Citrus Sinensis ID: 019053

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------
Protein Sequence
MAPDHNHFYNQGDQALAPIKSQEMLTNQASLSNSESAFPILAIAILSIMGTAFLLLSYYVFVSKCCNNWHLIDLLRRFSVLRARQIEEPFIALSPTMWNRGLDDSVIRDIPTFQFKREGEDMSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTTRYPIDQIIAPRPSPQGSQQFSESLMGGDDDFVVIELGGEDEVLFSHRQQERDNSSEVFDQPRSQSPKTLEQKLGNSKRKKRHHVSIMGDECIDVRQKDDHFSTQPIRRSFSLDSAADRQLYITVQAIVQQNGHNGEVSTNEECSARVCKSFFPFGRVRGSRNAVLPVEFEL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHccccccccccccccccccccccccccccHHHHHHccEEEEEcccccccccccEEEccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccEEEcccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHccEEEEEcccccccccEEEEEEcccccccEEEEcccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEcEEEEc
Coil and Loop (DISEMBL)
mapdhnhfynqgdqalapiksqemltnqaslsnsesaFPILAIAILSIMGTAFLLLSYYVFVSKCCNNWHLIDLLRRFSVLRARQieepfialsptmwnrglddsvirdiptfqfkregedmsiYGCVVCLnefqeqdmlrvlpncshafhlDCIDIWLqsnancplcrtsisgttrypidqiiaprpspqgsqqfseslmggdddfVVIELGGEDEVLFSHrqqerdnssevfdqprsqspktlEQKLgnskrkkrhhvsimgdecidvrqkddhfstqpirrsfsldsaaDRQLYITVQAIVQqnghngevstneecsarvcksffpfgrvrgsrnavlpvefel
Flexible Loop (DISEMBL)
MAPDHNHFYNQGDQALAPIKSQEMLTNQASLSNSESAFPILAIAILSIMGTAFLLLSYYVFVSKCCNNWHLIDLLRRFSVLRARQIEEpfialsptmwnrglddsvIRDIPTFQFKREGEDMSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTTRYPIDQIIAPRPSPQGSQQFSESLMGGDDDFVVIELGGEDEVLFSHRqqerdnssevfdqprsqspktleqklgnskrkkrhhvsimgdecidvrqkDDHFSTQPIRRSFSLDSAADRQLYITVQAIVQQNGHNGEVSTNEECSARVCKSffpfgrvrgsrnavlpvefel
Low Complexity Region (SEG)
MAPDHNHFYNQGDQALAPIKSQEMLTNQASLSNSESAFPILAIAILSIMGTAFLLLSYYVFVSKCCNNWHLIDLLRRFSVLRARQIEEPFIALSPTMWNRGLDDSVIRDIPTFQFKREGEDMSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTTRYPIDQIIAPRPSPQGSQQFSESLMGGDDDFVVIELGGEDEVLFSHRQQERDNSSEVFDQPRSQSPKTLEQKLGNSKRKKRHHVSIMGDECIDVRQKDDHFSTQPIRRSFSLDSAADRQLYITVQAIVQQNGHNGEVSTNEECSARVCKSFFPFGRVRGSRNAVLPVEFEL
Disordered region (IsUnstruct)
************************************AFPILAIAILSIMGTAFLLLSYYVFVSKCCNNWHLIDLLRRFSVLRARQIEEPFIALSPTMWNRGLDDSVIRDIPTFQFKREGEDMSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTTRYPIDQII*********************DFVVIELGGEDEV***********************************************ECID******************LDSAADRQLYITVQAIVQQNGHNGEVSTNEECSARVCKSFFPFGRVRGSRNAV*******
Disordered Region (DISOPRED)
****************************************LAIAILSIMGTAFLLLSYYVFVSKCCNNWH*******************************LDDSVIRDIPTFQFKREGEDMSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSIS***********************************************************************************************************************************************************************LPVEFEL
Disordered Region (DISEMBL)
MAPDHNHFYNQGDQALAPIKSQEMLTNQASLSNSESAFPILAIAILSIMGTAFLLLSYYVFVSKCCNNWHLIDLLRRFSVLRARQIEEPFIALSPTMWNRGLDDSVIRDIPTFQFKREGEDMSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTTRYPIDQIIAPR**********ESLMGGDDDFVVIELGGEDEVLFSH*************************************VSIMGDECIDVRQKDDHFSTQPIRRSFSLDSAADRQLYITVQAIVQQNGHNGEVSTNEECSARVCKSFFPFGRVRGSRNAVLPVEFEL
Disordered Region (DISPRO)
**********************************ESAFPILAIAILSIMGTAFLLLSYYVFVSKCCNNWH*****************************RGLDDSVIRDIPTFQFKREGEDMSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSI********************************************************************************************************FSTQPIRRSFSLDSAADRQLYITVQAIVQQ*******************************NAVLPVEFEL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAPDHNHFYNQGDQALAPIKSQEMLTNQASLSNSESAFPILAIAILSIMGTAFLLLSYYVFVSKCCNNWHLIDLLRRFSVLRARQIEEPFIALSPTMWNRGLDDSVIRDIPTFQFKREGEDMSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTTRYPIDQIIAPRPSPQGSQQFSESLMGGDDDFVVIELGGEDEVLFSHRQQERDNSSEVFDQPRSQSPKTLEQKLGNSKRKKRHHVSIMGDECIDVRQKDDHFSTQPIRRSFSLDSAADRQLYITVQAIVQQNGHNGEVSTNEECSARVCKSFFPFGRVRGSRNAVLPVEFEL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	347	2.2.26 [Sep-21-2011]
Q9LSW9	375	RING-H2 finger protein AT	yes	no	0.780	0.722	0.470	4e-70
P93823	381	RING-H2 finger protein AT	no	no	0.760	0.692	0.5	1e-69
P0C041	310	Putative RING-H2 finger p	no	no	0.466	0.522	0.392	5e-23
Q9LF64	362	RING-H2 finger protein AT	no	no	0.708	0.679	0.275	7e-23
Q7XLY8	383	E3 ubiquitin-protein liga	no	no	0.544	0.493	0.318	8e-23
Q9SRQ8	356	RING-H2 finger protein AT	no	no	0.605	0.589	0.309	6e-21
Q8L9T5	304	RING-H2 finger protein AT	no	no	0.242	0.276	0.470	2e-18
Q8GW38	369	RING-H2 finger protein AT	no	no	0.242	0.227	0.471	4e-18
Q8LFY8	413	RING-H2 finger protein AT	no	no	0.397	0.334	0.357	1e-17
Q67YI6	411	RING-H2 finger protein AT	no	no	0.262	0.221	0.443	2e-17

>sp|Q9LSW9|ATL16_ARATH RING-H2 finger protein ATL16 OS=Arabidopsis thaliana GN=ATL16 PE=2 SV=1

 Score =  265 bits (677), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 143/304 (47%), Positives = 205/304 (67%), Gaps = 33/304 (10%)

Query: 32  SNSESAFPILAIAILSIMGTAFLLLSYYVFVSKCCNNWHLIDLLRRFSVLRARQIEE-PF 90
           S++ ++FPILA+A++ I+ TAFLL+SYYVFV KCC NWH ID+L RFS+ R R+ ++ P 
Sbjct: 28  SSTGTSFPILAVAVIGILATAFLLVSYYVFVIKCCLNWHRIDILGRFSLSRRRRNDQDPL 87

Query: 91  IALSPTMWNRGLDDSVIRDIPTFQFK-REGEDMSIYG-------------CVVCLNEFQE 136
           +  SP + +RGLD+SVIR IP F+FK R  ++  ++              C VCL+EFQ+
Sbjct: 88  MVYSPELRSRGLDESVIRAIPIFKFKKRYDQNDGVFTGEGEEEEEKRSQECSVCLSEFQD 147

Query: 137 QDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTTRYPIDQIIAPRPSPQGSQQF 196
           ++ LR++PNCSH FH+DCID+WLQ+NANCPLCRT +S  T +P D++ AP  SP+     
Sbjct: 148 EEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRVSCDTSFPPDRVSAPSTSPE----- 202

Query: 197 SESLMGGDDDFVVIELG---GEDEVLFSHRQ----QERDNSSEVFDQPR----SQSPKTL 245
           +  ++ G++++VVIELG   G D     H +    QER NS  + ++      S SPK L
Sbjct: 203 NLVMLRGENEYVVIELGSSIGSDRDSPRHGRLLTGQERSNSGYLLNENTQNSISPSPKKL 262

Query: 246 EQKLGNSKRKKRHHVSIMGDECIDVRQ-KDDHF-STQPIRRSFSLDSAADRQLYITVQAI 303
           ++     K +K H ++ MGDECID+R+ KD+ F S QPIRRS S+DS+ADRQLY+ VQ  
Sbjct: 263 DRGGLPRKFRKLHKMTSMGDECIDIRRGKDEQFGSIQPIRRSISMDSSADRQLYLAVQEA 322

Query: 304 VQQN 307
           +++N
Sbjct: 323 IRKN 326

Arabidopsis thaliana (taxid: 3702)

>sp|P93823|ATL1_ARATH RING-H2 finger protein ATL1 OS=Arabidopsis thaliana GN=ATL1 PE=2 SV=1

 Score =  263 bits (673), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 149/298 (50%), Positives = 187/298 (62%), Gaps = 34/298 (11%)

Query: 32  SNSESAFPILAIAILSIMGTAFLLLSYYVFVSKCCNNWHLIDLLRRFSVLRARQIEEPFI 91
           S+S + FPILAIA++ I+ TAFLL+SYY+FV KCC NWH ID+ RR    R    + P +
Sbjct: 35  SSSGTNFPILAIAVIGILATAFLLVSYYIFVIKCCLNWHQIDIFRR---RRRSSDQNPLM 91

Query: 92  ALSPTMWNRGLDDSVIRDIPTFQFKR-------EGEDMSIYGCVVCLNEFQEQDMLRVLP 144
             SP   NRGLD+S IR IP F+FK+       E +  +   C VCLNEFQE + LR++P
Sbjct: 92  IYSPHEVNRGLDESAIRAIPVFKFKKRDVVAGEEDQSKNSQECSVCLNEFQEDEKLRIIP 151

Query: 145 NCSHAFHLDCIDIWLQSNANCPLCRTSISGTTRYPIDQIIAPRPSPQGSQQFSES----- 199
           NC H FH+DCIDIWLQ NANCPLCRTS+S    + +D I AP  SP+ +   S +     
Sbjct: 152 NCCHVFHIDCIDIWLQGNANCPLCRTSVSCEASFTLDLISAP-SSPRENSPHSRNRNLEP 210

Query: 200 --LMGGDDDFVVIELGGED-------EVLFSHRQQERDNSSEVF--DQPRSQSPKTLEQK 248
             ++GGDDDFVVIELG  +         +    +QER  S+EV   + P+S SP  L  K
Sbjct: 211 GLVLGGDDDFVVIELGASNGNNRESVRNIDFLTEQERVTSNEVSTGNSPKSVSP--LPIK 268

Query: 249 LGN----SKRKKRHHVSIMGDECIDVRQKDDHFS-TQPIRRSFSLDSAADRQLYITVQ 301
            GN     K +K H V+ MGDECID R KD HF   QPIRRS S+DS+ DRQLY+ VQ
Sbjct: 269 FGNRGMYKKERKFHKVTSMGDECIDTRGKDGHFGEIQPIRRSISMDSSVDRQLYLAVQ 326

Arabidopsis thaliana (taxid: 3702)

>sp|P0C041|ATL53_ARATH Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana GN=ATL53 PE=3 SV=2

 Score =  108 bits (271), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/181 (39%), Positives = 92/181 (50%), Gaps = 19/181 (10%)

Query: 18  PIKSQEMLTNQASLSNSESAFPILAIAILSIMGTAFLLLSYYVFVSKCCNNWHLID---- 73
           P  S E   N    SN       L IAI  I  TAFLL +YY  VSK C N    +    
Sbjct: 40  PPISYEQFLNDGVASNPN--LSPLVIAIFGIFATAFLLAAYYTLVSKYCANDTTNEAASE 97

Query: 74  ------LLRRFSVLRARQIEEPFIALSPTMWNRGLDDSVIRDIPTFQFKREGEDMSIYG- 126
                 +L   S  R  Q ++PF   S T    GLDD++I+ I  F+ K+      I G 
Sbjct: 98  SGRSDIILDVNSPERGDQ-DDPFALESSTA---GLDDTLIKKIGFFKLKKHQNGFKINGT 153

Query: 127 -CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTS-ISGTTRYPIDQII 184
            C +CL EF E + LR+LP C+H FH+ CID WL+S++NCPLCR   I  TT+ P   ++
Sbjct: 154 DCSICLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPLCRAKIIVPTTQQPEHHVV 213

Query: 185 A 185
            
Sbjct: 214 V 214

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LF64|ATL52_ARATH RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2 SV=1

 Score =  108 bits (269), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 133/280 (47%), Gaps = 34/280 (12%)

Query: 43  IAILSIMGTAFLLLSYYVFVSKCCNNWHLIDLLRRFSVLRARQIEEPFIALSPTMWNRG- 101
           IA++ I+ +A +L+SYY  +SK C+  H          L      E F + +  +   G 
Sbjct: 59  IALIGILTSALILVSYYTLISKYCHRHHQTS---SSETLNLNHNGEGFFSSTQRISTNGD 115

Query: 102 -LDDSVIRDIPTFQFKREGEDMSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQ 160
            L++S+I+ I  +++K     +    C VCL+EF+E + LR+LP C+HAFHL CID WL+
Sbjct: 116 GLNESMIKSITVYKYKSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLK 175

Query: 161 SNANCPLCRTSISGTTRYPIDQIIAPRPSPQGSQQFSESLMGGDDDFVVIELGGEDEV-- 218
           S++NCPLCR  ++G              +P  S   + S++  +      + G   E+  
Sbjct: 176 SHSNCPLCRAFVTGVN------------NPTASVGQNVSVVVANQSNSAHQTGSVSEINL 223

Query: 219 -LFSHRQQERDNSSEVFDQPRSQSPKTLEQKLGNSKRKKRHHVSIMGDECIDVRQKDDHF 277
            L  +  Q  D  S V  +         + ++G+     R  + +      + R++    
Sbjct: 224 NLAGYESQTGDFDSVVVIE---------DLEIGSRNSDARSELQLP-----EERRETKDE 269

Query: 278 STQPIRRSFSLDSAADRQLYITVQAIVQQNGHNGEVSTNE 317
            + PIRRS SL+S     +   ++ I  + G +G V T++
Sbjct: 270 DSLPIRRSVSLNSGVVVSIADVLREIEDEEGESGGVGTSQ 309

