999999999999999999986
|
|
| >TIGR00260 thrC threonine synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=356.43 Aligned_cols=253 Identities=20% Similarity=0.137 Sum_probs=215.3
Q ss_pred HhccCCCCchhhhhhhccCCCceeeccccccCCCC-eEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeC
Q 019047 85 EGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVG-NVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPT 163 (347)
Q Consensus 85 ~~~~~~~~~~~~~v~~~~~~TPLv~~~~l~~~~g~-~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~as 163 (347)
|++++|+....+.+...+++|||++++++.+.+|. +||+|+|++|||||||||++.+++.++.+.|. ..|+++|
T Consensus 4 ~~~~lp~~~~~~~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~-----~~vv~aS 78 (328)
T TIGR00260 4 YREFLPVTPEKDLVDLGEGVTPLFRSPALVANVGIKNLYVLELFHNPTLSFKDRGMAVALTKALELGN-----DTVLCAS 78 (328)
T ss_pred chhhcCCCChhhhhhhccCCccCccchHHHHhcCCccEEehhhccCCchhhHhhhHHHHHHHHHHcCC-----CEEEEeC
Confidence 89999998766778899999999999999988887 99999999999999999999999999999885 5699999
Q ss_pred CChhHHHHHHHHHHcCCcEEEEeCCC-CCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCC--h
Q 019047 164 TGNTGLGIAFVAAVKGYKLIVTMPAS-TNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDN--M 240 (347)
Q Consensus 164 sGN~g~AlA~aa~~~Gl~~~I~vp~~-~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n--~ 240 (347)
+||||.|+|++|+.+|++|+||||++ +++.|+.+++.+||+|+.+++ +++++.+.+.+++++. +.++.++ .| +
T Consensus 79 sGN~g~a~A~~a~~~g~~~~v~~p~~~~s~~k~~~~~~~GA~Vi~~~~--~~~~~~~~~~~~~~~~-~~~~~~~-~n~~~ 154 (328)
T TIGR00260 79 TGNTGAAAAAYAGKAGVKVVILYPAGKISLGKLAQALGYNAEVVAIDG--NFDDAQRLVKQLFGDK-EALGLNS-VNSIP 154 (328)
T ss_pred CcHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHhcCcEEEEecC--CHHHHHHHHHHHHhhc-Ceeeccc-CCCCC
Confidence 99999999999999999999999998 899999999999999999986 4688888899888875 4555554 44 6
Q ss_pred HHHHHHHHHHHHHHHHhhCC-CCCEEEEecCcchHHHHHHHHHHhcC-C----CCeEEEEcCCCCc-cc----cCCCC--
Q 019047 241 ANLKIHFDSTGPEIWEDTLG-CVDIFVAAIGTGGTITGTGRFLKMMN-K----EIKVVGVEPAERS-VI----SGENA-- 307 (347)
Q Consensus 241 ~~~~~g~~ti~~Ei~~ql~~-~~D~vv~pvG~Gg~~~Gi~~~~k~~~-~----~~~vigVep~~~~-~~----~g~~~-- 307 (347)
.++ .||.|+++||++|+++ .+|+||+|+|+||+++|++.+|++.. . .+++++|||.+++ .. .++..
T Consensus 155 ~~~-~g~~t~~~Ei~~q~~~~~~d~iv~~vG~GG~~~G~~~~~~~~~~~g~~~~p~v~~Ve~~~~~~~~~~~~~~g~~~~ 233 (328)
T TIGR00260 155 YRL-EGQKTYAFEAVEQLGWEAPDKVVVPVPNSGNFGAILKGFKEKKEGGLDSLPVKRGIQAEGAADIVRAFLESGQWEP 233 (328)
T ss_pred eEe-eeehhHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHHHhcCCccCCceeEEEcCCCChHHHHHHcCCCcCc
Confidence 665 5999999999999975 79999999999999999999999741 1 3499999999873 22 12110
Q ss_pred ----CC--------Cch------hccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 308 ----GY--------VPS------ILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 308 ----~~--------~p~------~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.. .|. .+.++.+|+++.|+|+|+++++++|++++||++||
T Consensus 234 ~~~~~t~~~~l~~~~p~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~p 291 (328)
T TIGR00260 234 IEDPATLSTAIDIGNPANWERALELFRRSNGNAEDVSDEEILEAIKLLAREEGYFVEP 291 (328)
T ss_pred CCCCCccCcceecCCCCCHHHHHHHHHhcCCcEEecCHHHHHHHHHHHHHhcCeeECc
Confidence 00 121 22346789999999999999999999999999997
|
Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model. |
| >TIGR00263 trpB tryptophan synthase, beta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-44 Score=353.19 Aligned_cols=278 Identities=19% Similarity=0.211 Sum_probs=211.5
Q ss_pred CCCCCCCcccchhhHHHHHHHhccCCCCchhhh----hhhcc-CCCceeeccccccCCC-CeEEEEeCCCCCCCchhHHH
Q 019047 65 AASSSSSSLYATSTREIEKEEGNDFHGVNIAED----VTQLI-GRTPMVYLNKVTEGCV-GNVAAKLESMEPCRSVKDRI 138 (347)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----v~~~~-~~TPLv~~~~l~~~~g-~~Iy~K~E~~~ptGSfK~Rg 138 (347)
+..+..|+.......++.+.|...+-..+...+ +..+. ++|||+++++|++.+| ++||+|+|++|||||||+|+
T Consensus 6 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~TPL~~~~~l~~~~g~~~iy~K~E~~nptGS~K~R~ 85 (385)
T TIGR00263 6 FGGQYVPETLMPALEELEAAFEDAKADPAFWAELNELLRNYAGRPTPLTFAPNLTEALGGAKIYLKREDLNHTGAHKINN 85 (385)
T ss_pred cCCEeCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCCceehHHHHHHhCCCeEEEEeCCCCCCccchHHH
Confidence 344445555566667777777665544432222 23334 5899999999999887 79999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCC-CCH--HHHHHHHhcCCEEEEECCC-CCh
Q 019047 139 GYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS-TNL--ERRILLRAFGAEIILTDPE-KGL 214 (347)
Q Consensus 139 a~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~-~~~--~~~~~l~~~GA~V~~~~~~-~~~ 214 (347)
+..++..+++.|. +.+|+++|+||||+|+|++|+.+|++|+||||+. .+. .++.+|+.+||+|+.++.. .++
T Consensus 86 a~~~~~~a~~~g~----~~vi~e~ssGN~G~alA~~a~~~Gl~~~Iv~p~~~~~~~~~~~~~~~~~GA~Vv~v~~~~~~~ 161 (385)
T TIGR00263 86 ALGQALLAKRMGK----KRIIAETGAGQHGVATATAAALLGLDCEVYMGAEDVERQKPNVFRMELLGAKVIPVTSGSGTL 161 (385)
T ss_pred HHHHHHHHHHcCC----CEEEEEcCcHHHHHHHHHHHHHcCCCEEEEecCCcccccchHHHHHHHcCCEEEEECCCCCCH
Confidence 9999999998885 4556789999999999999999999999999985 443 5688999999999999753 346
Q ss_pred HHHHHHHH-HHHHcCCCceec-CCCCC----hHHHHHHHHHHHHHHHHhhC----CCCCEEEEecCcchHHHHHHHHHHh
Q 019047 215 RGALDKAE-EIVLNTPNAYMF-QQFDN----MANLKIHFDSTGPEIWEDTL----GCVDIFVAAIGTGGTITGTGRFLKM 284 (347)
Q Consensus 215 ~~a~~~a~-~~a~~~~~~~~~-~~~~n----~~~~~~g~~ti~~Ei~~ql~----~~~D~vv~pvG~Gg~~~Gi~~~~k~ 284 (347)
+++++++. +++++.++.+|+ .++.| +.++..||+|+|.||++|+. ..||+||+|+|+||+++|++.++.+
T Consensus 162 ~~a~~~~~~~~~~~~~~~~y~~~~~~~~~p~~~~~~~~~~t~g~Ei~~Ql~~~~~~~pD~vv~~vG~Gg~~~Gv~~~~~~ 241 (385)
T TIGR00263 162 KDAVNEALRDWVTSVDDTHYVLGSAVGPHPFPTMVRDFQSVIGEEAKEQILEQEGRLPDAVIACVGGGSNAIGIFYAFID 241 (385)
T ss_pred HHHHHHHHHHHHHhcCCceEEeCCcCCCCCchHHHHHHhhHHHHHHHHHHHhhhCCCCCEEEEEeCchHHHHHHHHHHhh
Confidence 77765554 445554456565 34432 34555799999999999983 2589999999999999999988855
Q ss_pred cCCCCeEEEEcCCCCc---------cccCCC------------------------------CCCCc--hhccccccCeEE
Q 019047 285 MNKEIKVVGVEPAERS---------VISGEN------------------------------AGYVP--SILDVQLLDEVI 323 (347)
Q Consensus 285 ~~~~~~vigVep~~~~---------~~~g~~------------------------------~~~~p--~~l~~~~vd~~v 323 (347)
.++++||||||.++. +..|.. ++..| +.+....+|+++
T Consensus 242 -~~~~~iigVe~~gs~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~tia~gl~~~~~~p~~~~~~~~~~~~~v 320 (385)
T TIGR00263 242 -DPSVQLIGVEAGGLGIDTDKHAATLAKGSPGVLHGMKTYLLQDEDGQILEAHSVSAGLDYPGVGPEHAYLHETGRATYE 320 (385)
T ss_pred -CCCCeEEEEEeCCCcccchhhhhhhhcCCeeEecCcccccccCCCCcccccceeeccccCCCCCHHHHHHHhcCCeEEE
Confidence 689999999998742 222210 01111 123345578899
Q ss_pred EeCHHHHHHHHHHHHHhcCccccC
Q 019047 324 KVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 324 ~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
+|+|+|+++++++|++.|||++||
T Consensus 321 ~Vsd~e~~~a~~~la~~egi~~~~ 344 (385)
T TIGR00263 321 AITDDEALEAFKLLSRNEGIIPAL 344 (385)
T ss_pred EECHHHHHHHHHHHHHhcCCeech
Confidence 999999999999999999999986
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model. |
| >cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-44 Score=350.02 Aligned_cols=254 Identities=20% Similarity=0.226 Sum_probs=200.6
Q ss_pred CCCCchhhhhhh--ccCCCceeeccccccCC-CCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCC
Q 019047 89 FHGVNIAEDVTQ--LIGRTPMVYLNKVTEGC-VGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTG 165 (347)
Q Consensus 89 ~~~~~~~~~v~~--~~~~TPLv~~~~l~~~~-g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assG 165 (347)
.++++..+.+.. ...+|||+++++|++.+ +++||+|+|++|||||||+|++..++..+.++|. ..+|+++|+|
T Consensus 17 ~~~~~~~~~~~~~~~~~~TPL~~l~~l~~~~g~~~l~~K~E~~nptgS~K~R~a~~~~~~a~~~g~----~~vv~~~ssG 92 (365)
T cd06446 17 PDFPEELRELYKDYVGRPTPLYRAKRLSEYLGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----KRVIAETGAG 92 (365)
T ss_pred cccHHHHHHHhhccCCCCCCceehHHHHHhhCCceEEEEeccCCCccchhHHHHHHHHHHHHHcCC----CeEEEecCch
Confidence 455666666666 34699999999999887 5799999999999999999999999999999886 3455557999
Q ss_pred hhHHHHHHHHHHcCCcEEEEeCCCCC---HHHHHHHHhcCCEEEEECCCC-ChHHHHHHHHHHHHcC-CC-ceecCCCC-
Q 019047 166 NTGLGIAFVAAVKGYKLIVTMPASTN---LERRILLRAFGAEIILTDPEK-GLRGALDKAEEIVLNT-PN-AYMFQQFD- 238 (347)
Q Consensus 166 N~g~AlA~aa~~~Gl~~~I~vp~~~~---~~~~~~l~~~GA~V~~~~~~~-~~~~a~~~a~~~a~~~-~~-~~~~~~~~- 238 (347)
|||+|+|++|+.+|++|+||||...+ ..++.+|+.+||+|+.++... ++++++.++.+...+. ++ .|++.++.
T Consensus 93 N~g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~~~~GAeV~~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~~~~ 172 (365)
T cd06446 93 QHGVATATACALFGLECEIYMGAVDVERQPLNVFRMELLGAEVVPVPSGSGTLKDAISEAIRDWVTNVEDTHYLLGSVVG 172 (365)
T ss_pred HHHHHHHHHHHHhCCCeEEEEcCCccccccchHHHHHHCCCEEEEeCCCCCcHHHHHHHHHHHHHhccCCceEecccccC
Confidence 99999999999999999999998633 367889999999999998542 4567765565543332 23 44333321
Q ss_pred ---ChHHHHHHHHHHHHHHHHhhC----CCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccccCC------
Q 019047 239 ---NMANLKIHFDSTGPEIWEDTL----GCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGE------ 305 (347)
Q Consensus 239 ---n~~~~~~g~~ti~~Ei~~ql~----~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~g~------ 305 (347)
++.+++.||+|+++||++|+. ..||+||+|+|+||+++|++.++++ .++++||||||.+++.+.+.
T Consensus 173 ~~~~~~~~~ag~~t~~~EI~~Q~~~~~~~~~D~vv~~vG~GGt~~Gi~~g~~~-~~~~~vigVep~gs~~~~~~~~~~~~ 251 (365)
T cd06446 173 PHPYPNMVRDFQSVIGEEAKKQILEKEGELPDVVIACVGGGSNAAGLFYPFIN-DKDVKLIGVEAGGCGLETGGHAAYLF 251 (365)
T ss_pred CCCchHHHHHhhhHHHHHHHHHHHHhcCCCCCEEEEecCccHHHHHHHHHHHh-CCCceEEEEcCCCCccccccceeecc
Confidence 234566799999999999995 3699999999999999999998877 45899999999987654321
Q ss_pred --CC-------------------------------CCCc--hhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 306 --NA-------------------------------GYVP--SILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 306 --~~-------------------------------~~~p--~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.. ...+ +.+..+.+|+++.|+|+|+++++++|+++|||++||
T Consensus 252 ~g~~~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~r~la~~eGi~~ep 328 (365)
T cd06446 252 GGTAGVLHGLKMYTLQDEDGQIVPPHSISAGLDYPGVGPEHAYLKDSGRVEYVAVTDEEALEAFKLLARTEGIIPAL 328 (365)
T ss_pred CCCcceecchhhhccccccCCCCCcccccccccCCCCCHHHHHHHHhCCceEEEeChHHHHHHHHHHHHhcCceeCc
Confidence 00 0011 113456689999999999999999999999999997
|
In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions. |
| >TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-44 Score=351.62 Aligned_cols=243 Identities=19% Similarity=0.177 Sum_probs=203.3
Q ss_pred ccCCCceeeccccccCCC-CeEEEEeCCCCC-CCchhHHHHHHHHHHHHHc----------------CCCC--CCCeEEE
Q 019047 101 LIGRTPMVYLNKVTEGCV-GNVAAKLESMEP-CRSVKDRIGYSMITDAEES----------------GDIT--PGKTVLV 160 (347)
Q Consensus 101 ~~~~TPLv~~~~l~~~~g-~~Iy~K~E~~~p-tGSfK~Rga~~~~~~a~~~----------------G~~~--~g~~~vv 160 (347)
.+.+|||++++.|++.+| .+||+|+|++|+ +||||+||+++.+..+.+. +.+. .+...|+
T Consensus 19 ~~~~TPL~~~~~l~~~~g~~~v~~K~E~~~~~tgSFK~RG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv 98 (376)
T TIGR01747 19 GYRPTPLCALDHLANLLGLKKILVKDESKRFGLNAFKMLGGSYAIAQYLAEKLHLDIETLSFEHLKNDAIGEKMGQATFA 98 (376)
T ss_pred CCCCCCCcchHHHHHHhCCCcEEEeeCCCCCCCCChHHHHHHHHHHHHHHHHhCCCcccCCHHHHhhhHHHhhcCCCEEE
Confidence 346999999999999999 599999999985 8999999999999887653 1111 1245799
Q ss_pred EeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecC-----
Q 019047 161 EPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQ----- 235 (347)
Q Consensus 161 ~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~----- 235 (347)
++|+||||+|+|++|+.+|++|+||||+++++.|+.+|+.+||+|+.+++ +++++.+.+.++++++ ++++++
T Consensus 99 ~aSsGN~g~a~A~~Aa~~G~~~~I~vP~~~~~~k~~~i~~~GAeVi~v~~--~~~~a~~~a~~~~~~~-g~~~~~~~~~~ 175 (376)
T TIGR01747 99 TATDGNHGRGVAWAAQQLGQKAVVYMPKGSAQERVENILNLGAECTITDM--NYDDTVRLAMQMAQQH-GWVVVQDTAWE 175 (376)
T ss_pred EECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CcEEecccccc
Confidence 99999999999999999999999999999999999999999999999986 4688999999988876 678776
Q ss_pred CCCC--hHHHHHHHHHHHHHHHHhhCC----CCCEEEEecCcchHHHHHHHHHHhcCC--CCeEEEEcCCCCccc-----
Q 019047 236 QFDN--MANLKIHFDSTGPEIWEDTLG----CVDIFVAAIGTGGTITGTGRFLKMMNK--EIKVVGVEPAERSVI----- 302 (347)
Q Consensus 236 ~~~n--~~~~~~g~~ti~~Ei~~ql~~----~~D~vv~pvG~Gg~~~Gi~~~~k~~~~--~~~vigVep~~~~~~----- 302 (347)
+|+| ++. +.||+|+++||++|+.+ .||+||+|+|+||+++|++.++++..+ .++||+|||++++.+
T Consensus 176 ~~~~~~~~i-i~G~~Tia~Ei~eQl~~~~~~~pD~vvvpvG~GGl~~Gi~~~~~~~~~~~~p~vi~Vep~ga~~~~~s~~ 254 (376)
T TIGR01747 176 GYEKIPTWI-MQGYATLADEAVEQLREMGSVTPTHVLLQAGVGSMAGGVLGYFVDVYSENNPHSIVVEPDKADCLYQSAV 254 (376)
T ss_pred ccccCCchH-HHHHHHHHHHHHHHhhccCCCCCCEEEECCchhHHHHHHHHHHHHhcCCCCCEEEEEeeCCCCHHHHHHH
Confidence 5665 444 46999999999999962 799999999999999999999987643 379999999987432
Q ss_pred c--CC------------------CCCCCchhccccccCeEEEeCHHHHHHHHHHHHHhc----CccccC
Q 019047 303 S--GE------------------NAGYVPSILDVQLLDEVIKVTNDEAVNMARRLALEE----GLLVMC 347 (347)
Q Consensus 303 ~--g~------------------~~~~~p~~l~~~~vd~~v~Vsd~ea~~a~~~La~~e----GI~~G~ 347 (347)
. |. .++..+|.+.++.++.+++|+|+|+.+|+++|++.. +|+++|
T Consensus 255 ~~~g~~~~~~~~~~Tiadgl~~~~~~~~~~~~~~~~~~~~v~V~D~ei~~A~~~L~~~~g~~~~i~~ep 323 (376)
T TIGR01747 255 KKDGDIVNVGGDMATIMAGLACGEPNPISWEILRNCTSQFISAQDSVAAKGMRVLGAPYGGDPRIISGE 323 (376)
T ss_pred hcCCCeEEcCCCccccccccccCCcchHHHHHHHhcCCEEEEcCHHHHHHHHHHHhcccCCCCeEeeeC
Confidence 2 20 112245566778899999999999999999999855 498887
|
This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase). |
| >TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=350.11 Aligned_cols=244 Identities=21% Similarity=0.191 Sum_probs=200.2
Q ss_pred ccCCCceeeccccccCCC-CeEEEEeCCCCC-CCchhHHHHHHHHHHHH--HcCCC--------------C--CCCeEEE
Q 019047 101 LIGRTPMVYLNKVTEGCV-GNVAAKLESMEP-CRSVKDRIGYSMITDAE--ESGDI--------------T--PGKTVLV 160 (347)
Q Consensus 101 ~~~~TPLv~~~~l~~~~g-~~Iy~K~E~~~p-tGSfK~Rga~~~~~~a~--~~G~~--------------~--~g~~~vv 160 (347)
.+.+|||++++.|++.+| ++||+|+|++|+ |||||+||+.+.+..+. +.|.. . ....+||
T Consensus 38 ~~~~TPL~~~~~L~~~~g~~~v~lK~E~~q~~tGSFK~RGa~~~v~~l~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~vv 117 (396)
T TIGR03528 38 GYQPTPLAELDNLAKHLGVGSILVKDESYRFGLNAFKVLGGSYAIGKYLAEKLGKDISELSFEKLKSNEIREKLGDITFV 117 (396)
T ss_pred CCcCCCCcchHHHHHHhCCCcEEEeeCCCCCCcCChHHHHHHHHHHHHHHHHhCCCcccccHHHhhhHHHHhhccCcEEE
Confidence 446999999999999999 699999999885 99999999999999863 33310 0 0123799
Q ss_pred EeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecC-----
Q 019047 161 EPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQ----- 235 (347)
Q Consensus 161 ~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~----- 235 (347)
++|+||||+|+|++|+.+|++|+||||+++++.|+..|+.+||+|+.+++ +++++.+.+.++++++ ++++++
T Consensus 118 ~aSsGN~g~alA~~aa~~Gi~~~IvvP~~~~~~K~~~ir~~GAeVi~~~~--~~~~a~~~a~~~a~~~-g~~~v~~~~~~ 194 (396)
T TIGR03528 118 TATDGNHGRGVAWAANQLGQKSVVYMPKGSAQIRLENIRAEGAECTITDL--NYDDAVRLAWKMAQEN-GWVMVQDTAWE 194 (396)
T ss_pred EECccHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-CcEeecccccc
Confidence 99999999999999999999999999999999999999999999999985 4688999999999886 778775
Q ss_pred CCCCh-HHHHHHHHHHHHHHHHhhC----CCCCEEEEecCcchHHHHHHHHHHhc-CCC-CeEEEEcCCCCccc-----c
Q 019047 236 QFDNM-ANLKIHFDSTGPEIWEDTL----GCVDIFVAAIGTGGTITGTGRFLKMM-NKE-IKVVGVEPAERSVI-----S 303 (347)
Q Consensus 236 ~~~n~-~~~~~g~~ti~~Ei~~ql~----~~~D~vv~pvG~Gg~~~Gi~~~~k~~-~~~-~~vigVep~~~~~~-----~ 303 (347)
+|+|. ..++.||+|+++||++|++ +.||+||+|+|+||+++|++.++++. .+. ++||+|||++++.+ .
T Consensus 195 ~~~~~~~~~i~G~~Tig~EI~eQl~~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~p~vi~Vep~~a~~l~~s~~~ 274 (396)
T TIGR03528 195 GYEKIPTWIMQGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYFASAYGEERPITVIVEPDAADCLYRSAIA 274 (396)
T ss_pred ccccCchHHHHHHhHHHHHHHHHHhhcCCCCCCEEEEcCCcchHHHHHHHHHHHhcCCCCCEEEEEccCCCchHHHHHHh
Confidence 67662 2233699999999999996 37999999999999999999988654 333 59999999987433 1
Q ss_pred --CC------------------CCCCCchhccccccCeEEEeCHHHHHHHHHHHHH----hcCccccC
Q 019047 304 --GE------------------NAGYVPSILDVQLLDEVIKVTNDEAVNMARRLAL----EEGLLVMC 347 (347)
Q Consensus 304 --g~------------------~~~~~p~~l~~~~vd~~v~Vsd~ea~~a~~~La~----~eGI~~G~ 347 (347)
|. .++..++.+.++.+|+++.|+|+|+.+++++|++ +++++++|
T Consensus 275 ~~g~~~~~~g~~~Tiadgl~~~~p~~~~~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~~~~~ep 342 (396)
T TIGR03528 275 DDGKPHFVTGDMATIMAGLACGEPNTIGWEILRDYASQFISCPDWVAAKGMRILGNPLKGDPRVISGE 342 (396)
T ss_pred cCCCEEEeCCCccceecccccCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHhcccCCCCceeecC
Confidence 20 0122334555678999999999999999999997 56888886
|
Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate. |
| >KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-44 Score=323.92 Aligned_cols=245 Identities=19% Similarity=0.332 Sum_probs=219.4
Q ss_pred hhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHH
Q 019047 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (347)
Q Consensus 94 ~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~ 173 (347)
.++++.+.+..||.+..+.|-+..|.+||||+|.+|-+|+||.|||.+.+..+..... .+.|++.|+||||.|+|+
T Consensus 15 A~~rik~~ihkTpVlTS~~ln~~~g~~vfFKcE~fQKtGaFKfRGAlNav~~l~~ek~----~kgvithSSGNHaqAlal 90 (323)
T KOG1251|consen 15 AHQRIKPFIHKTPVLTSENLNEKVGRHVFFKCENFQKTGAFKFRGALNAVSSLKAEKR----AKGVITHSSGNHAQALAL 90 (323)
T ss_pred HHHHHHhhhccCceechhhHHHHhhhheEeehhhhhhccceehhhhHHHHHHhhHhhh----cCceEeecCCcHHHHHHH
Confidence 4567788888999999999999999999999999999999999999999998874333 356999999999999999
Q ss_pred HHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHH
Q 019047 174 VAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPE 253 (347)
Q Consensus 174 aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~E 253 (347)
+|+..||+|+|+||++.+..|+..++.|||+|+.+++. .++.-+.|.++.++. +.+++++|+++..+ .||.|++.|
T Consensus 91 aAk~~giPa~IVvP~~AP~~Kv~a~~~Yga~ii~~e~~--~~sRE~va~~ltee~-g~~~i~Py~~p~vI-aGqgTiA~E 166 (323)
T KOG1251|consen 91 AAKILGIPATIVVPKDAPICKVAATRGYGANIIFCEPT--VESRESVAKDLTEET-GYYLIHPYNHPSVI-AGQGTIALE 166 (323)
T ss_pred HHHhcCCCeEEEecCCChHHHHHHHHhcCceEEEecCc--cchHHHHHHHHHHhc-CcEEeCCCCCccee-eccchHHHH
Confidence 99999999999999999999999999999999999864 356667788899887 89999999999887 699999999
Q ss_pred HHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCC-----ccccCC-----------------CCCCCc
Q 019047 254 IWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAER-----SVISGE-----------------NAGYVP 311 (347)
Q Consensus 254 i~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~-----~~~~g~-----------------~~~~~p 311 (347)
++||. +..|.+|+|+|+||+++|++...+.+.|+++|++|||++. +.+.|. ..+...
T Consensus 167 lleqV-g~iDalfvpvgGGGllSgvAlaa~~l~P~i~vy~veP~~a~d~~qsf~~g~I~~l~tp~TIADG~r~~~lG~~t 245 (323)
T KOG1251|consen 167 LLEQV-GEIDALFVPVGGGGLLSGVALAAKSLKPSIEVYAVEPEAADDGQQSFLKGKIVHLDTPKTIADGVRTSHLGPLT 245 (323)
T ss_pred HHHhh-CccceEEEeecCcchhhHHHHHHhccCCCcEEEEecCcccchHHHHHhcCCeEecCCchhhhhhhhhccccccc
Confidence 99999 5899999999999999999999999999999999999764 344441 135678
Q ss_pred hhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 312 SILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 312 ~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
|++.++.+|++++|+|+|+.++++.++++..+.+.|
T Consensus 246 ~pIir~~vddi~Tv~e~Ei~~~lk~~~ermK~~vEP 281 (323)
T KOG1251|consen 246 WPIIRDLVDDILTVSEDEIKEALKLIWERMKVVVEP 281 (323)
T ss_pred hHHHHHHhhhheeecHHHHHHHHHHHHHHHheeecc
Confidence 899999999999999999999999999998888776
|
|
| >PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-43 Score=362.57 Aligned_cols=284 Identities=18% Similarity=0.190 Sum_probs=225.9
Q ss_pred cccccCCCCCCCCcccchhhHHHHHHHhccCCCCchhhhh---hhcc--CCCceeeccccccCCCCeEEEEeCCCCCCCc
Q 019047 59 SAKAGAAASSSSSSLYATSTREIEKEEGNDFHGVNIAEDV---TQLI--GRTPMVYLNKVTEGCVGNVAAKLESMEPCRS 133 (347)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~--~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGS 133 (347)
..+...+.....|+...+...||.+.|......++...++ ...+ ++|||+++++|++.+|++||+|+|++|||||
T Consensus 221 ~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grpTPL~~~~~Ls~~~G~~IylK~E~lnptGS 300 (610)
T PRK13803 221 AGRYGTFGGAYVPETLMANLQELQESYTKIIKSNEFQKTFKRLLQNYAGRPTPLTEAKRLSDIYGARIYLKREDLNHTGS 300 (610)
T ss_pred CCcccCcCCEeCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCcceeHHHHHHhhCCEEEEEeCCCCCccc
Confidence 3455668888888888999999999999877776544443 3333 5899999999999888999999999999999
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCC---CHHHHHHHHhcCCEEEEECC
Q 019047 134 VKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST---NLERRILLRAFGAEIILTDP 210 (347)
Q Consensus 134 fK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~---~~~~~~~l~~~GA~V~~~~~ 210 (347)
||+|++..++..|++.|+ +++++++|+||||+|+|++|+.+|++|+||||+.. ...++.+|+.+||+|+.++.
T Consensus 301 ~K~r~al~~~~~a~~~g~----~~vi~e~gsGnhG~A~A~~aa~~Gl~~~I~m~~~~~~~~~~nv~~m~~~GA~Vi~v~~ 376 (610)
T PRK13803 301 HKINNALGQALLAKRMGK----TRIIAETGAGQHGVATATACALFGLKCTIFMGEEDIKRQALNVERMKLLGANVIPVLS 376 (610)
T ss_pred HHHHHHHHHHHHHHHcCC----CEEEEecChHHHHHHHHHHHHHcCCcEEEEEeCCcccchhhHHHHHHHCCCEEEEECC
Confidence 999999999999999885 46677899999999999999999999999999763 35678899999999999984
Q ss_pred -CCChHHHHHHHHHHH-HcCCCceecCCCC-C----hHHHHHHHHHHHHHHHHhhC----CCCCEEEEecCcchHHHHHH
Q 019047 211 -EKGLRGALDKAEEIV-LNTPNAYMFQQFD-N----MANLKIHFDSTGPEIWEDTL----GCVDIFVAAIGTGGTITGTG 279 (347)
Q Consensus 211 -~~~~~~a~~~a~~~a-~~~~~~~~~~~~~-n----~~~~~~g~~ti~~Ei~~ql~----~~~D~vv~pvG~Gg~~~Gi~ 279 (347)
..++++++.++.+.. .+.++.+|+.++. + +.++..||+|||.||++|+. ..||+||+|+|+|||++|++
T Consensus 377 ~~~~~~~a~~~a~~~~~~~~~~~~y~~~~~~g~~p~p~~v~~~~~tig~Ei~~Q~~~~~g~~pD~vV~~vGgGg~~~Gi~ 456 (610)
T PRK13803 377 GSKTLKDAVNEAIRDWVASVPDTHYLIGSAVGPHPYPEMVAYFQSVIGEEAKEQLKEQTGKLPDAIIACVGGGSNAIGIF 456 (610)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCcEEEeCCcCCCCCcHHHHHHHhhHHHHHHHHHHHHhhCCCCCEEEEEeCcCHhHHHHH
Confidence 345778877766643 4445676764332 1 34444589999999999984 36999999999999999999
Q ss_pred HHHHhcCCCCeEEEEcCCCCcc--------ccCCC-------------------------------CCCCch--hccccc
Q 019047 280 RFLKMMNKEIKVVGVEPAERSV--------ISGEN-------------------------------AGYVPS--ILDVQL 318 (347)
Q Consensus 280 ~~~k~~~~~~~vigVep~~~~~--------~~g~~-------------------------------~~~~p~--~l~~~~ 318 (347)
.+|++ .++++||||||.++.. +.++. ++..|. .+....
T Consensus 457 ~~f~~-~~~v~iigVE~~g~~~~~~~~~a~l~~g~~g~~~g~~~~~~~~~~g~~~~~~sia~gl~~~gvg~~~~~~~~~~ 535 (610)
T PRK13803 457 YHFLD-DPSVKLIGVEAGGKGVNTGEHAATIKKGRKGVLHGSMTYLMQDENGQILEPHSISAGLDYPGIGPMHANLFETG 535 (610)
T ss_pred HHHhh-CCCceEEEEecCCCCcccccccchhhcCCeeeeccceeeeecccCCcccCCceeeccCCCCCCCHHHHHHHhcC
Confidence 99965 7899999999987522 11110 111121 122344
Q ss_pred cCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 319 LDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 319 vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.++++.|+|+|+++|+++|++.|||++|+
T Consensus 536 ~~~~v~Vtd~ea~~a~~~La~~eGi~~~~ 564 (610)
T PRK13803 536 RAIYTSVTDEEALDAFKLLAKLEGIIPAL 564 (610)
T ss_pred CeEEEEECHHHHHHHHHHHHHHcCCccCc
Confidence 56899999999999999999999999885
|
|
| >KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-43 Score=321.04 Aligned_cols=253 Identities=34% Similarity=0.578 Sum_probs=216.9
Q ss_pred hhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHH
Q 019047 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (347)
Q Consensus 94 ~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~ 173 (347)
+...+...+|+|||++++.|++.+||+||.|.|.+||+||.|||.|++++..|+|.|++.+|. .|+|.|+|++|.++|.
T Consensus 39 ~~~Gv~~~IGnTpliri~sLs~aTGcnIlaK~Ef~NPggS~KDRvAl~iir~Aee~GkL~~gg-~v~EGtaGsTgIslA~ 117 (391)
T KOG1481|consen 39 IVSGVEGAIGNTPLIRINSLSNATGCNILAKAEFLNPGGSVKDRVALYIIRTAEEKGKLVRGG-TVVEGTAGSTGISLAH 117 (391)
T ss_pred ccchhHHhhCCCceEEeeccccccccchhhhhhccCCCCChhhhhHHHHHHHHHHcCCcccCc-eEEecCCCccchhHHH
Confidence 334677889999999999999999999999999999999999999999999999999999995 5899999999999999
Q ss_pred HHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCC--ChHHHHHHHHHHHHcCCC------ceecCCCCChHHHHH
Q 019047 174 VAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEK--GLRGALDKAEEIVLNTPN------AYMFQQFDNMANLKI 245 (347)
Q Consensus 174 aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~--~~~~a~~~a~~~a~~~~~------~~~~~~~~n~~~~~~ 245 (347)
.|..+|++|+|+||++++.+|.+.++.+||+|+.+++.. +-..-+..|++.+.+.++ .+|.+||+|..||..
T Consensus 118 v~~a~Gyk~~I~mPddqs~eK~~ile~LGA~V~rV~pa~i~dp~~yvn~Arr~an~~~~~~ngi~g~fAdQFeN~AN~~a 197 (391)
T KOG1481|consen 118 VARALGYKCHIYMPDDQSQEKSDILEFLGAEVHRVPPAPIVDPNHYVNQARRAANETPNASNGIRGWFADQFENVANWLA 197 (391)
T ss_pred hhhhcCcceEEECCChHHHHHHHHHHHhcceeeecCCcCccChhHHHHHHHHHhhhcccccCCcccchhhhhcCHHHHHH
Confidence 999999999999999999999999999999999987522 112334445554444322 366799999999999
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCC-CeEEEEcCCCCccccC--------------------
Q 019047 246 HFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKE-IKVVGVEPAERSVISG-------------------- 304 (347)
Q Consensus 246 g~~ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~-~~vigVep~~~~~~~g-------------------- 304 (347)
||.|+|+|||.|..+++|.+++.+|+||+++|+.+++|++.+. +.++-++|-++.+...
T Consensus 198 HyetTGPEIw~QtkGniDaFia~~GTGGTiaGVskyLkek~~~~v~~~laDPpGSGlYnkV~~GVmy~~~e~eG~r~r~q 277 (391)
T KOG1481|consen 198 HYETTGPEIWHQTKGNIDAFIAGTGTGGTIAGVSKYLKEKSDGRVAVFLADPPGSGLYNKVNYGVMYDHIETEGTRRRNQ 277 (391)
T ss_pred HhcCcCcHHHHhhcCCcceEEeccCCCcchHHHHHHHhhcCCCceEEEEeCCCCCchhhhhhhhhhhhhhhhcCcccCCC
Confidence 9999999999999999999999999999999999999998765 8899999988744322
Q ss_pred -------CCCCCCc--hhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 305 -------ENAGYVP--SILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 305 -------~~~~~~p--~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
..-..+. +....+++|+.+.|+|++++++.++|..++|+++|.
T Consensus 278 ~dti~EGIGinRiT~Nf~m~~~liD~a~rv~Deqai~Msr~Ll~~dGLFvGs 329 (391)
T KOG1481|consen 278 VDTITEGIGINRITGNFQMAEDLIDDAMRVTDEQAINMSRYLLDNDGLFVGS 329 (391)
T ss_pred cchhhhcccccccccccccchhhhhhheecChHHHHHHHHHhhhcCceEecc
Confidence 0111122 234467799999999999999999999999999984
|
|
| >TIGR03844 cysteate_syn cysteate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=341.86 Aligned_cols=254 Identities=16% Similarity=0.083 Sum_probs=208.0
Q ss_pred HHHHHHhccCCCCchhhhhhhccCCCceeeccccccCCCC-eEEEEeCC-------CCCCCchhHHHHHHHHHHHHHcCC
Q 019047 80 EIEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVG-NVAAKLES-------MEPCRSVKDRIGYSMITDAEESGD 151 (347)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~v~~~~~~TPLv~~~~l~~~~g~-~Iy~K~E~-------~~ptGSfK~Rga~~~~~~a~~~G~ 151 (347)
.+|+ |++++|+.+. ....+.|||+++++|++.+|. +||+|+|+ +|||||||||++.+++.++.+.|.
T Consensus 43 ~~wr-y~~~lP~~~~----~~~~g~tpl~~~~~L~~~lG~~~v~~K~e~~~~K~E~~npTGSFKdRga~~~i~~a~~~g~ 117 (398)
T TIGR03844 43 GIFR-YYDWLPVTGH----LRTRGGPVTYKSEGLARELGLSDLYITFSGYWPERGAFMRTCSFKELEALPTMQRLKERGG 117 (398)
T ss_pred chhh-hHhhCCCCCC----CCCCCCCceeehHHHHHHhCCCeEEEEecCcccchhccCCccccHHHHHHHHHHHHHHcCC
Confidence 4776 8999998653 456778999999999999997 99996666 899999999999999999999884
Q ss_pred CCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCc
Q 019047 152 ITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNA 231 (347)
Q Consensus 152 ~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~ 231 (347)
+.|+++|+||||.|+|++|+.+|++|+||||++....+...++.+||+|+.+++ +++++++.+.++++++ ++
T Consensus 118 -----~~Vv~aSsGN~g~alA~~aa~~Gi~~~I~vP~~~~~~~~~~~~~~ga~vv~v~g--~~d~a~~~a~~~a~~~-g~ 189 (398)
T TIGR03844 118 -----KTLVVASAGNTGRAFAEVSAITGQPVILVVPKSSADRLWTTEPASSVLLVTVDG--DYTDAIALADRIATLP-GF 189 (398)
T ss_pred -----CEEEEECCCHHHHHHHHHHHHcCCcEEEEECCChHHHHHHHhhCCcEEEEECCC--CHHHHHHHHHHHHHhC-Cc
Confidence 669999999999999999999999999999998644333335788999999986 4789999999998875 66
Q ss_pred eecCCCCChHHHHHHHHHHHHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhc-------CCCCeEEEEcCCCCccc--
Q 019047 232 YMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMM-------NKEIKVVGVEPAERSVI-- 302 (347)
Q Consensus 232 ~~~~~~~n~~~~~~g~~ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~-------~~~~~vigVep~~~~~~-- 302 (347)
+..++++|+..+ .|++|+++||++|++..||+||+|+|+|+++.|++.+++++ ..-+++++|||++|+.+
T Consensus 190 ~~~~~~~~p~~i-eG~~Ti~~Ei~eql~~~PD~VvvPvG~G~~~~~~~~~~~~l~~~g~i~~~~P~l~~VQ~eg~~p~~~ 268 (398)
T TIGR03844 190 VPEGGARNVARR-DGMGTVMLDAAVTIGSLPDHYFQAVGSGTGGIAAWEAAMRLIEDGRFGSKLPRLHLAQNLPFVPMVN 268 (398)
T ss_pred cccCCCCCHHHH-hhHHHHHHHHHHHcCCCCCEEEEecCCCHHHHHHHHHHHHHHHcCCccCCCCCEEEEEcCCchHHHH
Confidence 545667788876 69999999999999755999999999999899999888773 23479999999988533
Q ss_pred ---cCCC--------C-------CC--------Cc--------hhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 303 ---SGEN--------A-------GY--------VP--------SILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 303 ---~g~~--------~-------~~--------~p--------~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.|.. + .. .| ....++..++++.|+|+|+.+|++.|++++||++.|
T Consensus 269 a~~~g~~~~~~~~~~~~~~~~~~~t~a~~l~i~~p~~~~~~~~l~air~~~g~~v~Vsd~eI~~A~~~l~~~~gi~vEp 347 (398)
T TIGR03844 269 AWQEGRREIIPESDMPDAENSIEEVYSDVLTNRTPPYGVTGGVFDALIATGGQMYGVSNKEAVSAGKLFEESEGIDILP 347 (398)
T ss_pred HHHcCCCccccccCCccccccccceecceeeeCCCCcchHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhhCCccccc
Confidence 2311 0 00 01 122346678999999999999999999999999876
|
Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M. |
| >PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=329.51 Aligned_cols=238 Identities=33% Similarity=0.496 Sum_probs=194.3
Q ss_pred hhhccCCCceeecc--ccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHH
Q 019047 98 VTQLIGRTPMVYLN--KVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVA 175 (347)
Q Consensus 98 v~~~~~~TPLv~~~--~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa 175 (347)
|++++++|||++++ .+.+..+++||+|+|++|||||||+|++.+++.+++++|. +.|+++|+||||.|+|++|
T Consensus 1 i~~~~~~TPl~~~~~~~~~~~~~~~i~~K~E~~~ptgs~K~R~a~~~l~~a~~~~~-----~~vv~assGN~g~a~A~~a 75 (306)
T PF00291_consen 1 ISLGIGPTPLVRLPSRLLSELGGANIYLKREDLNPTGSFKDRGAYYLLSRAKEKGG-----RTVVGASSGNHGRALAYAA 75 (306)
T ss_dssp GGGGSSSS-EEEEHEHHHHHCTTSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTT-----SEEEEESSSHHHHHHHHHH
T ss_pred CcCCCcCCCEEECccccchhccCCeEEEEECCCCCcCCcccccchhhhhhcccccc-----ceeeeeccCCceehhhhhh
Confidence 56789999999976 4445567899999999999999999999999999999874 5689999999999999999
Q ss_pred HHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHc-------CCCceecCCCCChHHHHHHHH
Q 019047 176 AVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLN-------TPNAYMFQQFDNMANLKIHFD 248 (347)
Q Consensus 176 ~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~-------~~~~~~~~~~~n~~~~~~g~~ 248 (347)
+.+|++|+||||++++..++.+|+.+||+|+.++.+ ++++.+.+.+++++ .++. +++| ++.+...||.
T Consensus 76 ~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~g~~ 150 (306)
T PF00291_consen 76 ARLGLKCTIVVPEDVSPEKLKQMRALGAEVILVPGD--VEGAFDDAQELAKERAELLSPFNGE--LNQY-NNPNVIAGYA 150 (306)
T ss_dssp HHHTCEEEEEEETTSHHHHHHHHHHTTCEEEEESST--HHHHHHHHHHHHHHHHHHHHHSTTE--ESTT-TSHHHHHHHH
T ss_pred hhccccceeeeccccccccccceeeecceEEEcccc--ccccccccccccccccccccccccc--cCcc-cchhhhhhhh
Confidence 999999999999999999999999999999998853 34555555555442 1122 5667 4445557999
Q ss_pred HHHHHHHHhhCCCCCE--EEEecCcchHHHHHHHHHHh--cCCCCeEEEEcCCCCcccc-----CC-------------C
Q 019047 249 STGPEIWEDTLGCVDI--FVAAIGTGGTITGTGRFLKM--MNKEIKVVGVEPAERSVIS-----GE-------------N 306 (347)
Q Consensus 249 ti~~Ei~~ql~~~~D~--vv~pvG~Gg~~~Gi~~~~k~--~~~~~~vigVep~~~~~~~-----g~-------------~ 306 (347)
+++.||.+|++ .||. ||+|+|+||+++|++.+++. . ++++||+|||..++.+. |. .
T Consensus 151 ~~~~Ei~~q~~-~~d~d~vvv~~GtGg~~~Gi~~~~~~~~~-~~~~vigv~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~ 228 (306)
T PF00291_consen 151 TIGLEIYEQLG-KPDPDYVVVPVGTGGTAAGIAAGLKELIL-PPVRVIGVEPEGSDPLYRSFKAGKPIRLPGESTIAGLG 228 (306)
T ss_dssp HHHHHHHHHHT-TESESEEEEEESSSHHHHHHHHHHHHHCH-TTSEEEEEEETTGHHHHHHHHHTSCEHSSCHHSSTGGT
T ss_pred hcchhcccccc-cccceEEEecCCchhHHHHHHhhhhhhhc-ccccceeeeccCCccccccccccccccccceeeeeccc
Confidence 99999999997 7766 99999999999999999999 7 89999999998874432 21 1
Q ss_pred C-----CCCchhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 307 A-----GYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 307 ~-----~~~p~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
. +...+.+.++.+++++.|+|+|+.+++++|+++|||++||
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p 274 (306)
T PF00291_consen 229 VPMPFPGELDLELIDEYVGDVVGVSDEEALEAIRELAEREGILVEP 274 (306)
T ss_dssp SSSCTTTTHHHHHHHHETEEEEEEEHHHHHHHHHHHHHHHSB-B-H
T ss_pred CCccchhhhhhhhhhhccccccccchHHHHHHHHHHHHHcCcEEcH
Confidence 1 1122345566778889999999999999999999999986
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D .... |
| >PRK03910 D-cysteine desulfhydrase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-42 Score=331.64 Aligned_cols=246 Identities=21% Similarity=0.195 Sum_probs=202.2
Q ss_pred hhhhhccCCCceeeccccccCCCCeEEEEeCCCCCC--CchhHHHHHHHHHHHHHcCCCCCCCeEEEEeC--CChhHHHH
Q 019047 96 EDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPC--RSVKDRIGYSMITDAEESGDITPGKTVLVEPT--TGNTGLGI 171 (347)
Q Consensus 96 ~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~pt--GSfK~Rga~~~~~~a~~~G~~~~g~~~vv~as--sGN~g~Al 171 (347)
.++...+++|||++++.|++.+|++||+|+|++||+ ||||+|++.+++.++++.|. +.||++| +||||.|+
T Consensus 7 ~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~lnp~g~gs~K~R~~~~~l~~a~~~g~-----~~vvt~g~s~gN~g~al 81 (331)
T PRK03910 7 PRLELAGLPTPLEPLPRLSAALGPDIYIKRDDLTGLALGGNKTRKLEFLLADALAQGA-----DTLITAGAIQSNHARQT 81 (331)
T ss_pred CCccccCCCCCceEhhhhhHhhCCcEEEEeccCCCCCCCchHHHHHHHHHHHHHHcCC-----CEEEEcCcchhHHHHHH
Confidence 457789999999999999988889999999999997 69999999999999999885 4467764 48999999
Q ss_pred HHHHHHcCCcEEEEeCCCCCH--------HHHHHHHhcCCEEEEECCCCChHH-HHHHHHHHHHcCCCce-ecCCCCChH
Q 019047 172 AFVAAVKGYKLIVTMPASTNL--------ERRILLRAFGAEIILTDPEKGLRG-ALDKAEEIVLNTPNAY-MFQQFDNMA 241 (347)
Q Consensus 172 A~aa~~~Gl~~~I~vp~~~~~--------~~~~~l~~~GA~V~~~~~~~~~~~-a~~~a~~~a~~~~~~~-~~~~~~n~~ 241 (347)
|++|+.+|++|+||||+..+. .++..|+.+||+|+.++.+.+..+ +...+.++.++.+..+ +..++.|+.
T Consensus 82 A~~a~~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ 161 (331)
T PRK03910 82 AAAAAKLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVVPAGTDMDAQLEELAEELRAQGRRPYVIPVGGSNAL 161 (331)
T ss_pred HHHHHHhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEeCccchHHHHHHHHHHHHHHcCCceEEECCCCCCch
Confidence 999999999999999998775 456899999999999986422223 3345555666543333 456778888
Q ss_pred HHHHHHHHHHHHHHHhhCC---CCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCcccc---------------
Q 019047 242 NLKIHFDSTGPEIWEDTLG---CVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVIS--------------- 303 (347)
Q Consensus 242 ~~~~g~~ti~~Ei~~ql~~---~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~--------------- 303 (347)
+. .||.+++.||++|+++ .||+||+|+|+||+++|++.+||+.+++++||||||.+++...
T Consensus 162 ~~-~g~~~~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~~a~~~ 240 (331)
T PRK03910 162 GA-LGYVACALEIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLAALGPDIPVIGVTVSRSAAEQEPKVAKLAQATAELL 240 (331)
T ss_pred hH-HHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHc
Confidence 87 4889999999999963 6999999999999999999999999999999999998764321
Q ss_pred CCC--CCCCchhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 304 GEN--AGYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 304 g~~--~~~~p~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
|.. .....+.+.++.+|+.+.|+|+|+++++++|++++||++||
T Consensus 241 g~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~ep 286 (331)
T PRK03910 241 GLPTEIPRADIRLWDDYVGPGYGVPTDEMLEAVKLLARTEGILLDP 286 (331)
T ss_pred CCCccCCcccEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCcccc
Confidence 111 11222345677889999999999999999999999999997
|
|
| >cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-42 Score=327.67 Aligned_cols=237 Identities=22% Similarity=0.222 Sum_probs=195.5
Q ss_pred CceeeccccccCC--CCeEEEEeCCCCCC---CchhHHHHHHHHHHHHHcCCCCCCCeEEEEe--CCChhHHHHHHHHHH
Q 019047 105 TPMVYLNKVTEGC--VGNVAAKLESMEPC---RSVKDRIGYSMITDAEESGDITPGKTVLVEP--TTGNTGLGIAFVAAV 177 (347)
Q Consensus 105 TPLv~~~~l~~~~--g~~Iy~K~E~~~pt---GSfK~Rga~~~~~~a~~~G~~~~g~~~vv~a--ssGN~g~AlA~aa~~ 177 (347)
|||+++++|++.+ +++||+|+|++||+ ||||+|++.+++..++++|. +.|+++ |+||||.|||++|+.
T Consensus 1 TPl~~~~~l~~~~g~~~~l~~K~E~~np~gsfgs~K~R~~~~~l~~a~~~g~-----~~vv~~ggs~GN~g~alA~~a~~ 75 (307)
T cd06449 1 TPIQYLPRLSEHLGGKVEIYAKRDDCNSGLAFGGNKIRKLEYLLPDALAKGA-----DTLVTVGGIQSNHTRQVAAVAAK 75 (307)
T ss_pred CcccchhHHHHhhCCCCcEEEecccccCCCCccchHHHHHHHHHHHHHHcCC-----CEEEECCCchhHHHHHHHHHHHH
Confidence 8999999999877 57999999999998 56799999999999999986 457887 589999999999999
Q ss_pred cCCcEEEEeCCCCC--------HHHHHHHHhcCCEEEEECCCCC--hHHHHHHHHHHHHcC-CCcee-cCCC-CChHHHH
Q 019047 178 KGYKLIVTMPASTN--------LERRILLRAFGAEIILTDPEKG--LRGALDKAEEIVLNT-PNAYM-FQQF-DNMANLK 244 (347)
Q Consensus 178 ~Gl~~~I~vp~~~~--------~~~~~~l~~~GA~V~~~~~~~~--~~~a~~~a~~~a~~~-~~~~~-~~~~-~n~~~~~ 244 (347)
+|++|+||||.+.+ ..|+.+|+.+||+|+.++.+.. ..++++++.+...+. +..++ .+++ +|+.++
T Consensus 76 ~G~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 154 (307)
T cd06449 76 LGLKCVLVQENWVPYSDAVYDRVGNILLSRIMGADVRLVSAGFDIGIRKSFEEAAEEVEAKGGKPYVIPAGGSEHPLGG- 154 (307)
T ss_pred cCCeEEEEecCCCCcccccccccccHHHHHHCCCEEEEECCcchhhHHHHHHHHHHHHHHcCCceEEecCCCCCCcccH-
Confidence 99999999999876 4689999999999999986431 223344444433333 22344 4554 488887
Q ss_pred HHHHHHHHHHHHhhCC---CCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCcccc---------------CCC
Q 019047 245 IHFDSTGPEIWEDTLG---CVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVIS---------------GEN 306 (347)
Q Consensus 245 ~g~~ti~~Ei~~ql~~---~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~---------------g~~ 306 (347)
.||.|++.||++|+.+ .||+||+|+|+||+++|++.++|+.+++++||+|||..+.... |..
T Consensus 155 ~G~~t~~~Ei~~q~~~~~~~~d~vv~~~GtGgt~~G~~~~~~~~~~~~~ii~V~~~~~~~~~~~~~~~~~~~~~~~~g~~ 234 (307)
T cd06449 155 LGYVGFVLEIAQQEEELGFKFDSIVVCSVTGSTHAGLSVGLAALGRQRRVIGIDASAKPEKTKAQVLRIAQAKLAEEGLE 234 (307)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhcCCCCeEEEEEecCchHHHHHHHHHHHHHHHHHcCCC
Confidence 5999999999999964 6999999999999999999999999999999999999874331 111
Q ss_pred CCCCchhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 307 AGYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 307 ~~~~p~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.+..++.+..+.+|+.+.|+|+|+++++++|++++||++||
T Consensus 235 ~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~~Gi~~ep 275 (307)
T cd06449 235 VKEEDVVLDDDYAAPEYGIPNDETIEAIKLCARLEGIITDP 275 (307)
T ss_pred CCcccEEEecCcccCCCCCCCHHHHHHHHHHHHHhCCcccc
Confidence 22345566778899999999999999999999999999997
|
|
| >TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-42 Score=327.07 Aligned_cols=240 Identities=19% Similarity=0.162 Sum_probs=195.7
Q ss_pred ccCCCceeeccccccCCCCeEEEEeCCCCCC--CchhHHHHHHHHHHHHHcCCCCCCCeEEEEe--CCChhHHHHHHHHH
Q 019047 101 LIGRTPMVYLNKVTEGCVGNVAAKLESMEPC--RSVKDRIGYSMITDAEESGDITPGKTVLVEP--TTGNTGLGIAFVAA 176 (347)
Q Consensus 101 ~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~pt--GSfK~Rga~~~~~~a~~~G~~~~g~~~vv~a--ssGN~g~AlA~aa~ 176 (347)
...+|||+++++|++..|++||+|+|++||+ ||||+|++.+++.+++++|. +.|+++ |+||||+|+|++|+
T Consensus 4 ~~~~TPl~~~~~l~~~~g~~l~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~g~-----~~vv~~g~ssGN~g~alA~~a~ 78 (311)
T TIGR01275 4 IPWPTPIQYLPRISREIGAEIYIKRDDLTGLGIGGNKIRKLEYLLADALSKGA-----DTVITVGAIQSNHARATALAAK 78 (311)
T ss_pred CCCCCcceechhhhhhcCCeEEEEeccCcCCCCCchhHHHHHHHHHHHHHcCC-----CEEEEcCCchhHHHHHHHHHHH
Confidence 4468999999999988889999999999998 99999999999999999986 568887 55999999999999
Q ss_pred HcCCcEEEEeCCCC-CHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHH----cCC-CceecCCCCChHHHHHHHHHH
Q 019047 177 VKGYKLIVTMPAST-NLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVL----NTP-NAYMFQQFDNMANLKIHFDST 250 (347)
Q Consensus 177 ~~Gl~~~I~vp~~~-~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~----~~~-~~~~~~~~~n~~~~~~g~~ti 250 (347)
.+|++|+||||.+. +..+..+++.+||+|+.++.. ++++..+.+.++++ +.+ .+++..++.|+.+++ |+.++
T Consensus 79 ~~G~~~~ivvp~~~~~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-g~~~~ 156 (311)
T TIGR01275 79 KLGLDAVLVLREKEELNGNLLLDKLMGAETRVYSAE-EYFEIMKYAEELAEELEKEGRKPYVIPVGGSNSLGTL-GYVEA 156 (311)
T ss_pred HhCCceEEEecCCccCCCCHHHHHHcCCEEEEECch-hhhhhHHHHHHHHHHHHhcCCCeEEECCCCCcHHHHH-HHHHH
Confidence 99999999999865 455677789999999999852 23344444444433 322 234568888888874 77789
Q ss_pred HHHHHHhhCC--CCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCc-c-c-----------cCCCCC-CCchhc
Q 019047 251 GPEIWEDTLG--CVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERS-V-I-----------SGENAG-YVPSIL 314 (347)
Q Consensus 251 ~~Ei~~ql~~--~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~-~-~-----------~g~~~~-~~p~~l 314 (347)
++||++|+++ .+|+||+|+|+||+++|++.+||+.+++++||||||..+. . . .+.... ...+.+
T Consensus 157 ~~EI~~q~~~~~~~D~vv~~vGtGgt~~Gi~~~lk~~~~~~~vigV~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 236 (311)
T TIGR01275 157 VLEIATQLESEVKFDSIVVAAGSGGTIAGLSLGLSILNEDIRPVGVAVGRFGEDMTDKFVNLVKEIAEGLEVKASEVIPE 236 (311)
T ss_pred HHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCcEEEEEecccHHHHHHHHHHHHHHHHHHhCCCCCCCEEE
Confidence 9999999964 7999999999999999999999999999999999986542 1 1 111111 234455
Q ss_pred cccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 315 DVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 315 ~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.++..+..+.|+|+|+++++++|++++||++||
T Consensus 237 ~~~~~~~~~~v~d~e~~~~~~~la~~~gi~vep 269 (311)
T TIGR01275 237 LDDYSGPGYGKPTSEVAEIVKKVASREGIILDP 269 (311)
T ss_pred ECCcccCcCCCCCHHHHHHHHHHHHHhCCccCc
Confidence 567788899999999999999999999999987
|
This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7). |
| >PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=326.56 Aligned_cols=247 Identities=21% Similarity=0.166 Sum_probs=200.6
Q ss_pred hhhhhccCCCceeeccccccCCC--CeEEEEeCCCCCC---CchhHHHHHHHHHHHHHcCCCCCCCeEEEEe--CCChhH
Q 019047 96 EDVTQLIGRTPMVYLNKVTEGCV--GNVAAKLESMEPC---RSVKDRIGYSMITDAEESGDITPGKTVLVEP--TTGNTG 168 (347)
Q Consensus 96 ~~v~~~~~~TPLv~~~~l~~~~g--~~Iy~K~E~~~pt---GSfK~Rga~~~~~~a~~~G~~~~g~~~vv~a--ssGN~g 168 (347)
.++.+.+++|||++++++++.+| .+||+|+|++||+ ||||+|.+.+++..++++|. ..|+++ |+||||
T Consensus 7 ~~~~l~~g~TPL~~~~~l~~~~g~~~~v~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~-----~~vvs~G~s~GN~g 81 (337)
T PRK12390 7 PRYPLTFGPTPIHPLKRLSAHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDALAQGA-----DTLVSIGGVQSNHT 81 (337)
T ss_pred CccccCCCCCcceeHHHHHHHhCCCCeEEEEeCCCCCCCCccchhHHHHHHHHHHHHHcCC-----CEEEEeCCCccHHH
Confidence 46778899999999999988877 7999999999987 78899999999999999996 456776 779999
Q ss_pred HHHHHHHHHcCCcEEEEeCCCCC--------HHHHHHHHhcCCEEEEECCCC--ChHHHHHHHHHHHHcCCCcee-cCCC
Q 019047 169 LGIAFVAAVKGYKLIVTMPASTN--------LERRILLRAFGAEIILTDPEK--GLRGALDKAEEIVLNTPNAYM-FQQF 237 (347)
Q Consensus 169 ~AlA~aa~~~Gl~~~I~vp~~~~--------~~~~~~l~~~GA~V~~~~~~~--~~~~a~~~a~~~a~~~~~~~~-~~~~ 237 (347)
+|+|++|+.+|++|+|||+..++ ..++.+++.+||+|+.++.++ .++++++++.+.+++..+..| +..+
T Consensus 82 ~alA~aa~~~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (337)
T PRK12390 82 RQVAAVAAHLGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRLVPDGFDIGIRKSWEDALEDVRAAGGKPYAIPAG 161 (337)
T ss_pred HHHHHHHHHcCCeEEEEeCCCCCCccchhhccccHHHHHHCCCEEEEeCCCcchhHHHHHHHHHHHHHhCCCceEEeCCc
Confidence 99999999999999999877554 236779999999999998643 244677777777766434333 5444
Q ss_pred CChHH-HHHHHHHHHHHHHHh---hCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccccC---------
Q 019047 238 DNMAN-LKIHFDSTGPEIWED---TLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG--------- 304 (347)
Q Consensus 238 ~n~~~-~~~g~~ti~~Ei~~q---l~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~g--------- 304 (347)
.+.+. ...||.++++||++| +++++|+||+|+|+||+++|++.++|+.++++|||||||..++....
T Consensus 162 ~~~~~~~~~G~~~~a~Ei~~q~~~~~~~~d~vvv~vGtGgtlaGi~~~~k~~~~~~rvigV~~~~~~~~~~~~~~~~~~~ 241 (337)
T PRK12390 162 ASDHPLGGLGFVGFAEEVRAQEAELGFKFDYIVVCSVTGSTQAGMVVGFAADGRARRVIGIDASAKPEQTRAQVLRIARN 241 (337)
T ss_pred CCCCCcccHHHHHHHHHHHHHHHhcCCCCCEEEEecCcchhHHHHHHHHHhcCCCceEEEEEecCchHHHHHHHHHHHHH
Confidence 33321 134899999999998 44579999999999999999999999999999999999988743321
Q ss_pred ----CCCC--C--CchhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 305 ----ENAG--Y--VPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 305 ----~~~~--~--~p~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
...+ . ..+.+..+.+|+.+.|+|+|+++++++|++++||+++|
T Consensus 242 ~a~~~g~~~~~~~~~~~~~~~~~~~~~~vsd~e~~~a~~~la~~~gi~~ep 292 (337)
T PRK12390 242 TAELVELGRDITEDDVVLDERYAGPEYGLPNEGTLEAIRLCARLEGMLTDP 292 (337)
T ss_pred HHHHhCCCCCCChhhEEEecccccCCCCCCCHHHHHHHHHHHHhcCccccc
Confidence 1111 1 12245667899999999999999999999999999987
|
|
| >TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=321.64 Aligned_cols=247 Identities=22% Similarity=0.176 Sum_probs=202.1
Q ss_pred hhhhhhccCCCceeeccccccCCCC--eEEEEeCCCCCC---CchhHHHHHHHHHHHHHcCCCCCCCeEEEEe--CCChh
Q 019047 95 AEDVTQLIGRTPMVYLNKVTEGCVG--NVAAKLESMEPC---RSVKDRIGYSMITDAEESGDITPGKTVLVEP--TTGNT 167 (347)
Q Consensus 95 ~~~v~~~~~~TPLv~~~~l~~~~g~--~Iy~K~E~~~pt---GSfK~Rga~~~~~~a~~~G~~~~g~~~vv~a--ssGN~ 167 (347)
..++.+.+++|||+++++|++.+|. +||+|+|++||+ ||||+|.+.+++.+++++|. +.|+++ ++|||
T Consensus 5 ~~~~~l~~g~TPl~~~~~l~~~~g~~~~l~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~-----~~vvs~ggs~gN~ 79 (337)
T TIGR01274 5 FPRYPLTFGPSPIHPLPRLSQHLGGKVTLYAKREDCNSGLAFGGNKTRKLEYLIPDAQAQGC-----TTLVSIGGIQSNQ 79 (337)
T ss_pred CCccccCCCCCCceEhHhhHHhcCCCceEEEEccCCcCCcCccchHHHHHHHHHHHHHHcCC-----CEEEECCCCcchH
Confidence 3567889999999999999988764 999999999986 77799999999999999996 456766 66999
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCCC--------HHHHHHHHhcCCEEEEECCCCC--hHHHHHHHHHHHHcCC-CceecCC
Q 019047 168 GLGIAFVAAVKGYKLIVTMPASTN--------LERRILLRAFGAEIILTDPEKG--LRGALDKAEEIVLNTP-NAYMFQQ 236 (347)
Q Consensus 168 g~AlA~aa~~~Gl~~~I~vp~~~~--------~~~~~~l~~~GA~V~~~~~~~~--~~~a~~~a~~~a~~~~-~~~~~~~ 236 (347)
|+|+|++|+.+|++|+||||+..+ ..|+.+|+.+||+|+.++.+++ ..+++.++.+.+++.+ ..+++..
T Consensus 80 g~alA~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~i~~ 159 (337)
T TIGR01274 80 TRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLDPDGFDIGHRNSWERALEEVRGAGGKPYPIPA 159 (337)
T ss_pred HHHHHHHHHHcCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEeCCcccccchHHHHHHHHHHHhcCCceEEeCC
Confidence 999999999999999999998643 5799999999999999986431 2356667776666653 3355555
Q ss_pred CC--ChHHHHHHHHHHHHHHHHhh---CCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccccC-------
Q 019047 237 FD--NMANLKIHFDSTGPEIWEDT---LGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG------- 304 (347)
Q Consensus 237 ~~--n~~~~~~g~~ti~~Ei~~ql---~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~g------- 304 (347)
+. ++... .|+.++++||.+|+ +.+||+||+|+|+||+++|++.++++..++++||||||.++.....
T Consensus 160 ~~~~~~~~~-~G~~~~~~Ei~eq~~~~~~~~D~vvv~vGtGgt~aGl~~~~~~~~~~~~vigV~~~~~~~~~~~~~~~~~ 238 (337)
T TIGR01274 160 GCSDHPLGG-LGFVGFAFEVREQEGELGFKFDYVVVCSVTGSTQAGMVAGFAADGRKDRVIGIDASATPEQTRAQILRIA 238 (337)
T ss_pred CCCCCccch-hHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHH
Confidence 43 34444 48999999999995 3479999999999999999999999999999999999998743311
Q ss_pred ------CC--CCCC--chhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 305 ------EN--AGYV--PSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 305 ------~~--~~~~--p~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.. .... .+.+..+.+++.+.|+|+|+++++++|+++|||+++|
T Consensus 239 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~eGi~~ep 291 (337)
T TIGR01274 239 RNTAEKIGLERDITEDDVVLDTRFAYPEYGVPNEGTLEAIRLCAKMEGVLTDP 291 (337)
T ss_pred HHHHHHhCCCCCcCccceEEeccccCCCcCCCCHHHHHHHHHHHHhcCCccCc
Confidence 11 1111 1356667789999999999999999999999999987
|
This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family. |
| >COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=304.70 Aligned_cols=279 Identities=19% Similarity=0.237 Sum_probs=224.1
Q ss_pred ccccCCCCCCCCcccchhhHHHHHHHhccCCCCchhhhh----hhcc-CCCceeeccccccCCCCeEEEEeCCCCCCCch
Q 019047 60 AKAGAAASSSSSSLYATSTREIEKEEGNDFHGVNIAEDV----TQLI-GRTPMVYLNKVTEGCVGNVAAKLESMEPCRSV 134 (347)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v----~~~~-~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSf 134 (347)
.+...+.....|+...+...|+++.|......++...++ ..+. +||||+.+++|++.+|++||+|+|++|+||+|
T Consensus 7 g~fG~fGG~yVpE~Lmpal~eLe~ay~~~~~D~~F~~el~~~l~~Y~GRptpLy~a~~Lt~~~gakiyLKREDL~HtGAH 86 (396)
T COG0133 7 GYFGEFGGQYVPETLMPALEELEKAYEKAKNDPEFQAELDYLLKDYAGRPTPLYFAERLTEHLGAKIYLKREDLNHTGAH 86 (396)
T ss_pred CcccccCCEechHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCChhHHHHHHHHhhCceEEEehhhhcccchh
Confidence 344557777788888899999999998766665544443 2234 45999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCC-C--CHHHHHHHHhcCCEEEEEC-C
Q 019047 135 KDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS-T--NLERRILLRAFGAEIILTD-P 210 (347)
Q Consensus 135 K~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~-~--~~~~~~~l~~~GA~V~~~~-~ 210 (347)
|++.+..++..|++.|+ ++++.++++|+||.|.|.+|++||++|+|||... + ...++.+|+.+||+|+.+. +
T Consensus 87 KiNN~lGQ~LLAkrMGK----~riIAETGAGQHGVAtAta~A~fgl~C~iYMGa~Dv~RQ~~NVfRM~LlGA~V~pV~sG 162 (396)
T COG0133 87 KINNALGQALLAKRMGK----TRIIAETGAGQHGVATATAAALFGLECVIYMGAEDVERQALNVFRMRLLGAEVVPVTSG 162 (396)
T ss_pred hHHHHHHHHHHHHHhCC----ceEEeecCCCcccHHHHHHHHHhCCceEEEecchhhhhcccchhhhhhcCceEEEeccC
Confidence 99999999999999998 7899999999999999999999999999999963 2 3445778999999999886 5
Q ss_pred CCChHHHHHHHHHHHH-cCCCceec-------CCCCChHHHHHHHHHHHHHHHHhh----CCCCCEEEEecCcchHHHHH
Q 019047 211 EKGLRGALDKAEEIVL-NTPNAYMF-------QQFDNMANLKIHFDSTGPEIWEDT----LGCVDIFVAAIGTGGTITGT 278 (347)
Q Consensus 211 ~~~~~~a~~~a~~~a~-~~~~~~~~-------~~~~n~~~~~~g~~ti~~Ei~~ql----~~~~D~vv~pvG~Gg~~~Gi 278 (347)
+.+++||+.+|.+.+. +..+.+|+ ++| |..+...|+.||.|..+|+ +.-||.||.|||+|||+.|+
T Consensus 163 s~TLKDA~neAlRdWvtn~~~ThY~iGsa~GPHPy--P~iVRdFQ~vIG~E~k~Qile~egrlPD~vvACVGGGSNAiG~ 240 (396)
T COG0133 163 SGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPY--PTIVRDFQSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGI 240 (396)
T ss_pred CchHHHHHHHHHHHHHhccccceEEEeeccCCCCc--hHHHHHHHHHHhHHHHHHHHHHhCCCCCeEEEeccCCcchhhh
Confidence 6689999999977554 44566776 444 5555668999999999986 34699999999999999999
Q ss_pred HHHHHhcCCCCeEEEEcCCCCccccC---------------------------------------CCCCCCchhcc--cc
Q 019047 279 GRFLKMMNKEIKVVGVEPAERSVISG---------------------------------------ENAGYVPSILD--VQ 317 (347)
Q Consensus 279 ~~~~k~~~~~~~vigVep~~~~~~~g---------------------------------------~~~~~~p~~l~--~~ 317 (347)
...|.. .+++++||||+.+....++ ..|+..|..-+ ..
T Consensus 241 F~~Fi~-d~~V~LiGvEaaG~Gi~t~~HaAtl~~G~~GvlhG~~tyllQd~~GQi~e~hSISAGLDYPgVGPeha~l~~~ 319 (396)
T COG0133 241 FHPFID-DESVRLIGVEAAGKGIETGKHAATLTAGRPGVLHGMKTYLLQDEDGQILESHSISAGLDYPGVGPEHAYLKDI 319 (396)
T ss_pred cccccC-CCCceEEEeccCcCccCCCccceeecCCCceeeecccceeeEcCCCCEeeeeeeccCCCCCCCChhHHHHHhc
Confidence 988765 3689999999987533332 11233333222 22
Q ss_pred ccCeEEEeCHHHHHHHHHHHHHhcCccc
Q 019047 318 LLDEVIKVTNDEAVNMARRLALEEGLLV 345 (347)
Q Consensus 318 ~vd~~v~Vsd~ea~~a~~~La~~eGI~~ 345 (347)
.--+.+.|+|+||++|.+.|.+.|||+-
T Consensus 320 gRa~y~~itD~EAl~af~~L~r~EGIIP 347 (396)
T COG0133 320 GRAEYVSITDEEALEAFQLLSRLEGIIP 347 (396)
T ss_pred CceeEEecChHHHHHHHHHHHHhcCcch
Confidence 3346899999999999999999999973
|
|
| >KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=307.27 Aligned_cols=292 Identities=21% Similarity=0.179 Sum_probs=224.0
Q ss_pred cccccccccccccccC-----CCCCCCCcccchhhHHHHHHHhc---cCCCCchhhhhh-hccCCCceeeccccccCC--
Q 019047 49 TRRRILPIVASAKAGA-----AASSSSSSLYATSTREIEKEEGN---DFHGVNIAEDVT-QLIGRTPMVYLNKVTEGC-- 117 (347)
Q Consensus 49 ~r~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~-~~~~~TPLv~~~~l~~~~-- 117 (347)
..|+++..++++++.| +.....|+....-..||+++|.. ..++.+....++ -.+++|||+++++|.+.+
T Consensus 58 ~~~~~l~~d~~~~~~P~r~gkfgg~yvPE~L~h~l~ELek~f~~~~~d~df~ee~~eiy~y~gRpspL~~AkRLte~~q~ 137 (477)
T KOG1395|consen 58 PQWYNLVADLSVKPPPPRFGKFGGPYVPEALAHCLPELEKQFYTAERDEDFWEEFLEIYKYLGRPSPLIRAKRLTEHCQT 137 (477)
T ss_pred HHHHhccCchhhcCCCccccccCCccChHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHcCCCchhHHHHHHHHHhCC
Confidence 4899988888777766 45555555566655699999966 344445555566 456789999999999955
Q ss_pred CCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCC---CCHHH
Q 019047 118 VGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS---TNLER 194 (347)
Q Consensus 118 g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~---~~~~~ 194 (347)
|++||+|+|++||+||||++.|..+++.|++.|+ +++|.++++|+||.|+|.+|++||++|+|||..+ ..+.+
T Consensus 138 ga~IylKrEdlnh~GsHKiNnav~QallakrlGk----knviaETGAGQhGvatA~a~a~FGl~C~v~mgAed~~rqaln 213 (477)
T KOG1395|consen 138 GARIYLKREDLNHTGSHKINNAVAQALLAKRLGK----KNVIAETGAGQHGVATATACAKFGLDCTVYMGAEDYRRQALN 213 (477)
T ss_pred CCEEEEEecCCCccccCCcccHHHHHHHHHHhcc----cceeeccCCCccchHHHHHHHHhCCceEEEechhHHHHHHHH
Confidence 6899999999999999999999999999999998 7889999999999999999999999999999974 46678
Q ss_pred HHHHHhcCCEEEEECC-CCChHHHHHHHHHHHHcC-CCceecC-----CCCChHHHHHHHHHHHHHHHHhh----CCCCC
Q 019047 195 RILLRAFGAEIILTDP-EKGLRGALDKAEEIVLNT-PNAYMFQ-----QFDNMANLKIHFDSTGPEIWEDT----LGCVD 263 (347)
Q Consensus 195 ~~~l~~~GA~V~~~~~-~~~~~~a~~~a~~~a~~~-~~~~~~~-----~~~n~~~~~~g~~ti~~Ei~~ql----~~~~D 263 (347)
+-+||.+||+|+.+.+ ..+++++..++.++.-.+ .-.+|+. ++--+..+...+.+|+-|-..|. ++.||
T Consensus 214 vfrmrllGAkV~pv~sGt~tLrda~sea~r~wvt~~ett~y~~gs~~gphp~pt~vr~fhsvIg~Et~~Q~me~~g~~PD 293 (477)
T KOG1395|consen 214 VFRMRLLGAKVHPVTSGTRTLRDATSEAGRLWVTNSETTHYAAGSAIGPHPYPTVVRTFHSVIGKETKIQQMEKFGKLPD 293 (477)
T ss_pred HHHHHHhCceEeecCCCceehhcccchhhhhhhhhhheeeeeecccCCCCCcHHHHHHHHHHHhHHHHHHHHHHhCCCCC
Confidence 8899999999999874 446788888887765432 1234432 22224444457889999987775 45799
Q ss_pred EEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccccC--------C------------------------------
Q 019047 264 IFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG--------E------------------------------ 305 (347)
Q Consensus 264 ~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~g--------~------------------------------ 305 (347)
.||.|+|+|+|.+|+...|... ..++.|+||..+...-++ +
T Consensus 294 ~vvaCvGGGSN~~Glf~pF~~d-k~v~~igveaagdg~dtp~hsatltagd~Gv~hG~~ty~lq~~dGqi~~phsIsAGL 372 (477)
T KOG1395|consen 294 AVVACVGGGSNSAGLFSPFIRD-KSVGMIGVEAAGDGVDTPKHSATLTAGDVGVFHGVTTYVLQDTDGQIFDPHSISAGL 372 (477)
T ss_pred eEEEeccCCCccccccchhhcc-chhheeeeeecccccCCcchhceeecccccccccceeeeeeccCCccccCCccccCC
Confidence 9999999999999999988764 468899998765322111 0
Q ss_pred -CCCCCch--hccccccCeEEEeCHHHHHHHHHHHHHhcCccc
Q 019047 306 -NAGYVPS--ILDVQLLDEVIKVTNDEAVNMARRLALEEGLLV 345 (347)
Q Consensus 306 -~~~~~p~--~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~ 345 (347)
.++..|. .+...+..++++|+|.|++++.++|++.|||+-
T Consensus 373 dYpGvgPels~~k~~grae~isitd~eclegfk~~srlEGIIP 415 (477)
T KOG1395|consen 373 DYPGVGPELSHLKETGRAEFISITDAECLEGFKQLSRLEGIIP 415 (477)
T ss_pred CCCCCChhHHHHHhcCceeEEecChHHHHHHHHHHHHhccccc
Confidence 1122221 122233457999999999999999999999974
|
|
| >PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-39 Score=310.50 Aligned_cols=244 Identities=21% Similarity=0.242 Sum_probs=193.8
Q ss_pred hhhhhccCCCceeeccccccCCCCeEEEEeCCCCCC--CchhHHHHHHHHHHHHHcCCCCCCCeEEE--EeCCChhHHHH
Q 019047 96 EDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPC--RSVKDRIGYSMITDAEESGDITPGKTVLV--EPTTGNTGLGI 171 (347)
Q Consensus 96 ~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~pt--GSfK~Rga~~~~~~a~~~G~~~~g~~~vv--~assGN~g~Al 171 (347)
+++.+..++|||++++++++..|++||+|+|++||+ ||||+|++.+++..+.++|. ++ |+ ++|+||||+|+
T Consensus 13 ~~~~l~~~~TPl~~~~~l~~~~g~~v~~K~E~l~~~~~gg~K~R~~~~~l~~a~~~G~----~~-vv~~~~ssGN~g~al 87 (329)
T PRK14045 13 PRVELIPWETPIQYLPNISRELGADVYVKRDDLTGLGIGGNKIRKLEYLLGDALSRGA----DV-VITVGAVHSNHAFVT 87 (329)
T ss_pred CCcccCCCCCCcccchhhHHHhCCeEEEEcccccCCCCCcchHHHHHhHHHHHHHcCC----CE-EEEeCccHHHHHHHH
Confidence 567888899999999999987889999999999986 89999999999999999986 33 44 68999999999
Q ss_pred HHHHHHcCCcEEEEeCCCCCHH-HHHHHHhcCCEEEEECCCCC---hHHHHHHHHHHHHcCCCcee-cCCCCChHHHHHH
Q 019047 172 AFVAAVKGYKLIVTMPASTNLE-RRILLRAFGAEIILTDPEKG---LRGALDKAEEIVLNTPNAYM-FQQFDNMANLKIH 246 (347)
Q Consensus 172 A~aa~~~Gl~~~I~vp~~~~~~-~~~~l~~~GA~V~~~~~~~~---~~~a~~~a~~~a~~~~~~~~-~~~~~n~~~~~~g 246 (347)
|++|+.+|++|+||||.+.+.. +..+++.+||+|+.++...+ .+.+.+.+.+++++.+..++ ..++.|+.++. |
T Consensus 88 A~~a~~~G~~~~ivvp~~~~~~~~~~l~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~n~~~~~-g 166 (329)
T PRK14045 88 GLAAKKLGLDAVLVLRGKEELKGNYLLDKIMGIETRVYEAKDSFELMKYAEEVAEELKGEGRKPYIIPPGGASPVGTL-G 166 (329)
T ss_pred HHHHHHcCCeEEEEEeCCCCCCcCHHHHHHCCCEEEEECCCcccchHHHHHHHHHHHHhcCCCEEEECCCCCchhHHH-H
Confidence 9999999999999999875443 55677999999998874222 23455666666665544555 46677888875 6
Q ss_pred HHHHHHHHHHhhC---CCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCC-ccc--------------cCCCCC
Q 019047 247 FDSTGPEIWEDTL---GCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAER-SVI--------------SGENAG 308 (347)
Q Consensus 247 ~~ti~~Ei~~ql~---~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~-~~~--------------~g~~~~ 308 (347)
+.+...||++|+. .++|+||+|+|+||+++|++.++|..+++++||||+|... ..+ .|...+
T Consensus 167 ~~~~~~EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 246 (329)
T PRK14045 167 YVRAVGEIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAVGSFGEKMKEKVKNLVKKTKELLGVKVK 246 (329)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 5555559999996 3799999999999999999999999999999999999762 111 111222
Q ss_pred C-CchhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 309 Y-VPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 309 ~-~p~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
. .+. +.+..+|++..++ +|++++++.|+++|||++||
T Consensus 247 ~~~~~-~~d~~~~~y~~~~-~e~~~~~~~la~~eGi~ldp 284 (329)
T PRK14045 247 VQEPE-LYDYSFGEYGKIT-KEVAKLIRSVGTMEGLILDP 284 (329)
T ss_pred ccceE-ecccccCCCCCCC-HHHHHHHHHHHHhhCCCCcc
Confidence 2 222 2333458888888 69999999999999999997
|
|
| >COG0498 ThrC Threonine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=295.46 Aligned_cols=257 Identities=21% Similarity=0.122 Sum_probs=216.3
Q ss_pred HHHHHHhccCCCCchhhhhhhccCCCceeeccccccCCCC---eEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCC
Q 019047 80 EIEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVG---NVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGK 156 (347)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~v~~~~~~TPLv~~~~l~~~~g~---~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~ 156 (347)
.+|+ |.+++|.. ....+....+.||+++.+++...+|. ++|+|.|+.|||||||||++..++..+.+.|.
T Consensus 54 ~~~~-~~~~lp~~-~~~~~~l~eg~tp~~~~~~~~~~l~~~~~~lyvk~~~~nPT~SFKDrg~~~~~~~~~~~g~----- 126 (411)
T COG0498 54 LAWR-YLELLPVG-EIPAVSLGEGGTPLYKAPALAAPLGVLNDNLYVKELGHNPTGSFKDRGMTVLVSLAKELGA----- 126 (411)
T ss_pred hHHH-HHHHCCCC-CcchhhhhhccCccccCcccchhhccCCcceehhhhccCCCcchhhhhHHHHHHHHHHhcC-----
Confidence 3444 88899876 45677899999999999888887773 59999999999999999999999999999984
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCC-CCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecC
Q 019047 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS-TNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQ 235 (347)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~-~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~ 235 (347)
.+|+++|+||+|.|+|.++++.|++|+|++|++ ++..|+.+|..+|++|+.+++ ++|++.+.+.+++++. ++++..
T Consensus 127 ~~I~~ASSGnTgAs~aaya~rag~~v~Vl~P~g~vs~~k~~q~~~~ga~~i~v~G--~fDda~~~vk~~~~~~-~~~~~~ 203 (411)
T COG0498 127 KTILCASSGNTGASAAAYAARAGLKVFVLYPKGKVSPGKLAQMLTLGAHVIAVDG--NFDDAQELVKEAANRE-GLLSAV 203 (411)
T ss_pred CEEEEeCCchHHHHHHHHhccCCCeEEEEecCCCCCHHHHHHHHhcCCEEEEEcC--cHHHHHHHHHHHHhhC-Cceeec
Confidence 359999999999999999999999999999998 999999999999999999997 4689999999999865 557777
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhC-CCCCEEEEecCcchHHHHHHHHHHhcCCC------CeEEEEcCCCCccccC----
Q 019047 236 QFDNMANLKIHFDSTGPEIWEDTL-GCVDIFVAAIGTGGTITGTGRFLKMMNKE------IKVVGVEPAERSVISG---- 304 (347)
Q Consensus 236 ~~~n~~~~~~g~~ti~~Ei~~ql~-~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~------~~vigVep~~~~~~~g---- 304 (347)
...|+..+ .||+|+++||++|++ +.||+|++|+|+||++.|++.++++..+. +++.+|+++++.....
T Consensus 204 nsiNp~rl-egq~t~~fe~~~ql~~~~p~~v~vPvGn~gni~a~~~g~~~~~~~g~i~~~p~~~~vqaeg~~p~~~~~~~ 282 (411)
T COG0498 204 NSINPYRL-EGQKTYAFEIAEQLGWKAPDHVVVPVGNGGNLLAIYKGFKEGLPIGKIDKAPNMNGVQAEGFSPGVYAWKE 282 (411)
T ss_pred cccCHHHh-hhhhhhHhHHHHHhCCCCCCeEEEeCCchHHHHHHHHHHHhcccccchhcCchhhhhhHhhccchhhhccc
Confidence 77889887 599999999999998 48999999999999999999999997543 6778888887643321
Q ss_pred C--CCCC--------Cchhc------cccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 305 E--NAGY--------VPSIL------DVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 305 ~--~~~~--------~p~~l------~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
+ .+.. .|.++ .++....++.|||+|+.++.+.|++.|||++.|
T Consensus 283 ~~~~~~T~a~am~I~~p~n~~r~l~a~~es~g~~~~vsdeEi~~a~~~l~~~eG~~~eP 341 (411)
T COG0498 283 GRETPETIAPAMDIGNPSNWERALFALRESGGLAVAVSDEEILEAIKLLAEREGILIEP 341 (411)
T ss_pred ccccccccccccccCCCCCHHHHHHHHHhcCCceEEeCHHHHHHHHHHHHHhCCcccCc
Confidence 1 1111 12221 122235599999999999999999999999987
|
|
| >PRK09225 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.9e-26 Score=227.83 Aligned_cols=227 Identities=15% Similarity=0.112 Sum_probs=173.2
Q ss_pred CCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHH---HHHHHHHcCCCCCCCeEEEEeCCChhHHHH-HHHHHHcC
Q 019047 104 RTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYS---MITDAEESGDITPGKTVLVEPTTGNTGLGI-AFVAAVKG 179 (347)
Q Consensus 104 ~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~---~~~~a~~~G~~~~g~~~vv~assGN~g~Al-A~aa~~~G 179 (347)
.+||+++++ ++|+.--..+||||||||++.. ++.++++ +. ...|+++|+||+|.|+ |.++...|
T Consensus 88 ~~pl~~l~~-------~~~~lELfhGPT~sFKD~a~~~l~~~l~~a~~-~~----~~~Il~ATSGdtG~Aa~aaf~~~~g 155 (462)
T PRK09225 88 IAPLVQLDD-------NLYVLELFHGPTLAFKDFALQFLAQLLEYVLK-GE----KITILGATSGDTGSAAAEAFRGKPN 155 (462)
T ss_pred ccceEEeCC-------CceeHhhccCCccchhhhHHHHHHHHHHHHHh-CC----CcEEEEcCCCcHHHHHHHHHhCcCC
Confidence 478877642 5888777788999999999988 7777877 42 4679999999999999 78889999
Q ss_pred CcEEEEeCCC-CCHHHHHHHHhc-CCEE--EEECCCCChHHHHHHHHHHHHcC-----CCceecCCCCChHHHHHHHHHH
Q 019047 180 YKLIVTMPAS-TNLERRILLRAF-GAEI--ILTDPEKGLRGALDKAEEIVLNT-----PNAYMFQQFDNMANLKIHFDST 250 (347)
Q Consensus 180 l~~~I~vp~~-~~~~~~~~l~~~-GA~V--~~~~~~~~~~~a~~~a~~~a~~~-----~~~~~~~~~~n~~~~~~g~~ti 250 (347)
++|+|++|++ ++..++.+|..+ |++| +.+++ +++++...+.++..+. -+++..+. .|+..+ .||.++
T Consensus 156 i~~~V~~P~g~vs~~q~~Qm~t~~g~nv~vi~V~G--~fDD~q~~vk~~~~d~~~~~~~~l~saNS-iN~~Ri-~gQ~~y 231 (462)
T PRK09225 156 VRVVILYPKGKVSPVQEKQMTTLQGDNIHVVAVEG--NFDDCQALVKAAFNDEELKEKLKLSSANS-INIGRL-LAQIVY 231 (462)
T ss_pred CEEEEEEcCCCCCHHHHHHHHhhcCCCeEEEEeCC--CHHHHHHHHHHHhhchhhhhcCceEEEec-cCHHHH-HHHHHH
Confidence 9999999996 999999999999 9988 45554 5788888888776541 13444555 478887 599999
Q ss_pred HHHHHHhhCC---CCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccc-----cCCC-----CC--------C
Q 019047 251 GPEIWEDTLG---CVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVI-----SGEN-----AG--------Y 309 (347)
Q Consensus 251 ~~Ei~~ql~~---~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~-----~g~~-----~~--------~ 309 (347)
++|+++|+.+ .||.|++|+|+||++.|.+.+.+.-.|-.|+|+++- .+..+ +|.. +. .
T Consensus 232 yfea~~ql~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~A~n-~n~~l~~~~~~G~y~~~~~~~T~s~amdI~ 310 (462)
T PRK09225 232 YFYAYLQLGIEAGEKVNFSVPSGNFGNILAGYYAKKMGLPIKRLIVATN-ENDVLTRFLKTGVYDPRPTVATLSPAMDIS 310 (462)
T ss_pred HHHHHHHhccccCCCCEEEEECCcHHHHHHHHHHHHcCCCcceEEEEec-CChHHHHHHHcCCCccCCCCCCcCchhhcC
Confidence 9999999964 489999999999999999988444445569999983 33222 2310 00 1
Q ss_pred Cchhccc------------------c---ccC---------------eEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 310 VPSILDV------------------Q---LLD---------------EVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 310 ~p~~l~~------------------~---~vd---------------~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.|.++.+ . .-. .++.|+|+|+.++++++++++|+++.|
T Consensus 311 ~psn~eR~l~~~~~~~~~~v~~~m~~l~~~gg~~~~~~~~~~~~~~f~a~~vsD~ei~~ai~~~~~~~G~~~dP 384 (462)
T PRK09225 311 VSSNFERLLFDLLGRDAAAVEELMEDLEEKGEYDLSDEELAALREDFSAGSVSDEETLATIREVYEEYGYLIDP 384 (462)
T ss_pred CCCcHHHHHHHhcCCcHHHHHHHHHHHHHcCCcccCHHHHHHhhhcceEEEECHHHHHHHHHHHHHhCCEEECc
Confidence 1222111 0 001 578999999999999999999999877
|
|
| >cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-25 Score=221.13 Aligned_cols=229 Identities=15% Similarity=0.093 Sum_probs=174.5
Q ss_pred CceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHH---HHHHHHcCCCCCCCeEEEEeCCChhHHH-HHHHHHHcCC
Q 019047 105 TPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSM---ITDAEESGDITPGKTVLVEPTTGNTGLG-IAFVAAVKGY 180 (347)
Q Consensus 105 TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~---~~~a~~~G~~~~g~~~vv~assGN~g~A-lA~aa~~~Gl 180 (347)
+||.++.+ ++|++....+||||||||++..+ +.+++++. .+...|+++|+||+|.| ++.++...|+
T Consensus 88 ~pl~~l~~-------~~~~lELfhGPT~sFKD~a~~~l~~l~~~~~~~~---~~~~~Il~ATSGdTG~Aa~aaf~~~~gi 157 (460)
T cd01560 88 APLVQLGD-------NLYVLELFHGPTLAFKDMALQFLGRLLEYFLKRR---NERITILVATSGDTGSAAIEGFRGKPNV 157 (460)
T ss_pred cceEEeCC-------CcEEeeeeeCCCcchHHhHHHHHHHHHHHHHHhc---CCCeEEEEcCCCcHHHHHHHHHhCcCCC
Confidence 78877642 68999999999999999999976 55665541 12467999999999999 4888999999
Q ss_pred cEEEEeCCC-CCHHHHHHHHhcCC---EEEEECCCCChHHHHHHHHHHHHcC-----CCceecCCCCChHHHHHHHHHHH
Q 019047 181 KLIVTMPAS-TNLERRILLRAFGA---EIILTDPEKGLRGALDKAEEIVLNT-----PNAYMFQQFDNMANLKIHFDSTG 251 (347)
Q Consensus 181 ~~~I~vp~~-~~~~~~~~l~~~GA---~V~~~~~~~~~~~a~~~a~~~a~~~-----~~~~~~~~~~n~~~~~~g~~ti~ 251 (347)
+|+|++|++ +++.++.+|..+|+ +|+.+++ +++++...+.++..+. -+++-.+. .|+..+ .+|.+++
T Consensus 158 ~v~Vl~P~g~vs~~Q~~Qm~t~g~~Nv~vi~V~G--~fDd~q~~vk~~~~d~~~~~~~~l~saNS-iN~~Ri-~~Q~~yy 233 (460)
T cd01560 158 DVVVLYPKGGVSPIQELQMTTLPADNVHVVAVEG--DFDDCQSLVKALFADEDFNKKLKLSSANS-INWARI-LAQIVYY 233 (460)
T ss_pred EEEEEEcCCCCCHHHHHHHHhhCCCceEEEEEcC--CHHHHHHHHHHHhcChhhHhcceEEEEec-cCHHHH-HHHHHHH
Confidence 999999996 99999999999996 7888876 4788888887776541 13444444 477777 5999999
Q ss_pred HHHHHhhCC----CCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCc---c-ccCCC-C-----C--------C
Q 019047 252 PEIWEDTLG----CVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERS---V-ISGEN-A-----G--------Y 309 (347)
Q Consensus 252 ~Ei~~ql~~----~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~---~-~~g~~-~-----~--------~ 309 (347)
+|+++|+.+ .+|.|+||+|+||++.|.+.+.+.-.|-.++|+++..+.- + .+|.. + . -
T Consensus 234 f~a~~ql~~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~a~n~n~il~~~~~~G~y~~~~~~~~T~spamdI~ 313 (460)
T cd01560 234 FYAYLQLLKRGEGEKVEFSVPTGNFGNILAGYYAKKMGLPIKKLIVATNENDVLRRFFKTGRYDRRESLKQTLSPAMDIL 313 (460)
T ss_pred HHHHHHhccccCCCCCEEEEECCcHHHHHHHHHHHHcCCCCccEEEEeCCChHHHHHHHcCCCcCCCCCCCCcCchhhcC
Confidence 999999964 5899999999999999999987665566789998654431 1 13311 0 0 0
Q ss_pred Cchhcc---cc--ccC-------------------------------eEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 310 VPSILD---VQ--LLD-------------------------------EVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 310 ~p~~l~---~~--~vd-------------------------------~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.|.++. .. .-| .++.|+|+|+.++++.+++++|+++.|
T Consensus 314 ~psn~eR~L~~l~~~~g~~~~~~m~~~~~~g~~~~~~~~l~~~~~~f~a~~vsD~ei~~~i~~~~~~~G~~vdP 387 (460)
T cd01560 314 KSSNFERLLFLLAGRDRTKVKMLMEEFEATGFLSLPKEELKKLREDFSSGSVSDEETLETIREVYEETGYLIDP 387 (460)
T ss_pred CCCCHHHHHHHHhCCCHHHHHHHHHHHHhcCCEecCHHHHHhhhccceEEEECHHHHHHHHHHHHHhcCEEECc
Confidence 111111 10 001 468999999999999999999999876
|
The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins. |
| >COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-24 Score=202.23 Aligned_cols=247 Identities=19% Similarity=0.159 Sum_probs=194.1
Q ss_pred hhhhhhccCCCceeeccccccCCCCeEEEEeCCCCC--CCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCC--ChhHHH
Q 019047 95 AEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEP--CRSVKDRIGYSMITDAEESGDITPGKTVLVEPTT--GNTGLG 170 (347)
Q Consensus 95 ~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~p--tGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~ass--GN~g~A 170 (347)
.+|+.....+||+..++++++.+|.+||+|+|+..+ .|.+|+|...+.+.+|..+|. +++|++++ .||.++
T Consensus 6 f~R~~l~~~pTPiq~L~rls~~lg~eiYiKRDD~t~l~~gGNK~RKLefll~eal~~g~-----dTlvT~GgiQSNh~r~ 80 (323)
T COG2515 6 FPRMELIFGPTPIQKLPRLSAHLGVEIYIKRDDLTGLAFGGNKIRKLEFLLGEALRKGA-----DTLVTYGGIQSNHVRQ 80 (323)
T ss_pred CCccccCCCCChhhhHHHHHHhcCeEEEEEcccccccccCccHHHHHHHHHhhhhhcCC-----cEEEEecccchhHHHH
Confidence 356777888999999999999999999999999964 399999999999999999996 55788776 799999
Q ss_pred HHHHHHHcCCcEEEEeCCCCC----HHHHHHHHhcCCEEEEECCCCCh--HHHHHHHHHHHHcCCCceec--CCCCChHH
Q 019047 171 IAFVAAVKGYKLIVTMPASTN----LERRILLRAFGAEIILTDPEKGL--RGALDKAEEIVLNTPNAYMF--QQFDNMAN 242 (347)
Q Consensus 171 lA~aa~~~Gl~~~I~vp~~~~----~~~~~~l~~~GA~V~~~~~~~~~--~~a~~~a~~~a~~~~~~~~~--~~~~n~~~ 242 (347)
+|++|+++|++|+.++..... ..++.+...+|++++.++...++ +.-.+...+..++.++..|+ .+..|+.-
T Consensus 81 tAavA~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~~e~~~~~g~kpyvIp~GG~~~~g 160 (323)
T COG2515 81 TAAVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEELAEEVRKQGGKPYVIPEGGSSPLG 160 (323)
T ss_pred HHHHHHhcCCcEEEEEeccccccccccchhhhhhcCceEEEecCCCChhhchhhHHHHHHHHhcCCCCcEeccCCcCccc
Confidence 999999999999999887541 22566667899999999876554 33444555555544444443 33334433
Q ss_pred HHHHHHHHHHHHHHhhC--CCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccccC-------------CCC
Q 019047 243 LKIHFDSTGPEIWEDTL--GCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG-------------ENA 307 (347)
Q Consensus 243 ~~~g~~ti~~Ei~~ql~--~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~g-------------~~~ 307 (347)
..||...+.||.+|.. -++|.||+++|+|||.+|+..++....++++|||+.......... ...
T Consensus 161 -~lGyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~ViG~~v~~~~~~~~~qv~~L~~~~a~~~~~ 239 (323)
T COG2515 161 -ALGYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVIGIDVSADPEKLKEQVLNLAQATAELLGL 239 (323)
T ss_pred -cccHHHHHHHHHHHHhhccCCCEEEEeCCCcchHHHHHHHhhhccCCCceEEEeecCCHHHHHHHHHHHHHHHHHHcCC
Confidence 3599999999999987 489999999999999999999999999999999998876532211 111
Q ss_pred -CCCchhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 308 -GYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 308 -~~~p~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
....+.++.++.-..+.+..+|-+++.+.+++.|||+.-|
T Consensus 240 ~~~~~v~~~~dy~~~~Yg~p~~e~~e~i~~~~~~eGillDp 280 (323)
T COG2515 240 GSEADVLLSDDYHHPGYGKPNEEDIEAIKLLARLEGILLDP 280 (323)
T ss_pred CCCceEEEEecccCCccCCcCHHHHHHHHHHHHhhCccccc
Confidence 2333445556666667888889999999999999998765
|
|
| >COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-23 Score=191.21 Aligned_cols=249 Identities=22% Similarity=0.281 Sum_probs=203.0
Q ss_pred hhhhhccCCCceeecccc----ccC----CCCeEEEEeCCCCC-CCchhHHHHHHHHHH-----HHHcCCCCCCCe----
Q 019047 96 EDVTQLIGRTPMVYLNKV----TEG----CVGNVAAKLESMEP-CRSVKDRIGYSMITD-----AEESGDITPGKT---- 157 (347)
Q Consensus 96 ~~v~~~~~~TPLv~~~~l----~~~----~g~~Iy~K~E~~~p-tGSfK~Rga~~~~~~-----a~~~G~~~~g~~---- 157 (347)
..-..++..+||++++.+ +++ +..++|+|+++.-| +||.|.||..+-+.. |.+.|.+.-.+.
T Consensus 70 T~~~~GiIES~lv~i~~mq~~Le~~Y~~~i~G~llLK~DshLpIsGSIKARGGIYEVL~hAE~LAle~Gll~~~DDYs~L 149 (443)
T COG3048 70 TAATGGIIESPLVEIPAMQKRLEKEYQQPIPGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLEDDYSIL 149 (443)
T ss_pred ccccCCeeccchhhhHHHHHHHHHHhcCCCCcceeeeccCCCCcccceeccccHHHHHHHHHHHHHhcCcccccchHHHh
Confidence 334567888999988654 332 23599999999988 599999999987754 345665432211
Q ss_pred ------------EEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHH
Q 019047 158 ------------VLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIV 225 (347)
Q Consensus 158 ------------~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a 225 (347)
-+...|+||.|.++..+.+.+|++++|.|..+...+|++++++.|.+|+....+ |..|+++-++.+
T Consensus 150 ~~~~f~~FFs~ysIaVGSTGNLGlSIGI~sA~lGF~vtVHMSADAr~WKKd~LRs~gV~ViEYe~D--Y~~AVeeGRk~a 227 (443)
T COG3048 150 LSEEFKDFFSRYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARAWKKDKLRSHGVTVVEYEQD--YGVAVEEGRKEA 227 (443)
T ss_pred hcHHHHHHHHhheEeecccCccceehhhhhhhhcceEEEEecchHHHHHHHHHHhcCceEEEecch--hhHHHHHhhhhh
Confidence 478899999999999999999999999999999999999999999999999864 578999999999
Q ss_pred HcCCCceecCCCCChHHHHHHHHHHHHHHHHhhC--------CCCCEEEEecCcchHHHHHHHHHHhc-CCCCeEEEEcC
Q 019047 226 LNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTL--------GCVDIFVAAIGTGGTITGTGRFLKMM-NKEIKVVGVEP 296 (347)
Q Consensus 226 ~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei~~ql~--------~~~D~vv~pvG~Gg~~~Gi~~~~k~~-~~~~~vigVep 296 (347)
+..|.+||++. +|...+..||.+.+.-+..|++ ..|-.|..|||.||.-.|++.++|.. +.++.++-+||
T Consensus 228 ~~DP~c~FiDD-E~S~~LFLGYaVAa~Rlk~Q~d~~gi~vd~ehPLfVylPCGVGGgPGGVafGLKl~fgd~VhcfFaEP 306 (443)
T COG3048 228 ESDPNCFFIDD-ENSRTLFLGYAVAAQRLKKQFDEQGIVVDAEHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEP 306 (443)
T ss_pred ccCCceEEecc-cchhhhhhhHHHHHHHHHHHHHhcCceecCCCceEEEeecCCCCCcchhhhhhHhhhcCceEEEEecC
Confidence 99999999988 5666666799999999999984 25779999999999999999999987 46799999999
Q ss_pred CCCccc-----cC-----------------------CCCCCCchhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 297 AERSVI-----SG-----------------------ENAGYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 297 ~~~~~~-----~g-----------------------~~~~~~p~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
..++.+ +| +.++..-..+....+|..++|+|+..++-..+|++.|||.+.|
T Consensus 307 thsPcMlLGv~tGlHe~ISVqdiGidn~TaADGLAVgRpSgfVgr~me~lL~G~~TvdD~~ly~lL~~L~~~e~~rlEP 385 (443)
T COG3048 307 THSPCMLLGVYTGLHEQISVQDIGIDNLTAADGLAVGRPSGFVGRAMERLLDGYYTVDDQTLYDLLGWLAQEEGIRLEP 385 (443)
T ss_pred CCChHHHHhhhhccccceeeEeecccccccccceeecCccchHHHHHHHHhCCcEEechHHHHHHHHHHHHhcCcccCc
Confidence 987532 33 0111111233456789999999999999999999999998876
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=90.79 E-value=2 Score=34.88 Aligned_cols=87 Identities=26% Similarity=0.324 Sum_probs=50.4
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHH
Q 019047 168 GLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHF 247 (347)
Q Consensus 168 g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~ 247 (347)
|...+..|+.+|.+++++.+ ++.|++.++.+||+.+....+.+
T Consensus 3 G~~a~q~ak~~G~~vi~~~~---~~~k~~~~~~~Ga~~~~~~~~~~---------------------------------- 45 (130)
T PF00107_consen 3 GLMAIQLAKAMGAKVIATDR---SEEKLELAKELGADHVIDYSDDD---------------------------------- 45 (130)
T ss_dssp HHHHHHHHHHTTSEEEEEES---SHHHHHHHHHTTESEEEETTTSS----------------------------------
T ss_pred HHHHHHHHHHcCCEEEEEEC---CHHHHHHHHhhcccccccccccc----------------------------------
Confidence 55666677777744444443 56677777777776665543211
Q ss_pred HHHHHHHHHhhCC-CCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcC
Q 019047 248 DSTGPEIWEDTLG-CVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEP 296 (347)
Q Consensus 248 ~ti~~Ei~~ql~~-~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep 296 (347)
...+|.+..++ .+|+||-|+|++..+.-....+ .+.-+++.+--
T Consensus 46 --~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l---~~~G~~v~vg~ 90 (130)
T PF00107_consen 46 --FVEQIRELTGGRGVDVVIDCVGSGDTLQEAIKLL---RPGGRIVVVGV 90 (130)
T ss_dssp --HHHHHHHHTTTSSEEEEEESSSSHHHHHHHHHHE---EEEEEEEEESS
T ss_pred --cccccccccccccceEEEEecCcHHHHHHHHHHh---ccCCEEEEEEc
Confidence 11223333332 6899999999887666544433 34445555543
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=89.85 E-value=4 Score=38.46 Aligned_cols=59 Identities=24% Similarity=0.351 Sum_probs=45.5
Q ss_pred HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEEC
Q 019047 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (347)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~ 209 (347)
+.+.+.+|++.+|...+|.-|.++...|+.+|.+++++.. +..+.+.++.+|++-+...
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~---s~~~~~~l~~~Ga~~vi~~ 195 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAG---SDDKVAWLKELGFDAVFNY 195 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEEeC
Confidence 4556677888778777899999999999999998554433 5678888999999655443
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=88.25 E-value=5.6 Score=39.43 Aligned_cols=59 Identities=27% Similarity=0.431 Sum_probs=45.2
Q ss_pred HHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEE
Q 019047 145 DAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206 (347)
Q Consensus 145 ~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~ 206 (347)
++.+...+.++++.+| .++|.-|.+++..|+.+|.+.+++.. ..+.+++..+.+|++.+
T Consensus 176 ~a~~~~~~~~g~~VlV-~G~G~iG~~aiqlAk~~Ga~~vi~~d--~~~~r~~~a~~~Ga~~v 234 (393)
T TIGR02819 176 HGAVTAGVGPGSTVYI-AGAGPVGLAAAASAQLLGAAVVIVGD--LNPARLAQARSFGCETV 234 (393)
T ss_pred HHHHhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCceEEEeC--CCHHHHHHHHHcCCeEE
Confidence 3444455677777666 77899999999999999998766432 35778999999999854
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=87.66 E-value=13 Score=36.18 Aligned_cols=50 Identities=22% Similarity=0.322 Sum_probs=43.8
Q ss_pred EEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHh-cCCEEEEEC
Q 019047 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRA-FGAEIILTD 209 (347)
Q Consensus 158 ~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~-~GA~V~~~~ 209 (347)
.++..++|.-|...+..++.+|...+|++ +.++.|+++.+. .|++++..+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~--d~~~~Rl~~A~~~~g~~~~~~~ 221 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVV--DRSPERLELAKEAGGADVVVNP 221 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEe--CCCHHHHHHHHHhCCCeEeecC
Confidence 68999999999999999999999999888 468899999987 778877655
|
|
| >PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli | Back alignment and domain information |
|---|
Probab=87.31 E-value=2.9 Score=36.60 Aligned_cols=120 Identities=15% Similarity=0.066 Sum_probs=68.8
Q ss_pred HHHHHHHHHHcCCcEE-EEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHH-HHHHHHcCCCceecCCCCChHHHHH
Q 019047 168 GLGIAFVAAVKGYKLI-VTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDK-AEEIVLNTPNAYMFQQFDNMANLKI 245 (347)
Q Consensus 168 g~AlA~aa~~~Gl~~~-I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~-a~~~a~~~~~~~~~~~~~n~~~~~~ 245 (347)
|..+.++++.+|.++. -+-+.+.-..-...+...|-+|.+++++ .+..++ +..+.+.+|+.-.+.-+..+... .
T Consensus 13 G~~i~~~~~~~g~~~~~rv~g~dl~~~l~~~~~~~~~~ifllG~~---~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~-~ 88 (172)
T PF03808_consen 13 GMPIVWAARLLGRPLPERVTGSDLFPDLLRRAEQRGKRIFLLGGS---EEVLEKAAANLRRRYPGLRIVGYHHGYFDE-E 88 (172)
T ss_pred CHHHHHHHHHcCCCCCcccCHHHHHHHHHHHHHHcCCeEEEEeCC---HHHHHHHHHHHHHHCCCeEEEEecCCCCCh-h
Confidence 4788999999998873 3333333445566777889999999864 344444 44566677766554322222221 1
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEc
Q 019047 246 HFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVE 295 (347)
Q Consensus 246 g~~ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe 295 (347)
-...+..+|.+ ..||+|+++.|+---=. .....+...+..-+++|-
T Consensus 89 ~~~~i~~~I~~---~~pdiv~vglG~PkQE~-~~~~~~~~l~~~v~i~vG 134 (172)
T PF03808_consen 89 EEEAIINRINA---SGPDIVFVGLGAPKQER-WIARHRQRLPAGVIIGVG 134 (172)
T ss_pred hHHHHHHHHHH---cCCCEEEEECCCCHHHH-HHHHHHHHCCCCEEEEEC
Confidence 23344444433 37999999999864321 122333333334566664
|
Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process |
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=87.16 E-value=7 Score=37.87 Aligned_cols=57 Identities=26% Similarity=0.480 Sum_probs=45.8
Q ss_pred cCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEE
Q 019047 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (347)
Q Consensus 149 ~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~ 208 (347)
.+.+++|++.++.+.+|.-|..+-..|+.+|..+++.+. +..|...++.+||+.+..
T Consensus 137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~---s~~k~~~~~~lGAd~vi~ 193 (326)
T COG0604 137 RAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVS---SSEKLELLKELGADHVIN 193 (326)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEec---CHHHHHHHHhcCCCEEEc
Confidence 466778889999999999999999999999994444443 446667999999987764
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=87.09 E-value=4.1 Score=39.35 Aligned_cols=53 Identities=19% Similarity=0.280 Sum_probs=42.1
Q ss_pred CCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEE
Q 019047 153 TPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206 (347)
Q Consensus 153 ~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~ 206 (347)
.++++.+|. ++|.-|...+..++..|.+++++.....++.|++.++.+|++.+
T Consensus 171 ~~g~~vlI~-G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v 223 (355)
T cd08230 171 WNPRRALVL-GAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYV 223 (355)
T ss_pred CCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEe
Confidence 456665555 67999999999999999986666555557889999999999974
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=86.81 E-value=4.5 Score=37.73 Aligned_cols=60 Identities=33% Similarity=0.380 Sum_probs=43.1
Q ss_pred HHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 145 DAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 145 ~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
.+.+.....++++.+|. ++|.-|...+..|+.+|.+.++.+ +.++.|++.++.+|++.+.
T Consensus 111 ~al~~~~~~~g~~VlV~-G~G~vG~~~~~~ak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~i 170 (280)
T TIGR03366 111 AALEAAGDLKGRRVLVV-GAGMLGLTAAAAAAAAGAARVVAA--DPSPDRRELALSFGATALA 170 (280)
T ss_pred HHHHhccCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCcEec
Confidence 34443333467675555 679999999999999999855555 3467888899999996543
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=86.80 E-value=28 Score=33.34 Aligned_cols=58 Identities=29% Similarity=0.339 Sum_probs=42.6
Q ss_pred HHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 147 EESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 147 ~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
.+...+.++++.+|. ++|..|.+++..|+.+|.+.++.+.. ...+....+.+|++.++
T Consensus 159 ~~~~~~~~g~~vlI~-g~g~iG~~~~~lak~~G~~~v~~~~~--~~~~~~~~~~~g~~~~v 216 (351)
T cd08285 159 AELANIKLGDTVAVF-GIGPVGLMAVAGARLRGAGRIIAVGS--RPNRVELAKEYGATDIV 216 (351)
T ss_pred HHccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCceEe
Confidence 445556677777776 57999999999999999975555443 35677888889986443
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=86.70 E-value=7.6 Score=37.42 Aligned_cols=60 Identities=22% Similarity=0.378 Sum_probs=43.3
Q ss_pred HHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEE
Q 019047 145 DAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (347)
Q Consensus 145 ~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~ 208 (347)
.+.....+.++++.+|... |..|.+++.+|+.+|.++++ +. .++.+++.++.+|++.+..
T Consensus 157 ~a~~~~~~~~g~~VlV~G~-G~vG~~a~~~a~~~G~~vi~-~~--~~~~~~~~~~~~Ga~~~i~ 216 (349)
T TIGR03201 157 QAAVQAGLKKGDLVIVIGA-GGVGGYMVQTAKAMGAAVVA-ID--IDPEKLEMMKGFGADLTLN 216 (349)
T ss_pred HHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCeEEE-Ec--CCHHHHHHHHHhCCceEec
Confidence 3444455667777655554 99999999999999997443 32 3567888889999976543
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=86.03 E-value=8.3 Score=36.57 Aligned_cols=58 Identities=24% Similarity=0.416 Sum_probs=45.3
Q ss_pred HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEE
Q 019047 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (347)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~ 208 (347)
+.+.+.+|++.++...+|--|.+++..|+.+|.++++... +..+.+.++.+|++.+..
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~---s~~~~~~~~~lGa~~vi~ 189 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAG---SDEKVAYLKKLGFDVAFN 189 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEEe
Confidence 4566777888777777899999999999999998655443 567888889999976553
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.85 E-value=14 Score=33.69 Aligned_cols=94 Identities=12% Similarity=0.021 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHH
Q 019047 138 IGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGA 217 (347)
Q Consensus 138 ga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a 217 (347)
-+..++....+-|. +.+=++..+=.+..++...++.++ ++.|=...-.++...+.....||+.+++++-.
T Consensus 26 ~a~~~a~Ali~gGi----~~IEITl~sp~a~e~I~~l~~~~p-~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~~~----- 95 (211)
T COG0800 26 EALPLAKALIEGGI----PAIEITLRTPAALEAIRALAKEFP-EALIGAGTVLNPEQARQAIAAGAQFIVSPGLN----- 95 (211)
T ss_pred HHHHHHHHHHHcCC----CeEEEecCCCCHHHHHHHHHHhCc-ccEEccccccCHHHHHHHHHcCCCEEECCCCC-----
Confidence 35556666677776 444466677889999999999999 76665555568899999999999999998532
Q ss_pred HHHHHHHHHcCCCceecCCCCChHHH
Q 019047 218 LDKAEEIVLNTPNAYMFQQFDNMANL 243 (347)
Q Consensus 218 ~~~a~~~a~~~~~~~~~~~~~n~~~~ 243 (347)
.+..+.+.++ +..++.+-.++.-+
T Consensus 96 -~ev~~~a~~~-~ip~~PG~~TptEi 119 (211)
T COG0800 96 -PEVAKAANRY-GIPYIPGVATPTEI 119 (211)
T ss_pred -HHHHHHHHhC-CCcccCCCCCHHHH
Confidence 2334455555 67777776666544
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=85.85 E-value=8.8 Score=36.64 Aligned_cols=57 Identities=25% Similarity=0.325 Sum_probs=44.3
Q ss_pred HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHh-cCCEEEE
Q 019047 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRA-FGAEIIL 207 (347)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~-~GA~V~~ 207 (347)
+.+.+.+|++.+|...+|.-|.+++..|+.+|.++++... +..+.+.++. +|++-+.
T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~---~~~~~~~~~~~lGa~~vi 202 (338)
T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAG---SDEKVDLLKNKLGFDDAF 202 (338)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHhcCCceeE
Confidence 3456778888888887899999999999999998554433 4678888887 9996544
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=85.58 E-value=9.9 Score=36.45 Aligned_cols=60 Identities=30% Similarity=0.457 Sum_probs=45.6
Q ss_pred HHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 145 DAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 145 ~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
.+.+...+.+++++++ .++|..|.+++..|+.+|.+.++.+.. .+.+...++.+|++.+.
T Consensus 165 ~a~~~~~~~~g~~vlI-~g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~v~ 224 (350)
T cd08256 165 HAVDRANIKFDDVVVL-AGAGPLGLGMIGAARLKNPKKLIVLDL--KDERLALARKFGADVVL 224 (350)
T ss_pred HHHHhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCcEEEEEcC--CHHHHHHHHHcCCcEEe
Confidence 3345556677777666 777999999999999999887666554 46778888999986654
|
This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, |
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=85.30 E-value=34 Score=36.04 Aligned_cols=97 Identities=10% Similarity=0.130 Sum_probs=66.2
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCC
Q 019047 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQ 236 (347)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~ 236 (347)
..++.++.|..|+.+|..-...|++++++=. ++.+.+.++.+|.+++.-|..
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~---d~~~v~~~~~~g~~v~~GDat------------------------- 452 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLER---DISAVNLMRKYGYKVYYGDAT------------------------- 452 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEEC---CHHHHHHHHhCCCeEEEeeCC-------------------------
Confidence 4589999999999999998889998876643 466777778888777665432
Q ss_pred CCChHHHHHHHHHHHHHHHHhhC-CCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEc
Q 019047 237 FDNMANLKIHFDSTGPEIWEDTL-GCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVE 295 (347)
Q Consensus 237 ~~n~~~~~~g~~ti~~Ei~~ql~-~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe 295 (347)
++ |+.++.+ .+.|.+|++.+.=....-+....|+.+|+.+|++--
T Consensus 453 --~~------------~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~p~~~IiaRa 498 (601)
T PRK03659 453 --QL------------ELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQHFPHLHILARA 498 (601)
T ss_pred --CH------------HHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 11 1122221 246777777777555555666777777888887653
|
|
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=85.15 E-value=25 Score=34.06 Aligned_cols=57 Identities=26% Similarity=0.384 Sum_probs=42.9
Q ss_pred HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
+.+.+.+|++.+|. ++|..|.+++..++.+|...++.+.. .+.+++.++.+|++-+.
T Consensus 178 ~~~~~~~g~~vlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~~--~~~~~~~~~~~ga~~~i 234 (365)
T cd08277 178 NTAKVEPGSTVAVF-GLGAVGLSAIMGAKIAGASRIIGVDI--NEDKFEKAKEFGATDFI 234 (365)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCCcEe
Confidence 45567778887776 67999999999999999954444432 56788888999996443
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=85.10 E-value=34 Score=33.23 Aligned_cols=57 Identities=23% Similarity=0.272 Sum_probs=42.7
Q ss_pred HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
+.+.+.+|++.+|. ++|.-|.+++..|+.+|.+.+|.+. ..+.+++.++.+|++.+.
T Consensus 179 ~~~~~~~g~~VlV~-G~G~iG~~a~q~Ak~~G~~~Vi~~~--~~~~~~~~a~~~Ga~~~i 235 (368)
T TIGR02818 179 NTAKVEEGDTVAVF-GLGGIGLSVIQGARMAKASRIIAID--INPAKFELAKKLGATDCV 235 (368)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHhCCCeEE
Confidence 44556777776666 5799999999999999995444443 367788888999996544
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=85.05 E-value=28 Score=36.84 Aligned_cols=51 Identities=20% Similarity=0.275 Sum_probs=41.0
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECC
Q 019047 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDP 210 (347)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~ 210 (347)
..++.++.|..|+.+|..-...|++++++ +.++.+.+.++.+|.+|+.-|.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvI---D~d~~~v~~~~~~g~~v~~GDa 451 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVL---DHDPDHIETLRKFGMKVFYGDA 451 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEE---ECCHHHHHHHHhcCCeEEEEeC
Confidence 45899999999999999998899988776 3466778888888888776553
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=83.77 E-value=2 Score=36.83 Aligned_cols=41 Identities=17% Similarity=0.101 Sum_probs=33.5
Q ss_pred EEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcC
Q 019047 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFG 202 (347)
Q Consensus 159 vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~G 202 (347)
|+.-++||||.|+|...+..|.++.++.++. ...+.++..+
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~---~~~~~i~~~~ 42 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDE---EQIEEINETR 42 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCH---HHHHHHHHHT
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccH---HHHHHHHHhC
Confidence 6788999999999999999999999998853 5555555443
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=83.68 E-value=9.4 Score=36.33 Aligned_cols=60 Identities=25% Similarity=0.410 Sum_probs=44.9
Q ss_pred HHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEE
Q 019047 145 DAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (347)
Q Consensus 145 ~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~ 208 (347)
.+.+.+.+.++.+.+|...+|..|.+++..|+.+|.++++... +. ++..++.+|++.+..
T Consensus 168 ~~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~---~~-~~~~~~~~g~~~~~~ 227 (350)
T cd08274 168 NMLERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAG---AA-KEEAVRALGADTVIL 227 (350)
T ss_pred HHHhhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeC---ch-hhHHHHhcCCeEEEe
Confidence 3445566777888777777799999999999999999655443 23 677778899975443
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >TIGR00670 asp_carb_tr aspartate carbamoyltransferase | Back alignment and domain information |
|---|
Probab=83.63 E-value=4.5 Score=38.88 Aligned_cols=52 Identities=19% Similarity=0.110 Sum_probs=42.5
Q ss_pred EEEEeCC---ChhHHHHHHHHHHcCCcEEEEeCCC--CCHHHHHHHHhcCCEEEEEC
Q 019047 158 VLVEPTT---GNTGLGIAFVAAVKGYKLIVTMPAS--TNLERRILLRAFGAEIILTD 209 (347)
Q Consensus 158 ~vv~ass---GN~g~AlA~aa~~~Gl~~~I~vp~~--~~~~~~~~l~~~GA~V~~~~ 209 (347)
.|+..+. +|.++++..+++.+|+++.+..|++ .++..+..++..|++|..++
T Consensus 152 ~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~ 208 (301)
T TIGR00670 152 KIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETE 208 (301)
T ss_pred EEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEEC
Confidence 3566666 5999999999999999999999986 45555677777899998775
|
Ornithine carbamoyltransferases are in the same superfamily and form an outgroup. |
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.56 E-value=21 Score=33.03 Aligned_cols=51 Identities=22% Similarity=0.254 Sum_probs=36.1
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEEC
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~ 209 (347)
++.+|+.++|.-|.++|......|.++++.... ..+...++..|.+++..+
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~---~~~~~~l~~~~~~~~~~D 55 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGWRVFATCRK---EEDVAALEAEGLEAFQLD 55 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHCCceEEEcc
Confidence 467888888999999999988889987776543 334445555565555544
|
|
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=83.30 E-value=15 Score=35.01 Aligned_cols=59 Identities=25% Similarity=0.418 Sum_probs=41.8
Q ss_pred HcCCCCCC--CeEEEEeCCChhHHHHHHHHHHcCC-cEEEEeCCCCCHHHHHHHHh-cCCEEEEEC
Q 019047 148 ESGDITPG--KTVLVEPTTGNTGLGIAFVAAVKGY-KLIVTMPASTNLERRILLRA-FGAEIILTD 209 (347)
Q Consensus 148 ~~G~~~~g--~~~vv~assGN~g~AlA~aa~~~Gl-~~~I~vp~~~~~~~~~~l~~-~GA~V~~~~ 209 (347)
+.+.+.++ ++.+|...+|.-|.++...|+.+|. ++++... +..+.+.++. +|++-+...
T Consensus 146 ~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~---s~~~~~~~~~~lGa~~vi~~ 208 (345)
T cd08293 146 EKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICG---SDEKCQLLKSELGFDAAINY 208 (345)
T ss_pred HhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcC---CHHHHHHHHHhcCCcEEEEC
Confidence 34445555 6777777779999999999999998 5554433 4567777765 999765543
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=82.75 E-value=5.6 Score=35.87 Aligned_cols=61 Identities=26% Similarity=0.319 Sum_probs=45.5
Q ss_pred EEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHH
Q 019047 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAE 222 (347)
Q Consensus 159 vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~ 222 (347)
+|...+|+.|..++.+....+.++.+++.+. +......++..|++|+..+ ++-.+.+..+.
T Consensus 2 ~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~-~~~~~~~l~~~g~~vv~~d--~~~~~~l~~al 62 (233)
T PF05368_consen 2 LVTGATGNQGRSVVRALLSAGFSVRALVRDP-SSDRAQQLQALGAEVVEAD--YDDPESLVAAL 62 (233)
T ss_dssp EEETTTSHHHHHHHHHHHHTTGCEEEEESSS-HHHHHHHHHHTTTEEEES---TT-HHHHHHHH
T ss_pred EEECCccHHHHHHHHHHHhCCCCcEEEEecc-chhhhhhhhcccceEeecc--cCCHHHHHHHH
Confidence 6778889999999999888999999988875 4556677888999998655 32234444443
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.67 E-value=15 Score=35.56 Aligned_cols=58 Identities=19% Similarity=0.307 Sum_probs=44.0
Q ss_pred HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHH-hcCCEEEEE
Q 019047 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLR-AFGAEIILT 208 (347)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~-~~GA~V~~~ 208 (347)
+.+.+.+|++.+|...+|.-|.++...|+.+|.++++.. .+..+...++ .+|++-+..
T Consensus 152 ~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~---~~~~k~~~~~~~lGa~~vi~ 210 (348)
T PLN03154 152 EVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSA---GSSQKVDLLKNKLGFDEAFN 210 (348)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEc---CCHHHHHHHHHhcCCCEEEE
Confidence 345667888877877779999999999999999855433 2567788876 799976553
|
|
| >cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2 | Back alignment and domain information |
|---|
Probab=82.27 E-value=13 Score=34.83 Aligned_cols=59 Identities=22% Similarity=0.304 Sum_probs=42.6
Q ss_pred HHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 146 AEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 146 a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
+.+...+.++.+.+|...+|.-|.+++..|+.+|.+.++... +..++..++.+|++-+.
T Consensus 131 ~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~~~ 189 (324)
T cd08292 131 LLDFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVR---RDAGVAELRALGIGPVV 189 (324)
T ss_pred HHHhhCCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEec---CHHHHHHHHhcCCCEEE
Confidence 344456677778777777899999999999999998766644 34456666667875443
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina |
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=82.01 E-value=17 Score=34.91 Aligned_cols=62 Identities=29% Similarity=0.366 Sum_probs=44.5
Q ss_pred HHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEE
Q 019047 144 TDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (347)
Q Consensus 144 ~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~ 208 (347)
+.+.+...+.++++.+|.+ +|..|.+++..|+.+|++.++.+. .+..+...++.+|++.++.
T Consensus 162 ~~~l~~~~~~~g~~vlI~g-~g~vG~~a~q~a~~~G~~~v~~~~--~~~~~~~~~~~~ga~~~i~ 223 (351)
T cd08233 162 WHAVRRSGFKPGDTALVLG-AGPIGLLTILALKAAGASKIIVSE--PSEARRELAEELGATIVLD 223 (351)
T ss_pred HHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHhCCCEEEC
Confidence 3344555566777766664 689999999999999995444443 3666778888899976553
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >COG2130 Putative NADP-dependent oxidoreductases [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.37 E-value=12 Score=36.23 Aligned_cols=58 Identities=22% Similarity=0.357 Sum_probs=49.8
Q ss_pred HHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHh-cCCEEEE
Q 019047 147 EESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRA-FGAEIIL 207 (347)
Q Consensus 147 ~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~-~GA~V~~ 207 (347)
+.-|..+.|++.+|.+-+|-.|.-+...|+..|.+++-+.. .++|.+.+.. +|.++..
T Consensus 143 l~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaG---g~eK~~~l~~~lGfD~~i 201 (340)
T COG2130 143 LDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAG---GAEKCDFLTEELGFDAGI 201 (340)
T ss_pred HHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecC---CHHHHHHHHHhcCCceee
Confidence 56788888999999999999999999999999999988776 6789998887 6776654
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=81.08 E-value=7.7 Score=37.23 Aligned_cols=60 Identities=23% Similarity=0.143 Sum_probs=43.6
Q ss_pred HHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 144 TDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 144 ~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
+.+.+...+++|++.+|.. .|.-|.+++..|+.+|.+++++.. ++.|+++++.+||+.+.
T Consensus 155 ~~~~~~~~~~~g~~VlV~G-~g~iG~~a~~~a~~~G~~vi~~~~---~~~~~~~a~~~Ga~~vi 214 (329)
T TIGR02822 155 YRALLRASLPPGGRLGLYG-FGGSAHLTAQVALAQGATVHVMTR---GAAARRLALALGAASAG 214 (329)
T ss_pred HHHHHhcCCCCCCEEEEEc-CCHHHHHHHHHHHHCCCeEEEEeC---ChHHHHHHHHhCCceec
Confidence 3444455677787766655 588899999999999997444322 46688999999998654
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=80.83 E-value=15 Score=34.89 Aligned_cols=62 Identities=27% Similarity=0.385 Sum_probs=44.2
Q ss_pred HHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEE
Q 019047 144 TDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (347)
Q Consensus 144 ~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~ 208 (347)
+.+.+...+.+|++.+|. ++|--|.+++..|+.+|.+-++.+. .+..+++.++.+|++.+..
T Consensus 153 ~~~l~~~~~~~g~~vlV~-G~G~vG~~~~~~ak~~G~~~vi~~~--~~~~~~~~~~~~ga~~~i~ 214 (339)
T cd08239 153 YHALRRVGVSGRDTVLVV-GAGPVGLGALMLARALGAEDVIGVD--PSPERLELAKALGADFVIN 214 (339)
T ss_pred HHHHHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHhCCCEEEc
Confidence 344444456677777676 5699999999999999998333333 3567888889999965543
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.46 E-value=12 Score=34.22 Aligned_cols=69 Identities=17% Similarity=0.206 Sum_probs=47.0
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHH
Q 019047 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEI 224 (347)
Q Consensus 155 g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~ 224 (347)
+++.+|+.++|.-|.++|......|.+++++-... .......++..|.+++.+..+.+..+.++.+.+.
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 76 (251)
T PRK12481 8 GKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE-APETQAQVEALGRKFHFITADLIQQKDIDSIVSQ 76 (251)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCch-HHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHH
Confidence 35778888899999999999999999988764322 2333456667788887665444434555555443
|
|
| >cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins | Back alignment and domain information |
|---|
Probab=80.42 E-value=11 Score=32.83 Aligned_cols=127 Identities=17% Similarity=0.131 Sum_probs=69.5
Q ss_pred HHHHHHHHHHcCCcEEEEeCC-CCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHH-HHHHcCCCceecCCCCChHHHHH
Q 019047 168 GLGIAFVAAVKGYKLIVTMPA-STNLERRILLRAFGAEIILTDPEKGLRGALDKAE-EIVLNTPNAYMFQQFDNMANLKI 245 (347)
Q Consensus 168 g~AlA~aa~~~Gl~~~I~vp~-~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~-~~a~~~~~~~~~~~~~n~~~~~~ 245 (347)
|..+.++++.+|.+..--++. +.-..-.+.+...|.+|.++++. .+..+.+. .+.+++|+...+.-++.+....
T Consensus 11 G~~l~~~~~~~~~~~~~r~~g~dl~~~ll~~~~~~~~~v~llG~~---~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~- 86 (171)
T cd06533 11 GIGVVWAARLLGGPLPERVTGSDLMPALLELAAQKGLRVFLLGAK---PEVLEKAAERLRARYPGLKIVGYHHGYFGPE- 86 (171)
T ss_pred cHHHHHHHHHcCCCCCcccCcHHHHHHHHHHHHHcCCeEEEECCC---HHHHHHHHHHHHHHCCCcEEEEecCCCCChh-
Confidence 477899999999883222222 22233455566678999999864 34454444 5666777766543222222211
Q ss_pred HHHHHHHHHHHhhC-CCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccccC
Q 019047 246 HFDSTGPEIWEDTL-GCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG 304 (347)
Q Consensus 246 g~~ti~~Ei~~ql~-~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~g 304 (347)
... ++.+++. ..||.|+++.|.---= -.+...+...+..-+++|-.. -...+|
T Consensus 87 ~~~----~i~~~I~~~~pdiv~vglG~PkQE-~~~~~~~~~l~~~v~~~vG~~-~d~~aG 140 (171)
T cd06533 87 EEE----EIIERINASGADILFVGLGAPKQE-LWIARHKDRLPVPVAIGVGGS-FDFLAG 140 (171)
T ss_pred hHH----HHHHHHHHcCCCEEEEECCCCHHH-HHHHHHHHHCCCCEEEEecee-eEeccC
Confidence 111 1334442 3799999999985432 122333444445556776532 234444
|
E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan. |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=80.24 E-value=17 Score=35.13 Aligned_cols=58 Identities=24% Similarity=0.306 Sum_probs=43.5
Q ss_pred HHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 147 EESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 147 ~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
.+.+.+.+|++.+|. ++|--|.+++..|+.+|.+.++.+. .++.+++.++.+|++-+.
T Consensus 169 ~~~~~~~~g~~VlV~-G~g~vG~~a~~~ak~~G~~~Vi~~~--~~~~~~~~~~~~Ga~~~i 226 (358)
T TIGR03451 169 VNTGGVKRGDSVAVI-GCGGVGDAAIAGAALAGASKIIAVD--IDDRKLEWAREFGATHTV 226 (358)
T ss_pred HhccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHcCCceEE
Confidence 345556777787776 5799999999999999997555443 356788888999996544
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 347 | ||||
| 4aec_A | 430 | Crystal Structure Of The Arabidopsis Thaliana O-Ace | 1e-94 | ||
| 1z7w_A | 322 | Crystal Structure Of O-Acetylserine Sulfhydrylase F | 8e-90 | ||
| 2isq_A | 320 | Crystal Structure Of O-Acetylserine Sulfhydrylase F | 8e-90 | ||
| 1z7y_A | 322 | Crystal Structure Of The Arabidopsis Thaliana O-Ace | 3e-89 | ||
| 3vbe_A | 344 | Crystal Structure Of Beta-Cyanoalanine Synthase In | 4e-83 | ||
| 3vc3_A | 344 | Crystal Structure Of Beta-Cyanoalanine Synthase K95 | 2e-82 | ||
| 2q3d_A | 313 | 2.2 A Resolution Crystal Structure Of O-acetylserin | 2e-63 | ||
| 3rr2_A | 314 | Structure Of A Cysteine Synthase (O-Acetylserine Su | 7e-63 | ||
| 2q3b_A | 313 | 1.8 A Resolution Crystal Structure Of O-Acetylserin | 9e-63 | ||
| 4i1y_A | 314 | The Structure Of Cysteine Synthase From Mycobacteri | 7e-62 | ||
| 1oas_A | 322 | O-Acetylserine Sulfhydrylase From Salmonella Typhim | 8e-58 | ||
| 1d6s_A | 322 | Crystal Structure Of The K41a Mutant Of O-Acetylser | 5e-57 | ||
| 4air_A | 354 | Leishmania Major Cysteine Synthase Length = 354 | 7e-56 | ||
| 3t4p_A | 334 | Crystal Structure Of O-Acetyl Serine Sulfhydrylase | 3e-55 | ||
| 1ve1_A | 304 | Crystal Structure Of T.Th. Hb8 O-Acetylserine Sulfh | 4e-53 | ||
| 2egu_A | 308 | Crystal Structure Of O-Acetylserine Sulfhydrase Fro | 4e-48 | ||
| 1y7l_A | 316 | O-Acetylserine Sulfhydrylase Complex Length = 316 | 1e-46 | ||
| 2bhs_A | 303 | Crystal Structure Of Cysteine Synthase B Length = 3 | 7e-46 | ||
| 2v03_A | 303 | High Resolution Structure And Catalysis Of An O- Ac | 3e-45 | ||
| 2jc3_A | 303 | Structure Of O-acetylserine Sulfhydrylase B From Sa | 3e-45 | ||
| 2bht_A | 303 | Crystal Structure Of O-Acetylserine Sulfhydrylase B | 6e-45 | ||
| 3fca_A | 291 | Genetic Incorporation Of A Metal-Ion Chelating Amin | 4e-44 | ||
| 1o58_A | 303 | Crystal Structure Of O-Acetylserine Sulfhydrylase ( | 7e-44 | ||
| 1m54_A | 363 | Cystathionine-Beta Synthase: Reduced Vicinal Thiols | 7e-37 | ||
| 1jbq_A | 435 | Structure Of Human Cystathionine Beta-Synthase: A U | 9e-37 | ||
| 3bm5_A | 338 | Crystal Structure Of O-Acetyl-Serine Sulfhydrylase | 1e-36 | ||
| 2pqm_A | 343 | Crystal Structure Of Cysteine Synthase (Oass) From | 1e-36 | ||
| 3pc2_A | 527 | Full Length Structure Of Cystathionine Beta-Synthas | 5e-35 | ||
| 3dwg_A | 325 | Crystal Structure Of A Sulfur Carrier Protein Compl | 6e-35 | ||
| 3dki_A | 326 | 2.1 A X-Ray Structure Of Cysm (Rv1336) From Mycobac | 3e-34 | ||
| 3dwi_A | 323 | Crystal Structure Of Mycobacterium Tuberculosis Cys | 3e-34 | ||
| 1wkv_A | 389 | Crystal Structure Of O-Phosphoserine Sulfhydrylase | 9e-06 | ||
| 3vsc_A | 389 | Crystal Structure Of The K127a Mutant Of O-Phosphos | 4e-05 | ||
| 1tdj_A | 514 | Threonine Deaminase (Biosynthetic) From E. Coli Len | 9e-05 |
| >pdb|4AEC|A Chain A, Crystal Structure Of The Arabidopsis Thaliana O-Acetyl- Serine-(Thiol)-Lyase C Length = 430 | Back alignment and structure |
|
| >pdb|1Z7W|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From Arabidopsis Thaliana Length = 322 | Back alignment and structure |
|
| >pdb|2ISQ|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase From Arabidopsis Thaliana In Complex With C-Terminal Peptide From Arabidopsis Serine Acetyltransferase Length = 320 | Back alignment and structure |
|
| >pdb|1Z7Y|A Chain A, Crystal Structure Of The Arabidopsis Thaliana O-Acetylserine Sulfhydrylase K46a Mutant Length = 322 | Back alignment and structure |
|
| >pdb|3VBE|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase In Soybean Length = 344 | Back alignment and structure |
|
| >pdb|3VC3|A Chain A, Crystal Structure Of Beta-Cyanoalanine Synthase K95a Mutant In Soybean Length = 344 | Back alignment and structure |
|
| >pdb|2Q3D|A Chain A, 2.2 A Resolution Crystal Structure Of O-acetylserine Sulfhydrylase (oass) From Mycobacterium Tuberculosis In Complex With The Reaction Intermediate Alpha-aminoacrylate Length = 313 | Back alignment and structure |
|
| >pdb|3RR2|A Chain A, Structure Of A Cysteine Synthase (O-Acetylserine Sulfhydrylase (Oass)) From Mycobacterium Marinum Atcc Baa-535 M Length = 314 | Back alignment and structure |
|
| >pdb|2Q3B|A Chain A, 1.8 A Resolution Crystal Structure Of O-Acetylserine Sulfhydrylase (Oass) Holoenzyme From Mycobacterium Tuberculosis Length = 313 | Back alignment and structure |
|
| >pdb|4I1Y|A Chain A, The Structure Of Cysteine Synthase From Mycobacterium Ulcerans Agy99 Length = 314 | Back alignment and structure |
|
| >pdb|1OAS|A Chain A, O-Acetylserine Sulfhydrylase From Salmonella Typhimurium Length = 322 | Back alignment and structure |
|
| >pdb|1D6S|A Chain A, Crystal Structure Of The K41a Mutant Of O-Acetylserine Sulfhydrylase Complexed In External Aldimine Linkage With Methionine Length = 322 | Back alignment and structure |
|
| >pdb|4AIR|A Chain A, Leishmania Major Cysteine Synthase Length = 354 | Back alignment and structure |
|
| >pdb|3T4P|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase From Leishmania Donovani In Complex With Designed Tetrapeptide Length = 334 | Back alignment and structure |
|
| >pdb|1VE1|A Chain A, Crystal Structure Of T.Th. Hb8 O-Acetylserine Sulfhydrylase Length = 304 | Back alignment and structure |
|
| >pdb|2EGU|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrase From Geobacillus Kaustophilus Hta426 Length = 308 | Back alignment and structure |
|
| >pdb|1Y7L|A Chain A, O-Acetylserine Sulfhydrylase Complex Length = 316 | Back alignment and structure |
|
| >pdb|2BHS|A Chain A, Crystal Structure Of Cysteine Synthase B Length = 303 | Back alignment and structure |
|
| >pdb|2V03|A Chain A, High Resolution Structure And Catalysis Of An O- Acetylserine Sulfhydrylase Length = 303 | Back alignment and structure |
|
| >pdb|2JC3|A Chain A, Structure Of O-acetylserine Sulfhydrylase B From Salmonella Typhimurium Length = 303 | Back alignment and structure |
|
| >pdb|2BHT|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase B Length = 303 | Back alignment and structure |
|
| >pdb|3FCA|A Chain A, Genetic Incorporation Of A Metal-Ion Chelating Amino Acid Into Proteins As Biophysical Probe Length = 291 | Back alignment and structure |
|
| >pdb|1O58|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665) From Thermotoga Maritima At 1.80 A Resolution Length = 303 | Back alignment and structure |
|
| >pdb|1M54|A Chain A, Cystathionine-Beta Synthase: Reduced Vicinal Thiols Length = 363 | Back alignment and structure |
|
| >pdb|1JBQ|A Chain A, Structure Of Human Cystathionine Beta-Synthase: A Unique Pyridoxal 5'- Phosphate Dependent Hemeprotein Length = 435 | Back alignment and structure |
|
| >pdb|3BM5|A Chain A, Crystal Structure Of O-Acetyl-Serine Sulfhydrylase From Entamoeba Histolytica In Complex With Cysteine Length = 338 | Back alignment and structure |
|
| >pdb|2PQM|A Chain A, Crystal Structure Of Cysteine Synthase (Oass) From Entamoeba Histolytica At 1.86 A Resolution Length = 343 | Back alignment and structure |
|
| >pdb|3PC2|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From Drosophila Length = 527 | Back alignment and structure |
|
| >pdb|3DWG|A Chain A, Crystal Structure Of A Sulfur Carrier Protein Complex Found In The Cysteine Biosynthetic Pathway Of Mycobacterium Tuberculosis Length = 325 | Back alignment and structure |
|
| >pdb|3DKI|A Chain A, 2.1 A X-Ray Structure Of Cysm (Rv1336) From Mycobacterium Tuberculosis An O-Phosphoserine Dependent Cysteine Synthase Length = 326 | Back alignment and structure |
|
| >pdb|3DWI|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cysm, The Cysteine Synthase B Length = 323 | Back alignment and structure |
|
| >pdb|1WKV|A Chain A, Crystal Structure Of O-Phosphoserine Sulfhydrylase Length = 389 | Back alignment and structure |
|
| >pdb|3VSC|A Chain A, Crystal Structure Of The K127a Mutant Of O-Phosphoserine Sulfhydrylase Complexed With External Schiff Base Of Pyridoxal 5'-Phosphate With O- Phospho-L-Serine Length = 389 | Back alignment and structure |
|
| >pdb|1TDJ|A Chain A, Threonine Deaminase (Biosynthetic) From E. Coli Length = 514 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 347 | |||
| 4aec_A | 430 | Cysteine synthase, mitochondrial; lyase, cysteine | 1e-165 | |
| 1z7w_A | 322 | Cysteine synthase; transferase; HET: PLP; 2.20A {A | 1e-162 | |
| 3tbh_A | 334 | O-acetyl serine sulfhydrylase; cysteine synthase, | 1e-160 | |
| 2q3b_A | 313 | Cysteine synthase A; pyridoxal-5'-phosphate, sulph | 1e-159 | |
| 1y7l_A | 316 | O-acetylserine sulfhydrylase, O-acetylserine (thio | 1e-151 | |
| 1ve1_A | 304 | O-acetylserine sulfhydrylase; PLP, transferase, ri | 1e-148 | |
| 2egu_A | 308 | Cysteine synthase; O-acetylserine sulfhydrase, str | 1e-145 | |
| 2pqm_A | 343 | Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.8 | 1e-144 | |
| 2v03_A | 303 | Cysteine synthase B; pyridoxal phosphate, cysteine | 1e-139 | |
| 1o58_A | 303 | O-acetylserine sulfhydrylase; TM0665, structural g | 1e-139 | |
| 3dwg_A | 325 | Cysteine synthase B; sulfur carrier protein comple | 1e-134 | |
| 1wkv_A | 389 | Cysteine synthase; homodimer, open alpha/beta fold | 1e-122 | |
| 1jbq_A | 435 | B, cystathionine beta-synthase, serine sulfhydrase | 1e-120 | |
| 3pc3_A | 527 | CG1753, isoform A; CBS, synthase, PLP, heme, amino | 1e-119 | |
| 1p5j_A | 372 | L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo | 7e-18 | |
| 2rkb_A | 318 | Serine dehydratase-like; PLP bound enzyme, enzyme | 3e-17 | |
| 4d9i_A | 398 | Diaminopropionate ammonia-lyase; fold type II PLP- | 3e-15 | |
| 2d1f_A | 360 | Threonine synthase; amino acid synthesis, pyridoxa | 3e-15 | |
| 2zsj_A | 352 | Threonine synthase; PLP dependent enzyme, lyase; H | 4e-15 | |
| 3l6b_A | 346 | Serine racemase; pyridoxal phosphate, PLP, isomera | 6e-15 | |
| 1v71_A | 323 | Serine racemase, hypothetical protein C320.14 in c | 1e-14 | |
| 3aey_A | 351 | Threonine synthase; PLP, pyridoxal phosphate, lyas | 1e-13 | |
| 1ve5_A | 311 | Threonine deaminase; riken structural genomics/Pro | 2e-13 | |
| 3ss7_X | 442 | D-serine dehydratase; type II fold, ALFA,beta-elim | 2e-13 | |
| 2gn0_A | 342 | Threonine dehydratase catabolic; TDCB, biodegradat | 5e-13 | |
| 3iau_A | 366 | Threonine deaminase; pyridoxal phosphate, amino-ac | 1e-12 | |
| 1tdj_A | 514 | Biosynthetic threonine deaminase; allostery, coope | 2e-12 | |
| 1e5x_A | 486 | Threonine synthase; threonine biosynthesis, PLP en | 6e-12 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-06 | |
| 1j0a_A | 325 | 1-aminocyclopropane-1-carboxylate deaminase; PLP d | 1e-04 |
| >4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana} Length = 430 | Back alignment and structure |
|---|
Score = 468 bits (1206), Expect = e-165
Identities = 179/340 (52%), Positives = 238/340 (70%), Gaps = 18/340 (5%)
Query: 16 LLPPHPLNIASQKRHRFARFKTSSLSSINGALATRRRILPIVASAKAGAAASSSSSSLYA 75
LL P + +S RF S S + A + S G+ S
Sbjct: 43 LLNPLTSSSSSSTLRRFRCSPEISSLSFSSASDFSLAMKRQSRSFADGSERDPSVVCEAV 102
Query: 76 TSTREIEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVK 135
+ G+NIA++V+QLIG+TPMVYLN + +GCV N+AAKLE MEPC SVK
Sbjct: 103 KRETGPD--------GLNIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVK 154
Query: 136 DRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERR 195
DRIGYSM+TDAE+ G I+PGK+VLVEPT+GNTG+G+AF+AA +GY+LI+TMPAS ++ERR
Sbjct: 155 DRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERR 214
Query: 196 ILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIW 255
+LL+AFGAE++LTDP KG+ GA+ KAEEI+ NTP+AYM QQFDN AN KIH+++TGPEIW
Sbjct: 215 VLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIW 274
Query: 256 EDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGEN--------- 306
+DT G VDIFVA IGTGGTITG GRF+K N + +V+GVEP E ++SG
Sbjct: 275 DDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGI 334
Query: 307 -AGYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLV 345
AG++P LD +++DEVI ++++EA+ A++LAL+EGL+V
Sbjct: 335 GAGFIPKNLDQKIMDEVIAISSEEAIETAKQLALKEGLMV 374
|
| >1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A* Length = 322 | Back alignment and structure |
|---|
Score = 455 bits (1174), Expect = e-162
Identities = 164/263 (62%), Positives = 213/263 (80%), Gaps = 10/263 (3%)
Query: 93 NIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDI 152
IA+DVT+LIG TP+VYLN V EGCVG VAAKLE MEPC SVKDRIG+SMI+DAE+ G I
Sbjct: 4 RIAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLI 63
Query: 153 TPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEK 212
PG++VL+EPT+GNTG+G+AF AA KGYKLI+TMPAS + ERRI+L AFG E++LTDP K
Sbjct: 64 KPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAK 123
Query: 213 GLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTG 272
G++GA+ KAEEI+ TPN YM QQF+N AN KIH+++TGPEIW+ T G +D FV+ IGTG
Sbjct: 124 GMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTG 183
Query: 273 GTITGTGRFLKMMNKEIKVVGVEPAERSVISGEN----------AGYVPSILDVQLLDEV 322
GTITG G++LK N +K+ GVEP E +++SG AG++PS+L+V L+DEV
Sbjct: 184 GTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDEV 243
Query: 323 IKVTNDEAVNMARRLALEEGLLV 345
++V++DE+++MAR+LAL+EGLLV
Sbjct: 244 VQVSSDESIDMARQLALKEGLLV 266
|
| >3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3t4p_A* 3spx_A* 4air_A* Length = 334 | Back alignment and structure |
|---|
Score = 451 bits (1162), Expect = e-160
Identities = 118/263 (44%), Positives = 168/263 (63%), Gaps = 11/263 (4%)
Query: 93 NIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDI 152
N+A+ + QLIG+TP +YLNK+ V K+E P SVKDR+G+++ AE+ G +
Sbjct: 10 NVAQSIDQLIGQTPALYLNKLN-NTKAKVVLKMECENPMASVKDRLGFAIYDKAEKEGKL 68
Query: 153 TPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEK 212
PGK+++VE ++GNTG+ +A + A++GYK+I+TMP S +LERR LLR FGAE+ILT
Sbjct: 69 IPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAAL 128
Query: 213 GLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTG 272
G++GA+ A++IV PNA + QF N IH ++TGPEIWE T VD F+A +GTG
Sbjct: 129 GMKGAVAMAKKIVAANPNAVLADQFATKYNALIHEETTGPEIWEQTNHNVDCFIAGVGTG 188
Query: 273 GTITGTGRFLKMMNKEIKVVGVEPAERSVISGEN----------AGYVPSILDVQLLDEV 322
GT+TG R LK M ++V VEP E V+SG G+VP +LD L+DEV
Sbjct: 189 GTLTGVARALKKMGSHARIVAVEPTESPVLSGGKPGPHKIQGIGPGFVPDVLDRSLIDEV 248
Query: 323 IKVTNDEAVNMARRLALEEGLLV 345
+ V D+A+ A +L +G+
Sbjct: 249 LCVAGDDAIETALKLTRSDGVFC 271
|
| >2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A Length = 313 | Back alignment and structure |
|---|
Score = 448 bits (1155), Expect = e-159
Identities = 134/266 (50%), Positives = 182/266 (68%), Gaps = 11/266 (4%)
Query: 90 HGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEES 149
++IAED+TQLIGRTP+V L +VT+G V ++ AKLE P SVKDRIG +M+ AE++
Sbjct: 2 SHMSIAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQA 61
Query: 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209
G I P T+++EPT+GNTG+ +A V A +GY+ ++TMP + +LERR+LLRA+GAE+ILT
Sbjct: 62 GLIKPD-TIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTP 120
Query: 210 PEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAI 269
G+ GA+ KAEE+ ++ QQF+N AN IH +T E+W DT G VDI VA +
Sbjct: 121 GADGMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGV 180
Query: 270 GTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGEN----------AGYVPSILDVQLL 319
GTGGTITG + +K + V VEPA V+SG AG+VP +LD L+
Sbjct: 181 GTGGTITGVAQVIKERKPSARFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPPVLDQDLV 240
Query: 320 DEVIKVTNDEAVNMARRLALEEGLLV 345
DE+I V N++A+N+ARRLA EEGLLV
Sbjct: 241 DEIITVGNEDALNVARRLAREEGLLV 266
|
| >1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A* Length = 316 | Back alignment and structure |
|---|
Score = 426 bits (1098), Expect = e-151
Identities = 122/271 (45%), Positives = 169/271 (62%), Gaps = 21/271 (7%)
Query: 93 NIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDI 152
I D + IG TP+V L G GNV K+E P SVK RIG +M+ AE+ G +
Sbjct: 2 AIYADNSYSIGNTPLVRLKHF--GHNGNVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTL 59
Query: 153 TPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEK 212
T GK +V+ T+GNTG+ +A+VAA +GYK+ +TMP + +LER+ LL G ++LT+ K
Sbjct: 60 TKGKE-IVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAK 118
Query: 213 GLRGALDKAEEIVLNTPNAY-MFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGT 271
G++GA+ KAEEIV + P+ Y M +QF+N AN +IH ++TGPEIW+DT G VD+ VA +GT
Sbjct: 119 GMKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGT 178
Query: 272 GGTITGTGRFLKM-MNKEIKVVGVEPAERSVISGEN----------------AGYVPSIL 314
GG+ITG R +K+ K+I V VEP E VIS AG++P L
Sbjct: 179 GGSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAGEEVKPGPHKIQGIGAGFIPKNL 238
Query: 315 DVQLLDEVIKVTNDEAVNMARRLALEEGLLV 345
D+ ++D V V +D A+ ARRL EEG+L
Sbjct: 239 DLSIIDRVETVDSDTALATARRLMAEEGILA 269
|
| >1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A* Length = 304 | Back alignment and structure |
|---|
Score = 419 bits (1079), Expect = e-148
Identities = 122/259 (47%), Positives = 170/259 (65%), Gaps = 12/259 (4%)
Query: 98 VTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGK- 156
V IG+TP+V L KV E + V KLE + P S+KDR + MI DAEE G + PG
Sbjct: 3 VEGAIGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSG 62
Query: 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRG 216
V+VEPT+GNTG+G+A +AA +GY+LI+TMPA + ER+ +L+AFGAE++LTDPE+ +
Sbjct: 63 QVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRMLA 122
Query: 217 ALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTIT 276
A ++A + A+M QF N AN++ H+++TGPE++E G +D FV GTGGTIT
Sbjct: 123 AREEALRLK-EELGAFMPDQFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTIT 181
Query: 277 GTGRFLKMMNKEIKVVGVEPAERSVISGEN----------AGYVPSILDVQLLDEVIKVT 326
G GR+LK +KV+ VEPA +V+SG G++P LD+ LLD VI+V
Sbjct: 182 GVGRYLKERIPHVKVIAVEPARSNVLSGGKMGQHGFQGMGPGFIPENLDLSLLDGVIQVW 241
Query: 327 NDEAVNMARRLALEEGLLV 345
++A +ARRLA EEGL +
Sbjct: 242 EEDAFPLARRLAREEGLFL 260
|
| >2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus} Length = 308 | Back alignment and structure |
|---|
Score = 412 bits (1062), Expect = e-145
Identities = 129/263 (49%), Positives = 168/263 (63%), Gaps = 12/263 (4%)
Query: 93 NIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDI 152
+T+LIG TP V LN++ + +V KLE M P SVKDRI +MI AE++G +
Sbjct: 3 RTVNSITELIGDTPAVKLNRIVDEDSADVYLKLEFMNPGSSVKDRIALAMIEAAEKAGKL 62
Query: 153 TPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEK 212
PG T +VEPT+GNTG+G+A VAA KGYK ++ MP + +LERR LLRA+GAE++LT +
Sbjct: 63 KPGDT-IVEPTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGAQ 121
Query: 213 GLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTG 272
G+RGA+ KAEE+V +M QQF N AN +IH +TG EI E +D FVA +GTG
Sbjct: 122 GMRGAIAKAEELV-REHGYFMPQQFKNEANPEIHRLTTGKEIVEQMGDQLDAFVAGVGTG 180
Query: 273 GTITGTGRFLKMMNKEIKVVGVEPAERSVISGEN----------AGYVPSILDVQLLDEV 322
GTITG G+ L+ IK+ VEPA+ V+SG AG+VP ILD + D V
Sbjct: 181 GTITGAGKVLREAYPNIKIYAVEPADSPVLSGGKPGPHKIQGIGAGFVPDILDTSIYDGV 240
Query: 323 IKVTNDEAVNMARRLALEEGLLV 345
I VT +EA ARR A EEG+L
Sbjct: 241 ITVTTEEAFAAARRAAREEGILG 263
|
| >2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A* Length = 343 | Back alignment and structure |
|---|
Score = 409 bits (1053), Expect = e-144
Identities = 98/268 (36%), Positives = 158/268 (58%), Gaps = 17/268 (6%)
Query: 93 NIAEDVTQLIGRTPMVYLNKVTEGCV----GNVAAKLESMEPCRSVKDRIGYSMITDAEE 148
I ++ + IG TP+V L+ VTE + KLE P SVKDR+G++++ A +
Sbjct: 12 RIYHNILETIGGTPLVELHGVTEHPRIKKGTRILVKLEYFNPMSSVKDRVGFNIVYQAIK 71
Query: 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208
G + PG ++E T+GNTG+ + AV GY++ + MP++ ++ER+++++AFGAE+ILT
Sbjct: 72 DGRLKPGME-IIESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILT 130
Query: 209 DPEKGLRGALDKAEEIVLNTPNAY-MFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVA 267
+ +KG+ GA+++ +++ P Y + QF N N H T EIWEDT G VDI V+
Sbjct: 131 EGKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHH-YTANEIWEDTDGEVDIVVS 189
Query: 268 AIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGEN----------AGYVPSILDVQ 317
A+GT GT+ G LK K IK++ VEP E +V+ G+ AG++P I +
Sbjct: 190 AVGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKGPHGIQGIGAGFIPDIYKKE 249
Query: 318 LLDEVIKVTNDEAVNMARRLALEEGLLV 345
+DE+I + +A MAR + +G++
Sbjct: 250 FVDEIIPIKTQDAWKMARAVVKYDGIMC 277
|
| >2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A* Length = 303 | Back alignment and structure |
|---|
Score = 397 bits (1022), Expect = e-139
Identities = 104/252 (41%), Positives = 152/252 (60%), Gaps = 5/252 (1%)
Query: 97 DVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGK 156
+ Q IG TP+V L ++ V KLE P SVKDR SMI +AE+ G+I PG
Sbjct: 3 TLEQTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGD 62
Query: 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRG 216
L+E T+GNTG+ +A +AA+KGY++ + MP + + ERR +RA+GAE+IL E+G+ G
Sbjct: 63 V-LIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEG 121
Query: 217 ALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTIT 276
A D A E+ + QF+N N H+ +TGPEIW+ T G + FV+++GT GTIT
Sbjct: 122 ARDLALEMANRGEG-KLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTIT 180
Query: 277 GTGRFLKMMNKEIKVVGVEPAERSVISGEN---AGYVPSILDVQLLDEVIKVTNDEAVNM 333
G RF++ +K + +VG++P E S I G Y+P I + L+DEV+ + +A N
Sbjct: 181 GVSRFMREQSKPVTIVGLQPEEGSSIPGIRRWPTEYLPGIFNASLVDEVLDIHQRDAENT 240
Query: 334 ARRLALEEGLLV 345
R LA+ EG+
Sbjct: 241 MRELAVREGIFC 252
|
| >1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A* Length = 303 | Back alignment and structure |
|---|
Score = 395 bits (1017), Expect = e-139
Identities = 115/264 (43%), Positives = 162/264 (61%), Gaps = 19/264 (7%)
Query: 93 NIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDI 152
+ + +LIG TP+V L+ + + KLE P SVKDR MI DAE+ G +
Sbjct: 9 HHHHMMERLIGSTPIVRLDSID----SRIFLKLEKNNPGGSVKDRPALFMILDAEKRGLL 64
Query: 153 TPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEK 212
G +VEPT+GN G+ IA + A +G+++I+TMP + ++ERR +L+ GAE++LT E
Sbjct: 65 KNG---IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGEL 121
Query: 213 GLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTG 272
G++GA++KA EI A+M QF+N N+ H +TGPEI + +D FVA +GTG
Sbjct: 122 GMKGAVEKALEIS-RETGAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTG 180
Query: 273 GTITGTGRFLK-MMNKEIKVVGVEPAERSVISGEN----------AGYVPSILDVQLLDE 321