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XLY8|ATL41_ORYSJ E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica GN=Os04g0590900 PE=2 SV=2

 Score =  108 bits (269), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 108/232 (46%), Gaps = 43/232 (18%)

Query: 29  ASLSNSESAFPI---LAIAILSIMGTAFLLLSYYVFVSKCCNNWHLIDLLRRFSVLRARQ 85
           A  S  +S+ P+   L IAI+ ++ +AFLL+SYY F+SK C            S LR R 
Sbjct: 43  AGTSADDSSGPVFSPLVIAIIGVLASAFLLVSYYTFISKYCGT---------VSSLRGRV 93

Query: 86  IEEPFI------------------ALSPTMWN----RGLDDSVIRDIPTFQFKREGEDMS 123
                                   + S   WN     GLD+++I  I   +++R    + 
Sbjct: 94  FGSSSGGAAYGGGAGSGGRHGHGQSRSHESWNVSPPSGLDETLINKITVCKYRRGDGFVH 153

Query: 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTTRYPIDQI 183
              C VCL EF + + LR+LP CSHAFH  CID WL+S++NCPLCR +I+  T      +
Sbjct: 154 TTDCSVCLGEFSDGESLRLLPRCSHAFHQQCIDTWLKSHSNCPLCRANITFVT------V 207

Query: 184 IAPRPSPQGSQQFSESLMGGDDDFVVIELGGEDEVLFSHRQQERDNSSEVFD 235
               P P+G    +    GGD+   V+ +    E L   +Q+    +S   D
Sbjct: 208 GLASPEPEGC---APGETGGDNTHEVVVVMDGLENLCEEQQEAVSRASTADD 256

Possesses E3 ubiquitin-protein ligase in vitro.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9SRQ8|ATL51_ARATH RING-H2 finger protein ATL51 OS=Arabidopsis thaliana GN=ATL51 PE=2 SV=2

 Score =  102 bits (253), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 114/239 (47%), Gaps = 29/239 (12%)

Query: 41  LAIAILSIMGTAFLLLSYYVFVSKCC------NNWHLIDLLRRFSVLRARQIEEPFIALS 94
           L IA++ I+ +AF+L+SYY  +SK C      ++      + R S     Q         
Sbjct: 59  LLIALIGILASAFILVSYYTLISKYCHRRRHNSSSTSAAAINRISSDYTWQGTNNNNNNG 118

Query: 95  PTMWNRG--------LDDSVIRDIPTFQFKREGEDMSIYGCVVCLNEFQEQDMLRVLPNC 146
            T  N+         LD+S+I+ I  +++++    +    C VCL+EFQE + LR+LP C
Sbjct: 119 ATNPNQTIGGGGGDGLDESLIKSITVYKYRKMDGFVESSDCSVCLSEFQENESLRLLPKC 178

Query: 147 SHAFHLDCIDIWLQSNANCPLCRTSISGTTRYPIDQIIAPRPSPQGSQQF---SESLMGG 203
           +HAFH+ CID WL+S++NCPLCR  I  ++   I  +         +QQ    + S+  G
Sbjct: 179 NHAFHVPCIDTWLKSHSNCPLCRAFIVTSSAVEIVDLT--------NQQIVTENNSISTG 230

Query: 204 DDDFVVIELGGEDEVLFSHRQQERDNSSEVFDQPRSQSPKTLEQKLGNSKRKKRHHVSI 262
           DD  VV+ L  E+    S  + E  N       P  Q  +  E++   S       VSI
Sbjct: 231 DDSVVVVNLDLEN----SRSRNETVNEGSTPKPPEMQDSRDGEERRSASLNSGGGVVSI 285

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L9T5|ATL2_ARATH RING-H2 finger protein ATL2 OS=Arabidopsis thaliana GN=ATL2 PE=2 SV=2

 Score = 93.6 bits (231), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 40/85 (47%), Positives = 56/85 (65%), Gaps = 1/85 (1%)

Query: 88  EPFIALSPTMWNRGLDDSVIRDIPTFQFKREGEDMSIYGCVVCLNEFQEQDMLRVLPNCS 147
           +P  A +  + +RGLD +VI+ +P F F  E     I  C VCL+EF+E +  RVLPNC 
Sbjct: 81  DPSTAATSVVASRGLDPNVIKSLPVFTFSDETHKDPIE-CAVCLSEFEESETGRVLPNCQ 139

Query: 148 HAFHLDCIDIWLQSNANCPLCRTSI 172
           H FH+DCID+W  S++ CPLCR+ +
Sbjct: 140 HTFHVDCIDMWFHSHSTCPLCRSLV 164

May be involved in the early steps of the plant defense signaling pathway.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GW38|ATL47_ARATH RING-H2 finger protein ATL47 OS=Arabidopsis thaliana GN=ATL47 PE=2 SV=1

 Score = 92.4 bits (228), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 42/89 (47%), Positives = 57/89 (64%), Gaps = 5/89 (5%)

Query: 84  RQIEEPFIALSPTMWNRGLDDSVIRDIPTFQFKREGEDMSIYGCVVCLNEFQEQDMLRVL 143
           RQ+++ F      + + GLD ++I  +P F +K        + C VCL EF E D LR+L
Sbjct: 106 RQLQQLF-----HLHDSGLDQALIDALPVFLYKEIKGTKEPFDCAVCLCEFSEDDKLRLL 160

Query: 144 PNCSHAFHLDCIDIWLQSNANCPLCRTSI 172
           PNCSHAFH+DCID WL SN+ CPLCR ++
Sbjct: 161 PNCSHAFHIDCIDTWLLSNSTCPLCRGTL 189

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LFY8|ATL54_ARATH RING-H2 finger protein ATL54 OS=Arabidopsis thaliana GN=ATL54 PE=2 SV=2

 Score = 90.9 bits (224), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 80/151 (52%), Gaps = 13/151 (8%)

Query: 32  SNSESAFPILAI--AILSIMGTAFLLLSYYVF--VSKCCNNWHLIDLLRRFSVLRAR--- 84
           S+S  A  I+ I  A+L+I+ T F L++ +    V++     +  D     +V+      
Sbjct: 77  SSSLDAISIITITGAVLAILLTGFFLVAKFFSDSVNRVNQGTYQSDNEDNDTVMEEEFQD 136

Query: 85  --QIEEPFIALSPTMWNRGLDDSVIRDIPTFQFKREGEDMSIYGCVVCLNEFQEQDMLRV 142
             Q++ P   +  T    GL  S+I  I    +KR    +    C VCLNEF+E + LR+
Sbjct: 137 REQVDHPIWLIRTT----GLQQSIINSITICNYKRGDGLIERTDCPVCLNEFEEDESLRL 192

Query: 143 LPNCSHAFHLDCIDIWLQSNANCPLCRTSIS 173
           LP C+HAFH+ CID WL S+ NCPLCR  I+
Sbjct: 193 LPKCNHAFHISCIDTWLSSHTNCPLCRAGIA 223

Arabidopsis thaliana (taxid: 3702)

>sp|Q67YI6|ATL65_ARATH RING-H2 finger protein ATL65 OS=Arabidopsis thaliana GN=ATL65 PE=2 SV=2

 Score = 90.5 bits (223), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/106 (44%), Positives = 59/106 (55%), Gaps = 15/106 (14%)

Query: 101 GLDDSVIRDIPTFQFKREG----------EDMSIYGCVVCLNEFQEQDMLRVLPNCSHAF 150
           GLDDSVI+ +P F +                 +   C VCL EF+E D +R LP C HAF
Sbjct: 120 GLDDSVIKTLPLFLYSAAACTGKPAVGKTSAANCRDCAVCLLEFEEGDYVRTLPLCFHAF 179

Query: 151 HLDCIDIWLQSNANCPLCRTSISG-----TTRYPIDQIIAPRPSPQ 191
           HL+CID WL+S+ NCPLCRT+I G     T   P   ++APR  P 
Sbjct: 180 HLECIDEWLRSHPNCPLCRTAILGSAGVLTPMSPFVPLMAPRIRPS 225

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	347
224062153	344	predicted protein [Populus trichocarpa]	0.982	0.991	0.665	1e-130
255583204	345	ring finger protein, putative [Ricinus c	0.985	0.991	0.673	1e-129
225437852	351	PREDICTED: RING-H2 finger protein ATL1-l	0.982	0.971	0.655	1e-123
449496944	351	PREDICTED: RING-H2 finger protein ATL16-	0.953	0.943	0.612	1e-108
449468666	351	PREDICTED: RING-H2 finger protein ATL16-	0.953	0.943	0.609	1e-107
147775862	419	hypothetical protein VITISV_043412 [Viti	0.962	0.797	0.559	3e-96
359477789	359	PREDICTED: RING-H2 finger protein ATL16-	0.962	0.930	0.559	5e-96
224107873	340	predicted protein [Populus trichocarpa]	0.899	0.917	0.572	1e-94
255576814	376	ring finger protein, putative [Ricinus c	0.965	0.890	0.520	3e-88
356503604	335	PREDICTED: RING-H2 finger protein ATL1-l	0.838	0.868	0.535	8e-85

>gi|224062153|ref|XP_002300781.1| predicted protein [Populus trichocarpa] gi|222842507|gb|EEE80054.1| predicted protein [Populus trichocarpa]

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 233/350 (66%), Positives = 277/350 (79%), Gaps = 9/350 (2%)

Query: 1   MAPDHNHFYNQGDQALAPIKSQEMLTNQASLSNSESAFPILAIAILSIMGTAFLLLSYYV 60
           MAP H  +Y      +   ++Q+ L  Q     S+ AFP+LAIA+LSIMGTAFLL+ YYV
Sbjct: 1   MAPAHRQYY------IHAFRNQQNLIYQQPSPTSDHAFPLLAIAVLSIMGTAFLLVGYYV 54

Query: 61  FVSKCCNNWHLIDLLRRFSVLRARQIEEPFIALSPTMWNRGLDDSVIRDIPTFQFKRE-G 119
           FV+KCC+NW+  +LLR F+V RAR+ E+ FIALSPTMWNRGLD+SVIR+IPTFQ++RE G
Sbjct: 55  FVNKCCSNWNQFNLLRWFTVWRARRNEDSFIALSPTMWNRGLDESVIREIPTFQYRREEG 114

Query: 120 EDMSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT-TRY 178
            + S  GCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIW QSNANCPLCRTSISG+ T+Y
Sbjct: 115 RERSSCGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWFQSNANCPLCRTSISGSGTKY 174

Query: 179 PIDQIIAPRPSPQGSQQFSESLMGGDDDFVVIELGGEDE-VLFSHRQQERDNSSEVFDQP 237
           P+D+IIAP  SPQGSQ +++SLMG D+D+VVIELGGED+  L   RQ ER+ S EV  + 
Sbjct: 175 PVDRIIAPSSSPQGSQPYTDSLMGSDEDYVVIELGGEDDGALLPPRQHERNTSREVQMRL 234

Query: 238 RSQSPKTLEQKLGNSKRKKRHHVSIMGDECIDVRQKDDHFSTQPIRRSFSLDSAADRQLY 297
           RS+SP  +EQKLG  K +K+HHVSIMGDECIDVR KDD FS QP+RRSFSLDSA DRQLY
Sbjct: 235 RSRSPMKMEQKLGKLKTRKQHHVSIMGDECIDVRGKDDQFSIQPLRRSFSLDSAVDRQLY 294

Query: 298 ITVQAIVQQNGHNGEVSTNEECSARVCKSFFPFGRVRGSRNAVLPVEFEL 347
            +VQAI+ QN H+ E+S  EE S RV +S FPF  VRGSR AV PVEFE+
Sbjct: 295 SSVQAIIHQNIHHREISNTEESSNRVLRSVFPFVHVRGSRKAVRPVEFEI 344

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583204|ref|XP_002532367.1| ring finger protein, putative [Ricinus communis] gi|223527923|gb|EEF30010.1| ring finger protein, putative [Ricinus communis]

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 233/346 (67%), Positives = 268/346 (77%), Gaps = 4/346 (1%)

Query: 1   MAPDHNHFYNQGDQALAPIKSQEM-LTNQASLSNSESAFPILAIAILSIMGTAFLLLSYY 59
           MA  H  +YN    AL P K+Q+  + NQ+    S+ AFPILAIA+LSIM TA LL  YY
Sbjct: 1   MAAKHTKYYNLELHAL-PFKTQQNPIYNQSPSPTSDHAFPILAIALLSIMATAILLFGYY 59

Query: 60  VFVSKCCNNWHLIDLLRRFSVLRARQIEEPFIALSPTMWNRGLDDSVIRDIPTFQFKR-E 118
           VFV+KCC NW  ++LLR  S    R+ E+ FIALSPTMWNRGLD+SVIR IP FQ++R E
Sbjct: 60  VFVNKCCFNWQQVNLLRWVSTWLVRRNEDSFIALSPTMWNRGLDESVIRGIPAFQYRRGE 119

Query: 119 GEDMSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTTRY 178
            +  SIYGCVVCLNEFQE+DMLRVLPNC+H+FHLDCIDIWLQSNANCPLCRT ISG TRY
Sbjct: 120 AQQRSIYGCVVCLNEFQEEDMLRVLPNCNHSFHLDCIDIWLQSNANCPLCRTGISGITRY 179

Query: 179 PIDQIIAPRPSPQGSQQFSESLMGGDDDFVVIELGGEDE-VLFSHRQQERDNSSEVFDQP 237
           PIDQIIAP  SPQGSQ +++SLMGGD+DFVVIELGGE+E +L  HRQQERD S E   Q 
Sbjct: 180 PIDQIIAPSSSPQGSQPYTDSLMGGDEDFVVIELGGEEEGILLPHRQQERDASRETQMQL 239

Query: 238 RSQSPKTLEQKLGNSKRKKRHHVSIMGDECIDVRQKDDHFSTQPIRRSFSLDSAADRQLY 297
           RSQSP  +EQK G  K +KRHH+SIMGDECIDVR+KDD FS QPIRRSFSLDSA DRQLY
Sbjct: 240 RSQSPAKMEQKPGKLKPRKRHHLSIMGDECIDVREKDDQFSIQPIRRSFSLDSAVDRQLY 299

Query: 298 ITVQAIVQQNGHNGEVSTNEECSARVCKSFFPFGRVRGSRNAVLPV 343
           ++VQ I+QQN H   + T+EE S RV  SFF FG   GSR A LP+
Sbjct: 300 LSVQNIIQQNTHQRGIYTSEESSNRVQTSFFHFGHSVGSRKAFLPI 345

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437852|ref|XP_002263905.1| PREDICTED: RING-H2 finger protein ATL1-like [Vitis vinifera]

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 226/345 (65%), Positives = 267/345 (77%), Gaps = 4/345 (1%)