GTI+G GR LK +K+V VEPA+ V+SG AG+VP ILD ++DE
Sbjct: 181 GTISGVGRVLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGIGAGFVPKILDRSVIDE 240
Query: 322 VIKVTNDEAVNMARRLALEEGLLV 345
VI V ++EA MAR LA +EGLLV
Sbjct: 241 VITVEDEEAYEMARYLAKKEGLLV 264
|
| >3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3fgp_A* 3dki_A* 3dwi_A* Length = 325 | Back alignment and structure |
|---|
Score = 385 bits (991), Expect = e-134
Identities = 96/264 (36%), Positives = 142/264 (53%), Gaps = 12/264 (4%)
Query: 92 VNIAEDVTQLIGRTPMVYLNKVT-------EGCVGNVAAKLESMEPCRSVKDRIGYSMIT 144
+ + + Q +G TP+V L +++ +G + AKLE P S+KDR MI
Sbjct: 3 MTRYDSLLQALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIE 62
Query: 145 DAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAE 204
AE G + PG T ++EPT+GNTG+ +A A +KGY+LI MP +T++ERR LL +GA+
Sbjct: 63 QAEADGLLRPGAT-ILEPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQ 121
Query: 205 IILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDI 264
II + E G A+ A+E+ P+ M Q+ N AN H+ TGPE+ D +
Sbjct: 122 IIFSAAEGGSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADL-PEITH 180
Query: 265 FVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSV---ISGENAGYVPSILDVQLLDE 321
FVA +GT GT+ GTGRFL+ +K+V EP + + G+VP + D ++L
Sbjct: 181 FVAGLGTTGTLMGTGRFLREHVANVKIVAAEPRYGEGVYALRNMDEGFVPELYDPEILTA 240
Query: 322 VIKVTNDEAVNMARRLALEEGLLV 345
V +AV R L EG+
Sbjct: 241 RYSVGAVDAVRRTRELVHTEGIFA 264
|
| >1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1 Length = 389 | Back alignment and structure |
|---|
Score = 356 bits (916), Expect = e-122
Identities = 61/260 (23%), Positives = 109/260 (41%), Gaps = 13/260 (5%)
Query: 93 NIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPC-RSVKDRIGYSMITDAEESGD 151
D + TP+V V V KLE P SVKDR +I+
Sbjct: 85 PSPLDFFERGKPTPLVRSRLQLPNGV-RVWLKLEWYNPFSLSVKDRPAVEIISRLSR--R 141
Query: 152 ITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPE 211
+ G + + T+ N G+ ++ VA + GY+ V +P + ++L R GA++I+
Sbjct: 142 VEKGSL-VADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEA 200
Query: 212 KGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGC---VDIFVAA 268
L + + QF N AN + H T EI+ + + +
Sbjct: 201 PSTVHLLPRVMKDS-KNEGFVHVNQFYNDANFEAHMRGTAREIFVQSRRGGLALRGVAGS 259
Query: 269 IGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG---ENAGYVPSILDVQLLDEVIKV 325
+GT G ++ +L+ ++ I+ V V+PA+ I G G + I + + + +V
Sbjct: 260 LGTSGHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPGIRRVETGMLW-INMLDISYTLAEV 318
Query: 326 TNDEAVNMARRLALEEGLLV 345
T +EA+ +A +GL++
Sbjct: 319 TLEEAMEAVVEVARSDGLVI 338
|
| >1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A* Length = 435 | Back alignment and structure |
|---|
Score = 352 bits (905), Expect = e-120
Identities = 100/273 (36%), Positives = 149/273 (54%), Gaps = 21/273 (7%)
Query: 93 NIAEDVTQLIGRTPMVYLNKVTE--GCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESG 150
I D+ + IG TPMV +NK+ + G + AK E SVKDRI MI DAE G
Sbjct: 97 KILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDG 156
Query: 151 DITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD- 209
+ PG T ++EPT+GNTG+G+A AAV+GY+ I+ MP + E+ +LRA GAEI+ T
Sbjct: 157 TLKPGDT-IIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPT 215
Query: 210 --PEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVA 267
+ A + PN+++ Q+ N +N H+D+T EI + G +D+ VA
Sbjct: 216 NARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVA 275
Query: 268 AIGTGGTITGTGRFLKMMNKEIKVVGVEP-----AERSVISGEN----------AGYVPS 312
++GTGGTITG R LK +++GV+P AE ++ ++P+
Sbjct: 276 SVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTTYEVEGIGYDFIPT 335
Query: 313 ILDVQLLDEVIKVTNDEAVNMARRLALEEGLLV 345
+LD ++D+ K ++EA AR L +EGLL
Sbjct: 336 VLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLC 368
|
| >3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Length = 527 | Back alignment and structure |
|---|
Score = 353 bits (908), Expect = e-119
Identities = 100/273 (36%), Positives = 149/273 (54%), Gaps = 21/273 (7%)
Query: 93 NIAEDVTQLIGRTPMVYLNKV--TEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESG 150
I ++ ++IG TP+V LN + ++G + AK E + P SVKDRIGY M+ DAEE G
Sbjct: 49 QITPNILEVIGCTPLVKLNNIPASDGIECEMYAKCEFLNPGGSVKDRIGYRMVQDAEEQG 108
Query: 151 DITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDP 210
+ PG T ++EPT+GNTG+G+A AVKGYK I+ MP + E+ LR GA+II T
Sbjct: 109 LLKPGYT-IIEPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPT 167
Query: 211 EKGL---RGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVA 267
E G + A+++ TPN+ + Q+ N N H+D T EI VD+ V
Sbjct: 168 EAAYDSPEGLIYVAQQLQRETPNSIVLDQYRNAGNPLAHYDGTAAEILWQLDNKVDMIVV 227
Query: 268 AIGTGGTITGTGRFLKMMNKEIKVVGVEP-----AERSVISGEN----------AGYVPS 312
+ GT GTI+G GR +K ++VGV+P A + ++ + + P+
Sbjct: 228 SAGTAGTISGIGRKIKEQVPSCQIVGVDPYGSILARPAELNKTDVQFYEVEGIGYDFPPT 287
Query: 313 ILDVQLLDEVIKVTNDEAVNMARRLALEEGLLV 345
+ D ++D K+ + + M+RRL EEGLL
Sbjct: 288 VFDDTVVDVWTKIGDSDCFPMSRRLNAEEGLLC 320
|
| >1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A* Length = 372 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 7e-18
Identities = 53/295 (17%), Positives = 102/295 (34%), Gaps = 63/295 (21%)
Query: 90 HGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDR-IGYSMITDAEE 148
G L +TP+ +++ +V K++S +P S K R IG+ A++
Sbjct: 32 RGSEFMMSGEPLHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQ 91
Query: 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208
G V + GN G+ A+ A G + +P +T L+ GA +
Sbjct: 92 ------GCAHFVCSSAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATCKVV 145
Query: 209 DPEKGLRG-----ALDKAEEIVLNTPNAYMFQQFDNMANLKIH-FD---------STGPE 253
G A + A+ + N P +++ I FD S E
Sbjct: 146 -------GELLDEAFELAKALAKNNPG-WVY----------IPPFDDPLIWEGHASIVKE 187
Query: 254 IWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNK-EIKVVGVEPAE-----RSVISGE-- 305
+ E ++G GG + G + L+ ++ V+ +E + +G+
Sbjct: 188 LKETLWEKPGAIALSVGGGGLLCGVVQGLQECGWGDVPVIAMETFGAHSFHAATTAGKLV 247
Query: 306 NAGYVPSILD---------------VQLLDEVIKVTNDEAVNMARRLALEEGLLV 345
+ + S+ + +++ EAV + +E +LV
Sbjct: 248 SLPKITSVAKALGVKTVGSQALKLFQEHPIFSEVISDQEAVAAIEKFVDDEKILV 302
|
| >2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens} Length = 318 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 3e-17
Identities = 54/284 (19%), Positives = 100/284 (35%), Gaps = 64/284 (22%)
Query: 101 LIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDR-IGYSMITDAEESGDITPGKTVL 159
TP++ +++ V K E+++P S K R IG+ A++ G L
Sbjct: 4 FHVVTPLLESWALSQVAGMPVFLKCENVQPSGSFKIRGIGHFCQEMAKK------GCRHL 57
Query: 160 VEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRG--- 216
V + GN G+ A+ A G + +P ST+L+ L+ GAE+ LT G
Sbjct: 58 VCSSGGNAGIAAAYAARKLGIPATIVLPESTSLQVVQRLQGEGAEVQLT-------GKVW 110
Query: 217 --ALDKAEEIVLNTPNAYMFQQFDNMANLKIH-FD---------STGPEIWEDTLG-CVD 263
A +A+E+ + FD S E+
Sbjct: 111 DEANLRAQELAKRDGWEN------------VPPFDHPLIWKGHASLVQELKAVLRTPPGA 158
Query: 264 IFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAE-----RSVISGE--NAGYVPSILD- 315
+ +A G G L++ + + ++ +E ++ +G+ + S+
Sbjct: 159 LVLAVGGGGLLAGVVAGLLEVGWQHVPIIAMETHGAHCFNAAITAGKLVTLPDITSVAKS 218
Query: 316 --V------------QLLDEVIKVTNDEAVNMARRLALEEGLLV 345
V + EAV+ ++L +E +LV
Sbjct: 219 LGAKTVAARALECMQVCKIHSEVVEDTEAVSAVQQLLDDERMLV 262
|
| >4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A* Length = 398 | Back alignment and structure |
|---|
Score = 75.2 bits (185), Expect = 3e-15
Identities = 51/288 (17%), Positives = 89/288 (30%), Gaps = 59/288 (20%)
Query: 104 RTPMVYLNKVTEGC-VGNVAAKLESM--------------EPCRSVKDRIGYSM-ITDAE 147
TP+ L+ + V + K ES + + ++ + E
Sbjct: 44 PTPLCALDDLANLFGVKKILVKDESKRFGLNAFXMLGGAYAIAQLLCEKYHLDIETLSFE 103
Query: 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207
+ K T GN G G+A+ A G ++ MP + ER + GAE I+
Sbjct: 104 HLKNAIGEKMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIV 163
Query: 208 TDP--EKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFD------STGPEIWEDT- 258
TD + +R + A++ + Q KI + E E
Sbjct: 164 TDMNYDDTVRLTMQHAQQ-----HGWEVVQDTAWEGYTKIPTWIMQGYATLADEAVEQMR 218
Query: 259 ---LGCVDIFVAAIGTGGTITGTGRFLK--MMNKEIKVVGVEPAE-----RSVISGE--- 305
+ + + A G G +L + + + VEP + RS + G+
Sbjct: 219 EMGVTPTHVLLQAGV-GAMAGGVLGYLVDVYSPQNLHSIIVEPDKADCIYRSGVKGDIVN 277
Query: 306 NAGYVPSI---LDV------------QLLDEVIKVTNDEAVNMARRLA 338
G + +I L + I + A R L
Sbjct: 278 VGGDMATIMAGLACGEPNPLGWEILRNCATQFISCQDSVAALGMRVLG 325
|
| >2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis} Length = 360 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 3e-15
Identities = 52/272 (19%), Positives = 98/272 (36%), Gaps = 42/272 (15%)
Query: 103 GRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEP 162
G TP++ +++ + K+E + P S KDR +TDA G+ ++
Sbjct: 37 GGTPLIAATNLSKQTGCTIHLKVEGLNPTGSFKDRGMTMAVTDALAH-----GQRAVLCA 91
Query: 163 TTGNTGLGIAFVAAVKGYKLIVTMPAST-NLERRILLRAFGAEIILTDPEKGLRG-ALDK 220
+TGNT A AA G V +P + + GA+II D G L+
Sbjct: 92 STGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQID---GNFDDCLEL 148
Query: 221 AEEIVLNTPNAYMFQQFDNMANL---KIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITG 277
A ++ + P N + K + EI + D+ +G G IT
Sbjct: 149 ARKMAADFPTIS-LVNSVNPVRIEGQK----TAAFEIVDVLGTAPDVHALPVGNAGNITA 203
Query: 278 TGR-FLKMMNKEI-----KVVGVEPA-------------ERSVISGENAGYVPSILD-VQ 317
+ + + + +++G + A ++ + G S V+
Sbjct: 204 YWKGYTEYHQLGLIDKLPRMLGTQAAGAAPLVLGEPVSHPETIATAIRIGSPASWTSAVE 263
Query: 318 LLDE----VIKVTNDEAVNMARRLALEEGLLV 345
+ + +++E + +A EG+ V
Sbjct: 264 AQQQSKGRFLAASDEEILAAYHLVARVEGVFV 295
|
| >2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus} Length = 352 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 4e-15
Identities = 53/271 (19%), Positives = 99/271 (36%), Gaps = 39/271 (14%)
Query: 103 GRTPMVYLNKVTE--GCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLV 160
G TP++ + + G G + K E + P S KDR I+ A E+G K ++
Sbjct: 29 GNTPLIEADNLARAIGFKGKIYLKYEGLNPTGSFKDRGMTLAISKAVEAG-----KRAVI 83
Query: 161 EPTTGNTGLGIAFVAAVKGYKLIVTMPAST-NLERRILLRAFGAEIILTDPEKGLRGALD 219
+TGNT A AA G + V +P + + +GA+++ G D
Sbjct: 84 CASTGNTSASAAAYAARAGLRAYVLLPKGAVAIGKLSQAMIYGAKVLAIQ------GTFD 137
Query: 220 KAEEIVLNTPNAYMFQQFDNMANLKIHFDST-GPEIWEDTLGCVDIFVAAIGTGGTITGT 278
A IV + + +++ +I T EI + D +G G IT
Sbjct: 138 DALNIVRKIGENFPVEIVNSVNPYRIEGQKTAAFEICDTLGEAPDYHFIPVGNAGNITAY 197
Query: 279 GR-FLKMMNKEI-----KVVGVEPA-------------ERSVISGENAGYVPSILD-VQL 318
+ F + +++G + +++ + G S ++
Sbjct: 198 WKGFKIYYEEGKITKLPRMMGWQAEGAAPIVKGYPIKNPQTIATAIKIGNPYSWKSALKA 257
Query: 319 LDE----VIKVTNDEAVNMARRLALEEGLLV 345
E + V++ E + + +A EG+
Sbjct: 258 AQESGGKIDAVSDSEILYAYKLIASTEGVFC 288
|
| >3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} PDB: 3l6r_A* 3hmk_A* 3l6c_A* Length = 346 | Back alignment and structure |
|---|
Score = 73.7 bits (182), Expect = 6e-15
Identities = 54/284 (19%), Positives = 106/284 (37%), Gaps = 49/284 (17%)
Query: 95 AEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITP 154
++ I TP++ + + + N+ K E + S K R + +
Sbjct: 16 HINIRDSIHLTPVLTSSILNQLTGRNLFFKCELFQKTGSFKIRGALNAVRSLVPDALERK 75
Query: 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGL 214
K V V ++GN G + + A ++G + +P + +++ ++A+GA I+ +P
Sbjct: 76 PKAV-VTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEP--SD 132
Query: 215 RGALDKAEEIVLNTPNAYMFQQFDNMANLKIH-FD---------STGPEIWEDTLGCVDI 264
+ A+ + T + +H + E+ + VD
Sbjct: 133 ESRENVAKRVTEET--EGIM----------VHPNQEPAVIAGQGTIALEVLNQ-VPLVDA 179
Query: 265 FVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAE-----RSVISGE---NAGYVPSILD- 315
V +G GG + G +K + +KV EP+ +S + G+ N +I D
Sbjct: 180 LVVPVGGGGMLAGIAITVKALKPSVKVYAAEPSNADDCYQSKLKGKLMPNLYPPETIADG 239
Query: 316 -------------VQLLDEVIKVTNDEAVNMARRLALEEGLLVM 346
L+D++ VT DE A +L E L++
Sbjct: 240 VKSSIGLNTWPIIRDLVDDIFTVTEDEIKC-ATQLVWERMKLLI 282
|
| >1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A* Length = 323 | Back alignment and structure |
|---|
Score = 72.9 bits (180), Expect = 1e-14
Identities = 50/288 (17%), Positives = 108/288 (37%), Gaps = 60/288 (20%)
Query: 95 AEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMI---TDAE-ESG 150
+E + + +TP++ + V + V V K E+ + + K R + + +A+ ++G
Sbjct: 17 SERIKKFANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLNEAQRKAG 76
Query: 151 DITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDP 210
+T ++GN IA A + G + MP + + +G ++I+ D
Sbjct: 77 VLTF--------SSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDR 128
Query: 211 EKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIH-FD---------STGPEIWEDTLG 260
A+EI I +D + E++E+ +G
Sbjct: 129 --YKDDREKMAKEISERE--GLTI----------IPPYDHPHVLAGQGTAAKELFEE-VG 173
Query: 261 CVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAE-----RSVISGE--NAGYVPSI 313
+D +G GG ++G+ + +V GVEP +S G + +I
Sbjct: 174 PLDALFVCLGGGGLLSGSALAARHFAPNCEVYGVEPEAGNDGQQSFRKGSIVHIDTPKTI 233
Query: 314 LD---------------VQLLDEVIKVTNDEAVNMARRLALEEGLLVM 346
D + +D+++ V+++E ++ + +V+
Sbjct: 234 ADGAQTQHLGNYTFSIIKEKVDDILTVSDEELID-CLKFYAARMKIVV 280
|
| >3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A Length = 351 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 1e-13
Identities = 60/279 (21%), Positives = 100/279 (35%), Gaps = 55/279 (19%)
Query: 103 GRTPMVYLN--KVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLV 160
G TP++ L + + AK E + P S KDR ++ A E G +
Sbjct: 27 GSTPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGMTLAVSKAVEGG-----AQAVA 81
Query: 161 EPTTGNTGLGIAFVAAVKGYKLIVTMPAS-TNLERRILLRAFGAEIILTDPEKGLRG-AL 218
+TGNT A AA G IV +PA L + GA I+ + G AL
Sbjct: 82 CASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVE---GNFDDAL 138
Query: 219 DKAEEIV-------LNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCV-DIFVAAIG 270
+++ +N+ N + + +A F E+ ++ LG +G
Sbjct: 139 RLTQKLTEAFPVALVNSVNPHRLEGQKTLA-----F-----EVVDE-LGDAPHYHALPVG 187
Query: 271 TGGTITGTGR-FLKMMNKEI-----KVVGVEPA-------------ERSVISGENAGYVP 311
G IT + +++G + A ++ + G
Sbjct: 188 NAGNITAHWMGYKAYHALGKAKRLPRMLGFQAAGAAPLVLGRPVERPETLATAIRIGNPA 247
Query: 312 SILD-VQLLDE----VIKVTNDEAVNMARRLALEEGLLV 345
S V+ +E + VT++E + R LA EEG+
Sbjct: 248 SWQGAVRAKEESGGVIEAVTDEEILFAYRYLAREEGIFC 286
|
| >1ve5_A Threonine deaminase; riken structural genomics/Pro initiative, RSGI, structural genomics, lyase; HET: PLP; 2.15A {Thermus thermophilus} SCOP: c.79.1.1 Length = 311 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 2e-13
Identities = 57/289 (19%), Positives = 99/289 (34%), Gaps = 60/289 (20%)
Query: 95 AEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAE-ESGDIT 153
+ RTP++ + + K E ++ S K R S E G +
Sbjct: 11 FRRIAPYTHRTPLLTSRLLDGLLGKRLLLKAEHLQKTGSFKARGALSKALALENPKGLLA 70
Query: 154 PGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKG 213
++GN G+A+ A V G K +V MP + ++ RA+GAE++
Sbjct: 71 V--------SSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVDRGV--T 120
Query: 214 LRGALDKAEEIVLNTPNAYMFQQFDNMANLKIH-FD---------STGPEIWEDT---LG 260
+ + A + T Y IH FD + G E+
Sbjct: 121 AKNREEVARALQEET--GYAL----------IHPFDDPLVIAGQGTAGLELLAQAGRMGV 168
Query: 261 CVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAE-----RSVISGE---NAGYVPS 312
+A +G GG + G +K ++ V+GVEP RS+ +G +
Sbjct: 169 FPGAVLAPVGGGGLLAGLATAVKALSPTTLVLGVEPEAADDAKRSLEAGRILRLEAPPRT 228
Query: 313 ILD---------------VQLLDEVIKVTNDEAVNMARRLALEEGLLVM 346
D + +D ++ V+ + + A RL V+
Sbjct: 229 RADGVRTLSLGERTFPILRERVDGILTVSEEALLE-AERLLFTRTKQVV 276
|
| >3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A Length = 442 | Back alignment and structure |
|---|
Score = 69.8 bits (171), Expect = 2e-13
Identities = 41/263 (15%), Positives = 78/263 (29%), Gaps = 45/263 (17%)
Query: 120 NVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKG 179
V A E + + + E ++ V +TGN GL I ++A G
Sbjct: 125 EVLAHAEKLALEAGLLTLDDDYSKLLSPEFKQFFSQYSIAV-GSTGNLGLSIGIMSARIG 183
Query: 180 YKLIVTMPASTNLERRILLRAFGAEIILTDP--EKGLRGALDKAEEIVLNTPNAYMFQQF 237
+K+ V M A ++ LR+ G ++ + + A+ PN +
Sbjct: 184 FKVTVHMSADARAWKKAKLRSHGVTVVEYEQDYGVAVEEGRKAAQS----DPNCFFIDDE 239
Query: 238 DN---------MANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKE 288
++ ++ D + +++ GG
Sbjct: 240 NSRTLFLGYSVAG-QRLKAQFAQQGRIVDADNPLFVYLPCGVGGGPGGVAFGLKLAFGDH 298
Query: 289 IKVVGVEPAE-----RSVISGEN--------AGYVPSI---LDV------------QLLD 320
+ EP V +G + + L V +LLD
Sbjct: 299 VHCFFAEPTHSPCMLLGVHTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAMERLLD 358
Query: 321 EVIKVTNDEAVNMARRLALEEGL 343
+++ +M LA EEG+
Sbjct: 359 GFYTLSDQTMYDMLGWLAQEEGI 381
|
| >3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive PROT jasmonic acid pathway, jasmonic acid,structural genomics; HET: LLP 15P; 2.35A {Solanum lycopersicum} Length = 366 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 1e-12
Identities = 60/273 (21%), Positives = 95/273 (34%), Gaps = 69/273 (25%)
Query: 98 VTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMI---TDAE-ESGDIT 153
V + +P+ K+++ N K E + S K R Y+M+ + E + G IT
Sbjct: 54 VYDVAIESPLELAEKLSDRLGVNFYIKREDKQRVFSFKLRGAYNMMSNLSREELDKGVIT 113
Query: 154 PGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKG 213
+ GN G+A + MP +T + +RA G +++L
Sbjct: 114 A--------SAGNHAQGVALAGQRLNCVAKIVMPTTTPQIKIDAVRALGGDVVLY----- 160
Query: 214 LRG-----ALDKAEEIVLNTPNAYMFQQFDNMANLKIH-FD---------STGPEIWEDT 258
G A A E+ + D + I FD + G EI
Sbjct: 161 --GKTFDEAQTHALEL----------SEKDGLKY--IPPFDDPGVIKGQGTIGTEINRQ- 205
Query: 259 LGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAE-----RSVISGENA--GYVP 311
L + +G GG I G F K + K++GVEP S+ G V
Sbjct: 206 LKDIHAVFIPVGGGGLIAGVATFFKQIAPNTKIIGVEPYGAASMTLSLHEGHRVKLSNVD 265
Query: 312 SILD---V------------QLLDEVIKVTNDE 329
+ D V +L+D ++ V ND
Sbjct: 266 TFADGVAVALVGEYTFAKCQELIDGMVLVANDG 298
|
| >1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2 Length = 514 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 2e-12
Identities = 60/273 (21%), Positives = 102/273 (37%), Gaps = 69/273 (25%)
Query: 98 VTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMI---TDAE-ESGDIT 153
V + TP+ + K++ + K E +P S K R Y+M+ T+ + G IT
Sbjct: 25 VYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQKAHGVIT 84
Query: 154 PGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKG 213
+ GN G+AF +A G K ++ MP +T + +R FG E++L
Sbjct: 85 A--------SAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLLH----- 131
Query: 214 LRG-----ALDKAEEIVLNTPNAYMFQQFDNMANLKIH-FD---------STGPEIWEDT 258
G A KA E+ Q + FD + E+ +
Sbjct: 132 --GANFDEAKAKAIEL----------SQQQGFTW--VPPFDHPMVIAGQGTLALELLQQ- 176
Query: 259 LGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAE-----RSVISGE--NAGYVP 311
+D +G GG G +K + +IKV+ VE + ++ +G + V
Sbjct: 177 DAHLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSACLKAALDAGHPVDLPRVG 236
Query: 312 SILD---V------------QLLDEVIKVTNDE 329
+ V + LD++I V +D
Sbjct: 237 LFAEGVAVKRIGDETFRLCQEYLDDIITVDSDA 269
|
| >1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme, S-adenosyl-methionine, allostery; 2.25A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A* Length = 486 | Back alignment and structure |
|---|
Score = 65.6 bits (160), Expect = 6e-12
Identities = 48/288 (16%), Positives = 93/288 (32%), Gaps = 60/288 (20%)
Query: 103 GRTPMVYLNKVTEGCVG--NVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLV 160
G + + + + + +G ++ K + S KD +++ + +
Sbjct: 129 GNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVG 188
Query: 161 EPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRIL-LRAFGAEIILTDPEKGLR-GAL 218
+TG+T ++ A G IV +PA+ +++ A GA ++ D G +
Sbjct: 189 CASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSID---TDFDGCM 245
Query: 219 DKAEEIV-------LNTPNAYMFQ-QFDNMANLKIHFDSTGPEIWEDTLGCV-DIFVAAI 269
EI N+ N+ + Q K + EI + V D +
Sbjct: 246 KLIREITAELPIYLANSLNSLRLEGQ-------K----TAAIEILQQFDWQVPDWVIVPG 294
Query: 270 GTGGTITGTGR-FLKMMNKEI-----KVVGVEPA---------------------ERSVI 302
G G I + F + ++V + A +
Sbjct: 295 GNLGNIYAFYKGFKXCQELGLVDRIPRMVCAQAANANPLYLHYKSGWKDFKPMTASTTFA 354
Query: 303 SGENAGYVPSILD-VQLLDE----VIKVTNDEAVNMARRLALEEGLLV 345
S G SI V L + V + T +E ++ A A G+ +
Sbjct: 355 SAIQIGDPVSIDRAVYALKKCNGIVEEATEEELMD-AMAQADSTGMFI 401
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 7e-06
Identities = 47/389 (12%), Positives = 110/389 (28%), Gaps = 129/389 (33%)
Query: 15 QLLPPHPLNIASQKRHRFARFKTSSLSSINGALATRRRILPIVASAKAGAAASSSSSSLY 74
Q+ + ++ R + + AL R ++ G S + +
Sbjct: 124 QVFAKYNVS----------RLQP--YLKLRQALLELRPAKNVLIDGVLG----SGKTWVA 167
Query: 75 ATSTREIEKEEGNDFHG--VNIAEDVTQLIGRTPMVYLNKVTEGCV---GNVAAKLESME 129
+ + DF +N+ +P L + + N ++ +
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNC------NSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 130 PCR----SVKDRIGYSM--------------ITDAE--ESGDITPGKTVLVEPTTGNTGL 169
+ S++ + + + +A+ + ++ +L+ TT
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL--SCKILL--TTRFKQ- 276
Query: 170 GIAFVAAVKGYKLIVTMPASTNLERR----ILLRAFG-------AEIILTDPEK-GLRGA 217
+ + I S L +LL+ E++ T+P + +
Sbjct: 277 -VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335
Query: 218 L----------------DKAEEIV---LNTPNAYMFQQ-FDNMA----NLKIHFDSTGPE 253
DK I+ LN +++ FD ++ + I P
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI------PT 389
Query: 254 -----IWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGENAG 308
IW D ++ ++ VV + + S++ +
Sbjct: 390 ILLSLIWFD--------------------------VIKSDVMVVVNKLHKYSLVEKQPKE 423
Query: 309 YVPSILDVQLLDEVIKVTNDEAVNMARRL 337
SI + L +KV + + R +
Sbjct: 424 STISIPSIYLE---LKVKLENEYALHRSI 449
|
| >1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A* Length = 325 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 1e-04
Identities = 37/197 (18%), Positives = 70/197 (35%), Gaps = 17/197 (8%)
Query: 165 GNTGLGIAFVAAVKGYKLIVTMPASTNLERRILL-RAFGAEIILTDPEKG---LRGALDK 220
N A G I+ + L+ LL + G E + D + ++ A +
Sbjct: 81 SNHAFVTGLAAKKLGLDAILVLRGKEELKGNYLLDKIMGIETRVYDAKDSFELMKYAEEI 140
Query: 221 AEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGR 280
AEE+ Y+ + + EI + D V A G+GGT+ G
Sbjct: 141 AEELKREGRKPYVIPPGGASPIGTLGYVRAVGEIATQSEVKFDSIVVAAGSGGTLAGLSL 200
Query: 281 FLKMMNKEIKVVGV------EPAERSVISGENAGYVPSILDVQLLDEVIK-------VTN 327
L ++N++I+ VG+ E + + + V++ E+
Sbjct: 201 GLSILNEDIRPVGIAVGRFGEVMTSKLDNLIKEAAELLGVKVEVRPELYDYSFGEYGKIT 260
Query: 328 DEAVNMARRLALEEGLL 344
E + R++ EG++
Sbjct: 261 GEVAQIIRKVGTREGII 277
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 347 | |||
| 3vc3_A | 344 | Beta-cyanoalnine synthase; beta-cyanoalanine synth | 100.0 | |
| 4aec_A | 430 | Cysteine synthase, mitochondrial; lyase, cysteine | 100.0 | |
| 3tbh_A | 334 | O-acetyl serine sulfhydrylase; cysteine synthase, | 100.0 | |
| 1z7w_A | 322 | Cysteine synthase; transferase; HET: PLP; 2.20A {A | 100.0 | |
| 3dwg_A | 325 | Cysteine synthase B; sulfur carrier protein comple | 100.0 | |
| 2v03_A | 303 | Cysteine synthase B; pyridoxal phosphate, cysteine | 100.0 | |
| 2q3b_A | 313 | Cysteine synthase A; pyridoxal-5'-phosphate, sulph | 100.0 | |
| 1y7l_A | 316 | O-acetylserine sulfhydrylase, O-acetylserine (thio | 100.0 | |
| 2pqm_A | 343 | Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.8 | 100.0 | |
| 1ve1_A | 304 | O-acetylserine sulfhydrylase; PLP, transferase, ri | 100.0 | |
| 2egu_A | 308 | Cysteine synthase; O-acetylserine sulfhydrase, str | 100.0 | |
| 1o58_A | 303 | O-acetylserine sulfhydrylase; TM0665, structural g | 100.0 | |
| 3pc3_A | 527 | CG1753, isoform A; CBS, synthase, PLP, heme, amino | 100.0 | |
| 1jbq_A | 435 | B, cystathionine beta-synthase, serine sulfhydrase | 100.0 | |
| 3l6b_A | 346 | Serine racemase; pyridoxal phosphate, PLP, isomera | 100.0 | |
| 4h27_A | 364 | L-serine dehydratase/L-threonine deaminase; PLP de | 100.0 | |
| 1p5j_A | 372 | L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo | 100.0 | |
| 2gn0_A | 342 | Threonine dehydratase catabolic; TDCB, biodegradat | 100.0 | |
| 2d1f_A | 360 | Threonine synthase; amino acid synthesis, pyridoxa | 100.0 | |
| 3aey_A | 351 | Threonine synthase; PLP, pyridoxal phosphate, lyas | 100.0 | |
| 1ve5_A | 311 | Threonine deaminase; riken structural genomics/Pro | 100.0 | |
| 3ss7_X | 442 | D-serine dehydratase; type II fold, ALFA,beta-elim | 100.0 | |
| 1v71_A | 323 | Serine racemase, hypothetical protein C320.14 in c | 100.0 | |
| 2zsj_A | 352 | Threonine synthase; PLP dependent enzyme, lyase; H | 100.0 | |
| 2rkb_A | 318 | Serine dehydratase-like; PLP bound enzyme, enzyme | 100.0 | |
| 1tdj_A | 514 | Biosynthetic threonine deaminase; allostery, coope | 100.0 | |
| 3iau_A | 366 | Threonine deaminase; pyridoxal phosphate, amino-ac | 100.0 | |
| 1wkv_A | 389 | Cysteine synthase; homodimer, open alpha/beta fold | 100.0 | |
| 1j0a_A | 325 | 1-aminocyclopropane-1-carboxylate deaminase; PLP d | 100.0 | |
| 4d9b_A | 342 | D-cysteine desulfhydrase; fold type II PLP-depende | 100.0 | |
| 1f2d_A | 341 | 1-aminocyclopropane-1-carboxylate deaminase; carbo | 100.0 | |
| 4d9i_A | 398 | Diaminopropionate ammonia-lyase; fold type II PLP- | 100.0 | |
| 1tzj_A | 338 | ACC deaminase, 1-aminocyclopropane-1-carboxylate d | 100.0 | |
| 1qop_B | 396 | Tryptophan synthase beta chain; lyase, carbon-oxyg | 100.0 | |
| 1v8z_A | 388 | Tryptophan synthase beta chain 1; beta+alpha, rike | 100.0 | |
| 1x1q_A | 418 | Tryptophan synthase beta chain; structural genomic | 100.0 | |
| 2o2e_A | 422 | Tryptophan synthase beta chain; amino-acid biosynt | 100.0 | |
| 1e5x_A | 486 | Threonine synthase; threonine biosynthesis, PLP en | 100.0 | |
| 1vb3_A | 428 | Threonine synthase; PLP-dependent enzyme, lyase; H | 100.0 | |
| 1kl7_A | 514 | Threonine synthase; threonine synthesis, pyridoxal | 100.0 | |
| 4f4f_A | 468 | Threonine synthase; structural genomics, niaid, na | 100.0 | |
| 3v7n_A | 487 | Threonine synthase; ssgcid, structural genomics, s | 100.0 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 94.42 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 93.5 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 93.28 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 93.22 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 92.78 | |
| 1vp8_A | 201 | Hypothetical protein AF0103; putative pyruvate kin | 92.6 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 92.31 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 92.29 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 91.92 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 91.84 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 91.65 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 91.54 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 91.53 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 91.09 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 90.85 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 90.72 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 90.7 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 90.68 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 90.37 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 90.29 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 90.26 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 90.24 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 90.18 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 90.16 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 90.11 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 89.87 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 89.8 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 89.63 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 89.55 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 89.41 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 89.15 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 89.11 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 88.92 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 88.83 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 88.61 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 88.55 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 88.55 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 88.52 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 88.5 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 88.47 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 88.35 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 88.29 | |
| 3iup_A | 379 | Putative NADPH:quinone oxidoreductase; YP_296108.1 | 88.26 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 88.1 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 87.83 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 87.63 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 87.58 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 87.39 | |
| 1t57_A | 206 | Conserved protein MTH1675; structural genomics, FM | 86.61 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 86.36 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 86.33 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 86.21 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 86.06 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 85.9 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 85.41 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 84.91 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 84.82 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 84.77 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 84.75 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 84.55 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 84.05 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 83.84 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 83.44 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 83.4 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 82.99 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 82.68 | |
| 3s8m_A | 422 | Enoyl-ACP reductase; rossmann fold, oxidoreductase | 82.68 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 82.59 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 82.12 | |
| 3tpf_A | 307 | Otcase, ornithine carbamoyltransferase; structural | 82.11 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 82.1 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 82.04 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 81.72 | |
| 3zu3_A | 405 | Putative reductase YPO4104/Y4119/YP_4011; oxidored | 81.61 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 81.41 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 80.83 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 80.57 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 80.37 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 80.32 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 80.14 |
| >3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-56 Score=432.45 Aligned_cols=255 Identities=59% Similarity=0.980 Sum_probs=234.0
Q ss_pred chhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHH
Q 019047 93 NIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIA 172 (347)
Q Consensus 93 ~~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA 172 (347)
.+.+.|.+.+|+|||+++++|++.+|++||+|+|++|||||||+|+|.+++.+|+++|.+.+|++.||++|+||||.|+|
T Consensus 24 ~i~~~i~~lIG~TPLv~~~~Ls~~~G~~IylK~E~lnptGSfK~RgA~~~i~~a~~~g~l~~g~~~Vv~aSsGN~g~alA 103 (344)
T 3vc3_A 24 NIKKHVSQLIGRTPLVYLNKVTEGCGAYVAVKQEMMQPTASIADRPAYAMITDAEEKNLITPGKTTLIEPTSGNMGISMA 103 (344)
T ss_dssp SCBSSGGGGSCCCCEEECCSTTTTCCSEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTCCCTTTCEEEEECSSHHHHHHH
T ss_pred hhhccHhhhcCCCceEECcccchhhCCEEEEEecCCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCEEEEeCCcHHHHHHH
Confidence 45677999999999999999999999999999999999999999999999999999999999888899999999999999
Q ss_pred HHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHH
Q 019047 173 FVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGP 252 (347)
Q Consensus 173 ~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~ 252 (347)
++|+.+|++|+||||++++..|+.+|+.|||+|+.++...+..++...+.+++.+.++.+++++|+|+.+++.||+|++.
T Consensus 104 ~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~np~~~~a~~~t~g~ 183 (344)
T 3vc3_A 104 FMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPAKGMGGTVKKAYELLENTPNAHMLQQFSNPANTQVHFETTGP 183 (344)
T ss_dssp HHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHSTTEECCCTTTCHHHHHHHHHTHHH
T ss_pred HHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCCCcchHHHHHHHHHHhhccCceeccccccchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999986555566777777777777799999999999998889999999
Q ss_pred HHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccccCC----------CCCCCchhccccccCeE
Q 019047 253 EIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGE----------NAGYVPSILDVQLLDEV 322 (347)
Q Consensus 253 Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~g~----------~~~~~p~~l~~~~vd~~ 322 (347)
||++|+++.+|+||+|+|+||+++|++.++|+.+|+++||+|||.+++.+.+. ..+..+.....+.+|++
T Consensus 184 EI~eq~~~~~d~vv~~vGgGG~~~Gi~~~~k~~~p~v~vigVep~~s~~l~~~~~~~~~i~g~g~~~~~~~~~~~~~d~~ 263 (344)
T 3vc3_A 184 EIWEDTNGQVDIFVMGIGSGGTVSGVGQYLKSKNPNVKIYGVEPSESNVLNGGKPGPHHITGNGVGFKPDILDLDVMEKV 263 (344)
T ss_dssp HHHHHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEEGGGCGGGTCCCCCCSCTTSCCSSCCTTCCGGGCSEE
T ss_pred HHHHHhCCCceEEEEecCCccchHHHhhhhHhhCCCceEEEEcCCCChhhcCCCCCCeeEecccccccCcccchhhceEE
Confidence 99999988999999999999999999999999999999999999988766542 23445556677889999
Q ss_pred EEeCHHHHHHHHHHHHHhcCccccC
Q 019047 323 IKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 323 v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
+.|+|+|+++++++|+++|||++||
T Consensus 264 v~v~d~eai~a~~~L~~~eGi~v~~ 288 (344)
T 3vc3_A 264 LEVSSEDAVNMARVLALKEGLMVGI 288 (344)
T ss_dssp EEECHHHHHHHHHHHHHHHCCCBCH
T ss_pred EEECHHHHHHHHHHHHHHCCCEEeh
Confidence 9999999999999999999999985
|
| >4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-55 Score=433.11 Aligned_cols=259 Identities=64% Similarity=1.089 Sum_probs=239.8
Q ss_pred CCCCchhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhH
Q 019047 89 FHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTG 168 (347)
Q Consensus 89 ~~~~~~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g 168 (347)
++.....+++...+++|||+++++|++.+|++||+|+|++|||||||+|++.+++.+++++|.+.+|..+||++|+||||
T Consensus 108 ~~~~~~~~~i~~~ig~TPLv~l~~Ls~~~g~~I~lK~E~lnptGSfKdRgA~~~i~~A~~~G~l~~g~~~VV~aSsGNhG 187 (430)
T 4aec_A 108 PDGLNIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTG 187 (430)
T ss_dssp TSSCSCBSSGGGGSSCCCEEECCGGGTTCSSEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTSCCTTTCEEEEECSSHHH
T ss_pred ccccchhhhhhccCCCCCeEEChhhhhhcCCeEEEEECCCCCCCCHHHHHHHHHHHHHHHcCCCCCCCcEEEEECCCHHH
Confidence 34556678899999999999999999999999999999999999999999999999999999999987889999999999
Q ss_pred HHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHH
Q 019047 169 LGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFD 248 (347)
Q Consensus 169 ~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ 248 (347)
+|+|++|+.+|++|+||||++++..|+.+++.+||+|+.++...+++++++++.+++++.++++|+++|+|+.+++.||.
T Consensus 188 ~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~~~~~~~a~~~a~el~~~~~~~~~i~~~~np~~~~aG~~ 267 (430)
T 4aec_A 188 IGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYE 267 (430)
T ss_dssp HHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHSTTEEECCTTTCTHHHHHHHH
T ss_pred HHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECCCCChHHHHHHHHHHHHhcCCcEEecCCCCccHHHHHHH
Confidence 99999999999999999999999999999999999999998655678999999999998778999999999999778999
Q ss_pred HHHHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccccC----------CCCCCCchhccccc
Q 019047 249 STGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG----------ENAGYVPSILDVQL 318 (347)
Q Consensus 249 ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~g----------~~~~~~p~~l~~~~ 318 (347)
|++.||++|+++.+|+||+|+|+||+++|++.++|+.+++++||||||.+++.+.+ ...+..|+.+.++.
T Consensus 268 T~a~EI~eQl~~~~D~vVvpvG~GGtlaGi~~~lk~~~p~~kVigVep~~s~~l~~g~~~~~~i~Gl~~~~~p~~l~~~~ 347 (430)
T 4aec_A 268 TTGPEIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFIPKNLDQKI 347 (430)
T ss_dssp THHHHHHHHTTSCEEEEEEECSSSHHHHHHHHHHHHHCTTSEEEEEEEGGGCGGGTCCCCCCSCTTSCCSSCCTTCCTTT
T ss_pred HHHHHHHHHcCCCCCEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEEeCCCcHhhCCCccceeehhccCCCCcHHHHHHh
Confidence 99999999997789999999999999999999999999999999999998765543 33456788888889
Q ss_pred cCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 319 LDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 319 vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
+|+++.|+|+|+++++++|+++|||++||
T Consensus 348 vd~~v~Vsd~ea~~a~r~La~~eGi~vep 376 (430)
T 4aec_A 348 MDEVIAISSEEAIETAKQLALKEGLMVGI 376 (430)
T ss_dssp CSEEEEECHHHHHHHHHHHHHHHCCCBCH
T ss_pred CCeEEEECHHHHHHHHHHHHHHCCCEEeh
Confidence 99999999999999999999999999986
|
| >3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-54 Score=415.56 Aligned_cols=256 Identities=46% Similarity=0.792 Sum_probs=235.4
Q ss_pred CCchhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHH
Q 019047 91 GVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLG 170 (347)
Q Consensus 91 ~~~~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~A 170 (347)
+....+++...+++|||+++++| +.+|++||+|+|++|||||||+|++.+++..+.++|.+++|+++|+++|+||||+|
T Consensus 8 i~~~~~~i~~~ig~TPL~~l~~l-~~~g~~i~~K~E~~~ptGSfK~R~a~~~i~~a~~~g~l~~g~~vvv~aSsGN~g~a 86 (334)
T 3tbh_A 8 SKNVAQSIDQLIGQTPALYLNKL-NNTKAKVVLKMECENPMASVKDRLGFAIYDKAEKEGKLIPGKSIVVESSSGNTGVS 86 (334)
T ss_dssp TTSCCSSGGGGSSCCCEEECCTT-CCSSSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTSCCTTTCEEEEECSSHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEECCcc-cCCCCEEEEEeCCCCCccCcHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCHHHHH
Confidence 34456788999999999999999 88889999999999999999999999999999999998888765699999999999
Q ss_pred HHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHH
Q 019047 171 IAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDST 250 (347)
Q Consensus 171 lA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti 250 (347)
+|++|+.+|++|+||||++++..|+.+++.+||+|+.++.+.+++++++.+.+++++.++++|+++|+|+.+++.||.|+
T Consensus 87 lA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~i~~~~np~n~~~g~~t~ 166 (334)
T 3tbh_A 87 LAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAALGMKGAVAMAKKIVAANPNAVLADQFATKYNALIHEETT 166 (334)
T ss_dssp HHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHCTTEEECCTTTCHHHHHHHHHTH
T ss_pred HHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCchHHHHHHHHHHHhCCCEEECCccCChhHHHHHHHHH
Confidence 99999999999999999999999999999999999999865557899999999998877899999999999887899999
Q ss_pred HHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccccC----------CCCCCCchhccccccC
Q 019047 251 GPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG----------ENAGYVPSILDVQLLD 320 (347)
Q Consensus 251 ~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~g----------~~~~~~p~~l~~~~vd 320 (347)
+.||++|+++.+|+||+|+|+||+++|++.++|+.+++++||||||.+++.+.+ ...+..|+.+.++.+|
T Consensus 167 ~~Ei~~q~~~~~d~vv~pvG~GG~~aGi~~~~k~~~p~~~vigVe~~~~~~~~~g~~~~~~~~gi~~~~~~~~~~~~~~d 246 (334)
T 3tbh_A 167 GPEIWEQTNHNVDCFIAGVGTGGTLTGVARALKKMGSHARIVAVEPTESPVLSGGKPGPHKIQGIGPGFVPDVLDRSLID 246 (334)
T ss_dssp HHHHHHHTTSCCSEEEEECSSSHHHHHHHHHHHHTTCCCEEEEEEETTSCTTTTCCCCCCSCTTSCCSSCCTTCCGGGCS
T ss_pred HHHHHHHhCCCCCEEEeccCCcHhHHHHHHHHHHhCCCCEEEEEeeCCchHhhCCCcCCeecCCCCCCcCCHHHHHHhCC
Confidence 999999997789999999999999999999999999999999999998865432 3345678888889999
Q ss_pred eEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 321 EVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 321 ~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
+++.|+|+|+++++++|+++|||++||
T Consensus 247 ~~~~V~d~e~~~a~~~l~~~egi~~ep 273 (334)
T 3tbh_A 247 EVLCVAGDDAIETALKLTRSDGVFCGF 273 (334)
T ss_dssp EEEEECHHHHHHHHHHHHHHHCCCBCH
T ss_pred EEEEECHHHHHHHHHHHHHHcCeEEcH
Confidence 999999999999999999999999986
|
| >1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-53 Score=408.81 Aligned_cols=253 Identities=64% Similarity=1.081 Sum_probs=233.0
Q ss_pred hhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHH
Q 019047 95 AEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFV 174 (347)
Q Consensus 95 ~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~a 174 (347)
.+++...+++|||+++++|++.+|++||+|+|++|||||||||++.+++.+++++|.++|+..+|+++|+||||+|+|++
T Consensus 6 ~~~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGSfK~R~a~~~l~~a~~~G~~~~~~~~vv~assGN~g~alA~a 85 (322)
T 1z7w_A 6 AKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFT 85 (322)
T ss_dssp CSSGGGGSSCCCEEECCGGGTTCSSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHH
T ss_pred hhHHHHhcCCCCeEECccccccCCceEEEEecccCCCCchHHHHHHHHHHHHHHcCCCCCCCCEEEEeCCCHHHHHHHHH
Confidence 46788899999999999999988899999999999999999999999999999999988887779999999999999999
Q ss_pred HHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHH
Q 019047 175 AAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEI 254 (347)
Q Consensus 175 a~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei 254 (347)
|+.+|++|+||||++++..|+.+++.+||+|+.++.+.+++++.+.+.+++++.++.+|+++|+|+.++..||.|+++||
T Consensus 86 a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~i~~~~n~~~~~~g~~t~~~Ei 165 (322)
T 1z7w_A 86 AAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEI 165 (322)
T ss_dssp HHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHCTTEEECCTTTCTHHHHHHHHTHHHHH
T ss_pred HHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHhCCCeEeCCCCCChhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998654578899999999998778999999999999867999999999
Q ss_pred HHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccccC----------CCCCCCchhccccccCeEEE
Q 019047 255 WEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG----------ENAGYVPSILDVQLLDEVIK 324 (347)
Q Consensus 255 ~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~g----------~~~~~~p~~l~~~~vd~~v~ 324 (347)
++|+++.+|+||+|+|+||+++|++.++|+.+++++||+|||.+++.+.+ ...+..|+.+.++.+|+++.
T Consensus 166 ~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~p~~~vigve~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~ 245 (322)
T 1z7w_A 166 WKGTGGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDEVVQ 245 (322)
T ss_dssp HHHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEEGGGCGGGTCCCCCCSCTTSCCSSCCTTCCGGGCSEEEE
T ss_pred HHHhcCCCCEEEEecCccHhHHHHHHHHHHcCCCCEEEEEecCCCccccCCCCCCcccCcCcCCCCChhhhHHhCCEEEE
Confidence 99997789999999999999999999999999999999999998765532 22345677788889999999
Q ss_pred eCHHHHHHHHHHHHHhcCccccC
Q 019047 325 VTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 325 Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
|+|+|+++++++|++++||++||
T Consensus 246 V~d~e~~~a~~~l~~~~gi~~~p 268 (322)
T 1z7w_A 246 VSSDESIDMARQLALKEGLLVGI 268 (322)
T ss_dssp ECHHHHHHHHHHHHHHHSCCBCH
T ss_pred ECHHHHHHHHHHHHHHcCceEch
Confidence 99999999999999999999986
|
| >3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-53 Score=407.45 Aligned_cols=252 Identities=37% Similarity=0.597 Sum_probs=232.7
Q ss_pred hhhhhhhccCCCceeeccccccC-------CCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCh
Q 019047 94 IAEDVTQLIGRTPMVYLNKVTEG-------CVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGN 166 (347)
Q Consensus 94 ~~~~v~~~~~~TPLv~~~~l~~~-------~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN 166 (347)
.++++...+++|||+++++|++. .|++||+|+|++|||||||+|++.+++..++++|.++++. +||++|+||
T Consensus 5 ~~~~i~~~ig~TPL~~~~~l~~~~~~~~~~~g~~v~~K~E~~~ptGSfK~R~a~~~l~~a~~~g~l~~~~-~vv~aSsGN 83 (325)
T 3dwg_A 5 RYDSLLQALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEADGLLRPGA-TILEPTSGN 83 (325)
T ss_dssp EESSTGGGCSCCCEEECTTTSSBSSCBTTBCCEEEEEEETTSSTTSBTTHHHHHHHHHHHHHTTCCCTTC-EEEEECSSH
T ss_pred cccCHHHhcCCCCcEEccccchhhcccccCCCcEEEEEECCCCCCCChHHHHHHHHHHHHHHcCCCCCCC-EEEEeCCcH
Confidence 34678889999999999999987 7789999999999999999999999999999999888774 589999999
Q ss_pred hHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHH
Q 019047 167 TGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIH 246 (347)
Q Consensus 167 ~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g 246 (347)
||+|+|++|+.+|++|+||||++++..|+.+++.+||+|+.++.+.+++++++.+.+++++.++++|+++|+|+.+++.|
T Consensus 84 ~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~np~~~~~g 163 (325)
T 3dwg_A 84 TGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEGGSNTAVATAKELAATNPSWVMLYQYGNPANTDSH 163 (325)
T ss_dssp HHHHHHHHHHHHTCEEEEEEESSSCHHHHHHHHHHTCEEEEECSTTTHHHHHHHHHHHHHHCTTSBCCCTTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999997667899999999999988679999999999998679
Q ss_pred HHHHHHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccccC---CCCCCCchhccccccCeEE
Q 019047 247 FDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG---ENAGYVPSILDVQLLDEVI 323 (347)
Q Consensus 247 ~~ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~g---~~~~~~p~~l~~~~vd~~v 323 (347)
|.|++.||++|+++ +|+||+|+|+||+++|++.++|+.+++++||||||.+++.+.+ ...+..|+.+.++.+|+++
T Consensus 164 ~~t~~~Ei~~q~~~-~d~vv~pvG~GG~~aGi~~~~k~~~p~~~vigVe~~~~~~~~~~~~i~~~~~~~~~~~~~~d~~~ 242 (325)
T 3dwg_A 164 YCGTGPELLADLPE-ITHFVAGLGTTGTLMGTGRFLREHVANVKIVAAEPRYGEGVYALRNMDEGFVPELYDPEILTARY 242 (325)
T ss_dssp HHTHHHHHHHHCTT-CCEEEEECSSSHHHHHHHHHHHHHSTTCEEEEEEEECCGGGGCCSSGGGCCCCTTCCGGGCSEEE
T ss_pred HHHHHHHHHHhcCC-CCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEeeCCCcchhccCcccCCcCcccccHhhCCeEE
Confidence 99999999999965 9999999999999999999999999999999999999876543 3345678888889999999
Q ss_pred EeCHHHHHHHHHHHHHhcCccccC
Q 019047 324 KVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 324 ~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.|+|+|++++++.|+++|||++||
T Consensus 243 ~V~d~e~~~a~~~l~~~egi~~ep 266 (325)
T 3dwg_A 243 SVGAVDAVRRTRELVHTEGIFAGI 266 (325)
T ss_dssp EEEHHHHHHHHHHHHHHHCCCBCH
T ss_pred EECHHHHHHHHHHHHHHcCceech
Confidence 999999999999999999999987
|
| >2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-52 Score=399.42 Aligned_cols=250 Identities=42% Similarity=0.702 Sum_probs=229.0
Q ss_pred hhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHH
Q 019047 96 EDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVA 175 (347)
Q Consensus 96 ~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa 175 (347)
+++...+++|||+++++|++.+|++||+|+|++|||||||||++.+++.+++++|.++++ .+|+++|+||||+|+|++|
T Consensus 2 ~~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGSfK~R~a~~~i~~a~~~g~~~~g-~~vv~~ssGN~g~a~A~~a 80 (303)
T 2v03_A 2 STLEQTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPG-DVLIEATSGNTGIALAMIA 80 (303)
T ss_dssp CSGGGGSSCCCEEECSSSSCSSSCEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTCCCTT-CEEEEECSSHHHHHHHHHH
T ss_pred cchHhhcCCCCcEECcccccccCCEEEEEeccCCCCCCcHHHHHHHHHHHHHHcCCCCCC-CEEEEECCcHHHHHHHHHH
Confidence 357788999999999999998899999999999999999999999999999999987776 4699999999999999999
Q ss_pred HHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHHH
Q 019047 176 AVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIW 255 (347)
Q Consensus 176 ~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei~ 255 (347)
+.+|++|+||||++++..|+.+++.+||+|+.++.+.+++++.+.+.+++++.+++ |+++|+|+.+++.||.|+++||+
T Consensus 81 ~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~n~~~~~~g~~t~~~Ei~ 159 (303)
T 2v03_A 81 ALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLALEMANRGEGK-LLDQFNNPDNPYAHYTTTGPEIW 159 (303)
T ss_dssp HHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHHHHTTSCE-ECCTTTCTHHHHHHHHTHHHHHH
T ss_pred HHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCc-ccCCcCChhhHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999997556889999999999885577 89999999988779999999999
Q ss_pred HhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCcccc---CCCCCCCchhccccccCeEEEeCHHHHHH
Q 019047 256 EDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVIS---GENAGYVPSILDVQLLDEVIKVTNDEAVN 332 (347)
Q Consensus 256 ~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~---g~~~~~~p~~l~~~~vd~~v~Vsd~ea~~ 332 (347)
+|+++.+|+||+|+|+||+++|++.++|+.+++++||+|||.+++.+. |...+..|+.+.++.+|+++.|+|+|+++
T Consensus 160 ~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~p~~~vigve~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~V~d~e~~~ 239 (303)
T 2v03_A 160 QQTGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQPEEGSSIPGIRRWPTEYLPGIFNASLVDEVLDIHQRDAEN 239 (303)
T ss_dssp HHTTTCCCEEEEECSSSHHHHHHHHHHHTSSSCCEEEEEEECTTCCCTTCCCCCGGGCCTTCCGGGCSEEEEECHHHHHH
T ss_pred HHhCCCCCEEEEEeCccHhHHHHHHHHHHhCCCCEEEEEcCCCCcccccCCcCCCCCCCcccchHHCCEEEEECHHHHHH
Confidence 999767999999999999999999999999999999999999886543 34445667777788899999999999999
Q ss_pred HHHHHHHhcCccccC
Q 019047 333 MARRLALEEGLLVMC 347 (347)
Q Consensus 333 a~~~La~~eGI~~G~ 347 (347)
++++|++++||++||
T Consensus 240 a~~~l~~~~gi~~~p 254 (303)
T 2v03_A 240 TMRELAVREGIFCGV 254 (303)
T ss_dssp HHHHHHHHHCCCBCH
T ss_pred HHHHHHHHcCceEcH
Confidence 999999999999987
|
| >2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-52 Score=398.75 Aligned_cols=252 Identities=52% Similarity=0.839 Sum_probs=229.6
Q ss_pred hhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHH
Q 019047 95 AEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFV 174 (347)
Q Consensus 95 ~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~a 174 (347)
++++...+++|||+++++|++..|++||+|+|++|||||||+|++.+++.++.++|.++++. +|+++|+||||+|+|++
T Consensus 7 ~~~i~~~~~~TPL~~~~~l~~~~g~~i~~K~E~~~ptgSfK~R~a~~~l~~a~~~g~~~~g~-~vv~assGN~g~alA~~ 85 (313)
T 2q3b_A 7 AEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGLIKPDT-IILEPTSGNTGIALAMV 85 (313)
T ss_dssp CSSGGGGSCCCCEEECSSSCTTCCSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTCCCTTC-EEEEECSSHHHHHHHHH
T ss_pred hhhHHHhcCCCceEECcccccccCcEEEEEehhcCCCCcHHHHHHHHHHHHHHHcCCCCCCC-EEEEeCCCHHHHHHHHH
Confidence 46788999999999999999888899999999999999999999999999999999877764 58999999999999999
Q ss_pred HHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHH
Q 019047 175 AAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEI 254 (347)
Q Consensus 175 a~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei 254 (347)
|+.+|++|+||||++++..|+.+++.+||+|+.++.+.+++++.+.+.+++++.+..+++++|+|+.++..||.|+++||
T Consensus 86 a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~n~~~~~~~~~t~~~Ei 165 (313)
T 2q3b_A 86 CAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGADGMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEV 165 (313)
T ss_dssp HHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHCTTEECCCTTTCTHHHHHHHHTHHHHH
T ss_pred HHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHHHHHhCCCEEeCCCCCChhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998754578899999999998755588999999999876799999999
Q ss_pred HHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccccC----------CCCCCCchhccccccCeEEE
Q 019047 255 WEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG----------ENAGYVPSILDVQLLDEVIK 324 (347)
Q Consensus 255 ~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~g----------~~~~~~p~~l~~~~vd~~v~ 324 (347)
++|+++++|+||+|+|+||+++|++.++|+.+++++||+|||.+++.+.. ...+..|+.+.+..+|+++.
T Consensus 166 ~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~vi~ve~~~~~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~d~~~~ 245 (313)
T 2q3b_A 166 WRDTDGKVDIVVAGVGTGGTITGVAQVIKERKPSARFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPPVLDQDLVDEIIT 245 (313)
T ss_dssp HHHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEETTSCTTTTCCCCCCCCTTSCCSSCCTTCCGGGCCEEEE
T ss_pred HHHcCCCCCEEEEccCcchhHHHHHHHHHHhCCCCEEEEEeeCCCccccCCCCCCcccCCcCCCCCChhhhHhhccEEEE
Confidence 99997689999999999999999999999999999999999998865422 23345677777888999999
Q ss_pred eCHHHHHHHHHHHHHhcCccccC
Q 019047 325 VTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 325 Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
|+|+|+++++++|++++||++||
T Consensus 246 v~d~e~~~a~~~l~~~~gi~~ep 268 (313)
T 2q3b_A 246 VGNEDALNVARRLAREEGLLVGI 268 (313)
T ss_dssp ECHHHHHHHHHHHHHHHSCCBCH
T ss_pred ECHHHHHHHHHHHHHHcCceEch
Confidence 99999999999999999999987
|
| >1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-52 Score=400.04 Aligned_cols=250 Identities=48% Similarity=0.761 Sum_probs=226.8
Q ss_pred hhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHH
Q 019047 95 AEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFV 174 (347)
Q Consensus 95 ~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~a 174 (347)
.+++...+++|||+++++| + .|++||+|+|++|||||||||++.+++.++.++|.++++ .+|+++|+||||+|+|++
T Consensus 4 ~~~i~~~~~~TPL~~l~~l-~-~g~~i~~K~E~~~ptGSfK~R~a~~~i~~a~~~g~~~~~-~~vv~~ssGN~g~a~A~~ 80 (316)
T 1y7l_A 4 YADNSYSIGNTPLVRLKHF-G-HNGNVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTLTKG-KEIVDATSGNTGIALAYV 80 (316)
T ss_dssp CSSGGGGCCCCCEEECSSS-S-STTCEEEEETTSSGGGBTHHHHHHHHHHHHHHTTSSCTT-CEEEESCCSHHHHHHHHH
T ss_pred hhhhHHhcCCCCcEECccC-C-CCCEEEEEeccCCCCCChHHHHHHHHHHHHHHcCCCCCC-CEEEEeCCcHHHHHHHHH
Confidence 4568889999999999999 7 789999999999999999999999999999999987776 469999999999999999
Q ss_pred HHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCc-eecCCCCChHHHHHHHHHHHHH
Q 019047 175 AAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNA-YMFQQFDNMANLKIHFDSTGPE 253 (347)
Q Consensus 175 a~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~-~~~~~~~n~~~~~~g~~ti~~E 253 (347)
|+.+|++|+||||++++..|+.+|+.+||+|+.++.+.+++++.+.+.+++++.++. +++++|+|+.+++.||.|+++|
T Consensus 81 a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~E 160 (316)
T 1y7l_A 81 AAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKGMKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPE 160 (316)
T ss_dssp HHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHCTTTEECCCTTTCTHHHHHHHHTHHHH
T ss_pred HHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999986545788999999999887667 8899999999987789999999
Q ss_pred HHHhhCCCCCEEEEecCcchHHHHHHHHHHhcC-CCCeEEEEcCCCCcccc----------------CCCCCCCchhccc
Q 019047 254 IWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMN-KEIKVVGVEPAERSVIS----------------GENAGYVPSILDV 316 (347)
Q Consensus 254 i~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~-~~~~vigVep~~~~~~~----------------g~~~~~~p~~l~~ 316 (347)
|++|+++++|+||+|+|+||+++|++.++|+.+ ++++||+|||.+++.+. |...+..|+.+.+
T Consensus 161 i~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~~vi~ve~~~~~~~~~~~~g~~~~~~~~~~~gi~~~~~~~~~~~ 240 (316)
T 1y7l_A 161 IWKDTDGKVDVVVAGVGTGGSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAGEEVKPGPHKIQGIGAGFIPKNLDL 240 (316)
T ss_dssp HHHHTTTCEEEEEEECSSSHHHHHHHHHHHHTSCCCCEEEEEEETTSCHHHHHHHTCCCCCCCCSCTTSCCSSCCTTCCG
T ss_pred HHHHcCCCCCEEEEeCCccccHHHHHHHHHHhCCCCCEEEEEecCCCccccccccCCccCCCCcccCcCCCCCCCchhhH
Confidence 999997679999999999999999999999998 99999999999874432 1223456777888
Q ss_pred cccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 317 QLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 317 ~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
+.+|+++.|+|+|+++++++|++++||++||
T Consensus 241 ~~~d~~~~V~d~e~~~a~~~l~~~~gi~~ep 271 (316)
T 1y7l_A 241 SIIDRVETVDSDTALATARRLMAEEGILAGI 271 (316)
T ss_dssp GGCCEEEEECHHHHHHHHHHHHHHHCCCBCH
T ss_pred hhCCEEEEECHHHHHHHHHHHHHhhCCeEcH
Confidence 8899999999999999999999999999987
|
| >2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-52 Score=402.91 Aligned_cols=253 Identities=38% Similarity=0.686 Sum_probs=229.8
Q ss_pred chhhhhhhccCCCceeecccccc----CCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhH
Q 019047 93 NIAEDVTQLIGRTPMVYLNKVTE----GCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTG 168 (347)
Q Consensus 93 ~~~~~v~~~~~~TPLv~~~~l~~----~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g 168 (347)
...+++...+++|||+++++|++ .+|++||+|+|++|||||||||++.+++..+.++|.++++. +|+++|+||||
T Consensus 12 ~~~~~i~~~~g~TPL~~~~~l~~~~~~~~g~~v~~K~E~~~ptGSfKdR~a~~~l~~a~~~g~~~~g~-~vv~aSsGN~g 90 (343)
T 2pqm_A 12 RIYHNILETIGGTPLVELHGVTEHPRIKKGTRILVKLEYFNPMSSVKDRVGFNIVYQAIKDGRLKPGM-EIIESTSGNTG 90 (343)
T ss_dssp CEESSGGGGSSCCCEEECCGGGCSTTSCTTCEEEEEEGGGSTTSBTHHHHHHHHHHHHHHHTSSCTTC-EEEEECSSHHH
T ss_pred hHHHHHHhhcCCCCeEECCccccccccccCcEEEEEeccCCCCCChHHHHHHHHHHHHHHcCCCCCCC-EEEEECCcHHH
Confidence 34577889999999999999998 78899999999999999999999999999999999877764 69999999999
Q ss_pred HHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCc-eecCCCCChHHHHHHH
Q 019047 169 LGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNA-YMFQQFDNMANLKIHF 247 (347)
Q Consensus 169 ~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~-~~~~~~~n~~~~~~g~ 247 (347)
+|+|++|+.+|++|+||||++++..|+.+|+.+||+|+.++.+.+++++.+.+.+++++.++. +++++|+|+.+++.||
T Consensus 91 ~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~a~~~~~~~~~~y~~~~~~~n~~n~~~g~ 170 (343)
T 2pqm_A 91 IALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTEGKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHH 170 (343)
T ss_dssp HHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHSTTTEEECCTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCcEEECCCCCChhHHHHHH
Confidence 999999999999999999999999999999999999999986545788999999999887666 7789999999887799
Q ss_pred HHHHHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCcccc----------CCCCCCCchhcccc
Q 019047 248 DSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVIS----------GENAGYVPSILDVQ 317 (347)
Q Consensus 248 ~ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~----------g~~~~~~p~~l~~~ 317 (347)
.|++ ||++|+++.+|+||+|+|+||+++|++.++|+.+++++||||||.+++.+. |...+..|+.+.+.
T Consensus 171 ~t~~-Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~p~~~vigVe~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~ 249 (343)
T 2pqm_A 171 YTAN-EIWEDTDGEVDIVVSAVGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKGPHGIQGIGAGFIPDIYKKE 249 (343)
T ss_dssp HHHH-HHHHHTTTCEEEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEEGGGCTTTTCCCCCCCCTTCCCSSCCTTCCGG
T ss_pred HHHH-HHHHHcCCCCCEEEEecCCchhHHHHHHHHHHcCCCCEEEEEecCCCcccccCCCCCeecCccCCCCCCHHHHHH
Confidence 9999 999999768999999999999999999999999999999999999875443 23345567888888
Q ss_pred ccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 318 LLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 318 ~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.+|+++.|+|+|+.+++++|+++|||++||
T Consensus 250 ~~d~~~~Vsd~e~~~a~~~l~~~~gi~~ep 279 (343)
T 2pqm_A 250 FVDEIIPIKTQDAWKMARAVVKYDGIMCGM 279 (343)
T ss_dssp GCCEEEEECHHHHHHHHHHHHHHHCCCBCH
T ss_pred hCCeEEEECHHHHHHHHHHHHHHhCCeEch
Confidence 999999999999999999999999999987
|
| >1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-52 Score=393.73 Aligned_cols=249 Identities=49% Similarity=0.787 Sum_probs=225.6
Q ss_pred hhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCC-eEEEEeCCChhHHHHHHHHH
Q 019047 98 VTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGK-TVLVEPTTGNTGLGIAFVAA 176 (347)
Q Consensus 98 v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~-~~vv~assGN~g~AlA~aa~ 176 (347)
+...+++|||+++++|++.+|++||+|+|++|||||||+|++.+++.++.++|.+++++ .+|+++|+||||+|+|++|+
T Consensus 3 i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGSfK~R~a~~~l~~a~~~g~~~~g~~~~vv~assGN~g~a~A~~a~ 82 (304)
T 1ve1_A 3 VEGAIGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSGQVIVEPTSGNTGIGLAMIAA 82 (304)
T ss_dssp GGGGCCCCCEEECCSSSCTTSCEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTSCCTTSCCEEEESCCSHHHHHHHHHHH
T ss_pred hHHhcCCCCcEECcccccccCCEEEEEecccCCCCcHHHHHHHHHHHHHHHcCCCCCCCccEEEEeCCcHHHHHHHHHHH
Confidence 56778999999999999988899999999999999999999999999999999877763 16899999999999999999
Q ss_pred HcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHHHH
Q 019047 177 VKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWE 256 (347)
Q Consensus 177 ~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei~~ 256 (347)
.+|++|+||||++++..|+.+++.+||+|+.++.+.+++++.+.+.+++++ ++++++++|+|+.++..||.|+++||++
T Consensus 83 ~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~l~~~-~~~~~~~~~~n~~~~~g~~~t~~~Ei~~ 161 (304)
T 1ve1_A 83 SRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRMLAAREEALRLKEE-LGAFMPDQFKNPANVRAHYETTGPELYE 161 (304)
T ss_dssp HHTCEEEEEEETTCCHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHHHHH-HTCBCCCTTTCHHHHHHHHHTHHHHHHH
T ss_pred HcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHhc-CCCEeCCCCCChhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999754578899999999887 5788899999999986458999999999
Q ss_pred hhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccccC----------CCCCCCchhccccccCeEEEeC
Q 019047 257 DTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG----------ENAGYVPSILDVQLLDEVIKVT 326 (347)
Q Consensus 257 ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~g----------~~~~~~p~~l~~~~vd~~v~Vs 326 (347)
|+.+.+|+||+|+|+||+++|++.++|+.+++++||+|||.+++.+.+ ...+..|+.+.++.+|+++.|+
T Consensus 162 q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~vi~ve~~~~~~~~~g~~~~~~~~gl~~~~~~~~~~~~~~d~~~~V~ 241 (304)
T 1ve1_A 162 ALEGRIDAFVYGSGTGGTITGVGRYLKERIPHVKVIAVEPARSNVLSGGKMGQHGFQGMGPGFIPENLDLSLLDGVIQVW 241 (304)
T ss_dssp HTTTCCSEEEEECSSSHHHHHHHHHHHTTCTTCEEEEEEEGGGCTTTTCCCCCCSCTTSCCSSCCTTCCGGGCSEEEEEC
T ss_pred HcCCCCCEEEEecCCchhHHHHHHHHHHhCCCCEEEEEecCCCccccCCCCCCcccCCCCCCCCChhhhhhhCCEEEEEC
Confidence 997679999999999999999999999999999999999998754432 2234567778888899999999
Q ss_pred HHHHHHHHHHHHHhcCccccC
Q 019047 327 NDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 327 d~ea~~a~~~La~~eGI~~G~ 347 (347)
|+|+.+++++|+++|||++||
T Consensus 242 d~e~~~a~~~l~~~~gi~~ep 262 (304)
T 1ve1_A 242 EEDAFPLARRLAREEGLFLGM 262 (304)
T ss_dssp HHHHHHHHHHHHHHHCCCBCH
T ss_pred HHHHHHHHHHHHHHhCcEEcH
Confidence 999999999999999999987
|
| >2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-52 Score=396.71 Aligned_cols=251 Identities=51% Similarity=0.767 Sum_probs=208.8
Q ss_pred hhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHH
Q 019047 95 AEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFV 174 (347)
Q Consensus 95 ~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~a 174 (347)
++++...+++|||+++++|++.+|++||+|+|++|||||||+|++.+++.++.++|.++++ .+|+++|+||||+|+|++
T Consensus 5 ~~~i~~~~~~TPL~~l~~l~~~~g~~i~~K~E~~~ptgSfK~R~a~~~l~~a~~~g~~~~g-~~vv~assGN~g~a~A~~ 83 (308)
T 2egu_A 5 VNSITELIGDTPAVKLNRIVDEDSADVYLKLEFMNPGSSVKDRIALAMIEAAEKAGKLKPG-DTIVEPTSGNTGIGLAMV 83 (308)
T ss_dssp CSCGGGGSSCCCEEECCSSSCTTSCEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTCCCTT-CEEEEECCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCeEECCcccccCCCEEEEEecccCCCCChHHHHHHHHHHHHHHcCCCCCC-CEEEEeCCCHHHHHHHHH
Confidence 4668889999999999999988899999999999999999999999999999999987776 458999999999999999
Q ss_pred HHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHH
Q 019047 175 AAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEI 254 (347)
Q Consensus 175 a~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei 254 (347)
|+.+|++|+||||++++..|+.+++.+||+|+.++.+.+++++.+.+.+++++.+ .+++++|+|+.++..||.|+++||
T Consensus 84 a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~l~~~~~-~~~~~~~~n~~~~~~g~~t~~~Ei 162 (308)
T 2egu_A 84 AAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGAQGMRGAIAKAEELVREHG-YFMPQQFKNEANPEIHRLTTGKEI 162 (308)
T ss_dssp HHHHTCEEEEEEESCSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHHC-CBCC--------------CHHHHH
T ss_pred HHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHHCc-CCcCCcCCChhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999865457889999999998874 478899999998767999999999
Q ss_pred HHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccccC----------CCCCCCchhccccccCeEEE
Q 019047 255 WEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG----------ENAGYVPSILDVQLLDEVIK 324 (347)
Q Consensus 255 ~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~g----------~~~~~~p~~l~~~~vd~~v~ 324 (347)
++|+++.+|+||+|+|+||+++|++.++|+.+++++||+|||.+++.+.+ ...+..|+.+.+..+|+++.
T Consensus 163 ~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~~ 242 (308)
T 2egu_A 163 VEQMGDQLDAFVAGVGTGGTITGAGKVLREAYPNIKIYAVEPADSPVLSGGKPGPHKIQGIGAGFVPDILDTSIYDGVIT 242 (308)
T ss_dssp HHHHTTCCCEEEEEGGGTHHHHHHHHHHHHHCTTCEEEEEEECC-----------------------CCCCCCSCSEEEE
T ss_pred HHHcCCCCCEEEEeeCCchhHHHHHHHHHHhCCCCEEEEEEeCCCccccCCCCCCcccCccCCCCCCHhHHHHhcCeEEE
Confidence 99997679999999999999999999999999999999999998854432 22344567777788999999
Q ss_pred eCHHHHHHHHHHHHHhcCccccC
Q 019047 325 VTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 325 Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
|+|+|+++++++|+++|||++||
T Consensus 243 v~d~e~~~a~~~l~~~~gi~~ep 265 (308)
T 2egu_A 243 VTTEEAFAAARRAAREEGILGGI 265 (308)
T ss_dssp ECHHHHHHHHHHHHHHHCCCBCH
T ss_pred ECHHHHHHHHHHHHHHhCceEcH
Confidence 99999999999999999999987
|
| >1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-50 Score=385.58 Aligned_cols=244 Identities=48% Similarity=0.714 Sum_probs=220.2
Q ss_pred hhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHH
Q 019047 96 EDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVA 175 (347)
Q Consensus 96 ~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa 175 (347)
+-+...+++|||+++++|+ ++||+|+|++|||||||||++.+++.+++++|.++++ |+++|+||||+|+|++|
T Consensus 12 ~~~~~~~~~TPL~~l~~l~----~~v~~K~E~~~ptGSfK~R~a~~~l~~a~~~g~~~~~---vv~aSsGN~g~a~A~aa 84 (303)
T 1o58_A 12 HMMERLIGSTPIVRLDSID----SRIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNG---IVEPTSGNMGIAIAMIG 84 (303)
T ss_dssp CHHHHHSCCCCEEECTTTC----TTEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTCCTTC---EEEECSSHHHHHHHHHH
T ss_pred hhhhhccCCCCeEECccCC----ceEEEEecCCCCCCChHHHHHHHHHHHHHHcCCCCCC---EEEECchHHHHHHHHHH
Confidence 4467889999999999886 5899999999999999999999999999998875543 89999999999999999
Q ss_pred HHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHHH
Q 019047 176 AVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIW 255 (347)
Q Consensus 176 ~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei~ 255 (347)
+.+|++|+||||++++..|+.+++.+||+|+.++++.+++++++.+.+++++. +.+++++|+|+.++..||.|+++||+
T Consensus 85 ~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~n~~~~~~g~~t~~~Ei~ 163 (303)
T 1o58_A 85 AKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMKGAVEKALEISRET-GAHMLNQFENPYNVYSHQFTTGPEIL 163 (303)
T ss_dssp HHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHH-CCBCCCTTTCHHHHHHHHHTHHHHHH
T ss_pred HHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhc-CeEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999986544789999999999886 68889999999998779999999999
Q ss_pred HhhCCCCCEEEEecCcchHHHHHHHHHHhcCCC-CeEEEEcCCCCccccC----------CCCCCCchhccccccCeEEE
Q 019047 256 EDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKE-IKVVGVEPAERSVISG----------ENAGYVPSILDVQLLDEVIK 324 (347)
Q Consensus 256 ~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~-~~vigVep~~~~~~~g----------~~~~~~p~~l~~~~vd~~v~ 324 (347)
+|+++.+|+||+|+|+||+++|++.++|+.+++ ++||+|||.+++.+.+ ...+..|+.+....+|+++.
T Consensus 164 ~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~p~~~~vigve~~~~~~~~~g~~~~~~~~gi~~~~~~~~~~~~~~d~~~~ 243 (303)
T 1o58_A 164 KQMDYQIDAFVAGVGTGGTISGVGRVLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGIGAGFVPKILDRSVIDEVIT 243 (303)
T ss_dssp HHTTTCCSEEEEECSSSHHHHHHHHHHHHHHGGGSEEEEEEETTSCTTTTCCCCCCCCTTSCCSSCCTTCCGGGCCEEEE
T ss_pred HHcCCCCCEEEEeeCCcccHHHHHHHHHHhCCCCCEEEEEecCCCccccCCCCCCeecCcCCCCCcCHHHHHHhCCeEEE
Confidence 999767999999999999999999999999888 9999999998854432 23345677777788999999
Q ss_pred eCHHHHHHHHHHHHHhcCccccC
Q 019047 325 VTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 325 Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
|+|+|+.+++++|++++||++||
T Consensus 244 V~d~e~~~a~~~l~~~~gi~~ep 266 (303)
T 1o58_A 244 VEDEEAYEMARYLAKKEGLLVGI 266 (303)
T ss_dssp ECHHHHHHHHHHHHHHHCCCBCH
T ss_pred ECHHHHHHHHHHHHHHcCceEcH
Confidence 99999999999999999999987
|
| >3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-50 Score=412.74 Aligned_cols=257 Identities=39% Similarity=0.602 Sum_probs=231.3
Q ss_pred CCCchhhhhhhccCCCceeeccccccCCC--CeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChh
Q 019047 90 HGVNIAEDVTQLIGRTPMVYLNKVTEGCV--GNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNT 167 (347)
Q Consensus 90 ~~~~~~~~v~~~~~~TPLv~~~~l~~~~g--~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~ 167 (347)
+...+.+.+...+++|||+++++|++.+| ++||+|+|++|||||||+|++.+++..++++|.+++|. +|+++|+|||
T Consensus 46 ~~~~~~~~i~~~ig~TPl~~l~~l~~~~g~~~~i~~K~E~~~ptGS~K~R~a~~~i~~a~~~g~~~~g~-~vv~~ssGN~ 124 (527)
T 3pc3_A 46 HRQQITPNILEVIGCTPLVKLNNIPASDGIECEMYAKCEFLNPGGSVKDRIGYRMVQDAEEQGLLKPGY-TIIEPTSGNT 124 (527)
T ss_dssp CCCSSCSSGGGGSSCCCEEECCSHHHHTTCCSEEEEEEGGGSTTSBTTHHHHHHHHHHHHHHTCCCTTC-EEEEECSSHH
T ss_pred chhhHHhhHHhhcCCCCcEEcchhhhhcCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHcCCCCCCC-EEEEeCCCHH
Confidence 34456677889999999999999998776 79999999999999999999999999999999988875 4899999999
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChH---HHHHHHHHHHHcCCCceecCCCCChHHHH
Q 019047 168 GLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLR---GALDKAEEIVLNTPNAYMFQQFDNMANLK 244 (347)
Q Consensus 168 g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~---~a~~~a~~~a~~~~~~~~~~~~~n~~~~~ 244 (347)
|+|+|++|+.+|++|+||||++++..|+.+++.+||+|+.++.+.+++ +++..|.+++++.++.+++++|+|+.++.
T Consensus 125 g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~n~~ 204 (527)
T 3pc3_A 125 GIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPTEAAYDSPEGLIYVAQQLQRETPNSIVLDQYRNAGNPL 204 (527)
T ss_dssp HHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECTTSCTTSTTSHHHHHHHHHHHSSSEECCCTTTCTHHHH
T ss_pred HHHHHHHHHHhCCeEEEEEcCCCCHHHHHHHHHCCCEEEEeCCCCCcccHHHHHHHHHHHHHhCCCcEecCCCCCcchHH
Confidence 999999999999999999999999999999999999999998643343 47888999999887889999999998777
Q ss_pred HHHHHHHHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccc---------------cCCCCCC
Q 019047 245 IHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVI---------------SGENAGY 309 (347)
Q Consensus 245 ~g~~ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~---------------~g~~~~~ 309 (347)
.||.|+|.||++|+++++|+||+|+|+||+++|++.++|+..|+++||||||.++... .|...++
T Consensus 205 ~g~~t~~~Ei~~q~~~~~d~vv~~vG~GG~~~G~~~~~k~~~p~~~vigve~~~~~~~~~~~~~~~~~~~~~~~gi~~~~ 284 (527)
T 3pc3_A 205 AHYDGTAAEILWQLDNKVDMIVVSAGTAGTISGIGRKIKEQVPSCQIVGVDPYGSILARPAELNKTDVQFYEVEGIGYDF 284 (527)
T ss_dssp HHHHTHHHHHHHHTTTCCSEEEEECSSSHHHHHHHHHHHHHCTTSEEEEEEETTCCCSSSGGGGCCSCCCCSCCSCCCSS
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEecCCcccccchhhcCCCCCceeccccCCCC
Confidence 8999999999999977899999999999999999999999999999999999987542 1223455
Q ss_pred CchhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 310 VPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 310 ~p~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.|+.+.++.+|+++.|+|+|+++++++|++.|||++||
T Consensus 285 ~p~~~~~~~~d~~~~V~d~e~~~a~r~l~~~eGi~~~p 322 (527)
T 3pc3_A 285 PPTVFDDTVVDVWTKIGDSDCFPMSRRLNAEEGLLCGG 322 (527)
T ss_dssp CCTTCCGGGCCEEEEECGGGTHHHHHHHHHHHCCCBCH
T ss_pred CCcccchhhCcEEEEECHHHHHHHHHHHHHHcCceEcH
Confidence 67778888999999999999999999999999999986
|
| >1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-50 Score=399.57 Aligned_cols=254 Identities=38% Similarity=0.609 Sum_probs=222.7
Q ss_pred chhhhhhhccCCCceeeccccccCCC--CeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHH
Q 019047 93 NIAEDVTQLIGRTPMVYLNKVTEGCV--GNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLG 170 (347)
Q Consensus 93 ~~~~~v~~~~~~TPLv~~~~l~~~~g--~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~A 170 (347)
..++++...+++|||+++++|++.+| ++||+|+|++|||||||||++.+++.+++++|.++++. +||++|+||||+|
T Consensus 97 ~~~~~i~~~ig~TPLv~l~~Ls~~~G~~~~v~lK~E~~nptGSfKdR~a~~~i~~a~~~G~l~~g~-tVV~aSsGN~G~A 175 (435)
T 1jbq_A 97 KILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKPGD-TIIEPTSGNTGIG 175 (435)
T ss_dssp SEESSGGGGSSCCCEEECCSHHHHTTCCSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHHTCSCTTC-EEEEECSSHHHHH
T ss_pred hHHHHHHhhCCCCCeEECcchhhHhCCCceEEEEECCCCCcCCHHHHHHHHHHHHHHHcCCCCCCC-EEEEeCCCHHHHH
Confidence 34567888999999999999998777 69999999999999999999999999999999888875 5899999999999
Q ss_pred HHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHH---HHHHHHHHHHcCCCceecCCCCChHHHHHHH
Q 019047 171 IAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRG---ALDKAEEIVLNTPNAYMFQQFDNMANLKIHF 247 (347)
Q Consensus 171 lA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~---a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~ 247 (347)
+|++|+.+|++|+||||++++..|+.+|+.+||+|+.++.+.++++ .++.+.+++++.++.++++||+|+.++..||
T Consensus 176 lA~aaa~~Gi~~~IvmP~~~s~~k~~~l~~~GAeVv~v~~~~~~d~~~~~~~~a~~la~~~~~~~~i~q~~n~~n~~ag~ 255 (435)
T 1jbq_A 176 LALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHY 255 (435)
T ss_dssp HHHHHHHHTCEEEEEECSCCCHHHHHHHHHTTCEEEECCC-------CCHHHHHHHHHHHSTTEECCCTTTCTHHHHHHH
T ss_pred HHHHHHHcCCeEEEEeCCCCCHHHHHHHHhCCCEEEEecCCCCcchHHHHHHHHHHHHHhcCCeEEeCccCCcccHHHHH
Confidence 9999999999999999999999999999999999999986433443 4678888888877888999999998877899
Q ss_pred HHHHHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCcccc---------------CCCCCCCch
Q 019047 248 DSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVIS---------------GENAGYVPS 312 (347)
Q Consensus 248 ~ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~---------------g~~~~~~p~ 312 (347)
.|+++||++|+++++|+||+|+|+||+++|++.++|+..++++||||||.++.... |...++.|.
T Consensus 256 ~t~a~EI~eQl~~~~D~vVvpvGtGGtlaGi~~~lk~~~p~vrVigVep~gs~~~~~~~l~~~~~~~~~~~gig~~~~~~ 335 (435)
T 1jbq_A 256 DTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTTYEVEGIGYDFIPT 335 (435)
T ss_dssp HTHHHHHHHHHTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEETTCSCSSSGGGGCCSCCCCSCCSCCCSSCCT
T ss_pred HHHHHHHHHHcCCCCCEEEEecCCcHhHHHHHHHHHHhCCCCEEEEEecCCchhhchhhhhcCCCcceeecccccCccch
Confidence 99999999999778999999999999999999999999999999999999875421 112234455
Q ss_pred hccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 313 ILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 313 ~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.+.+..+|+++.|+|+|+++++++|+++|||++||
T Consensus 336 ~l~~~~vd~~~~Vsd~ea~~a~r~La~~eGilve~ 370 (435)
T 1jbq_A 336 VLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGG 370 (435)
T ss_dssp TCCGGGCCEEEEECHHHHHHHHHHHHHHSCCCBCH
T ss_pred hhhhhhccceEEeCHHHHHHHHHHHHHHcCCEEcH
Confidence 56677899999999999999999999999999985
|
| >3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-50 Score=389.04 Aligned_cols=247 Identities=19% Similarity=0.274 Sum_probs=215.9
Q ss_pred hhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHH
Q 019047 95 AEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFV 174 (347)
Q Consensus 95 ~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~a 174 (347)
.+++...+++|||+++++|++.+|++||+|+|++|||||||+|++.+++..+.+.|...+. +.|+++|+||||+|+|++
T Consensus 16 ~~~i~~~i~~TPL~~~~~l~~~~g~~i~~K~E~~~ptGSfK~Rga~~~i~~a~~~g~~~~~-~~vv~~SsGNhg~a~A~a 94 (346)
T 3l6b_A 16 HINIRDSIHLTPVLTSSILNQLTGRNLFFKCELFQKTGSFKIRGALNAVRSLVPDALERKP-KAVVTHSSGNHGQALTYA 94 (346)
T ss_dssp HHHHGGGSCCCCEECCHHHHHHHTSEEEEEEGGGSGGGBTHHHHHHHHHHTTC-----CCC-SCEEEECSSHHHHHHHHH
T ss_pred HHHHhcccCCCCeEEchhhHHHhCCeEEEEeCCCCCCCCcHHHHHHHHHHHHHHhccccCC-CEEEEeCCCHHHHHHHHH
Confidence 3567788999999999999998889999999999999999999999999999887644333 349999999999999999
Q ss_pred HHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHH
Q 019047 175 AAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEI 254 (347)
Q Consensus 175 a~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei 254 (347)
|+.+|++|+||||++++..|+.+++.+||+|+.+++ +++++.+.+.+++++. +.+|+++|+|+.++ .||.|++.||
T Consensus 95 a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~v~~--~~~~~~~~a~~l~~~~-~~~~i~~~~np~~~-~g~~t~~~Ei 170 (346)
T 3l6b_A 95 AKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEP--SDESRENVAKRVTEET-EGIMVHPNQEPAVI-AGQGTIALEV 170 (346)
T ss_dssp HHHTTCCEEEEEETTSCHHHHHHHHHTTCEEEEECS--SHHHHHHHHHHHHHHH-TCEECCSSSCHHHH-HHHHHHHHHH
T ss_pred HHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEECCCCChHHH-HHHHHHHHHH
Confidence 999999999999999999999999999999999986 4688999999998886 68899999999886 6999999999
Q ss_pred HHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCc-----cccCC-----------------CCCCCch
Q 019047 255 WEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERS-----VISGE-----------------NAGYVPS 312 (347)
Q Consensus 255 ~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~-----~~~g~-----------------~~~~~p~ 312 (347)
++|+ +.+|+||+|+|+||+++|++.++|+.+++++||||||.+++ +..|. ..+...+
T Consensus 171 ~~q~-~~~d~vvv~vG~GG~~aGi~~~~k~~~p~~~vigVe~~~~~~~~~s~~~g~~~~~~~~~~tia~gl~~~~g~~~~ 249 (346)
T 3l6b_A 171 LNQV-PLVDALVVPVGGGGMLAGIAITVKALKPSVKVYAAEPSNADDCYQSKLKGKLMPNLYPPETIADGVKSSIGLNTW 249 (346)
T ss_dssp HHHS-TTCCEEEEECSSSHHHHHHHHHHHHHCTTSEEEEEEEGGGCHHHHHHHHTSCCCCSSCCCCSCGGGCSCCCTTHH
T ss_pred HHhC-CCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEecCCCHHHHHHHHcCCccccCCCCCchhhhccCCCcHHHH
Confidence 9999 57999999999999999999999999999999999998864 22221 0122334
Q ss_pred hccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 313 ILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 313 ~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.+.++.+|+++.|+|+|+.++++.|+++|||++||
T Consensus 250 ~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~ep 284 (346)
T 3l6b_A 250 PIIRDLVDDIFTVTEDEIKCATQLVWERMKLLIEP 284 (346)
T ss_dssp HHHHHHCCEEEEECHHHHHHHHHHHHHHHCCCCCH
T ss_pred HHHHHcCCeEEEECHHHHHHHHHHHHHHCCcEEcH
Confidence 55678899999999999999999999999999987
|
| >4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-50 Score=389.08 Aligned_cols=254 Identities=19% Similarity=0.180 Sum_probs=214.4
Q ss_pred HHHHHHHhccCCCCchhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeE
Q 019047 79 REIEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTV 158 (347)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~ 158 (347)
.++|+ |.+++|. ....+++|||+++++|++.+|++||+|+|++|||||||+|++.+++..+.++|. ++
T Consensus 28 ~~l~r-~~~~~~~------~~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGSfK~Rga~~~i~~a~~~g~-----~~ 95 (364)
T 4h27_A 28 QQMGR-GSEFMMS------GEPLHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQGC-----AH 95 (364)
T ss_dssp --------------------CCSSCCCCEEEEHHHHHHHTSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTC-----CE
T ss_pred cccch-hHHhhhh------cCCCCCcCCeEEChhhHHHhCCEEEEEeCCCCCCCCHHHHHHHHHHHHHHhcCC-----CE
Confidence 45555 6666553 346788999999999999889999999999999999999999999999999875 67
Q ss_pred EEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCC
Q 019047 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFD 238 (347)
Q Consensus 159 vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~ 238 (347)
||++|+||||+|+|++|+.+|++|+||||++++..|+++++.+||+|+.+++ +++++.+.+.+++++.++++|+++|+
T Consensus 96 vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~--~~~~a~~~a~~l~~~~~~~~~~~~~~ 173 (364)
T 4h27_A 96 FVCSSSGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATVKVVGE--LLDEAFELAKALAKNNPGWVYIPPFD 173 (364)
T ss_dssp EEECCSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHTTTCEEEEECS--STTHHHHHHHHHHHHSTTEEEECSSC
T ss_pred EEEeCCChHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhCCCeEEeCCCC
Confidence 9999999999999999999999999999999999999999999999999986 46889999999999877899999999
Q ss_pred ChHHHHHHHHHHHHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcC-CCCeEEEEcCCCCccc-----cCCC------
Q 019047 239 NMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMN-KEIKVVGVEPAERSVI-----SGEN------ 306 (347)
Q Consensus 239 n~~~~~~g~~ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~-~~~~vigVep~~~~~~-----~g~~------ 306 (347)
|+.++ .||.|++.||++|+++.+|+||+|+|+||+++|++.++|+.+ ++++||+|||.+++.+ .|..
T Consensus 174 np~~~-~G~~t~~~Ei~~q~~~~~D~vvvpvG~GG~~aGi~~~~k~~~~p~~~vigVe~~~~~~~~~~~~~g~~~~~~~~ 252 (364)
T 4h27_A 174 DPLIW-EGHASIVKELKETLWEKPGAIALSVGGGGLLCGVVQGLQEVGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKI 252 (364)
T ss_dssp SHHHH-HHHTHHHHHHHHHCSSCCSEEEEECSSSHHHHHHHHHHHHTTCTTCCEEEEEETTSCHHHHHHHHTSCCCCSCC
T ss_pred CHHHH-HHHHHHHHHHHHHhCCCCCEEEEcCCccHHHHHHHHHHHHhCCCCCeEEEEecCCChHHHHHHHCCCcccCCCC
Confidence 99987 599999999999997789999999999999999999999886 7899999999987543 2210
Q ss_pred --------CCCC---chhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 307 --------AGYV---PSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 307 --------~~~~---p~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.... .+.+.++..+..+.|+|+|+++++++|+++|||++||
T Consensus 253 ~tia~gl~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~ep 304 (364)
T 4h27_A 253 TSVAKALGVKTVGAQALKLFQEHPIFSEVISDQEAVAAIEKFVDDEKILVEP 304 (364)
T ss_dssp CCSCGGGCCSSCCHHHHHHHTTSCEEEEEECHHHHHHHHHHHHHHHCCCCCH
T ss_pred CcHHHHhCCCCCcHHHHHHHHhcCCEEEEECHHHHHHHHHHHHHHCCCeEcc
Confidence 1111 1233445667788999999999999999999999987
|
| >1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-49 Score=389.35 Aligned_cols=252 Identities=19% Similarity=0.169 Sum_probs=214.5
Q ss_pred HHHHHhccCCCCchhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEE
Q 019047 81 IEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLV 160 (347)
Q Consensus 81 ~~~~~~~~~~~~~~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv 160 (347)
+|+ |.+++|. +...+++|||+++++|++.+|++||+|+|++|||||||||++.+++.++.++|. ++||
T Consensus 30 ~~r-y~~~~p~------~~~~~~~TPL~~l~~l~~~~g~~i~~K~E~~~ptGSfKdRga~~~l~~a~~~g~-----~~vv 97 (372)
T 1p5j_A 30 MGR-GSEFMMS------GEPLHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQGC-----AHFV 97 (372)
T ss_dssp -----------------CCCSSCCCCEEEEHHHHHHHTSCEEEECGGGSGGGBTTHHHHHHHHHHHHHTTC-----CEEE
T ss_pred ccc-HHHhccc------ccCCCCCCCceEcHhhHHHhCCEEEEEEcCCCCCCChHHHHHHHHHHHHHHcCC-----CEEE
Confidence 665 7776664 345788999999999998888999999999999999999999999999998773 6799
Q ss_pred EeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCCh
Q 019047 161 EPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNM 240 (347)
Q Consensus 161 ~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~ 240 (347)
++|+||||+|+|++|+.+|++|+||||++++..|+.+|+.+||+|+.+++ +++++.+.+.+++++.++.+|+++|+|+
T Consensus 98 ~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~a~~~a~~l~~~~~~~~~v~~~~n~ 175 (372)
T 1p5j_A 98 CSSAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATCKVVGE--LLDEAFELAKALAKNNPGWVYIPPFDDP 175 (372)
T ss_dssp ECCSSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHTTCEEEECCS--CHHHHHHHHHHHHHHSTTEEECCSSCCH
T ss_pred EeCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhcCCcEEeCCCCCH
Confidence 99999999999999999999999999999999999999999999999986 5789999999999886689999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcC-CCCeEEEEcCCCCccc-----cCC---------
Q 019047 241 ANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMN-KEIKVVGVEPAERSVI-----SGE--------- 305 (347)
Q Consensus 241 ~~~~~g~~ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~-~~~~vigVep~~~~~~-----~g~--------- 305 (347)
.++ .||.|++.||++|+++.+|+||+|+|+||+++|++.++|+.+ ++++||||||.+++.+ .|.
T Consensus 176 ~~~-~G~~t~~~Ei~~ql~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~p~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~t 254 (372)
T 1p5j_A 176 LIW-EGHASIVKELKETLWEKPGAIALSVGGGGLLCGVVQGLQECGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKITS 254 (372)
T ss_dssp HHH-HHHTHHHHHHHHHCSSCCSEEEEECSSSHHHHHHHHHHHHTTCTTCCEEEEEETTSCHHHHHHHHTSCCCCSCCCC
T ss_pred HHH-hhHHHHHHHHHHHcCCCCCEEEEecCCchHHHHHHHHHHHhCCCCceEEEEecCCChHHHHHHHcCCceecCCCce
Confidence 998 599999999999997679999999999999999999999986 8899999999987533 221
Q ss_pred -----CCCCCc---hhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 306 -----NAGYVP---SILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 306 -----~~~~~p---~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
..+..+ +.+.+..+++++.|+|+|+++++++|+++|||++||
T Consensus 255 ia~gl~~~~~~~~~~~~~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~ep 304 (372)
T 1p5j_A 255 VAKALGVKTVGSQALKLFQEHPIFSEVISDQEAVAAIEKFVDDEKILVEP 304 (372)
T ss_dssp SCGGGCCSSCCHHHHHHHHHSCEEEEEECHHHHHHHHHHHHHHTCCCCCH
T ss_pred eecccCCCCCCHHHHHHHhhcCCEEEEECHHHHHHHHHHHHHHcCCeech
Confidence 111221 233455678899999999999999999999999987
|
| >2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-49 Score=384.32 Aligned_cols=258 Identities=21% Similarity=0.218 Sum_probs=224.7
Q ss_pred HHHHHHhccCCCCchhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEE
Q 019047 80 EIEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVL 159 (347)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~v 159 (347)
.+|+ |++++|..+..+++.+.+++|||+++++|++.+|++||+|+|++|||||||||++.+++.++.++|. .+|
T Consensus 15 ~~~r-y~~~lp~~~~~~~v~~~~g~TPL~~~~~l~~~~g~~i~~K~E~~~ptgSfKdR~a~~~l~~a~~~g~-----~~v 88 (360)
T 2d1f_A 15 VIAA-YRDRLPVGDDWTPVTLLEGGTPLIAATNLSKQTGCTIHLKVEGLNPTGSFKDRGMTMAVTDALAHGQ-----RAV 88 (360)
T ss_dssp HHHH-TGGGSCCCSSCCCCCCCCCCCCEEECHHHHHHHSSEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTC-----SEE
T ss_pred chhh-hHHhCCCcccCCccccccCCCCCeechhhHHHhCCeEEEEECCCCCCcCHHHHHHHHHHHHHHHCCC-----CEE
Confidence 4565 9999997544577999999999999999998888999999999999999999999999999998885 679
Q ss_pred EEeCCChhHHHHHHHHHHcCCcEEEEeCCC-CCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCC
Q 019047 160 VEPTTGNTGLGIAFVAAVKGYKLIVTMPAS-TNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFD 238 (347)
Q Consensus 160 v~assGN~g~AlA~aa~~~Gl~~~I~vp~~-~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~ 238 (347)
+++|+||||+|+|++|+.+|++|+||||++ ++..|+.+|+.+||+|+.+++ +++++.+.+.+++++.++.+++++ +
T Consensus 89 v~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~~k~~~~~~~GA~v~~v~~--~~~~~~~~a~~l~~~~~~~~~i~~-~ 165 (360)
T 2d1f_A 89 LCASTGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQIDG--NFDDCLELARKMAADFPTISLVNS-V 165 (360)
T ss_dssp EECCSSHHHHHHHHHHHHHTCEEEEEECSSCCCHHHHHHHHHTTCEEEEBSS--CHHHHHHHHHHHHHHCTTEEECST-T
T ss_pred EEeCCcHHHHHHHHHHHHcCCcEEEEEcCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhcCCeEEcCC-C
Confidence 999999999999999999999999999998 999999999999999999986 478999999999988755888887 8
Q ss_pred ChHHHHHHHHHHHHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcC------CCCeEEEEcCCCCccc-cC-------
Q 019047 239 NMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMN------KEIKVVGVEPAERSVI-SG------- 304 (347)
Q Consensus 239 n~~~~~~g~~ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~------~~~~vigVep~~~~~~-~g------- 304 (347)
|+.++ .||.|++.||++|++..+|+||+|+|+||+++|++.++|+.+ +.++||+|||.+++.+ .|
T Consensus 166 n~~~~-~g~~t~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~G~~~~~~~vigve~~~~~~~~~g~~~~~~~ 244 (360)
T 2d1f_A 166 NPVRI-EGQKTAAFEIVDVLGTAPDVHALPVGNAGNITAYWKGYTEYHQLGLIDKLPRMLGTQAAGAAPLVLGEPVSHPE 244 (360)
T ss_dssp CHHHH-HHHTHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHHHHHHHHHTTSCSSCCEEEEEEEGGGCHHHHSSCCSSCC
T ss_pred Chhhh-hhHHHHHHHHHHHcCCCCCEEEEeCCchHHHHHHHHHHHHHHhccccccCceEEEEecCCCCHHhcCCccCCcc
Confidence 88887 599999999999997679999999999999999999999864 3689999999886433 22
Q ss_pred -----CCCCCC-ch----hccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 305 -----ENAGYV-PS----ILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 305 -----~~~~~~-p~----~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
...+.. .+ .+.++.+|+++.|+|+|+++++++|+++|||++||
T Consensus 245 t~a~gl~~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~eGi~~ep 297 (360)
T 2d1f_A 245 TIATAIRIGSPASWTSAVEAQQQSKGRFLAASDEEILAAYHLVARVEGVFVEP 297 (360)
T ss_dssp CSCGGGCCSSCTTHHHHHHHHHHHTCEEEEECHHHHHHHHHHHHHHHCCCBCH
T ss_pred chHHHhCCCCCCcHHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCeeECc
Confidence 111111 11 12345678999999999999999999999999987
|
| >3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-49 Score=381.29 Aligned_cols=257 Identities=23% Similarity=0.201 Sum_probs=224.1
Q ss_pred HHHHHHhccCCCCchhhhhhhccCCCceeec--cccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCe
Q 019047 80 EIEKEEGNDFHGVNIAEDVTQLIGRTPMVYL--NKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKT 157 (347)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~v~~~~~~TPLv~~--~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~ 157 (347)
.+|+ |++++|..+..+++...+++|||+++ ++|++..|++||+|+|++|||||||||++.+++.++.++|. +
T Consensus 5 ~~~r-y~~~lp~~~~~~~v~~~~g~TPL~~~~~~~l~~~~g~~v~~K~E~~~ptgS~KdR~a~~~l~~a~~~g~-----~ 78 (351)
T 3aey_A 5 LIER-YRNLLPVSEKTPVISLLEGSTPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGMTLAVSKAVEGGA-----Q 78 (351)
T ss_dssp HHHH-TGGGTTCCTTSCCCCSCCCCCCEEECCCCHHHHTTTCEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTC-----S
T ss_pred cccc-cHhhCCCcccCCceecCCCCCCeeecCchhhHHHhCCeEEEEecCCCCcccHHHHHHHHHHHHHHhcCC-----C
Confidence 4676 99999975455779999999999999 99998889999999999999999999999999999998885 5
Q ss_pred EEEEeCCChhHHHHHHHHHHcCCcEEEEeCCC-CCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCC
Q 019047 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS-TNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQ 236 (347)
Q Consensus 158 ~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~-~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~ 236 (347)
+|+++|+||||+|+|++|+.+|++|+||||++ ++..|+.+|+.+||+|+.+++ +++++.+.+.+++++. +.+|+++
T Consensus 79 ~vv~~SsGN~g~alA~~a~~~G~~~~iv~p~~~~~~~k~~~~~~~GA~V~~v~~--~~~~~~~~a~~l~~~~-~~~~~~~ 155 (351)
T 3aey_A 79 AVACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVEG--NFDDALRLTQKLTEAF-PVALVNS 155 (351)
T ss_dssp EEEESCSSHHHHHHHHHHHHHTSEEEEEEETTCSCHHHHHHHHHTTCEEEEEES--CHHHHHHHHHHHHHHS-SEEECST
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CcEecCC
Confidence 79999999999999999999999999999998 999999999999999999986 4788999999999887 5888887
Q ss_pred CCChHHHHHHHHHHHHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCC------CCeEEEEcCCCCccc-cC-----
Q 019047 237 FDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNK------EIKVVGVEPAERSVI-SG----- 304 (347)
Q Consensus 237 ~~n~~~~~~g~~ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~------~~~vigVep~~~~~~-~g----- 304 (347)
+|+.++ .||.|++.||++|++..+|+||+|+|+||+++|++.++|+.++ .++||+|||.+++.+ .|
T Consensus 156 -~n~~~~-~g~~t~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~G~~~~~~~vigve~~~~~~~~~g~~~~~ 233 (351)
T 3aey_A 156 -VNPHRL-EGQKTLAFEVVDELGDAPHYHALPVGNAGNITAHWMGYKAYHALGKAKRLPRMLGFQAAGAAPLVLGRPVER 233 (351)
T ss_dssp -TCHHHH-HHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHHHHHHHHHHTSCSSCCEEEEEEEGGGCHHHHTSCCSS
T ss_pred -CCccce-eeeeeHHHHHHHHcCCCCCEEEEecCchHHHHHHHHHHHHHHhccccCCCCeEEEEecCCCChhhcCcccCC
Confidence 888887 5999999999999976799999999999999999999998643 699999999886433 22
Q ss_pred -------CCCCCC-chh----ccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 305 -------ENAGYV-PSI----LDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 305 -------~~~~~~-p~~----l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
...+.. .+. +.++.+|+++.|+|+|+++++++|+++|||++||
T Consensus 234 ~~t~a~gl~~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~ep 288 (351)
T 3aey_A 234 PETLATAIRIGNPASWQGAVRAKEESGGVIEAVTDEEILFAYRYLAREEGIFCEP 288 (351)
T ss_dssp CCCSCGGGCCSSCTTHHHHHHHHHHHTCEEEEECHHHHHHHHHHHHHHTCCCBCH
T ss_pred ccchhHhhcCCCCCCHHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhCCEEECc
Confidence 111111 111 2345678999999999999999999999999987
|
| >1ve5_A Threonine deaminase; riken structural genomics/Pro initiative, RSGI, structural genomics, lyase; HET: PLP; 2.15A {Thermus thermophilus} SCOP: c.79.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-49 Score=378.60 Aligned_cols=242 Identities=21% Similarity=0.271 Sum_probs=213.2
Q ss_pred hhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHH
Q 019047 95 AEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFV 174 (347)
Q Consensus 95 ~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~a 174 (347)
.+++...+++|||+++++|++.+|++||+|+|++|||||||||++.+++.++. + .+.|+++|+||||+|+|++
T Consensus 11 ~~~i~~~~~~TPL~~~~~l~~~~g~~i~~K~E~~~ptgSfKdR~a~~~i~~l~--~-----~~~vv~~ssGN~g~alA~~ 83 (311)
T 1ve5_A 11 FRRIAPYTHRTPLLTSRLLDGLLGKRLLLKAEHLQKTGSFKARGALSKALALE--N-----PKGLLAVSSGNHAQGVAYA 83 (311)
T ss_dssp HHHHGGGSCCCCEEECHHHHHHTTSEEEEEEGGGSGGGBTHHHHHHHHHHHSS--S-----CCCEEEECSSHHHHHHHHH
T ss_pred HHHHhccCCCCCceechhhHHhhCCeEEEEecCCCCcCCcHHHHHHHHHHHhc--C-----CCeEEEECCCcHHHHHHHH
Confidence 46677889999999999999888899999999999999999999999999876 2 2458999999999999999
Q ss_pred HHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHH
Q 019047 175 AAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEI 254 (347)
Q Consensus 175 a~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei 254 (347)
|+.+|++|+||||++++..|+.+|+.+||+|+.++++ ++++.+.+.+++++. +.+|+++|+|+.++ .||.|+++||
T Consensus 84 a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~--~~~~~~~a~~~~~~~-~~~~~~~~~n~~~~-~g~~t~~~Ei 159 (311)
T 1ve5_A 84 AQVLGVKALVVMPEDASPYKKACARAYGAEVVDRGVT--AKNREEVARALQEET-GYALIHPFDDPLVI-AGQGTAGLEL 159 (311)
T ss_dssp HHHHTCCEEEECCCC--CCHHHHHHHTTCEEECTTCC--TTTHHHHHHHHHHHH-CCEECCSSSSHHHH-HHHHHHHHHH
T ss_pred HHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhc-CcEecCCCCCcchh-hhccHHHHHH
Confidence 9999999999999999999999999999999998865 578888999988875 78999999999887 5999999999
Q ss_pred HHhhC---CCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccc-----cCC---------------C---CC
Q 019047 255 WEDTL---GCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVI-----SGE---------------N---AG 308 (347)
Q Consensus 255 ~~ql~---~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~-----~g~---------------~---~~ 308 (347)
++|++ +.+|+||+|+|+||+++|++.++|+.+++++||+|||.+++.+ .|. . ++
T Consensus 160 ~~q~~~~~~~~d~vvvpvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~~~~~g~~~~~~~~~~~i~~gl~~~~~~ 239 (311)
T 1ve5_A 160 LAQAGRMGVFPGAVLAPVGGGGLLAGLATAVKALSPTTLVLGVEPEAADDAKRSLEAGRILRLEAPPRTRADGVRTLSLG 239 (311)
T ss_dssp HHHHHHHTCCCSEEEEECSSSHHHHHHHHHHHHHCTTSEEEEEEEGGGCHHHHHHHHTSCCCCSSCCCCSCGGGCCSSCC
T ss_pred HHHHHhcCCCCCEEEEccCchHHHHHHHHHHHHhCCCCEEEEEEeCCChHHHHHHHcCCccccCCCCCeeeCcCCCCCcc
Confidence 99995 6899999999999999999999999999999999999876432 221 0 12
Q ss_pred CCchhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 309 YVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 309 ~~p~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
..+|.+.++.+|+++.|+|+|+++++++|+++|||++||
T Consensus 240 ~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~ep 278 (311)
T 1ve5_A 240 ERTFPILRERVDGILTVSEEALLEAERLLFTRTKQVVEP 278 (311)
T ss_dssp TTTHHHHHHHCCEEEEECHHHHHHHHHHHHHHTCBCCCG
T ss_pred HHHHHHHHhcCCEEEEECHHHHHHHHHHHHHhcCceEch
Confidence 334556677899999999999999999999999999987
|
| >3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-49 Score=392.43 Aligned_cols=262 Identities=21% Similarity=0.250 Sum_probs=224.7
Q ss_pred HHHhccCCCCchhhhhhhccCCCceeeccccc----cCC----CCeEEEEeCCCCC-CCchhHHHHHHHHHH-----HHH
Q 019047 83 KEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVT----EGC----VGNVAAKLESMEP-CRSVKDRIGYSMITD-----AEE 148 (347)
Q Consensus 83 ~~~~~~~~~~~~~~~v~~~~~~TPLv~~~~l~----~~~----g~~Iy~K~E~~~p-tGSfK~Rga~~~~~~-----a~~ 148 (347)
..|..++|........+.++++|||+++++|+ +.+ |++||+|+|++|| |||||+|++.+++.. +++
T Consensus 57 ~~~~~~l~~~~~~~~~~~g~~~TPL~~~~~l~~~l~~~~g~~~~~~v~lK~E~~~p~tGSfK~Rga~~~i~~l~~~~a~~ 136 (442)
T 3ss7_X 57 SRFAPYLAKAFPETAATGGIIESELVAIPAMQKRLEKEYQQPISGQLLLKKDSHLPISGSIKARGGIYEVLAHAEKLALE 136 (442)
T ss_dssp HHHHHHHHHHSGGGGGGTTCCCCCEEECHHHHHHHHHHHTCCCCSEEEEEEGGGCTTTSBTHHHHHHHHHHHHHHHHHHH
T ss_pred HhCHHhHhhhChhhhccCCCCCCCcEEhHhhhhHHHHhhCCCcCCeEEEeecCCCCCCCCcHHHHHHHHHHHHhHHHHHH
Confidence 33555666555556678889999999999887 544 4799999999999 999999999999986 789
Q ss_pred cCCCCCCC----------------eEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCC
Q 019047 149 SGDITPGK----------------TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEK 212 (347)
Q Consensus 149 ~G~~~~g~----------------~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~ 212 (347)
.|.+.+|. .+|+++|+||||+|+|++|+.+|++|+||||++++..|+.+++.+||+|+.+++
T Consensus 137 ~G~l~~g~~~~~l~~~~~r~~~~~~~vv~aSsGNhg~avA~~aa~~G~~~~Ivmp~~~~~~k~~~~r~~GA~Vv~v~~-- 214 (442)
T 3ss7_X 137 AGLLTLDDDYSKLLSPEFKQFFSQYSIAVGSTGNLGLSIGIMSARIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEQ-- 214 (442)
T ss_dssp TTSCCTTSCGGGGGSHHHHHHHHTSEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEESS--
T ss_pred cCCCCCCcchhhhhhhhhhhhccCcEEEEECCCHHHHHHHHHHHHhCCcEEEEECCCCCHHHHHHHHHCCCEEEEECC--
Confidence 99988876 479999999999999999999999999999999999999999999999999986
Q ss_pred ChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHHHHhhCC--------CCCEEEEecCcchHHHHHHHHHHh
Q 019047 213 GLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLG--------CVDIFVAAIGTGGTITGTGRFLKM 284 (347)
Q Consensus 213 ~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei~~ql~~--------~~D~vv~pvG~Gg~~~Gi~~~~k~ 284 (347)
+++++++++.+++++.+++++++++ |+.++..||.|++.||++|+.. .||+||+|+|+||+++|++.++|+
T Consensus 215 ~~~~a~~~a~~~a~~~~~~~~i~~~-n~~~~~~G~~t~g~Ei~eQl~~~g~~vD~~~Pd~VvvpvG~GG~~aGi~~~lk~ 293 (442)
T 3ss7_X 215 DYGVAVEEGRKAAQSDPNCFFIDDE-NSRTLFLGYSVAGQRLKAQFAQQGRIVDADNPLFVYLPCGVGGGPGGVAFGLKL 293 (442)
T ss_dssp CHHHHHHHHHHHHHTCTTEEECCTT-TCHHHHHHHHHHHHHHHHHHHHHTCCCBTTBCEEEEEECSSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCceeCCCC-ChHHHHHHHHHHHHHHHHHHHhhcCcccccCCCEEEEEeCCchHHHHHHHHHHH
Confidence 5799999999999987778999885 5555557999999999999842 366999999999999999999998
Q ss_pred c-CCCCeEEEEcCCCCccc-----cCCC-----------------------CCCCchhccccccCeEEEeCHHHHHHHHH
Q 019047 285 M-NKEIKVVGVEPAERSVI-----SGEN-----------------------AGYVPSILDVQLLDEVIKVTNDEAVNMAR 335 (347)
Q Consensus 285 ~-~~~~~vigVep~~~~~~-----~g~~-----------------------~~~~p~~l~~~~vd~~v~Vsd~ea~~a~~ 335 (347)
. +++++||||||.+++.+ .|.. ++...+.+.++.+|++++|+|+|++++++
T Consensus 294 ~~~~~v~vigVep~~~~~~~~~~~~G~~~~~~v~~~g~~~~TiAdgl~v~~~~~~~~~~~~~~~d~~~~Vsd~e~~~a~~ 373 (442)
T 3ss7_X 294 AFGDHVHCFFAEPTHSPCMLLGVHTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAMERLLDGFYTLSDQTMYDMLG 373 (442)
T ss_dssp HHGGGEEEEEEEETTCCHHHHHHHHSCGGGCBGGGGTCCCCCSCGGGCCSBCCSSHHHHHGGGCCEEEEECHHHHHHHHH
T ss_pred hcCCCCEEEEEEeCCchHHHHHHhcCCCceeeeccCCCchhhHHhhcCCCCCchhHHHHHHhhCCeEEEECHHHHHHHHH
Confidence 7 78999999999987532 2210 12233455678899999999999999999
Q ss_pred HHHHhcCccccC
Q 019047 336 RLALEEGLLVMC 347 (347)
Q Consensus 336 ~La~~eGI~~G~ 347 (347)
.|+++|||+++|
T Consensus 374 ~L~~~eGi~~ep 385 (442)
T 3ss7_X 374 WLAQEEGIRLEP 385 (442)
T ss_dssp HHHHHHCCCCCG
T ss_pred HHHHHCCCeEcH
Confidence 999999999987
|
| >1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-50 Score=383.33 Aligned_cols=243 Identities=19% Similarity=0.293 Sum_probs=212.7
Q ss_pred hhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHH-cCCCCCCCeEEEEeCCChhHHHHHH
Q 019047 95 AEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEE-SGDITPGKTVLVEPTTGNTGLGIAF 173 (347)
Q Consensus 95 ~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~-~G~~~~g~~~vv~assGN~g~AlA~ 173 (347)
++++...+++|||+++++|++.+|++||+|+|++|||||||||++.+++..+.+ .+ .++||++|+||||+|+|+
T Consensus 17 ~~~i~~~i~~TPL~~~~~l~~~~g~~i~~K~E~~~ptGS~KdRga~~~i~~~~~~~~-----~~~vv~~ssGN~g~alA~ 91 (323)
T 1v71_A 17 SERIKKFANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLNEAQR-----KAGVLTFSSGNHAQAIAL 91 (323)
T ss_dssp HHHHTTTSCCCCEECCHHHHHHHTSEEEEEEGGGSGGGBTHHHHHHHHHTTCCHHHH-----HHCEEECCSSHHHHHHHH
T ss_pred HHHHhccCCCCCceEhHhhHHHhCCeEEEEecCCCCcCCHHHHHHHHHHHHHHHhcC-----CCeEEEeCCCcHHHHHHH
Confidence 356777889999999999988888999999999999999999999999986543 22 246999999999999999
Q ss_pred HHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHH
Q 019047 174 VAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPE 253 (347)
Q Consensus 174 aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~E 253 (347)
+|+.+|++|+||||++++..|+.+++.+||+|+.++++ ++++.+.+.+++++. +.+|+++|+|+.++ .||.|++.|
T Consensus 92 ~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~--~~~~~~~a~~l~~~~-~~~~i~~~~n~~~~-~g~~t~~~E 167 (323)
T 1v71_A 92 SAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDRY--KDDREKMAKEISERE-GLTIIPPYDHPHVL-AGQGTAAKE 167 (323)
T ss_dssp HHHHTTCCEEEEEETTCCHHHHHHHHHTTCEEEEECTT--TTCHHHHHHHHHHHH-TCBCCCSSSSHHHH-HHHTHHHHH
T ss_pred HHHHcCCCEEEECCCCCcHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhc-CCEecCCCCCcchh-hhHhHHHHH
Confidence 99999999999999999999999999999999999865 467888888888876 67889999999887 599999999
Q ss_pred HHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccc-----cCC--------------C---CCCCc
Q 019047 254 IWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVI-----SGE--------------N---AGYVP 311 (347)
Q Consensus 254 i~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~-----~g~--------------~---~~~~p 311 (347)
|++|++ .+|+||+|+|+||+++|++.++|+.+++++||||||.+++.+ .|. . ++..+
T Consensus 168 i~~q~~-~~d~vv~~vG~GGt~~Gi~~~~k~~~~~~~vigve~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~~ 246 (323)
T 1v71_A 168 LFEEVG-PLDALFVCLGGGGLLSGSALAARHFAPNCEVYGVEPEAGNDGQQSFRKGSIVHIDTPKTIADGAQTQHLGNYT 246 (323)
T ss_dssp HHHHHC-CCSEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEEGGGCHHHHHHHHTSCCCCCCCCCSCTTSCCSSCCHHH
T ss_pred HHHhcC-CCCEEEEecCCcHHHHHHHHHHHHcCCCCEEEEEEeCCCchHHHHHHcCCceecCCCCcccccccCCCCcHHH
Confidence 999995 799999999999999999999999999999999999876432 221 1 11223
Q ss_pred hhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 312 SILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 312 ~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
|.+.++.+|+++.|+|+|+++++++|+++|||++||
T Consensus 247 ~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~ep 282 (323)
T 1v71_A 247 FSIIKEKVDDILTVSDEELIDCLKFYAARMKIVVEP 282 (323)
T ss_dssp HHHHHHHCCEEEEECHHHHHHHHHHHHHHTCCCCCG
T ss_pred HHHHHHhCCEEEEECHHHHHHHHHHHHHhcCeEEcH
Confidence 455667899999999999999999999999999997
|
| >2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-48 Score=379.53 Aligned_cols=257 Identities=20% Similarity=0.194 Sum_probs=223.5
Q ss_pred HHHHHHhccCCCCchhhhhhhccCCCceeeccccccCCCCe--EEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCe
Q 019047 80 EIEKEEGNDFHGVNIAEDVTQLIGRTPMVYLNKVTEGCVGN--VAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKT 157 (347)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~v~~~~~~TPLv~~~~l~~~~g~~--Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~ 157 (347)
.+|+ |+.++|..+..+++.+.+++|||+++++|++.+|++ ||+|+|++|||||||||++.+++.++.++|. .
T Consensus 7 ~~~r-y~~~lp~~~~~~~v~~~~g~TPL~~~~~l~~~~g~~~~i~~K~E~~~ptGS~KdR~a~~~l~~a~~~g~-----~ 80 (352)
T 2zsj_A 7 IIKQ-YKKYLPVDENTPIVTLYEGNTPLIEADNLARAIGFKGKIYLKYEGLNPTGSFKDRGMTLAISKAVEAGK-----R 80 (352)
T ss_dssp HHHH-SGGGSSCCTTCCCCCCCCCCCCEEECHHHHHHHTCCSEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTC-----C
T ss_pred ccee-eHhhCCCccCCCceecccCCCCCeehHHHHHHhCCCceEEEEECCCCCCccHHHHHHHHHHHHHHhcCC-----C
Confidence 4565 999999765557899999999999999998878887 9999999999999999999999999999885 5
Q ss_pred EEEEeCCChhHHHHHHHHHHcCCcEEEEeCCC-CCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCC
Q 019047 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS-TNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQ 236 (347)
Q Consensus 158 ~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~-~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~ 236 (347)
+|+++|+||||+|+|++|+.+|++|+||||++ ++..|+.+++.+||+|+.+++ +++++.+.+.+++++. +.+|+++
T Consensus 81 ~vv~~SsGN~g~alA~~a~~~G~~~~i~~p~~~~~~~k~~~~~~~GA~v~~v~~--~~~~~~~~a~~l~~~~-~~~~~~~ 157 (352)
T 2zsj_A 81 AVICASTGNTSASAAAYAARAGLRAYVLLPKGAVAIGKLSQAMIYGAKVLAIQG--TFDDALNIVRKIGENF-PVEIVNS 157 (352)
T ss_dssp EEEECCSSHHHHHHHHHHHHHTCEEEEEEEGGGCCHHHHHHHHHTTCEEEEESS--CHHHHHHHHHHHHHHS-SEEECST
T ss_pred EEEEeCCchHHHHHHHHHHhcCCcEEEEECCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHHc-CcEECCC
Confidence 79999999999999999999999999999998 999999999999999999986 4789999999999887 5888887
Q ss_pred CCChHHHHHHHHHHHHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCC------CCeEEEEcCCCCccc-cC-----
Q 019047 237 FDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNK------EIKVVGVEPAERSVI-SG----- 304 (347)
Q Consensus 237 ~~n~~~~~~g~~ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~------~~~vigVep~~~~~~-~g----- 304 (347)
+|+.++ .||.|++.||++|++..+|+||+|+|+||+++|++.++|+.++ .++||+|||.+++.+ .|
T Consensus 158 -~n~~~~-~g~~t~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~G~~~~~~~vigve~~~~~~~~~g~~~~~ 235 (352)
T 2zsj_A 158 -VNPYRI-EGQKTAAFEICDTLGEAPDYHFIPVGNAGNITAYWKGFKIYYEEGKITKLPRMMGWQAEGAAPIVKGYPIKN 235 (352)
T ss_dssp -TCTHHH-HHHTHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHHHHHHHHHTTSCSSCCEEEEEEETTBCHHHHTSCCSS
T ss_pred -CCcchh-hhHhHHHHHHHHHcCCCCCEEEEeCCCcHHHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCcHHhcCCccCC
Confidence 888887 5999999999999976799999999999999999999998643 689999999987433 22
Q ss_pred -------CCCCCC-chh----ccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 305 -------ENAGYV-PSI----LDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 305 -------~~~~~~-p~~----l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
...+.. .+. +.++.+|+++.|+|+|+++++++|+++|||++||
T Consensus 236 ~~t~a~gl~~~~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~ep 290 (352)
T 2zsj_A 236 PQTIATAIKIGNPYSWKSALKAAQESGGKIDAVSDSEILYAYKLIASTEGVFCEP 290 (352)
T ss_dssp CCCSCGGGCCSSCTTHHHHHHHHHHHTCEEEEECHHHHHHHHHHHHHHHCCCBCH
T ss_pred CcchhHHhcCCCCCcHHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhCCeeECc
Confidence 111111 121 2345678999999999999999999999999987
|
| >2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-48 Score=373.11 Aligned_cols=238 Identities=23% Similarity=0.177 Sum_probs=210.8
Q ss_pred ccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCC
Q 019047 101 LIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGY 180 (347)
Q Consensus 101 ~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl 180 (347)
.+++|||+++++|++.+|++||+|+|++|||||||||++.+++.++.++|. ++|+++|+||||+|+|++|+.+|+
T Consensus 4 ~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptgS~K~R~a~~~l~~a~~~g~-----~~vv~~ssGN~g~alA~~a~~~G~ 78 (318)
T 2rkb_A 4 FHVVTPLLESWALSQVAGMPVFLKCENVQPSGSFKIRGIGHFCQEMAKKGC-----RHLVCSSGGNAGIAAAYAARKLGI 78 (318)
T ss_dssp SSCCCCEEEEHHHHHHHTSCEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTC-----CEEEECCCSHHHHHHHHHHHHHTC
T ss_pred CCccCCceehHhhHHHhCCeEEEEecCCCCCCCHHHHHHHHHHHHHHHcCC-----CEEEEECCchHHHHHHHHHHHcCC
Confidence 567999999999988888899999999999999999999999999998873 679999999999999999999999
Q ss_pred cEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHHHHhhCC
Q 019047 181 KLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLG 260 (347)
Q Consensus 181 ~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei~~ql~~ 260 (347)
+|+||||++++..|+++|+.+||+|+.+++ +++++.+.+.+++++. +.+|+++|+|+.++ .||.|++.||++|+++
T Consensus 79 ~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~n~~~~-~g~~t~~~Ei~~q~~~ 154 (318)
T 2rkb_A 79 PATIVLPESTSLQVVQRLQGEGAEVQLTGK--VWDEANLRAQELAKRD-GWENVPPFDHPLIW-KGHASLVQELKAVLRT 154 (318)
T ss_dssp CEEEEECTTCCHHHHHHHHHTTCEEEECCS--SHHHHHHHHHHHHHST-TEEECCSSCSHHHH-HHHHHHHHHHHHHSSS
T ss_pred CEEEEECCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEeCCCCChhhc-cchhHHHHHHHHhcCC
Confidence 999999999999999999999999999985 5789999999999885 78999999999987 5999999999999976
Q ss_pred CCCEEEEecCcchHHHHHHHHHHhcC-CCCeEEEEcCCCCccc-----cCC--------------CCCCCc---hhcccc
Q 019047 261 CVDIFVAAIGTGGTITGTGRFLKMMN-KEIKVVGVEPAERSVI-----SGE--------------NAGYVP---SILDVQ 317 (347)
Q Consensus 261 ~~D~vv~pvG~Gg~~~Gi~~~~k~~~-~~~~vigVep~~~~~~-----~g~--------------~~~~~p---~~l~~~ 317 (347)
.+|+||+|+|+||+++|++.++|+.+ ++++||+|||.+++.+ .|. ..+..+ +.+.+.
T Consensus 155 ~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~~vi~ve~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~ 234 (318)
T 2rkb_A 155 PPGALVLAVGGGGLLAGVVAGLLEVGWQHVPIIAMETHGAHCFNAAITAGKLVTLPDITSVAKSLGAKTVAARALECMQV 234 (318)
T ss_dssp CCSEEEEECSSSHHHHHHHHHHHHHTCTTSCEEEEEETTBCHHHHHHHHTSCCBCSCCCSSCGGGCCSBCCHHHHHHHHH
T ss_pred CCCEEEEeeCCCcHHHHHHHHHHHhCCCCCEEEEEecCCChHHHHHHHcCCcccCCCCCceecccCCCCCCHHHHHHHHH
Confidence 79999999999999999999999875 7899999999987433 221 111122 233345
Q ss_pred ccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 318 LLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 318 ~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
..++++.|+|+|+++++++|+++|||++||
T Consensus 235 ~~~~~~~v~d~e~~~a~~~l~~~~gi~~ep 264 (318)
T 2rkb_A 235 CKIHSEVVEDTEAVSAVQQLLDDERMLVEP 264 (318)
T ss_dssp SCEEEEEECHHHHHHHHHHHHHHHCBCCCH
T ss_pred cCCEEEEECHHHHHHHHHHHHHhcCcEEch
Confidence 678899999999999999999999999987
|
| >1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-48 Score=392.03 Aligned_cols=242 Identities=23% Similarity=0.325 Sum_probs=217.4
Q ss_pred hhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHH
Q 019047 97 DVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAA 176 (347)
Q Consensus 97 ~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~ 176 (347)
++...+++|||+++++|++.+|++||+|+|++|||||||+|+|.+++..+.+.+. .+.||++|+||||+|+|++|+
T Consensus 24 ~i~~~i~~TPL~~l~~Ls~~~g~~V~lK~E~lqPtgSfKdRgA~n~i~~l~~~~~----~~gVV~aSsGNhg~avA~aa~ 99 (514)
T 1tdj_A 24 PVYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQK----AHGVITASAGNHAQGVAFSSA 99 (514)
T ss_dssp CGGGTCCCCCEEECHHHHHHTTSEEEEECGGGSTTSSSTHHHHHHHHHTTTTSSC----SSSCEEEECSSSHHHHHHHHH
T ss_pred hHhcccCCCCcEEchhhHHhhCCeEEEEECCCCCcccHHHHHHHHHHHHHHHhcC----CCEEEEECCcHHHHHHHHHHH
Confidence 5778899999999999999889999999999999999999999999998865443 356999999999999999999
Q ss_pred HcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHHHH
Q 019047 177 VKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWE 256 (347)
Q Consensus 177 ~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei~~ 256 (347)
.+|++|+||||.+++..|+++++.+||+|+.++. +++++.+.|.+++++. +.+|+++|+|+.++ .||.|+++||++
T Consensus 100 ~lGi~~~IvmP~~~p~~Kv~~~r~~GAeVvlv~~--~~dda~~~a~ela~e~-g~~~v~pfdnp~~i-aGqgTig~EI~e 175 (514)
T 1tdj_A 100 RLGVKALIVMPTATADIKVDAVRGFGGEVLLHGA--NFDEAKAKAIELSQQQ-GFTWVPPFDHPMVI-AGQGTLALELLQ 175 (514)
T ss_dssp HTTCCEEEECCSSCCHHHHHHHHHHSCEEECCCS--SHHHHHHHHHHHHHHH-CCEECCSSCCHHHH-HHHHHHHHHHHH
T ss_pred HcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEeeCCCCCHHHH-HHHHHHHHHHHH
Confidence 9999999999999999999999999999999885 5799999999999886 78999999999997 699999999999
Q ss_pred hhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCcccc-----CC-----------------CCCCCchhc
Q 019047 257 DTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVIS-----GE-----------------NAGYVPSIL 314 (347)
Q Consensus 257 ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~-----g~-----------------~~~~~p~~l 314 (347)
|+.+ +|+||+|+|+||+++|++.++|+.+|+++||||||.+++.+. |. .++..++.+
T Consensus 176 Ql~~-~D~vvvpvGgGGliaGia~~lk~~~P~~kVIgVep~~a~~l~~sl~~G~~~~l~~v~tiadGiav~~~g~~~~~l 254 (514)
T 1tdj_A 176 QDAH-LDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSACLKAALDAGHPVDLPRVGLFAEGVAVKRIGDETFRL 254 (514)
T ss_dssp HCTT-CCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEETTTCHHHHHHHHTSCCCCSCCCSSSSTTCCSSCCCHHHHH
T ss_pred HCCC-CCEEEEccCcHHHHHHHHHHHHHhCCCCEEEEEeccCChhHHHHHhcCCeeecCCccccccchhcCCCChHHHHH
Confidence 9955 999999999999999999999999999999999999875432 21 012234567
Q ss_pred cccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 315 DVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 315 ~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.++.+|++++|+|+|+.+++++|++++|++++|
T Consensus 255 ~~~~vd~~v~Vsd~ei~~ai~~L~~~~givvEP 287 (514)
T 1tdj_A 255 CQEYLDDIITVDSDAICAAMKDLFEDVRAVAEP 287 (514)
T ss_dssp HTTSCCEEEEECHHHHHHHHHHHHHHTCCCCCH
T ss_pred HHHhCCeEEEECHHHHHHHHHHHHHHcCeEEcH
Confidence 788999999999999999999999999999986
|
| >3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive PROT jasmonic acid pathway, jasmonic acid,structural genomics; HET: LLP 15P; 2.35A {Solanum lycopersicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-48 Score=381.66 Aligned_cols=243 Identities=21% Similarity=0.272 Sum_probs=216.9
Q ss_pred hhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHH
Q 019047 96 EDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVA 175 (347)
Q Consensus 96 ~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa 175 (347)
.++...+++|||+++++|++.+|++||+|+|++|||||||||++.+++.++.+.+. ..+|+++|+||||+|+|++|
T Consensus 52 ~~i~~~i~~TPL~~l~~l~~~~g~~i~~K~E~~~ptgSfKdRga~~~i~~l~~~~~----~~~vv~assGN~g~a~A~aa 127 (366)
T 3iau_A 52 SPVYDVAIESPLELAEKLSDRLGVNFYIKREDKQRVFSFKLRGAYNMMSNLSREEL----DKGVITASAGNHAQGVALAG 127 (366)
T ss_dssp CCGGGTCCCCCEEECHHHHHHHTSEEEEEEGGGSTTSBTTHHHHHHHHHTSCHHHH----HHCEEEECSSHHHHHHHHHH
T ss_pred HHHhhhcCCCCcEEhhhhhHhhCCEEEEEecCCCCCcchHHHHHHHHHHHHHHhCC----CCEEEEeCCCHHHHHHHHHH
Confidence 46788899999999999999889999999999999999999999999987644322 24599999999999999999
Q ss_pred HHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHHH
Q 019047 176 AVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIW 255 (347)
Q Consensus 176 ~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei~ 255 (347)
+.+|++|+||||++++..|+.+++.+||+|+.+++ +++++++.+.+++++. +++|+++|+|+.++ .||.|++.||+
T Consensus 128 ~~~G~~~~iv~P~~~~~~k~~~~~~~GA~V~~v~~--~~~~~~~~a~~~~~~~-~~~~i~~~~n~~~i-~g~~t~~~Ei~ 203 (366)
T 3iau_A 128 QRLNCVAKIVMPTTTPQIKIDAVRALGGDVVLYGK--TFDEAQTHALELSEKD-GLKYIPPFDDPGVI-KGQGTIGTEIN 203 (366)
T ss_dssp HHTTCCEEEEECTTCCHHHHHHHHHTTCEEEECCS--SHHHHHHHHHHHHHHH-TCEECCSSSSHHHH-HHHHHHHHHHH
T ss_pred HHhCCceEEEeCCCCCHHHHHHHHHCCCeEEEECc--CHHHHHHHHHHHHHhc-CCEecCCCCChHHH-HHHHHHHHHHH
Confidence 99999999999999999999999999999999984 5789999999999886 78999999999987 69999999999
Q ss_pred HhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCcccc-----CC-----------------CCCCCchh
Q 019047 256 EDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVIS-----GE-----------------NAGYVPSI 313 (347)
Q Consensus 256 ~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~-----g~-----------------~~~~~p~~ 313 (347)
+|+ +.+|+||+|+|+||+++|++.++|+.+++++||+|||.+++.+. |. .++..++.
T Consensus 204 ~q~-~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~vigVe~~~~~~l~~~~~~g~~~~~~~~~tia~gl~~~~~~~~~~~ 282 (366)
T 3iau_A 204 RQL-KDIHAVFIPVGGGGLIAGVATFFKQIAPNTKIIGVEPYGAASMTLSLHEGHRVKLSNVDTFADGVAVALVGEYTFA 282 (366)
T ss_dssp HHC-CSEEEEEEECSSSHHHHHHHHHHHHHSTTSEEEEEEEGGGCHHHHHHHHTSCCEESCCCCSSGGGCCSSCCHHHHH
T ss_pred Hhc-CCCCEEEEccCchHHHHHHHHHHHHhCCCCeEEEEeecCChHHHHHHHcCCCCcCCCccchhhhhcCCCCcHHHHH
Confidence 999 78999999999999999999999999999999999999875332 21 11223456
Q ss_pred ccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 314 LDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 314 l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
+.++.+|+++.|+|+|+.++++.|++++||+++|
T Consensus 283 ~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~ep 316 (366)
T 3iau_A 283 KCQELIDGMVLVANDGISAAIKDVYDEGRNILET 316 (366)
T ss_dssp HHHHHCCEEEEECHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHhcCCCceeECHHHHHHHHHHHHHHcCcEEcH
Confidence 6678899999999999999999999999999986
|
| >1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-48 Score=379.91 Aligned_cols=267 Identities=22% Similarity=0.275 Sum_probs=221.4
Q ss_pred cchhhHHHHHHHhccCCCCchhhhh---hhccCCCceeeccccccCCCCeEEEEeCCCCC-CCchhHHHHHHHHHHHHHc
Q 019047 74 YATSTREIEKEEGNDFHGVNIAEDV---TQLIGRTPMVYLNKVTEGCVGNVAAKLESMEP-CRSVKDRIGYSMITDAEES 149 (347)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~p-tGSfK~Rga~~~~~~a~~~ 149 (347)
..+...|+.. |.+..+.+...+.+ ...+++|||+++++|++. |++||+|+|++|| |||||+|++.+++..+.
T Consensus 64 ~~~~~~~l~~-~~~~~~~~~~~~~~~~~~g~~~~TPL~~l~~Ls~~-g~~IylK~E~lnp~tGS~K~R~a~~~i~~l~-- 139 (389)
T 1wkv_A 64 CSHTLEELGV-FDISVPGEMVFPSPLDFFERGKPTPLVRSRLQLPN-GVRVWLKLEWYNPFSLSVKDRPAVEIISRLS-- 139 (389)
T ss_dssp CEEETTTTTT-TCCCSCTTCEESSHHHHHHHSCSCCEEECCCCCST-TEEEEEEEGGGSTTTSBTTHHHHHHHHHHHT--
T ss_pred HHHHHHHHHh-HHHhcCChHHHHHHHHHhCCCCCCCeEEccccccC-CCeEEEEEcCCCCCcCChHHHHHHHHHHHHH--
Confidence 3334445553 66555554222223 233468999999999886 8899999999999 99999999999999855
Q ss_pred CCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEE-EECCCCChHHHHHHHHHHHHcC
Q 019047 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII-LTDPEKGLRGALDKAEEIVLNT 228 (347)
Q Consensus 150 G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~-~~~~~~~~~~a~~~a~~~a~~~ 228 (347)
+.++.| ++|+++|+||||+|+|++|+.+|++|+||||++++..|+.+|+.+||+|+ .++. .+++++++++.+++++.
T Consensus 140 ~a~~~g-~~Iv~assGNhG~AlA~aaa~~Gl~~~ivmp~~~~~~k~~~~~~~GAeVv~~v~~-~~~~da~~~a~~~~~~~ 217 (389)
T 1wkv_A 140 RRVEKG-SLVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEA-PSTVHLLPRVMKDSKNE 217 (389)
T ss_dssp TTSCTT-CEEEEECCHHHHHHHHHHHHHTTCEEEEEEETTSCHHHHHHHHHTTCEEEEETTC-SSSGGGHHHHHHHHHHH
T ss_pred HHHhcC-CEEEEECCcHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCEEEEEcCC-CCHHHHHHHHHHHHHcc
Confidence 333445 56899999999999999999999999999999999999999999999999 7762 25789999999988775
Q ss_pred CCceecCCCCChHHHHHHHHHHHHHHHHhhC---CCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccccCC
Q 019047 229 PNAYMFQQFDNMANLKIHFDSTGPEIWEDTL---GCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGE 305 (347)
Q Consensus 229 ~~~~~~~~~~n~~~~~~g~~ti~~Ei~~ql~---~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~g~ 305 (347)
+.+|+++|+|+.+++.||+|++.||++|+. ..||+||+|+|+|||++|++.+|++.+++++||||||.+++.+.|.
T Consensus 218 -g~~~~~p~~N~~~~~~~~~t~g~Ei~~Q~~~~g~~~D~vv~~vG~GG~~~Gi~~~~k~~~p~vrvigVe~~~~~~l~Gi 296 (389)
T 1wkv_A 218 -GFVHVNQFYNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPGI 296 (389)
T ss_dssp -CCEECCTTTCHHHHHHHHHTHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHCTTCEEEEEEECTTCCCTTC
T ss_pred -CcEecCcCCChHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHHHhCCCCeEEEEecCCCCccccc
Confidence 789999999998888899999999999994 3799999999999999999999999899999999999988666553
Q ss_pred CC-CCCchhccccccC-eEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 306 NA-GYVPSILDVQLLD-EVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 306 ~~-~~~p~~l~~~~vd-~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.. +..+..+....+| +++.|+|+|+++++++|+++|||++||
T Consensus 297 ~~i~~~~~~~~~~~~dg~~~~Vsd~ea~~a~~~l~~~eGi~~~p 340 (389)
T 1wkv_A 297 RRVETGMLWINMLDISYTLAEVTLEEAMEAVVEVARSDGLVIGP 340 (389)
T ss_dssp CCGGGCCSHHHHSCCCCEEEEECHHHHHHHHHHHHHHHSCCBCH
T ss_pred cccCCcchhhhhheeccEEEEECHHHHHHHHHHHHHHcCCeECh
Confidence 21 1112233445678 999999999999999999999999986
|
| >1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-48 Score=369.61 Aligned_cols=245 Identities=20% Similarity=0.199 Sum_probs=217.4
Q ss_pred hhhhhccCCCceeeccccccCCCCeEEEEeCCCCC--CCchhHHHHHHHHHHHHHcCCCCCCCeEEEEe--CCChhHHHH
Q 019047 96 EDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEP--CRSVKDRIGYSMITDAEESGDITPGKTVLVEP--TTGNTGLGI 171 (347)
Q Consensus 96 ~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~p--tGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~a--ssGN~g~Al 171 (347)
+++...+++|||+++++|++..|++||+|+|++|| +||||+|.+.+++.+++++|. .+||++ |+||||+|+
T Consensus 13 ~~i~~~~~~TPL~~~~~l~~~~g~~i~~K~E~~~p~~~gs~K~R~~~~~i~~a~~~G~-----~~vv~~G~ssGN~g~al 87 (325)
T 1j0a_A 13 PRVELIPWETPIQYLPNISREIGADVYIKRDDLTGLGIGGNKIRKLEYLLGDALSKGA-----DVVITVGAVHSNHAFVT 87 (325)
T ss_dssp CCCCCCCSCCCEEECHHHHHHHTSEEEEEEGGGSCSTTCSTHHHHHHHHHHHHHHTTC-----SEEEEECCTTCHHHHHH
T ss_pred CCcccccCCCCceEhhhhhhhhCCEEEEEecccCCCCCCchHHHHHHHHHHHHHHcCC-----CEEEEcCCcchHHHHHH
Confidence 45788999999999999988788999999999999 899999999999999999996 457776 999999999
Q ss_pred HHHHHHcCCcEEEEeCCCC-CHHHHHHHHhcCCEEEEECCCCCh---HHHHHHHHHHHHcCCCce-ecCCCCChHHHHHH
Q 019047 172 AFVAAVKGYKLIVTMPAST-NLERRILLRAFGAEIILTDPEKGL---RGALDKAEEIVLNTPNAY-MFQQFDNMANLKIH 246 (347)
Q Consensus 172 A~aa~~~Gl~~~I~vp~~~-~~~~~~~l~~~GA~V~~~~~~~~~---~~a~~~a~~~a~~~~~~~-~~~~~~n~~~~~~g 246 (347)
|++|+.+|++|+||||+++ +..|+.+++.+||+|+.++.+.+. +++.+.+.+++++.+..| +..++.|+.++ .|
T Consensus 88 A~~a~~~G~~~~iv~p~~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~p~~~~n~~~~-~g 166 (325)
T 1j0a_A 88 GLAAKKLGLDAILVLRGKEELKGNYLLDKIMGIETRVYDAKDSFELMKYAEEIAEELKREGRKPYVIPPGGASPIGT-LG 166 (325)
T ss_dssp HHHHHHTTCEEEEEEESCCCSCHHHHHHHHTTCEEEEESCCSTTTHHHHHHHHHHHHTTSSCCEEEECGGGCSHHHH-TH
T ss_pred HHHHHHhCCcEEEEECCCCCCCchHHHHHHCCCEEEEeCcchhhhhhHHHHHHHHHHHHcCCceEEEcCCCCCHHHH-HH
Confidence 9999999999999999999 999999999999999999976543 267788888888765533 45777898887 58
Q ss_pred HHHHHHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCcccc-------------CC-CCCCCch
Q 019047 247 FDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVIS-------------GE-NAGYVPS 312 (347)
Q Consensus 247 ~~ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~-------------g~-~~~~~p~ 312 (347)
|.|++.||++|+++.+|+||+|+|+||+++|++.++|+.+++++||||||.+++.+. +. .++..|+
T Consensus 167 ~~t~~~Ei~~q~~~~~d~vv~~vGtGGt~~Gi~~~lk~~~~~~~vigVe~~~~~~~~~~~~~t~~~~~~~~~g~~~~~~~ 246 (325)
T 1j0a_A 167 YVRAVGEIATQSEVKFDSIVVAAGSGGTLAGLSLGLSILNEDIRPVGIAVGRFGEVMTSKLDNLIKEAAELLGVKVEVRP 246 (325)
T ss_dssp HHHHHHHHHHHCCCCCSEEEEEESSSHHHHHHHHHHHHTTCCCEEEEEECSSCSSSHHHHHHHHHHHHHHHTTCCCCSCC
T ss_pred HHHHHHHHHHhhCCCCCEEEEeCCchHhHHHHHHHHHhcCCCceEEEEEecCchHHHHHHHHHHHHHHHHhcCCCCCCCc
Confidence 999999999999768999999999999999999999999999999999999875331 12 2556788
Q ss_pred hccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 313 ILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 313 ~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.+.++.+|+ +.|+|+|+++++++|+++|||++||
T Consensus 247 ~~~~~~~~~-~~v~d~e~~~a~~~l~~~~gi~~ep 280 (325)
T 1j0a_A 247 ELYDYSFGE-YGKITGEVAQIIRKVGTREGIILDP 280 (325)
T ss_dssp EEEECSTTS-TTCCCHHHHHHHHHHHHHHSCCCCT
T ss_pred EEecCcccC-CCCCCHHHHHHHHHHHHhhCccccc
Confidence 888899999 9999999999999999999999997
|
| >4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-47 Score=367.70 Aligned_cols=248 Identities=19% Similarity=0.173 Sum_probs=214.4
Q ss_pred hhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCC--CCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeC--CChhHH
Q 019047 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEP--CRSVKDRIGYSMITDAEESGDITPGKTVLVEPT--TGNTGL 169 (347)
Q Consensus 94 ~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~p--tGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~as--sGN~g~ 169 (347)
..+++...+++|||+++++|++.+|++||+|+|++|| +||||+|++.+++..++++|. ++||++| +||||+
T Consensus 22 a~~ri~~~~~~TPL~~~~~l~~~~g~~v~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~G~-----~~vv~~s~tsGN~g~ 96 (342)
T 4d9b_A 22 RFPRLEFIGAPTPLEYLPRLSDYLGREIYIKRDDVTPIAMGGNKLRKLEFLVADALREGA-----DTLITAGAIQSNHVR 96 (342)
T ss_dssp GSCCCCSSCSCCCEEECHHHHHHHTSCEEEEEGGGCSSTTCCTHHHHHHHHHHHHHHTTC-----CEEEEEEETTCHHHH
T ss_pred cCCcccccCCCCceeEhhhhHHhhCCEEEEEeCCCCCCCCcchHHHhHHHHHHHHHHcCC-----CEEEEcCCcccHHHH
Confidence 3467888999999999999998888999999999999 999999999999999999986 5578886 799999
Q ss_pred HHHHHHHHcCCcEEEEeCCCCCH--------HHHHHHHhcCCEEEEECCCCChHHHHH-HHHHHHHcCCCcee-cCCCCC
Q 019047 170 GIAFVAAVKGYKLIVTMPASTNL--------ERRILLRAFGAEIILTDPEKGLRGALD-KAEEIVLNTPNAYM-FQQFDN 239 (347)
Q Consensus 170 AlA~aa~~~Gl~~~I~vp~~~~~--------~~~~~l~~~GA~V~~~~~~~~~~~a~~-~a~~~a~~~~~~~~-~~~~~n 239 (347)
|+|++|+.+|++|+||||++++. .|+.+++.+||+|+.++...+.+++++ .+.+++++.+..|+ ..++.|
T Consensus 97 alA~aa~~~G~~~~iv~p~~~~~~~~~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~p~~~~n 176 (342)
T 4d9b_A 97 QTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEMCDALTDPDAQLQTLATRIEAQGFRPYVIPVGGSS 176 (342)
T ss_dssp HHHHHHHHHTCEEEEEEECTTCCCCHHHHHSHHHHHHHHTTCEEEECSCCSSHHHHHHHHHHHHHHTTCCEEECCGGGCS
T ss_pred HHHHHHHHhCCcEEEEEeCCCCCccccccccchHHHHHHCCCEEEEECchhhHHHHHHHHHHHHHhcCCceEEeCCCCCC
Confidence 99999999999999999998763 589999999999999987655666664 45666666543343 345567
Q ss_pred hHHHHHHHHHHHHHHHHhhC--CCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCcccc-------------C
Q 019047 240 MANLKIHFDSTGPEIWEDTL--GCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVIS-------------G 304 (347)
Q Consensus 240 ~~~~~~g~~ti~~Ei~~ql~--~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~-------------g 304 (347)
+.++ .||.|++.||++|+. ..+|+||+|+|+||+++|++.++|+.+++++||||||.+++... |
T Consensus 177 ~~~~-~G~~t~~~EI~~q~~~~~~~d~vv~~vGtGGt~aGi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~t~a~g 255 (342)
T 4d9b_A 177 ALGA-MGYVESALEIAQQCEEVVGLSSVVVASGSAGTHAGLAVGLEHLMPDVELIGVTVSRSVAEQKPKVIALQQAIAGQ 255 (342)
T ss_dssp HHHH-HHHHHHHHHHHHHHTTTCCCCEEEEEESSSHHHHHHHHHHHHHCTTSEEEEEESSSCHHHHHHHHHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHHhccCCCCEEEEeCCCCHHHHHHHHHHHhhCCCCeEEEEEecCcHHHHHHHHHHHHHHHHHH
Confidence 7775 699999999999996 48999999999999999999999999999999999999874321 2
Q ss_pred CCC-CCCchhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 305 ENA-GYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 305 ~~~-~~~p~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
... +..++.+.++.+|+++.|+|+|+++++++|+++|||++||
T Consensus 256 l~~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~ep 299 (342)
T 4d9b_A 256 LALTATADIHLWDDYFAPGYGVPNDAGMEAVKLLASLEGVLLDP 299 (342)
T ss_dssp TTCCCCCCCEEECTTSTTCTTCCCHHHHHHHHHHHHHHSCCCCT
T ss_pred cCCCCccceEEEecCCCceEecCCHHHHHHHHHHHHhcCccccc
Confidence 222 6678888889999999999999999999999999999997
|
| >1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-47 Score=368.68 Aligned_cols=246 Identities=19% Similarity=0.156 Sum_probs=214.5
Q ss_pred hhhhhccCCCceeeccccccCC-C-CeEEEEeCCCC-C--CCchhHHHHHHHHHHHHHcCCCCCCCeEEEE--eCCChhH
Q 019047 96 EDVTQLIGRTPMVYLNKVTEGC-V-GNVAAKLESME-P--CRSVKDRIGYSMITDAEESGDITPGKTVLVE--PTTGNTG 168 (347)
Q Consensus 96 ~~v~~~~~~TPLv~~~~l~~~~-g-~~Iy~K~E~~~-p--tGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~--assGN~g 168 (347)
+++...+++|||+++++|++.+ | ++||+|+|++| | +||||+|++.+++.++.++|. ++||+ +|+||||
T Consensus 7 ~~i~~~~~~TPL~~~~~l~~~~~g~~~i~~K~E~~n~p~~~Gs~K~R~a~~~l~~a~~~g~-----~~vv~~G~ssGN~g 81 (341)
T 1f2d_A 7 AKYPLTFGPSPISNLNRLSQHLGSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGDY-----THLVSIGGRQSNQT 81 (341)
T ss_dssp CCCCCSSSSCCEEECHHHHHHTTTCSEEEEEEGGGSCSSTTCCHHHHHHTTTHHHHHHSCC-----SEEEEEEETTCHHH
T ss_pred CCcccCCCCCcceeHHhHHHhhCCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHHHHcCC-----CEEEEcCCcchHHH
Confidence 4678889999999999999888 7 89999999999 9 999999999999999999885 56888 9999999
Q ss_pred HHHHHHHHHcCCcEEEEeCCCCC-----HH------HHHHHHhcCCEEEEECCCCCh---HHHHHHHHHHHHcCCCce-e
Q 019047 169 LGIAFVAAVKGYKLIVTMPASTN-----LE------RRILLRAFGAEIILTDPEKGL---RGALDKAEEIVLNTPNAY-M 233 (347)
Q Consensus 169 ~AlA~aa~~~Gl~~~I~vp~~~~-----~~------~~~~l~~~GA~V~~~~~~~~~---~~a~~~a~~~a~~~~~~~-~ 233 (347)
+|+|++|+.+|++|+||||++++ .. |+.+++.+||+|+.++.+.+. +.+.+.+.+++++.+..+ +
T Consensus 82 ~alA~~a~~~G~~~~iv~p~~~~~~~~~~~~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~i 161 (341)
T 1f2d_A 82 RMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADVRVIEDGFDIGMRKSFANALQELEDAGHKPYPI 161 (341)
T ss_dssp HHHHHHHHHHTCEEEEEEECCSCCCGGGTTTTTTSHHHHHHHHTTCEEEECCCCCCSSCCHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHhCCceEEEeccCCCccccccccccccccHHHHHhCCCEEEEeCCccchhHHHHHHHHHHHHHhcCCcEEEe
Confidence 99999999999999999999887 34 999999999999999865432 357778888888765344 4
Q ss_pred cCC-CCChHHHHHHHHHHHHHHHHhhC---CCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCcccc------
Q 019047 234 FQQ-FDNMANLKIHFDSTGPEIWEDTL---GCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVIS------ 303 (347)
Q Consensus 234 ~~~-~~n~~~~~~g~~ti~~Ei~~ql~---~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~------ 303 (347)
.++ |+|+.++ .||.|++.||++|+. ..+|+||+|+|+||+++|++.++|+.+++++||||||.+++.+.