Query: 5   HNHFYNQGDQALAPIKSQEMLTNQASLSNSESAFPILAIAILSIMGTAFLLLSYYVFVSK 64
           H HF N G +AL  IK+ E    Q S   S++AFPILAIA+LSIM TAFLL+SYY+FV K
Sbjct: 5   HMHFSNHGSEALVYIKTHENPIYQPSSPASDTAFPILAIAVLSIMATAFLLVSYYIFVIK 64

Query: 65  CCNNWHLIDLLRRFSVLRARQIEEPFIALSPTMWNRGLDDSVIRDIPTFQFKR-EGEDMS 123
           CC +WH I+LLRRFS  ++RQ E+P +  SPT  NRGLD+S+I  IPTF F+R + E+ S
Sbjct: 65  CCLSWHHIELLRRFSTSQSRQQEDPLMDYSPTFLNRGLDESLIHQIPTFLFRRGQSEEGS 124

Query: 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTTRYPIDQI 183
            +GCVVCLNEFQE DM+RVLPNCSHAFHLDCIDIWLQSNANCPLCR+SISGTTRY  D I
Sbjct: 125 FHGCVVCLNEFQEHDMIRVLPNCSHAFHLDCIDIWLQSNANCPLCRSSISGTTRYRNDPI 184

Query: 184 IAPRPSPQGSQQFSESLMGGDDDFVVIELGGEDE--VLFSHRQQERDNSSEVFDQPRSQS 241
           IAP  SPQ  + FSE+LMGGDDDFVVIELGG D+  V+   RQQER +S E+  Q R  S
Sbjct: 185 IAPSSSPQDPRPFSEALMGGDDDFVVIELGGGDDRGVILPPRQQERADSRELLVQSRGPS 244

Query: 242 PKTLEQKLGNSKRKKRHHVSIMGDECIDVRQKDDHFSTQPIRRSFSLDSAADRQLYITVQ 301
           P  L+QKL N K +K H+VS MGDECIDVR+KDD F  QPIRRSFS+DSAAD QLY+TVQ
Sbjct: 245 PTKLQQKLENKKSRKFHYVSSMGDECIDVREKDDQFLIQPIRRSFSMDSAADPQLYMTVQ 304

Query: 302 AIVQ-QNGHNGEVSTNEECSARVCKSFFPFGRVRGSRNAVLPVEF 345
            I++ +N    EVST++EC +RV +SFF FG  RGSRNAVLP+EF
Sbjct: 305 EIIRNKNRPLSEVSTSQECDSRVRRSFFSFGHGRGSRNAVLPIEF 349

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449496944|ref|XP_004160270.1| PREDICTED: RING-H2 finger protein ATL16-like [Cucumis sativus]

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/341 (61%), Positives = 254/341 (74%), Gaps = 10/341 (2%)

Query: 14  QALAPIKSQEMLTN-QASLSN-SESAFPILAIAILSIMGTAFLLLSYYVFVSKCCNNWHL 71
           QA  PIK Q++ T+ ++S S  S+SA P+LA+ ILS+MGTAFLLLSYY+F++KCC N H 
Sbjct: 14  QAFLPIKDQQIPTSYRSSFSTVSDSASPVLAVVILSVMGTAFLLLSYYIFITKCCYNCHQ 73

Query: 72  IDLLRRFS-VLRARQIEEPFIALSPT-MWNRGLDDSVIRDIPTFQFKREGEDMSIYGCVV 129
             LLRRFS  L  +Q E+PFIALSPT MWNRGL++S+IR IP F+F+R+GE   IYGCVV
Sbjct: 74  FSLLRRFSSFLTPQQREDPFIALSPTTMWNRGLEESMIRQIPAFRFERDGEHSGIYGCVV 133

Query: 130 CLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTTRYPIDQIIAPRPS 189
           CL+EFQE +MLRVLP CSH FHLDCIDIWLQSN+NCPLCRTSISG T+ PIDQ +AP  S
Sbjct: 134 CLSEFQENEMLRVLPKCSHTFHLDCIDIWLQSNSNCPLCRTSISGITKPPIDQTVAPSSS 193

Query: 190 PQGSQQFSESLMGGDDDFVVIELGGEDEVLFSHRQQERDNSSEVFDQPRSQSPKTLEQKL 249
           PQ SQ  S  LMG D+DFVVIELG EDEV+FS  QQE + S EV  Q   Q+ K  E K+
Sbjct: 194 PQNSQLLSNGLMGSDEDFVVIELGSEDEVVFSEGQQEGNASREVLVQ---QTSKKTENKI 250

Query: 250 GNSKRKKRHHVSIMGDECIDVRQKDDHFSTQPIRRSFSLDSAADRQLYITVQAIVQQN-- 307
              K +K HHVSIMGDE IDVR+KDD F TQPIRRSFS+DSAAD+QLY+TV+ I+ Q   
Sbjct: 251 RKPKTRKCHHVSIMGDEGIDVREKDDQFFTQPIRRSFSMDSAADQQLYLTVEMIIHQGRQ 310

Query: 308 -GHNGEVSTNEECSARVCKSFFPFGRVRGSRNAVLPVEFEL 347
              +   S+  E  +R  +SF P    RG +NA+LP+E +L
Sbjct: 311 ITRSSSSSSGAESDSRNRRSFLPSRSGRGCKNAILPLESDL 351

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468666|ref|XP_004152042.1| PREDICTED: RING-H2 finger protein ATL16-like [Cucumis sativus]

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/341 (60%), Positives = 253/341 (74%), Gaps = 10/341 (2%)

Query: 14  QALAPIKSQEMLTN-QASLSN-SESAFPILAIAILSIMGTAFLLLSYYVFVSKCCNNWHL 71
           QA  PIK Q++ T+ ++S S  S+SA P+LA+ ILS+MGTAFLLLSYY+F++KCC N H 
Sbjct: 14  QAFLPIKDQQIPTSYRSSFSTVSDSASPVLAVVILSVMGTAFLLLSYYIFITKCCYNCHQ 73

Query: 72  IDLLRRFS-VLRARQIEEPFIALSPT-MWNRGLDDSVIRDIPTFQFKREGEDMSIYGCVV 129
             LLRRFS  L  +Q E+PFIALSPT MWN GL++S+IR IP F+F+R+GE   IYGCVV
Sbjct: 74  FSLLRRFSSFLTPQQREDPFIALSPTTMWNCGLEESMIRQIPAFRFERDGEHSGIYGCVV 133

Query: 130 CLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTTRYPIDQIIAPRPS 189
           CL+EFQE +MLRVLP CSH FHLDCIDIWLQSN+NCPLCRTSISG T+ PIDQ +AP  S
Sbjct: 134 CLSEFQENEMLRVLPKCSHTFHLDCIDIWLQSNSNCPLCRTSISGITKPPIDQTVAPSSS 193

Query: 190 PQGSQQFSESLMGGDDDFVVIELGGEDEVLFSHRQQERDNSSEVFDQPRSQSPKTLEQKL 249
           PQ SQ  S  LMG D+DFVVIELG EDEV+FS  QQE + S EV  Q   Q+ K  E K+
Sbjct: 194 PQNSQLLSNGLMGSDEDFVVIELGSEDEVVFSEGQQEGNASREVLVQ---QTSKKTENKI 250

Query: 250 GNSKRKKRHHVSIMGDECIDVRQKDDHFSTQPIRRSFSLDSAADRQLYITVQAIVQQN-- 307
              K +K HHVSIMGDE IDVR+KDD F TQPIRRSFS+DSAAD+QLY+TV+ I+ Q   
Sbjct: 251 RKPKTRKCHHVSIMGDEGIDVREKDDQFFTQPIRRSFSMDSAADQQLYLTVEMIIHQGRQ 310

Query: 308 -GHNGEVSTNEECSARVCKSFFPFGRVRGSRNAVLPVEFEL 347
              +   S+  E  +R  +SF P    RG +NA+LP+E +L
Sbjct: 311 ITRSSSSSSGAESDSRNRRSFLPSRSGRGCKNAILPLESDL 351

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147775862|emb|CAN69298.1| hypothetical protein VITISV_043412 [Vitis vinifera]

 Score =  357 bits (917), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 192/343 (55%), Positives = 244/343 (71%), Gaps = 9/343 (2%)

Query: 11  QGDQALAPIKSQEMLTNQASLSNSESAFPILAIAILSIMGTAFLLLSYYVFVSKCCNNWH 70
            G QA +PIKSQ      +   +S+++FPI+AIA++ I+ TAFLL+SYY+FV KCC NWH
Sbjct: 78  HGSQAFSPIKSQASSVLPSPSHSSDTSFPIIAIAVIGILATAFLLVSYYIFVIKCCLNWH 137

Query: 71  LIDLLRRFSVLRARQIEEPFIALSPTMWNRGLDDSVIRDIPTFQFK----REGEDMSIYG 126
            IDLLRRFS  R+R  E+P +  SP + +RGLD+SVIR IP FQF+    RE  + S   
Sbjct: 138 RIDLLRRFSFSRSRHREDPLMVYSPAIESRGLDESVIRSIPIFQFRKGGGREFGERSHCE 197

Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTTRYPIDQIIAP 186
           C VCLNEFQE++ LR++PNCSH FH+DCID+WLQSNANCPLCRTSIS T R+P+ QIIAP
Sbjct: 198 CAVCLNEFQEEEKLRIIPNCSHIFHIDCIDVWLQSNANCPLCRTSISTTPRFPVHQIIAP 257

Query: 187 RPSPQGSQQFSESLMGGDDDFVVIELGGE---DEVLFSHRQQERDNSSEVFDQPRSQSPK 243
             SPQ    ++ + +GGD+DFVVIELG +   D  L   R  ER NS E+     S SP+
Sbjct: 258 SSSPQDPSPYANNYIGGDEDFVVIELGNDSSADSSLL--RPPERLNSRELSAPSISPSPR 315

Query: 244 TLEQKLGNSKRKKRHHVSIMGDECIDVRQKDDHFSTQPIRRSFSLDSAADRQLYITVQAI 303
            LEQ++   K +K HHV+ MGDECID R KDD FS QPIRRSFS+DS+ DRQLY+ +Q I
Sbjct: 316 KLEQRIVPKKARKFHHVASMGDECIDTRGKDDQFSIQPIRRSFSMDSSNDRQLYLAIQEI 375

Query: 304 VQQNGHNGEVSTNEECSARVCKSFFPFGRVRGSRNAVLPVEFE 346
           +QQN    + S +E CS+R  +SFF FG  RGSR+AVLP+  +
Sbjct: 376 LQQNRPVSDFSPSEGCSSRFRRSFFSFGHGRGSRSAVLPIPMD 418

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477789|ref|XP_002281024.2| PREDICTED: RING-H2 finger protein ATL16-like [Vitis vinifera]

 Score =  357 bits (916), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 192/343 (55%), Positives = 244/343 (71%), Gaps = 9/343 (2%)

Query: 11  QGDQALAPIKSQEMLTNQASLSNSESAFPILAIAILSIMGTAFLLLSYYVFVSKCCNNWH 70
            G QA +PIKSQ      +   +S+++FPI+AIA++ I+ TAFLL+SYY+FV KCC NWH
Sbjct: 18  HGSQAFSPIKSQASSVLPSPSHSSDTSFPIIAIAVIGILATAFLLVSYYIFVIKCCLNWH 77

Query: 71  LIDLLRRFSVLRARQIEEPFIALSPTMWNRGLDDSVIRDIPTFQFK----REGEDMSIYG 126
            IDLLRRFS  R+R  E+P +  SP + +RGLD+SVIR IP FQF+    RE  + S   
Sbjct: 78  RIDLLRRFSFSRSRHPEDPLMVYSPAIESRGLDESVIRSIPIFQFRKGGGREFGERSHCE 137

Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTTRYPIDQIIAP 186
           C VCLNEFQE++ LR++PNCSH FH+DCID+WLQSNANCPLCRTSIS T R+P+ QIIAP
Sbjct: 138 CAVCLNEFQEEEKLRIIPNCSHIFHIDCIDVWLQSNANCPLCRTSISTTPRFPVHQIIAP 197

Query: 187 RPSPQGSQQFSESLMGGDDDFVVIELGGE---DEVLFSHRQQERDNSSEVFDQPRSQSPK 243
             SPQ    ++ + +GGD+DFVVIELG +   D  L   R  ER NS E+     S SP+
Sbjct: 198 SSSPQDPSPYANNYIGGDEDFVVIELGNDSSADSSLL--RPPERLNSRELSAPSISPSPR 255

Query: 244 TLEQKLGNSKRKKRHHVSIMGDECIDVRQKDDHFSTQPIRRSFSLDSAADRQLYITVQAI 303
            LEQ++   K +K HHV+ MGDECID R KDD FS QPIRRSFS+DS+ DRQLY+ +Q I
Sbjct: 256 KLEQRIVPKKARKFHHVASMGDECIDTRGKDDQFSIQPIRRSFSMDSSNDRQLYLAIQEI 315

Query: 304 VQQNGHNGEVSTNEECSARVCKSFFPFGRVRGSRNAVLPVEFE 346
           +QQN    + S +E CS+R  +SFF FG  RGSR+AVLP+  +
Sbjct: 316 LQQNRPVSDFSPSEGCSSRFRRSFFSFGHGRGSRSAVLPIPMD 358

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107873|ref|XP_002314635.1| predicted protein [Populus trichocarpa] gi|222863675|gb|EEF00806.1| predicted protein [Populus trichocarpa]

 Score =  352 bits (904), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 186/325 (57%), Positives = 239/325 (73%), Gaps = 13/325 (4%)

Query: 33  NSESAFPILAIAILSIMGTAFLLLSYYVFVSKCCNNWHLIDLLRRFSVLRARQIEEPFIA 92
           +S+++FPI+AIAI+ I+ TA LL+SYY+FV KCC NWH IDLLRRFS+ R R  E+P +A
Sbjct: 17  SSDTSFPIIAIAIIGILATALLLVSYYIFVIKCCLNWHRIDLLRRFSLSRNRNHEDPLMA 76

Query: 93  LSPT-MWNRGLDDSVIRDIPTFQFKREGEDMSIYG------CVVCLNEFQEQDMLRVLPN 145
            SP+ + +RGLD+SVIR IP F+FK+EG ++   G      C VCLNEFQE + LR +PN
Sbjct: 77  YSPSAIESRGLDESVIRSIPVFKFKKEGNNVRNVGERSFCECAVCLNEFQEAEKLRRIPN 136

Query: 146 CSHAFHLDCIDIWLQSNANCPLCRTSISGTTRYPIDQIIAPRPSPQGSQQFSESLMGGDD 205
           CSH FH+DCID+WLQSNANCPLCRTSIS TTR+PID IIAP  +P  +  +SES+MGGD+
Sbjct: 137 CSHVFHIDCIDVWLQSNANCPLCRTSISSTTRFPIDHIIAPSSTPHDANPYSESVMGGDE 196