T Consensus 162 ~~~~~~np~~~-~G~~t~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~ 240 (341)
T 1f2d_A 162 PAGCSEHKYGG-LGFVGFADEVINQEVELGIKFDKIVVCCVTGSTTAGILAGMAQYGRQDDVIAIDASFTSEKTKEQTLR 240 (341)
T ss_dssp CGGGTTSTTTT-THHHHHHHHHHHHHHHHTCCCSEEEEEESSSHHHHHHHHHHGGGTCGGGEEEEECSSCHHHHHHHHHH
T ss_pred CCCcCCCCccH-HHHHHHHHHHHHHHHhcCCCCCEEEEecCchHhHHHHHHHHHhcCCCceEEEEEecCchHHHHHHHHH
Confidence 588 9999998 599999999999996 47999999999999999999999999999999999999875331
Q ss_pred -------CCC-C-CCCchhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 304 -------GEN-A-GYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 304 -------g~~-~-~~~p~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
+.. + +..++.+.++.+|+.+.|+|+|+++++++|+++|||++||
T Consensus 241 ~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~egi~~ep 293 (341)
T 1f2d_A 241 IANNTAKLIGVEHEFKDFTLDTRFAYPCYGVPNEGTIEAIRTCAEQEGVLTDP 293 (341)
T ss_dssp HHHHHHHHHTCCCCCSCCCEECTTSTTBTTBCCHHHHHHHHHHHHHHSCCCCT
T ss_pred HHHHHHHHcCCCCCcCeEEEecCcccceEecCCHHHHHHHHHHHHHcCCcccc
Confidence 111 1 2245567788899999999999999999999999999997
|
| >4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-46 Score=371.35 Aligned_cols=243 Identities=18% Similarity=0.157 Sum_probs=208.1
Q ss_pred ccCCCceeeccccccCCC-CeEEEEeCCCC-CCCchhHHHHHHHHHHHH--HcCC----C--------CCCCe-EEEEeC
Q 019047 101 LIGRTPMVYLNKVTEGCV-GNVAAKLESME-PCRSVKDRIGYSMITDAE--ESGD----I--------TPGKT-VLVEPT 163 (347)
Q Consensus 101 ~~~~TPLv~~~~l~~~~g-~~Iy~K~E~~~-ptGSfK~Rga~~~~~~a~--~~G~----~--------~~g~~-~vv~as 163 (347)
.+++|||+++++|++.+| ++||+|+|++| |+||||+|++.+++.++. +.|. + .+ .+ +||++|
T Consensus 41 ~~~~TPL~~~~~l~~~~g~~~i~~K~E~~~~ptgSfK~Rga~~~i~~~~~~~~G~~~~~l~~e~l~~~~~-~~~~vv~aS 119 (398)
T 4d9i_A 41 GYRPTPLCALDDLANLFGVKKILVKDESKRFGLNAFXMLGGAYAIAQLLCEKYHLDIETLSFEHLKNAIG-EKMTFATTT 119 (398)
T ss_dssp TCCCCCEEECHHHHHHHTSSEEEEEEGGGSTTTTBSTHHHHHHHHHHHHHHHHTCCGGGCCHHHHHHCCS-CCCEEEEEC
T ss_pred CCCCCCceehHHHHHHhCCCcEEEEECCCCCCCCcchhhhhHHHHHHHHHHhhcccccccchhhhhhhcc-CCCEEEEEC
Confidence 457999999999999888 59999999999 999999999999999884 3331 0 11 34 799999
Q ss_pred CChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCC-----CC
Q 019047 164 TGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQ-----FD 238 (347)
Q Consensus 164 sGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~-----~~ 238 (347)
+||||+|+|++|+.+|++|+||||++++..|+.+++.+||+|+.+++ +++++++.+.+++++. +++|+++ |+
T Consensus 120 sGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~--~~~~a~~~a~~~~~~~-g~~~v~~~~~~g~~ 196 (398)
T 4d9i_A 120 DGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTDM--NYDDTVRLTMQHAQQH-GWEVVQDTAWEGYT 196 (398)
T ss_dssp SSHHHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHTTTCEEEECSS--CHHHHHHHHHHHHHHH-TCEECCSSCBTTBC
T ss_pred CCHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHHc-CCEEecCcccCCcC
Confidence 99999999999999999999999999999999999999999999986 5789999999999886 7888885 76
Q ss_pred -ChHHHHHHHHHHHHHHHHhhCCC---CCEEEEecCcchHHHHHHHHHHhc--CCCCeEEEEcCCCCcccc-----CC--
Q 019047 239 -NMANLKIHFDSTGPEIWEDTLGC---VDIFVAAIGTGGTITGTGRFLKMM--NKEIKVVGVEPAERSVIS-----GE-- 305 (347)
Q Consensus 239 -n~~~~~~g~~ti~~Ei~~ql~~~---~D~vv~pvG~Gg~~~Gi~~~~k~~--~~~~~vigVep~~~~~~~-----g~-- 305 (347)
|+.+...||.|++.||++|+.+. ||+||+|+|+||+++|++.++|+. .++++||+|||.+++.+. |.
T Consensus 197 ~~~~~~~~G~~t~~~Ei~~q~~~~g~~~d~vvvpvG~GG~~aGi~~~~k~~~~~~~~~vigVep~~~~~~~~s~~~g~~~ 276 (398)
T 4d9i_A 197 KIPTWIMQGYATLADEAVEQMREMGVTPTHVLLQAGVGAMAGGVLGYLVDVYSPQNLHSIIVEPDKADCIYRSGVKGDIV 276 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEECSSSHHHHHHHHHHHHHHCTTSCEEEEEEETTSCHHHHHHHHTSCC
T ss_pred CCCchhhhhHHHHHHHHHHHhhhcCCCCCEEEEecCccHHHHHHHHHHHHhcCCCCCEEEEEEeCCCchHHHHHHcCCce
Confidence 45566679999999999999544 999999999999999999999876 468999999999875432 21
Q ss_pred ----------------CCCCCchhccccccCeEEEeCHHHHHHHHHHHHHhcC----ccccC
Q 019047 306 ----------------NAGYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEG----LLVMC 347 (347)
Q Consensus 306 ----------------~~~~~p~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eG----I~~G~ 347 (347)
.++...|.+.++.+|+++.|+|+|+++++++|++.|| |++||
T Consensus 277 ~~~~~~~tia~gl~~~~p~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~eG~~~~i~~ep 338 (398)
T 4d9i_A 277 NVGGDMATIMAGLACGEPNPLGWEILRNCATQFISCQDSVAALGMRVLGNPYGNDPRIISGE 338 (398)
T ss_dssp CC------CCTTCCCSSCCHHHHHHHHHHCCEEEEECTHHHHHHHHHHHSCSTTCCCCCCCH
T ss_pred ecCCCCCceeccccCCCCCHHHHHHHHHcCCeEEEECHHHHHHHHHHHHHhhCCCCcEEECc
Confidence 1112234455788999999999999999999999999 99986
|
| >1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-46 Score=357.27 Aligned_cols=245 Identities=20% Similarity=0.170 Sum_probs=206.5
Q ss_pred hhhhhccCCCceeeccccccCC-C-CeEEEEeCCCC-C--CCchhHHHHHHHHHHHHHcCCCCCCCeEEEE--eCCChhH
Q 019047 96 EDVTQLIGRTPMVYLNKVTEGC-V-GNVAAKLESME-P--CRSVKDRIGYSMITDAEESGDITPGKTVLVE--PTTGNTG 168 (347)
Q Consensus 96 ~~v~~~~~~TPLv~~~~l~~~~-g-~~Iy~K~E~~~-p--tGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~--assGN~g 168 (347)
+++...+++|||+++++|++.+ | ++||+|+|++| | +||||+|++.+++.+++++|. .+||+ +|+||||
T Consensus 7 ~~i~~~~~~TPL~~~~~l~~~~~g~~~i~~K~E~~n~p~~~gs~K~R~a~~~l~~a~~~g~-----~~vv~~GassGN~g 81 (338)
T 1tzj_A 7 PRYPLTFGPTPIQPLARLSKHLGGKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEALAQGC-----DTLVSIGGIQSNQT 81 (338)
T ss_dssp CCCCCSSSSCCEEECHHHHHHTTSSSEEEEEEGGGSCSSTTCCHHHHHHHTTHHHHHHTTC-----CEEEEEEETTCHHH
T ss_pred CccccCCCCCccEEHHHHHHhhCCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHHHHcCC-----CEEEEcCCchhHHH
Confidence 5688899999999999999888 7 89999999997 8 999999999999999998885 45777 7999999
Q ss_pred HHHHHHHHHcCCcEEEEeCCCCCHH--------HHHHHHhcCCEEEEECCCCChH---HHHHHHHHHHHcCCCcee-cCC
Q 019047 169 LGIAFVAAVKGYKLIVTMPASTNLE--------RRILLRAFGAEIILTDPEKGLR---GALDKAEEIVLNTPNAYM-FQQ 236 (347)
Q Consensus 169 ~AlA~aa~~~Gl~~~I~vp~~~~~~--------~~~~l~~~GA~V~~~~~~~~~~---~a~~~a~~~a~~~~~~~~-~~~ 236 (347)
+|+|++|+.+|++|+||||++++.. |+.+++.+||+|+.++++.+.. .+.+.+.+++++.+..++ ..+
T Consensus 82 ~alA~~a~~~G~~~~iv~p~~~~~~~~~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~p~~ 161 (338)
T 1tzj_A 82 RQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADVRLVPDGFDIGFRRSWEDALESVRAAGGKPYAIPAG 161 (338)
T ss_dssp HHHHHHHHHHTCEEEEEEECCSSCCCTTTTTSHHHHHHHHTTCEEEECCC-------CHHHHHHHHHHHTTCCEEECCGG
T ss_pred HHHHHHHHHhCCceEEEecCCCCccccccccCccHHHHHhCCCEEEEeCCcchhhHHHHHHHHHHHHHhcCCceEEeCCC
Confidence 9999999999999999999988765 9999999999999998654221 246777788877644454 456
Q ss_pred -CCChHHHHHHHHHHHHHHHHhhC---CCCCEEEEecCcchHHHHHHHHHHhc-CCCCeEEEEcCCCCcccc--------
Q 019047 237 -FDNMANLKIHFDSTGPEIWEDTL---GCVDIFVAAIGTGGTITGTGRFLKMM-NKEIKVVGVEPAERSVIS-------- 303 (347)
Q Consensus 237 -~~n~~~~~~g~~ti~~Ei~~ql~---~~~D~vv~pvG~Gg~~~Gi~~~~k~~-~~~~~vigVep~~~~~~~-------- 303 (347)
|+|+.++ .||.|++.||++|+. ..+|+||+|+|+||+++|++.++|+. +++ +||+|||.+++...
T Consensus 162 ~~~n~~~~-~g~~t~~~Ei~~q~~~~~~~~d~vv~~vG~GGt~~Gi~~~~k~~g~~~-~vigve~~~~~~~~~~~~~~~~ 239 (338)
T 1tzj_A 162 CSDHPLGG-LGFVGFAEEVRAQEAELGFKFDYVVVCSVTGSTQAGMVVGFAADGRAD-RVIGVDASAKPAQTREQITRIA 239 (338)
T ss_dssp GTSSTTTT-THHHHHHHHHHHHHHHHTSCCSEEEEEESSSHHHHHHHHHHHTTTCGG-GEEEEECSSCHHHHHHHHHHHH
T ss_pred cCCCcccH-HHHHHHHHHHHHHHHhcCCCCCEEEEecCCcHHHHHHHHHHHhhCCCC-eEEEEEccCchHHHHHHHHHHH
Confidence 8999987 599999999999995 47999999999999999999999998 788 99999999874321
Q ss_pred -------CCC--CCCCchhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 304 -------GEN--AGYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 304 -------g~~--~~~~p~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
|.. .+...+.+.++.+|+++.|+|+|+++++++|+++|||++||
T Consensus 240 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~ep 292 (338)
T 1tzj_A 240 RQTAEKVGLERDIMRADVVLDERFAGPEYGLPNEGTLEAIRLCARTEGMLTDP 292 (338)
T ss_dssp HHHHHHHTCSSCCCGGGCEEECTTSCSBTTBCCHHHHHHHHHHHHHHSCCCCT
T ss_pred HHHHHHcCCCCCCCcccEEEecCcccceeecCCHHHHHHHHHHHHhcCCcccc
Confidence 111 11233456677889999999999999999999999999997
|
| >1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.79.1.1 PDB: 1k7e_B* 1k7f_B* 1kfb_B* 1k3u_B* 1tjp_B* 1wbj_B* 2cli_B* 2clk_B* 2cll_B* 2j9x_B* 3cep_B* 1kfc_B* 1k8x_B* 1kfj_B* 1kfk_B* 2rh9_B* 2rhg_B* 2j9y_B* 1cw2_B* 1a5s_B* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-45 Score=358.78 Aligned_cols=277 Identities=18% Similarity=0.201 Sum_probs=215.3
Q ss_pred CCCCCCcccchhhHHHHHHHhccCCCCchh----hhhhhccC-CCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHH
Q 019047 66 ASSSSSSLYATSTREIEKEEGNDFHGVNIA----EDVTQLIG-RTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGY 140 (347)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~-~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~ 140 (347)
....-|+...+...++.+.|....+..... ..+...++ +|||+++++|++.+|++||+|+|++|||||||+|++.
T Consensus 12 ~g~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ig~~TPL~~~~~l~~~~g~~i~lK~E~l~ptGSfK~R~a~ 91 (396)
T 1qop_B 12 GGMYVPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQNITAGTRTTLYLKREDLLHGGAHKTNQVL 91 (396)
T ss_dssp EEEESCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCSCCEEECHHHHTTSSEEEEEEEGGGSTTSBTHHHHHH
T ss_pred CCEeCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCCCCCcEEhhhhhhccCCeEEEEeccCCCCCcHHHHHHH
Confidence 333344445566678888777655443222 33455675 5999999999998899999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCC-CCH--HHHHHHHhcCCEEEEECC-CCChHH
Q 019047 141 SMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS-TNL--ERRILLRAFGAEIILTDP-EKGLRG 216 (347)
Q Consensus 141 ~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~-~~~--~~~~~l~~~GA~V~~~~~-~~~~~~ 216 (347)
+++..+++.|. ..+|+++|+||||+|+|++|+.+|++|+||||+. .+. .|+.+|+.+||+|+.++. +.++++
T Consensus 92 ~~~~~a~~~g~----~~vi~e~ssGNhg~a~A~aa~~~G~~~~i~mp~~~~~~~~~~~~~~~~~GA~V~~v~~~~~~~~~ 167 (396)
T 1qop_B 92 GQALLAKRMGK----SEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKD 167 (396)
T ss_dssp HHHHHHHHTTC----CEEEEEESSSHHHHHHHHHHHHHTCEEEEEEEHHHHHHCHHHHHHHHHTTCEEEEECSTTSSHHH
T ss_pred HHHHHHHHcCc----CEEEEecCchHHHHHHHHHHHHCCCcEEEEEcCCchhhhhhHHHHHHHCCCEEEEECCCCCCHHH
Confidence 99999998886 4545558999999999999999999999999985 333 457899999999999984 446889
Q ss_pred HHHHHHHH-HHcCCCcee-cCCCCChH----HHHHHHHHHHHHHHHhh----CCCCCEEEEecCcchHHHHHHHHHHhcC
Q 019047 217 ALDKAEEI-VLNTPNAYM-FQQFDNMA----NLKIHFDSTGPEIWEDT----LGCVDIFVAAIGTGGTITGTGRFLKMMN 286 (347)
Q Consensus 217 a~~~a~~~-a~~~~~~~~-~~~~~n~~----~~~~g~~ti~~Ei~~ql----~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~ 286 (347)
+++++.+. +++.++.+| ++++.|++ ++..||+|+|.||++|+ +..||+||+|+|+||+++|++.+++ .+
T Consensus 168 a~~~a~~~~~~~~~~~~~~~~~~~n~~p~~~~v~~g~~t~~~Ei~~Ql~~~~~~~~d~vvvpvG~GG~~~Gi~~~~~-~~ 246 (396)
T 1qop_B 168 ACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMFADFI-ND 246 (396)
T ss_dssp HHHHHHHHHHHHTTTEEECCCSSCSSTTHHHHHHHTTTHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHGGGT-TC
T ss_pred HHHHHHHHHHhccCCcEEEeCCcCCCCCchHHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHHh-cC
Confidence 99888864 555446555 45544432 33348999999999999 5579999999999999999999998 47
Q ss_pred CCCeEEEEcCCCCc---------cccCC--------------------CC------------CCCchhccccccCeEEEe
Q 019047 287 KEIKVVGVEPAERS---------VISGE--------------------NA------------GYVPSILDVQLLDEVIKV 325 (347)
Q Consensus 287 ~~~~vigVep~~~~---------~~~g~--------------------~~------------~~~p~~l~~~~vd~~v~V 325 (347)
++++||||||.++. +..|. .+ +...+.+.+..+|+++.|
T Consensus 247 ~~~~vigVe~~~~~~~~~~~~~~l~~g~~~~~~g~~~~~~~~~~g~~~~~~tia~gl~~~~~g~~~~~l~~~~~~~~~~V 326 (396)
T 1qop_B 247 TSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVSI 326 (396)
T ss_dssp TTSEEEEEEEEETBGGGTBSCCHHHHSEEEEETEEEEEECBCTTSCBCCCCCSSGGGCCSSCCHHHHHHHHTTSSEEEEE
T ss_pred CCCEEEEEeCCCccccchhhHHHHHcCCeeeeccchhhhcccccCCcCCCceeeccCCCCCCCHHHHHHHhcCCeEEEEE
Confidence 89999999998753 11221 00 111233445678999999
Q ss_pred CHHHHHHHHHHHHHhcCccccC
Q 019047 326 TNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 326 sd~ea~~a~~~La~~eGI~~G~ 347 (347)
+|+|+++++++|+++|||++||
T Consensus 327 ~d~e~~~a~~~l~~~egi~~~~ 348 (396)
T 1qop_B 327 TDDEALEAFKTLCRHEGIIPAL 348 (396)
T ss_dssp EHHHHHHHHHHHHHHHSCCBCH
T ss_pred CHHHHHHHHHHHHHhcCCcccc
Confidence 9999999999999999999763
|
| >1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural genomics/proteomics initiative, structural genomics, lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP: c.79.1.1 PDB: 1wdw_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-44 Score=355.58 Aligned_cols=278 Identities=20% Similarity=0.231 Sum_probs=213.9
Q ss_pred CCCCCCCcccchhhHHHHHHHhccCCCCc----hhhhhhhccCC-CceeeccccccCCC-CeEEEEeCCCCCCCchhHHH
Q 019047 65 AASSSSSSLYATSTREIEKEEGNDFHGVN----IAEDVTQLIGR-TPMVYLNKVTEGCV-GNVAAKLESMEPCRSVKDRI 138 (347)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~-TPLv~~~~l~~~~g-~~Iy~K~E~~~ptGSfK~Rg 138 (347)
+....-|+..++...++.+.|....+..+ ..+.+...++. |||+++++|++.+| ++||+|+|++|||||||+|+
T Consensus 6 ~gg~~~p~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~~~ig~~TPL~~~~~l~~~~g~~~i~~K~E~~~ptGSfK~R~ 85 (388)
T 1v8z_A 6 FGGQYVPETLIEPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNN 85 (388)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCSCCEEECHHHHHHHTSSEEEEEEGGGSTTSBTHHHH
T ss_pred cCCEeCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHhcCCCCCceehHhhHhhcCCceEEEEeccCCCCCCHHHHH
Confidence 34444444444455677777665544322 22334557764 99999999998886 89999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCC-C--CHHHHHHHHhcCCEEEEECC-CCCh
Q 019047 139 GYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS-T--NLERRILLRAFGAEIILTDP-EKGL 214 (347)
Q Consensus 139 a~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~-~--~~~~~~~l~~~GA~V~~~~~-~~~~ 214 (347)
+.+++..+.++|. ..+|+++|+||||+|+|++|+.+|++|+||||++ . ...|+.+++.+||+|+.++. ..++
T Consensus 86 a~~~i~~a~~~g~----~~vv~~~ssGN~g~a~A~aa~~~G~~~~iv~p~~~~~~~~~~~~~~~~~GA~V~~~~~~~~~~ 161 (388)
T 1v8z_A 86 AIGQALLAKFMGK----TRLIAETGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTL 161 (388)
T ss_dssp HHHHHHHHHHTTC----CEEEEEESSSHHHHHHHHHHHHTTCEEEEEEEHHHHTTCHHHHHHHHHTTCEEEEECSTTSSH
T ss_pred HHHHHHHHHHcCC----CEEEEecCchHHHHHHHHHHHHcCCcEEEEEcCCchhhhhhHHHHHHHCCCEEEEECCCCCCH
Confidence 9999999888885 3445569999999999999999999999999974 2 24668999999999999985 4467
Q ss_pred HHHHHHHHH-HHHcCCCcee-cCCCCChH----HHHHHHHHHHHHHHHhh----CCCCCEEEEecCcchHHHHHHHHHHh
Q 019047 215 RGALDKAEE-IVLNTPNAYM-FQQFDNMA----NLKIHFDSTGPEIWEDT----LGCVDIFVAAIGTGGTITGTGRFLKM 284 (347)
Q Consensus 215 ~~a~~~a~~-~a~~~~~~~~-~~~~~n~~----~~~~g~~ti~~Ei~~ql----~~~~D~vv~pvG~Gg~~~Gi~~~~k~ 284 (347)
+++++++.+ ++++.++.+| ++++.|++ ++..||.|++.||++|+ +..+|+||+|+|+||+++|++.++++
T Consensus 162 ~~a~~~a~~~~~~~~~~~~~~~~~~~n~~p~~~~~~~~~~t~~~Ei~~q~~~~~~~~~d~vvvpvG~GG~~aGi~~~~~~ 241 (388)
T 1v8z_A 162 KDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFVN 241 (388)
T ss_dssp HHHHHHHHHHHHHHTTTEEECCCSSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHGGGTT
T ss_pred HHHHHHHHHHHHHhCCCceEecCCccCCCCchhHHHHHhHHHHHHHHHHHHHhcCCCCCEEEEecCccHhHHHHHHHHhh
Confidence 889888865 5666555444 56665543 23348999999999999 45699999999999999999988874
Q ss_pred cCCCCeEEEEcCCCCcc---------ccCC--------------------C------------CCCCchhccccccCeEE
Q 019047 285 MNKEIKVVGVEPAERSV---------ISGE--------------------N------------AGYVPSILDVQLLDEVI 323 (347)
Q Consensus 285 ~~~~~~vigVep~~~~~---------~~g~--------------------~------------~~~~p~~l~~~~vd~~v 323 (347)
.++++||||||.++.. ..|. . .+...+.+....+|+++
T Consensus 242 -~~~~~vigve~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~tia~gl~~~~~g~~~~~~~~~~~~~~~ 320 (388)
T 1v8z_A 242 -DKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYV 320 (388)
T ss_dssp -CTTSEEEEEEEEETBGGGTBSCCHHHHCEEEEETTEEEEECBCTTSCBCCCCCSSTTSCCSBCCHHHHHHHHTTSEEEE
T ss_pred -CCCceEEEEccCccccchhhhhHHHhcCCceeccccccccccccccccCCCceeeeccccCCCChhHHHHHhcCCcEEE
Confidence 7899999999987532 1110 0 01111334456679999
Q ss_pred EeCHHHHHHHHHHHHHhcCccccC
Q 019047 324 KVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 324 ~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.|+|+|+++++++|+++|||++||
T Consensus 321 ~V~d~e~~~a~~~l~~~egi~~~~ 344 (388)
T 1v8z_A 321 TVTDEEALKAFHELSRTEGIIPAL 344 (388)
T ss_dssp EEEHHHHHHHHHHHHHHHSCCBCH
T ss_pred EECHHHHHHHHHHHHHhcCCeecc
Confidence 999999999999999999999874
|
| >1x1q_A Tryptophan synthase beta chain; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-44 Score=359.08 Aligned_cols=282 Identities=20% Similarity=0.209 Sum_probs=215.4
Q ss_pred ccCCCCCCCCcccchhhHHHHHHHhccCCCCc----hhhhhhhcc-CCCceeeccccccCC-CCeEEEEeCCCCCCCchh
Q 019047 62 AGAAASSSSSSLYATSTREIEKEEGNDFHGVN----IAEDVTQLI-GRTPMVYLNKVTEGC-VGNVAAKLESMEPCRSVK 135 (347)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~-~~TPLv~~~~l~~~~-g~~Iy~K~E~~~ptGSfK 135 (347)
-.++....-|+...+...++.+.|...-+.+. ..+.+...+ .+|||+++++|++.+ |++||+|+|++|||||||
T Consensus 30 ~~~~gg~~~p~~~~~~~~~i~~A~~~~~~~~~~~~~~~~~~~~~ig~~TPL~~~~~Ls~~~gg~~i~lK~E~l~ptGSfK 109 (418)
T 1x1q_A 30 FGPYGGRYVPETLIPALEELEAAYREAKKDPAFLEELDHYLRQFAGRPTPLYHAKRLSEYWGGAQVFLKREDLLHTGAHK 109 (418)
T ss_dssp ETTEECCCCCTTTHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTCCSCCEEECHHHHHHHTSSEEEEEEGGGSGGGBTT
T ss_pred cCCcCCEECCchhhhhHHHHHHHHHHHhhChHHHHHHHHhhhcccCCCCCcEEhHHhHhhcCCceEEEEEccCCcCccHH
Confidence 34455556665555566777776654332111 112233456 469999999999887 589999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCC---CHHHHHHHHhcCCEEEEECC-C
Q 019047 136 DRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST---NLERRILLRAFGAEIILTDP-E 211 (347)
Q Consensus 136 ~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~---~~~~~~~l~~~GA~V~~~~~-~ 211 (347)
+|++.+++..+++.|+ +.+|+++|+||||+|+|++|+.+|++|+||||++. ...|+.+|+.+||+|+.++. +
T Consensus 110 ~R~a~~~i~~a~~~g~----~~vI~~~ssGNhg~avA~aaa~~Gi~~~I~mp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~ 185 (418)
T 1x1q_A 110 INNTLGQALLARRMGK----RRVIAETGAGQHGVSVATVAALFGLECVVYMGEEDVRRQALNVFRMKLLGAEVRPVAAGS 185 (418)
T ss_dssp HHHHHHHHHHHHHHTC----CEEEEECSSSHHHHHHHHHHHHHTCEEEEEEEHHHHHTCHHHHHHHHHTTCEEEEECSTT
T ss_pred HHHHHHHHHHHHHcCC----CEEEEecCchHHHHHHHHHHHHcCCCEEEEECCCcchhhhHHHHHHHHCCCEEEEECCCC
Confidence 9999999999888885 45566799999999999999999999999999752 23678899999999999984 3
Q ss_pred CChHHHHHHHHH-HHHcCCCceec-CCCCChH----HHHHHHHHHHHHHHHhh----CCCCCEEEEecCcchHHHHHHHH
Q 019047 212 KGLRGALDKAEE-IVLNTPNAYMF-QQFDNMA----NLKIHFDSTGPEIWEDT----LGCVDIFVAAIGTGGTITGTGRF 281 (347)
Q Consensus 212 ~~~~~a~~~a~~-~a~~~~~~~~~-~~~~n~~----~~~~g~~ti~~Ei~~ql----~~~~D~vv~pvG~Gg~~~Gi~~~ 281 (347)
.+++++++++.+ ++++.++.+|+ +++.|++ .+..||.|++.||++|+ +..||+||+|+|+||+++|++.+
T Consensus 186 ~~~~~a~~~a~~~~~~~~~~~~~i~~~~~n~~p~~~~v~~gq~t~~~Ei~~Ql~~~~~~~~D~vvvpvGgGG~~~Gi~~~ 265 (418)
T 1x1q_A 186 RTLKDATNEAIRDWITNVRTTFYILGSVVGPHPYPMMVRDFQSVIGEEVKRQSLELFGRLPDALIAAVGGGSNAIGLFAP 265 (418)
T ss_dssp SSHHHHHHHHHHHHHHTTTTEEECCCCSSSSTTHHHHHHHHHTHHHHHHHHHHHHHHSSCCSEEEEECSSSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcEEEeCCccCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCCCEEEEecCCcHhHHHHHHH
Confidence 468899988865 46655455554 5544432 23349999999999998 34599999999999999999999
Q ss_pred HHhc-CCCCeEEEEcCCCCcc---------ccCCC--------------------------------CCCCchhcccccc
Q 019047 282 LKMM-NKEIKVVGVEPAERSV---------ISGEN--------------------------------AGYVPSILDVQLL 319 (347)
Q Consensus 282 ~k~~-~~~~~vigVep~~~~~---------~~g~~--------------------------------~~~~p~~l~~~~v 319 (347)
+|+. +++++||||||.++.. ..|.. ++...+.+.+..+
T Consensus 266 ~k~l~~p~~~vigVe~~g~~~~~~~~~~~l~~G~~~~~~g~~~~~~~~~~g~~~~~~tia~gl~~~~~g~~~~~l~~~~~ 345 (418)
T 1x1q_A 266 FAYLPEGRPKLIGVEAAGEGLSTGRHAASIGAGKRGVLHGSYMYLLYDHDGQITPAHSVSAGLDYPGVGPEHSYYADAGV 345 (418)
T ss_dssp HHTSCTTCCEEEEEEECCTTSSSCHHHHHHHHTCEEEETTEEEEBCCC----------------CSBCCHHHHHHHHHTS
T ss_pred HHHhCCCCCeEEEEecCCcccccHHHHHHHHcCCeeeeccccccccccccccccCCceeeeccCCCCCCHHHHHHHhccC
Confidence 9987 8899999999998621 11210 0111123445567
Q ss_pred CeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 320 DEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 320 d~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
|++++|+|+|+.++++.|+++|||+++|
T Consensus 346 ~~~~~Vsd~e~~~a~~~l~~~egi~~~~ 373 (418)
T 1x1q_A 346 AEYASVTDEEALEGFKLLARLEGIIPAL 373 (418)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHSCCBCH
T ss_pred eEEEEECHHHHHHHHHHHHHhcCCcccc
Confidence 8999999999999999999999999764
|
| >2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan biosynthesis, structural genomics; 2.20A {Mycobacterium tuberculosis} PDB: 2o2j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-44 Score=353.27 Aligned_cols=278 Identities=18% Similarity=0.189 Sum_probs=208.1
Q ss_pred CCCCCCCcccchhhHHHHHHHhccCCCCchhhhh----hhcc-CCCceeeccccccCCC-CeEEEEeCCCCCCCchhHHH
Q 019047 65 AASSSSSSLYATSTREIEKEEGNDFHGVNIAEDV----TQLI-GRTPMVYLNKVTEGCV-GNVAAKLESMEPCRSVKDRI 138 (347)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v----~~~~-~~TPLv~~~~l~~~~g-~~Iy~K~E~~~ptGSfK~Rg 138 (347)
+....-|+...+...+|.+.|....+..+..+++ ...+ .+|||+++++|++.+| ++||+|+|++|||||||+|+
T Consensus 37 ~gg~~~pe~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~g~~TPL~~~~~Ls~~~gg~~i~lK~E~lnptGSfK~R~ 116 (422)
T 2o2e_A 37 WGGRYVPEALMAVIEEVTAAYQKERVSQDFLDDLDRLQANYAGRPSPLYEATRLSQHAGSARIFLKREDLNHTGSHKINN 116 (422)
T ss_dssp ----CCCGGGHHHHHHHHHHHHHHHTSTHHHHHHHHHTTTTSSCSCCEEECGGGGGGTTTCEEEEECGGGCCSSTTHHHH
T ss_pred cCCccCCHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCeEEChhhHhhcCCCeEEEEEcCCCCCCcHHHHH
Confidence 6666666665566678888887765544333332 3345 4599999999999884 79999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCC---CHHHHHHHHhcCCEEEEECC-CCCh
Q 019047 139 GYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST---NLERRILLRAFGAEIILTDP-EKGL 214 (347)
Q Consensus 139 a~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~---~~~~~~~l~~~GA~V~~~~~-~~~~ 214 (347)
+.+++..+++.|+ +.+|+++|+||||+|+|++|+.+|++|+||||+.. ...|+.+|+.+||+|+.++. +.++
T Consensus 117 a~~~~~~a~~~g~----~~vI~~~ssGNhG~A~A~aaa~~G~~~~I~mp~~~~~~q~~kv~~~~~~GA~Vv~v~~~~~~~ 192 (422)
T 2o2e_A 117 VLGQALLARRMGK----TRVIAETGAGQHGVATATACALLGLDCVIYMGGIDTARQALNVARMRLLGAEVVAVQTGSKTL 192 (422)
T ss_dssp HHHHHHHHHHTTC----CEEEEEESSSHHHHHHHHHHHHHTCEEEEEEEHHHHHHSHHHHHHHHHTTCEEEEECSTTSCH
T ss_pred HHHHHHHHHHcCC----CeEEEecCccHHHHHHHHHHHHcCCcEEEEeCCCcchhhHHHHHHHHHCCCEEEEECCCCCCH
Confidence 9999999998886 45667899999999999999999999999999852 24677899999999999984 4478
Q ss_pred HHHHHHHHH-HHHcCCCceec-CCCCC----hHHHHHHHHHHHHHHHHhh----CCCCCEEEEecCcchHHHHHHHHHHh
Q 019047 215 RGALDKAEE-IVLNTPNAYMF-QQFDN----MANLKIHFDSTGPEIWEDT----LGCVDIFVAAIGTGGTITGTGRFLKM 284 (347)
Q Consensus 215 ~~a~~~a~~-~a~~~~~~~~~-~~~~n----~~~~~~g~~ti~~Ei~~ql----~~~~D~vv~pvG~Gg~~~Gi~~~~k~ 284 (347)
++++.++.+ ++++.++.+|+ +++.| +.++..||.|++.||++|+ +..||+||+|+|+||+++|++.+++.
T Consensus 193 ~da~~~a~~~~~~~~~~~~yi~~s~~g~~p~~~~v~~~q~t~g~Ei~~Ql~~~~~~~pD~vvvpvG~GG~~~Gi~~~~~~ 272 (422)
T 2o2e_A 193 KDAINEAFRDWVANADNTYYCFGTAAGPHPFPTMVRDFQRIIGMEARVQIQGQAGRLPDAVVACVGGGSNAIGIFHAFLD 272 (422)
T ss_dssp HHHHHHHHHHHHHHTTTEEECCCCSSSCCCCHHHHHHHTTHHHHHHHHHHHHHSSSCCSEEEEEGGGHHHHHTTSGGGTT
T ss_pred HHHHHHHHHHHHhcCCCcEEEeCCccCCCCcHHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEccCCchhHHHHHHHHhc
Confidence 899988865 56654565554 44432 2344458999999999998 34699999999999999999777754
Q ss_pred cCCCCeEEEEcCCCCc---------cccCCC--------------------------------CCCCchhccccccCeEE
Q 019047 285 MNKEIKVVGVEPAERS---------VISGEN--------------------------------AGYVPSILDVQLLDEVI 323 (347)
Q Consensus 285 ~~~~~~vigVep~~~~---------~~~g~~--------------------------------~~~~p~~l~~~~vd~~v 323 (347)
.++++||||||.++. +..|.. ++...+.+....+|+++
T Consensus 273 -~p~v~vigVe~~g~~~~~~~~~~~l~~g~~~~~~g~~~~~~~~~~g~~~~~~tia~gl~~~~~g~~~~~l~~~~~~~~~ 351 (422)
T 2o2e_A 273 -DPGVRLVGFEAAGDGVETGRHAATFTAGSPGAFHGSFSYLLQDEDGQTIESHSISAGLDYPGVGPEHAWLKEAGRVDYR 351 (422)
T ss_dssp -CTTCEEEEEEECC-------------------------------------------------------------CCEEE
T ss_pred -CCCCeEEEEecCCCcccchhHHHHHHcCCceeccccchhhcccccccccCCceeecccCCCCCCHHHHHHHHhCCeeEE
Confidence 788999999999752 111200 01111234456678999
Q ss_pred EeCHHHHHHHHHHHHHhcCccccC
Q 019047 324 KVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 324 ~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
+|+|+|+++++++|+++|||+++|
T Consensus 352 ~Vsd~e~~~a~~~l~~~eGi~~~~ 375 (422)
T 2o2e_A 352 PITDSEAMDAFGLLCRMEGIIPAI 375 (422)
T ss_dssp EECHHHHHHHHHHHHHHHCCCCCH
T ss_pred EECHHHHHHHHHHHHHHcCCccCc
Confidence 999999999999999999999753
|
| >1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme, S-adenosyl-methionine, allostery; 2.25A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-43 Score=357.12 Aligned_cols=258 Identities=17% Similarity=0.166 Sum_probs=211.5
Q ss_pred HHHHHHhccC-CCCchhhhhhhccCCCceeeccccccC-CC-CeEEEEeCCCCCCCchhHHHHHHHHHHHHH---cCCCC
Q 019047 80 EIEKEEGNDF-HGVNIAEDVTQLIGRTPMVYLNKVTEG-CV-GNVAAKLESMEPCRSVKDRIGYSMITDAEE---SGDIT 153 (347)
Q Consensus 80 ~~~~~~~~~~-~~~~~~~~v~~~~~~TPLv~~~~l~~~-~g-~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~---~G~~~ 153 (347)
++| .|++++ |.....+.+..++++|||+++++|++. +| .+||+|+|++|||||||||++.+++..+.+ +|.
T Consensus 106 ~i~-~y~e~l~p~~~~~~iv~l~~g~TPLv~l~~L~~~~lg~~~l~~K~E~~nPTGSFKDRga~~~~~~l~~~~~~~~-- 182 (486)
T 1e5x_A 106 GVW-SKKEWVLPEIDDDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKR-- 182 (486)
T ss_dssp TTG-GGGGGTCTTCCGGGCCCCCCCCCCEEECHHHHHHHHCCSSEEEEETTSSTTSBTTHHHHHHHHHHHHHHHHTTC--
T ss_pred cce-eHHhhcCCcccccccccccCCCCCcEECcccchhhcCCCcEEEeeccCCCccCHHHHHHHHHHHHHHHHHHcCC--
Confidence 455 467766 765444556778999999999999887 77 489999999999999999999988776654 331
Q ss_pred CCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCC-CCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCce
Q 019047 154 PGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS-TNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAY 232 (347)
Q Consensus 154 ~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~-~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~ 232 (347)
+..+|+++|+||||.|+|++|+.+|++|+||||++ ++..|+.+|+.+||+|+.++++ ++++.+.+.+++++. +.+
T Consensus 183 -g~~~Vv~aSsGNtG~AlA~~a~~~Gi~~~I~~P~~~~s~~k~~~~~~~GA~vi~v~g~--~dd~~~~a~~l~~~~-~~~ 258 (486)
T 1e5x_A 183 -PVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSIDTD--FDGCMKLIREITAEL-PIY 258 (486)
T ss_dssp -CCCEEEECCCSHHHHHHHHHHHHHTCCEEEEEEGGGCCHHHHHHHHHTTCEEEEEESC--HHHHHHHHHHHHHHS-CEE
T ss_pred -CCeEEEEcCCCHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHhCCCEEEEECCC--HHHHHHHHHHHHhcC-CEE
Confidence 23568999999999999999999999999999996 9999999999999999999864 789999999998886 688
Q ss_pred ecCCCCChHHHHHHHHHHHHHHHHhhCC-CCCEEEEecCcchHHHHHHHHHHhcC------CCCeEEEEcCCCCccc---
Q 019047 233 MFQQFDNMANLKIHFDSTGPEIWEDTLG-CVDIFVAAIGTGGTITGTGRFLKMMN------KEIKVVGVEPAERSVI--- 302 (347)
Q Consensus 233 ~~~~~~n~~~~~~g~~ti~~Ei~~ql~~-~~D~vv~pvG~Gg~~~Gi~~~~k~~~------~~~~vigVep~~~~~~--- 302 (347)
+++++ |+.++ .||.|+++||++|+++ .+|+||+|+|+||+++|++.+||+.. +.++||+|||.+++.+
T Consensus 259 ~vns~-N~~~i-~gq~t~~~Ei~~ql~~~~~D~vvvpvG~GG~i~Gi~~a~k~~~~~Gli~p~~rvi~Ve~~~~~~l~~~ 336 (486)
T 1e5x_A 259 LANSL-NSLRL-EGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIYAFYKGFKXCQELGLVDRIPRMVCAQAANANPLYLH 336 (486)
T ss_dssp EGGGS-HHHHH-HHHTHHHHHHHHHTTSCCCSEEEEECSSTHHHHHHHHHHHHHHHTTSSSCCCEEEEEEETTSSTHHHH
T ss_pred EeCCC-CHHHH-HHHHHHHHHHHHHcCCCCCCEEEEeCCcHHHHHHHHHHHHHhhhhccCCCCCEEEEEecCCCchHHHH
Confidence 88887 88887 5999999999999965 59999999999999999999998753 7899999999976433
Q ss_pred --cCC---CC----CC--------Cchhc--cccccCe----EEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 303 --SGE---NA----GY--------VPSIL--DVQLLDE----VIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 303 --~g~---~~----~~--------~p~~l--~~~~vd~----~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
+|. .+ .. .|..+ ..+.+|+ ++.|+|+|+.++++ +++++||+++|
T Consensus 337 ~~~G~~~~~~~~~~~t~a~gi~i~~p~~~~~~~~~~~~~~g~~~~Vsd~e~~~ai~-l~~~eGi~~eP 403 (486)
T 1e5x_A 337 YKSGWKDFKPMTASTTFASAIQIGDPVSIDRAVYALKKCNGIVEEATEEELMDAMA-QADSTGMFICP 403 (486)
T ss_dssp HHTTTTTCCC----------------CCCHHHHHHHHHTTCEEEEECHHHHHHHHH-HHHHTTCCCCH
T ss_pred HHcCCCccccCCCCCeeCccccCCCCccHHHHHHHHhccCCeEEEECHHHHHHHHH-HHHHCCeEECh
Confidence 231 00 00 11111 1224555 99999999999999 77889999986
|
| >1vb3_A Threonine synthase; PLP-dependent enzyme, lyase; HET: KPA; 2.20A {Escherichia coli} SCOP: c.79.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-37 Score=304.00 Aligned_cols=227 Identities=15% Similarity=0.124 Sum_probs=181.4
Q ss_pred CCCceeeccccccCCCCeEEEEeCCC-CCCCchhHHHHHHHH---HHHHHcCCCCCCCeEEEEeCCChhHHHHH-HHHHH
Q 019047 103 GRTPMVYLNKVTEGCVGNVAAKLESM-EPCRSVKDRIGYSMI---TDAEESGDITPGKTVLVEPTTGNTGLGIA-FVAAV 177 (347)
Q Consensus 103 ~~TPLv~~~~l~~~~g~~Iy~K~E~~-~ptGSfK~Rga~~~~---~~a~~~G~~~~g~~~vv~assGN~g~AlA-~aa~~ 177 (347)
++|||+++++ +||+ +|.+ |||||||||++.+++ .++ +++. ..+|+++|+||||.|+| .+|+.
T Consensus 82 ~~TPL~~l~~-------~i~~-~E~~~~pTgSfKdr~a~~l~~~l~~a-~~~~----~~~Iv~atsGNtG~A~A~~~a~~ 148 (428)
T 1vb3_A 82 FPAPVANVES-------DVGC-LELFHGPTLAFKDFGGRFMAQMLTHI-AGDK----PVTILTATSGDTGAAVAHAFYGL 148 (428)
T ss_dssp SCCCEEEEET-------TEEE-EECCCSTTSBTHHHHHHHHHHHHHHH-TTTC----CEEEEEECSSSHHHHHHHHTTTC
T ss_pred CCCCeEEecC-------CeEE-eeccCCCcccHHHHHHHHHHHHHHHH-HhcC----CCEEEecCCchHHHHHHHHHhhh
Confidence 6799999864 6999 6777 699999999999874 444 2332 47799999999999999 59999
Q ss_pred cCCcEEEEeCC-CCCHHHHHHHHhcCCEE--EEECCCCChHHHHHHHHHHHHc-----CCCceecCCCCChHHHHHHHHH
Q 019047 178 KGYKLIVTMPA-STNLERRILLRAFGAEI--ILTDPEKGLRGALDKAEEIVLN-----TPNAYMFQQFDNMANLKIHFDS 249 (347)
Q Consensus 178 ~Gl~~~I~vp~-~~~~~~~~~l~~~GA~V--~~~~~~~~~~~a~~~a~~~a~~-----~~~~~~~~~~~n~~~~~~g~~t 249 (347)
+|++|+||||+ +++..|+.+|+.+||+| +.+++ +++++.+.+.+++++ ..++++++++ |+.++ .||.|
T Consensus 149 ~G~~~~I~~P~~~~s~~k~~~m~~~GA~V~~v~v~g--~~d~~~~~~~~~~~d~~~~~~~~~~~~n~~-n~~~~-~gq~t 224 (428)
T 1vb3_A 149 PNVKVVILYPRGKISPLQEKLFCTLGGNIETVAIDG--DFDACQALVKQAFDDEELKVALGLNSANSI-NISRL-LAQIC 224 (428)
T ss_dssp TTEEEEEEEETTCSCHHHHHHHHSCCTTEEEEEEES--CHHHHHHHHHHGGGCHHHHHHHTEECCSTT-SHHHH-HHTTH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhcCCeEEEEEeCC--CHHHHHHHHHHHHhchhhhhhcCeeeCCCC-CHHHH-HHHHH
Confidence 99999999999 59999999999999999 66654 578888888877653 1256666764 68776 69999
Q ss_pred HHHHHHHhhCC---CCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCcc----ccCCC----------CC---C
Q 019047 250 TGPEIWEDTLG---CVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSV----ISGEN----------AG---Y 309 (347)
Q Consensus 250 i~~Ei~~ql~~---~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~----~~g~~----------~~---~ 309 (347)
++.||++|+.+ .+|+||+|+|+|||++|++.+++...|.++||+|++.+..+ .+|.. ++ .
T Consensus 225 ~~~Ei~~ql~~~g~~~d~vvvpvG~GG~i~G~~~a~~~g~p~~kii~a~~~~~~l~~~~~~G~~~~~~~~~tis~g~~i~ 304 (428)
T 1vb3_A 225 YYFEAVAQLPQETRNQLVVSVPSGNFGDLTAGLLAKSLGLPVKRFIAATNVNDTVPRFLHDGQWSPKATQATLSNAMDVS 304 (428)
T ss_dssp HHHHHHTTSCTTTTTSEEEEEECSSCHHHHHHHHHHHTTCCCSEEEEEECSCCHHHHHHHHSCCCCCCCCCCSSGGGCCS
T ss_pred HHHHHHHHcccccCCCCEEEEeCCchHHHHHHHHHHHcCCCCCeEEeecCCChHHHHHHHcCCcccCCCCCcccchhcCC
Confidence 99999999964 59999999999999999999998877878999999876311 22311 01 0
Q ss_pred Cchhc------cccc-----cCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 310 VPSIL------DVQL-----LDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 310 ~p~~l------~~~~-----vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.|.++ ..+. .++++.|+|+|+.+++++| ++|||+++|
T Consensus 305 ~p~~~~~~~~l~~~~~~~~~~~~~~~Vsd~e~~~a~~~l-~~eGi~~~p 352 (428)
T 1vb3_A 305 QPNNWPRVEELFRRKIWQLKELGYAAVDDETTQQTMREL-KELGYTSEP 352 (428)
T ss_dssp SCTTHHHHHHHHHHTTCCGGGSEEEECCHHHHHHHHHHH-HHTTCCCCH
T ss_pred CCccHHHHHHHHhcchhhhhCcEEEEECHHHHHHHHHHH-HHCCeEECc
Confidence 12221 1222 6799999999999999999 999999986
|
| >1kl7_A Threonine synthase; threonine synthesis, pyridoxal 5-phosphate, beta-family, MON lyase; HET: PLP; 2.70A {Saccharomyces cerevisiae} SCOP: c.79.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-34 Score=287.02 Aligned_cols=256 Identities=14% Similarity=0.050 Sum_probs=187.2
Q ss_pred HHHHHh--ccCCCCchhhhhh---h---ccCCCceee--ccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHH---HHH
Q 019047 81 IEKEEG--NDFHGVNIAEDVT---Q---LIGRTPMVY--LNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMIT---DAE 147 (347)
Q Consensus 81 ~~~~~~--~~~~~~~~~~~v~---~---~~~~TPLv~--~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~---~a~ 147 (347)
+...|. ..+|..+....+. . ..+.|||++ ++++ .+||+|.|++|||||||||++..++. +++
T Consensus 65 ~l~~f~~~~~ip~~~l~~~v~~ay~~f~~~g~TPLv~~~l~~l-----~~l~~K~e~~nPTgSFKDrga~~~~~~~~~a~ 139 (514)
T 1kl7_A 65 IMRLYIAQEEIPDADLKDLIKRSYSTFRSDEVTPLVQNVTGDK-----ENLHILELFHGPTYAFKDVALQFVGNLFEYFL 139 (514)
T ss_dssp HHHTTSCTTTSCHHHHHHHHHHHTTTCSSTTSSCEECCTTCSS-----SCEEEEECCCSTTSBTHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCcccCCHHHHHHHHHHHhhccCCCCCCceeehhcccc-----cchhhhhhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 444565 5555533223333 1 367799999 8765 47999999999999999999999854 443
Q ss_pred -HcCC-----CCCCCeEEEEeCCChhHHHHHHHH--HHcCCcEEEEeCCC-CCHHHHHHHH---hcCCEEEEECCCCChH
Q 019047 148 -ESGD-----ITPGKTVLVEPTTGNTGLGIAFVA--AVKGYKLIVTMPAS-TNLERRILLR---AFGAEIILTDPEKGLR 215 (347)
Q Consensus 148 -~~G~-----~~~g~~~vv~assGN~g~AlA~aa--~~~Gl~~~I~vp~~-~~~~~~~~l~---~~GA~V~~~~~~~~~~ 215 (347)
++|. +++ ..+|+++|+||||.| |.+| +..|++|+||||++ +++.++.+|. .+|++|+.+++ +++
T Consensus 140 ~~~g~~~~~~~~~-~~~Iv~ATSGNtG~A-A~~a~a~~~Gi~~~I~~P~~~~S~~q~~qm~~~~g~~~~vv~v~g--~fd 215 (514)
T 1kl7_A 140 QRTNANLPEGEKK-QITVVGATSGDTGSA-AIYGLRGKKDVSVFILYPTGRISPIQEEQMTTVPDENVQTLSVTG--TFD 215 (514)
T ss_dssp HHHHTTSCSSSCC-CEEEEEECSSSHHHH-HHHHHTTCTTEEEEEEEETTSSCHHHHHHHHHCCCTTEEEEEESS--CHH
T ss_pred HhcCCccccccCC-CCEEEECCCCcHHHH-HHHHHHhhcCCeEEEEEcCCCCCHHHHHHHhhhcCCCEEEEEcCC--CHH
Confidence 3452 333 367999999999999 6666 88999999999997 9998877773 44556666664 689
Q ss_pred HHHHHHHHHHHcCC-----CceecCCCCChHHHHHHHHHHHHHHHHhh-C---CCCCEEEEecCcchHHHHHHHHHHhcC
Q 019047 216 GALDKAEEIVLNTP-----NAYMFQQFDNMANLKIHFDSTGPEIWEDT-L---GCVDIFVAAIGTGGTITGTGRFLKMMN 286 (347)
Q Consensus 216 ~a~~~a~~~a~~~~-----~~~~~~~~~n~~~~~~g~~ti~~Ei~~ql-~---~~~D~vv~pvG~Gg~~~Gi~~~~k~~~ 286 (347)
++.+.+.+++++.+ +.++.+++ |+..+ .||.|+++|+++|+ + +.+|+||+|+|+||++.|++...+...
T Consensus 216 da~~~vk~l~~~~~~~~~~~~~~~Ns~-N~~ri-~gQ~tyy~e~~~ql~~~~~~~~d~~vvP~GngG~i~a~~~ak~~G~ 293 (514)
T 1kl7_A 216 NCQDIVKAIFGDKEFNSKHNVGAVNSI-NWARI-LAQMTYYFYSFFQATNGKDSKKVKFVVPSGNFGDILAGYFAKKMGL 293 (514)
T ss_dssp HHHHHHHHHHHCSSCC--CCBCCCCSC-CHHHH-HHHHHHHHHHHHHHHSSSSCCCEEEEEECSSSHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcccccccceeEeeCCC-CHhHH-hhHHHHHHHHHHHHhhhcCCCCcEEEEECCchHHHHHHHHHHHcCC
Confidence 99999999988743 33444443 66665 59999999999998 4 368999999999999999886444446
Q ss_pred CCCeEEEEcCCCCccc----cCC----C-------C---CCCchhccc---cccC-------------------------
Q 019047 287 KEIKVVGVEPAERSVI----SGE----N-------A---GYVPSILDV---QLLD------------------------- 320 (347)
Q Consensus 287 ~~~~vigVep~~~~~~----~g~----~-------~---~~~p~~l~~---~~vd------------------------- 320 (347)
|.+|+|+|||++..+. +|. . + -..|.++.+ ..+|
T Consensus 294 p~~rli~v~~~n~~l~~~~~~G~~~~~~~~~~Tis~amdi~~psn~er~l~~l~~~~~~~~~~~~d~~~v~~~~~~l~~~ 373 (514)
T 1kl7_A 294 PIEKLAIATNENDILDRFLKSGLYERSDKVAATLSPAMDILISSNFERLLWYLAREYLANGDDLKAGEIVNNWFQELKTN 373 (514)
T ss_dssp CCCCEEEEECSCCHHHHHHHHSEEECCSSCCCCSCGGGCCSSCTTHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCcchHHHHHhcCCccCCCCCCCeechhhhcCCCCcHHHHHHHHhccccccccccccHHHHHHHHHHHHhc
Confidence 7789999999874322 220 0 0 022322221 1122
Q ss_pred -----------------eEEEeCHHHHHHHHHHHHHhc----CccccC
Q 019047 321 -----------------EVIKVTNDEAVNMARRLALEE----GLLVMC 347 (347)
Q Consensus 321 -----------------~~v~Vsd~ea~~a~~~La~~e----GI~~G~ 347 (347)
+++.|+|+|+.+++++|++++ |++++|
T Consensus 374 gg~~~~~~~~~~~~~~f~~~~Vsd~e~~~ai~~l~~~~~~~~G~~~ep 421 (514)
T 1kl7_A 374 GKFQVDKSIIEGASKDFTSERVSNEETSETIKKIYESSVNPKHYILDP 421 (514)
T ss_dssp SEEECCHHHHHHHTTTEEEEECCHHHHHHHHHHHHHHCCSSTTCCCCH
T ss_pred CCeeccHHHHHHhhcCceEEEECHHHHHHHHHHHHHhCCCCCCEEEcc
Confidence 489999999999999999999 999986
|
| >4f4f_A Threonine synthase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.90A {Brucella melitensis BV} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-33 Score=279.34 Aligned_cols=226 Identities=14% Similarity=0.113 Sum_probs=175.5
Q ss_pred CceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHH---HHHHH-HcCCCCCCCeEEEEeCCChhHHH-HHHHHHHcC
Q 019047 105 TPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSM---ITDAE-ESGDITPGKTVLVEPTTGNTGLG-IAFVAAVKG 179 (347)
Q Consensus 105 TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~---~~~a~-~~G~~~~g~~~vv~assGN~g~A-lA~aa~~~G 179 (347)
|||+++.. ++|+|.|++|||||||||++.++ +.++. +.|. ..+|+++|+||||.+ +|.+|+.+|
T Consensus 94 ~pl~~l~~-------~~~~kee~~~PTgSFKDRga~~~~~~l~~a~~~~g~----~~~Vv~ASSGNtG~aa~aa~a~~~G 162 (468)
T 4f4f_A 94 CPLVQTDA-------NEFVLELFHGPTLAFKDVAMQLLARMMDYVLAQRGE----RATIVGATSGDTGGAAIEAFGGRDN 162 (468)
T ss_dssp SCEEEEET-------TEEEEECCCSTTSBTHHHHHHHHHHHHHHHHHHTTC----CEEEEEECSSHHHHHHHHHHTTCSS
T ss_pred CceEEecC-------CeehHHhccCCcccHHHHHHHHHHHHHHHHHHhcCC----CcEEEEECCchHHHHHHHHHHhccC
Confidence 99998742 69999999999999999999999 66664 5664 457999999999955 566688999
Q ss_pred CcEEEEeCCC-CCHHHHHHHHhcC-CEE--EEECCCCChHHHHHHHHHHHHcCC-----CceecCCCCChHHHHHHHHHH
Q 019047 180 YKLIVTMPAS-TNLERRILLRAFG-AEI--ILTDPEKGLRGALDKAEEIVLNTP-----NAYMFQQFDNMANLKIHFDST 250 (347)
Q Consensus 180 l~~~I~vp~~-~~~~~~~~l~~~G-A~V--~~~~~~~~~~~a~~~a~~~a~~~~-----~~~~~~~~~n~~~~~~g~~ti 250 (347)
++|+||||++ +++.|+.+|+.+| ++| +.+++ +++++.+.+.+++++.+ +.+++++ .|+..+ .||.|+
T Consensus 163 i~~~I~~P~~~~s~~k~~~~~~~gganV~vv~v~g--~fdda~~~~k~~~~d~~~~~~~~~~~vns-in~~ri-~GQ~T~ 238 (468)
T 4f4f_A 163 TDIFILFPNGRVSPVQQRQMTSSGFSNVHALSIEG--NFDDCQNLVKGMFNDLEFCDALSLSGVNS-INWARI-MPQVVY 238 (468)
T ss_dssp EEEEEEEETTCSCHHHHHHHHCSCCTTEEEEEEES--CHHHHHHHHHHHHHCHHHHHHHTEEECCT-TSHHHH-GGGHHH
T ss_pred CcEEEEeCCCCCCHHHHHHHHhcCCCeEEEeecCC--CHHHHHHHHHHHHhccccccccceEeCCC-CCHHHH-HhHHHH
Confidence 9999999998 9999999999997 565 55664 58999999988887642 3555665 578776 699999
Q ss_pred HHHHHHhhCCCCCE---EEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccc-----cCCC-----CC--------C
Q 019047 251 GPEIWEDTLGCVDI---FVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVI-----SGEN-----AG--------Y 309 (347)
Q Consensus 251 ~~Ei~~ql~~~~D~---vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~-----~g~~-----~~--------~ 309 (347)
++||++|+. .+|. ||+|+|+||+++|++.+.+...|..|+|+| +..++.+ +|.. .. .
T Consensus 239 ~~Ei~~ql~-~~d~~v~vvVPvG~GG~i~g~~~Ak~mGlPi~kli~a-~n~~~~l~~~l~~G~~~~~~~~~Tia~smdi~ 316 (468)
T 4f4f_A 239 YFTAALSLG-APDRAVSFTVPTGNFGDIFAGYVAKRMGLPIEQLIIA-TNDNDILSRTLESGAYEMRGVAQTTSPSMDIQ 316 (468)
T ss_dssp HHHHHHHTT-TTSSCEEEEEECSSSHHHHHHHHHHHHTCCEEEEEEE-ECSCCHHHHHHHHSEEECCCCCCCSCGGGCCS
T ss_pred HHHHHHhcc-cCCCCeEEEEEeCCcHHHHHHHHHHHhCCCCCEEEEE-eCCchHHHHHHHcCCceecCCcceeCchhhcC
Confidence 999999995 7888 999999999999988774443466799999 6665332 3310 00 1
Q ss_pred Cchhccc----------------------------------ccc--CeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 310 VPSILDV----------------------------------QLL--DEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 310 ~p~~l~~----------------------------------~~v--d~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.|.++.+ ... ..++.|+|+|+.++++++++++|+++.|
T Consensus 317 ~~sN~erl~~~l~~~d~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~VsD~ei~~ai~~l~~~~g~~vEP 390 (468)
T 4f4f_A 317 ISSNFERLLFEAHGRDAAAVRGLMQGLKQSGGFTISEKPLSAIRSEFSAGRSTVDETAATIESVLSKDGYLLDP 390 (468)
T ss_dssp SCTTHHHHHHHHTTTCHHHHHHHHHHHHHHSEEECCHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHHSCCCCH
T ss_pred ccchHHHHHHHHhccCHHHHHHHHHHHHhcCCeeccHHHHHHHhhcceEEEECHHHHHHHHHHHHHHCCEEECH
Confidence 1111100 001 1278999999999999999999999876
|
| >3v7n_A Threonine synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; 1.40A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=268.29 Aligned_cols=232 Identities=13% Similarity=0.050 Sum_probs=177.8
Q ss_pred CceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHH---HHHHH-HcCCCCCCCeEEEEeCCChhHHHHHHHHH-HcC
Q 019047 105 TPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSM---ITDAE-ESGDITPGKTVLVEPTTGNTGLGIAFVAA-VKG 179 (347)
Q Consensus 105 TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~---~~~a~-~~G~~~~g~~~vv~assGN~g~AlA~aa~-~~G 179 (347)
|||+++.. .-+.++|+|.|++|||||||||++..+ +.++. +.|. ..+|+++|+||||.|+|++++ ..|
T Consensus 103 ~Pl~~l~~---~~~~~l~vkee~~~PTgSFKDRga~~~~~ll~~a~~~~g~----~~~Vv~ASSGNtG~Aaa~a~~~~~G 175 (487)
T 3v7n_A 103 TPLTTLGT---ENGAPVSLLELSNGPTLAFKDMAMQLLGNLFEYTLAKHGE----TLNILGATSGDTGSAAEYAMRGKEG 175 (487)
T ss_dssp SCEEEEEE---ETTEEEEEEECCCSTTSBTHHHHHHHHHHHHHHHHHTTTC----CEEEEEECSSHHHHHHHHHHTTCTT
T ss_pred ceeEEecC---CCCcceeHHhhccCCcCcHHHHHHHHHHHHHHHHHHhcCC----CcEEEEeCChHHHHHHHHHHHhccC
Confidence 79998742 001139999999999999999999998 67775 4564 456999999999999877776 899
Q ss_pred CcEEEEeCCC-CCHHHHHHHHhcCC---EEEEECCCCChHHHHHHHHHHHHcC-----CCceecCCCCChHHHHHHHHHH
Q 019047 180 YKLIVTMPAS-TNLERRILLRAFGA---EIILTDPEKGLRGALDKAEEIVLNT-----PNAYMFQQFDNMANLKIHFDST 250 (347)
Q Consensus 180 l~~~I~vp~~-~~~~~~~~l~~~GA---~V~~~~~~~~~~~a~~~a~~~a~~~-----~~~~~~~~~~n~~~~~~g~~ti 250 (347)
++|+||||++ ++..|+.+|+.+|+ +|+.+++ +++++.+.+.+++.+. -+..+++++ |+.++ .||.|+
T Consensus 176 i~~~I~~P~~~~s~~k~~qm~~~Ga~nv~vv~v~G--~fDda~~~vk~~~~d~~~~~~~~l~~vns~-Np~ri-~gQ~ty 251 (487)
T 3v7n_A 176 VRVFMLSPHKKMSAFQTAQMYSLQDPNIFNLAVNG--VFDDCQDIVKAVSNDHAFKAQQKIGTVNSI-NWARV-VAQVVY 251 (487)
T ss_dssp EEEEEEEETTCSCHHHHHHHHTCCCTTEEEEEEES--CHHHHHHHHHHHHTCHHHHHHTTEECCSTT-CHHHH-HHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCcEEEEEECC--CHHHHHHHHHHhhhchHHHhhcCeeeeCCC-CHHHH-HhHHHH
Confidence 9999999997 99999999999998 6777775 5788988888887631 156667764 78776 699999
Q ss_pred HHHHHHhhC---CCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCc----cccCCC-----CCC---------
Q 019047 251 GPEIWEDTL---GCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERS----VISGEN-----AGY--------- 309 (347)
Q Consensus 251 ~~Ei~~ql~---~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~----~~~g~~-----~~~--------- 309 (347)
++|+..|+. +.+|+|++|+|+||+++|++.+.+...|..|+|+|++++.. +.+|.. ...
T Consensus 252 y~~~~~el~~~~~~~d~vvVP~GngG~i~g~~~A~~mGlp~~rli~a~~~n~~l~~~~~~G~~~~~~~~~Ti~t~s~smd 331 (487)
T 3v7n_A 252 YFKGYFAATRSNDERVSFTVPSGNFGNVCAGHIARMMGLPIEKLVVATNENDVLDEFFRTGAYRVRSAQDTYHTSSPSMD 331 (487)
T ss_dssp HHHHHHHTCSSTTCCEEEEEGGGCHHHHHHHHHHHHTTCCEEEEEEECTTCHHHHHHHHHSEEEC---------------
T ss_pred HHHHHHHHHhcCCCCcEEEEecCchHHHHHHHHHHHcCCCCceEEEEeCCCcHHHHHHHcCCcccCCCCCccccCCchhc
Confidence 999988883 36899999999999999998765544566799999999742 223310 001
Q ss_pred --Cchhcc---ccc-----------------------------------cCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 310 --VPSILD---VQL-----------------------------------LDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 310 --~p~~l~---~~~-----------------------------------vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.|.++. ... .-.++.|+|+|+.++++++++++|++++|
T Consensus 332 I~~psn~er~l~~l~~~d~~~~~~~m~~l~~~g~~~l~~~~~~~~~~~~~~~~~~VsDee~~~air~l~~~~G~l~dP 409 (487)
T 3v7n_A 332 ISKASNFERFVFDLLGRDPARVVQLFRDVEQKGGFDLAASGDFARVAEFGFVSGRSTHADRIATIRDVFERYRTMIDT 409 (487)
T ss_dssp ---CHHHHHHHHHHTTTCHHHHHHHHHHHHHHSEEETTTTTCTHHHHHTTEEEECCCHHHHHHHHHHHHHHSCCCCCH
T ss_pred cCCCccHHHHHHHHhCCCHHHHHHHHHHHHhcCCeecccchhHHHHHhhcceEEEECHHHHHHHHHHHHHHcCEEECh
Confidence 111111 000 01357899999999999999999999986
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=94.42 E-value=0.66 Score=37.43 Aligned_cols=97 Identities=15% Similarity=0.116 Sum_probs=67.5
Q ss_pred EEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCC
Q 019047 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQF 237 (347)
Q Consensus 158 ~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~ 237 (347)
.++..+.|..|..+|......|.+++++-. ++.+.+.++..|..++.-+..
T Consensus 9 ~viIiG~G~~G~~la~~L~~~g~~v~vid~---~~~~~~~~~~~g~~~i~gd~~-------------------------- 59 (140)
T 3fwz_A 9 HALLVGYGRVGSLLGEKLLASDIPLVVIET---SRTRVDELRERGVRAVLGNAA-------------------------- 59 (140)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEEES---CHHHHHHHHHTTCEEEESCTT--------------------------
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEEC---CHHHHHHHHHcCCCEEECCCC--------------------------
Confidence 478888999999999999999999888755 466777777788887654421
Q ss_pred CChHHHHHHHHHHHHHHHHhhC-CCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcC
Q 019047 238 DNMANLKIHFDSTGPEIWEDTL-GCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEP 296 (347)
Q Consensus 238 ~n~~~~~~g~~ti~~Ei~~ql~-~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep 296 (347)
++.. +++.+ ...|+||++++.-....-+...+++.+++.++|+-..
T Consensus 60 -~~~~------------l~~a~i~~ad~vi~~~~~~~~n~~~~~~a~~~~~~~~iiar~~ 106 (140)
T 3fwz_A 60 -NEEI------------MQLAHLECAKWLILTIPNGYEAGEIVASARAKNPDIEIIARAH 106 (140)
T ss_dssp -SHHH------------HHHTTGGGCSEEEECCSCHHHHHHHHHHHHHHCSSSEEEEEES
T ss_pred -CHHH------------HHhcCcccCCEEEEECCChHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 1111 11111 2468899888876544445567777788888887653
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=93.50 E-value=0.62 Score=43.37 Aligned_cols=63 Identities=21% Similarity=0.272 Sum_probs=49.8
Q ss_pred HHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEEC
Q 019047 143 ITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (347)
Q Consensus 143 ~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~ 209 (347)
++++.+...+++|++.+|. ++|.-|.+.+..|+.+|.+++++.. ++.+++.++.+|++.+...
T Consensus 155 a~~~l~~~~~~~g~~VlV~-GaG~vG~~a~qla~~~Ga~Vi~~~~---~~~~~~~~~~lGa~~~i~~ 217 (340)
T 3s2e_A 155 VYKGLKVTDTRPGQWVVIS-GIGGLGHVAVQYARAMGLRVAAVDI---DDAKLNLARRLGAEVAVNA 217 (340)
T ss_dssp HHHHHHTTTCCTTSEEEEE-CCSTTHHHHHHHHHHTTCEEEEEES---CHHHHHHHHHTTCSEEEET
T ss_pred HHHHHHHcCCCCCCEEEEE-CCCHHHHHHHHHHHHCCCeEEEEeC---CHHHHHHHHHcCCCEEEeC
Confidence 4566677778888887764 5688999999999999997665543 6788999999999876644
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=93.28 E-value=0.66 Score=43.06 Aligned_cols=66 Identities=20% Similarity=0.242 Sum_probs=50.9
Q ss_pred HHHHHHH-HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHH-HhcCCEEEEEC
Q 019047 141 SMITDAE-ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILL-RAFGAEIILTD 209 (347)
Q Consensus 141 ~~~~~a~-~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l-~~~GA~V~~~~ 209 (347)
..++++. +.+.+++|++.+|...+|.-|.+++..++..|.+++++.. ++.+++.+ +.+|++.+...
T Consensus 135 ~tA~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~---~~~~~~~~~~~~g~~~~~~~ 202 (336)
T 4b7c_A 135 MTAYFALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAG---GAEKCRFLVEELGFDGAIDY 202 (336)
T ss_dssp HHHHHHHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCCSEEEET
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHHcCCCEEEEC
Confidence 3445555 6777888888777777799999999999999997766543 56788888 89999766543
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=93.22 E-value=0.56 Score=44.07 Aligned_cols=64 Identities=17% Similarity=0.153 Sum_probs=50.4
Q ss_pred HHHHH-HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEEC
Q 019047 143 ITDAE-ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (347)
Q Consensus 143 ~~~a~-~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~ 209 (347)
++.+. +.+.+++|++.+|..++|.-|.+++..++..|.+++++.. ++.+++.++.+|++.+...
T Consensus 155 a~~~l~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~---~~~~~~~~~~lGa~~~~~~ 219 (353)
T 4dup_A 155 VWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAG---STGKCEACERLGAKRGINY 219 (353)
T ss_dssp HHHHHTTTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHHTCSEEEET
T ss_pred HHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhcCCCEEEeC
Confidence 44455 5677888888878778999999999999999998666543 5778888899999876543
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=92.78 E-value=0.79 Score=43.23 Aligned_cols=62 Identities=29% Similarity=0.256 Sum_probs=48.7
Q ss_pred HHHHH-HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEE
Q 019047 143 ITDAE-ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (347)
Q Consensus 143 ~~~a~-~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~ 208 (347)
++.+. +.+.+++|++.+|.. +|.-|.+.+..|+.+|.+++++.. ++.+++.++.+|++.+..
T Consensus 177 a~~al~~~~~~~~g~~VlV~G-~G~vG~~a~qla~~~Ga~Vi~~~~---~~~~~~~~~~lGa~~vi~ 239 (363)
T 3uog_A 177 AWFALVEKGHLRAGDRVVVQG-TGGVALFGLQIAKATGAEVIVTSS---SREKLDRAFALGADHGIN 239 (363)
T ss_dssp HHHHHTTTTCCCTTCEEEEES-SBHHHHHHHHHHHHTTCEEEEEES---CHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEec---CchhHHHHHHcCCCEEEc
Confidence 44555 567788888866665 899999999999999998766543 678888899999976654
|
| >1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2 | Back alignment and structure |
|---|
Probab=92.60 E-value=0.89 Score=39.53 Aligned_cols=134 Identities=19% Similarity=0.170 Sum_probs=83.0
Q ss_pred CCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEe-------CC--CCCHHHHHHHH
Q 019047 129 EPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTM-------PA--STNLERRILLR 199 (347)
Q Consensus 129 ~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~v-------p~--~~~~~~~~~l~ 199 (347)
+|+.-+=+......+.+|.+.|. +.+||..++|.++..++-+. .|++.+++- |. .+++..++.++
T Consensus 22 ~~G~eNT~~tl~la~era~e~~I----k~iVVAS~sG~TA~k~~e~~--~~i~lVvVTh~~GF~~pg~~e~~~e~~~~L~ 95 (201)
T 1vp8_A 22 KPGRENTEETLRLAVERAKELGI----KHLVVASSYGDTAMKALEMA--EGLEVVVVTYHTGFVREGENTMPPEVEEELR 95 (201)
T ss_dssp SCSGGGHHHHHHHHHHHHHHHTC----CEEEEECSSSHHHHHHHHHC--TTCEEEEEECCTTSSSTTCCSSCHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHcCC----CEEEEEeCCChHHHHHHHHh--cCCeEEEEeCcCCCCCCCCCcCCHHHHHHHH
Confidence 56666677788888889999986 57778888899987777744 788888876 32 47899999999
Q ss_pred hcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHH-HHHHHHHhh--CC--CCCEEEEecCcch
Q 019047 200 AFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDS-TGPEIWEDT--LG--CVDIFVAAIGTGG 273 (347)
Q Consensus 200 ~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~t-i~~Ei~~ql--~~--~~D~vv~pvG~Gg 273 (347)
..|.+|+...--. ..++++ +.++.+|.+...-..+..+-..|+.+ .+.||.-.. .+ ..+.||...|+|.
T Consensus 96 ~~G~~V~t~tH~l---sgveR~--is~kfGG~~p~eiiA~tLR~~fgqG~KV~vEi~lMAaDAGlIp~eeVIAiGGT~~ 169 (201)
T 1vp8_A 96 KRGAKIVRQSHIL---SGLERS--ISRKLGGVSRTEAIAEALRSLFGHGLKVCVEITIMAADSGAIPIEEVVAVGGRSR 169 (201)
T ss_dssp HTTCEEEECCCTT---TTTHHH--HHHHTCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTSSCSSCEEEEECSSS
T ss_pred hCCCEEEEEeccc---cchhHH--HHHhcCCCCHHHHHHHHHHHHhcCCceEEEEEeeeecccCCCCcceEEEEccccC
Confidence 9999999754211 112233 33355443321111122220123332 567763322 12 2377887777764
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=92.31 E-value=1.4 Score=42.59 Aligned_cols=56 Identities=16% Similarity=0.306 Sum_probs=46.4
Q ss_pred cCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 149 SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 149 ~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
...+++|++.+|...+|.-|.+++..|+.+|.+++++.. ++.+++.++.+|++.+.
T Consensus 215 ~~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~---~~~~~~~~~~lGa~~~i 270 (447)
T 4a0s_A 215 GAQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVS---SAQKEAAVRALGCDLVI 270 (447)
T ss_dssp TTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCCCEE
T ss_pred ccCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhcCCCEEE
Confidence 366788888777766799999999999999998877763 77889999999997654
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=92.29 E-value=0.87 Score=42.12 Aligned_cols=59 Identities=25% Similarity=0.309 Sum_probs=47.2
Q ss_pred HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEEC
Q 019047 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (347)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~ 209 (347)
+.+.+++|++.+|...+|.-|.+++..|+..|.+++++.. ++.+++.++.+|++.+...
T Consensus 134 ~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~---~~~~~~~~~~~Ga~~~~~~ 192 (325)
T 3jyn_A 134 QTYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVS---SPEKAAHAKALGAWETIDY 192 (325)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEES---SHHHHHHHHHHTCSEEEET
T ss_pred HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCCCEEEeC
Confidence 4566788888777777899999999999999998766654 6778888999999766543
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=91.92 E-value=0.66 Score=43.37 Aligned_cols=63 Identities=27% Similarity=0.387 Sum_probs=48.7
Q ss_pred HHHHH-HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEE
Q 019047 143 ITDAE-ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (347)
Q Consensus 143 ~~~a~-~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~ 208 (347)
++.+. +.+.+++|++.+|...+|.-|.+++..|+.+|.+++++.. +..+++.++.+|++.+..
T Consensus 147 a~~~l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~---~~~~~~~~~~~ga~~v~~ 210 (342)
T 4eye_A 147 MYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVN---RTAATEFVKSVGADIVLP 210 (342)
T ss_dssp HHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES---SGGGHHHHHHHTCSEEEE
T ss_pred HHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhcCCcEEec
Confidence 44555 6677888888777777799999999999999998776655 345677788899987653
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=91.84 E-value=1.3 Score=41.15 Aligned_cols=59 Identities=24% Similarity=0.379 Sum_probs=47.0
Q ss_pred HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEEC
Q 019047 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (347)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~ 209 (347)
+.+.+++|++.+|...+|.-|.+++..++.+|.+++++.. ++.+++.++.+|++.+...
T Consensus 142 ~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~---~~~~~~~~~~~ga~~~~~~ 200 (334)
T 3qwb_A 142 EAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVAS---TDEKLKIAKEYGAEYLINA 200 (334)
T ss_dssp TTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCSEEEET
T ss_pred HhccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCCcEEEeC
Confidence 3456788888777776899999999999999998766554 5778889999999876543
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=91.65 E-value=1.2 Score=41.64 Aligned_cols=59 Identities=20% Similarity=0.291 Sum_probs=47.9
Q ss_pred HHHHH-HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEE
Q 019047 143 ITDAE-ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEI 205 (347)
Q Consensus 143 ~~~a~-~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V 205 (347)
++.+. +.+.+++|++.+|...+|.-|.+++..|+.+|.+++++ .++.+++.++.+|++.
T Consensus 138 a~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~----~~~~~~~~~~~lGa~~ 197 (343)
T 3gaz_A 138 AWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT----ARGSDLEYVRDLGATP 197 (343)
T ss_dssp HHHHHTTTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE----ECHHHHHHHHHHTSEE
T ss_pred HHHHHHHhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE----eCHHHHHHHHHcCCCE
Confidence 44455 67778888887777778999999999999999976655 3577888999999998
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=91.54 E-value=0.96 Score=41.75 Aligned_cols=63 Identities=25% Similarity=0.356 Sum_probs=49.6
Q ss_pred HHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEEC
Q 019047 143 ITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (347)
Q Consensus 143 ~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~ 209 (347)
++++.+.+.+++|++.+|...+|.-|.+.+..|+.+|.+++++. ...+++.++.+|++.+...