Query: 206 DFVVIELGGE---DEVLFSHRQQERDNSSEVFDQPRSQSPKTLEQKLGNSKRKKRHHVSI 262
           D+VVIEL      D+ L +   QER NS E+  +  S SP+ +EQ +G+ K +  + V+ 
Sbjct: 197 DYVVIELSNHNSTDQTLLA--AQERLNSGELSARSISPSPRKIEQGVGHKKARNLNKVTS 254

Query: 263 MGDECIDVRQKDDHFS-TQPIRRSFSLDSAADRQLYITVQAIVQQNGHNGEVSTNEECSA 321
           MGDECID R KDD F   QPIRRSFS+DS+ADRQLY+++Q IVQQ+    EVS+ E CS 
Sbjct: 255 MGDECIDTRGKDDQFGLIQPIRRSFSMDSSADRQLYLSIQEIVQQSRQVTEVSSVEGCSG 314

Query: 322 RVCKSFFPFGRVRGSRNAVLPVEFE 346
           R  ++FF FG  RGSR++VLPV  E
Sbjct: 315 RARRAFFSFGHGRGSRSSVLPVYLE 339

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576814|ref|XP_002529293.1| ring finger protein, putative [Ricinus communis] gi|223531217|gb|EEF33062.1| ring finger protein, putative [Ricinus communis]

 Score =  331 bits (848), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 193/371 (52%), Positives = 243/371 (65%), Gaps = 36/371 (9%)

Query: 10  NQGDQALAPI---KSQEMLTNQASLSNSESAFPILAIAILSIMGTAFLLLSYYVFVSKCC 66
           N G Q+L PI    S     N     +S+++FPI+AIAI+ I+ TAFLL+SYY+FV KCC
Sbjct: 7   NYGSQSLPPITNPSSANSFFNNPHSHSSDTSFPIIAIAIIGILATAFLLVSYYIFVIKCC 66

Query: 67  NNWHLIDLLRRFSVLRARQIEEPFIALSPTMWNRGLDDSVIRDIPTFQFKREGEDMSIYG 126
            NWH ID+LRRFS+ R R  E+P +  SP M NRGLD+SVIR IP F+FK+EG      G
Sbjct: 67  LNWHRIDILRRFSLSRNRNQEDPLMGYSPAMENRGLDESVIRSIPIFKFKKEGNGSGDIG 126

Query: 127 ------CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTTR-YP 179
                 C VCLNEFQE + LR++PNCSH FH+DCID+WLQ+NANCPLCR SIS TTR  P
Sbjct: 127 GRTLSECAVCLNEFQENEKLRIIPNCSHVFHIDCIDVWLQNNANCPLCRNSISSTTRSIP 186

Query: 180 IDQIIAPRPSPQGSQQFSESLMGGDDDFVVIELGG------------EDEVLFSHRQQER 227
            D+IIAP  SPQ    +SESL+GGD+D+VVIELG              D+ L +   QER
Sbjct: 187 FDRIIAPSSSPQDPNPYSESLIGGDEDYVVIELGNINNNIINNSHNPADQTLLA--AQER 244

Query: 228 DNSSEVFDQPRSQSPKTLEQKL---GNS-----KRKKRHHVSIMGDECIDVRQKDDHFST 279
             +S      R  SP +  QKL   G+S     K +K   ++ MGDECID+R KDD F+ 
Sbjct: 245 LMNSGELSIARPISPSSRRQKLEQRGSSGAVQKKSRKFSKLTSMGDECIDIRGKDDQFAI 304

Query: 280 QPIRRSFSLDSAADRQLYITVQAIVQQNGH---NGEVSTNEECS-ARVCKSFFPFGRVRG 335
           QPIRRSFS+DS+ADRQLY+++Q I+ Q+     + +VS  E CS  R  ++FF FG  RG
Sbjct: 305 QPIRRSFSMDSSADRQLYLSIQEIILQSRQQPIDHQVSPIEGCSNGRPRRTFFSFGHGRG 364

Query: 336 SRNAVLPVEFE 346
           SRN+VLPV  E
Sbjct: 365 SRNSVLPVFLE 375

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503604|ref|XP_003520597.1| PREDICTED: RING-H2 finger protein ATL1-like [Glycine max]

 Score =  320 bits (819), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 172/321 (53%), Positives = 218/321 (67%), Gaps = 30/321 (9%)

Query: 36  SAFPILAIAILSIMGTAFLLLSYYVFVSKCCNNWHLIDLLRRFSVLRARQIE-----EPF 90
           S  PILAI + SI  TAF+L++Y   V+KCC+NWH ++ LR  S L+A Q E     +PF
Sbjct: 30  SDLPILAIIVPSIFVTAFILITYLTLVTKCCSNWHQLNPLRWISTLQASQHEHQDHQDPF 89

Query: 91  IALS--PTMWNRGLDDSVIRDIPTFQ-FKREGED--MSIYGCVVCLNEFQEQDMLRVLPN 145
           IALS  P MWN GLD+S I++IPT +  K E E    S+ GCVVCL EFQE DML+VLPN
Sbjct: 90  IALSLSPMMWNHGLDESAIKEIPTLECTKAEAEKNIQSVCGCVVCLTEFQEHDMLKVLPN 149

Query: 146 CSHAFHLDCIDIWLQSNANCPLCRTSISGTTRYPIDQIIAPRPSPQGSQQFSESLMGGDD 205
           CSHAFHL CIDIWLQ+NANCPLCR+SI+         +IAP  SPQ SQ    S MG D+
Sbjct: 150 CSHAFHLHCIDIWLQTNANCPLCRSSITS--------VIAPSSSPQDSQLL--SYMGSDE 199

Query: 206 DFVVIELGGED-EVLFSHRQQERDNSSEVFDQPRSQSPKTLEQKLGNSKRKKRHHVSIMG 264
           DFVVIELGG+    L    Q+ER ++       R ++ + +     +S RK  HHVSIMG
Sbjct: 200 DFVVIELGGQHVATLPQMMQRERSDT-------RERNQRIVGYSRSHSTRKC-HHVSIMG 251

Query: 265 DECIDVRQKDDHFSTQPIRRSFSLDSAADRQLYITVQAIVQQNG-HNGEVSTNEECSARV 323
           DECIDVR+KD+ FS QPIRRSFS+DSA D+QLY+  Q ++QQN  H  + S +E+C++R 
Sbjct: 252 DECIDVRKKDEQFSIQPIRRSFSMDSANDKQLYLDFQTMIQQNNRHQNQASASEDCNSRS 311

Query: 324 CKSFFPFGRVRGSRNAVLPVE 344
            +SFFPF   RGS+  V+P+E
Sbjct: 312 RRSFFPFRYARGSKTLVVPLE 332

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	347
TAIR|locus:2176436	375	AT5G43420 [Arabidopsis thalian	0.873	0.808	0.456	3e-69
TAIR|locus:2018334	381	AT1G04360 [Arabidopsis thalian	0.636	0.580	0.482	5.1e-51
TAIR|locus:2151421	362	AT5G17600 [Arabidopsis thalian	0.403	0.386	0.386	4.7e-29
TAIR|locus:4515103413	310	ATL4H [Arabidopsis thaliana (t	0.463	0.519	0.407	5.3e-24
TAIR|locus:2096444	356	AT3G03550 [Arabidopsis thalian	0.636	0.620	0.315	2.3e-23
UNIPROTKB|Q7XLY8	383	LOC_Os04g50100 "E3 ubiquitin-p	0.553	0.501	0.328	5.5e-21
TAIR|locus:2089398	304	ATL2 "TOXICOS EN LEVADURA 2" [	0.446	0.509	0.321	4.4e-20
TAIR|locus:2054049	423	MEE16 "maternal effect embryo	0.429	0.352	0.345	2.9e-18
TAIR|locus:505006547	367	AT4G33565 [Arabidopsis thalian	0.423	0.400	0.374	3.1e-18
TAIR|locus:2057861	237	AT2G27940 [Arabidopsis thalian	0.368	0.540	0.308	4e-18

TAIR|locus:2176436 AT5G43420 [Arabidopsis thaliana (taxid:3702)]

 Score = 702 (252.2 bits), Expect = 3.0e-69, P = 3.0e-69
 Identities = 157/344 (45%), Positives = 224/344 (65%)

Query:    32 SNSESAFPILAIAILSIMGTAFLLLSYYVFVSKCCNNWHLIDLLRRFSVLRARQIEE-PF 90
             S++ ++FPILA+A++ I+ TAFLL+SYYVFV KCC NWH ID+L RFS+ R R+ ++ P 
Sbjct:    28 SSTGTSFPILAVAVIGILATAFLLVSYYVFVIKCCLNWHRIDILGRFSLSRRRRNDQDPL 87

Query:    91 IALSPTMWNRGLDDSVIRDIPTFQFKR-----------EGEDMS---IYGCVVCLNEFQE 136
             +  SP + +RGLD+SVIR IP F+FK+           EGE+        C VCL+EFQ+
Sbjct:    88 MVYSPELRSRGLDESVIRAIPIFKFKKRYDQNDGVFTGEGEEEEEKRSQECSVCLSEFQD 147

Query:   137 QDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTTRYPIDQIIAPRPSPQGSQQF 196
             ++ LR++PNCSH FH+DCID+WLQ+NANCPLCRT +S  T +P D++ AP  SP+     
Sbjct:   148 EEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRVSCDTSFPPDRVSAPSTSPENLV-- 205

Query:   197 SESLMGGDDDFVVIELG---GEDEVLFSHRQ----QERDNSSEVFDQPR----SQSPKTL 245
                ++ G++++VVIELG   G D     H +    QER NS  + ++      S SPK L
Sbjct:   206 ---MLRGENEYVVIELGSSIGSDRDSPRHGRLLTGQERSNSGYLLNENTQNSISPSPKKL 262

Query:   246 EQKLGNSKRKKRHHVSIMGDECIDVRQ-KDDHF-STQPIRRSFSLDSAADRQLYITVQAI 303
             ++     K +K H ++ MGDECID+R+ KD+ F S QPIRRS S+DS+ADRQLY+ VQ  
Sbjct:   263 DRGGLPRKFRKLHKMTSMGDECIDIRRGKDEQFGSIQPIRRSISMDSSADRQLYLAVQEA 322

Query:   304 VQQN------GHNGEVSTNEE--CSARVCKSFFPFGRVRGSRNA 339
             +++N      G  G  S++     +++V +SFF FG  R SR++
Sbjct:   323 IRKNREVLVVGDGGGCSSSSGNVSNSKVKRSFFSFGSSRRSRSS 366

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2018334 AT1G04360 [Arabidopsis thaliana (taxid:3702)]

 Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
 Identities = 123/255 (48%), Positives = 159/255 (62%)

Query:    32 SNSESAFPILAIAILSIMGTAFLLLSYYVFVSKCCNNWHLIDLLRRFSVLRARQIEE-PF 90
             S+S + FPILAIA++ I+ TAFLL+SYY+FV KCC NWH ID+ RR    R R  ++ P 
Sbjct:    35 SSSGTNFPILAIAVIGILATAFLLVSYYIFVIKCCLNWHQIDIFRR----RRRSSDQNPL 90

Query:    91 IALSPTMWNRGLDDSVIRDIPTFQFKREG-----EDMSIYG--CVVCLNEFQEQDMLRVL 143
             +  SP   NRGLD+S IR IP F+FK+       ED S     C VCLNEFQE + LR++
Sbjct:    91 MIYSPHEVNRGLDESAIRAIPVFKFKKRDVVAGEEDQSKNSQECSVCLNEFQEDEKLRII 150

Query:   144 PNCSHAFHLDCIDIWLQSNANCPLCRTSISGTTRYPIDQIIAPRPSPQGSQQFSES---- 199
             PNC H FH+DCIDIWLQ NANCPLCRTS+S    + +D I AP  SP+ +   S +    
Sbjct:   151 PNCCHVFHIDCIDIWLQGNANCPLCRTSVSCEASFTLDLISAPS-SPRENSPHSRNRNLE 209

Query:   200 ---LMGGDDDFVVIELG---GEDEVLFSH----RQQERDNSSEVF--DQPRSQSPKTLEQ 247
                ++GGDDDFVVIELG   G +     +     +QER  S+EV   + P+S SP  L  
Sbjct:   210 PGLVLGGDDDFVVIELGASNGNNRESVRNIDFLTEQERVTSNEVSTGNSPKSVSP--LPI 267

Query:   248 KLGNS---KRKKRHH 259
             K GN    K++++ H
Sbjct:   268 KFGNRGMYKKERKFH 282

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2151421 AT5G17600 [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
 Identities = 56/145 (38%), Positives = 87/145 (60%)

Query:    32 SNSESAFPILAIAILSIMGTAFLLLSYYVFVSKCCNNWHLIDLLRRFSVLRARQIEEPFI 91
             S+S S+F  L IA++ I+ +A +L+SYY  +SK C+  H          L      E F 
Sbjct:    48 SSSSSSFSPLLIALIGILTSALILVSYYTLISKYCHRHHQTS---SSETLNLNHNGEGFF 104

Query:    92 ALSPTMWNRG--LDDSVIRDIPTFQFKREGEDMSIYGCVVCLNEFQEQDMLRVLPNCSHA 149
             + +  +   G  L++S+I+ I  +++K     +    C VCL+EF+E + LR+LP C+HA
Sbjct:   105 SSTQRISTNGDGLNESMIKSITVYKYKSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHA 164

Query:   150 FHLDCIDIWLQSNANCPLCRTSISG 174
             FHL CID WL+S++NCPLCR  ++G
Sbjct:   165 FHLPCIDTWLKSHSNCPLCRAFVTG 189

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:4515103413 ATL4H [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 73/179 (40%), Positives = 94/179 (52%)

Query:    18 PIKSQEMLTNQASLSNSESAFPILAIAILSIMGTAFLLLSYYVFVSK-CCN---NWHLID 73
             PI S E   N    SN   + P L IAI  I  TAFLL +YY  VSK C N   N    +
Sbjct:    41 PI-SYEQFLNDGVASNPNLS-P-LVIAIFGIFATAFLLAAYYTLVSKYCANDTTNEAASE 97

Query:    74 LLRRFSVLRARQIE-----EPFIALSPTMWNRGLDDSVIRDIPTFQFKREGEDMSIYG-- 126
               R   +L     E     +PF   S T    GLDD++I+ I  F+ K+      I G  
Sbjct:    98 SGRSDIILDVNSPERGDQDDPFALESSTA---GLDDTLIKKIGFFKLKKHQNGFKINGTD 154

Query:   127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSIS-GTTRYPIDQII 184
             C +CL EF E + LR+LP C+H FH+ CID WL+S++NCPLCR  I   TT+ P   ++
Sbjct:   155 CSICLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPLCRAKIIVPTTQQPEHHVV 213

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2096444 AT3G03550 [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 77/244 (31%), Positives = 118/244 (48%)

Query:    33 NSESAFPILAIAILSIMGTAFLLLSYYVFVSKCCNNW-HLID-----LLRRFS---VLRA 83
             +S S F  L IA++ I+ +AF+L+SYY  +SK C+   H         + R S     + 
Sbjct:    51 SSSSDFSPLLIALIGILASAFILVSYYTLISKYCHRRRHNSSSTSAAAINRISSDYTWQG 110

Query:    84 RQIEEPFIALSPTMW-----NRGLDDSVIRDIPTFQFKREGEDMSIYGCVVCLNEFQEQD 138
                     A +P          GLD+S+I+ I  +++++    +    C VCL+EFQE +
Sbjct:   111 TNNNNNNGATNPNQTIGGGGGDGLDESLIKSITVYKYRKMDGFVESSDCSVCLSEFQENE 170

Query:   139 MLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTTRYPIDQIIAPRPSPQGSQQFSE 198
              LR+LP C+HAFH+ CID WL+S++NCPLCR  I  ++   I  +     + Q     + 
Sbjct:   171 SLRLLPKCNHAFHVPCIDTWLKSHSNCPLCRAFIVTSSAVEIVDL-----TNQQIVTENN 225

Query:   199 SLMGGDDDFVVIELGGEDEVLFSHRQQERDNSSEVFDQPRSQSPKTLEQKLGNSKRKKRH 258
             S+  GDD  VV+ L  E+    S  + E  N       P  Q  +  E++   S      
Sbjct:   226 SISTGDDSVVVVNLDLEN----SRSRNETVNEGSTPKPPEMQDSRDGEERRSASLNSGGG 281

Query:   259 HVSI 262
              VSI
Sbjct:   282 VVSI 285

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0080167 "response to karrikin" evidence=IEP

UNIPROTKB|Q7XLY8 LOC_Os04g50100 "E3 ubiquitin-protein ligase Os04g0590900" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 253 (94.1 bits), Expect = 5.5e-21, P = 5.5e-21
 Identities = 75/228 (32%), Positives = 113/228 (49%)

Query:    29 ASLSNSESAFPI---LAIAILSIMGTAFLLLSYYVFVSKCCNNWHLIDLLRRFSVLRARQ 85
             A  S  +S+ P+   L IAI+ ++ +AFLL+SYY F+SK C     +  LR   V  +  
Sbjct:    43 AGTSADDSSGPVFSPLVIAIIGVLASAFLLVSYYTFISKYCGT---VSSLRG-RVFGSSS 98

Query:    86 IEEPF-------------IALSPTMWN----RGLDDSVIRDIPTFQFKREGEDMSIYGCV 128
                 +              + S   WN     GLD+++I  I   +++R    +    C 
Sbjct:    99 GGAAYGGGAGSGGRHGHGQSRSHESWNVSPPSGLDETLINKITVCKYRRGDGFVHTTDCS 158

Query:   129 VCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTTRYPIDQIIAPRP 188
             VCL EF + + LR+LP CSHAFH  CID WL+S++NCPLCR +I+  T      +    P
Sbjct:   159 VCLGEFSDGESLRLLPRCSHAFHQQCIDTWLKSHSNCPLCRANITFVT------VGLASP 212

Query:   189 SPQGSQQFSESLMGGDDDF-VVIELGGEDEVLFSHRQQERDNSSEVFD 235
              P+G     E+  GGD+   VV+ + G + +     QQE  + +   D
Sbjct:   213 EPEGCAP-GET--GGDNTHEVVVVMDGLENLC--EEQQEAVSRASTAD 255

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

TAIR|locus:2089398 ATL2 "TOXICOS EN LEVADURA 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 55/171 (32%), Positives = 87/171 (50%)

Query:    10 NQGDQALAPIKSQEMLTNQASLSNSESAFPILAIAILSIMGTAFLLLSYYVFVSKCCNNW 69
             N  DQ   P + ++   N +       +  I+  AI+ +     L++  +++       W
Sbjct:     2 NSNDQDPIPFRPED--NNFSGSKTYAMSGKIMLSAIVILFFVVILMVFLHLYA-----RW 54

Query:    70 HLIDLLRRFSVLRARQ--------IEEPFIALSPTMWNRGLDDSVIRDIPTFQFKREGED 121
             +L+   RR    R+R           +P  A +  + +RGLD +VI+ +P F F  E   
Sbjct:    55 YLLRARRRHLRRRSRNRRATMVFFTADPSTAATSVVASRGLDPNVIKSLPVFTFSDETHK 114

Query:   122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSI 172
               I  C VCL+EF+E +  RVLPNC H FH+DCID+W  S++ CPLCR+ +
Sbjct:   115 DPIE-CAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFHSHSTCPLCRSLV 164

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0006952 "defense response" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2054049 MEE16 "maternal effect embryo arrest 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 2.9e-18, Sum P(2) = 2.9e-18
 Identities = 56/162 (34%), Positives = 90/162 (55%)

Query:    16 LAPIKSQEMLTNQASLSNSESAFPILAIAILS-IMGTAFLLLSYYVFVSKCCNNWHLIDL 74
             L P+KS   L+N  S         I+ ++I+  I G   +L+ + +  S+        D 
Sbjct:    23 LIPLKSNTSLSNLNSKITPNILLIIIILSIIFFISGLLHILVKFLLTPSRESRE----DY 78

Query:    75 LRRFSVLRARQIEEPFIALSPTMWNRGLDDSVIRDIPTFQFKR-EGEDMSIYGCVVCLNE 133
                 + L+  Q+++ F      + + G+D S+I  +P F +K   G  +S + C VCL E
Sbjct:    79 FDNVTALQG-QLQQLF-----NLHDSGVDQSLIDTLPVFHYKSIVGLKISPFDCPVCLCE 132

Query:   134 FQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSI-SG 174
             F+ +D LR+LP CSHAFH++CID WL S++ CPLCR+++ SG
Sbjct:   133 FETEDKLRLLPKCSHAFHVECIDTWLLSHSTCPLCRSNLLSG 174

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

TAIR|locus:505006547 AT4G33565 [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 3.1e-18, Sum P(2) = 3.1e-18
 Identities = 58/155 (37%), Positives = 84/155 (54%)

Query:    25 LTNQASLSNSESAFPILAIAILSIMGTAFLLLSYYVFVSKCCNNWHLIDLLRRFSVLRAR 84
             L+  A + + ++   IL I+  SI+ T FLL    +           I   RR+S+  AR
Sbjct:   109 LSPPAEIHHDDNLKRILIISASSIITTLFLLTLLVLCFKFYYRRRRSITTSRRWSMEEAR 168

Query:    85 QIE----EPFIALSPTMWN-R--GLDDSVIRDIPTFQFKREGEDMSIYGCVVCLNEFQEQ 137
               +     P I   P +W+ R  GL+ +VI  I   Q+ ++   +    C VCL+EF+E+
Sbjct:   169 NWDFDGPAPVIVDHP-IWHIRTIGLNPTVISSIKVCQYSKKDGVVEGTDCSVCLSEFEEE 227

Query:   138 DMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSI 172
             + LR+LP C HAFHL CID WL+S+ NCPLCR  I
Sbjct:   228 ETLRLLPKCKHAFHLYCIDTWLRSHTNCPLCRAPI 262

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2057861 AT2G27940 [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 4.0e-18, P = 4.0e-18
 Identities = 41/133 (30%), Positives = 74/133 (55%)

Query:    40 ILAIAILSIMGTAFLLLSYYVFVSKCCNNWHLIDLLR-RFSVLRARQIEEPFIALSPTMW 98
             IL +A+   MG  F  + +  F     +   +  + R R S +  R++    +   P  +
Sbjct:    56 ILLVALF-FMG--FFSVYFRHFADSSSSTVDISSMPRTRSSRMSPRRLSTSVVVSRPYSF 112

Query:    99 NRGLDDSVIRDIPTFQFKREGEDMSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIW 158
              RGLD   +R +P +++ +  +  +   CV+CL++F+E + ++V+P+C H FH+DC+D W
Sbjct:   113 RRGLDSQAVRSLPVYRYTKAAKQRN-EDCVICLSDFEEGETVKVIPHCGHVFHVDCVDTW 171

Query:   159 LQSNANCPLCRTS 171
             L S   CPLCR++
Sbjct:   172 LSSYVTCPLCRSN 184

GO:0008270 "zinc ion binding" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00020367 hypothetical protein (344 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	347
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	2e-14
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	7e-12
pfam12678	73	pfam12678, zf-rbx1, RING-H2 zinc finger	1e-11
PHA02929	238	PHA02929, PHA02929, N1R/p28-like protein; Provisio	2e-08
COG5540	374	COG5540, COG5540, RING-finger-containing ubiquitin	4e-08
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	3e-07
smart00184	40	smart00184, RING, Ring finger	3e-07
COG5243	491	COG5243, HRD1, HRD ubiquitin ligase complex, ER me	1e-05
pfam00097	40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	2e-05
COG5194	88	COG5194, APC11, Component of SCF ubiquitin ligase	4e-05
pfam12861	85	pfam12861, zf-Apc11, Anaphase-promoting complex su	2e-04
COG5219	1525	COG5219, COG5219, Uncharacterized conserved protei	8e-04
pfam13920	49	pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RI	0.002

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 66.3 bits (162), Expect = 2e-14
 Identities = 22/45 (48%), Positives = 31/45 (68%), Gaps = 1/45 (2%)

Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTS 171
           C +CL+EF+  + + VLP C H FH +C+D WL+S+  CPLCR  
Sbjct: 3   CPICLDEFEPGEEVVVLP-CGHVFHKECLDKWLRSSNTCPLCRAP 46

Length = 46

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 59.0 bits (143), Expect = 7e-12
 Identities = 24/47 (51%), Positives = 27/47 (57%), Gaps = 4/47 (8%)

Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS-NANCPLCRTSI 172
           C +CL EF+E     VL  C H F   CID WL+S    CPLCRT I
Sbjct: 2   CPICLEEFRE---PVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45

Length = 45

>gnl|CDD|221705 pfam12678, zf-rbx1, RING-H2 zinc finger

 Score = 59.4 bits (144), Expect = 1e-11
 Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 9/58 (15%)

Query: 121 DMSIYGCVVCLNEFQE---------QDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCR 169
           D+    C +C N F            D   V   C HAFHL CI  WL++   CPLCR
Sbjct: 16  DIEDDVCAICRNHFDGTCPECKSPGDDCPVVWGECGHAFHLHCISRWLKTRNTCPLCR 73

There are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell cycle control. Length = 73

>gnl|CDD|222944 PHA02929, PHA02929, N1R/p28-like protein; Provisional

 Score = 54.0 bits (130), Expect = 2e-08
 Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 4/48 (8%)

Query: 127 CVVCLNEFQEQDM----LRVLPNCSHAFHLDCIDIWLQSNANCPLCRT 170
           C +C+ +  ++++      +L NC+H F ++CIDIW +    CP+CRT
Sbjct: 177 CAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRT 224

Length = 238

>gnl|CDD|227827 COG5540, COG5540, RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 53.8 bits (129), Expect = 4e-08
 Identities = 24/47 (51%), Positives = 33/47 (70%), Gaps = 2/47 (4%)

Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNAN-CPLCRTSI 172
           C +C++ F + D LRVLP C H FH+ C+D WL   +N CP+CRT+I
Sbjct: 326 CAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAI 371

Length = 374

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 46.3 bits (110), Expect = 3e-07
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)

Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRT 170
           C +CL+  ++     VL  C H F  +CI  +L+  + CP+CRT
Sbjct: 5   CPICLDLLRDP---VVLTPCGHVFCRECILRYLKKKSKCPICRT 45

Length = 45

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 46.0 bits (109), Expect = 3e-07
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 4/43 (9%)

Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS-NANCPLC 168
           C +CL E+ +     +LP C H F   CI  WL+S N  CP+C
Sbjct: 1   CPICLEEYLK--DPVILP-CGHTFCRSCIRKWLESGNNTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 15/93 (16%)

Query: 99  NRGLDDSVIRDIPTFQFKREGEDMSIYGCVVCLNEFQEQDMLRVLPN---------CSHA 149
            + L+       PT   ++         C +C++E    D   +            C H 
Sbjct: 268 TKDLNAMY----PTATEEQLTNSDRT--CTICMDEMFHPDHEPLPRGLDMTPKRLPCGHI 321

Query: 150 FHLDCIDIWLQSNANCPLCRTSISGTTRYPIDQ 182
            HL C+  WL+    CP+CR  +      P   
Sbjct: 322 LHLHCLKNWLERQQTCPICRRPVIFDQSSPTPA 354

Length = 491

>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)

 Score = 41.3 bits (97), Expect = 2e-05
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 4/43 (9%)

Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNA-NCPLC 168
           C +CL E ++   +  LP C H F   CI  WL+S    CPLC
Sbjct: 1   CPICLEEPKDPVTI--LP-CGHLFCSKCILSWLESGNVTCPLC 40

The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid. Many proteins containing a RING finger play a key role in the ubiquitination pathway. Length = 40

>gnl|CDD|227521 COG5194, APC11, Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

 Score = 41.4 bits (97), Expect = 4e-05
 Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 12/61 (19%)

Query: 121 DMSIYGCVVCLNEFQE------------QDMLRVLPNCSHAFHLDCIDIWLQSNANCPLC 168
           D+ I  C +C N                 +   V   C+HAFH  CI  WL +   CPL 
Sbjct: 17  DIPIDVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLD 76

Query: 169 R 169
           R
Sbjct: 77  R 77

Length = 88

>gnl|CDD|193335 pfam12861, zf-Apc11, Anaphase-promoting complex subunit 11 RING-H2 finger

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 3/33 (9%)

Query: 142 VLPNCSHAFHLDCIDIWLQ---SNANCPLCRTS 171
           V   C H FH+ CI  WL    S   CP+CR +
Sbjct: 48  VWGKCKHNFHMHCILKWLATETSKGLCPMCRQT 80

Apc11 is one of the subunits of the anaphase-promoting complex or cyclosome. The APC subunits are cullin family proteins with ubiquitin ligase activity. Polyubiquitination marks proteins for degradation by the 26S proteasome and is carried out by a cascade of enzymes that includes ubiquitin-activating enzymes (E1s), ubiquitin-conjugating enzymes (E2s), and ubiquitin ligases (E3s). Apc11 acts as an E3 enzyme and is responsible for recruiting E2s to the APC and for mediating the subsequent transfer of ubiquitin to APC substrates in vivo. In Saccharomyces cerevisiae this RING-H2 finger protein defines the minimal ubiquitin ligase activity of the APC, and the integrity of the RING-H2 finger is essential for budding yeast cell viability. Length = 85