T Consensus 141 a~~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~----~~~~~~~~~~lGa~~~i~~ 203 (321)
T 3tqh_A 141 ALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA----SKRNHAFLKALGAEQCINY 203 (321)
T ss_dssp HHHHHHHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE----CHHHHHHHHHHTCSEEEET
T ss_pred HHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe----ccchHHHHHHcCCCEEEeC
Confidence 45566777888998877776799999999999999999866553 4556888999999865543
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.53 E-value=1.3 Score=42.19 Aligned_cols=61 Identities=28% Similarity=0.311 Sum_probs=46.3
Q ss_pred HHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEE
Q 019047 143 ITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206 (347)
Q Consensus 143 ~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~ 206 (347)
++.+.+...+++|++++|. ++|.-|...+..|+.+|.+.+|.+. .++.|++.++.+||+++
T Consensus 174 a~~al~~~~~~~g~~VlV~-GaG~vG~~aiqlAk~~Ga~~Vi~~~--~~~~~~~~a~~lGa~~i 234 (398)
T 1kol_A 174 GYHGAVTAGVGPGSTVYVA-GAGPVGLAAAASARLLGAAVVIVGD--LNPARLAHAKAQGFEIA 234 (398)
T ss_dssp HHHHHHHTTCCTTCEEEEE-CCSHHHHHHHHHHHHTTCSEEEEEE--SCHHHHHHHHHTTCEEE
T ss_pred HHHHHHHcCCCCCCEEEEE-CCcHHHHHHHHHHHHCCCCeEEEEc--CCHHHHHHHHHcCCcEE
Confidence 4455556677888886665 5799999999999999996444443 36788999999999854
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=91.09 E-value=4 Score=39.45 Aligned_cols=97 Identities=16% Similarity=0.187 Sum_probs=68.9
Q ss_pred EEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCC
Q 019047 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQF 237 (347)
Q Consensus 158 ~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~ 237 (347)
.|+..+.|..|..+|..-...|++++|+-. ++.+++.++.+|.+|+.-+..
T Consensus 6 ~viIiG~Gr~G~~va~~L~~~g~~vvvId~---d~~~v~~~~~~g~~vi~GDat-------------------------- 56 (413)
T 3l9w_A 6 RVIIAGFGRFGQITGRLLLSSGVKMVVLDH---DPDHIETLRKFGMKVFYGDAT-------------------------- 56 (413)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEEC---CHHHHHHHHHTTCCCEESCTT--------------------------
T ss_pred eEEEECCCHHHHHHHHHHHHCCCCEEEEEC---CHHHHHHHHhCCCeEEEcCCC--------------------------
Confidence 378888999999999999999999888743 567778888888777654421
Q ss_pred CChHHHHHHHHHHHHHHHHhhC-CCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcC
Q 019047 238 DNMANLKIHFDSTGPEIWEDTL-GCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEP 296 (347)
Q Consensus 238 ~n~~~~~~g~~ti~~Ei~~ql~-~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep 296 (347)
+... +++.+ .+.|.||++++.-....-++...|+.+++.+||+---
T Consensus 57 -~~~~------------L~~agi~~A~~viv~~~~~~~n~~i~~~ar~~~p~~~Iiara~ 103 (413)
T 3l9w_A 57 -RMDL------------LESAGAAKAEVLINAIDDPQTNLQLTEMVKEHFPHLQIIARAR 103 (413)
T ss_dssp -CHHH------------HHHTTTTTCSEEEECCSSHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred -CHHH------------HHhcCCCccCEEEECCCChHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 1111 11211 3568888888876666666777888888888887543
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=90.85 E-value=1.1 Score=41.91 Aligned_cols=62 Identities=23% Similarity=0.170 Sum_probs=47.4
Q ss_pred HHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCC-cEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 142 MITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGY-KLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 142 ~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl-~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
.++++.+...+++|++.+|. ++|.-|.+.+..|+.+|. +++++ . .++.|++.++.+||+.+.
T Consensus 154 ta~~al~~~~~~~g~~VlV~-GaG~vG~~a~qla~~~Ga~~Vi~~-~--~~~~~~~~~~~lGa~~vi 216 (352)
T 3fpc_A 154 TGFHGAELANIKLGDTVCVI-GIGPVGLMSVAGANHLGAGRIFAV-G--SRKHCCDIALEYGATDII 216 (352)
T ss_dssp HHHHHHHHTTCCTTCCEEEE-CCSHHHHHHHHHHHTTTCSSEEEE-C--CCHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEE-C--CCHHHHHHHHHhCCceEE
Confidence 34455667778888887666 579999999999999998 45543 3 367888999999997654
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=90.72 E-value=1.6 Score=40.55 Aligned_cols=62 Identities=19% Similarity=0.235 Sum_probs=47.3
Q ss_pred HHHHHHc-CCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 143 ITDAEES-GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 143 ~~~a~~~-G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
++.+... +.++++++.+|...+|..|.+++..++.+|.+++++.. ++.+++.++.+|++.+.
T Consensus 154 a~~al~~~~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~---~~~~~~~~~~~ga~~~~ 216 (343)
T 2eih_A 154 AWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAG---SEDKLRRAKALGADETV 216 (343)
T ss_dssp HHHHHTTTSCCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHhcCCCEEE
Confidence 4455554 46778888777777799999999999999997666544 46778888889987553
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=90.70 E-value=2.4 Score=40.03 Aligned_cols=83 Identities=17% Similarity=0.169 Sum_probs=56.7
Q ss_pred EEEEeCCCCCC-CchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHH
Q 019047 121 VAAKLESMEPC-RSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLR 199 (347)
Q Consensus 121 Iy~K~E~~~pt-GSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~ 199 (347)
++-+-|+..+. .+ .-.....++.+.+...+++|++++|. ++|.-|.+.+..|+.+|.+-+|.+. .++.+++.++
T Consensus 150 ~~~~P~~~~~~~aa--l~~~~~ta~~~l~~~~~~~g~~VlV~-GaG~vG~~aiqlak~~Ga~~Vi~~~--~~~~~~~~a~ 224 (370)
T 4ej6_A 150 AFEIPLTLDPVHGA--FCEPLACCLHGVDLSGIKAGSTVAIL-GGGVIGLLTVQLARLAGATTVILST--RQATKRRLAE 224 (370)
T ss_dssp EEEECTTSCTTGGG--GHHHHHHHHHHHHHHTCCTTCEEEEE-CCSHHHHHHHHHHHHTTCSEEEEEC--SCHHHHHHHH
T ss_pred EEECCCCCCHHHHh--hhhHHHHHHHHHHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHH
Confidence 44444555543 33 22234444556666677888886665 5699999999999999995555443 3678889999
Q ss_pred hcCCEEEEE
Q 019047 200 AFGAEIILT 208 (347)
Q Consensus 200 ~~GA~V~~~ 208 (347)
.+|++.+..
T Consensus 225 ~lGa~~vi~ 233 (370)
T 4ej6_A 225 EVGATATVD 233 (370)
T ss_dssp HHTCSEEEC
T ss_pred HcCCCEEEC
Confidence 999986653
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=90.68 E-value=1.7 Score=40.75 Aligned_cols=64 Identities=16% Similarity=0.191 Sum_probs=48.5
Q ss_pred HHHHHH-HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEE
Q 019047 142 MITDAE-ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (347)
Q Consensus 142 ~~~~a~-~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~ 208 (347)
.++.+. +.+.+++|++.+|...+|..|.+++..++..|.+++++.. ++.+++.++.+|++.+..
T Consensus 149 tA~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~---~~~~~~~~~~~g~~~~~~ 213 (354)
T 2j8z_A 149 TAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAG---SQKKLQMAEKLGAAAGFN 213 (354)
T ss_dssp HHHHHHTTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES---CHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEEEe
Confidence 344555 4566788888777766899999999999999998666543 467788888899986543
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=90.37 E-value=2.4 Score=39.28 Aligned_cols=65 Identities=23% Similarity=0.251 Sum_probs=50.6
Q ss_pred HHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCC
Q 019047 144 TDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPE 211 (347)
Q Consensus 144 ~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~ 211 (347)
..+.......+|++.+|. ++|.-|...+..|+.+|.+.+|.+. .++.|++.++.+||+.+....+
T Consensus 150 ~~~~~~~~~~~g~~VlV~-GaG~vG~~aiq~ak~~G~~~vi~~~--~~~~k~~~a~~lGa~~~i~~~~ 214 (346)
T 4a2c_A 150 LHAFHLAQGCENKNVIII-GAGTIGLLAIQCAVALGAKSVTAID--ISSEKLALAKSFGAMQTFNSSE 214 (346)
T ss_dssp HHHHHHTTCCTTSEEEEE-CCSHHHHHHHHHHHHTTCSEEEEEE--SCHHHHHHHHHTTCSEEEETTT
T ss_pred HHHHHHhccCCCCEEEEE-CCCCcchHHHHHHHHcCCcEEEEEe--chHHHHHHHHHcCCeEEEeCCC
Confidence 445566667788775555 6788999999999999999887764 4678999999999988776543
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.29 E-value=2.6 Score=39.46 Aligned_cols=64 Identities=25% Similarity=0.308 Sum_probs=48.8
Q ss_pred HHHHHHH-cCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEE
Q 019047 142 MITDAEE-SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (347)
Q Consensus 142 ~~~~a~~-~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~ 208 (347)
.++.+.. .+.+++|++.+|...+|.-|.+++..++..|.+++++.. ++.+++.++.+|++.+..
T Consensus 157 ta~~al~~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~---~~~~~~~~~~~ga~~~~d 221 (351)
T 1yb5_A 157 TAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAG---TEEGQKIVLQNGAHEVFN 221 (351)
T ss_dssp HHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHhhCCCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeC---ChhHHHHHHHcCCCEEEe
Confidence 3445553 567788888777777899999999999999997666543 467778888999976543
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=90.26 E-value=1.9 Score=40.59 Aligned_cols=59 Identities=25% Similarity=0.354 Sum_probs=46.2
Q ss_pred HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEEC
Q 019047 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (347)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~ 209 (347)
+.+.+++|++.+|...+|.-|.+++..|+.+|.+++++.. ++.+++.++.+|++.+...
T Consensus 157 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~---~~~~~~~~~~~Ga~~~~~~ 215 (362)
T 2c0c_A 157 ELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCS---SDEKSAFLKSLGCDRPINY 215 (362)
T ss_dssp HHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCSEEEET
T ss_pred HhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEEC---CHHHHHHHHHcCCcEEEec
Confidence 4566778888666666899999999999999997665554 4778888899999876543
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=90.24 E-value=2.1 Score=39.86 Aligned_cols=64 Identities=22% Similarity=0.213 Sum_probs=47.8
Q ss_pred HHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHc-CCcEEEEeCCCCCHHHHHHHHhcCCEEEEEC
Q 019047 143 ITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVK-GYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (347)
Q Consensus 143 ~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~-Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~ 209 (347)
++.+.+...++++++.+|...+|.-|.+++..++.. |.+++++.. ++.+++.++.+|++.+...
T Consensus 159 a~~~l~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~---~~~~~~~~~~~g~~~~~~~ 223 (347)
T 1jvb_A 159 TYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDV---REEAVEAAKRAGADYVINA 223 (347)
T ss_dssp HHHHHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEES---SHHHHHHHHHHTCSEEEET
T ss_pred HHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcC---CHHHHHHHHHhCCCEEecC
Confidence 445555566778888777777669999999999999 998665543 4677888888999766543
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.18 E-value=2.2 Score=39.97 Aligned_cols=63 Identities=19% Similarity=0.171 Sum_probs=47.1
Q ss_pred HHHHHHc--CCCCCCCeEEEEeCCChhHHHHHHHHHHc-CCcEEEEeCCCCCHHHHHHHHhcCCEEEEEC
Q 019047 143 ITDAEES--GDITPGKTVLVEPTTGNTGLGIAFVAAVK-GYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (347)
Q Consensus 143 ~~~a~~~--G~~~~g~~~vv~assGN~g~AlA~aa~~~-Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~ 209 (347)
++.+... ..+++|++.+|... |.-|...+..|+.+ |.+++++.. ++.|++.++.+||+.+.-.
T Consensus 173 a~~al~~~~~~~~~g~~VlV~Ga-G~vG~~avqlak~~~Ga~Vi~~~~---~~~~~~~~~~lGa~~vi~~ 238 (359)
T 1h2b_A 173 AYRAVKKAARTLYPGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDV---KEEKLKLAERLGADHVVDA 238 (359)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEES---SHHHHHHHHHTTCSEEEET
T ss_pred HHHHHHhhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHHHHhCCCEEEec
Confidence 4555555 67788887666555 89999999999999 997555443 5778999999999766543
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=90.16 E-value=2.4 Score=35.77 Aligned_cols=60 Identities=27% Similarity=0.488 Sum_probs=43.3
Q ss_pred HHHH-HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEE
Q 019047 144 TDAE-ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206 (347)
Q Consensus 144 ~~a~-~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~ 206 (347)
+++. +.+.+++|++.+|...+|.-|.+++..++..|.+++++.. +..+.+.++.+|++.+
T Consensus 27 ~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~---~~~~~~~~~~~g~~~~ 87 (198)
T 1pqw_A 27 WHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAG---SDAKREMLSRLGVEYV 87 (198)
T ss_dssp HHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEES---SHHHHHHHHTTCCSEE
T ss_pred HHHHHHHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEE
Confidence 4444 3456778877666666899999999999999987666543 4566667777787543
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=90.11 E-value=2.5 Score=39.02 Aligned_cols=63 Identities=24% Similarity=0.307 Sum_probs=47.5
Q ss_pred HHHHHH-HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 142 MITDAE-ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 142 ~~~~a~-~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
.++++. +.+.+++|++.+|...+|..|.+++..++..|.+++++.. +..+++.++.+|++.+.
T Consensus 132 ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~---~~~~~~~~~~~g~~~~~ 195 (333)
T 1v3u_A 132 TAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAG---SDEKIAYLKQIGFDAAF 195 (333)
T ss_dssp HHHHHHHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHhcCCcEEE
Confidence 344554 5566778888777777799999999999999997666543 46777777889987554
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=89.87 E-value=1.2 Score=41.39 Aligned_cols=60 Identities=17% Similarity=0.245 Sum_probs=46.1
Q ss_pred HHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEEC
Q 019047 147 EESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (347)
Q Consensus 147 ~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~ 209 (347)
.+...+++|++.+|...+|..|.+++..|+.+|.+++++... ..+++.++.+|++.+...
T Consensus 137 ~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~---~~~~~~~~~lga~~~~~~ 196 (340)
T 3gms_A 137 TETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRN---NKHTEELLRLGAAYVIDT 196 (340)
T ss_dssp HTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESS---STTHHHHHHHTCSEEEET
T ss_pred HHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHhCCCcEEEeC
Confidence 366778888887777777799999999999999987766553 345677778999876543
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.80 E-value=2.3 Score=39.15 Aligned_cols=62 Identities=23% Similarity=0.207 Sum_probs=46.9
Q ss_pred HHHHHH-cCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 143 ITDAEE-SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 143 ~~~a~~-~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
++.+.. .+.+++|++.+|...+|.-|.+++..++..|.+++++.. ++.+++.++.+|++.+.
T Consensus 128 a~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~---~~~~~~~~~~~g~~~~~ 190 (327)
T 1qor_A 128 VYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVG---TAQKAQSALKAGAWQVI 190 (327)
T ss_dssp HHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEES---SHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEE
Confidence 345554 566788888777776899999999999999997666543 46777788888987554
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=89.63 E-value=2.2 Score=39.73 Aligned_cols=61 Identities=26% Similarity=0.341 Sum_probs=46.9
Q ss_pred HHHH-HcCCCC------CCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 144 TDAE-ESGDIT------PGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 144 ~~a~-~~G~~~------~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
+.+. +.+.++ +|++.+|..++|.-|.+.+..|+.+|.+++++.. ++.+++.++.+|++.+.
T Consensus 133 ~~~l~~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~---~~~~~~~~~~lGa~~vi 200 (346)
T 3fbg_A 133 YETLFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGLRVITTAS---RNETIEWTKKMGADIVL 200 (346)
T ss_dssp HHHHHTTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECC---SHHHHHHHHHHTCSEEE
T ss_pred HHHHHHhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhcCCcEEE
Confidence 3443 455555 7788788878999999999999999997655533 57888999999998665
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=89.55 E-value=2.4 Score=39.23 Aligned_cols=62 Identities=21% Similarity=0.248 Sum_probs=46.6
Q ss_pred HHHHHH-cCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 143 ITDAEE-SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 143 ~~~a~~-~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
++++.. .+.++++++.+|...+|..|.+++..++..|.+++++.. +..+++.++.+|++.+.
T Consensus 133 a~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~---~~~~~~~~~~~g~~~~~ 195 (333)
T 1wly_A 133 AQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVS---TEEKAETARKLGCHHTI 195 (333)
T ss_dssp HHHHHHTTSCCCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHhhCCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCCCEEE
Confidence 345553 566788888767666799999999999999997666544 46677788888987654
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.41 E-value=1.5 Score=41.55 Aligned_cols=62 Identities=27% Similarity=0.285 Sum_probs=47.8
Q ss_pred HHHHHHcCC-CCCCCeEEEEeCCChhHHHHHHHHHHcC-CcEEEEeCCCCCHHHHHHHHhcCCEEEEE
Q 019047 143 ITDAEESGD-ITPGKTVLVEPTTGNTGLGIAFVAAVKG-YKLIVTMPASTNLERRILLRAFGAEIILT 208 (347)
Q Consensus 143 ~~~a~~~G~-~~~g~~~vv~assGN~g~AlA~aa~~~G-l~~~I~vp~~~~~~~~~~l~~~GA~V~~~ 208 (347)
++.+.+... +++|++.+|.. +|.-|.+.+..|+.+| .+++++.. ++.+++.++.+|++.+..
T Consensus 183 a~~al~~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~---~~~~~~~~~~lGa~~vi~ 246 (380)
T 1vj0_A 183 AYHAFDEYPESFAGKTVVIQG-AGPLGLFGVVIARSLGAENVIVIAG---SPNRLKLAEEIGADLTLN 246 (380)
T ss_dssp HHHHHHTCSSCCBTCEEEEEC-CSHHHHHHHHHHHHTTBSEEEEEES---CHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHhcCCCCCCCEEEEEC-cCHHHHHHHHHHHHcCCceEEEEcC---CHHHHHHHHHcCCcEEEe
Confidence 445556666 77888877766 8999999999999999 47666654 578888999999976543
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=89.15 E-value=1.6 Score=40.86 Aligned_cols=65 Identities=17% Similarity=0.171 Sum_probs=48.2
Q ss_pred HHHHHHc-CCCCCC-CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHhcCCEEEE
Q 019047 143 ITDAEES-GDITPG-KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIIL 207 (347)
Q Consensus 143 ~~~a~~~-G~~~~g-~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~-~~~~~~l~~~GA~V~~ 207 (347)
++.+... +.+++| ++.+|...+|.-|.+.+..|+.+|.++++++..... ..++..++.+||+.+.
T Consensus 154 a~~~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi 221 (364)
T 1gu7_A 154 AYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVI 221 (364)
T ss_dssp HHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHhhccCCCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccHHHHHHHHhcCCeEEE
Confidence 3455544 567888 887776667999999999999999998777754434 3445677889998654
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=89.11 E-value=1.2 Score=42.12 Aligned_cols=52 Identities=23% Similarity=0.155 Sum_probs=42.2
Q ss_pred CCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEE
Q 019047 153 TPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (347)
Q Consensus 153 ~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~ 208 (347)
++|++.+|...+|.-|.+.+..|+.+|.+++++. ++.|++.++.+||+.+..
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~----~~~~~~~~~~lGa~~vi~ 214 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC----SPHNFDLAKSRGAEEVFD 214 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE----CGGGHHHHHHTTCSEEEE
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe----CHHHHHHHHHcCCcEEEE
Confidence 6777877777779999999999999999876653 456888999999976654
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=88.92 E-value=0.68 Score=42.60 Aligned_cols=63 Identities=16% Similarity=0.067 Sum_probs=49.0
Q ss_pred HHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 140 YSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 140 ~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
...++++.+.+.+++|++.+|... |.-|.+.+..|+.+|.+++++. ++.|++.++.+||+.+.
T Consensus 128 ~~ta~~al~~~~~~~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~----~~~~~~~~~~lGa~~v~ 190 (315)
T 3goh_A 128 LLTAWQAFEKIPLTKQREVLIVGF-GAVNNLLTQMLNNAGYVVDLVS----ASLSQALAAKRGVRHLY 190 (315)
T ss_dssp HHHHHHHHTTSCCCSCCEEEEECC-SHHHHHHHHHHHHHTCEEEEEC----SSCCHHHHHHHTEEEEE
T ss_pred HHHHHHHHhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEE----ChhhHHHHHHcCCCEEE
Confidence 344556677778889988766666 9999999999999999766654 34567788899998776
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=88.83 E-value=2.7 Score=39.52 Aligned_cols=65 Identities=22% Similarity=0.292 Sum_probs=47.4
Q ss_pred HHHHHH-HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEEC
Q 019047 142 MITDAE-ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (347)
Q Consensus 142 ~~~~a~-~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~ 209 (347)
.++.+. +...+++|++.+|. ++|.-|.+++..|+.+|.+.++.+. .++.+++.++.+|++.+...
T Consensus 177 ta~~al~~~~~~~~g~~VlV~-GaG~vG~~a~qlak~~Ga~~Vi~~~--~~~~~~~~a~~lGa~~vi~~ 242 (371)
T 1f8f_A 177 TGAGACINALKVTPASSFVTW-GAGAVGLSALLAAKVCGASIIIAVD--IVESRLELAKQLGATHVINS 242 (371)
T ss_dssp HHHHHHHTTTCCCTTCEEEEE-SCSHHHHHHHHHHHHHTCSEEEEEE--SCHHHHHHHHHHTCSEEEET
T ss_pred HHHHHHHhccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEC--CCHHHHHHHHHcCCCEEecC
Confidence 344444 56677888886666 4799999999999999995333332 26788899999999866543
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=88.61 E-value=3.3 Score=38.61 Aligned_cols=62 Identities=26% Similarity=0.352 Sum_probs=46.5
Q ss_pred HHHHH-HcCCCCCC--CeEEEEeCCChhHHHHHHHHHHcCC-cEEEEeCCCCCHHHHHHHHh-cCCEEEE
Q 019047 143 ITDAE-ESGDITPG--KTVLVEPTTGNTGLGIAFVAAVKGY-KLIVTMPASTNLERRILLRA-FGAEIIL 207 (347)
Q Consensus 143 ~~~a~-~~G~~~~g--~~~vv~assGN~g~AlA~aa~~~Gl-~~~I~vp~~~~~~~~~~l~~-~GA~V~~ 207 (347)
++++. +.+.+++| ++.+|...+|.-|.+++..++..|. +++++.. +..+++.++. +|++.+.
T Consensus 146 a~~al~~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~---~~~~~~~~~~~~g~~~~~ 212 (357)
T 2zb4_A 146 SLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICG---THEKCILLTSELGFDAAI 212 (357)
T ss_dssp HHHHHHHHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEES---CHHHHHHHHHTSCCSEEE
T ss_pred HHHHHHHhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeC---CHHHHHHHHHHcCCceEE
Confidence 34444 56667788 8877777779999999999999999 7666544 4567777775 8987554
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=88.55 E-value=2.8 Score=39.04 Aligned_cols=61 Identities=34% Similarity=0.439 Sum_probs=46.4
Q ss_pred HHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCC-cEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 142 MITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGY-KLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 142 ~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl-~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
.++++.+...+ +|++.+|... |.-|.+++..|+.+|. +++++.. ++.+++.++.+|++.+.
T Consensus 156 ta~~~l~~~~~-~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~---~~~~~~~~~~~Ga~~~~ 217 (348)
T 2d8a_A 156 NAVDTVLAGPI-SGKSVLITGA-GPLGLLGIAVAKASGAYPVIVSEP---SDFRRELAKKVGADYVI 217 (348)
T ss_dssp HHHHHHTTSCC-TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEECS---CHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHhcCC-CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECC---CHHHHHHHHHhCCCEEE
Confidence 34555666666 8888666665 9999999999999998 6665543 47788888999997654
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=88.55 E-value=2.1 Score=41.60 Aligned_cols=57 Identities=25% Similarity=0.340 Sum_probs=47.2
Q ss_pred CCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEEC
Q 019047 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (347)
Q Consensus 150 G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~ 209 (347)
..+++|++++|...+|.-|.+.+..|+.+|.+++++.. ++.|++.++.+||+.+...
T Consensus 224 ~~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~---~~~~~~~~~~lGa~~vi~~ 280 (456)
T 3krt_A 224 AGMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVS---SPQKAEICRAMGAEAIIDR 280 (456)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHHTCCEEEET
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEEC---CHHHHHHHHhhCCcEEEec
Confidence 56788888766666799999999999999998877763 7889999999999876654
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=88.52 E-value=2.9 Score=38.96 Aligned_cols=62 Identities=26% Similarity=0.285 Sum_probs=45.8
Q ss_pred HHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEE
Q 019047 143 ITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (347)
Q Consensus 143 ~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~ 208 (347)
++++.+...+++|++.+|.. +|.-|.+++..|+.+|.+++++. .++.+++.++.+|++.+..
T Consensus 157 a~~al~~~~~~~g~~VlV~G-aG~vG~~a~qla~~~Ga~Vi~~~---~~~~~~~~~~~lGa~~~~~ 218 (352)
T 1e3j_A 157 GVHACRRAGVQLGTTVLVIG-AGPIGLVSVLAAKAYGAFVVCTA---RSPRRLEVAKNCGADVTLV 218 (352)
T ss_dssp HHHHHHHHTCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEE---SCHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEc---CCHHHHHHHHHhCCCEEEc
Confidence 34455555677888866655 69999999999999999843332 3678888999999975543
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=88.50 E-value=1.8 Score=40.39 Aligned_cols=51 Identities=25% Similarity=0.320 Sum_probs=40.3
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEEC
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~ 209 (347)
++.++..++|.-|.+++..|+.+|.+++++.. ++.+++.++.+|++.+...
T Consensus 166 ~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~---~~~~~~~~~~~Ga~~~~~~ 216 (349)
T 3pi7_A 166 KAFVMTAGASQLCKLIIGLAKEEGFRPIVTVR---RDEQIALLKDIGAAHVLNE 216 (349)
T ss_dssp SEEEESSTTSHHHHHHHHHHHHHTCEEEEEES---CGGGHHHHHHHTCSEEEET
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCCCEEEEC
Confidence 46667778999999999999999998766654 4556778888999866544
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.47 E-value=3.3 Score=38.49 Aligned_cols=62 Identities=21% Similarity=0.333 Sum_probs=46.3
Q ss_pred HHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 143 ITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 143 ~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
++.+.+...+++|++.+|...+|..|.+++..++..|.+++++... ..+++.++.+|++.+.
T Consensus 158 a~~~l~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~---~~~~~~~~~~g~~~~~ 219 (347)
T 2hcy_A 158 VYKALKSANLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGG---EGKEELFRSIGGEVFI 219 (347)
T ss_dssp HHHHHHTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECS---TTHHHHHHHTTCCEEE
T ss_pred HHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCC---HHHHHHHHHcCCceEE
Confidence 4555555567788887777777999999999999999977766542 3455677788987554
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=88.35 E-value=9.8 Score=31.51 Aligned_cols=94 Identities=17% Similarity=0.132 Sum_probs=63.5
Q ss_pred EEEeCCChhHHHHHHHHHHc-CCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCC
Q 019047 159 LVEPTTGNTGLGIAFVAAVK-GYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQF 237 (347)
Q Consensus 159 vv~assGN~g~AlA~aa~~~-Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~ 237 (347)
++..+.|..|..+|...... |.+++++-. ++.+...++..|.+++..+..
T Consensus 42 v~IiG~G~~G~~~a~~L~~~~g~~V~vid~---~~~~~~~~~~~g~~~~~gd~~-------------------------- 92 (183)
T 3c85_A 42 VLILGMGRIGTGAYDELRARYGKISLGIEI---REEAAQQHRSEGRNVISGDAT-------------------------- 92 (183)
T ss_dssp EEEECCSHHHHHHHHHHHHHHCSCEEEEES---CHHHHHHHHHTTCCEEECCTT--------------------------
T ss_pred EEEECCCHHHHHHHHHHHhccCCeEEEEEC---CHHHHHHHHHCCCCEEEcCCC--------------------------
Confidence 55668999999999999888 998887744 456677777778776654321
Q ss_pred CChHHHHHHHHHHHHHHHHhh--CCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEE
Q 019047 238 DNMANLKIHFDSTGPEIWEDT--LGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGV 294 (347)
Q Consensus 238 ~n~~~~~~g~~ti~~Ei~~ql--~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigV 294 (347)
+... .++. -...|.||++++......-+...++..++..+|+..
T Consensus 93 -~~~~------------l~~~~~~~~ad~vi~~~~~~~~~~~~~~~~~~~~~~~~ii~~ 138 (183)
T 3c85_A 93 -DPDF------------WERILDTGHVKLVLLAMPHHQGNQTALEQLQRRNYKGQIAAI 138 (183)
T ss_dssp -CHHH------------HHTBCSCCCCCEEEECCSSHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred -CHHH------------HHhccCCCCCCEEEEeCCChHHHHHHHHHHHHHCCCCEEEEE
Confidence 1101 1111 135788998888766555566677777777777764
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=88.29 E-value=3.3 Score=38.33 Aligned_cols=63 Identities=22% Similarity=0.258 Sum_probs=47.0
Q ss_pred HHHHHH-HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHH-hcCCEEEE
Q 019047 142 MITDAE-ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLR-AFGAEIIL 207 (347)
Q Consensus 142 ~~~~a~-~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~-~~GA~V~~ 207 (347)
.++.+. +...+++|++.+|...+|.-|.+++..++..|.+++++.. +..+++.++ .+|++.+.
T Consensus 142 ta~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~---~~~~~~~~~~~~g~~~~~ 206 (345)
T 2j3h_A 142 TAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAG---SKEKVDLLKTKFGFDDAF 206 (345)
T ss_dssp HHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTSCCSEEE
T ss_pred HHHHHHHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHHcCCceEE
Confidence 344555 5566778888777777799999999999999987665543 567788887 78987554
|
| >3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=88.26 E-value=2.4 Score=40.12 Aligned_cols=53 Identities=26% Similarity=0.343 Sum_probs=42.1
Q ss_pred CCCeEEEE-eCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEEC
Q 019047 154 PGKTVLVE-PTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (347)
Q Consensus 154 ~g~~~vv~-assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~ 209 (347)
+|++.+|. +++|..|.+.+..|+.+|.+++++.. ++.|++.++.+|++.+...
T Consensus 170 ~g~~vlV~gag~G~vG~~a~q~a~~~Ga~Vi~~~~---~~~~~~~~~~lGa~~~~~~ 223 (379)
T 3iup_A 170 EGHSALVHTAAASNLGQMLNQICLKDGIKLVNIVR---KQEQADLLKAQGAVHVCNA 223 (379)
T ss_dssp TTCSCEEESSTTSHHHHHHHHHHHHHTCCEEEEES---SHHHHHHHHHTTCSCEEET
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEC---CHHHHHHHHhCCCcEEEeC
Confidence 44576776 38899999999999999998776653 6789999999999865543
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=88.10 E-value=3.5 Score=39.29 Aligned_cols=56 Identities=25% Similarity=0.433 Sum_probs=43.4
Q ss_pred CCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEE
Q 019047 150 GDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (347)
Q Consensus 150 G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~ 208 (347)
+.+++|++++|. ++|.-|.+.+..|+.+|..-+|.+. .++.|++.++.+||+.+..
T Consensus 209 ~~~~~g~~VlV~-GaG~vG~~aiqlak~~Ga~~Vi~~~--~~~~~~~~~~~lGa~~vi~ 264 (404)
T 3ip1_A 209 GGIRPGDNVVIL-GGGPIGLAAVAILKHAGASKVILSE--PSEVRRNLAKELGADHVID 264 (404)
T ss_dssp CCCCTTCEEEEE-CCSHHHHHHHHHHHHTTCSEEEEEC--SCHHHHHHHHHHTCSEEEC
T ss_pred cCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEC--CCHHHHHHHHHcCCCEEEc
Confidence 367888886665 5699999999999999995444443 3678899999999986653
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=87.83 E-value=4 Score=38.81 Aligned_cols=60 Identities=32% Similarity=0.273 Sum_probs=45.5
Q ss_pred HHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCC-cEEEEeCCCCCHHHHHHHHhcCCEEE
Q 019047 143 ITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGY-KLIVTMPASTNLERRILLRAFGAEII 206 (347)
Q Consensus 143 ~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl-~~~I~vp~~~~~~~~~~l~~~GA~V~ 206 (347)
++.+.+...+++|++++|.. +|.-|...+..|+.+|. +++++.. ++.+++.++.+|++++
T Consensus 174 a~~al~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~---~~~~~~~a~~lGa~~i 234 (398)
T 2dph_A 174 GFHGCVSAGVKPGSHVYIAG-AGPVGRCAAAGARLLGAACVIVGDQ---NPERLKLLSDAGFETI 234 (398)
T ss_dssp HHHHHHHTTCCTTCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEEES---CHHHHHHHHTTTCEEE
T ss_pred HHHHHHHcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcC---CHHHHHHHHHcCCcEE
Confidence 34555666778888866654 69999999999999998 5554443 5778899999999744
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=87.63 E-value=3.2 Score=38.54 Aligned_cols=60 Identities=20% Similarity=0.246 Sum_probs=43.2
Q ss_pred HHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 144 TDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 144 ~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
+.+.+...+++|++.+|... |.-|.+++..++.+|.+++++.. ++.+++.++.+|++.+.
T Consensus 154 ~~~l~~~~~~~g~~VlV~Ga-G~vG~~~~~~a~~~Ga~Vi~~~~---~~~~~~~~~~lGa~~~~ 213 (339)
T 1rjw_A 154 YKALKVTGAKPGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDI---GDEKLELAKELGADLVV 213 (339)
T ss_dssp HHHHHHHTCCTTCEEEEECC-STTHHHHHHHHHHTTCEEEEECS---CHHHHHHHHHTTCSEEE
T ss_pred HHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHCCCCEEe
Confidence 34443334677777666655 77999999999999986555433 57788888999997553
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=87.58 E-value=1.3 Score=41.41 Aligned_cols=60 Identities=18% Similarity=0.120 Sum_probs=45.5
Q ss_pred HHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 144 TDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 144 ~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
+.+.+...+++|++.+|. ++|.-|.+.+..|+.+|.+++++.. ++.+++.++.+|++.+.
T Consensus 166 ~~~l~~~~~~~g~~VlV~-GaG~vG~~a~qla~~~Ga~Vi~~~~---~~~~~~~~~~lGa~~v~ 225 (348)
T 3two_A 166 YSPLKFSKVTKGTKVGVA-GFGGLGSMAVKYAVAMGAEVSVFAR---NEHKKQDALSMGVKHFY 225 (348)
T ss_dssp HHHHHHTTCCTTCEEEEE-SCSHHHHHHHHHHHHTTCEEEEECS---SSTTHHHHHHTTCSEEE
T ss_pred HHHHHhcCCCCCCEEEEE-CCcHHHHHHHHHHHHCCCeEEEEeC---CHHHHHHHHhcCCCeec
Confidence 455555567888887665 5699999999999999997665543 34567788889998776
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=87.39 E-value=2.6 Score=39.39 Aligned_cols=64 Identities=19% Similarity=0.328 Sum_probs=49.2
Q ss_pred HHHH-HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHhcCCEEEE
Q 019047 144 TDAE-ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIIL 207 (347)
Q Consensus 144 ~~a~-~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~-~~~~~~l~~~GA~V~~ 207 (347)
+.+. +.+.+++|++.+|...+|.-|.+.+..|+.+|.++++++..... ..+++.++.+||+.+.
T Consensus 156 ~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi 221 (357)
T 1zsy_A 156 YRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVI 221 (357)
T ss_dssp HHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHHhcCCcEEE
Confidence 3343 45677888887777767999999999999999998887765433 4577888999998654
|
| >1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.49.1.2 | Back alignment and structure |
|---|
Probab=86.61 E-value=2.6 Score=36.66 Aligned_cols=74 Identities=19% Similarity=0.268 Sum_probs=56.2
Q ss_pred CCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEe-------CC--CCCHHHHHHHH
Q 019047 129 EPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTM-------PA--STNLERRILLR 199 (347)
Q Consensus 129 ~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~v-------p~--~~~~~~~~~l~ 199 (347)
+|+.-+-+......+.+|++.|. +.+||..++|.++..++-+. .| +.+++- |. .+++..++.++
T Consensus 30 ~~G~eNT~~tl~la~era~e~~I----k~iVVASssG~TA~k~~e~~--~~-~lVvVTh~~GF~~pg~~e~~~e~~~~L~ 102 (206)
T 1t57_A 30 EPGKENTERVLELVGERADQLGI----RNFVVASVSGETALRLSEMV--EG-NIVSVTHHAGFREKGQLELEDEARDALL 102 (206)
T ss_dssp SCSGGGHHHHHHHHHHHHHHHTC----CEEEEECSSSHHHHHHHTTC--CS-EEEEECCCTTSSSTTCCSSCHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHcCC----CEEEEEeCCCHHHHHHHHHc--cC-CEEEEeCcCCCCCCCCCcCCHHHHHHHH
Confidence 56666777788888899999986 57778888899987766633 45 666654 22 47899999999
Q ss_pred hcCCEEEEEC
Q 019047 200 AFGAEIILTD 209 (347)
Q Consensus 200 ~~GA~V~~~~ 209 (347)
..|.+|+...
T Consensus 103 ~~G~~V~t~t 112 (206)
T 1t57_A 103 ERGVNVYAGS 112 (206)
T ss_dssp HHTCEEECCS
T ss_pred hCCCEEEEee
Confidence 9999998653
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.36 E-value=3.4 Score=38.89 Aligned_cols=63 Identities=21% Similarity=0.212 Sum_probs=47.0
Q ss_pred HHHHH-HcCC----CCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEEC
Q 019047 143 ITDAE-ESGD----ITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (347)
Q Consensus 143 ~~~a~-~~G~----~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~ 209 (347)
++.+. +.+. +++|++.+|...+|.-|.+++..|+.+|.++++.. +..+++.++.+|++.+...
T Consensus 167 A~~al~~~~~~~~~~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~----~~~~~~~~~~lGa~~v~~~ 234 (375)
T 2vn8_A 167 AWSAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC----SQDASELVRKLGADDVIDY 234 (375)
T ss_dssp HHHHHTTTTCCCTTTCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE----CGGGHHHHHHTTCSEEEET
T ss_pred HHHHHHHhcccccccCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe----ChHHHHHHHHcCCCEEEEC
Confidence 34555 3455 77888877777789999999999999998766554 2356778899999876543
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=86.33 E-value=4 Score=35.96 Aligned_cols=67 Identities=21% Similarity=0.208 Sum_probs=47.7
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
++.+|+.++|.-|.++|..-...|.+++++.... .......++..|.++..+..+.+..+.++.+.+
T Consensus 5 k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~-~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~ 71 (255)
T 2q2v_A 5 KTALVTGSTSGIGLGIAQVLARAGANIVLNGFGD-PAPALAEIARHGVKAVHHPADLSDVAQIEALFA 71 (255)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSC-CHHHHHHHHTTSCCEEEECCCTTSHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc-hHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHH
Confidence 5678888889999999999999999877764433 344556677778888877655444455555444
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=86.21 E-value=4 Score=37.70 Aligned_cols=64 Identities=20% Similarity=0.232 Sum_probs=42.7
Q ss_pred HHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHH-cCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCC
Q 019047 144 TDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAV-KGYKLIVTMPASTNLERRILLRAFGAEIILTDPE 211 (347)
Q Consensus 144 ~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~-~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~ 211 (347)
+.+.+...+++|++.+|. ++|.-|...+..++. .|.+++++.. ++.|++..+.+||+.+.-..+
T Consensus 153 ~~~l~~~~~~~g~~VlV~-GaG~~g~~a~~~a~~~~g~~Vi~~~~---~~~r~~~~~~~Ga~~~i~~~~ 217 (348)
T 4eez_A 153 YKAIKVSGVKPGDWQVIF-GAGGLGNLAIQYAKNVFGAKVIAVDI---NQDKLNLAKKIGADVTINSGD 217 (348)
T ss_dssp HHHHHHHTCCTTCEEEEE-CCSHHHHHHHHHHHHTSCCEEEEEES---CHHHHHHHHHTTCSEEEEC-C
T ss_pred EeeecccCCCCCCEEEEE-cCCCccHHHHHHHHHhCCCEEEEEEC---cHHHhhhhhhcCCeEEEeCCC
Confidence 344555556788776555 567666666666665 4777665543 678899999999988765433
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=86.06 E-value=3 Score=37.58 Aligned_cols=69 Identities=14% Similarity=-0.036 Sum_probs=51.3
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 155 g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
|+..||+.+++--|.++|......|.+++++-.........+.+...|.+++.+..+.+..+.++.+.+
T Consensus 7 gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~ 75 (258)
T 4gkb_A 7 DKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGAFLDALAQRQPRATYLPVELQDDAQCRDAVA 75 (258)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHHHHHHHHhcCCCEEEEEeecCCHHHHHHHHH
Confidence 457788888889999999999999999998877666666777788888887776654443445544443
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=85.90 E-value=3.6 Score=38.56 Aligned_cols=57 Identities=12% Similarity=0.164 Sum_probs=43.2
Q ss_pred cCCCC--C-------CCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEE
Q 019047 149 SGDIT--P-------GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEII 206 (347)
Q Consensus 149 ~G~~~--~-------g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~ 206 (347)
.+.++ + |++.+|... |.-|.+++..++.+|.+++++........+++.++.+|++.+
T Consensus 166 ~~~~~~~~~~~~~~~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v 231 (366)
T 2cdc_A 166 QKRVPVWTCDDGTLNCRKVLVVGT-GPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYY 231 (366)
T ss_dssp GGGSSCCSCTTSSSTTCEEEEESC-HHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTCEEE
T ss_pred ccCccccccccccCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCCcee
Confidence 55566 6 777666666 999999999999999977766553223367788889999877
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=85.41 E-value=5.4 Score=36.89 Aligned_cols=63 Identities=21% Similarity=0.169 Sum_probs=45.5
Q ss_pred HHHHHHcC--CCCCCCeEEEEeCCChhHHHHHHHHHHc-CCcEEEEeCCCCCHHHHHHHHhcCCEEEEEC
Q 019047 143 ITDAEESG--DITPGKTVLVEPTTGNTGLGIAFVAAVK-GYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (347)
Q Consensus 143 ~~~a~~~G--~~~~g~~~vv~assGN~g~AlA~aa~~~-Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~ 209 (347)
++++..+. .+++|++.+|. ++|.-|.+.+..|+.+ |.+++++.. ++.|++.++.+||+.+...
T Consensus 158 a~~~l~~~~~~~~~g~~vlv~-GaG~vG~~a~qla~~~g~~~Vi~~~~---~~~~~~~~~~lGa~~~i~~ 223 (345)
T 3jv7_A 158 PYHAISRVLPLLGPGSTAVVI-GVGGLGHVGIQILRAVSAARVIAVDL---DDDRLALAREVGADAAVKS 223 (345)
T ss_dssp HHHHHHTTGGGCCTTCEEEEE-CCSHHHHHHHHHHHHHCCCEEEEEES---CHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHhccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEcC---CHHHHHHHHHcCCCEEEcC
Confidence 34555442 56778776665 5699999999999998 566555433 6789999999999876543
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=84.91 E-value=3.5 Score=38.83 Aligned_cols=57 Identities=21% Similarity=0.318 Sum_probs=43.0
Q ss_pred HHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCc-EEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 147 EESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYK-LIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 147 ~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~-~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
.+...+++|++++|. ++|.-|.+.+..|+.+|.+ ++++ . .++.|++.++.+||+.+.
T Consensus 186 ~~~~~~~~g~~VlV~-GaG~vG~~a~q~a~~~Ga~~Vi~~-~--~~~~~~~~a~~lGa~~vi 243 (378)
T 3uko_A 186 WNTAKVEPGSNVAIF-GLGTVGLAVAEGAKTAGASRIIGI-D--IDSKKYETAKKFGVNEFV 243 (378)
T ss_dssp HTTTCCCTTCCEEEE-CCSHHHHHHHHHHHHHTCSCEEEE-C--SCTTHHHHHHTTTCCEEE
T ss_pred HhhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEE-c--CCHHHHHHHHHcCCcEEE
Confidence 356677888886666 5699999999999999994 5544 3 245678889999997654
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=84.82 E-value=1.9 Score=40.39 Aligned_cols=61 Identities=18% Similarity=0.178 Sum_probs=44.3
Q ss_pred HHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 143 ITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 143 ~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
++.+.....+++|++.+|... |.-|.+++..|+.+|.+++++... +.+++.++.+|++.+.
T Consensus 168 a~~~l~~~~~~~g~~VlV~Ga-G~vG~~~~qlak~~Ga~Vi~~~~~---~~~~~~~~~lGa~~v~ 228 (360)
T 1piw_A 168 VYSPLVRNGCGPGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRS---SRKREDAMKMGADHYI 228 (360)
T ss_dssp HHHHHHHTTCSTTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESS---STTHHHHHHHTCSEEE
T ss_pred HHHHHHHcCCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCC---HHHHHHHHHcCCCEEE
Confidence 345555566778887666665 999999999999999986555442 3456677789997654
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=84.77 E-value=2 Score=39.10 Aligned_cols=61 Identities=28% Similarity=0.337 Sum_probs=45.5
Q ss_pred HHHHHH-cCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 143 ITDAEE-SGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 143 ~~~a~~-~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
++++.. .+ +++|++.+|...+|..|.+++..|+.+|.+++++.. ++.+++.++.+|++.+.
T Consensus 114 a~~~l~~~~-~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~---~~~~~~~~~~~ga~~~~ 175 (302)
T 1iz0_A 114 AYLALKRAQ-ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAAS---RPEKLALPLALGAEEAA 175 (302)
T ss_dssp HHHHHHHTT-CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEES---SGGGSHHHHHTTCSEEE
T ss_pred HHHHHHHhc-CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHhcCCCEEE
Confidence 344543 56 788888777777799999999999999997666654 34566677889987654
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=84.75 E-value=3.5 Score=37.02 Aligned_cols=71 Identities=14% Similarity=-0.005 Sum_probs=48.8
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVL 226 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~ 226 (347)
++.+|+.++|--|.++|......|.+++++-...........++..|.++..+..+.+..+.++.+.+..+
T Consensus 32 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 102 (273)
T 3uf0_A 32 RTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDGVKEVADEIADGGGSAEAVVADLADLEGAANVAEELA 102 (273)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTHHHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHH
Confidence 57788888899999999999999999887763322233455667778888877655443445555444433
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=84.55 E-value=3.4 Score=38.58 Aligned_cols=61 Identities=30% Similarity=0.377 Sum_probs=45.4
Q ss_pred HHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCC-cEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 143 ITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGY-KLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 143 ~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl-~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
++.+.+...+++|++.+|. ++|.-|.+.+..|+.+|. +++++.. ++.+++.++.+|++.+.
T Consensus 160 a~~al~~~~~~~g~~VlV~-GaG~vG~~aiqlak~~Ga~~Vi~~~~---~~~~~~~a~~lGa~~vi 221 (356)
T 1pl8_A 160 GIHACRRGGVTLGHKVLVC-GAGPIGMVTLLVAKAMGAAQVVVTDL---SATRLSKAKEIGADLVL 221 (356)
T ss_dssp HHHHHHHHTCCTTCEEEEE-CCSHHHHHHHHHHHHTTCSEEEEEES---CHHHHHHHHHTTCSEEE
T ss_pred HHHHHHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEECC---CHHHHHHHHHhCCCEEE
Confidence 3445555567788886665 479999999999999999 5554433 57888899999997544
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=84.05 E-value=2.6 Score=39.42 Aligned_cols=62 Identities=19% Similarity=0.193 Sum_probs=43.4
Q ss_pred HHHHHcCCCCCC------CeEEEEeCCChhHHHH-HHHH-HHcCCc-EEEEeCCCCCHHHHHHHHhcCCEEE
Q 019047 144 TDAEESGDITPG------KTVLVEPTTGNTGLGI-AFVA-AVKGYK-LIVTMPASTNLERRILLRAFGAEII 206 (347)
Q Consensus 144 ~~a~~~G~~~~g------~~~vv~assGN~g~Al-A~aa-~~~Gl~-~~I~vp~~~~~~~~~~l~~~GA~V~ 206 (347)
+++.+...+++| ++.+|... |.-|... +..| +.+|.+ ++++........|++.++.+||+.+
T Consensus 156 ~~al~~~~~~~g~~~~~~~~VlV~Ga-G~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v 226 (357)
T 2b5w_A 156 EKALEHAYASRSAFDWDPSSAFVLGN-GSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYV 226 (357)
T ss_dssp HHHHHHHHHTTTTSCCCCCEEEEECC-SHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTCEEE
T ss_pred HHHHHhcCCCCCcccCCCCEEEEECC-CHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCCccc
Confidence 334444445566 67666555 9999999 9999 999998 6666554332347788889999876
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=83.84 E-value=6 Score=34.88 Aligned_cols=70 Identities=16% Similarity=0.083 Sum_probs=49.9
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST-NLERRILLRAFGAEIILTDPEKGLRGALDKAEEIV 225 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~-~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a 225 (347)
++.+|+.++|.-|.++|..-...|.+++++-.... -......++..|.++..+..+.+..+.++.+.+..
T Consensus 8 k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 78 (252)
T 3h7a_A 8 ATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAA 78 (252)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHH
Confidence 57788888899999999999999999887755432 23445567777989887765554455555555444
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=83.44 E-value=1.9 Score=39.74 Aligned_cols=59 Identities=29% Similarity=0.390 Sum_probs=42.7
Q ss_pred HHcCCCCCCC-eEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEE
Q 019047 147 EESGDITPGK-TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (347)
Q Consensus 147 ~~~G~~~~g~-~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~ 208 (347)
.++..+++|+ +.+|...+|.-|.+++..|+.+|.+++++... +.+++.++.+|++.+..
T Consensus 141 ~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~---~~~~~~~~~lGa~~~i~ 200 (328)
T 1xa0_A 141 LEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGK---AAEHDYLRVLGAKEVLA 200 (328)
T ss_dssp HHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESC---TTCHHHHHHTTCSEEEE
T ss_pred HhhcCCCCCCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHcCCcEEEe
Confidence 3444566765 65666656999999999999999987666553 34567778899986543
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=83.40 E-value=11 Score=33.84 Aligned_cols=117 Identities=15% Similarity=0.050 Sum_probs=64.6
Q ss_pred EEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhc-----------C--C----------EEEEECCCCChH
Q 019047 159 LVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAF-----------G--A----------EIILTDPEKGLR 215 (347)
Q Consensus 159 vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~-----------G--A----------~V~~~~~~~~~~ 215 (347)
|..-++|+.|.++|..++..|++++++-. ++.+.+..... | . .+..+. ++.
T Consensus 7 V~VIGaG~mG~~iA~~la~~G~~V~l~d~---~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~---~~~ 80 (283)
T 4e12_A 7 VTVLGTGVLGSQIAFQTAFHGFAVTAYDI---NTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSD---DLA 80 (283)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCEEEEECS---SHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEES---CHH
T ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEeC---CHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeC---CHH
Confidence 56668999999999999999999887643 34443333221 2 1 112221 111
Q ss_pred HHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEc
Q 019047 216 GALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVE 295 (347)
Q Consensus 216 ~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVe 295 (347)
+ ..++ .+.....-.++... ...+..++.+.+ +++.|++...++-...-+...++ ...+++++.
T Consensus 81 ~-------~~~~-aDlVi~av~~~~~~----~~~v~~~l~~~~--~~~~il~s~tS~~~~~~la~~~~---~~~~~ig~h 143 (283)
T 4e12_A 81 Q-------AVKD-ADLVIEAVPESLDL----KRDIYTKLGELA--PAKTIFATNSSTLLPSDLVGYTG---RGDKFLALH 143 (283)
T ss_dssp H-------HTTT-CSEEEECCCSCHHH----HHHHHHHHHHHS--CTTCEEEECCSSSCHHHHHHHHS---CGGGEEEEE
T ss_pred H-------Hhcc-CCEEEEeccCcHHH----HHHHHHHHHhhC--CCCcEEEECCCCCCHHHHHhhcC---CCcceEEEc
Confidence 1 1112 24444333333222 223334555544 56778887777766666555443 345788888
Q ss_pred CCC
Q 019047 296 PAE 298 (347)
Q Consensus 296 p~~ 298 (347)
+..
T Consensus 144 ~~~ 146 (283)
T 4e12_A 144 FAN 146 (283)
T ss_dssp ECS
T ss_pred cCC
Confidence 753
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=82.99 E-value=2.4 Score=38.94 Aligned_cols=58 Identities=24% Similarity=0.359 Sum_probs=42.4
Q ss_pred HcCCCCCCC-eEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEE
Q 019047 148 ESGDITPGK-TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (347)
Q Consensus 148 ~~G~~~~g~-~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~ 208 (347)
.+..+++++ +.+|...+|..|.+.+..|+.+|.+++++.. ++.|++.++.+|++-+..
T Consensus 139 ~~~~~~~~~g~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~---~~~~~~~~~~lGa~~vi~ 197 (324)
T 3nx4_A 139 EDAGIRPQDGEVVVTGASGGVGSTAVALLHKLGYQVAAVSG---RESTHGYLKSLGANRILS 197 (324)
T ss_dssp HHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEES---CGGGHHHHHHHTCSEEEE
T ss_pred hhcccCCCCCeEEEECCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhcCCCEEEe
Confidence 333345532 4555555699999999999999998777665 356788888999986653
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=82.68 E-value=2.1 Score=39.43 Aligned_cols=58 Identities=26% Similarity=0.392 Sum_probs=42.3
Q ss_pred HHcCCCCCCC-eEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 147 EESGDITPGK-TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 147 ~~~G~~~~g~-~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
.++..+++|+ +.+|...+|.-|.+++..|+.+|.+++++... +.+++.++.+|++.+.
T Consensus 142 ~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~---~~~~~~~~~lGa~~v~ 200 (330)
T 1tt7_A 142 LEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGN---REAADYLKQLGASEVI 200 (330)
T ss_dssp HHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESS---SSTHHHHHHHTCSEEE
T ss_pred HHhcCcCCCCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHcCCcEEE
Confidence 3444566765 76666667999999999999999987666654 3456677789997654
|
| >3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV} | Back alignment and structure |
|---|
Probab=82.68 E-value=6.4 Score=38.28 Aligned_cols=97 Identities=16% Similarity=0.078 Sum_probs=62.5
Q ss_pred CCCCCchhHHHHHHHHHHHHHcCCCC-CCCeEEEEeCCChhHHHHHHHHHH-cCCcEEEEeCCCCCH-------------
Q 019047 128 MEPCRSVKDRIGYSMITDAEESGDIT-PGKTVLVEPTTGNTGLGIAFVAAV-KGYKLIVTMPASTNL------------- 192 (347)
Q Consensus 128 ~~ptGSfK~Rga~~~~~~a~~~G~~~-~g~~~vv~assGN~g~AlA~aa~~-~Gl~~~I~vp~~~~~------------- 192 (347)
.+|.|.++. ...++.+.++++.+. .+++.||+.+++--|+|+|...+. .|.+++++--+....
T Consensus 35 a~p~g~~~~--v~~qi~y~~~~~~~~~~gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~~~~~~~~~ag~~n~~ 112 (422)
T 3s8m_A 35 THPLGCERN--VLEQIAATRARGVRNDGPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSA 112 (422)
T ss_dssp CCHHHHHHH--HHHHHHHHHHTCCCSSSCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHH
T ss_pred CCchhHHHH--HHHHHHHHhhccccccCCCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCchhhhhhhcccccchhH
Confidence 345555553 334566667777773 456677777778899999999888 999988764432111
Q ss_pred HHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHH
Q 019047 193 ERRILLRAFGAEIILTDPEKGLRGALDKAEEIVL 226 (347)
Q Consensus 193 ~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~ 226 (347)
...+.++..|.+++.+..+.+-.+.++.+.+.+.
T Consensus 113 a~~~~~~~~G~~a~~i~~Dvtd~~~v~~~v~~i~ 146 (422)
T 3s8m_A 113 AFDKHAKAAGLYSKSINGDAFSDAARAQVIELIK 146 (422)
T ss_dssp HHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHH
Confidence 1235677889888777655544566655554443
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=82.59 E-value=3.4 Score=38.97 Aligned_cols=61 Identities=21% Similarity=0.205 Sum_probs=44.5
Q ss_pred HHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEE
Q 019047 144 TDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (347)
Q Consensus 144 ~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~ 208 (347)
+.+.+...+++|++.+|. ++|.-|.+.+..|+.+|.+++++.. ++.+++.++.+|++.+..
T Consensus 184 ~~al~~~~~~~g~~VlV~-GaG~vG~~aiqlak~~Ga~Vi~~~~---~~~~~~~a~~lGa~~vi~ 244 (369)
T 1uuf_A 184 YSPLRHWQAGPGKKVGVV-GIGGLGHMGIKLAHAMGAHVVAFTT---SEAKREAAKALGADEVVN 244 (369)
T ss_dssp HHHHHHTTCCTTCEEEEE-CCSHHHHHHHHHHHHTTCEEEEEES---SGGGHHHHHHHTCSEEEE
T ss_pred HHHHHhcCCCCCCEEEEE-CCCHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHcCCcEEec
Confidence 455544457788886665 5688999999999999998555543 455677888899986653
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=82.12 E-value=8.5 Score=34.29 Aligned_cols=69 Identities=19% Similarity=0.232 Sum_probs=48.9
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC--------HHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--------LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 155 g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~--------~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
+++.+|+.++|--|.++|..-...|.+++++...... ......++..|.+++.+..+.+..+.++.+.+
T Consensus 6 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 82 (274)
T 3e03_A 6 GKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAAVA 82 (274)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHHHH
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHH
Confidence 3577888888999999999999999998877654321 33455667779999887665544455555444
|
| >3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=82.11 E-value=4.7 Score=37.52 Aligned_cols=62 Identities=19% Similarity=0.102 Sum_probs=43.5
Q ss_pred HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHH----hcCCEEEEEC
Q 019047 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST--NLERRILLR----AFGAEIILTD 209 (347)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~--~~~~~~~l~----~~GA~V~~~~ 209 (347)
+.|.+.+|.++.+..-.+|.+++++.++..+|+++++.-|++. ++.-++.++ ..|+.|..+.
T Consensus 139 ~~g~l~~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~ 206 (307)
T 3tpf_A 139 WNKMQNGIAKVAFIGDSNNMCNSWLITAAILGFEISIAMPKNYKISPEIWEFAMKQALISGAKISLGY 206 (307)
T ss_dssp TTCCGGGCCEEEEESCSSHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEES
T ss_pred HhCCCCCCCEEEEEcCCCccHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 3455443445444444469999999999999999999999863 434434443 7799998876
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=82.04 E-value=4.7 Score=37.82 Aligned_cols=57 Identities=23% Similarity=0.280 Sum_probs=42.3
Q ss_pred HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
+.+.+++|++.+|. ++|.-|.+++..|+.+|.+-+|.+. .++.+++.++.+||+.+.
T Consensus 185 ~~~~~~~g~~VlV~-GaG~vG~~aiqlak~~Ga~~Vi~~~--~~~~~~~~a~~lGa~~vi 241 (373)
T 1p0f_A 185 NTAKVTPGSTCAVF-GLGGVGFSAIVGCKAAGASRIIGVG--THKDKFPKAIELGATECL 241 (373)
T ss_dssp TTTCCCTTCEEEEE-CCSHHHHHHHHHHHHHTCSEEEEEC--SCGGGHHHHHHTTCSEEE
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEC--CCHHHHHHHHHcCCcEEE
Confidence 55667888886665 4799999999999999985343333 245677888899997554
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=81.72 E-value=6 Score=37.10 Aligned_cols=61 Identities=18% Similarity=0.257 Sum_probs=45.2
Q ss_pred HHHH-HcCCCC-----CCCeEEEEeCCChhHHHHHHHHHH-cCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 144 TDAE-ESGDIT-----PGKTVLVEPTTGNTGLGIAFVAAV-KGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 144 ~~a~-~~G~~~-----~g~~~vv~assGN~g~AlA~aa~~-~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
+.+. +...++ +|++.+|...+|.-|.+.+..|+. .|.+++++.. .+.|++.++.+|++.+.
T Consensus 155 ~~al~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~---~~~~~~~~~~lGad~vi 222 (363)
T 4dvj_A 155 WEAFFDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDLTVIATAS---RPETQEWVKSLGAHHVI 222 (363)
T ss_dssp HHHHHTTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECS---SHHHHHHHHHTTCSEEE
T ss_pred HHHHHHhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeC---CHHHHHHHHHcCCCEEE
Confidence 3443 445555 677777777799999999999998 4887665543 56788899999998665
|
| >3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A* | Back alignment and structure |
|---|
Probab=81.61 E-value=18 Score=34.87 Aligned_cols=97 Identities=14% Similarity=0.050 Sum_probs=62.9
Q ss_pred CCCCCCchhHHHHHHHHHHHHHcCCCC-CCCeEEEEeCCChhHHHHHHHHHH-cCCcEEEEeCCCCC-------------
Q 019047 127 SMEPCRSVKDRIGYSMITDAEESGDIT-PGKTVLVEPTTGNTGLGIAFVAAV-KGYKLIVTMPASTN------------- 191 (347)
Q Consensus 127 ~~~ptGSfK~Rga~~~~~~a~~~G~~~-~g~~~vv~assGN~g~AlA~aa~~-~Gl~~~I~vp~~~~------------- 191 (347)
+.+|.|.-+. ...++.+.+.++.+. .+++.||+.+++.-|.|+|...+. .|.+++++--....
T Consensus 20 ~~hp~gc~~~--v~~qi~~~~~~~~~~~~gKvaLVTGas~GIG~AiA~~LA~g~GA~Vv~~~~~~~~~~~~~~~~gwyn~ 97 (405)
T 3zu3_A 20 TAHPTGCEAN--VKKQIDYVTTEGPIANGPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGWYNS 97 (405)
T ss_dssp CCCHHHHHHH--HHHHHHHHHHHCCCTTCCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCBTTBCCCHHHHHH
T ss_pred CCCCHHHHHH--HHHHHHHHHhcCCcCCCCCEEEEeCcchHHHHHHHHHHHHhcCCEEEEEeCCchhhhhhcccccchhH
Confidence 3456565443 456677777788773 346667777788899999999888 99998876443221
Q ss_pred HHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHH
Q 019047 192 LERRILLRAFGAEIILTDPEKGLRGALDKAEEIV 225 (347)
Q Consensus 192 ~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a 225 (347)
......++..|.+++.+..+.+-.+.++.+.+.+
T Consensus 98 ~~~~~~~~~~G~~a~~i~~Dvtd~~~v~~~v~~i 131 (405)
T 3zu3_A 98 AAFHKFAAQKGLYAKSINGDAFSDEIKQLTIDAI 131 (405)
T ss_dssp HHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHH
Confidence 1123356778988877765544455555555443
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=81.41 E-value=5.4 Score=37.45 Aligned_cols=57 Identities=28% Similarity=0.345 Sum_probs=42.2
Q ss_pred HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 148 ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 148 ~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
+.+.+++|++.+|.. +|.-|.+.+..|+.+|.+-+|.+. .++.+++.++.+|++.+.
T Consensus 189 ~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~--~~~~~~~~a~~lGa~~vi 245 (376)
T 1e3i_A 189 NTAKVTPGSTCAVFG-LGCVGLSAIIGCKIAGASRIIAID--INGEKFPKAKALGATDCL 245 (376)
T ss_dssp TTSCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEC--SCGGGHHHHHHTTCSEEE
T ss_pred HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHhCCcEEE
Confidence 556678888866664 799999999999999984333333 245677888899997554
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.83 E-value=9 Score=35.81 Aligned_cols=70 Identities=17% Similarity=0.183 Sum_probs=50.1
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC--------HHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--------LERRILLRAFGAEIILTDPEKGLRGALDKAEEIV 225 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~--------~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a 225 (347)
++.+|+.++|--|.++|......|.+++++.....+ ......++..|.++..+..+.+..+.++.+.+..
T Consensus 46 k~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~ 123 (346)
T 3kvo_A 46 CTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAAVEKA 123 (346)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHH
T ss_pred CEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHH
Confidence 577888888999999999999999998887655332 2345667888999887765554445555554433
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=80.57 E-value=4.2 Score=35.82 Aligned_cols=71 Identities=17% Similarity=0.098 Sum_probs=44.9
Q ss_pred CCeEEEEeCC--ChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHH
Q 019047 155 GKTVLVEPTT--GNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIV 225 (347)
Q Consensus 155 g~~~vv~ass--GN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a 225 (347)
+++.+|+.++ |.-|.++|......|.+++++........+.+.+...+.++..+..+.+..+.++.+.+..
T Consensus 14 ~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 86 (271)
T 3ek2_A 14 GKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASL 86 (271)
T ss_dssp TCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHH
Confidence 3577777766 8899999999999999988876654445555555433334544443333345555554433
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=80.37 E-value=7.9 Score=33.87 Aligned_cols=67 Identities=16% Similarity=0.224 Sum_probs=45.3
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
++.+|+.++|.-|.++|......|.+++++.... .......++..|.++..+..+.+..+.++.+.+
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 74 (249)
T 2ew8_A 8 KLAVITGGANGIGRAIAERFAVEGADIAIADLVP-APEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGK 74 (249)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC-CHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCc-hhHHHHHHHhcCCcEEEEEeecCCHHHHHHHHH
Confidence 5778888899999999999999999877765432 122223566778887766554443455554443
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=80.32 E-value=6.7 Score=35.09 Aligned_cols=69 Identities=17% Similarity=0.025 Sum_probs=45.3
Q ss_pred CeEEEEeCCCh--hHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHH
Q 019047 156 KTVLVEPTTGN--TGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIV 225 (347)
Q Consensus 156 ~~~vv~assGN--~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a 225 (347)
++.+|+..+|+ -|.++|..-...|.+++++.... ...+.+.+...+.++..+..+.+..+.++.+.+..