>gnl|CDD|227544 COG5219, COG5219, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

 Score = 41.2 bits (96), Expect = 8e-04
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 12/63 (19%)

Query: 121  DMSIYG---CVVCLNEFQEQDMLRVLPN-----CSHAFHLDCIDIWLQS--NANCPLCRT 170
            D    G   C +C +     D  R LP+     C + FH  C+  W  S   +NCPLCR+
Sbjct: 1463 DEKFSGHEECAICYSVLDMVD--RSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRS 1520

Query: 171  SIS 173
             I+
Sbjct: 1521 EIT 1523

Length = 1525

>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger)

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 6/50 (12%)

Query: 127 CVVCLNEFQEQDMLRVLPNCSH-AFHLDCIDIWLQSNANCPLCRTSISGT 175
           CV+CL     +++  V   C H     +C    L+S   CP+CR  I   
Sbjct: 5   CVICLER--PRNV--VFLPCGHLCLCEECAKR-LRSKKKCPICRQPIESV 49

Length = 49

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	347
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	99.81
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	99.5
PHA02929	238	N1R/p28-like protein; Provisional	99.3
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	99.25
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	99.25
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	99.23
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.9
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.9
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.87
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	98.86
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	98.82
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.82
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	98.8
PHA02926	242	zinc finger-like protein; Provisional	98.76
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	98.71
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.64
PF14634	44	zf-RING_5: zinc-RING finger domain	98.62
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	98.61
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.59
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.58
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.5
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.49
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.36
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	98.35
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	98.27
COG5219	1525	Uncharacterized conserved protein, contains RING Z	98.26
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	98.19
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	98.18
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.17
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	98.07
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	97.97
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	97.96
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	97.9
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	97.87
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	97.86
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	97.84
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	97.8
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	97.8
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	97.78
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	97.77
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	97.73
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	97.56
KOG0825	1134	consensus PHD Zn-finger protein [General function	97.52
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	97.49
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.48
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	97.26
KOG4445	368	consensus Uncharacterized conserved protein, conta	97.22
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	97.14
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	97.14
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	97.0
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	96.86
KOG0801	205	consensus Predicted E3 ubiquitin ligase [Posttrans	96.83
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	96.72
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.58
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	96.52
KOG3970	299	consensus Predicted E3 ubiquitin ligase [Posttrans	96.51
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	96.43
KOG0297	391	consensus TNF receptor-associated factor [Signal t	96.4
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	96.34
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	96.27
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	96.14
PHA02862	156	5L protein; Provisional	95.37
COG5152	259	Uncharacterized conserved protein, contains RING a	95.31
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	95.31
KOG2660	331	consensus Locus-specific chromosome binding protei	95.19
KOG1002	791	consensus Nucleotide excision repair protein RAD16	95.19
KOG1952	950	consensus Transcription factor NF-X1, contains NFX	95.18
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	95.01
PHA03096	284	p28-like protein; Provisional	94.96
PHA02825	162	LAP/PHD finger-like protein; Provisional	94.71
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	94.63
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	94.63
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	94.48
KOG3039	303	consensus Uncharacterized conserved protein [Funct	94.46
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	94.32
COG5222	427	Uncharacterized conserved protein, contains RING Z	94.29
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	94.02
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	93.97
COG5236	493	Uncharacterized conserved protein, contains RING Z	93.79
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	93.65
PF04641	260	Rtf2: Rtf2 RING-finger	93.43
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	93.15
KOG4739	233	consensus Uncharacterized protein involved in syna	93.08
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	93.03
KOG3268	234	consensus Predicted E3 ubiquitin ligase [Posttrans	92.61
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	92.06
KOG1940	276	consensus Zn-finger protein [General function pred	90.66
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	90.28
KOG1001	674	consensus Helicase-like transcription factor HLTF/	90.22
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	90.07
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	89.41
KOG0298	1394	consensus DEAD box-containing helicase-like transc	89.22
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	88.93
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	88.62
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	87.97
PF01708	91	Gemini_mov: Geminivirus putative movement protein	87.82
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	86.5
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	86.1
KOG1100	207	consensus Predicted E3 ubiquitin ligase [Posttrans	85.72
COG5183	1175	SSM4 Protein involved in mRNA turnover and stabili	85.04
COG5175	480	MOT2 Transcriptional repressor [Transcription]	84.94
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	84.47
KOG0269	839	consensus WD40 repeat-containing protein [Function	83.5
KOG1609	323	consensus Protein involved in mRNA turnover and st	82.88
PF03854	50	zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc	82.86
KOG2034	911	consensus Vacuolar sorting protein PEP3/VPS18 [Int	81.75

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=1e-19  Score=176.86  Aligned_cols=81  Identities=31%  Similarity=0.797  Sum_probs=70.2

Q ss_pred             CCCCHHHHhcCCceeeeccCCCCccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCC-CCcccCCCCCCCCC
Q 019053          100 RGLDDSVIRDIPTFQFKREGEDMSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNAN-CPLCRTSISGTTRY  178 (347)
Q Consensus       100 ~gl~~~~i~~lp~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~t-CPlCR~~i~~~~~~  178 (347)
                      +++.+..++++|..+|+..........|+||||+|+.||++++|| |+|.||..|||+||..+.+ ||+||+++......
T Consensus       205 ~r~~k~~l~~~p~~~f~~~~~~~~~~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~~~  283 (348)
T KOG4628|consen  205 NRLIKRLLKKLPVRTFTKGDDEDATDTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDSGS  283 (348)
T ss_pred             hhhHHHHHhhCCcEEeccccccCCCceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCCCCCCC
Confidence            467788999999999998866554479999999999999999999 9999999999999988755 99999999877655


Q ss_pred             CCC
Q 019053          179 PID  181 (347)
Q Consensus       179 ~~~  181 (347)
                      +..
T Consensus       284 ~~~  286 (348)
T KOG4628|consen  284 EPV  286 (348)
T ss_pred             CCc
Confidence            433

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=99.50  E-value=9.2e-15  Score=101.95  Aligned_cols=44  Identities=45%  Similarity=1.167  Sum_probs=40.5

Q ss_pred             CcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCccc
Q 019053          125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCR  169 (347)
Q Consensus       125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR  169 (347)
                      ++|+||+++|..++.+..++ |+|.||.+||..|++.+.+||+||
T Consensus         1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred             CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence            36999999999999999998 999999999999999999999997

...

>PHA02929 N1R/p28-like protein; Provisional

Probab=99.30  E-value=1.6e-12  Score=121.66  Aligned_cols=76  Identities=26%  Similarity=0.698  Sum_probs=59.1

Q ss_pred             CCCCCHHHHhcCCceeeecc--CCCCccCcccccccccccCCc----eeecCCCCccccHHHHHHHHhcCCCCCcccCCC
Q 019053           99 NRGLDDSVIRDIPTFQFKRE--GEDMSIYGCVVCLNEFQEQDM----LRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSI  172 (347)
Q Consensus        99 ~~gl~~~~i~~lp~~~~~~~--~~~~~~~~C~ICl~~~~~~~~----~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i  172 (347)
                      .+|..+..++.+|.+..+-.  .......+|+||++++.+++.    +.+++.|+|.||.+||..|+..+.+||+||..+
T Consensus       147 k~~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~  226 (238)
T PHA02929        147 KGKNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPF  226 (238)
T ss_pred             hcchhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEe
Confidence            45678889999999875543  223345789999999876541    234545999999999999999999999999987


Q ss_pred             CC
Q 019053          173 SG  174 (347)
Q Consensus       173 ~~  174 (347)
                      ..
T Consensus       227 ~~  228 (238)
T PHA02929        227 IS  228 (238)
T ss_pred             eE
Confidence            63

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.25  E-value=3.1e-12  Score=121.35  Aligned_cols=50  Identities=46%  Similarity=1.129  Sum_probs=45.6

Q ss_pred             cCcccccccccccCCceeecCCCCccccHHHHHHHHhc-CCCCCcccCCCCC
Q 019053          124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS-NANCPLCRTSISG  174 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-~~tCPlCR~~i~~  174 (347)
                      .-+|+|||++|..++.+++|| |.|.||..|+++|+.. +..||+||+++.+
T Consensus       323 GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP  373 (374)
T COG5540         323 GVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIPP  373 (374)
T ss_pred             CceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCCCCC
Confidence            478999999999999999999 9999999999999985 4569999999864

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.25  E-value=5.1e-12  Score=97.84  Aligned_cols=45  Identities=38%  Similarity=0.962  Sum_probs=35.5

Q ss_pred             cCcccccccccccC----------CceeecCCCCccccHHHHHHHHhcCCCCCccc
Q 019053          124 IYGCVVCLNEFQEQ----------DMLRVLPNCSHAFHLDCIDIWLQSNANCPLCR  169 (347)
Q Consensus       124 ~~~C~ICl~~~~~~----------~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR  169 (347)
                      .+.|+||++.|.+.          -.+...+ |||.||..||..||+.+.+||+||
T Consensus        19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~-C~H~FH~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   19 DDNCAICREPLEDPCPECQAPQDECPIVWGP-CGHIFHFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             CSBETTTTSBTTSTTCCHHHCTTTS-EEEET-TSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred             CCcccccChhhhChhhhhcCCccccceEecc-cCCCEEHHHHHHHHhcCCcCCCCC
Confidence            34599999999332          2344455 999999999999999999999997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=1.1e-11  Score=120.30  Aligned_cols=65  Identities=31%  Similarity=0.713  Sum_probs=50.1

Q ss_pred             hcCCceeeeccCCCCccCcccccccc-cccC---------CceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053          108 RDIPTFQFKREGEDMSIYGCVVCLNE-FQEQ---------DMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT  175 (347)
Q Consensus       108 ~~lp~~~~~~~~~~~~~~~C~ICl~~-~~~~---------~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~  175 (347)
                      +.+|+.+.++.  .+++..|+||+++ |..+         ...+.|| |||+||.+|++.|++.+++||+||.++...
T Consensus       273 ~~~~t~t~eql--~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPICr~p~ifd  347 (491)
T COG5243         273 AMYPTATEEQL--TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPICRRPVIFD  347 (491)
T ss_pred             hhcchhhhhhh--cCCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCcccCccccc
Confidence            34565554443  3456789999999 4443         2467898 999999999999999999999999995544

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.90  E-value=1.2e-09  Score=74.32  Aligned_cols=44  Identities=52%  Similarity=1.235  Sum_probs=36.6

Q ss_pred             cccccccccccCCceeecCCCCccccHHHHHHHHhc-CCCCCcccCCC
Q 019053          126 GCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS-NANCPLCRTSI  172 (347)
Q Consensus       126 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-~~tCPlCR~~i  172 (347)
                      +|+||++.+  .+.+..++ |+|.||..|++.|++. +..||+||..+
T Consensus         1 ~C~iC~~~~--~~~~~~~~-C~H~~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEF--REPVVLLP-CGHVFCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhh--hCceEecC-CCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence            499999998  33455555 9999999999999987 67799998764

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.90  E-value=7.4e-10  Score=102.08  Aligned_cols=56  Identities=32%  Similarity=0.790  Sum_probs=45.0

Q ss_pred             CCccCcccccccccccCCceeecCCCCccccHHHHHHHHhcC---CCCCcccCCCCCCCCCCC
Q 019053          121 DMSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSN---ANCPLCRTSISGTTRYPI  180 (347)
Q Consensus       121 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~---~tCPlCR~~i~~~~~~~~  180 (347)
                      .....+|.|||+.-++   .+++. |||.||+.||-+||+.+   +.||+||..|...+.+|+
T Consensus        44 ~~~~FdCNICLd~akd---PVvTl-CGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPl  102 (230)
T KOG0823|consen   44 DGGFFDCNICLDLAKD---PVVTL-CGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPL  102 (230)
T ss_pred             CCCceeeeeeccccCC---CEEee-cccceehHHHHHHHhhcCCCeeCCccccccccceEEee
Confidence            4556899999998555   34554 99999999999999874   348999999998876654

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.87  E-value=1.6e-09  Score=77.44  Aligned_cols=46  Identities=30%  Similarity=0.842  Sum_probs=39.2

Q ss_pred             cCcccccccccccCCceeecCCCCcc-ccHHHHHHHHhcCCCCCcccCCCC
Q 019053          124 IYGCVVCLNEFQEQDMLRVLPNCSHA-FHLDCIDIWLQSNANCPLCRTSIS  173 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~CI~~WL~~~~tCPlCR~~i~  173 (347)
                      +..|.||++...+   +.++| |||. |+..|+..|++....||+||++|.
T Consensus         2 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~   48 (50)
T PF13920_consen    2 DEECPICFENPRD---VVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIE   48 (50)
T ss_dssp             HSB-TTTSSSBSS---EEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred             cCCCccCCccCCc---eEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence            3579999998655   77888 9999 999999999999999999999885

...

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=98.86  E-value=1.3e-09  Score=98.64  Aligned_cols=51  Identities=29%  Similarity=0.805  Sum_probs=41.3

Q ss_pred             ccCcccccccccccCCceeecCCCCccccHHHHHHHHhc----------------CCCCCcccCCCCCCCC
Q 019053          123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS----------------NANCPLCRTSISGTTR  177 (347)
Q Consensus       123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~----------------~~tCPlCR~~i~~~~~  177 (347)
                      +..+|+||++.+++   ..+++ |||.||..||..|+..                ...||+||..+....-
T Consensus        17 ~~~~CpICld~~~d---PVvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~L   83 (193)
T PLN03208         17 GDFDCNICLDQVRD---PVVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATL   83 (193)
T ss_pred             CccCCccCCCcCCC---cEEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcE
Confidence            45789999999866   45676 9999999999999852                2469999999976553

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=1.6e-09  Score=102.63  Aligned_cols=50  Identities=32%  Similarity=0.767  Sum_probs=43.4

Q ss_pred             cCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCCCC
Q 019053          124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTTR  177 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~~~  177 (347)
                      ...|.+||+...+   ..-+| |||+||..||..|......||+||..+.+.+.
T Consensus       239 ~~kC~LCLe~~~~---pSaTp-CGHiFCWsCI~~w~~ek~eCPlCR~~~~pskv  288 (293)
T KOG0317|consen  239 TRKCSLCLENRSN---PSATP-CGHIFCWSCILEWCSEKAECPLCREKFQPSKV  288 (293)
T ss_pred             CCceEEEecCCCC---CCcCc-CcchHHHHHHHHHHccccCCCcccccCCCcce
Confidence            3579999998776   55677 99999999999999999999999999887653

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.82  E-value=3e-09  Score=72.22  Aligned_cols=39  Identities=41%  Similarity=1.161  Sum_probs=32.9

Q ss_pred             ccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcc
Q 019053          127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLC  168 (347)
Q Consensus       127 C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlC  168 (347)
                      |+||++.+.+  .+..++ |||.|+..||..|++.+..||+|
T Consensus         1 C~iC~~~~~~--~~~~~~-CGH~fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRD--PVVVTP-CGHSFCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SS--EEEECT-TSEEEEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccC--cCEECC-CCCchhHHHHHHHHHCcCCCcCC
Confidence            8999999887  346676 99999999999999998899998

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=98.80  E-value=3.4e-09  Score=83.94  Aligned_cols=50  Identities=36%  Similarity=0.793  Sum_probs=38.9

Q ss_pred             cCccccccccccc--------CC-ceeecCCCCccccHHHHHHHHhc---CCCCCcccCCCC
Q 019053          124 IYGCVVCLNEFQE--------QD-MLRVLPNCSHAFHLDCIDIWLQS---NANCPLCRTSIS  173 (347)
Q Consensus       124 ~~~C~ICl~~~~~--------~~-~~~~lp~C~H~FH~~CI~~WL~~---~~tCPlCR~~i~  173 (347)
                      ++.|.||...|..        |+ -..++..|+|.||.+||.+||.+   +..||+||+...
T Consensus        21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence            5679999999973        22 23344469999999999999985   467999999764

>PHA02926 zinc finger-like protein; Provisional

Probab=98.76  E-value=2.9e-09  Score=97.79  Aligned_cols=55  Identities=29%  Similarity=0.767  Sum_probs=41.4

Q ss_pred             CCccCcccccccccccC-----CceeecCCCCccccHHHHHHHHhcC------CCCCcccCCCCCC
Q 019053          121 DMSIYGCVVCLNEFQEQ-----DMLRVLPNCSHAFHLDCIDIWLQSN------ANCPLCRTSISGT  175 (347)
Q Consensus       121 ~~~~~~C~ICl~~~~~~-----~~~~~lp~C~H~FH~~CI~~WL~~~------~tCPlCR~~i~~~  175 (347)
                      ...+.+|+|||+...++     ..-.+|+.|+|.||..||..|...+      .+||+||..+...
T Consensus       167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I  232 (242)
T PHA02926        167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNI  232 (242)
T ss_pred             ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeee
Confidence            34457899999987443     1234666799999999999999753      3599999987643

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=3.6e-09  Score=110.29  Aligned_cols=51  Identities=35%  Similarity=0.873  Sum_probs=45.0

Q ss_pred             ccCcccccccccccCCc--eeecCCCCccccHHHHHHHHhcCCCCCcccCCCCC
Q 019053          123 SIYGCVVCLNEFQEQDM--LRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISG  174 (347)
Q Consensus       123 ~~~~C~ICl~~~~~~~~--~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~  174 (347)
                      ....|+||+|++..+..  ...|| |+|+||..|+..|++..++||.||..+..
T Consensus       290 ~~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er~qtCP~CR~~~~~  342 (543)
T KOG0802|consen  290 SDELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFERQQTCPTCRTVLYD  342 (543)
T ss_pred             cCCeeeeechhhccccccccceee-cccchHHHHHHHHHHHhCcCCcchhhhhc
Confidence            35789999999998765  77888 99999999999999999999999995543

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=1.6e-08  Score=89.98  Aligned_cols=51  Identities=31%  Similarity=0.737  Sum_probs=42.5

Q ss_pred             CccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCC
Q 019053          122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISG  174 (347)
Q Consensus       122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~  174 (347)
                      .....|+|||+.+.+...+  ..+|||+||..||+.-++....||+|+..|..
T Consensus       129 ~~~~~CPiCl~~~sek~~v--sTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~  179 (187)
T KOG0320|consen  129 EGTYKCPICLDSVSEKVPV--STKCGHVFCSQCIKDALKNTNKCPTCRKKITH  179 (187)
T ss_pred             ccccCCCceecchhhcccc--ccccchhHHHHHHHHHHHhCCCCCCcccccch
Confidence            3347899999999886443  23599999999999999999999999987764

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.62  E-value=2.5e-08  Score=69.59  Aligned_cols=44  Identities=27%  Similarity=0.818  Sum_probs=38.2

Q ss_pred             cccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccC
Q 019053          126 GCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRT  170 (347)
Q Consensus       126 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~  170 (347)
                      .|.||++.|.......+++ |||+|+..|+..+......||+||+
T Consensus         1 ~C~~C~~~~~~~~~~~l~~-CgH~~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTS-CGHIFCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcc-cCCHHHHHHHHhhcCCCCCCcCCCC
Confidence            4999999996666788887 9999999999999866678999985

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=98.61  E-value=2e-08  Score=78.02  Aligned_cols=51  Identities=35%  Similarity=0.645  Sum_probs=38.8

Q ss_pred             Ccccccccccc-----------cCC-ceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053          125 YGCVVCLNEFQ-----------EQD-MLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT  175 (347)
Q Consensus       125 ~~C~ICl~~~~-----------~~~-~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~  175 (347)
                      +.|+||...|.           .++ -....-.|+|.||.+||..||.++..||+||+.....
T Consensus        21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~   83 (88)
T COG5194          21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVLA   83 (88)
T ss_pred             chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEEe
Confidence            56888777664           233 2333446999999999999999999999999887543

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.59  E-value=3e-08  Score=67.61  Aligned_cols=39  Identities=44%  Similarity=1.227  Sum_probs=33.1

Q ss_pred             ccccccccccCCceeecCCCCccccHHHHHHHHh--cCCCCCcc
Q 019053          127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQ--SNANCPLC  168 (347)
Q Consensus       127 C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~--~~~tCPlC  168 (347)
                      |+||++.+....  .+++ |+|.|+..||..|++  ....||+|
T Consensus         1 C~iC~~~~~~~~--~~~~-C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPV--ILLP-CGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEE--EETT-TSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCC--EEec-CCCcchHHHHHHHHHhcCCccCCcC
Confidence            899999988753  4676 999999999999998  45569998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>smart00184 RING Ring finger

Probab=98.58  E-value=4.4e-08  Score=64.23  Aligned_cols=38  Identities=47%  Similarity=1.192  Sum_probs=32.3

Q ss_pred             ccccccccccCCceeecCCCCccccHHHHHHHHh-cCCCCCcc
Q 019053          127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQ-SNANCPLC  168 (347)
Q Consensus       127 C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~-~~~tCPlC  168 (347)
                      |+||++..   .....++ |+|.||..|++.|++ .+..||+|
T Consensus         1 C~iC~~~~---~~~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEEL---KDPVVLP-CGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCC---CCcEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence            78998883   3477787 999999999999998 56679988

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.50  E-value=9e-08  Score=66.31  Aligned_cols=38  Identities=34%  Similarity=0.952  Sum_probs=29.4

Q ss_pred             ccccccccccCCceeecCCCCccccHHHHHHHHhcC----CCCCcc
Q 019053          127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSN----ANCPLC  168 (347)
Q Consensus       127 C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~----~tCPlC  168 (347)
                      |+||++.|.+   ...|+ |||.|+..||..|.+..    ..||.|
T Consensus         1 CpiC~~~~~~---Pv~l~-CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKD---PVSLP-CGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SS---EEE-S-SSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCC---ccccC-CcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            8999999998   67787 99999999999998653    359988

>smart00504 Ubox Modified RING finger domain

Probab=98.49  E-value=1.1e-07  Score=70.33  Aligned_cols=47  Identities=19%  Similarity=0.527  Sum_probs=40.5

Q ss_pred             CcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053          125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT  175 (347)
Q Consensus       125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~  175 (347)
                      ..|+||++.+.+.   .+++ |||+|+..||..|++.+.+||+|+..+...
T Consensus         2 ~~Cpi~~~~~~~P---v~~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~   48 (63)
T smart00504        2 FLCPISLEVMKDP---VILP-SGQTYERRAIEKWLLSHGTDPVTGQPLTHE   48 (63)
T ss_pred             cCCcCCCCcCCCC---EECC-CCCEEeHHHHHHHHHHCCCCCCCcCCCChh
Confidence            3599999998873   5677 999999999999999889999999887543

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.36  E-value=2.3e-07  Score=92.87  Aligned_cols=49  Identities=31%  Similarity=0.663  Sum_probs=42.1

Q ss_pred             ccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053          123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT  175 (347)
Q Consensus       123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~  175 (347)
                      ....|+||++.|..   ..+++ |+|.||..||..|+.....||+||..+...
T Consensus        25 ~~l~C~IC~d~~~~---Pvitp-CgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~   73 (397)
T TIGR00599        25 TSLRCHICKDFFDV---PVLTS-CSHTFCSLCIRRCLSNQPKCPLCRAEDQES   73 (397)
T ss_pred             cccCCCcCchhhhC---ccCCC-CCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence            45689999999976   34677 999999999999999888899999988754

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=8.5e-08  Score=73.98  Aligned_cols=49  Identities=37%  Similarity=0.811  Sum_probs=37.4

Q ss_pred             Cccccccccccc---------CCceeecCCCCccccHHHHHHHHhcC---CCCCcccCCCC
Q 019053          125 YGCVVCLNEFQE---------QDMLRVLPNCSHAFHLDCIDIWLQSN---ANCPLCRTSIS  173 (347)
Q Consensus       125 ~~C~ICl~~~~~---------~~~~~~lp~C~H~FH~~CI~~WL~~~---~tCPlCR~~i~  173 (347)
                      +.|.||.-.|..         ++-..++-.|.|.||..||.+|+...   ..||+||+...
T Consensus        21 e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~   81 (84)
T KOG1493|consen   21 ETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ   81 (84)
T ss_pred             CccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence            479999999863         22233444699999999999999754   44999998764

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=2.4e-07  Score=87.21  Aligned_cols=53  Identities=28%  Similarity=0.602  Sum_probs=43.4

Q ss_pred             CccCcccccccccccCC-------ceeecCCCCccccHHHHHHHH--hcCCCCCcccCCCCCC
Q 019053          122 MSIYGCVVCLNEFQEQD-------MLRVLPNCSHAFHLDCIDIWL--QSNANCPLCRTSISGT  175 (347)
Q Consensus       122 ~~~~~C~ICl~~~~~~~-------~~~~lp~C~H~FH~~CI~~WL--~~~~tCPlCR~~i~~~  175 (347)
                      .++..|+||-..+....       ++-.|. |+|+||..||.-|-  ..+++||.|+..++..
T Consensus       222 l~d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKekVdl~  283 (328)
T KOG1734|consen  222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK  283 (328)
T ss_pred             CCcchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence            44578999988886654       567787 99999999999994  5578999999888754

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=98.26  E-value=1.6e-07  Score=100.25  Aligned_cols=54  Identities=30%  Similarity=0.728  Sum_probs=41.2

Q ss_pred             CCCccCcccccccccccCC---ceeecCCCCccccHHHHHHHHhc--CCCCCcccCCCC
Q 019053          120 EDMSIYGCVVCLNEFQEQD---MLRVLPNCSHAFHLDCIDIWLQS--NANCPLCRTSIS  173 (347)
Q Consensus       120 ~~~~~~~C~ICl~~~~~~~---~~~~lp~C~H~FH~~CI~~WL~~--~~tCPlCR~~i~  173 (347)
                      .-.+.++|+||...+..-+   .-...++|.|-||..|+-+|+.+  +++||+||..+.
T Consensus      1465 ~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1465 KFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             hcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            3445689999998876322   12344579999999999999976  567999998775

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.19  E-value=6e-07  Score=90.43  Aligned_cols=50  Identities=28%  Similarity=0.838  Sum_probs=39.4

Q ss_pred             cCcccccccccccCC--------------ceeecCCCCccccHHHHHHHHhcCC-CCCcccCCCCC
Q 019053          124 IYGCVVCLNEFQEQD--------------MLRVLPNCSHAFHLDCIDIWLQSNA-NCPLCRTSISG  174 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~--------------~~~~lp~C~H~FH~~CI~~WL~~~~-tCPlCR~~i~~  174 (347)
                      ..+|+|||.++.-..              .-.++| |.|+||..|+..|+..-+ .||+||.++.+
T Consensus       571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tP-C~HifH~~CL~~WMd~ykl~CPvCR~pLPp  635 (636)
T KOG0828|consen  571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTP-CHHIFHRQCLLQWMDTYKLICPVCRCPLPP  635 (636)
T ss_pred             cccceEeccccceeeccCcchhhhhhhhccccccc-hHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence            468999999875311              133567 999999999999999655 79999998864

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=98.18  E-value=1.2e-06  Score=62.64  Aligned_cols=42  Identities=24%  Similarity=0.788  Sum_probs=32.9

Q ss_pred             cccccccccccCCceeecCCCC-----ccccHHHHHHHHhcC--CCCCccc
Q 019053          126 GCVVCLNEFQEQDMLRVLPNCS-----HAFHLDCIDIWLQSN--ANCPLCR  169 (347)
Q Consensus       126 ~C~ICl~~~~~~~~~~~lp~C~-----H~FH~~CI~~WL~~~--~tCPlCR  169 (347)
                      .|-||++ ..+++...+.| |.     |.+|..|+..|+...  .+||+|+
T Consensus         1 ~CrIC~~-~~~~~~~l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHD-EGDEGDPLVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCC-CCCCCCeeEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            3899999 44445556788 85     899999999999654  4799995

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.17  E-value=8.3e-07  Score=83.48  Aligned_cols=50  Identities=36%  Similarity=0.860  Sum_probs=41.1

Q ss_pred             cCcccccccccccCCceeecCCCCccccHHHHHH-HHhcCCC-CCcccCCCCCCCC
Q 019053          124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDI-WLQSNAN-CPLCRTSISGTTR  177 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~-WL~~~~t-CPlCR~~i~~~~~  177 (347)
                      +..|+||++....   ...++ |||+||..||.. |-..+.- ||+||+.+.+.+.
T Consensus       215 d~kC~lC~e~~~~---ps~t~-CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v  266 (271)
T COG5574         215 DYKCFLCLEEPEV---PSCTP-CGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV  266 (271)
T ss_pred             ccceeeeecccCC---ccccc-ccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence            5679999998766   56677 999999999999 9766555 9999999876653

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.07  E-value=1.9e-06  Score=70.20  Aligned_cols=50  Identities=30%  Similarity=0.743  Sum_probs=38.7