T Consensus 27 k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~-~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 97 (280)
T 3nrc_A 27 KKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ-FKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVEL 97 (280)
T ss_dssp CEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT-CHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch-HHHHHHHHHHhcCCceEEEeecCCHHHHHHHHHHH
Confidence 46677777777 99999999889999987776654 56667777655545555444343345555544433
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=80.14 E-value=6 Score=35.75 Aligned_cols=68 Identities=13% Similarity=0.166 Sum_probs=47.5
Q ss_pred CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHhcCCEEEEECCCCChHHHHHHHHH
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--LERRILLRAFGAEIILTDPEKGLRGALDKAEE 223 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~--~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~ 223 (347)
++.+|+.++|--|.++|......|.++++....... ......++..|.+++.+..+.+..+.++.+.+
T Consensus 48 k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 117 (291)
T 3ijr_A 48 KNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQ 117 (291)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHH
Confidence 477888888999999999999999998876654321 22344567788888877655544455554443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 347 | ||||
| d1z7wa1 | 320 | c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (C | 2e-64 | |
| d1o58a_ | 293 | c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cystei | 2e-56 | |
| d1jbqa_ | 355 | c.79.1.1 (A:) Cystathionine beta-synthase {Human ( | 8e-53 | |
| d1fcja_ | 302 | c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cystei | 8e-52 | |
| d1y7la1 | 310 | c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (C | 4e-51 | |
| d1ve1a1 | 302 | c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (C | 7e-51 | |
| d2bhsa1 | 292 | c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (C | 7e-50 | |
| d1wkva1 | 382 | c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (C | 2e-41 | |
| d1v71a1 | 318 | c.79.1.1 (A:6-323) Hypothetical protein C320.14 (S | 9e-32 | |
| d1tdja1 | 331 | c.79.1.1 (A:5-335) Threonine deaminase {Escherichi | 5e-31 | |
| d1ve5a1 | 310 | c.79.1.1 (A:2-311) Threonine deaminase {Thermus th | 9e-26 | |
| d1tyza_ | 338 | c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de | 1e-25 | |
| d1j0aa_ | 325 | c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de | 9e-23 | |
| d1f2da_ | 341 | c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de | 1e-22 | |
| d1v8za1 | 386 | c.79.1.1 (A:1-386) Tryptophan synthase, beta-subun | 1e-21 | |
| d1e5xa_ | 477 | c.79.1.1 (A:) Threonine synthase {Mouse-ear cress | 8e-21 | |
| d1p5ja_ | 319 | c.79.1.1 (A:) L-serine dehydratase {Human (Homo sa | 4e-18 | |
| d1qopb_ | 390 | c.79.1.1 (B:) Tryptophan synthase, beta-subunit {S | 2e-17 | |
| d1v7ca_ | 351 | c.79.1.1 (A:) Threonine synthase {Thermus thermoph | 1e-15 |
| >d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 320 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 204 bits (520), Expect = 2e-64
Identities = 164/262 (62%), Positives = 213/262 (81%), Gaps = 10/262 (3%)
Query: 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDIT 153
IA+DVT+LIG TP+VYLN V EGCVG VAAKLE MEPC SVKDRIG+SMI+DAE+ G I
Sbjct: 3 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIK 62
Query: 154 PGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKG 213
PG++VL+EPT+GNTG+G+AF AA KGYKLI+TMPAS + ERRI+L AFG E++LTDP KG
Sbjct: 63 PGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKG 122
Query: 214 LRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGG 273
++GA+ KAEEI+ TPN YM QQF+N AN KIH+++TGPEIW+ T G +D FV+ IGTGG
Sbjct: 123 MKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGG 182
Query: 274 TITGTGRFLKMMNKEIKVVGVEPAERSVISGEN----------AGYVPSILDVQLLDEVI 323
TITG G++LK N +K+ GVEP E +++SG AG++PS+L+V L+DEV+
Sbjct: 183 TITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDEVV 242
Query: 324 KVTNDEAVNMARRLALEEGLLV 345
+V++DE+++MAR+LAL+EGLLV
Sbjct: 243 QVSSDESIDMARQLALKEGLLV 264
|
| >d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Thermotoga maritima [TaxId: 2336]
Score = 183 bits (465), Expect = 2e-56
Identities = 115/261 (44%), Positives = 161/261 (61%), Gaps = 19/261 (7%)
Query: 96 EDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPG 155
+ +LIG TP+V L+ + + KLE P SVKDR MI DAE+ G + G
Sbjct: 2 HMMERLIGSTPIVRLDSID----SRIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNG 57
Query: 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLR 215
+VEPT+GN G+ IA + A +G+++I+TMP + ++ERR +L+ GAE++LT E G++
Sbjct: 58 ---IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMK 114
Query: 216 GALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTI 275
GA++KA EI A+M QF+N N+ H +TGPEI + +D FVA +GTGGTI
Sbjct: 115 GAVEKALEIS-RETGAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTI 173
Query: 276 TGTGRFLK-MMNKEIKVVGVEPAERSVISGEN----------AGYVPSILDVQLLDEVIK 324
+G GR LK +K+V VEPA+ V+SG AG+VP ILD ++DEVI
Sbjct: 174 SGVGRVLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGIGAGFVPKILDRSVIDEVIT 233
Query: 325 VTNDEAVNMARRLALEEGLLV 345
V ++EA MAR LA +EGLLV
Sbjct: 234 VEDEEAYEMARYLAKKEGLLV 254
|
| >d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 355 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Cystathionine beta-synthase species: Human (Homo sapiens) [TaxId: 9606]
Score = 176 bits (446), Expect = 8e-53
Identities = 98/272 (36%), Positives = 146/272 (53%), Gaps = 21/272 (7%)
Query: 94 IAEDVTQLIGRTPMVYLNKVTE--GCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGD 151
I D+ + IG TPMV +NK+ + G + AK E SVKDRI MI DAE G
Sbjct: 34 ILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGT 93
Query: 152 ITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPE 211
+ PG T+ +EPT+GNTG+G+A AAV+GY+ I+ MP + E+ +LRA GAEI+ T
Sbjct: 94 LKPGDTI-IEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTN 152
Query: 212 KGLRGALDKA---EEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAA 268
+ PN+++ Q+ N +N H+D+T EI + G +D+ VA+
Sbjct: 153 ARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVAS 212
Query: 269 IGTGGTITGTGRFLKMMNKEIKVVGVEPAERSV---------------ISGENAGYVPSI 313
+GTGGTITG R LK +++GV+P + + G ++P++
Sbjct: 213 VGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTTYEVEGIGYDFIPTV 272
Query: 314 LDVQLLDEVIKVTNDEAVNMARRLALEEGLLV 345
LD ++D+ K ++EA AR L +EGLL
Sbjct: 273 LDRTVVDKWFKSNDEEAFTFARMLIAQEGLLC 304
|
| >d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]} Length = 302 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Salmonella typhimurium [TaxId: 90371]
Score = 171 bits (434), Expect = 8e-52
Identities = 126/271 (46%), Positives = 177/271 (65%), Gaps = 23/271 (8%)
Query: 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDIT 153
I ED + IG TP+V LN++ G + AK+ES P SVK RIG +MI DAE+ G +
Sbjct: 3 IYEDNSLTIGHTPLVRLNRIGNG---RILAKVESRNPSFSVKCRIGANMIWDAEKRGVLK 59
Query: 154 PGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKG 213
PG + VEPT GNTG+ +A+VAA +GYKL +TMP + ++ERR LL+A GA ++LT+ KG
Sbjct: 60 PGVEL-VEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKG 118
Query: 214 LRGALDKAEEIVLNT-PNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTG 272
++GA+ KAEEIV + + QQF N AN +IH +TGPEIWEDT G VD+F++ +GTG
Sbjct: 119 MKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVGTG 178
Query: 273 GTITGTGRFLKM--MNKEIKVVGVEPAERSV----------------ISGENAGYVPSIL 314
GT+TG R++K ++ V VEP + V I G AG++P L
Sbjct: 179 GTLTGVTRYIKGTKGKTDLITVAVEPTDSPVIAQALAGEEIKPGPHKIQGIGAGFIPGNL 238
Query: 315 DVQLLDEVIKVTNDEAVNMARRLALEEGLLV 345
D++L+D+V+ +TN+EA++ ARRL EEG+L
Sbjct: 239 DLKLIDKVVGITNEEAISTARRLMEEEGILA 269
|
| >d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]} Length = 310 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Haemophilus influenzae [TaxId: 727]
Score = 170 bits (430), Expect = 4e-51
Identities = 119/270 (44%), Positives = 164/270 (60%), Gaps = 21/270 (7%)
Query: 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDIT 153
I D + IG TP+V L NV K+E P SVK RIG +M+ AE+ G +T
Sbjct: 2 IYADNSYSIGNTPLVRLKHFGHNG--NVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTLT 59
Query: 154 PGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKG 213
GK + V+ T+GNTG+ +A+VAA +GYK+ +TMP + +LER+ LL G ++LT+ KG
Sbjct: 60 KGKEI-VDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKG 118
Query: 214 LRGALDKAEEIVL-NTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTG 272
++GA+ KAEEIV + M +QF+N AN +IH ++TGPEIW+DT G VD+ VA +GTG
Sbjct: 119 MKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGTG 178
Query: 273 GTITGTGRFLK-MMNKEIKVVGVEPAERSVIS----------------GENAGYVPSILD 315
G+ITG R +K K+I V VEP E VIS G AG++P LD
Sbjct: 179 GSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAGEEVKPGPHKIQGIGAGFIPKNLD 238
Query: 316 VQLLDEVIKVTNDEAVNMARRLALEEGLLV 345
+ ++D V V +D A+ ARRL EEG+L
Sbjct: 239 LSIIDRVETVDSDTALATARRLMAEEGILA 268
|
| >d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermus thermophilus [TaxId: 274]} Length = 302 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Thermus thermophilus [TaxId: 274]
Score = 169 bits (428), Expect = 7e-51
Identities = 122/259 (47%), Positives = 170/259 (65%), Gaps = 12/259 (4%)
Query: 98 VTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGK- 156
V IG+TP+V L KV E + V KLE + P S+KDR + MI DAEE G + PG
Sbjct: 3 VEGAIGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSG 62
Query: 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRG 216
V+VEPT+GNTG+G+A +AA +GY+LI+TMPA + ER+ +L+AFGAE++LTDPE+ +
Sbjct: 63 QVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRMLA 122
Query: 217 ALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTIT 276
A ++A + A+M QF N AN++ H+++TGPE++E G +D FV GTGGTIT
Sbjct: 123 AREEALRLK-EELGAFMPDQFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTIT 181
Query: 277 GTGRFLKMMNKEIKVVGVEPAERSVIS----------GENAGYVPSILDVQLLDEVIKVT 326
G GR+LK +KV+ VEPA +V+S G G++P LD+ LLD VI+V
Sbjct: 182 GVGRYLKERIPHVKVIAVEPARSNVLSGGKMGQHGFQGMGPGFIPENLDLSLLDGVIQVW 241
Query: 327 NDEAVNMARRLALEEGLLV 345
++A +ARRLA EEGL +
Sbjct: 242 EEDAFPLARRLAREEGLFL 260
|
| >d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Escherichia coli, isoform B (CysM) [TaxId: 562]
Score = 166 bits (421), Expect = 7e-50
Identities = 104/251 (41%), Positives = 153/251 (60%), Gaps = 5/251 (1%)
Query: 98 VTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKT 157
+ Q IG TP+V L ++ V KLE P SVKDR SMI +AE+ G+I PG
Sbjct: 3 LEQTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGDV 62
Query: 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGA 217
+ +E T+GNTG+ +A +AA+KGY++ + MP + + ERR +RA+GAE+IL E+G+ GA
Sbjct: 63 L-IEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGA 121
Query: 218 LDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITG 277
D A E+ N + QF+N N H+ +TGPEIW+ T G + FV+++GT GTITG
Sbjct: 122 RDLALEMA-NRGEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITG 180
Query: 278 TGRFLKMMNKEIKVVGVEPAERSVISG---ENAGYVPSILDVQLLDEVIKVTNDEAVNMA 334
RF++ +K + +VG++P E S I G Y+P I + L+DEV+ + +A N
Sbjct: 181 VSRFMREQSKPVTIVGLQPEEGSSIPGIRRWPTEYLPGIFNASLVDEVLDIHQRDAENTM 240
Query: 335 RRLALEEGLLV 345
R LA+ EG+
Sbjct: 241 RELAVREGIFC 251
|
| >d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Archaeon Aeropyrum pernix [TaxId: 56636]
Score = 146 bits (370), Expect = 2e-41
Identities = 64/267 (23%), Positives = 111/267 (41%), Gaps = 20/267 (7%)
Query: 91 GVNIAEDVTQLIGR---TPMVYLNKVTE-GCVGNVAAKLESMEPC-RSVKDRIGYSMITD 145
G + R TP+V G V KLE P SVKDR +I+
Sbjct: 79 GEMVFPSPLDFFERGKPTPLVRSRLQLPNGV--RVWLKLEWYNPFSLSVKDRPAVEIISR 136
Query: 146 AEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEI 205
+ G V + T+ N G+ ++ VA + GY+ V +P + ++L R GA++
Sbjct: 137 LSR--RVEKGSLV-ADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQV 193
Query: 206 ILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLG---CV 262
I+ L + + QF N AN + H T EI+ + +
Sbjct: 194 IVDPEAPSTVHLLPRVMKDS-KNEGFVHVNQFYNDANFEAHMRGTAREIFVQSRRGGLAL 252
Query: 263 DIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG----ENAGYVPSILDVQL 318
++GT G ++ +L+ ++ I+ V V+PA+ I G E ++LD+
Sbjct: 253 RGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPGIRRVETGMLWINMLDI-- 310
Query: 319 LDEVIKVTNDEAVNMARRLALEEGLLV 345
+ +VT +EA+ +A +GL++
Sbjct: 311 SYTLAEVTLEEAMEAVVEVARSDGLVI 337
|
| >d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 119 bits (298), Expect = 9e-32
Identities = 47/273 (17%), Positives = 107/273 (39%), Gaps = 31/273 (11%)
Query: 95 AEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITP 154
+E + + +TP++ + V + V V K E+ + + K R + ++
Sbjct: 12 SERIKKFANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLN----EAQ 67
Query: 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGL 214
K ++ ++GN IA A + G + MP + + +G ++I+ D K
Sbjct: 68 RKAGVLTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDRYKDD 127
Query: 215 RGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGT 274
R A+EI + +D+ ++ + E++E+ +G +D +G GG
Sbjct: 128 RE--KMAKEIS-EREGLTIIPPYDHP-HVLAGQGTAAKELFEE-VGPLDALFVCLGGGGL 182
Query: 275 ITGTGRFLKMMNKEIKVVGVEPAER----------------------SVISGENAGYVPS 312
++G+ + +V GVEP ++ G
Sbjct: 183 LSGSALAARHFAPNCEVYGVEPEAGNDGQQSFRKGSIVHIDTPKTIADGAQTQHLGNYTF 242
Query: 313 ILDVQLLDEVIKVTNDEAVNMARRLALEEGLLV 345
+ + +D+++ V+++E ++ + A ++V
Sbjct: 243 SIIKEKVDDILTVSDEELIDCLKFYAARMKIVV 275
|
| >d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]} Length = 331 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine deaminase species: Escherichia coli [TaxId: 562]
Score = 117 bits (294), Expect = 5e-31
Identities = 53/270 (19%), Positives = 93/270 (34%), Gaps = 31/270 (11%)
Query: 98 VTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKT 157
V + TP+ + K++ + K E +P S K R Y+M+ E
Sbjct: 21 VYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQ----KAH 76
Query: 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGA 217
++ + GN G+AF +A G K ++ MP +T + +R FG E++L
Sbjct: 77 GVITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLLHGANFDEA-- 134
Query: 218 LDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITG 277
+ FD+ I T +D +G GG G
Sbjct: 135 -KAKAIELSQQQGFTWVPPFDHPMV--IAGQGTLALELLQQDAHLDRVFVPVGGGGLAAG 191
Query: 278 TGRFLKMMNKEIKVVGVEPAE-----RSVISGE-----------------NAGYVPSILD 315
+K + +IKV+ VE + ++ +G G L
Sbjct: 192 VAVLIKQLMPQIKVIAVEAEDSACLKAALDAGHPVDLPRVGLFAEGVAVKRIGDETFRLC 251
Query: 316 VQLLDEVIKVTNDEAVNMARRLALEEGLLV 345
+ LD++I V +D + L + +
Sbjct: 252 QEYLDDIITVDSDAICAAMKDLFEDVRAVA 281
|
| >d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus thermophilus [TaxId: 274]} Length = 310 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine deaminase species: Thermus thermophilus [TaxId: 274]
Score = 103 bits (256), Expect = 9e-26
Identities = 48/276 (17%), Positives = 94/276 (34%), Gaps = 35/276 (12%)
Query: 95 AEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITP 154
+ RTP++ + + K E ++ S K R S E
Sbjct: 10 FRRIAPYTHRTPLLTSRLLDGLLGKRLLLKAEHLQKTGSFKARGALSKALALE------- 62
Query: 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGL 214
L+ ++GN G+A+ A V G K +V MP + ++ RA+GAE++
Sbjct: 63 NPKGLLAVSSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVDRGVTAKN 122
Query: 215 RGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWE--DTLGCVDIFVAAIGTG 272
R + +A + + FD+ + + + + +A +G G
Sbjct: 123 REEVARALQ---EETGYALIHPFDDPLVIAGQGTAGLELLAQAGRMGVFPGAVLAPVGGG 179
Query: 273 GTITGTGRFLKMMNKEIKVVGVEPAERSV-----------------------ISGENAGY 309
G + G +K ++ V+GVEP + + G
Sbjct: 180 GLLAGLATAVKALSPTTLVLGVEPEAADDAKRSLEAGRILRLEAPPRTRADGVRTLSLGE 239
Query: 310 VPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLV 345
+ + +D ++ V+ + + R L +V
Sbjct: 240 RTFPILRERVDGILTVSEEALLEAERLLFTRTKQVV 275
|
| >d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Pseudomonas sp., strain ACP [TaxId: 306]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: 1-aminocyclopropane-1-carboxylate deaminase species: Pseudomonas sp., strain ACP [TaxId: 306]
Score = 103 bits (256), Expect = 1e-25
Identities = 48/285 (16%), Positives = 83/285 (29%), Gaps = 40/285 (14%)
Query: 98 VTQLIGRTPMVYLNKVTE--GCVGNVAAKLESMEPCRSV---KDRIGYSMITDAEESGDI 152
G TP+ L ++++ G ++ AK E + K R +I +A G
Sbjct: 9 YPLTFGPTPIQPLARLSKHLGGKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEALAQGCD 68
Query: 153 TPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT---- 208
T V + N +A VAA G K ++ N + R ++
Sbjct: 69 TL---VSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGAD 125
Query: 209 ------DPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTL--- 259
+ G R + + A E V + G
Sbjct: 126 VRLVPDGFDIGFRRSWEDALESVRAAGGKPYAIPAGCSDHPLGGLGFVGFAEEVRAQEAE 185
Query: 260 --GCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGENAGYVPS----- 312
D V TG T G + +V+GV+ + + + E +
Sbjct: 186 LGFKFDYVVVCSVTGSTQAGMVVGFAADGRADRVIGVDASAKPAQTREQITRIARQTAEK 245
Query: 313 ------------ILDVQLLDEVIKVTNDEAVNMARRLALEEGLLV 345
+LD + + N+ + R A EG+L
Sbjct: 246 VGLERDIMRADVVLDERFAGPEYGLPNEGTLEAIRLCARTEGMLT 290
|
| >d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 325 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: 1-aminocyclopropane-1-carboxylate deaminase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 94.8 bits (234), Expect = 9e-23
Identities = 46/267 (17%), Positives = 79/267 (29%), Gaps = 22/267 (8%)
Query: 98 VTQLIGRTPMVYLNKVTEGCVGNVAAKLESM--EPCRSVKDRIGYSMITDAEESGDITPG 155
V + TP+ YL ++ +V K + + K R ++ DA G
Sbjct: 15 VELIPWETPIQYLPNISREIGADVYIKRDDLTGLGIGGNKIRKLEYLLGDALSKGADVV- 73
Query: 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLR 215
+ V N A G I+ + L+ LL K
Sbjct: 74 --ITVGAVHSNHAFVTGLAAKKLGLDAILVLRGKEELKGNYLLDKIMGIETRVYDAKDSF 131
Query: 216 GALDKAEEIV----LNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGT 271
+ AEEI Y+ + + EI + D V A G+
Sbjct: 132 ELMKYAEEIAEELKREGRKPYVIPPGGASPIGTLGYVRAVGEIATQSEVKFDSIVVAAGS 191
Query: 272 GGTITGTGRFLKMMNKEIKVVGVEPA-----ERSVISGENA--------GYVPSILDVQL 318
GGT+ G L ++N++I+ VG+ S +
Sbjct: 192 GGTLAGLSLGLSILNEDIRPVGIAVGRFGEVMTSKLDNLIKEAAELLGVKVEVRPELYDY 251
Query: 319 LDEVIKVTNDEAVNMARRLALEEGLLV 345
E + R++ EG+++
Sbjct: 252 SFGEYGKITGEVAQIIRKVGTREGIIL 278
|
| >d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Yeast (Hansenula saturnus) [TaxId: 4906]} Length = 341 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: 1-aminocyclopropane-1-carboxylate deaminase species: Yeast (Hansenula saturnus) [TaxId: 4906]
Score = 94.7 bits (234), Expect = 1e-22
Identities = 45/293 (15%), Positives = 78/293 (26%), Gaps = 41/293 (13%)
Query: 91 GVNIAEDVTQLIGRTPMVYLNKVTE--GCVGNVAAKLESMEPCRSV---KDRIGYSMITD 145
GV G +P+ LN++++ G NV AK E + K R ++ D
Sbjct: 2 GVAKFAKYPLTFGPSPISNLNRLSQHLGSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPD 61
Query: 146 AEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEI 205
E V + N +A +AA G K ++ +
Sbjct: 62 IVEGD---YTHLVSIGGRQSNQTRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGN 118
Query: 206 ILTDP-------------EKGLRGALDKAEEIVLNT--PNAYMFQQFDNMANLKIHFDST 250
I + G+R + A + + + + + F
Sbjct: 119 IELSRIMGADVRVIEDGFDIGMRKSFANALQELEDAGHKPYPIPAGCSEHKYGGLGFVGF 178
Query: 251 GPEIWEDTL---GCVDIFVAAIGTGGTITGTGRFLK-----MMNKEIKVVGVEPAERSVI 302
E+ + D V TG T G + I +
Sbjct: 179 ADEVINQEVELGIKFDKIVVCCVTGSTTAGILAGMAQYGRQDDVIAIDASFTSEKTKEQT 238
Query: 303 SGEN----------AGYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLV 345
+ LD + V N+ + R A +EG+L
Sbjct: 239 LRIANNTAKLIGVEHEFKDFTLDTRFAYPCYGVPNEGTIEAIRTCAEQEGVLT 291
|
| >d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 386 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Tryptophan synthase, beta-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 92.6 bits (229), Expect = 1e-21
Identities = 53/300 (17%), Positives = 101/300 (33%), Gaps = 60/300 (20%)
Query: 102 IGR-TPMVYLNKVTEGCVG-NVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVL 159
GR TP+ Y ++TE G + K E + + K A+ G ++
Sbjct: 47 AGRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGKTR----LI 102
Query: 160 VEPTTGNTGLGIAFVAAVKGYKLIVTMPA---STNLERRILLRAFGAEIILTDP-EKGLR 215
E G G+ A A+ G K+ + M A ++ GA +I + + L+
Sbjct: 103 AETGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLK 162
Query: 216 GALDKAEEIVLNTP------NAYMFQQFDNMANLKIHFDSTGPEI---WEDTLGCVDIFV 266
A+++A + T + ++ G E + G + +
Sbjct: 163 DAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVI 222
Query: 267 AAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGEN-------------------- 306
A GG+ + + +K++K+VGVE + + SG++
Sbjct: 223 VACVGGGSNAMGIFYPFVNDKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFL 282
Query: 307 ---------------------AGYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLV 345
G + L E + VT++EA+ L+ EG++
Sbjct: 283 QDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYVTVTDEEALKAFHELSRTEGIIP 342
|
| >d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 477 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine synthase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 90.8 bits (224), Expect = 8e-21
Identities = 33/282 (11%), Positives = 80/282 (28%), Gaps = 38/282 (13%)
Query: 98 VTQLIGRTPMVYLNKVTE--GCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPG 155
V+ G + + + + + + ++ K + S KD +++ +
Sbjct: 115 VSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRP 174
Query: 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLR 215
+ +TG+T ++ A G IV +P + + L++ + +
Sbjct: 175 VVGVGCASTGDTSAALSAYCASAGIPSIVFLP-ANKISMAQLVQPIANGAFVLSIDTDFD 233
Query: 216 GALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTI 275
G + EI N L+ + + + D + G G I
Sbjct: 234 GCMKLIREI--TAELPIYLANSLNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNI 291
Query: 276 TGTGRFLKMMNKEIKVVGVEPAERSVISGENAGYVPSIL--------------------- 314
+ KM +E+ +V P +
Sbjct: 292 YAFYKGFKMC-QELGLVDRIPRMVCAQAANANPLYLHYKSGWKDFKPMTASTTFASAIQI 350
Query: 315 -----------DVQLLDEVIKVTNDEAVNMARRLALEEGLLV 345
++ + +++ +E + A A G+ +
Sbjct: 351 GDPVSIDRAVYALKKCNGIVEEATEEELMDAMAQADSTGMFI 392
|
| >d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 319 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: L-serine dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Score = 81.8 bits (200), Expect = 4e-18
Identities = 41/267 (15%), Positives = 77/267 (28%), Gaps = 29/267 (10%)
Query: 101 LIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLV 160
L +TP+ +++ +V K++S +P S K R + G V
Sbjct: 4 LHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQ-----GCAHFV 58
Query: 161 EPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDK 220
+ GN G+ A+ A G + +P +T L+ GA +
Sbjct: 59 CSSAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATCKVVGELLDEAFE--L 116
Query: 221 AEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGR 280
A+ + N P FD+ + H I ++ G G
Sbjct: 117 AKALAKNNPGWVYIPPFDDPLIWEGHASIVKELKETLWEKPGAIALSVGGGGLLCGVVQG 176
Query: 281 FLKMMNKEIKVVGVEPAERSVISGENAGYVPSILDV----------------------QL 318
+ ++ V+ +E L +
Sbjct: 177 LQECGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAKALGVKTVGSQALKLFQEH 236
Query: 319 LDEVIKVTNDEAVNMARRLALEEGLLV 345
+++ EAV + +E +LV
Sbjct: 237 PIFSEVISDQEAVAAIEKFVDDEKILV 263
|
| >d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]} Length = 390 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Tryptophan synthase, beta-subunit species: Salmonella typhimurium [TaxId: 90371]
Score = 79.9 bits (196), Expect = 2e-17
Identities = 46/299 (15%), Positives = 87/299 (29%), Gaps = 59/299 (19%)
Query: 102 IGR-TPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLV 160
GR T + +T G + K E + + K A+ G
Sbjct: 52 AGRPTALTKCQNITAGTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGA 111
Query: 161 EPTTGNTGLGIAFVAAVKGYKLIVTMPASTN---LERRILLRAFGAEIILTDP-EKGLRG 216
G+ A +A+ G K + M A +R GAE+I L+
Sbjct: 112 G----QHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKD 167
Query: 217 ALDKA-EEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEI--------WEDTLGCVDIFVA 267
A ++A + + A+ + + D G + V
Sbjct: 168 ACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVI 227
Query: 268 AIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGENAGYV----------------- 310
A GG+ + + + ++GVEP + +GE+ +
Sbjct: 228 ACVGGGSNAIGMFADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQ 287
Query: 311 ------------------------PSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLV 345
+ L+ + + +T+DEA+ + L EG++
Sbjct: 288 TADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIP 346
|
| >d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]} Length = 351 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine synthase species: Thermus thermophilus [TaxId: 274]
Score = 74.7 bits (182), Expect = 1e-15
Identities = 52/275 (18%), Positives = 86/275 (31%), Gaps = 37/275 (13%)
Query: 98 VTQLIGRTPMVYLNKVT--EGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPG 155
++ L G TP++ L + AK E + P S KDR ++ A E G
Sbjct: 22 ISLLEGSTPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGMTLAVSKAVE-----GG 76
Query: 156 KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS-TNLERRILLRAFGAEIILTDPEKGL 214
+ +TGNT A AA G IV +PA L + GA I+ +
Sbjct: 77 AQAVACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVEGNFD- 135
Query: 215 RGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGT 274
D T + + + E+ ++ +G G
Sbjct: 136 ----DALRLTQKLTEAFPVALVNSVNPHRLEGQKTLAFEVVDELGDAPHYHALPVGNAGN 191
Query: 275 IT------GTGRFLKMMNKEIKVVGVEPAERSVISGENAGYVPSI--------------- 313
IT L + +++G + A + + P
Sbjct: 192 ITAHWMGYKAYHALGKAKRLPRMLGFQAAGAAPLVLGRPVERPETLATAIRIGNPASWQG 251
Query: 314 ---LDVQLLDEVIKVTNDEAVNMARRLALEEGLLV 345
+ + VT++E + R LA EEG+
Sbjct: 252 AVRAKEESGGVIEAVTDEEILFAYRYLAREEGIFC 286
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 347 | |||
| d1z7wa1 | 320 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 100.0 | |
| d2bhsa1 | 292 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 100.0 | |
| d1ve1a1 | 302 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 100.0 | |
| d1o58a_ | 293 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 100.0 | |
| d1jbqa_ | 355 | Cystathionine beta-synthase {Human (Homo sapiens) | 100.0 | |
| d1v71a1 | 318 | Hypothetical protein C320.14 (SPCC320.14, SPCC330. | 100.0 | |
| d1y7la1 | 310 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 100.0 | |
| d1ve5a1 | 310 | Threonine deaminase {Thermus thermophilus [TaxId: | 100.0 | |
| d1p5ja_ | 319 | L-serine dehydratase {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1tdja1 | 331 | Threonine deaminase {Escherichia coli [TaxId: 562] | 100.0 | |
| d1wkva1 | 382 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 100.0 | |
| d1fcja_ | 302 | O-acetylserine sulfhydrylase (Cysteine synthase) { | 100.0 | |
| d1qopb_ | 390 | Tryptophan synthase, beta-subunit {Salmonella typh | 100.0 | |
| d1v7ca_ | 351 | Threonine synthase {Thermus thermophilus [TaxId: 2 | 100.0 | |
| d1v8za1 | 386 | Tryptophan synthase, beta-subunit {Archaeon Pyroco | 100.0 | |
| d1e5xa_ | 477 | Threonine synthase {Mouse-ear cress (Arabidopsis t | 100.0 | |
| d1j0aa_ | 325 | 1-aminocyclopropane-1-carboxylate deaminase {Archa | 100.0 | |
| d1tyza_ | 338 | 1-aminocyclopropane-1-carboxylate deaminase {Pseud | 100.0 | |
| d1f2da_ | 341 | 1-aminocyclopropane-1-carboxylate deaminase {Yeast | 100.0 | |
| d1vb3a1 | 428 | Threonine synthase {Escherichia coli [TaxId: 562]} | 99.8 | |
| d1kl7a_ | 511 | Threonine synthase {Baker's yeast (Saccharomyces c | 99.21 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.78 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.34 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 95.98 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.88 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 95.73 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 95.51 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 95.47 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 95.44 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 95.44 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 95.27 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 95.14 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 95.01 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 95.01 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 94.66 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 93.86 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 93.85 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 93.83 | |
| d1vp8a_ | 190 | Hypothetical protein AF0103 {Archaeoglobus fulgidu | 93.79 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 93.68 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 93.3 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 93.18 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 92.41 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 90.04 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 89.98 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 89.84 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 89.83 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 89.22 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 89.07 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 88.0 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 87.36 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 87.34 | |
| d1t57a_ | 186 | Hypothetical protein MTH1675 {Methanobacterium the | 87.09 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 86.19 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 85.78 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 85.35 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 84.97 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 84.73 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 84.42 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 84.05 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 83.6 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 82.83 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 82.81 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 82.08 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 81.39 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 81.37 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 80.48 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 80.18 |
| >d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=5.3e-54 Score=409.79 Aligned_cols=254 Identities=65% Similarity=1.082 Sum_probs=231.9
Q ss_pred hhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHH
Q 019047 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (347)
Q Consensus 94 ~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~ 173 (347)
+.++++..+|+|||+++++|.+.+|++||+|+|++|||||||||+|.+++.+|+++|.++++...|+++|+||||.|+|+
T Consensus 3 i~~~i~~~iG~TPLv~~~~l~~~~g~~i~~K~E~~nptGSfKdRgA~~~i~~a~~~g~~~~~~~~vv~aSsGN~g~a~A~ 82 (320)
T d1z7wa1 3 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAF 82 (320)
T ss_dssp CCSSGGGGSSCCCEEECCGGGTTCSSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHH
T ss_pred hhhhhhhhcCCCCeEECCCcccccCCEEEEEeCCCCCccCcHHHHHHHHHHHHHHcCCCCCCCceEEeeCCchHHHHHHH
Confidence 34578899999999999999999999999999999999999999999999999999998887788999999999999999
Q ss_pred HHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHH
Q 019047 174 VAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPE 253 (347)
Q Consensus 174 aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~E 253 (347)
+|+.+|++|+||||+++++.|+++++.+||+|+.++...+......++.+...+.++.+++++|+|+.++..||+|+|.|
T Consensus 83 ~a~~~g~~~~iv~p~~~~~~k~~~i~~~Ga~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~g~~t~~~E 162 (320)
T d1z7wa1 83 TAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPE 162 (320)
T ss_dssp HHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHCTTEEECCTTTCTHHHHHHHHTHHHH
T ss_pred HHHhhccceEEeehhhhhhhhhhhhhccCcceEEeeccccccccchhHHHHHHhCCCceecccccccchHHHhhhhHHHH
Confidence 99999999999999999999999999999999999864434455556666666667999999999999888899999999
Q ss_pred HHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccccC----------CCCCCCchhccccccCeEE
Q 019047 254 IWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG----------ENAGYVPSILDVQLLDEVI 323 (347)
Q Consensus 254 i~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~g----------~~~~~~p~~l~~~~vd~~v 323 (347)
|++|+.+.+|+||+|+|+||+++|++.+|+..++.+++|+|||.+++.+.+ ...+.+|+.+..+.+|+++
T Consensus 163 I~~q~~~~~D~vv~~vGgGg~~~Gi~~~~k~~~~~~~~igve~~~s~~~~~~~~~~~~~~gig~~~~~~~~~~~~id~~~ 242 (320)
T d1z7wa1 163 IWKGTGGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPSVLNVDLIDEVV 242 (320)
T ss_dssp HHHHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEEGGGCGGGTCCCCCCSCTTSCCSSCCTTCCGGGCSEEE
T ss_pred HHHhccCCCCEEEeCCCCCcccchhhhhhhhhhcceeeecccccCCccccCCCCCCceeeeccCCcCcchhhhhhcceee
Confidence 999998889999999999999999999999999999999999999877654 3345678888889999999
Q ss_pred EeCHHHHHHHHHHHHHhcCccccC
Q 019047 324 KVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 324 ~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.|+|+|+++++++|+++|||++||
T Consensus 243 ~V~d~e~~~a~~~l~~~eGi~ve~ 266 (320)
T d1z7wa1 243 QVSSDESIDMARQLALKEGLLVGI 266 (320)
T ss_dssp EECHHHHHHHHHHHHHHHSCCBCH
T ss_pred ccCHHHHHHHHHHHHHHCCEEEeh
Confidence 999999999999999999999986
|
| >d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Escherichia coli, isoform B (CysM) [TaxId: 562]
Probab=100.00 E-value=1.5e-52 Score=394.16 Aligned_cols=248 Identities=42% Similarity=0.720 Sum_probs=226.8
Q ss_pred hhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHH
Q 019047 98 VTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAV 177 (347)
Q Consensus 98 v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~ 177 (347)
+...+|+|||+++++|++.+|++||+|+|++|||||||+|++.+++..|.+.|.+.++ .+|+++|+||||.|+|++|+.
T Consensus 3 i~~~IG~TPL~~~~~l~~~~g~~iy~K~E~~~ptGSfK~Rga~~~i~~a~~~g~~~~~-~~vv~aSsGN~g~a~A~~a~~ 81 (292)
T d2bhsa1 3 LEQTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPG-DVLIEATSGNTGIALAMIAAL 81 (292)
T ss_dssp GGGGSSCCCEEECSSSSCCSSCEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTSCCTT-SEEEEECCSHHHHHHHHHHHH
T ss_pred hhcccCCCceEECCccChhhCCEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhCCcCCC-ceeeeecccchhHHHHHHHHh
Confidence 5678999999999999999999999999999999999999999999999999987766 469999999999999999999
Q ss_pred cCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHHHHh
Q 019047 178 KGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWED 257 (347)
Q Consensus 178 ~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei~~q 257 (347)
+|++|+||||+++++.|+++|+.+||+|+.++.+.+..++..++.+.+++. +.++.++|+++.+++.||.++++||++|
T Consensus 82 ~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~Ei~~q 160 (292)
T d2bhsa1 82 KGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLALEMANRG-EGKLLDQFNNPDNPYAHYTTTGPEIWQQ 160 (292)
T ss_dssp HTCEEEEEEESCCCHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHHHHHT-SSEECCTTTCTHHHHHHHHTHHHHHHHH
T ss_pred cCcceEeeeccCchhhhhHHHHHhCCCcceeecccchHHHHHHHhhccccc-cccccCCCchhcchhhHHHHHHHHhHHh
Confidence 999999999999999999999999999999987766667777777777765 7888999999999888999999999999
Q ss_pred hCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccccCC---CCCCCchhccccccCeEEEeCHHHHHHHH
Q 019047 258 TLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGE---NAGYVPSILDVQLLDEVIKVTNDEAVNMA 334 (347)
Q Consensus 258 l~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~g~---~~~~~p~~l~~~~vd~~v~Vsd~ea~~a~ 334 (347)
+++.+|+||+|+|+||+++|++.++|+..++++|++|||++++.+... ..+..++.+....+|+++.|+|+|+++++
T Consensus 161 ~~~~~d~vv~~~G~Gg~~~G~~~~~k~~~~~~~i~~Vep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~ea~~a~ 240 (292)
T d2bhsa1 161 TGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQPEEGSSIPGIRRWPTEYLPGIFNASLVDEVLDIHQRDAENTM 240 (292)
T ss_dssp TTTCCCEEEEECSSSHHHHHHHHHHHTSSSCCEEEEEEECTTCCCTTCCCCCTTTCCTTCCGGGCSEEEEECHHHHHHHH
T ss_pred cCCCCCcccccCCCccchhhhhhhhhhccCcceEEEeccccccccccccccccccccccccccccceEEEcCHHHHHHHH
Confidence 988899999999999999999999999999999999999998766542 33456667778889999999999999999
Q ss_pred HHHHHhcCccccC
Q 019047 335 RRLALEEGLLVMC 347 (347)
Q Consensus 335 ~~La~~eGI~~G~ 347 (347)
++|+++|||++||
T Consensus 241 ~~L~~~eGi~vep 253 (292)
T d2bhsa1 241 RELAVREGIFCGV 253 (292)
T ss_dssp HHHHHHHCCCBCH
T ss_pred HHHHHHcCeEEeH
Confidence 9999999999987
|
| >d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2.9e-52 Score=393.96 Aligned_cols=250 Identities=49% Similarity=0.783 Sum_probs=228.8
Q ss_pred hhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCC-CeEEEEeCCChhHHHHHHHH
Q 019047 97 DVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPG-KTVLVEPTTGNTGLGIAFVA 175 (347)
Q Consensus 97 ~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g-~~~vv~assGN~g~AlA~aa 175 (347)
|+...+++|||+++++|++.+|++||+|+|++|||||||+|++.+++.+|+++|.+.++ .+.|+++|+||||.|+|++|
T Consensus 2 ri~~~ig~TPLi~~~~l~~~~g~~i~~K~E~~~ptGSfK~Rga~~~i~~a~~~g~~~~~~~~~vv~~SsGN~g~a~A~~a 81 (302)
T d1ve1a1 2 RVEGAIGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSGQVIVEPTSGNTGIGLAMIA 81 (302)
T ss_dssp CGGGGCCCCCEEECCSSSCTTSCEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTSCCTTSCCEEEESCCSHHHHHHHHHH
T ss_pred cccCccCCCCeEECcccchhhCCEEEEEeCCCCcccCcHHHHHHHHHHHHHHhCCCCCCCCcEEEEecCCcchhhhhhhh
Confidence 57788999999999999999999999999999999999999999999999999987766 36799999999999999999
Q ss_pred HHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHHH
Q 019047 176 AVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIW 255 (347)
Q Consensus 176 ~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei~ 255 (347)
+.+|++|+||||+..+..|+..++.+|++++.+....+..+...++.+.+++. +++++++|+|+.+++.||+|+++||+
T Consensus 82 ~~~g~~~~iv~p~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~t~~~EI~ 160 (302)
T d1ve1a1 82 ASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRMLAAREEALRLKEEL-GAFMPDQFKNPANVRAHYETTGPELY 160 (302)
T ss_dssp HHHTCEEEEEEETTCCHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHHHHHH-TCBCCCTTTCHHHHHHHHHTHHHHHH
T ss_pred hccCcceeEeeecccchheeehhhhhhhcchhcccccchHHHHHHhhhhhhcc-CccccccCccchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999987665666677777777765 89999999999998889999999999
Q ss_pred HhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccccC----------CCCCCCchhccccccCeEEEe
Q 019047 256 EDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG----------ENAGYVPSILDVQLLDEVIKV 325 (347)
Q Consensus 256 ~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~g----------~~~~~~p~~l~~~~vd~~v~V 325 (347)
+|++++||+||+|+|+||+++|++.+|++.+++++||||||.+++.+.. ...+..|+.+..+..|+.+.|
T Consensus 161 ~q~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~iigve~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~V 240 (302)
T d1ve1a1 161 EALEGRIDAFVYGSGTGGTITGVGRYLKERIPHVKVIAVEPARSNVLSGGKMGQHGFQGMGPGFIPENLDLSLLDGVIQV 240 (302)
T ss_dssp HHTTTCCSEEEEECSSSHHHHHHHHHHHTTCTTCEEEEEEEGGGCTTTTCCCCCCSCTTSCCSSCCTTCCGGGCSEEEEE
T ss_pred HHcCCCCCeEEEeecCcHHHHHHHHHHHhcCCCCEEEEEEecccceeeeccccCcccCccCCCcCCchhhhhcceeeeec
Confidence 9998889999999999999999999999999999999999998765533 334667778888899999999
Q ss_pred CHHHHHHHHHHHHHhcCccccC
Q 019047 326 TNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 326 sd~ea~~a~~~La~~eGI~~G~ 347 (347)
+|+|+++++++|+++|||++||
T Consensus 241 ~d~ea~~a~~~l~~~eGi~v~~ 262 (302)
T d1ve1a1 241 WEEDAFPLARRLAREEGLFLGM 262 (302)
T ss_dssp CHHHHHHHHHHHHHHHCCCBCH
T ss_pred CHHHHHHHHHHHHHHcCCEEec
Confidence 9999999999999999999986
|
| >d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.8e-52 Score=394.38 Aligned_cols=244 Identities=47% Similarity=0.697 Sum_probs=221.2
Q ss_pred hhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHH
Q 019047 96 EDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVA 175 (347)
Q Consensus 96 ~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa 175 (347)
+.+...+|+|||+++++| +++||+|+|++|||||||+|+|.+++.+|+++|..+. .|+++|+||||.|+|++|
T Consensus 2 ~~i~~~ig~TPL~~~~~l----~~~i~~K~E~~nptGSfK~Rga~~~i~~a~~~g~~~~---~vv~~SsGN~g~a~A~~a 74 (293)
T d1o58a_ 2 HMMERLIGSTPIVRLDSI----DSRIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLKN---GIVEPTSGNMGIAIAMIG 74 (293)
T ss_dssp CHHHHHSCCCCEEECTTT----CTTEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTCCTT---CEEEECSSHHHHHHHHHH
T ss_pred chhhhhcCCCCcEECCCC----CCEEEEEECCCCCccChHHHHHHHHHHHHHHcCCCCc---ceEEecCcchhhHHHHhh
Confidence 567889999999999876 4689999999999999999999999999999997543 499999999999999999
Q ss_pred HHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHHH
Q 019047 176 AVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIW 255 (347)
Q Consensus 176 ~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei~ 255 (347)
+.+|++|+||||+++++.|+++|+.+||+|+.++.+.+...+..++.+++++. +++|+++|+|+.+++.||.|++.||.
T Consensus 75 ~~~g~~~~i~~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~t~~~Ei~ 153 (293)
T d1o58a_ 75 AKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMKGAVEKALEISRET-GAHMLNQFENPYNVYSHQFTTGPEIL 153 (293)
T ss_dssp HHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHH-CCBCCCTTTCHHHHHHHHHTHHHHHH
T ss_pred hhccceeEeeccccccHHHeeccccCCcEEEEecCcchhhHHHHHHHHHHhcc-CCEEeeeccccceeeeccccHHHhhh
Confidence 99999999999999999999999999999999987666667788888888886 78999999999988889999999999
Q ss_pred HhhCCCCCEEEEecCcchHHHHHHHHHHhcC-CCCeEEEEcCCCCccccC----------CCCCCCchhccccccCeEEE
Q 019047 256 EDTLGCVDIFVAAIGTGGTITGTGRFLKMMN-KEIKVVGVEPAERSVISG----------ENAGYVPSILDVQLLDEVIK 324 (347)
Q Consensus 256 ~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~-~~~~vigVep~~~~~~~g----------~~~~~~p~~l~~~~vd~~v~ 324 (347)
+|+.++||+||+|+|+||+++|++.+||+.. +.++||+|||++++.+.+ ...+..|+.+.+..+|+++.
T Consensus 154 ~q~~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~~ii~vep~~~~~l~~~~~~~~~i~~i~~~~~~~~~~~~~~d~~v~ 233 (293)
T d1o58a_ 154 KQMDYQIDAFVAGVGTGGTISGVGRVLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGIGAGFVPKILDRSVIDEVIT 233 (293)
T ss_dssp HHTTTCCSEEEEECSSSHHHHHHHHHHHHHHGGGSEEEEEEETTSCTTTTCCCCCCCCTTSCCSSCCTTCCGGGCCEEEE
T ss_pred hhcCCCCCEEEEecCcchhHHHHHHHHHHHCCCCCeEEEEecCCCccccCCCcCCcccccCCCCccchhhhhhhCcEEEE
Confidence 9998899999999999999999999999864 459999999999876644 33456788888889999999
Q ss_pred eCHHHHHHHHHHHHHhcCccccC
Q 019047 325 VTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 325 Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
|+|+|+++++++|+++|||++||
T Consensus 234 v~d~e~~~a~~~l~~~eGi~~ep 256 (293)
T d1o58a_ 234 VEDEEAYEMARYLAKKEGLLVGI 256 (293)
T ss_dssp ECHHHHHHHHHHHHHHHCCCBCH
T ss_pred ECHHHHHHHHHHHHHHcCCEEeH
Confidence 99999999999999999999987
|
| >d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Cystathionine beta-synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.9e-51 Score=395.17 Aligned_cols=253 Identities=38% Similarity=0.599 Sum_probs=218.7
Q ss_pred hhhhhhhccCCCceeeccccccCCC--CeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHH
Q 019047 94 IAEDVTQLIGRTPMVYLNKVTEGCV--GNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGI 171 (347)
Q Consensus 94 ~~~~v~~~~~~TPLv~~~~l~~~~g--~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~Al 171 (347)
+.+.|...+|+|||+++++|++.+| ++||+|+|++|||||||+|+|.+++..|.+.|+++++ ..|+++|+||||.|+
T Consensus 34 ~~~~i~~~IG~TPLv~l~~ls~~~G~~~~i~~K~E~~nptGSfKdRga~~~i~~a~~~g~~~~~-~~vv~aSsGN~g~a~ 112 (355)
T d1jbqa_ 34 ILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKPG-DTIIEPTSGNTGIGL 112 (355)
T ss_dssp EESSGGGGSSCCCEEECCSHHHHTTCCSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHHTCSCTT-CEEEEECSSHHHHHH
T ss_pred ccccHHHhcCCCCcEECcchhHHhCCCCEEEEEECCCCCccCHHHHHHHHHHHHHHHcCCcccC-ceEEEecccchhhHH
Confidence 3455777899999999999999876 5899999999999999999999999999999987775 459999999999999
Q ss_pred HHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHH---HHHHHHHHHHcCCCceecCCCCChHHHHHHHH
Q 019047 172 AFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRG---ALDKAEEIVLNTPNAYMFQQFDNMANLKIHFD 248 (347)
Q Consensus 172 A~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~---a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ 248 (347)
|++|+.+|++|+||||+++++.|+++|+.+||+|+.++.+....+ ....+.+...+.++.++.+++.++.+++.||+
T Consensus 113 A~~a~~~Gi~~~iv~p~~~~~~k~~~i~~~GA~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~ 192 (355)
T d1jbqa_ 113 ALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYD 192 (355)
T ss_dssp HHHHHHHTCEEEEEECSCCCHHHHHHHHHTTCEEEECCC-------CCHHHHHHHHHHHSTTEECCCTTTCTHHHHHHHH
T ss_pred HHHHHhccCCeEEEeeccchHHHHHHHHhcCCeEEEecccccchhhhhhhhHHHHHHHhccccccccccCcccchhhhcc
Confidence 999999999999999999999999999999999999875433322 33444455555567888888888888878999
Q ss_pred HHHHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccccC---------------CCCCCCchh
Q 019047 249 STGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG---------------ENAGYVPSI 313 (347)
Q Consensus 249 ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~g---------------~~~~~~p~~ 313 (347)
|++.||++|++++||+||+|+|+||+++|++.+|++.+++++|++|||.++..... ...+..+..
T Consensus 193 t~~~EI~~ql~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~kii~vep~gs~~~~~~~~~~~~~~~~~i~gi~~~~~~~~ 272 (355)
T d1jbqa_ 193 TTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTTYEVEGIGYDFIPTV 272 (355)
T ss_dssp THHHHHHHHHTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEETTCSCSSSGGGGCCSCCCCSCCSCCCSSCCTT
T ss_pred cchhhhhhhcCCCCCeeEecccCCchHHHHHHHHhhcCCcceEEeecccCCcccccccccccccccccccccccccchhh
Confidence 99999999998899999999999999999999999999999999999998754322 223455556
Q ss_pred ccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 314 LDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 314 l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.....+|+++.|+|+|+++++++|+++|||++||
T Consensus 273 ~~~~~~~~~~~v~D~ea~~~~~~L~~~eGi~vep 306 (355)
T d1jbqa_ 273 LDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGG 306 (355)
T ss_dssp CCGGGCCEEEEECHHHHHHHHHHHHHHSCCCBCH
T ss_pred hhhhheeeeccCCHHHHHHHHHHHHHHhCcEEeH
Confidence 6778899999999999999999999999999997
|
| >d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=100.00 E-value=4.1e-51 Score=388.04 Aligned_cols=245 Identities=20% Similarity=0.308 Sum_probs=218.5
Q ss_pred hhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHH
Q 019047 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (347)
Q Consensus 94 ~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~ 173 (347)
..+++.+.+++|||+++++|++.+|++||+|+|++|||||||||++.+++.++.+.+. ...|+++|+||||.++|+
T Consensus 11 a~~ri~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGSfKdRga~~~~~~~~~~~~----~~~vv~~ssGN~g~a~A~ 86 (318)
T d1v71a1 11 ASERIKKFANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLNEAQR----KAGVLTFSSGNHAQAIAL 86 (318)
T ss_dssp HHHHHTTTSCCCCEECCHHHHHHHTSEEEEEEGGGSGGGBTHHHHHHHHHTTCCHHHH----HHCEEECCSSHHHHHHHH
T ss_pred HHHHHhccCCCCCEEEchhhhHHHCCEEEEEeCCCCCCCCHHHHHHHHHHHHhhhccc----cceeeeeccchhhHHHHH
Confidence 3477888999999999999999999999999999999999999999999988766554 356999999999999999
Q ss_pred HHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHH
Q 019047 174 VAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPE 253 (347)
Q Consensus 174 aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~E 253 (347)
+|+.+|++|+||||+++++.|+++|+.+||+|+.++++ ++++...+.+++++. +++|+++|+|+..+ .||.|+++|
T Consensus 87 ~a~~~g~~~~i~~p~~~~~~k~~~l~~~Ga~vi~~~~~--~~~~~~~a~~~a~~~-g~~~~~~~~~~~~~-~g~~t~~~E 162 (318)
T d1v71a1 87 SAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDRY--KDDREKMAKEISERE-GLTIIPPYDHPHVL-AGQGTAAKE 162 (318)
T ss_dssp HHHHTTCCEEEEEETTCCHHHHHHHHHTTCEEEEECTT--TTCHHHHHHHHHHHH-TCBCCCSSSSHHHH-HHHTHHHHH
T ss_pred hhcccccceeecccccccHHHHHHHHHcCCcEEeccCC--chHHHHHHHHHHHhc-CCEecCCccccccc-cccchHHHH
Confidence 99999999999999999999999999999999999864 467788888888886 79999999999887 599999999
Q ss_pred HHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccc-----cC-----------------CCCCCCc
Q 019047 254 IWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVI-----SG-----------------ENAGYVP 311 (347)
Q Consensus 254 i~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~-----~g-----------------~~~~~~p 311 (347)
|++|+ +.+|+||+|+|+||+++|++.++|...++++|++|||..+... .+ ..++..+
T Consensus 163 i~~q~-~~~d~vvv~~G~GG~~~Gi~~~~~~~~~~~~ii~v~~~~~~~~~~s~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 241 (318)
T d1v71a1 163 LFEEV-GPLDALFVCLGGGGLLSGSALAARHFAPNCEVYGVEPEAGNDGQQSFRKGSIVHIDTPKTIADGAQTQHLGNYT 241 (318)
T ss_dssp HHHHH-CCCSEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEEGGGCHHHHHHHHTSCCCCCCCCCSCTTSCCSSCCHHH
T ss_pred HHHhc-CCCCEEEEcCCchHHHHHHHHHHHhhCCCceeecccccchhhhhhccccccccccCCCCccccccccCCcchHH
Confidence 99999 5799999999999999999999999999999999999875321 11 1223445
Q ss_pred hhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 312 SILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 312 ~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
+.+.++.+|+++.|+|+|+++|++.|+++|||++||
T Consensus 242 ~~~~~~~~~~~~~v~d~e~~~a~~~la~~egi~~ep 277 (318)
T d1v71a1 242 FSIIKEKVDDILTVSDEELIDCLKFYAARMKIVVEP 277 (318)
T ss_dssp HHHHHHHCCEEEEECHHHHHHHHHHHHHHTCCCCCG
T ss_pred HHHHHhccCceeeECHHHHHHHHHHHHHHcCcEEeH
Confidence 667788899999999999999999999999999997
|
| >d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Haemophilus influenzae [TaxId: 727]
Probab=100.00 E-value=2.5e-49 Score=375.44 Aligned_cols=250 Identities=47% Similarity=0.761 Sum_probs=218.2
Q ss_pred hhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHH
Q 019047 95 AEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFV 174 (347)
Q Consensus 95 ~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~a 174 (347)
+++++..+|+|||+++++|++ +++||+|+|++|||||||+|+|.+++..|++.|.+.++ ++|+++|+||||.|+|++
T Consensus 3 y~~~~~~ig~TPLv~~~~l~~--~~~I~lK~E~~nptGSfK~RgA~~~i~~a~~~g~~~~~-~~vv~~SsGN~g~a~A~~ 79 (310)
T d1y7la1 3 YADNSYSIGNTPLVRLKHFGH--NGNVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTLTKG-KEIVDATSGNTGIALAYV 79 (310)
T ss_dssp CSSGGGGCCCCCEEECSSSSS--TTCEEEEETTSSGGGBTHHHHHHHHHHHHHHTTSSCTT-CEEEESCCSHHHHHHHHH
T ss_pred cchhhhhcCCCCeEECCCCCC--CCEEEEEECCCCCcCcCHHHHHHHHHHHHHHcCCCCCC-ceeeeecCCCchHHHHHH
Confidence 456788899999999998876 57899999999999999999999999999999988776 469999999999999999
Q ss_pred HHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHH-HcCCCceecCCCCChHHHHHHHHHHHHH
Q 019047 175 AAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIV-LNTPNAYMFQQFDNMANLKIHFDSTGPE 253 (347)
Q Consensus 175 a~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a-~~~~~~~~~~~~~n~~~~~~g~~ti~~E 253 (347)
|+.+|++|+||||++++..|+++++.+||+|+.+++..+..+.+.+..+.. ....+.+++++|+++.++..|+++++.|
T Consensus 80 a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~E 159 (310)
T d1y7la1 80 AAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKGMKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPE 159 (310)
T ss_dssp HHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHCTTTEECCCTTTCTHHHHHHHHTHHHH
T ss_pred HHHhhccccccchhhhhhhhhhhHHHhCCceEeccCccccchhhHHHHHHHHhhcCccccCCCCcchhhHHHhhhhHHHH
Confidence 999999999999999999999999999999999986543333333333333 3334678889999999887899999999
Q ss_pred HHHhhCCCCCEEEEecCcchHHHHHHHHHHh-cCCCCeEEEEcCCCCcccc----------------CCCCCCCchhccc
Q 019047 254 IWEDTLGCVDIFVAAIGTGGTITGTGRFLKM-MNKEIKVVGVEPAERSVIS----------------GENAGYVPSILDV 316 (347)
Q Consensus 254 i~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~-~~~~~~vigVep~~~~~~~----------------g~~~~~~p~~l~~ 316 (347)
|++|+++.||+||+|+|+||+++|++.++|. ..+++++++|||.+++... |...+..|+.+..
T Consensus 160 i~~~~~~~~d~vv~~~G~Gg~~~G~~~~lk~~~~~~~~~i~ve~~~~~~~~~~~~~~~~~~~~~~~~gig~~~~~~~~~~ 239 (310)
T d1y7la1 160 IWKDTDGKVDVVVAGVGTGGSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAGEEVKPGPHKIQGIGAGFIPKNLDL 239 (310)
T ss_dssp HHHHTTTCEEEEEEECSSSHHHHHHHHHHHHTSCCCCEEEEEEETTSCHHHHHHHTCCCCCCCCSCTTSCCSSCCTTCCG
T ss_pred HHHhcCCCCCEEEecCcCCcchhHHHHHHHHhhcccceeccccccCchhhhhhhcCCccccCCceeeecccccccHHHhh
Confidence 9999988999999999999999999999985 6889999999999875432 2334567778888
Q ss_pred cccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 317 QLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 317 ~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
..+|+++.|+|+|+++++++|+++|||++||
T Consensus 240 ~~~~~~~~v~d~ea~~~~~~l~~~eGi~vep 270 (310)
T d1y7la1 240 SIIDRVETVDSDTALATARRLMAEEGILAGI 270 (310)
T ss_dssp GGCCEEEEECHHHHHHHHHHHHHHHCCCBCH
T ss_pred hhcceeccCCHHHHHHHHHHHHHHcCCEEeH
Confidence 8999999999999999999999999999987
|
| >d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine deaminase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=7.5e-50 Score=378.04 Aligned_cols=242 Identities=21% Similarity=0.266 Sum_probs=212.8
Q ss_pred hhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHH
Q 019047 95 AEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFV 174 (347)
Q Consensus 95 ~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~a 174 (347)
++++...+++|||+++++|++.+|++||+|+|++|||||||||+|.+++.++.. ...|+++|+||||.|+|++
T Consensus 10 ~~~i~~~ig~TPL~~~~~L~~~~g~~i~~K~E~~nPtGSfKdRgA~~~~~~~~~-------~~~vv~aSsGN~g~a~A~~ 82 (310)
T d1ve5a1 10 FRRIAPYTHRTPLLTSRLLDGLLGKRLLLKAEHLQKTGSFKARGALSKALALEN-------PKGLLAVSSGNHAQGVAYA 82 (310)
T ss_dssp HHHHGGGSCCCCEEECHHHHHHTTSEEEEEEGGGSGGGBTHHHHHHHHHHHSSS-------CCCEEEECSSHHHHHHHHH
T ss_pred HHHHhCcCCCCceeEhhhhhHHhCCEEEEEeCCCCCcCCcHHHHHHHHHHHhcc-------cCCccccCchhhHHHHHHH
Confidence 466888899999999999999999999999999999999999999887765432 2348999999999999999
Q ss_pred HHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHH
Q 019047 175 AAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEI 254 (347)
Q Consensus 175 a~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei 254 (347)
|+.+|++|+||||+++++.|+.+|+.+||+|+.++++ ++++...|.+.+++. +++|+++|+|+.++ .|++|++.||
T Consensus 83 aa~~G~~~~i~vp~~~~~~~~~~~~~~Ga~vi~~~~~--~~~~~~~a~~~~~~~-~~~~~~~~~np~~~-~g~~t~~~Ei 158 (310)
T d1ve5a1 83 AQVLGVKALVVMPEDASPYKKACARAYGAEVVDRGVT--AKNREEVARALQEET-GYALIHPFDDPLVI-AGQGTAGLEL 158 (310)
T ss_dssp HHHHTCCEEEECCCC--CCHHHHHHHTTCEEECTTCC--TTTHHHHHHHHHHHH-CCEECCSSSSHHHH-HHHHHHHHHH
T ss_pred HHHcCCeEEEeecccchHHHHHHHhhhccccceeecc--chhHHHHHHHHHHhc-CCcCCCCCCChhhH-hhhhhhHHHH
Confidence 9999999999999999999999999999999998864 467888888888886 79999999999998 5999999999
Q ss_pred HHhhC---CCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCcccc-----C------------------CCCC
Q 019047 255 WEDTL---GCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVIS-----G------------------ENAG 308 (347)
Q Consensus 255 ~~ql~---~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~-----g------------------~~~~ 308 (347)
.+|+. ..||+||+|+|+||+++|++.++++.++.+++++|||.+++.+. | ..++
T Consensus 159 ~~q~~~~~~~~d~vv~~~g~Gg~~~g~~~~~~~~~~~~~ii~ve~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g 238 (310)
T d1ve5a1 159 LAQAGRMGVFPGAVLAPVGGGGLLAGLATAVKALSPTTLVLGVEPEAADDAKRSLEAGRILRLEAPPRTRADGVRTLSLG 238 (310)
T ss_dssp HHHHHHHTCCCSEEEEECSSSHHHHHHHHHHHHHCTTSEEEEEEEGGGCHHHHHHHHTSCCCCSSCCCCSCGGGCCSSCC
T ss_pred HHHHHhcCCceeeeeeccCcchhhhhhhhhhhccCCccceEEEEeeccchhhhhhccccccccCccccccccccCCCCcc
Confidence 99974 47999999999999999999999999999999999998764321 1 1234
Q ss_pred CCchhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 309 YVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 309 ~~p~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
..+|.+.++.+|+++.|+|+|+++++++|+++|||++||
T Consensus 239 ~~~~~~~~~~~d~~v~V~d~e~~~a~~~La~~eGi~vep 277 (310)
T d1ve5a1 239 ERTFPILRERVDGILTVSEEALLEAERLLFTRTKQVVEP 277 (310)
T ss_dssp TTTHHHHHHHCCEEEEECHHHHHHHHHHHHHHTCBCCCG
T ss_pred hhhHHHhcccCCeEEEECHHHHHHHHHHHHHHcCCEEcH
Confidence 556677788899999999999999999999999999997
|
| >d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: L-serine dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.6e-49 Score=377.36 Aligned_cols=238 Identities=20% Similarity=0.177 Sum_probs=214.0
Q ss_pred cCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCc
Q 019047 102 IGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYK 181 (347)
Q Consensus 102 ~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~ 181 (347)
+.+|||+++++|++.+|++||+|+|++|||||||||++.+++.++.++|. ..||++|+||||+|+|++|+.+|++
T Consensus 5 ~~~TPl~~~~~L~~~~g~~i~~K~E~~nptGSfK~R~a~~~~~~a~~~g~-----~~vv~aSsGN~g~a~A~~a~~~G~~ 79 (319)
T d1p5ja_ 5 HVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQGC-----AHFVCSSAGNAGMAAAYAARQLGVP 79 (319)
T ss_dssp SCCCCEEEEHHHHHHHTSCEEEECGGGSGGGBTTHHHHHHHHHHHHHTTC-----CEEEECCSSHHHHHHHHHHHHHTCC
T ss_pred ceeCCcEEhHHhHHHHCCEEEEEeCCCCCCCCcHHHHHHHHHHHHHHcCC-----CEEEEeCCCcHHHHHHHHhhhcccc
Confidence 34799999999999999999999999999999999999999999999986 5689999999999999999999999
Q ss_pred EEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHHHHhhCCC
Q 019047 182 LIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGC 261 (347)
Q Consensus 182 ~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei~~ql~~~ 261 (347)
|+||||++++..|+++|+.+|++|+.+++ +++++.+.+.++++++++.+|+++|+|+.++ .||.+++.||++|+++.
T Consensus 80 ~~i~~p~~~~~~k~~~~~~~Ga~v~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~g~~~~~~Ei~~q~~~~ 156 (319)
T d1p5ja_ 80 ATIVVPGTTPALTIERLKNEGATCKVVGE--LLDEAFELAKALAKNNPGWVYIPPFDDPLIW-EGHASIVKELKETLWEK 156 (319)
T ss_dssp EEEEECTTCCHHHHHHHHHTTCEEEECCS--CHHHHHHHHHHHHHHSTTEEECCSSCCHHHH-HHHTHHHHHHHHHCSSC
T ss_pred ceeccccccccccccccccceeccccccc--cchhHHHHHHHHhhccCcccccccccccccc-cccchhhhhhhccccCC
Confidence 99999999999999999999999999986 4689999999999888788999999999987 59999999999999888
Q ss_pred CCEEEEecCcchHHHHHHHHHHhcC-CCCeEEEEcCCCCccc-----cCCC---------------C--CCCchhccccc
Q 019047 262 VDIFVAAIGTGGTITGTGRFLKMMN-KEIKVVGVEPAERSVI-----SGEN---------------A--GYVPSILDVQL 318 (347)
Q Consensus 262 ~D~vv~pvG~Gg~~~Gi~~~~k~~~-~~~~vigVep~~~~~~-----~g~~---------------~--~~~p~~l~~~~ 318 (347)
||++|+|+|+||+++|++.++++.. +++++++|||.+++.+ .|.. + +..++.+.++.
T Consensus 157 ~d~vv~~vg~Gg~~~g~~~~~~~~~~~~~~~i~ve~~~~~~~~~s~~~g~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~ 236 (319)
T d1p5ja_ 157 PGAIALSVGGGGLLCGVVQGLQECGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAKALGVKTVGSQALKLFQEH 236 (319)
T ss_dssp CSEEEEECSSSHHHHHHHHHHHHTTCTTCCEEEEEETTSCHHHHHHHHTSCCCCSCCCCSCGGGCCSSCCHHHHHHHHHS
T ss_pred CceeeecccCCcchhhhHHHHHHhccCCeeeeecccccccccchhhhccccccccccccccccccccccccccchhhhhc
Confidence 9999999999999999999999864 7899999999987432 2210 1 11223455678
Q ss_pred cCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 319 LDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 319 vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
+|+++.|+|+|++++++.|+++|||++||
T Consensus 237 ~~~~~~V~d~e~~~a~~~l~~~egi~~ep 265 (319)
T d1p5ja_ 237 PIFSEVISDQEAVAAIEKFVDDEKILVEP 265 (319)
T ss_dssp CEEEEEECHHHHHHHHHHHHHHTCCCCCH
T ss_pred cceeeecCHHHHHHHHHHHHHHcCEEEeH
Confidence 99999999999999999999999999987
|
| >d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine deaminase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.3e-49 Score=378.64 Aligned_cols=242 Identities=23% Similarity=0.329 Sum_probs=215.7
Q ss_pred hhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHH
Q 019047 97 DVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAA 176 (347)
Q Consensus 97 ~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~ 176 (347)
+|+..+++|||+++++|++.+|++||+|+|++|||||||||+|.+++..+.+++. ..+|+++|+||||.|+|++|+
T Consensus 20 ~v~~~~~~TPL~~~~~L~~~lg~~i~~K~E~~nptGS~KdRga~~~i~~~~~~~~----~~~vv~assGN~g~a~A~~a~ 95 (331)
T d1tdja1 20 PVYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQK----AHGVITASAGNHAQGVAFSSA 95 (331)
T ss_dssp CGGGTCCCCCEEECHHHHHHTTSEEEEECGGGSTTSSSTHHHHHHHHHTTTTSSC----SSSCEEEECSSSHHHHHHHHH
T ss_pred ccceeccCCceeEHHHhhHHHCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhCC----CCeeeecccchhHHHHHHhhc
Confidence 5778899999999999999999999999999999999999999999998876664 356999999999999999999
Q ss_pred HcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHHHH
Q 019047 177 VKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWE 256 (347)
Q Consensus 177 ~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei~~ 256 (347)
.+|++|+||||+.++..|+++|+.+||+|+.++.+ ++++...+.+++++. +++|+++++|+.++ .||.|++.||.+
T Consensus 96 ~~g~~~~i~~p~~~~~~k~~~l~~~Ga~vi~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~g~~t~~~Ei~~ 171 (331)
T d1tdja1 96 RLGVKALIVMPTATADIKVDAVRGFGGEVLLHGAN--FDEAKAKAIELSQQQ-GFTWVPPFDHPMVI-AGQGTLALELLQ 171 (331)
T ss_dssp HTTCCEEEECCSSCCHHHHHHHHHHSCEEECCCSS--HHHHHHHHHHHHHHH-CCEECCSSCCHHHH-HHHHHHHHHHHH
T ss_pred cccccceeeccccchhHHHHHHHhcCCEEEEcCcc--cccchhhhhhhhhcC-CCccccccCChHHh-hhhhhHHHHHHH
Confidence 99999999999999999999999999999998853 567777777777775 79999999999987 699999999999
Q ss_pred hhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCcccc-----C-----------------CCCCCCchhc
Q 019047 257 DTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVIS-----G-----------------ENAGYVPSIL 314 (347)
Q Consensus 257 ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~-----g-----------------~~~~~~p~~l 314 (347)
|. +++|+||+|+|+||+++|++.+|++.+++++||+|||..++.+. | ..++..+|.+
T Consensus 172 q~-~~~D~vv~~~G~GG~~aG~~~~~~~~~~~~~ii~ve~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~~~ 250 (331)
T d1tdja1 172 QD-AHLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSACLKAALDAGHPVDLPRVGLFAEGVAVKRIGDETFRL 250 (331)
T ss_dssp HC-TTCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEETTTCHHHHHHHHTSCCCCSCCCSSSSTTCCSSCCCHHHHH
T ss_pred hc-CCCCEEEEeCChhHHHHHHHHHHHHhCCCcEEEEecccccchHHHHHhCCCeeecCCCCceeccccCCCCCHHHHHH
Confidence 97 67999999999999999999999999999999999999875432 1 0112334556
Q ss_pred cccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 315 DVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 315 ~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.++.+|+++.|+|+|++++++.|+++|||++||
T Consensus 251 ~~~~~d~~~~V~d~e~~~a~~~la~~eGi~~ep 283 (331)
T d1tdja1 251 CQEYLDDIITVDSDAICAAMKDLFEDVRAVAEP 283 (331)
T ss_dssp HTTSCCEEEEECHHHHHHHHHHHHHHTCCCCCH
T ss_pred hhccCCEEEEecHHHHHHHHHHHHHHcCcEEeH
Confidence 678899999999999999999999999999987
|
| >d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=100.00 E-value=2.9e-48 Score=377.28 Aligned_cols=241 Identities=25% Similarity=0.329 Sum_probs=210.4
Q ss_pred ccCCCceeeccccccCCCCeEEEEeCCCCCCC-chhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcC
Q 019047 101 LIGRTPMVYLNKVTEGCVGNVAAKLESMEPCR-SVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKG 179 (347)
Q Consensus 101 ~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptG-SfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~G 179 (347)
...||||+++ ++....|++||+|+|++|||| |||||+|.+++.+|.++ ++++. +|+++|+||||.|+|++|+.+|
T Consensus 92 ~~~PTPLvrl-~l~~~~G~~IylKlE~~NPtGgSfKdR~A~~~i~~A~~~--~~~g~-~VVeaSSGN~GiAlA~~aa~lG 167 (382)
T d1wkva1 92 RGKPTPLVRS-RLQLPNGVRVWLKLEWYNPFSLSVKDRPAVEIISRLSRR--VEKGS-LVADATSSNFGVALSAVARLYG 167 (382)
T ss_dssp HSCSCCEEEC-CCCCSTTEEEEEEEGGGSTTTSBTTHHHHHHHHHHHTTT--SCTTC-EEEEECCHHHHHHHHHHHHHTT
T ss_pred CCCCCCEEEC-CCCCCCCCEEEEEecCCCCCCCccHHHHHHHHHHHHHhc--cCCCC-EEEEeCCcHHHHHHHHHHHHcC
Confidence 4567999997 577777899999999999985 99999999999988654 44553 5899999999999999999999
Q ss_pred CcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCCChHHHHHHHHHHHHHHHHhhC
Q 019047 180 YKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTL 259 (347)
Q Consensus 180 l~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei~~ql~ 259 (347)
++|+||||+++++.|+.+|+.+||+|+.++...+..+++.++.+.+++. +++++++|.|+.+++.||+|++.||++|+.
T Consensus 168 ik~~Iv~P~~~~~~K~~~ira~GAeVi~~~~~~~~~~~~~~a~~~a~~~-~~~~~~q~~N~~~~~~h~~ttg~EI~eQl~ 246 (382)
T d1wkva1 168 YRARVYLPGAAEEFGKLLPRLLGAQVIVDPEAPSTVHLLPRVMKDSKNE-GFVHVNQFYNDANFEAHMRGTAREIFVQSR 246 (382)
T ss_dssp CEEEEEEETTSCHHHHHHHHHTTCEEEEETTCSSSGGGHHHHHHHHHHH-CCEECCTTTCHHHHHHHHHTHHHHHHHHHH
T ss_pred CCEEEEeeccccccccccccccCcceeecCcchhhHHHHHHHhhhcccc-CccccccccccceeeehhhcchHHHHHHhh
Confidence 9999999999999999999999999999987655667788888888775 789999999999998899999999999983
Q ss_pred ---CCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccccCCC---CCCCchhccccccCeEEEeCHHHHHHH
Q 019047 260 ---GCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISGEN---AGYVPSILDVQLLDEVIKVTNDEAVNM 333 (347)
Q Consensus 260 ---~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~g~~---~~~~p~~l~~~~vd~~v~Vsd~ea~~a 333 (347)
..+|+||+|+|+||+++|++.++|+.+++++||+|||.+++.+.|.. .+..+ .-..+..|+++.|+|+|++++
T Consensus 247 ~~~~~~d~vv~~vGtGG~~~Gi~~~lk~~~p~vkiigVep~~~~~i~g~~~i~~g~~~-~~~~d~~~~i~~Vsd~Eai~a 325 (382)
T d1wkva1 247 RGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLVQPAQGDSIPGIRRVETGMLW-INMLDISYTLAEVTLEEAMEA 325 (382)
T ss_dssp HTTCCEEEEEECCSSSHHHHHHHHHHHHHCTTCEEEEEEECTTCCCTTCCCGGGCCSH-HHHSCCCCEEEEECHHHHHHH
T ss_pred cCCCceeEEEEecccccccccceeehhhhCCccceeEeccccccccccccccccCccC-ccccccceEEEEECHHHHHHH
Confidence 36899999999999999999999999999999999999988776532 22222 222356789999999999999
Q ss_pred HHHHHHhcCccccC
Q 019047 334 ARRLALEEGLLVMC 347 (347)
Q Consensus 334 ~~~La~~eGI~~G~ 347 (347)
+++|+++|||++||
T Consensus 326 ~r~La~~EGI~vgp 339 (382)
T d1wkva1 326 VVEVARSDGLVIGP 339 (382)
T ss_dssp HHHHHHHHSCCBCH
T ss_pred HHHHHHHcCCEEcH
Confidence 99999999999996
|
| >d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: O-acetylserine sulfhydrylase (Cysteine synthase) species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.4e-47 Score=361.09 Aligned_cols=248 Identities=48% Similarity=0.751 Sum_probs=211.4
Q ss_pred hhhhhhhccCCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHH
Q 019047 94 IAEDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (347)
Q Consensus 94 ~~~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~ 173 (347)
+++++.+.+|+|||++++++. +++||+|+|++|||||||+|+|.+++.++++.|++.++. +++++|+||||.|+|+
T Consensus 3 ~~~~i~~~ig~TPLi~L~~l~---~~~i~~K~E~~~ptGSfK~Rga~~~i~~a~~~g~~~~~~-~vv~assGn~g~a~A~ 78 (302)
T d1fcja_ 3 IYEDNSLTIGHTPLVRLNRIG---NGRILAKVESRNPSFSVKCRIGANMIWDAEKRGVLKPGV-ELVEPTNGNTGIALAY 78 (302)
T ss_dssp EESSGGGGCCCCCEEECSSSS---SSCEEEEETTSSGGGBTHHHHHHHHHHHHHHHTCCCTTC-EEEEECSSHHHHHHHH
T ss_pred hHhHHHHhhCCCCcEECCccC---CCEEEEEecCCCCCCCCHHHHHHHHHHHHHHcCCCCCCc-eEEEeccccchhHHHH
Confidence 456788899999999987664 579999999999999999999999999999999888774 5899999999999999
Q ss_pred HHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHH---HHcCCCceecCCCCChHHHHHHHHHH
Q 019047 174 VAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEI---VLNTPNAYMFQQFDNMANLKIHFDST 250 (347)
Q Consensus 174 aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~---a~~~~~~~~~~~~~n~~~~~~g~~ti 250 (347)
+|+.+|++|+||||.++++.|+.+++.+|++|+.+++.. .++...++.. .++..+.++..++.++.++..||+|+
T Consensus 79 ~a~~~g~~~~i~~p~~~~~~k~~~~~~~ga~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti 156 (302)
T d1fcja_ 79 VAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAK--GMKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTT 156 (302)
T ss_dssp HHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGG--HHHHHHHHHHHHHHTSTTTEEECCTTTCTHHHHHHHHTH
T ss_pred HHHHhccCCceEEeecCcHHHHHHHHHhccceEEecccc--ccchhhhHHHHHHhhhccceeccccccccchhHHHHhHH
Confidence 999999999999999999999999999999999998653 3333333222 22333677788888888887899999
Q ss_pred HHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCe--EEEEcCCCCccc----------------cCCCCCCCch
Q 019047 251 GPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIK--VVGVEPAERSVI----------------SGENAGYVPS 312 (347)
Q Consensus 251 ~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~--vigVep~~~~~~----------------~g~~~~~~p~ 312 (347)
+.||++|+++.+|+||+|+|+||+++|++.++|...++++ +++++|..+... .|...+..|+
T Consensus 157 ~~Ei~e~~~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~~~~v~~~~~~s~~~~~~~~~~~~~~~~~~~~gig~~~~~~ 236 (302)
T d1fcja_ 157 GPEIWEDTDGQVDVFISGVGTGGTLTGVTRYIKGTKGKTDLITVAVEPTDSPVIAQALAGEEIKPGPHKIQGIGAGFIPG 236 (302)
T ss_dssp HHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHTTTCCTTCEEEEEEETTSCHHHHHHTTCCCCCCCCSCTTSCCSSCCT
T ss_pred HHHHHHhcCCCCCEEEEcCCCccccccceeeeeeccccccccccccccccchhhhccccccccccCCceecccCCCcCch
Confidence 9999999988999999999999999999999999877655 556666655321 2233566788
Q ss_pred hccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 313 ILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 313 ~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.+.+..+|++++|+|+|++++++.|+++|||++||
T Consensus 237 ~l~~~~~d~~~~Vsd~ea~~a~~~l~~~~gi~~ep 271 (302)
T d1fcja_ 237 NLDLKLIDKVVGITNEEAISTARRLMEEEGILAGI 271 (302)
T ss_dssp TCCGGGCSEEEEECHHHHHHHHHHHHHHHCCCCCH
T ss_pred hhhcccCcEEEEECHHHHHHHHHHHHHHcCCEEcH
Confidence 88889999999999999999999999999999997
|
| >d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Tryptophan synthase, beta-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=9e-45 Score=354.45 Aligned_cols=278 Identities=18% Similarity=0.199 Sum_probs=216.1
Q ss_pred CCCCCCCcccchhhHHHHHHHhccCCCCch---hhhhhh-cc-CCCceeeccccccCCCCeEEEEeCCCCCCCchhHHHH
Q 019047 65 AASSSSSSLYATSTREIEKEEGNDFHGVNI---AEDVTQ-LI-GRTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIG 139 (347)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~-~~-~~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga 139 (347)
+....-|+...+...||.+.|...+...+. .++++. ++ +||||+++++|++.+|++||+|+|++|||||||||+|
T Consensus 11 ~gg~~~pe~l~~~~~~l~~~~~~~~~~~~f~~e~~~~~~~~~grpTPL~~~~~Ls~~lg~~IylK~E~lnptGS~K~R~a 90 (390)
T d1qopb_ 11 FGGMYVPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQNITAGTRTTLYLKREDLLHGGAHKTNQV 90 (390)
T ss_dssp EEEEESCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCSCCEEECHHHHTTSSEEEEEEEGGGSTTSBTHHHHH
T ss_pred cCCEeCCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhcCCCCchhhEhHhhhhhhCCEEEEEEecCCcccccchhHH
Confidence 444455666777788999999887766543 333443 34 4599999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCC---CCHHHHHHHHhcCCEEEEECC-CCChH
Q 019047 140 YSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS---TNLERRILLRAFGAEIILTDP-EKGLR 215 (347)
Q Consensus 140 ~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~---~~~~~~~~l~~~GA~V~~~~~-~~~~~ 215 (347)
..++..|++.|+ +++++++|+||||.|+|++|+.+|++|+||||+. .+..++.+|+.|||+|+.++. ..+++
T Consensus 91 ~~~i~~A~~~G~----~~iv~easaGN~g~a~A~aaa~~Gl~~~I~mp~~~~~~k~~~v~~m~~~GAeVv~v~~g~~~l~ 166 (390)
T d1qopb_ 91 LGQALLAKRMGK----SEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLK 166 (390)
T ss_dssp HHHHHHHHHTTC----CEEEEEESSSHHHHHHHHHHHHHTCEEEEEEEHHHHHHCHHHHHHHHHTTCEEEEECSTTSSHH
T ss_pred HHHHHHHhhcCC----ceeeeehhHHHHHHHHHHHHHhccCceEEeecccccccchHHHHHHHhcCceEEEecCCchhhh
Confidence 999999999997 6778899999999999999999999999999984 457789999999999999974 44677
Q ss_pred HHHHHHHHHHHc-CCCceecCCC-----CChHHHHHHHHHHHHHHHHhh----CCCCCEEEEecCcchHHHHHHHHHHhc
Q 019047 216 GALDKAEEIVLN-TPNAYMFQQF-----DNMANLKIHFDSTGPEIWEDT----LGCVDIFVAAIGTGGTITGTGRFLKMM 285 (347)
Q Consensus 216 ~a~~~a~~~a~~-~~~~~~~~~~-----~n~~~~~~g~~ti~~Ei~~ql----~~~~D~vv~pvG~Gg~~~Gi~~~~k~~ 285 (347)
++..++.+.... ....++.... ..+.....+|.++|.|+.+|+ +..||+||+|+|+|++++|++.+|++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~e~~~q~~~~~g~~pD~vv~~vGgGs~~~G~~~~f~~- 245 (390)
T d1qopb_ 167 DACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMFADFIN- 245 (390)
T ss_dssp HHHHHHHHHHHHHTTTEEECCCSSCSSTTHHHHHHHTTTHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHGGGTT-
T ss_pred HhHHHHHHHHhhhhhhhhhccccccccccccccccchhhhhcchhHHHHHHHcCCccceEEecccccchhhheeccccc-
Confidence 787777665543 3334443222 122333458999999998885 45799999999999999999998876
Q ss_pred CCCCeEEEEcCCCCccccCC-----------------------------CC----------CCCc--hhccccccCeEEE
Q 019047 286 NKEIKVVGVEPAERSVISGE-----------------------------NA----------GYVP--SILDVQLLDEVIK 324 (347)
Q Consensus 286 ~~~~~vigVep~~~~~~~g~-----------------------------~~----------~~~p--~~l~~~~vd~~v~ 324 (347)
.+.+++++++|......++. .+ +..| +.+.....+++++
T Consensus 246 ~~~~~~ig~ep~~~g~~~~~~~a~~~~g~~g~~~~~~~~~~~~~~g~~~~~~s~a~gl~~~~~~~~~~~l~~~g~~~~~~ 325 (390)
T d1qopb_ 246 DTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVS 325 (390)
T ss_dssp CTTSEEEEEEEEETBGGGTBSCCHHHHSEEEEETEEEEEECBCTTSCBCCCCCSSGGGCCSSCCHHHHHHHHTTSSEEEE
T ss_pred ccceeEeccccccccccccccccccccCcccccccccccccccCCCccccccccccccccccchhHHHHHHhcCceEEEE
Confidence 45799999999754332210 00 0001 1233455688999
Q ss_pred eCHHHHHHHHHHHHHhcCccccC
Q 019047 325 VTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 325 Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
|+|+|+++|++.|++.|||+++|
T Consensus 326 vtD~Ea~~a~~~La~~EGI~~a~ 348 (390)
T d1qopb_ 326 ITDDEALEAFKTLCRHEGIIPAL 348 (390)
T ss_dssp EEHHHHHHHHHHHHHHHSCCBCH
T ss_pred ECHHHHHHHHHHHHHhcCCeecC
Confidence 99999999999999999999764
|
| >d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine synthase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=4.7e-44 Score=342.95 Aligned_cols=256 Identities=21% Similarity=0.164 Sum_probs=218.3
Q ss_pred HHHHhccCCCCchhhhhhhccCCCceeeccc--cccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCCeEE
Q 019047 82 EKEEGNDFHGVNIAEDVTQLIGRTPMVYLNK--VTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGKTVL 159 (347)
Q Consensus 82 ~~~~~~~~~~~~~~~~v~~~~~~TPLv~~~~--l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~v 159 (347)
++.|++++|.....+.+++++|+|||+++++ +++++|++||+|+|++|||||||+|++.+++.++++.|. ..+
T Consensus 6 ~~~~~~~lp~~~~~~~i~~~~gnTPLv~l~~~~l~~~~g~~i~~K~E~~nptGSfK~R~a~~~i~~a~~~g~-----~~i 80 (351)
T d1v7ca_ 6 IERYRNLLPVSEKTPVISLLEGSTPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGMTLAVSKAVEGGA-----QAV 80 (351)
T ss_dssp HHHTGGGSSCCTTSCCCCSCCCCCCEEECCCCHHHHTTTEEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTC-----SEE
T ss_pred HHHHHHHCCCCCCCCccccCCCCCCCeECCCcchhhccCCEEEEEEcCCCCccChHHHHHHHHHHHHHhcCC-----Cee
Confidence 4559999999887788999999999999986 556788999999999999999999999999999999885 568
Q ss_pred EEeCCChhHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecCCCC
Q 019047 160 VEPTTGNTGLGIAFVAAVKGYKLIVTMPAST-NLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQQFD 238 (347)
Q Consensus 160 v~assGN~g~AlA~aa~~~Gl~~~I~vp~~~-~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~~~~ 238 (347)
+++|+||||.++|++|+.+|++|+|+||.+. +..+..+|+.+||+|+.+++ +++++++.+.+++++. ++++. ++.
T Consensus 81 v~~SsGN~g~a~a~~a~~~g~~~~i~~p~~~~~~~~~~~~~~~Ga~vi~~~~--~~~~~~~~a~~l~~~~-~~~~~-~~~ 156 (351)
T d1v7ca_ 81 ACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVEG--NFDDALRLTQKLTEAF-PVALV-NSV 156 (351)
T ss_dssp EEECSSHHHHHHHHHHHHHTCEEEEEEETTCSCHHHHHHHHHTTCEEEEEES--CHHHHHHHHHHHHHHS-SCEEC-STT
T ss_pred eeeccccHHHHHHHHHhhhcccceeecCCchHHHHHHHhhhcCCCceEeecc--ccchhhhhHHHHhhhh-ccccc-ccc
Confidence 9999999999999999999999999999875 57788889999999999985 4688999999999986 55555 445
Q ss_pred ChHHHHHHHHHHHHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhc------CCCCeEEEEcCCCCccccCCCC-----
Q 019047 239 NMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMM------NKEIKVVGVEPAERSVISGENA----- 307 (347)
Q Consensus 239 n~~~~~~g~~ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~------~~~~~vigVep~~~~~~~g~~~----- 307 (347)
++.++ .||.|+++||++|+...+|++++++|+||+++|++.+++.. .+.+++++|++..+.......+
T Consensus 157 ~~~~~-~g~~t~~~Ei~eQl~~~~d~~~~~~g~gg~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 235 (351)
T d1v7ca_ 157 NPHRL-EGQKTLAFEVVDELGDAPHYHALPVGNAGNITAHWMGYKAYHALGKAKRLPRMLGFQAAGAAPLVLGRPVERPE 235 (351)
T ss_dssp SHHHH-HHHTHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHHHHHHHHHTTSCSSCCEEEEEEEGGGCHHHHTSCCSSCC
T ss_pred Cchhh-hhhhhHHHHHHHHHhhhccceeeeecccCCcchhHHHHHHHhhcccccCCcceeeeeccccchhhhcccccCCc
Confidence 77776 69999999999999889999999999999999999887653 4678999999987643322111
Q ss_pred -------------CCCchhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 308 -------------GYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 308 -------------~~~p~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
...++.+.++..+.++.|+|+|++++++.|+++|||++||
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~ea~~a~~~l~~~eGi~v~p 288 (351)
T d1v7ca_ 236 TLATAIRIGNPASWQGAVRAKEESGGVIEAVTDEEILFAYRYLAREEGIFCEP 288 (351)
T ss_dssp CSCGGGCCSSCTTHHHHHHHHHHHTCEEEEECHHHHHHHHHHHHHHTCCCBCH
T ss_pred ccccccccccCcccchhhhhhhccCcEEEEEchHHHHHHHHHHHHHcCcEECH
Confidence 1112334566788899999999999999999999999997
|
| >d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Tryptophan synthase, beta-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=3.3e-44 Score=349.81 Aligned_cols=278 Identities=21% Similarity=0.230 Sum_probs=218.0
Q ss_pred CCCCCCCcccchhhHHHHHHHhccCCCCchhh---hhhh-ccC-CCceeeccccccCC-CCeEEEEeCCCCCCCchhHHH
Q 019047 65 AASSSSSSLYATSTREIEKEEGNDFHGVNIAE---DVTQ-LIG-RTPMVYLNKVTEGC-VGNVAAKLESMEPCRSVKDRI 138 (347)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~-~~~-~TPLv~~~~l~~~~-g~~Iy~K~E~~~ptGSfK~Rg 138 (347)
+....-|+...+...||.+.|.......+... ++.. +++ ||||+++++|++.+ |++||+|+|++|||||||||+
T Consensus 6 ~~~~~~pe~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~rpTPLi~~~~Ls~~lgg~~Iy~K~E~lnptGS~KdR~ 85 (386)
T d1v8za1 6 FGGQYVPETLIEPLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNN 85 (386)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCSCCEEECHHHHHHHTSSEEEEEEGGGSTTSBTHHHH
T ss_pred cCCEeCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCCcceEhHhhHHhcCCCeEEEEeccCCCCCCccchH
Confidence 44555666677788999999988776654333 3333 344 79999999999977 589999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCC---CCCHHHHHHHHhcCCEEEEECC-CCCh
Q 019047 139 GYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA---STNLERRILLRAFGAEIILTDP-EKGL 214 (347)
Q Consensus 139 a~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~---~~~~~~~~~l~~~GA~V~~~~~-~~~~ 214 (347)
+..++..|++.|. .++++++|+||||.++|++|+.+|++|+||||. ..+..|+.+++.+||+|+.+++ ..++
T Consensus 86 a~~~i~~a~~~G~----~~~v~~~s~Gn~g~a~A~aaa~~G~~~~i~mp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~ 161 (386)
T d1v8za1 86 AIGQALLAKFMGK----TRLIAETGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTL 161 (386)
T ss_dssp HHHHHHHHHHTTC----CEEEEEESSSHHHHHHHHHHHHTTCEEEEEEEHHHHTTCHHHHHHHHHTTCEEEEECSTTSSH
T ss_pred HHHHHHHHhhcCC----ceeEeecccchHHHHHHHHHHHcCCcccccccchhhhhhHHHHHHHHhcCCeEEEecCCcchH
Confidence 9999999999997 567899999999999999999999999999995 4567899999999999999874 3357
Q ss_pred HHHHHHHHHHHHcCC-Cce-----ecCCCCChHHHHHHHHHHHHHHHHhh----CCCCCEEEEecCcchHHHHHHHHHHh
Q 019047 215 RGALDKAEEIVLNTP-NAY-----MFQQFDNMANLKIHFDSTGPEIWEDT----LGCVDIFVAAIGTGGTITGTGRFLKM 284 (347)
Q Consensus 215 ~~a~~~a~~~a~~~~-~~~-----~~~~~~n~~~~~~g~~ti~~Ei~~ql----~~~~D~vv~pvG~Gg~~~Gi~~~~k~ 284 (347)
.+++.++.+...... ... ...++.++.++..||.+++.||.+|+ +..||+||+|+|+|++++|+..++++
T Consensus 162 ~da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~q~~~~~g~~pd~vv~~vGgG~~~~g~~~~~~~ 241 (386)
T d1v8za1 162 KDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFVN 241 (386)
T ss_dssp HHHHHHHHHHHHHHTTTEEECCCSSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHGGGTT
T ss_pred HHHHHHHHHHHHhhhhhhhhccccccCccccchhhhccchhhhhhHHHHHHHhcCCCCCEEEECCCChHHHHHHHHHhhh
Confidence 788877766554322 222 23456667777779999999998887 45799999999999999999776554
Q ss_pred cCCCCeEEEEcCCCCccccCC---------------------------C--C----------CCCc--hhccccccCeEE
Q 019047 285 MNKEIKVVGVEPAERSVISGE---------------------------N--A----------GYVP--SILDVQLLDEVI 323 (347)
Q Consensus 285 ~~~~~~vigVep~~~~~~~g~---------------------------~--~----------~~~p--~~l~~~~vd~~v 323 (347)
++++++|+|||.++....+. . + ...+ ..+.....++++
T Consensus 242 -~~~v~iigvep~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v 320 (386)
T d1v8za1 242 -DKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYV 320 (386)
T ss_dssp -CTTSEEEEEEEEETBGGGTBSCCHHHHCEEEEETTEEEEECBCTTSCBCCCCCSSTTSCCSBCCHHHHHHHHTTSEEEE
T ss_pred -ccCceEEEEecCcccccccccccccccCccccccchhheeccCCCCcccccccccccccccccchHHHHHHhcCceEEE
Confidence 67999999999765433220 0 0 0000 112234456899
Q ss_pred EeCHHHHHHHHHHHHHhcCccccC
Q 019047 324 KVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 324 ~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
+|+|+|+++++++|+++|||++||
T Consensus 321 ~VtD~E~~~a~~~La~~EGI~~~~ 344 (386)
T d1v8za1 321 TVTDEEALKAFHELSRTEGIIPAL 344 (386)
T ss_dssp EEEHHHHHHHHHHHHHHHSCCBCH
T ss_pred EECHHHHHHHHHHHHHhcCCeecc
Confidence 999999999999999999999886
|
| >d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine synthase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=4.4e-42 Score=343.52 Aligned_cols=261 Identities=16% Similarity=0.132 Sum_probs=216.0
Q ss_pred HHHHHHhc-cCCCCchhhhhhhccCCCceeeccccccC-CC-CeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCCC
Q 019047 80 EIEKEEGN-DFHGVNIAEDVTQLIGRTPMVYLNKVTEG-CV-GNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPGK 156 (347)
Q Consensus 80 ~~~~~~~~-~~~~~~~~~~v~~~~~~TPLv~~~~l~~~-~g-~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g~ 156 (347)
.+|+ |++ ++|..+....|++++|+|||+++++|+++ +| .+||+|+|++|||||||||++.+++..+.+.+....+.
T Consensus 97 g~wr-~~~~~lp~~~~~~~v~lgeG~TPLv~~~~L~~~~lG~~~ly~K~E~~nPTGSfKDRga~~~i~~a~~~~~~~~~~ 175 (477)
T d1e5xa_ 97 GVWS-KKEWVLPEIDDDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPV 175 (477)
T ss_dssp TTGG-GGGGTCTTCCGGGCCCCCCCCCCEEECHHHHHHHHCCSSEEEEETTSSTTSBTTHHHHHHHHHHHHHHHHTTCCC
T ss_pred Ccee-ehhhcCCCCCCCCccccCCCCCceEEchhhhHhhCCCceEEEEECCCCCCcccHHHHHHHHHHHHHHhccccCCc
Confidence 5677 555 58888888889999999999999999986 56 48999999999999999999999999998766555555
Q ss_pred eEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCC-CCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCCCceecC
Q 019047 157 TVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS-TNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTPNAYMFQ 235 (347)
Q Consensus 157 ~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~-~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~~~~~~~ 235 (347)
.+|+++|+||||.|+|++|+.+|++|+||||.+ .+..|+.+++.+||+|+.+++ +++++.+.+.+++++. + +|..
T Consensus 176 ~~vv~aSsGNtg~AlAa~aa~~Gi~~~I~~P~~~~s~~k~~~~~~~GA~V~~v~g--~~dda~~~~~e~a~~~-~-~~~~ 251 (477)
T d1e5xa_ 176 VGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSIDT--DFDGCMKLIREITAEL-P-IYLA 251 (477)
T ss_dssp CEEEECCCSHHHHHHHHHHHHHTCCEEEEEEGGGCCHHHHHHHHHTTCEEEEEES--CHHHHHHHHHHHHHHS-C-EEEG
T ss_pred ceEEeecCchHHHHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHhcCcccccccc--CchhhHHHhhhhcccc-c-eecc
Confidence 679999999999999999999999999999985 788999999999999999986 4789999999998875 4 4556
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhCC-CCCEEEEecCcchHHHHHHHHHHhc------CCCCeEEEEcCCCCccc-----c
Q 019047 236 QFDNMANLKIHFDSTGPEIWEDTLG-CVDIFVAAIGTGGTITGTGRFLKMM------NKEIKVVGVEPAERSVI-----S 303 (347)
Q Consensus 236 ~~~n~~~~~~g~~ti~~Ei~~ql~~-~~D~vv~pvG~Gg~~~Gi~~~~k~~------~~~~~vigVep~~~~~~-----~ 303 (347)
++.|+.++ .||+|+++||.+|+++ .||+|++|+|+|+++.|++.++++. ...+++++|++.+++.+ .
T Consensus 252 ~~~N~~~~-~g~~t~~~Ei~~ql~~~~pd~v~vp~G~gg~~~g~~~g~~~l~~~G~~~~~P~~~~v~a~~~~~~~~~~~~ 330 (477)
T d1e5xa_ 252 NSLNSLRL-EGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIYAFYKGFKMCQELGLVDRIPRMVCAQAANANPLYLHYKS 330 (477)
T ss_dssp GGSHHHHH-HHHTHHHHHHHHHTTSCCCSEEEEECSSTHHHHHHHHHHHHHHHTTSSSCCCEEEEEEETTSSTHHHHHHT
T ss_pred cccccccc-hhhhHHHHHHHHhhccccceeeeecccCCcchhhHHHHHHHHhhcCccccCceEEEEeccchhhHHHHHHc
Confidence 67888887 5999999999999975 6999999999999999999998864 34579999999987433 2
Q ss_pred CCC-------------------CCCCchhc--cccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 304 GEN-------------------AGYVPSIL--DVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 304 g~~-------------------~~~~p~~l--~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
|.. +...+..+ .++.-+.++.|+|+|+.++++ ++++|||+++|
T Consensus 331 g~~~~~~~~~~~T~a~~i~i~~p~~~~~~l~~~~~~~g~~~~VsDeei~~a~~-l~~~eGi~veP 394 (477)
T d1e5xa_ 331 GWKDFKPMTASTTFASAIQIGDPVSIDRAVYALKKCNGIVEEATEEELMDAMA-QADSTGMFICP 394 (477)
T ss_dssp TTTTCCC----------------CCCHHHHHHHHHTTCEEEEECHHHHHHHHH-HHHHTTCCCCH
T ss_pred CCCcccccccccccccccccccccchHHHHHHHhhcCceEEecCHHHHHHHHH-HHHHCCcEECh
Confidence 210 01111111 123345689999999999887 56789999987
|
| >d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: 1-aminocyclopropane-1-carboxylate deaminase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=2.3e-36 Score=284.37 Aligned_cols=248 Identities=18% Similarity=0.172 Sum_probs=189.9
Q ss_pred hhhhhccCCCceeeccccccCCCCeEEEEeCCCC--CCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHH
Q 019047 96 EDVTQLIGRTPMVYLNKVTEGCVGNVAAKLESME--PCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAF 173 (347)
Q Consensus 96 ~~v~~~~~~TPLv~~~~l~~~~g~~Iy~K~E~~~--ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~ 173 (347)
++++...++|||+++++|++.+|++||+|+|++| |+||||+|++.+++.+++++|.. ...++++|+||||.|+|+
T Consensus 13 p~i~l~~~~TPL~~~~~L~~~~G~~v~iK~Ed~~~~~tgS~K~R~~~~~i~~a~~~g~~---~~~~~~~s~gN~g~a~A~ 89 (325)
T d1j0aa_ 13 PRVELIPWETPIQYLPNISREIGADVYIKRDDLTGLGIGGNKIRKLEYLLGDALSKGAD---VVITVGAVHSNHAFVTGL 89 (325)
T ss_dssp CCCCCCCSCCCEEECHHHHHHHTSEEEEEEGGGSCSTTCSTHHHHHHHHHHHHHHTTCS---EEEEECCTTCHHHHHHHH
T ss_pred CcccCCCCCCceeEHHHhHHHHCCEEEEEecCCCCCCcchhHHHHHHHHHHHHHHCCCC---eeEEEeeCcchHHHHHHH
Confidence 4578899999999999999999999999999877 89999999999999999998851 233456788999999999
Q ss_pred HHHHcCCcEEEEeCCCCCHHHHHHHHhc---CCEEEEECCCCChHHHHHH-HHHHHHcCCCceec-CCCCChHHHHHHHH
Q 019047 174 VAAVKGYKLIVTMPASTNLERRILLRAF---GAEIILTDPEKGLRGALDK-AEEIVLNTPNAYMF-QQFDNMANLKIHFD 248 (347)
Q Consensus 174 aa~~~Gl~~~I~vp~~~~~~~~~~l~~~---GA~V~~~~~~~~~~~a~~~-a~~~a~~~~~~~~~-~~~~n~~~~~~g~~ 248 (347)
+|+.+|++|++|||...+..+...+..+ |++++..+.........+. +.+......+.+++ .++.++.. ..++.
T Consensus 90 ~a~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 168 (325)
T d1j0aa_ 90 AAKKLGLDAILVLRGKEELKGNYLLDKIMGIETRVYDAKDSFELMKYAEEIAEELKREGRKPYVIPPGGASPIG-TLGYV 168 (325)
T ss_dssp HHHHTTCEEEEEEESCCCSCHHHHHHHHTTCEEEEESCCSTTTHHHHHHHHHHHHTTSSCCEEEECGGGCSHHH-HTHHH
T ss_pred HHhhhcCceEEEeecccccchhhhhccccceeEEeccCcccccchHHHHHHHHHHHhhccCceeeecCCCcccc-ccccc
Confidence 9999999999999998776665655544 3444433322211112222 22222233344444 44444444 46899
Q ss_pred HHHHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccccC-------------CCCCCCchhcc
Q 019047 249 STGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG-------------ENAGYVPSILD 315 (347)
Q Consensus 249 ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~g-------------~~~~~~p~~l~ 315 (347)
+++.|+.+|.+..+|+||+|+|+|+++.|+..+++...+++++++|++........ ...+...+...
T Consensus 169 ~~~~e~~~~~~~~~d~vv~~~G~G~~~~gi~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (325)
T d1j0aa_ 169 RAVGEIATQSEVKFDSIVVAAGSGGTLAGLSLGLSILNEDIRPVGIAVGRFGEVMTSKLDNLIKEAAELLGVKVEVRPEL 248 (325)
T ss_dssp HHHHHHHHHCCCCCSEEEEEESSSHHHHHHHHHHHHTTCCCEEEEEECSSCSSSHHHHHHHHHHHHHHHTTCCCCSCCEE
T ss_pred hhhcccccccccccceeecccccchhhhhHHHHHHhhCccccccccccccchhhhhhhhcccccccccccCCCcccchhh
Confidence 99999999998899999999999999999999999999999999999987532111 22233334445
Q ss_pred ccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 316 VQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 316 ~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.+..+..+.|+|+|+++++++|+++|||+++|
T Consensus 249 ~~~~~~~~~v~d~e~~~a~~~l~~~eGI~~eP 280 (325)
T d1j0aa_ 249 YDYSFGEYGKITGEVAQIIRKVGTREGIILDP 280 (325)
T ss_dssp EECSTTSTTCCCHHHHHHHHHHHHHHSCCCCT
T ss_pred hhceecceeechHHHHHHHHHHHHHcCCcCCh
Confidence 56778889999999999999999999999987
|
| >d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Pseudomonas sp., strain ACP [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: 1-aminocyclopropane-1-carboxylate deaminase species: Pseudomonas sp., strain ACP [TaxId: 306]
Probab=100.00 E-value=2.5e-35 Score=275.18 Aligned_cols=248 Identities=20% Similarity=0.134 Sum_probs=187.8
Q ss_pred hhhhhhccCCCceeeccccccCCC--CeEEEEeCCCCCCCch---hHHHHHHHHHHHHHcCCCCCCCe-EEEEeCCChhH
Q 019047 95 AEDVTQLIGRTPMVYLNKVTEGCV--GNVAAKLESMEPCRSV---KDRIGYSMITDAEESGDITPGKT-VLVEPTTGNTG 168 (347)
Q Consensus 95 ~~~v~~~~~~TPLv~~~~l~~~~g--~~Iy~K~E~~~ptGSf---K~Rga~~~~~~a~~~G~~~~g~~-~vv~assGN~g 168 (347)
.+|+.+.+++|||+++++|++.+| ++||+|+|++|||||| |+|++.+++.++++.|. +. +++++|+||||
T Consensus 6 ~~r~~l~~g~TPL~~~~~L~~~lg~~~~i~~K~E~~~ptgS~~gnK~R~~~~~i~~a~~~g~----~~v~~~~~s~gN~g 81 (338)
T d1tyza_ 6 FPRYPLTFGPTPIQPLARLSKHLGGKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEALAQGC----DTLVSIGGIQSNQT 81 (338)
T ss_dssp SCCCCCSSSSCCEEECHHHHHHTTSSSEEEEEEGGGSCSSTTCCHHHHHHHHHHHHHHHTTC----CEEEEEEETTCHHH
T ss_pred CCccccCCCCCceeEhHHHHHHHCCCCEEEEEECCCCCCcccccCHHHHHHHHHHHHHHCCC----CeEEEEccCCchHH
Confidence 356889999999999999999877 5899999999999999 99999999999999986 33 34567889999
Q ss_pred HHHHHHHHHcCCcEEEEeCCCCC--------HHHHHHHHhcCCEEEEECCCCCh--H-HHHHHHHHHHHcCCCceecCCC
Q 019047 169 LGIAFVAAVKGYKLIVTMPASTN--------LERRILLRAFGAEIILTDPEKGL--R-GALDKAEEIVLNTPNAYMFQQF 237 (347)
Q Consensus 169 ~AlA~aa~~~Gl~~~I~vp~~~~--------~~~~~~l~~~GA~V~~~~~~~~~--~-~a~~~a~~~a~~~~~~~~~~~~ 237 (347)
.|+|++|+.+|++|+||||...+ ..+.+.++.+|+.++.++...+. . ...+.+........+.++..++
T Consensus 82 ~A~A~~a~~~g~~~~i~~p~~~~~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (338)
T d1tyza_ 82 RQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADVRLVPDGFDIGFRRSWEDALESVRAAGGKPYAIPAG 161 (338)
T ss_dssp HHHHHHHHHHTCEEEEEEECCSSCCCTTTTTSHHHHHHHHTTCEEECCCC-------CHHHHHHHHHHHTTCCEEEECGG
T ss_pred HHHHHHHhhccCcEEEEECCCcchhhhhhhhccccceeeeeccccccccCCcchhHHHHHHHHHhhhhhcccceeeeccc
Confidence 99999999999999999998644 34567888999999998754321 1 1222223333444455555443
Q ss_pred CChHHHHHHHHHHHHHH-----HHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCccccC--------
Q 019047 238 DNMANLKIHFDSTGPEI-----WEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVISG-------- 304 (347)
Q Consensus 238 ~n~~~~~~g~~ti~~Ei-----~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~g-------- 304 (347)
.++..+ .++.+.+.|+ .++.+..||+||+|+|+|+++.|+..+++.....++++++++........
T Consensus 162 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~iv~~~G~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (338)
T d1tyza_ 162 CSDHPL-GGLGFVGFAEEVRAQEAELGFKFDYVVVCSVTGSTQAGMVVGFAADGRADRVIGVDASAKPAQTREQITRIAR 240 (338)
T ss_dssp GTSSTT-TTTHHHHHHHHHHHHHHHHTSCCSEEEEEESSSHHHHHHHHHHHTTTCGGGEEEEECSSCHHHHHHHHHHHHH
T ss_pred CccCcc-ccccccchHHHHHHHHHhcCCCccEEEEeecChhHHHHHHHHHHHHhhhhcccceeeccchhhhccccccccc
Confidence 333322 2444444333 33445689999999999999999999999999999999999887632211
Q ss_pred -------CC--CCCCchhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 305 -------EN--AGYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 305 -------~~--~~~~p~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
.. .....+.+..+.++..+.|+|+|++++++.|++.|||+++|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~ei~~a~~~l~~~eGI~~eP 292 (338)
T d1tyza_ 241 QTAEKVGLERDIMRADVVLDERFAGPEYGLPNEGTLEAIRLCARTEGMLTDP 292 (338)
T ss_dssp HHHHHHTCSSCCCGGGCEEECTTSCSBTTBCCHHHHHHHHHHHHHHSCCCCT
T ss_pred cccccccccCcccchhhhhhhhcccceEEEChHHHHHHHHHHHHHhCCcCCh
Confidence 11 12233455677889999999999999999999999999987
|
| >d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Yeast (Hansenula saturnus) [TaxId: 4906]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: 1-aminocyclopropane-1-carboxylate deaminase species: Yeast (Hansenula saturnus) [TaxId: 4906]
Probab=100.00 E-value=3.6e-34 Score=268.30 Aligned_cols=249 Identities=19% Similarity=0.156 Sum_probs=193.6
Q ss_pred hhhhhhhccCCCceeeccccccCCC--CeEEEEeCCCCCCCch---hHHHHHHHHHHHHHcCCCCCCCe-EEEEeCCChh
Q 019047 94 IAEDVTQLIGRTPMVYLNKVTEGCV--GNVAAKLESMEPCRSV---KDRIGYSMITDAEESGDITPGKT-VLVEPTTGNT 167 (347)
Q Consensus 94 ~~~~v~~~~~~TPLv~~~~l~~~~g--~~Iy~K~E~~~ptGSf---K~Rga~~~~~~a~~~G~~~~g~~-~vv~assGN~ 167 (347)
..+++.+++++|||+++++|++.+| ++||+|+|++||+||| |+|++.+++.++++.|. +. +++++|+|||
T Consensus 5 ~~~~~~l~~~~TPl~~~~~L~~~lg~~~~i~~K~E~~~p~GSf~gnK~R~~~~~i~~a~~~g~----~~i~~~~as~gN~ 80 (341)
T d1f2da_ 5 KFAKYPLTFGPSPISNLNRLSQHLGSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGDY----THLVSIGGRQSNQ 80 (341)
T ss_dssp SSCCCCCSSSSCCEEECHHHHHHTTTCSEEEEEEGGGSCSSTTCCHHHHHHTTTHHHHHHSCC----SEEEEEEETTCHH
T ss_pred cccCccCCCCCCceeEHHHHHHHHCCCCEEEEEECCCCCCCccccChHHHHHHHHHHHHHCCC----CEEEEEccCcchH
Confidence 3456788999999999999999887 4899999999999999 99999999999999986 33 3467888999
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCCCHH-----------HHHHHHhcCCEEEEECCCCCh--HHHHHHHHHHHH-cCCCcee
Q 019047 168 GLGIAFVAAVKGYKLIVTMPASTNLE-----------RRILLRAFGAEIILTDPEKGL--RGALDKAEEIVL-NTPNAYM 233 (347)
Q Consensus 168 g~AlA~aa~~~Gl~~~I~vp~~~~~~-----------~~~~l~~~GA~V~~~~~~~~~--~~a~~~a~~~a~-~~~~~~~ 233 (347)
|.|+|++|+.+|++|+||||.+.+.. +...++.+|+++..++..... ..+.....+... .....++
T Consensus 81 g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (341)
T d1f2da_ 81 TRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADVRVIEDGFDIGMRKSFANALQELEDAGHKPYP 160 (341)
T ss_dssp HHHHHHHHHHHTCEEEEEEECCSCCCGGGTTTTTTSHHHHHHHHTTCEEEECCCCCCSSCCHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHhcCceEEEccCCCCHHHHHHHHHhhccceechhhccccccccCCchhhHHHHHHHHHHHHHHhhccCccc
Confidence 99999999999999999999876643 456778899999998754321 233333333333 3333333
Q ss_pred cCC--CCChHHHHHHHHHHHHHHHHhh---CCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCcccc-----
Q 019047 234 FQQ--FDNMANLKIHFDSTGPEIWEDT---LGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSVIS----- 303 (347)
Q Consensus 234 ~~~--~~n~~~~~~g~~ti~~Ei~~ql---~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~----- 303 (347)
... ..++... .++.+++.|+.+|+ ...+|++|+|+|+|++++|+..+++.....++++++++.......
T Consensus 161 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (341)
T d1f2da_ 161 IPAGCSEHKYGG-LGFVGFADEVINQEVELGIKFDKIVVCCVTGSTTAGILAGMAQYGRQDDVIAIDASFTSEKTKEQTL 239 (341)
T ss_dssp ECGGGTTSTTTT-THHHHHHHHHHHHHHHHTCCCSEEEEEESSSHHHHHHHHHHGGGTCGGGEEEEECSSCHHHHHHHHH
T ss_pred cCCcccccccch-hhehhhhHHHHHHHhhccCCceEEEEecccccchhhHHHHHHHhcccccccccccccchhhhhhhhh
Confidence 322 2233333 47778887877765 458999999999999999999999999999999999988653111
Q ss_pred ----------CCCCCCCchhccccccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 304 ----------GENAGYVPSILDVQLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 304 ----------g~~~~~~p~~l~~~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
....+...+.+..+..+..+.|+|+|+++++++|+++|||+++|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~eGI~veP 293 (341)
T d1f2da_ 240 RIANNTAKLIGVEHEFKDFTLDTRFAYPCYGVPNEGTIEAIRTCAEQEGVLTDP 293 (341)
T ss_dssp HHHHHHHHHHTCCCCCSCCCEECTTSTTBTTBCCHHHHHHHHHHHHHHSCCCCT
T ss_pred ccccccccccccCCCccccccccccceeEEEEChHHHHHHHHHHHHHhCcccCh
Confidence 12234444555667788899999999999999999999999987
|
| >d1vb3a1 c.79.1.1 (A:1-428) Threonine synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine synthase species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=9.8e-19 Score=170.30 Aligned_cols=260 Identities=14% Similarity=0.055 Sum_probs=175.0
Q ss_pred hHHHHHHHhc-cCCCCchhhhhhhccC-CCceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHHHHcCCCCCC
Q 019047 78 TREIEKEEGN-DFHGVNIAEDVTQLIG-RTPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDAEESGDITPG 155 (347)
Q Consensus 78 ~~~~~~~~~~-~~~~~~~~~~v~~~~~-~TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a~~~G~~~~g 155 (347)
..++++.|-. .+|.......+...+. ..|+.++.. ++|+......||+|||||++..+...+...+. .+
T Consensus 55 a~~i~~~f~~~~~~~~~l~~~~~~~~~~~~p~~~~~~-------~~~~lELfhGPT~aFKD~a~~~~~~~~~~~~~--~~ 125 (428)
T d1vb3a1 55 SAKILSAFIGDEIPQEILEERVRAAFAFPAPVANVES-------DVGCLELFHGPTLAFKDFGGRFMAQMLTHIAG--DK 125 (428)
T ss_dssp HHHHHHHHHGGGSCHHHHHHHHHHHCCSCCCEEEEET-------TEEEEECCCSTTSBTHHHHHHHHHHHHHHHTT--TC
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHhcCCccceeccC-------CceeeeeccCCCcccccchhhHHHHHHhhhcc--cc
Confidence 3455565532 3333222233333333 467766542 68988888889999999999887655544322 22
Q ss_pred CeEEEEeCCChhHHHHHHHHHHc-CCcEEEEeCC-CCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHHcCC----
Q 019047 156 KTVLVEPTTGNTGLGIAFVAAVK-GYKLIVTMPA-STNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVLNTP---- 229 (347)
Q Consensus 156 ~~~vv~assGN~g~AlA~aa~~~-Gl~~~I~vp~-~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~~~~---- 229 (347)
..+|++|||||+|.|++.+++.. +++++|+.|+ .++..++.+|..+|++|+.+.-++++|++.+.+.++..+..
T Consensus 126 ~~~Il~ATSGDTG~Aa~~a~~~~~~i~~~vl~P~g~vS~~Q~~Qmtt~g~nv~vi~V~G~fDDcq~lvk~~f~d~~~~~~ 205 (428)
T d1vb3a1 126 PVTILTATSGDTGAAVAHAFYGLPNVKVVILYPRGKISPLQEKLFCTLGGNIETVAIDGDFDACQALVKQAFDDEELKVA 205 (428)
T ss_dssp CEEEEEECSSSHHHHHHHHTTTCTTEEEEEEEETTCSCHHHHHHHHSCCTTEEEEEEESCHHHHHHHHHHGGGCHHHHHH
T ss_pred cceeeecCCCCcchhHHHHHhCccccceEEEecCCCCcHHHHHHHhhccCCceEEecCCChhHHHHHHHHHhhhhhhhhc
Confidence 46799999999999999887766 5899999997 58999999999999988665444568999988888775421
Q ss_pred CceecCCCCChHHHHHHHHHHHHHHHHhhCC---CCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCCcc----c
Q 019047 230 NAYMFQQFDNMANLKIHFDSTGPEIWEDTLG---CVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAERSV----I 302 (347)
Q Consensus 230 ~~~~~~~~~n~~~~~~g~~ti~~Ei~~ql~~---~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~----~ 302 (347)
........-|..++ .+|.+..+|++.|+.. .++.|++|+|++|++.|.+.+.++-.|--++|...-.+..+ .
T Consensus 206 ~~l~s~NSIN~~Rl-~~Q~vyyf~a~~ql~~~~~~~~~~~VPtGNfGni~Ag~~Ak~mGLPi~~~i~AtN~Ndil~~f~~ 284 (428)
T d1vb3a1 206 LGLNSANSINISRL-LAQICYYFEAVAQLPQETRNQLVVSVPSGNFGDLTAGLLAKSLGLPVKRFIAATNVNDTVPRFLH 284 (428)
T ss_dssp HTEECCSTTSHHHH-HHTTHHHHHHHTTSCTTTTTSEEEEEECSSCHHHHHHHHHHHTTCCCSEEEEEECSCCHHHHHHH
T ss_pred CCeeeecccChhHH-hhhHHHHHHHHHHhccccCCceEEeccHHHHHHHHHHHHhhhcCCceeeeecccccCccchhhhh
Confidence 01122223566676 5999999999999853 47899999999999999887777766666777776554321 1
Q ss_pred cCCC----------C---CCCchhcc------c----cccCeEEEeCHHHHHHHHHHHHHhcCccccC
Q 019047 303 SGEN----------A---GYVPSILD------V----QLLDEVIKVTNDEAVNMARRLALEEGLLVMC 347 (347)
Q Consensus 303 ~g~~----------~---~~~p~~l~------~----~~vd~~v~Vsd~ea~~a~~~La~~eGI~~G~ 347 (347)
+|.. + -..|.++. . +.......+.|+|..+.+++..++.|+++-|
T Consensus 285 tG~y~~~~~~~TlSpAMDI~~pSNfERl~~l~~~~~~~l~~~~~~~~dde~~~~i~~~~~~~gyi~DP 352 (428)
T d1vb3a1 285 DGQWSPKATQATLSNAMDVSQPNNWPRVEELFRRKIWQLKELGYAAVDDETTQQTMRELKELGYTSEP 352 (428)
T ss_dssp HSCCCCCCCCCCSSGGGCCSSCTTHHHHHHHHHHTTCCGGGSEEEECCHHHHHHHHHHHHHTTCCCCH
T ss_pred CCceecccccccCchHhhhcccCCHHHHHHHHHhhhhhhcccceeeccHHHHHHHHHHHHHcCceeCC
Confidence 2310 0 01122211 1 1123355666677777777777788988765
|
| >d1kl7a_ c.79.1.1 (A:) Threonine synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes family: Tryptophan synthase beta subunit-like PLP-dependent enzymes domain: Threonine synthase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.21 E-value=9e-10 Score=108.29 Aligned_cols=192 Identities=15% Similarity=-0.003 Sum_probs=128.6
Q ss_pred CceeeccccccCCCCeEEEEeCCCCCCCchhHHHHHHHHHHH---H-HcC-C---CCCCCeEEEEeCCChhHHHHHHHHH
Q 019047 105 TPMVYLNKVTEGCVGNVAAKLESMEPCRSVKDRIGYSMITDA---E-ESG-D---ITPGKTVLVEPTTGNTGLGIAFVAA 176 (347)
Q Consensus 105 TPLv~~~~l~~~~g~~Iy~K~E~~~ptGSfK~Rga~~~~~~a---~-~~G-~---~~~g~~~vv~assGN~g~AlA~aa~ 176 (347)
+||+++. .+...++|+--=...||.+|||.++-.+.... . +.+ . ....+.+|+.||+|.+|.|.+.+++
T Consensus 96 ~pl~~~~---~~~~~~~~vlELfhGPT~aFKD~a~~~l~~~~~~~l~~~~~~~~~~~~~~~~il~aTSGDTG~Aa~~af~ 172 (511)
T d1kl7a_ 96 TPLVQNV---TGDKENLHILELFHGPTYAFKDVALQFVGNLFEYFLQRTNANLPEGEKKQITVVGATSGDTGSAAIYGLR 172 (511)
T ss_dssp SCEECCT---TCSSSCEEEEECCCSTTSBTHHHHHHHHHHHHHHHHHHHHTTSCSSSCCCEEEEEECSSSHHHHHHHHHT
T ss_pred Ccccccc---cCCCCceEEEeeccCCcccccCcchhhHHHHHHHHHHhcccccccccCceEEEEEecCCCccHHHHHHhc
Confidence 6777642 22223688766666799999999998776433 2 211 0 1122568999999999999999987
Q ss_pred -HcCCcEEEEeCCC-CCHHHHHHHHhcCC-EEEEECCCCChHHHHHHHHHHHHcCC-CceecCCCCChHHH--HHHHHHH
Q 019047 177 -VKGYKLIVTMPAS-TNLERRILLRAFGA-EIILTDPEKGLRGALDKAEEIVLNTP-NAYMFQQFDNMANL--KIHFDST 250 (347)
Q Consensus 177 -~~Gl~~~I~vp~~-~~~~~~~~l~~~GA-~V~~~~~~~~~~~a~~~a~~~a~~~~-~~~~~~~~~n~~~~--~~g~~ti 250 (347)
.-+++++|+.|++ +++..+.+|...++ +|+.+.-++++|++.....++..+.. ...+-....|..|| ...|.+.
T Consensus 173 ~~~~i~v~vlyP~~~vS~iQ~~Qmtt~~~~Nv~~i~v~G~fDDcq~~vk~~f~d~~~~~~~~l~s~NSiNw~Rll~Qivy 252 (511)
T d1kl7a_ 173 GKKDVSVFILYPTGRISPIQEEQMTTVPDENVQTLSVTGTFDNCQDIVKAIFGDKEFNSKHNVGAVNSINWARILAQMTY 252 (511)
T ss_dssp TCTTEEEEEEEETTSSCHHHHHHHHHCCCTTEEEEEESSCHHHHHHHHHHHHHCSSCC--CCBCCCCSCCHHHHHHHHHH
T ss_pred CCCCceeEEeccCCCCchHHHHHHhhcCCceEEEEEeccChHHHHHHHHHHHhhhhhhcccccccccceeehhhhhhHHH
Confidence 4689999999985 89999999988744 77766544578999998888886542 11111223444444 1245444
Q ss_pred HHHHHHhhC----CCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEEcCCCC
Q 019047 251 GPEIWEDTL----GCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGVEPAER 299 (347)
Q Consensus 251 ~~Ei~~ql~----~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~ 299 (347)
..-.+-|+. +++=.++||.|+-|++.+-+.+-+.--|--++|+..-.+.
T Consensus 253 Yf~ay~q~~~~~~~~~v~f~VPTGNfGni~Ag~~Ak~MGLPI~klivAtN~Nd 305 (511)
T d1kl7a_ 253 YFYSFFQATNGKDSKKVKFVVPSGNFGDILAGYFAKKMGLPIEKLAIATNEND 305 (511)
T ss_dssp HHHHHHHHHSSSSCCCEEEEEECSSSHHHHHHHHHHHHTCCCCCEEEEECSCC
T ss_pred HHHHHHHHhhhccCCeeEEEeccCcHHHHHHHHHHHhcCCChheEEEecCCcc
Confidence 444444542 2444799999999999986655555455558888876654
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.78 E-value=0.026 Score=45.42 Aligned_cols=114 Identities=18% Similarity=0.153 Sum_probs=73.8
Q ss_pred HHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHH
Q 019047 143 ITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAE 222 (347)
Q Consensus 143 ~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~ 222 (347)
++++.++..+++|++.+|. ++|.-|...+..++.+|.+++++- ..+.|++.++.+|++.........
T Consensus 15 a~~a~~~~~~~~g~~vlV~-G~G~vG~~~~~~ak~~Ga~vi~v~---~~~~r~~~a~~~ga~~~~~~~~~~--------- 81 (170)
T d1e3ja2 15 GVHACRRAGVQLGTTVLVI-GAGPIGLVSVLAAKAYGAFVVCTA---RSPRRLEVAKNCGADVTLVVDPAK--------- 81 (170)
T ss_dssp HHHHHHHHTCCTTCEEEEE-CCSHHHHHHHHHHHHTTCEEEEEE---SCHHHHHHHHHTTCSEEEECCTTT---------
T ss_pred HHHHHHHhCCCCCCEEEEE-cccccchhhHhhHhhhcccccccc---hHHHHHHHHHHcCCcEEEeccccc---------
Confidence 3455555567888886664 789999999999999998866654 378899999999998765542110
Q ss_pred HHHHcCCCceecCCCCChHHHHHHHHHHHHHHHHhhCCCCCEEEEecCcchHHHHHHHHHHhcCCCCeEEEE
Q 019047 223 EIVLNTPNAYMFQQFDNMANLKIHFDSTGPEIWEDTLGCVDIFVAAIGTGGTITGTGRFLKMMNKEIKVVGV 294 (347)
Q Consensus 223 ~~a~~~~~~~~~~~~~n~~~~~~g~~ti~~Ei~~ql~~~~D~vv~pvG~Gg~~~Gi~~~~k~~~~~~~vigV 294 (347)
++... .-.++.+..+..+|.||-++|+..++. .+++...+.-+++-+
T Consensus 82 ---------------~~~~~-------~~~~~~~~~g~g~D~vid~~g~~~~~~---~a~~~~~~~G~iv~~ 128 (170)
T d1e3ja2 82 ---------------EEESS-------IIERIRSAIGDLPNVTIDCSGNEKCIT---IGINITRTGGTLMLV 128 (170)
T ss_dssp ---------------SCHHH-------HHHHHHHHSSSCCSEEEECSCCHHHHH---HHHHHSCTTCEEEEC
T ss_pred ---------------cccch-------hhhhhhcccccCCceeeecCCChHHHH---HHHHHHhcCCceEEE
Confidence 01111 111333333457899999998865443 344544555555544
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.34 E-value=0.039 Score=44.53 Aligned_cols=65 Identities=26% Similarity=0.310 Sum_probs=50.9
Q ss_pred HHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECC
Q 019047 143 ITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDP 210 (347)
Q Consensus 143 ~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~ 210 (347)
++++.++..+++|++.+| .++|.-|...+..++.+|.+-+|++. ..+.|++..+.+||+.+....
T Consensus 15 a~~a~~~~~~~~gd~VlI-~G~G~iG~~~~~~a~~~G~~~Vi~~d--~~~~rl~~a~~~Ga~~~~~~~ 79 (171)
T d1pl8a2 15 GIHACRRGGVTLGHKVLV-CGAGPIGMVTLLVAKAMGAAQVVVTD--LSATRLSKAKEIGADLVLQIS 79 (171)
T ss_dssp HHHHHHHHTCCTTCEEEE-ECCSHHHHHHHHHHHHTTCSEEEEEE--SCHHHHHHHHHTTCSEEEECS
T ss_pred HHHHHHHhCCCCCCEEEE-ECCCccHHHHHHHHHHcCCceEEecc--CCHHHHHHHHHhCCccccccc
Confidence 456666677888877544 57899999999999999996555554 468899999999998877653
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=95.98 E-value=0.026 Score=45.75 Aligned_cols=62 Identities=23% Similarity=0.198 Sum_probs=50.9
Q ss_pred HHHH-HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEE
Q 019047 144 TDAE-ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (347)
Q Consensus 144 ~~a~-~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~ 208 (347)
+.++ +.+.+++|++++|...+|.-|.++...|+.+|.++++... ++.|++.++.+||+.+.-
T Consensus 17 ~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~---s~~k~~~~~~lGa~~vi~ 79 (179)
T d1qora2 17 YYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVG---TAQKAQSALKAGAWQVIN 79 (179)
T ss_dssp HHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEES---SHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeeccc---chHHHHHHHhcCCeEEEE
Confidence 3444 4567889999888889999999999999999998777665 678889999999986653
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.88 E-value=0.033 Score=44.68 Aligned_cols=63 Identities=17% Similarity=0.229 Sum_probs=48.5
Q ss_pred HHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEEC
Q 019047 143 ITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (347)
Q Consensus 143 ~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~ 209 (347)
++++.++..+++|++.+| .++|.-|...+..++.+|.+++++- ..+.|++..+.+||+.+...
T Consensus 16 a~~al~~~~~~~g~~VlV-~GaG~vG~~~~~~ak~~G~~Vi~~~---~~~~~~~~a~~~Ga~~~i~~ 78 (166)
T d1llua2 16 VYKGLKQTNARPGQWVAI-SGIGGLGHVAVQYARAMGLHVAAID---IDDAKLELARKLGASLTVNA 78 (166)
T ss_dssp HHHHHHHHTCCTTCEEEE-ECCSHHHHHHHHHHHHTTCEEEEEE---SCHHHHHHHHHTTCSEEEET
T ss_pred HHHHHHHhCCCCCCEEEE-eeccccHHHHHHHHHHcCCccceec---chhhHHHhhhccCccccccc
Confidence 345555556788887655 6789999999999999998766553 46889999999999876543
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=95.73 E-value=0.046 Score=44.58 Aligned_cols=65 Identities=23% Similarity=0.286 Sum_probs=53.9
Q ss_pred HHHHH-HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECC
Q 019047 143 ITDAE-ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDP 210 (347)
Q Consensus 143 ~~~a~-~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~ 210 (347)
++.++ +.+.+++|++++|.+.+|.-|.++...|+..|.+++.++. +..|.+.++.+|++.+....
T Consensus 17 A~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~---~~~~~~~~~~~Ga~~vi~~~ 82 (182)
T d1v3va2 17 AYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAG---SDEKIAYLKQIGFDAAFNYK 82 (182)
T ss_dssp HHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCSEEEETT
T ss_pred HHHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCC---CHHHHHHHHhhhhhhhcccc
Confidence 34454 5667889999888899999999999999999999887775 56789999999999876553
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=95.51 E-value=0.015 Score=41.42 Aligned_cols=62 Identities=16% Similarity=0.270 Sum_probs=49.0
Q ss_pred HHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCC
Q 019047 139 GYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGA 203 (347)
Q Consensus 139 a~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA 203 (347)
|+..+....+.+...++++.+|...+|.-|......|+.+|.+++.... ++.|.+.++.+||
T Consensus 16 A~~al~~~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~---s~~k~~~~~~lGA 77 (77)
T d1o8ca2 16 AMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSG---RESTHEYLKSLGA 77 (77)
T ss_dssp HHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEES---CGGGHHHHHHHTE
T ss_pred HHHHHHHHHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEEC---CHHHHHHHHHCCC
Confidence 3333444566777778888899999999999999999999999887765 5577888888886
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.47 E-value=0.079 Score=42.70 Aligned_cols=62 Identities=26% Similarity=0.335 Sum_probs=49.3
Q ss_pred HHHHH-HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 143 ITDAE-ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 143 ~~~a~-~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
+++++ +.+.+++|++++|...+|..|.+....|+.+|.++++.+. ++.|++.++.+||+-+.
T Consensus 16 A~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~---~~~~~~~~~~~Ga~~vi 78 (174)
T d1yb5a2 16 AYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAG---TEEGQKIVLQNGAHEVF 78 (174)
T ss_dssp HHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHhCCCCCCEEEEEeccccccccccccccccCcccccccc---cccccccccccCccccc
Confidence 34453 5667888988777777899999999999999999877764 46788999999997554
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.44 E-value=0.054 Score=43.85 Aligned_cols=62 Identities=26% Similarity=0.449 Sum_probs=50.1
Q ss_pred HHHH-HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEE
Q 019047 144 TDAE-ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (347)
Q Consensus 144 ~~a~-~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~ 208 (347)
+.+. +.+.+++|++.+|.+.+|..|..+...|+.+|.++++... ++.+.+.++.+|++-+..
T Consensus 14 ~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~---~~~~~~~l~~~Ga~~vi~ 76 (183)
T d1pqwa_ 14 WHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAG---SDAKREMLSRLGVEYVGD 76 (183)
T ss_dssp HHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEES---SHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHhCCCCCCEEEEECCCCCcccccchhhccccccceeeec---cccccccccccccccccc
Confidence 3443 5667888888777788899999999999999999888775 467889999999986654
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.44 E-value=0.049 Score=43.41 Aligned_cols=63 Identities=19% Similarity=0.234 Sum_probs=48.3
Q ss_pred HHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECC
Q 019047 144 TDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDP 210 (347)
Q Consensus 144 ~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~ 210 (347)
+.+.+...+++|++.+|. ++|.-|...+..++..|.+++++. .++.|++.++.+|++.+....
T Consensus 17 ~~al~~~~~~~g~~vlv~-G~G~iG~~a~~~a~~~g~~v~~~~---~~~~r~~~~k~~Ga~~~~~~~ 79 (168)
T d1rjwa2 17 YKALKVTGAKPGEWVAIY-GIGGLGHVAVQYAKAMGLNVVAVD---IGDEKLELAKELGADLVVNPL 79 (168)
T ss_dssp HHHHHHHTCCTTCEEEEE-CCSTTHHHHHHHHHHTTCEEEEEC---SCHHHHHHHHHTTCSEEECTT
T ss_pred HHHHHHhCCCCCCEEEEe-ecccchhhhhHHHhcCCCeEeccC---CCHHHhhhhhhcCcceecccc
Confidence 344444457788886665 679999999999999999865543 478899999999999887654
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=95.27 E-value=0.076 Score=43.14 Aligned_cols=65 Identities=25% Similarity=0.291 Sum_probs=48.3
Q ss_pred HHHHHH-HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEEC
Q 019047 142 MITDAE-ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (347)
Q Consensus 142 ~~~~a~-~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~ 209 (347)
-++++. +.+.+++|++++|. ++|.-|......|+.+|.+-++.+. .++.|++.++.+||+.+...
T Consensus 15 ta~~al~~~~~~~~G~~VlV~-GaG~iG~~~~~~ak~~Ga~~Vi~~~--~~~~~~~~a~~lGa~~vi~~ 80 (182)
T d1vj0a2 15 TAYHAFDEYPESFAGKTVVIQ-GAGPLGLFGVVIARSLGAENVIVIA--GSPNRLKLAEEIGADLTLNR 80 (182)
T ss_dssp HHHHHHHTCSSCCBTCEEEEE-CCSHHHHHHHHHHHHTTBSEEEEEE--SCHHHHHHHHHTTCSEEEET
T ss_pred HHHHHHHHHhCCCCCCEEEEE-CCCccchhheecccccccccccccc--cccccccccccccceEEEec
Confidence 345565 55678888876555 6799999999999999985333332 37889999999999766544
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.14 E-value=0.086 Score=43.72 Aligned_cols=64 Identities=27% Similarity=0.273 Sum_probs=50.1
Q ss_pred HHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEEC
Q 019047 143 ITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (347)
Q Consensus 143 ~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~ 209 (347)
.+++.+...+++|++.+| .++|.-|...+..++.+|...+|++. ..+.|++..+.+|++.+...
T Consensus 14 a~~a~~~a~v~~G~tVlV-~GaG~vGl~a~~~ak~~ga~~Vi~~d--~~~~rl~~a~~~Ga~~~~~~ 77 (195)
T d1kola2 14 GYHGAVTAGVGPGSTVYV-AGAGPVGLAAAASARLLGAAVVIVGD--LNPARLAHAKAQGFEIADLS 77 (195)
T ss_dssp HHHHHHHTTCCTTCEEEE-ECCSHHHHHHHHHHHHTTCSEEEEEE--SCHHHHHHHHHTTCEEEETT
T ss_pred HHHHHHHhCCCCCCEEEE-ECcCHHHHHHHHHHHhhcccceeeec--ccchhhHhhhhccccEEEeC
Confidence 345566677889987555 57899999999999999987666654 36889999999999987644
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=95.01 E-value=0.026 Score=45.89 Aligned_cols=63 Identities=27% Similarity=0.329 Sum_probs=50.0
Q ss_pred HHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 142 MITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 142 ~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
-++++.+++.+++|++.+|...+|.-|.+....|+.+|.++++.+. ++.+++.++.+||+.+.
T Consensus 15 TA~~al~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~---~~~~~~~~~~lGa~~~i 77 (171)
T d1iz0a2 15 TAYLALKRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAAS---RPEKLALPLALGAEEAA 77 (171)
T ss_dssp HHHHHHHHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEES---SGGGSHHHHHTTCSEEE
T ss_pred HHHHHHHHhCCCCCCEEEEEeccccchhhhhhhhcccccccccccc---cccccccccccccceee
Confidence 3456666777889988777777899999999999999998776654 35678888899997654
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.01 E-value=0.097 Score=41.88 Aligned_cols=65 Identities=20% Similarity=0.202 Sum_probs=50.8
Q ss_pred HHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEEC
Q 019047 143 ITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (347)
Q Consensus 143 ~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~ 209 (347)
++++.++..++++++.+|...+|.-|...+..++..|...++.... ++.|++.++.+|++.+...
T Consensus 16 a~~al~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~--~~~~~~~~~~~Ga~~~i~~ 80 (170)
T d1jvba2 16 TYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDV--REEAVEAAKRAGADYVINA 80 (170)
T ss_dssp HHHHHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEES--SHHHHHHHHHHTCSEEEET
T ss_pred HHHHHHHhCCCCCCEEEEEeccccceeeeeeccccccccccccccc--chhhHHHHHHcCCceeecc
Confidence 4556666778888887777768999999999999999866665553 5789999999999766543
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=94.66 E-value=0.08 Score=43.04 Aligned_cols=62 Identities=26% Similarity=0.199 Sum_probs=49.0
Q ss_pred HHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 143 ITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 143 ~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
.+++.+...+++|++.+| .++|--|...+..|+.+|.+-++.+.. .+.|++..+.+||+.+.
T Consensus 16 a~~a~~~a~~~~g~~VlI-~GaG~vGl~~~q~ak~~Ga~~Vi~~d~--~~~r~~~a~~lGa~~~i 77 (174)
T d1jqba2 16 GFHGAELADIEMGSSVVV-IGIGAVGLMGIAGAKLRGAGRIIGVGS--RPICVEAAKFYGATDIL 77 (174)
T ss_dssp HHHHHHHTTCCTTCCEEE-ECCSHHHHHHHHHHHTTTCSCEEEECC--CHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHhCCCCCCEEEE-EcCCcchhhhhhhhhcccccccccccc--hhhhHHHHHhhCccccc
Confidence 456677778889988666 578999999999999999865555543 67889999999997654
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=93.86 E-value=0.065 Score=44.00 Aligned_cols=66 Identities=18% Similarity=0.201 Sum_probs=51.6
Q ss_pred HHHH-HcCCCCCCCeEEEE-eCCChhHHHHHHHHHHcCCcEEEEeCCC-CCHHHHHHHHhcCCEEEEEC
Q 019047 144 TDAE-ESGDITPGKTVLVE-PTTGNTGLGIAFVAAVKGYKLIVTMPAS-TNLERRILLRAFGAEIILTD 209 (347)
Q Consensus 144 ~~a~-~~G~~~~g~~~vv~-assGN~g~AlA~aa~~~Gl~~~I~vp~~-~~~~~~~~l~~~GA~V~~~~ 209 (347)
+.+. +.+.+++|++.++. +.+|.-|.+....|+.+|.++++.+... ....+.+.++.+||+.+...
T Consensus 17 ~~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~ 85 (189)
T d1gu7a2 17 YLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITE 85 (189)
T ss_dssp HHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEH
T ss_pred HHHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEec
Confidence 4444 45678888776664 6789999999999999999999888654 34677888999999887653
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.85 E-value=0.061 Score=43.25 Aligned_cols=61 Identities=18% Similarity=0.181 Sum_probs=46.7
Q ss_pred HHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 143 ITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 143 ~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
++++.++..+++|++.+| .++|..|...+..|+.+|.+++++-. ++.|++.++.+||+-+.
T Consensus 16 a~~al~~~~~~~g~~vlI-~GaG~vG~~a~q~ak~~G~~vi~~~~---~~~k~~~a~~lGa~~~i 76 (168)
T d1piwa2 16 VYSPLVRNGCGPGKKVGI-VGLGGIGSMGTLISKAMGAETYVISR---SSRKREDAMKMGADHYI 76 (168)
T ss_dssp HHHHHHHTTCSTTCEEEE-ECCSHHHHHHHHHHHHHTCEEEEEES---SSTTHHHHHHHTCSEEE
T ss_pred HHHHHHHhCcCCCCEEEE-ECCCCcchhHHHHhhhcccccccccc---chhHHHHhhccCCcEEe
Confidence 355666666788888666 56799999999999999998776544 34578889999997554
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=93.83 E-value=0.059 Score=43.78 Aligned_cols=66 Identities=21% Similarity=0.268 Sum_probs=51.9
Q ss_pred HHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 139 GYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 139 a~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
|+..+....+.|...++++++|.+.+|--|.+....|+.+|.+++..+.. ..|.+.++.+|++.+.
T Consensus 8 A~~a~~~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s---~~k~~~~~~lGad~vi 73 (167)
T d1tt7a2 8 AALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGN---REAADYLKQLGASEVI 73 (167)
T ss_dssp HHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESS---SSTHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecC---HHHHHHHHhhcccceE
Confidence 43344445667777667778888889999999999999999999887774 4567888899999875
|
| >d1vp8a_ c.49.1.2 (A:) Hypothetical protein AF0103 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Pyruvate kinase C-terminal domain-like superfamily: PK C-terminal domain-like family: MTH1675-like domain: Hypothetical protein AF0103 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=93.79 E-value=0.18 Score=41.33 Aligned_cols=75 Identities=24% Similarity=0.281 Sum_probs=59.5
Q ss_pred CCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCC---------CCCHHHHHHHH
Q 019047 129 EPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA---------STNLERRILLR 199 (347)
Q Consensus 129 ~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~---------~~~~~~~~~l~ 199 (347)
+|+..+-.......+.+|++.|. +.+|+..++|.++..++-+. .|++++++--. .++++.++.++
T Consensus 11 ~~G~~NT~~~l~~a~~rA~Elgi----~~iVvAStsG~TA~~~~e~~--~g~~lvvVth~~GF~~pg~~e~~~e~~~~L~ 84 (190)
T d1vp8a_ 11 KPGRENTEETLRLAVERAKELGI----KHLVVASSYGDTAMKALEMA--EGLEVVVVTYHTGFVREGENTMPPEVEEELR 84 (190)
T ss_dssp SCSGGGHHHHHHHHHHHHHHHTC----CEEEEECSSSHHHHHHHHHC--TTCEEEEEECCTTSSSTTCCSSCHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHcCC----CeEEEEeCCcHHHHHHHHHh--cCCeEEEEecccCCCCCCcccCCHHHHHHHH
Confidence 46666777788888899999997 57778888899998888776 38887765332 37899999999
Q ss_pred hcCCEEEEEC
Q 019047 200 AFGAEIILTD 209 (347)
Q Consensus 200 ~~GA~V~~~~ 209 (347)
..|.+|+...
T Consensus 85 ~~G~~V~t~t 94 (190)
T d1vp8a_ 85 KRGAKIVRQS 94 (190)
T ss_dssp HTTCEEEECC
T ss_pred HcCCEEEEec
Confidence 9999998643
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=93.68 E-value=0.12 Score=41.44 Aligned_cols=62 Identities=21% Similarity=0.199 Sum_probs=49.0
Q ss_pred HHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEE
Q 019047 143 ITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (347)
Q Consensus 143 ~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~ 208 (347)
++.+.++..+++|++++|. ++|.-|...+..|+.+|.+.+++.. +..+++.++.+||+.+..
T Consensus 19 ay~al~~~~~~~G~~VlI~-GaG~vG~~a~qlak~~Ga~~i~~~~---~~~~~~~a~~lGad~~i~ 80 (168)
T d1uufa2 19 TYSPLRHWQAGPGKKVGVV-GIGGLGHMGIKLAHAMGAHVVAFTT---SEAKREAAKALGADEVVN 80 (168)
T ss_dssp HHHHHHHTTCCTTCEEEEE-CCSHHHHHHHHHHHHTTCEEEEEES---SGGGHHHHHHHTCSEEEE
T ss_pred HHHHHHHhCCCCCCEEEEe-ccchHHHHHHHHhhcccccchhhcc---chhHHHHHhccCCcEEEE
Confidence 4666777788999886664 6799999999999999998876554 345678889999987654
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=93.30 E-value=0.099 Score=42.76 Aligned_cols=62 Identities=18% Similarity=0.295 Sum_probs=49.0
Q ss_pred HHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEE
Q 019047 144 TDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (347)
Q Consensus 144 ~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~ 208 (347)
....+.|....+..++|...+|.-|.+....|+.+|.+++.+.. ++.|.+.++.+||+.+..
T Consensus 21 ~~l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~---~~~k~~~~~~lGad~vi~ 82 (177)
T d1o89a2 21 MALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSG---RESTHEYLKSLGASRVLP 82 (177)
T ss_dssp HHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEES---CGGGHHHHHHHTEEEEEE
T ss_pred HHHHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCCCeEEEec---chhHHHHHHhhccccccc
Confidence 33455665544457788888999999999999999999998776 556678888999998864
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=93.18 E-value=0.38 Score=38.52 Aligned_cols=58 Identities=22% Similarity=0.331 Sum_probs=46.3
Q ss_pred HHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 147 EESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 147 ~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
.+.+.+++|++++| .++|--|...+..|+.+|.+.+++.. .++.|++.++.+|+.-+.
T Consensus 21 ~~~~~~~~g~~VlI-~G~G~iG~~~~~~ak~~g~~~v~~~~--~~~~k~~~a~~~Ga~~~i 78 (174)
T d1f8fa2 21 INALKVTPASSFVT-WGAGAVGLSALLAAKVCGASIIIAVD--IVESRLELAKQLGATHVI 78 (174)
T ss_dssp HTTTCCCTTCEEEE-ESCSHHHHHHHHHHHHHTCSEEEEEE--SCHHHHHHHHHHTCSEEE
T ss_pred HHhhCCCCCCEEEE-eCCCHHHhhhhhcccccccceeeeec--cHHHHHHHHHHcCCeEEE
Confidence 45667888887555 57799999999999999998777664 367899999999986544
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.41 E-value=0.13 Score=41.93 Aligned_cols=63 Identities=27% Similarity=0.312 Sum_probs=51.7
Q ss_pred HHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEEC
Q 019047 144 TDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (347)
Q Consensus 144 ~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~ 209 (347)
....+.|...+|++++|.+.+|--|.+.-..|+.+|.+++..... +.|.+.++.+||+.+.-.
T Consensus 21 ~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s---~~k~~~~~~lGa~~vi~~ 83 (176)
T d1xa0a2 21 HRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGK---AAEHDYLRVLGAKEVLAR 83 (176)
T ss_dssp HHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESC---TTCHHHHHHTTCSEEEEC
T ss_pred HHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCc---hHHHHHHHhcccceeeec
Confidence 444567888888888999999999999999999999999987763 456788888999987643
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=90.04 E-value=0.99 Score=36.15 Aligned_cols=66 Identities=27% Similarity=0.313 Sum_probs=51.2
Q ss_pred HHHHHHHH-HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEE
Q 019047 140 YSMITDAE-ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (347)
Q Consensus 140 ~~~~~~a~-~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~ 208 (347)
..-.+++. +.+.+++|++.+| .+.|--|...+..++.+|.+.+|+... ++.|++..+.+||+.+..
T Consensus 13 ~~T~~~a~~~~a~v~~G~~VlV-~G~G~iGl~a~~~ak~~Ga~~Vi~~d~--~~~r~~~a~~~Ga~~~i~ 79 (174)
T d1e3ia2 13 FSSGYGAAINTAKVTPGSTCAV-FGLGCVGLSAIIGCKIAGASRIIAIDI--NGEKFPKAKALGATDCLN 79 (174)
T ss_dssp HHHHHHHHHTTSCCCTTCEEEE-ECCSHHHHHHHHHHHHTTCSEEEEECS--CGGGHHHHHHTTCSEEEC
T ss_pred HHHHHHHHHHhhCCCCCCEEEE-ECCChHHHHHHHHHHHhCCceeeeecc--chHHHHHHHHhCCCcccC
Confidence 33445554 5677889987555 588999999999999999987776664 567899999999987653
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=89.98 E-value=0.94 Score=33.77 Aligned_cols=37 Identities=19% Similarity=0.227 Sum_probs=32.1
Q ss_pred CCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCC
Q 019047 153 TPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS 189 (347)
Q Consensus 153 ~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~ 189 (347)
.|+...|-.-++|+.|+-+|.+|+.+|++++++-|..
T Consensus 8 ~~~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~ 44 (111)
T d1kjqa2 8 RPAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYA 44 (111)
T ss_dssp STTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESST
T ss_pred CCCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 3455568889999999999999999999999998864
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.84 E-value=0.44 Score=38.63 Aligned_cols=61 Identities=20% Similarity=0.303 Sum_probs=44.0
Q ss_pred HcCCCCCC--CeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEEC
Q 019047 148 ESGDITPG--KTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (347)
Q Consensus 148 ~~G~~~~g--~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~ 209 (347)
+.+.+++| ++++|.+.+|.-|.+....|+.+|.+.+|.+... +..+....+.+|++.+.-.
T Consensus 22 ~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~-~e~~~~l~~~~gad~vi~~ 84 (187)
T d1vj1a2 22 EKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGT-QEKCLFLTSELGFDAAVNY 84 (187)
T ss_dssp HHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESS-HHHHHHHHHHSCCSEEEET
T ss_pred HHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccch-HHHHhhhhhcccceEEeec
Confidence 34455665 5677777789999999999999999987765542 3344455567899887754
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=89.83 E-value=0.89 Score=35.98 Aligned_cols=55 Identities=18% Similarity=0.227 Sum_probs=42.8
Q ss_pred CCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEEC
Q 019047 152 ITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (347)
Q Consensus 152 ~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~ 209 (347)
++||++. +..++|.-|...+..++.+|...++++. .++.|++.++.+|++.+...
T Consensus 30 ~~~g~~v-li~GaG~vG~~~~~~a~~~g~~~vv~~~--~~~~k~~~~~~~ga~~~i~~ 84 (172)
T d1h2ba2 30 LYPGAYV-AIVGVGGLGHIAVQLLKVMTPATVIALD--VKEEKLKLAERLGADHVVDA 84 (172)
T ss_dssp CCTTCEE-EEECCSHHHHHHHHHHHHHCCCEEEEEE--SSHHHHHHHHHTTCSEEEET
T ss_pred cCCCCEE-EEeCCChHHHHHHHHHHhhcCccccccc--chhHHHHHHhhcccceeecC
Confidence 5677764 5567899999999999999987766654 35789999999999766543
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=89.22 E-value=0.71 Score=39.00 Aligned_cols=76 Identities=25% Similarity=0.166 Sum_probs=54.3
Q ss_pred CCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCC-----CCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHHH
Q 019047 152 ITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAS-----TNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIVL 226 (347)
Q Consensus 152 ~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~-----~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~ 226 (347)
.+|+.+.||+.++|--|.++|..-...|.+.+|++..+ .....++.++..|++|..+..+.+..+.++.+.+...
T Consensus 6 ~~p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~i~ 85 (259)
T d2fr1a1 6 WKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIG 85 (259)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSC
T ss_pred cCCcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHHhhcccc
Confidence 46777888999899999999999989999766665432 2344566778899999887655544555655554443
Q ss_pred c
Q 019047 227 N 227 (347)
Q Consensus 227 ~ 227 (347)
+
T Consensus 86 ~ 86 (259)
T d2fr1a1 86 D 86 (259)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=89.07 E-value=1.1 Score=35.72 Aligned_cols=66 Identities=21% Similarity=0.274 Sum_probs=51.3
Q ss_pred HHHHHHHHH-HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 139 GYSMITDAE-ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 139 a~~~~~~a~-~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
+..-.+.+. +.+.+++|++.+|. +.|--|......|+.+|...+|.+.. ++.|++..+.+||+-+.
T Consensus 11 a~~Ta~~a~~~~a~~~~G~~VlV~-GaGgvGl~a~~~ak~~G~~~Vi~~d~--~~~kl~~a~~lGa~~~i 77 (174)
T d1p0fa2 11 GFATGYGAAVNTAKVTPGSTCAVF-GLGGVGFSAIVGCKAAGASRIIGVGT--HKDKFPKAIELGATECL 77 (174)
T ss_dssp HHHHHHHHHHTTTCCCTTCEEEEE-CCSHHHHHHHHHHHHHTCSEEEEECS--CGGGHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHHhhCCCCCCEEEEE-CCCchhHHHHHHHHHcCCceeeccCC--hHHHHHHHHHcCCcEEE
Confidence 344455554 56788999875544 78999999999999999987777664 67888999999998775
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=88.00 E-value=0.72 Score=36.43 Aligned_cols=63 Identities=22% Similarity=0.315 Sum_probs=48.2
Q ss_pred HHHHHH-HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 142 MITDAE-ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 142 ~~~~a~-~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
-.+.+. +.+.++||++++|. +.|--|......|+.+|.+.+|.+.. ++.|++..+.+||+-+.
T Consensus 15 Tay~al~~~~~~~~G~tVlI~-GaGGvG~~aiq~ak~~G~~~vi~~~~--~~~k~~~ak~lGa~~~i 78 (176)
T d2fzwa2 15 TGYGAAVNTAKLEPGSVCAVF-GLGGVGLAVIMGCKVAGASRIIGVDI--NKDKFARAKEFGATECI 78 (176)
T ss_dssp HHHHHHHTTTCCCTTCEEEEE-CCSHHHHHHHHHHHHHTCSEEEEECS--CGGGHHHHHHHTCSEEE
T ss_pred HHHHHHHHhhCCCCCCEEEEe-cchhHHHHHHHHHHHHhcCceEEEcc--cHHHHHHHHHhCCcEEE
Confidence 345554 56788999885555 56667888899999999988877754 67778899999987664
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=87.36 E-value=0.86 Score=36.52 Aligned_cols=66 Identities=24% Similarity=0.308 Sum_probs=50.3
Q ss_pred HHHHHHHH-HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEE
Q 019047 140 YSMITDAE-ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (347)
Q Consensus 140 ~~~~~~a~-~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~ 208 (347)
..-.+.|. +.+.+++|++ |+..+.|--|......|+.+|..-+|.+.. ++.|++..+.+||+.+.-
T Consensus 14 ~~T~~~Av~~~~~~~~g~t-VlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~--~~~kl~~Ak~~GA~~~in 80 (176)
T d1d1ta2 14 FSTGYGAAVKTGKVKPGST-CVVFGLGGVGLSVIMGCKSAGASRIIGIDL--NKDKFEKAMAVGATECIS 80 (176)
T ss_dssp HHHHHHHHHTTSCCCTTCE-EEEECCSHHHHHHHHHHHHTTCSEEEEECS--CGGGHHHHHHHTCSEEEC
T ss_pred HHHHHHHHHHhhCCCCCCE-EEEECCCchhHHHHHHHHHcCCceEEEecC--cHHHHHHHHhcCCcEEEC
Confidence 33445554 6677888877 555678999999999999999876666653 577899999999987663
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=87.34 E-value=0.81 Score=38.87 Aligned_cols=67 Identities=21% Similarity=0.251 Sum_probs=49.4
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHhcCCEEEEECCCCChHHHHHHH
Q 019047 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--LERRILLRAFGAEIILTDPEKGLRGALDKA 221 (347)
Q Consensus 155 g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~--~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a 221 (347)
|++.||+.+++--|.++|......|.+++|....+.. ....+.++.+|.+++.+..+.+-.+.++..
T Consensus 6 GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~ 74 (259)
T d1ja9a_ 6 GKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVAL 74 (259)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHH
Confidence 4677888888899999999999999999887665433 234667788999998876655434444443
|
| >d1t57a_ c.49.1.2 (A:) Hypothetical protein MTH1675 {Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Pyruvate kinase C-terminal domain-like superfamily: PK C-terminal domain-like family: MTH1675-like domain: Hypothetical protein MTH1675 species: Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=87.09 E-value=0.87 Score=37.02 Aligned_cols=73 Identities=19% Similarity=0.235 Sum_probs=54.8
Q ss_pred CCCCchhHHHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCC----------CCCHHHHHHH
Q 019047 129 EPCRSVKDRIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPA----------STNLERRILL 198 (347)
Q Consensus 129 ~ptGSfK~Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~----------~~~~~~~~~l 198 (347)
+|+..+-.......+.+|++.|. +.+|+..++|.++..++-+. .-++ |+|.. .++++.++.+
T Consensus 10 ~~G~~NT~~~l~~a~~ra~elgi----~~iVvAStsG~TA~~~~e~~---~~~l-vvVth~~GF~~pg~~e~~~e~~~~L 81 (186)
T d1t57a_ 10 EPGKENTERVLELVGERADQLGI----RNFVVASVSGETALRLSEMV---EGNI-VSVTHHAGFREKGQLELEDEARDAL 81 (186)
T ss_dssp SCSGGGHHHHHHHHHHHHHHHTC----CEEEEECSSSHHHHHHHTTC---CSEE-EEECCCTTSSSTTCCSSCHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHcCC----CeEEEEeCCcHHHHHHHHhc---CCCE-EEEecccCCCCCCCCccCHHHHHHH
Confidence 46666777788888899999997 57778888899987776554 3344 44443 2688999999
Q ss_pred HhcCCEEEEEC
Q 019047 199 RAFGAEIILTD 209 (347)
Q Consensus 199 ~~~GA~V~~~~ 209 (347)
+..|.+|+.-.
T Consensus 82 ~~~G~~V~t~t 92 (186)
T d1t57a_ 82 LERGVNVYAGS 92 (186)
T ss_dssp HHHTCEEECCS
T ss_pred HHcCCEEEEec
Confidence 99999998643
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=86.19 E-value=0.31 Score=34.42 Aligned_cols=47 Identities=11% Similarity=0.063 Sum_probs=36.4
Q ss_pred EEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEEC
Q 019047 158 VLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTD 209 (347)
Q Consensus 158 ~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~ 209 (347)
+|..-++|+.|+-++.+|+.+|++++++-|+...+.. ..-.+|+..+
T Consensus 3 ~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~pa~-----~~a~dvIT~e 49 (78)
T d3etja2 3 QVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPAAV-----PFQQSVITAE 49 (78)
T ss_dssp EEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCGGGS-----CGGGSEEEES
T ss_pred EEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCCccc-----ccccceEEEe
Confidence 4788899999999999999999999999997544321 1233677665
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=85.78 E-value=1.1 Score=38.12 Aligned_cols=73 Identities=19% Similarity=0.077 Sum_probs=51.5
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHhcCCEEEEECCCCChHHHHHHHHH-HHHc
Q 019047 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEE-IVLN 227 (347)
Q Consensus 155 g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~-~a~~ 227 (347)
|++.||+.+++.-|.++|...+..|.++++.-..... ....+.++..|.+++....+.+..+.++...+ +.++
T Consensus 6 gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 80 (258)
T d1ae1a_ 6 GTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHV 80 (258)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHH
Confidence 4678899999999999999999999998886654222 23456788899988776554444455555443 3344
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=85.35 E-value=2.3 Score=35.68 Aligned_cols=70 Identities=17% Similarity=0.220 Sum_probs=51.0
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHH
Q 019047 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIV 225 (347)
Q Consensus 155 g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a 225 (347)
|+..||+.+++.-|.++|......|.++++.--. ........++.+|.+++.+..|.+..+.++.+.+.+
T Consensus 5 gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~-~~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~ 74 (247)
T d2ew8a1 5 DKLAVITGGANGIGRAIAERFAVEGADIAIADLV-PAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQV 74 (247)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS-CCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC-chHHHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHH
Confidence 3577888888999999999999999998776443 345666778899999887765544445555554433
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=84.97 E-value=1.2 Score=37.91 Aligned_cols=70 Identities=23% Similarity=0.263 Sum_probs=49.8
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHhcCCEEEEECCCCChHHHHHHHHHH
Q 019047 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--LERRILLRAFGAEIILTDPEKGLRGALDKAEEI 224 (347)
Q Consensus 155 g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~--~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~ 224 (347)
|++.||+.+++.-|.++|......|.++++.-....+ ....+.++..|.+++.+..+.+..+.++...+.
T Consensus 18 gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~ 89 (272)
T d1g0oa_ 18 GKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEE 89 (272)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHH
Confidence 4577888888999999999999999999887654322 234566788899998776544434444444443
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=84.73 E-value=3.3 Score=32.26 Aligned_cols=64 Identities=25% Similarity=0.304 Sum_probs=44.3
Q ss_pred HHHHHHH-HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEE
Q 019047 141 SMITDAE-ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIIL 207 (347)
Q Consensus 141 ~~~~~a~-~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~ 207 (347)
.-.+.+. +.+.+++|++++|. +.|--|...+..++.+|-..+|.+.. .+.|++.++.+||+-+.
T Consensus 14 ~Tay~a~~~~a~~k~g~~VlI~-G~Gg~g~~~~~~~~~~g~~~Vi~~~~--~~~rl~~a~~~GAd~~i 78 (175)
T d1cdoa2 14 STGFGAAVNTAKVEPGSTCAVF-GLGAVGLAAVMGCHSAGAKRIIAVDL--NPDKFEKAKVFGATDFV 78 (175)
T ss_dssp HHHHHHHHTTTCCCTTCEEEEE-CCSHHHHHHHHHHHHTTCSEEEEECS--CGGGHHHHHHTTCCEEE
T ss_pred HHHHHHHHHhhCCCCCCEEEEE-ecCCccchHHHHHHHHhhchheeecc--hHHHHHHHHHcCCcEEE
Confidence 3345554 56778899885555 55556666666677777776666643 56788999999997665
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=84.42 E-value=1.6 Score=37.13 Aligned_cols=71 Identities=15% Similarity=0.181 Sum_probs=50.3
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHH
Q 019047 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST--NLERRILLRAFGAEIILTDPEKGLRGALDKAEEIV 225 (347)
Q Consensus 155 g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~--~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a 225 (347)
|++.||+.+++.-|.++|......|.++++.-.... .....+.++.+|.+++.+..+.+..+.++.+.+.+
T Consensus 7 gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~ 79 (261)
T d1geea_ 7 GKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSA 79 (261)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHH
Confidence 357788888889999999999999999887655432 22346677889999988766554455555554433
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=84.05 E-value=4.7 Score=34.27 Aligned_cols=48 Identities=17% Similarity=0.019 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEE
Q 019047 137 RIGYSMITDAEESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIV 184 (347)
Q Consensus 137 Rga~~~~~~a~~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I 184 (347)
+|..+.+..+.+........++|+.-+.||-|..+|......|.+++.
T Consensus 17 ~Gv~~~~~~~~~~~~~~l~g~~v~IQGfGnVG~~~a~~L~e~Gakvva 64 (255)
T d1bgva1 17 YGSVYYVEAVMKHENDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVT 64 (255)
T ss_dssp HHHHHHHHHHHHHTTCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHhCCCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence 466666666654333333335689999999999999999999998873
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=83.60 E-value=1.4 Score=37.23 Aligned_cols=71 Identities=23% Similarity=0.246 Sum_probs=48.2
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHH
Q 019047 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN--LERRILLRAFGAEIILTDPEKGLRGALDKAEEIV 225 (347)
Q Consensus 155 g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~--~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a 225 (347)
|++.||+.+++.-|.++|......|.++++.--.... ....+..+.+|.+++.+..+.+..+.++.+.+..
T Consensus 5 gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~ 77 (251)
T d1vl8a_ 5 GRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAV 77 (251)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHH
Confidence 4577888888999999999999999998776543211 1223345678999887765544455555554443
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=82.83 E-value=3.7 Score=32.07 Aligned_cols=64 Identities=19% Similarity=0.222 Sum_probs=47.0
Q ss_pred HHHHHH-HcCCCCCCCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEE
Q 019047 142 MITDAE-ESGDITPGKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILT 208 (347)
Q Consensus 142 ~~~~a~-~~G~~~~g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~ 208 (347)
-.+.+. +.+.+++|++.+| .+.|--|...+..++.+|-..+|.+.. ++.|++.++.+|++-...
T Consensus 15 Tay~al~~~~~vk~GdtVlV-~GaGG~G~~~~~~~~~~g~~~Vi~~~~--~~~k~~~a~~~Ga~~~i~ 79 (176)
T d2jhfa2 15 TGYGSAVKVAKVTQGSTCAV-FGLGGVGLSVIMGCKAAGAARIIGVDI--NKDKFAKAKEVGATECVN 79 (176)
T ss_dssp HHHHHHHTTTCCCTTCEEEE-ECCSHHHHHHHHHHHHTTCSEEEEECS--CGGGHHHHHHTTCSEEEC
T ss_pred HHHHHHHHhhCCCCCCEEEE-ECCCCcHHHHHHHHHHcCCceEEeecC--cHHHHHHHHHhCCeeEEe
Confidence 344553 6788999987555 455668888888999999877777664 567788888899875543
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=82.81 E-value=1.9 Score=36.36 Aligned_cols=71 Identities=20% Similarity=0.120 Sum_probs=48.9
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHH
Q 019047 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPAST-NLERRILLRAFGAEIILTDPEKGLRGALDKAEEIV 225 (347)
Q Consensus 155 g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~-~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a 225 (347)
|+..||+.+++.-|.++|......|.++++.-.... -....+.++.+|.+++.+..+.+-.+.++...+.+
T Consensus 2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~ 73 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAV 73 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHH
Confidence 356688888899999999999999999877643211 12234566788998887765554455555555444
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=82.08 E-value=2.6 Score=35.51 Aligned_cols=72 Identities=15% Similarity=0.177 Sum_probs=50.5
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHH--HHHHHHhcCCEEEEECCCCChHHHHHHHHHHHH
Q 019047 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLE--RRILLRAFGAEIILTDPEKGLRGALDKAEEIVL 226 (347)
Q Consensus 155 g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~--~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a~ 226 (347)
|++.||+.+++.-|.++|..-...|.++++.-....... ..+..+.+|.+++.+..+.+..+.++.+.+...
T Consensus 9 gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~ 82 (260)
T d1h5qa_ 9 NKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQID 82 (260)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHH
Confidence 357788888899999999999999999887765543332 233456789998877665554566655554443
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=81.39 E-value=2 Score=36.42 Aligned_cols=71 Identities=23% Similarity=0.162 Sum_probs=48.4
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHH
Q 019047 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEEIV 225 (347)
Q Consensus 155 g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a 225 (347)
|++.||+.+++.-|.++|......|.++++.-..... ....+.++..|.+++.+..+.+-.+.++...+.+
T Consensus 5 gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~ 76 (260)
T d1zema1 5 GKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSV 76 (260)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHH
Confidence 4577888888999999999999999987765432111 2234566788999887765544445555554443
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=81.37 E-value=1.5 Score=37.15 Aligned_cols=71 Identities=14% Similarity=0.160 Sum_probs=48.6
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHH
Q 019047 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTN-LERRILLRAFGAEIILTDPEKGLRGALDKAEEIV 225 (347)
Q Consensus 155 g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~-~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a 225 (347)
|++.||+.+++--|.++|......|.++++.-..... ....+.++..|.+++.+..+.+-.+.++...+.+
T Consensus 11 gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~ 82 (255)
T d1fmca_ 11 GKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFA 82 (255)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHH
Confidence 3577888888999999999999999998776532111 2334567788998887766554445555544433
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.48 E-value=3 Score=35.09 Aligned_cols=68 Identities=13% Similarity=0.076 Sum_probs=45.9
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhcCCEEEEECCCCChHHHHHHHHHHH
Q 019047 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNLERRILLRAFGAEIILTDPEKGLRGALDKAEEIV 225 (347)
Q Consensus 155 g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a 225 (347)
|++.||+.+++.-|.++|......|.++++.- .+..+.+.+...+.+++.+..+.+-.+.++...+.+
T Consensus 6 GK~alITGas~GIG~aia~~la~~Ga~V~i~~---r~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~ 73 (250)
T d1ydea1 6 GKVVVVTGGGRGIGAGIVRAFVNSGARVVICD---KDESGGRALEQELPGAVFILCDVTQEDDVKTLVSET 73 (250)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEE---SCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEE---CCHHHHHHHHHhcCCCeEEEccCCCHHHHHHHHHHH
Confidence 45788888899999999999999999987753 245666666655555555544443345555544433
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=80.18 E-value=3 Score=35.13 Aligned_cols=71 Identities=21% Similarity=0.268 Sum_probs=47.6
Q ss_pred CCeEEEEeCCChhHHHHHHHHHHcCCcEEEEeCCCCCH---HHHHHHHhcCCEEEEECCCCChHHHHHHHHHHH
Q 019047 155 GKTVLVEPTTGNTGLGIAFVAAVKGYKLIVTMPASTNL---ERRILLRAFGAEIILTDPEKGLRGALDKAEEIV 225 (347)
Q Consensus 155 g~~~vv~assGN~g~AlA~aa~~~Gl~~~I~vp~~~~~---~~~~~l~~~GA~V~~~~~~~~~~~a~~~a~~~a 225 (347)
|+..||+.+++.-|.++|......|.++++.-..+... .+.......|.+++.+..|.+..+.++.+.+.+
T Consensus 4 gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~ 77 (260)
T d1x1ta1 4 GKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNA 77 (260)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHH
T ss_pred cCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHH
Confidence 45778888888999999999999999877765432211 112233567899988876655455555554433
|