Q ss_pred             cCcccccccccc-------------cCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCC
Q 019053          124 IYGCVVCLNEFQ-------------EQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSIS  173 (347)
Q Consensus       124 ~~~C~ICl~~~~-------------~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~  173 (347)
                      .+.|+||..-+-             .++-....-.|+|.||..||..||++++.||||-++..
T Consensus        46 vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~  108 (114)
T KOG2930|consen   46 VDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWV  108 (114)
T ss_pred             echhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCccee
Confidence            467999987652             22334444469999999999999999999999977654

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=97.97  E-value=5.6e-06  Score=57.72  Aligned_cols=34  Identities=32%  Similarity=0.807  Sum_probs=21.8

Q ss_pred             ccccccccccCC-ceeecCCCCccccHHHHHHHHhcC
Q 019053          127 CVVCLNEFQEQD-MLRVLPNCSHAFHLDCIDIWLQSN  162 (347)
Q Consensus       127 C~ICl~~~~~~~-~~~~lp~C~H~FH~~CI~~WL~~~  162 (347)
                      |+||++ |.+.+ ...+|+ |||+|+.+||+.|++..
T Consensus         1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~   35 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKKS   35 (43)
T ss_dssp             -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH-
T ss_pred             CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhcC
Confidence            899999 75544 568898 99999999999999854

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.96  E-value=4.6e-06  Score=81.52  Aligned_cols=48  Identities=35%  Similarity=0.751  Sum_probs=42.3

Q ss_pred             cCcccccccccccCCceeecCCCCcc-ccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053          124 IYGCVVCLNEFQEQDMLRVLPNCSHA-FHLDCIDIWLQSNANCPLCRTSISGT  175 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~CI~~WL~~~~tCPlCR~~i~~~  175 (347)
                      ..+|.|||.+-.+   +.+|| |.|. .|..|.+..--.++.||+||++|...
T Consensus       290 gkeCVIClse~rd---t~vLP-CRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~l  338 (349)
T KOG4265|consen  290 GKECVICLSESRD---TVVLP-CRHLCLCSGCAKSLRYQTNNCPICRQPIEEL  338 (349)
T ss_pred             CCeeEEEecCCcc---eEEec-chhhehhHhHHHHHHHhhcCCCccccchHhh
Confidence            5789999999776   78999 9998 99999999877788999999998754

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=97.90  E-value=6.5e-06  Score=63.52  Aligned_cols=48  Identities=21%  Similarity=0.515  Sum_probs=37.6

Q ss_pred             cCcccccccccccCCceeecCCCCccccHHHHHHHHhc-CCCCCcccCCCCCC
Q 019053          124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS-NANCPLCRTSISGT  175 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-~~tCPlCR~~i~~~  175 (347)
                      ...|+||.+-|.+   ..++| |||.|...||..||.. +.+||+|+.++...
T Consensus         4 ~f~CpIt~~lM~d---PVi~~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~   52 (73)
T PF04564_consen    4 EFLCPITGELMRD---PVILP-SGHTYERSAIERWLEQNGGTDPFTRQPLSES   52 (73)
T ss_dssp             GGB-TTTSSB-SS---EEEET-TSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred             ccCCcCcCcHhhC---ceeCC-cCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence            4679999999988   56788 9999999999999998 78899999888754

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.87  E-value=6.4e-06  Score=83.75  Aligned_cols=49  Identities=27%  Similarity=0.558  Sum_probs=38.3

Q ss_pred             cCcccccccccccCCceeecCCCCccccHHHHHHHHhc-----CCCCCcccCCCCCCC
Q 019053          124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS-----NANCPLCRTSISGTT  176 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-----~~tCPlCR~~i~~~~  176 (347)
                      ...|+|||+....   ...+. |||+||..||-.++..     ...||+||..|....
T Consensus       186 ~~~CPICL~~~~~---p~~t~-CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kd  239 (513)
T KOG2164|consen  186 DMQCPICLEPPSV---PVRTN-CGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKD  239 (513)
T ss_pred             CCcCCcccCCCCc---ccccc-cCceeeHHHHHHHHhhhcccCCccCCchhhhccccc
Confidence            5679999998665   33444 9999999999996643     356999999998743

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=97.86  E-value=5.4e-06  Score=80.44  Aligned_cols=49  Identities=29%  Similarity=0.750  Sum_probs=43.4

Q ss_pred             ccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053          123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT  175 (347)
Q Consensus       123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~  175 (347)
                      +.-.|.||.+-|..   ..++| |+|.||.-||..+|..+..||.|+..+.+.
T Consensus        22 ~lLRC~IC~eyf~i---p~itp-CsHtfCSlCIR~~L~~~p~CP~C~~~~~Es   70 (442)
T KOG0287|consen   22 DLLRCGICFEYFNI---PMITP-CSHTFCSLCIRKFLSYKPQCPTCCVTVTES   70 (442)
T ss_pred             HHHHHhHHHHHhcC---ceecc-ccchHHHHHHHHHhccCCCCCceecccchh
Confidence            34679999999887   56788 999999999999999999999999988765

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=97.84  E-value=1.2e-05  Score=77.92  Aligned_cols=52  Identities=25%  Similarity=0.689  Sum_probs=38.4

Q ss_pred             cCcccccccc-cccCCc-eeecCCCCccccHHHHHHHH-hcCCCCCcccCCCCCCC
Q 019053          124 IYGCVVCLNE-FQEQDM-LRVLPNCSHAFHLDCIDIWL-QSNANCPLCRTSISGTT  176 (347)
Q Consensus       124 ~~~C~ICl~~-~~~~~~-~~~lp~C~H~FH~~CI~~WL-~~~~tCPlCR~~i~~~~  176 (347)
                      ...|+||..+ |...+. +.+.+ |||.||..||+..+ .....||.|+..+....
T Consensus         3 ~~~CP~Ck~~~y~np~~kl~i~~-CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~   57 (309)
T TIGR00570         3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGSGSCPECDTPLRKNN   57 (309)
T ss_pred             CCCCCcCCCCCccCcccccccCC-CCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence            4579999996 334432 33334 99999999999955 44567999999887664

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.80  E-value=8.8e-06  Score=80.17  Aligned_cols=46  Identities=28%  Similarity=0.886  Sum_probs=35.4

Q ss_pred             CcccccccccccCCceeecCCCCccccHHHHHHHHhc---CCCCCcccC
Q 019053          125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS---NANCPLCRT  170 (347)
Q Consensus       125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~---~~tCPlCR~  170 (347)
                      ..|.||.+-+-....+.-+..|||+||..|+..|+..   +.+||+|+-
T Consensus         5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~i   53 (465)
T KOG0827|consen    5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQI   53 (465)
T ss_pred             ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceee
Confidence            4799995544444455555569999999999999986   357999993

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.80  E-value=8.1e-06  Score=75.38  Aligned_cols=44  Identities=34%  Similarity=0.856  Sum_probs=38.3

Q ss_pred             ccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccC
Q 019053          123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRT  170 (347)
Q Consensus       123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~  170 (347)
                      +...|+||++.|...   .++| |+|.||..||..|......||.||.
T Consensus        12 ~~~~C~iC~~~~~~p---~~l~-C~H~~c~~C~~~~~~~~~~Cp~cr~   55 (386)
T KOG2177|consen   12 EELTCPICLEYFREP---VLLP-CGHNFCRACLTRSWEGPLSCPVCRP   55 (386)
T ss_pred             ccccChhhHHHhhcC---cccc-ccchHhHHHHHHhcCCCcCCcccCC
Confidence            456899999999997   7788 9999999999999875566999993

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=97.78  E-value=4.7e-06  Score=63.99  Aligned_cols=49  Identities=33%  Similarity=0.822  Sum_probs=23.3

Q ss_pred             Ccccccccccc-cCCc-eeec--CCCCccccHHHHHHHHhc----C-------CCCCcccCCCC
Q 019053          125 YGCVVCLNEFQ-EQDM-LRVL--PNCSHAFHLDCIDIWLQS----N-------ANCPLCRTSIS  173 (347)
Q Consensus       125 ~~C~ICl~~~~-~~~~-~~~l--p~C~H~FH~~CI~~WL~~----~-------~tCPlCR~~i~  173 (347)
                      .+|.||++.+. .++. ..+-  +.|++.||..||..||..    +       -+||.|+.+|.
T Consensus         3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~   66 (70)
T PF11793_consen    3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS   66 (70)
T ss_dssp             -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred             CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence            57999999876 3322 2222  269999999999999863    1       13999998874

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=97.77  E-value=1.3e-05  Score=76.52  Aligned_cols=49  Identities=27%  Similarity=0.525  Sum_probs=40.9

Q ss_pred             CccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCC
Q 019053          122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISG  174 (347)
Q Consensus       122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~  174 (347)
                      .....|-||-+-|..   ...++ |||.||.-||...|..+..||+||.+.-.
T Consensus        23 Ds~lrC~IC~~~i~i---p~~Tt-CgHtFCslCIR~hL~~qp~CP~Cr~~~~e   71 (391)
T COG5432          23 DSMLRCRICDCRISI---PCETT-CGHTFCSLCIRRHLGTQPFCPVCREDPCE   71 (391)
T ss_pred             hhHHHhhhhhheeec---ceecc-cccchhHHHHHHHhcCCCCCccccccHHh
Confidence            344679999888876   34555 99999999999999999999999987543

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=97.73  E-value=1e-05  Score=80.95  Aligned_cols=47  Identities=32%  Similarity=0.872  Sum_probs=38.6

Q ss_pred             cCcccccccccccCC-ceeecCCCCccccHHHHHHHHhcCCCCCcccCCCC
Q 019053          124 IYGCVVCLNEFQEQD-MLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSIS  173 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~-~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~  173 (347)
                      ..+|+||||-+...- .++... |.|.||..|+..|-  ..+||+||.-..
T Consensus       175 LPTCpVCLERMD~s~~gi~t~~-c~Hsfh~~cl~~w~--~~scpvcR~~q~  222 (493)
T KOG0804|consen  175 LPTCPVCLERMDSSTTGILTIL-CNHSFHCSCLMKWW--DSSCPVCRYCQS  222 (493)
T ss_pred             CCCcchhHhhcCccccceeeee-cccccchHHHhhcc--cCcChhhhhhcC
Confidence            468999999997754 345555 99999999999994  578999998766

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.56  E-value=3.7e-05  Score=75.87  Aligned_cols=52  Identities=38%  Similarity=0.903  Sum_probs=40.4

Q ss_pred             ccCcccccccccccCC----ceeecCCCCccccHHHHHHHHh--c-----CCCCCcccCCCCC
Q 019053          123 SIYGCVVCLNEFQEQD----MLRVLPNCSHAFHLDCIDIWLQ--S-----NANCPLCRTSISG  174 (347)
Q Consensus       123 ~~~~C~ICl~~~~~~~----~~~~lp~C~H~FH~~CI~~WL~--~-----~~tCPlCR~~i~~  174 (347)
                      .+.+|.||++...+..    ...+||+|.|.||..||+.|-+  .     .+.||.||.....
T Consensus       160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~  222 (344)
T KOG1039|consen  160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF  222 (344)
T ss_pred             ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence            3578999999876643    1345678999999999999973  3     3679999987653

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=97.52  E-value=2.1e-05  Score=83.20  Aligned_cols=52  Identities=21%  Similarity=0.443  Sum_probs=43.9

Q ss_pred             cCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCCC
Q 019053          124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTT  176 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~~  176 (347)
                      ...|++|+..+.++......+ |+|+||..||+.|-..-.+||+||..+....
T Consensus       123 ~~~CP~Ci~s~~DqL~~~~k~-c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~  174 (1134)
T KOG0825|consen  123 ENQCPNCLKSCNDQLEESEKH-TAHYFCEECVGSWSRCAQTCPVDRGEFGEVK  174 (1134)
T ss_pred             hhhhhHHHHHHHHHhhccccc-cccccHHHHhhhhhhhcccCchhhhhhheee
Confidence            356999999888876666665 9999999999999999999999999776543

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.49  E-value=2.5e-05  Score=56.75  Aligned_cols=45  Identities=27%  Similarity=0.587  Sum_probs=34.4

Q ss_pred             CcccccccccccCCceeecCCCCcc-ccHHHHHH-HHhcCCCCCcccCCCC
Q 019053          125 YGCVVCLNEFQEQDMLRVLPNCSHA-FHLDCIDI-WLQSNANCPLCRTSIS  173 (347)
Q Consensus       125 ~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~CI~~-WL~~~~tCPlCR~~i~  173 (347)
                      .+|.||++.-.+.    +|..|||. .+.+|-.. |-..+..||+||++|.
T Consensus         8 dECTICye~pvds----VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~   54 (62)
T KOG4172|consen    8 DECTICYEHPVDS----VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK   54 (62)
T ss_pred             cceeeeccCcchH----HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence            6899998875442    33459998 89999554 5557899999999875

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.48  E-value=6.7e-05  Score=74.53  Aligned_cols=49  Identities=31%  Similarity=0.761  Sum_probs=37.3

Q ss_pred             cCcccccccccccC-CceeecCCCCccccHHHHHHHHhc--CCCCCcccCCC
Q 019053          124 IYGCVVCLNEFQEQ-DMLRVLPNCSHAFHLDCIDIWLQS--NANCPLCRTSI  172 (347)
Q Consensus       124 ~~~C~ICl~~~~~~-~~~~~lp~C~H~FH~~CI~~WL~~--~~tCPlCR~~i  172 (347)
                      ..+|+|||+.+... +...+.+.|||.|..+||+.||..  ...||.|...-
T Consensus         4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ka   55 (463)
T KOG1645|consen    4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKA   55 (463)
T ss_pred             cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChh
Confidence            46899999999854 444444469999999999999952  23499996644

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.26  E-value=5.6e-05  Score=73.87  Aligned_cols=51  Identities=29%  Similarity=0.629  Sum_probs=41.9

Q ss_pred             ccCcccccccccccCCceeecCCCCccccHHHHHHHHh-cCCCCCcccCCCCCCC
Q 019053          123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQ-SNANCPLCRTSISGTT  176 (347)
Q Consensus       123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~-~~~tCPlCR~~i~~~~  176 (347)
                      .+..|.|||+-++.   .+..+.|.|-||.+||..-+. .+++||-||+.+....
T Consensus        42 ~~v~c~icl~llk~---tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Skr   93 (381)
T KOG0311|consen   42 IQVICPICLSLLKK---TMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKR   93 (381)
T ss_pred             hhhccHHHHHHHHh---hcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccc
Confidence            35679999999887   455667999999999999876 4788999999887543

>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=97.22  E-value=0.00011  Score=70.54  Aligned_cols=52  Identities=33%  Similarity=0.740  Sum_probs=43.1

Q ss_pred             cCcccccccccccCCceeecCCCCccccHHHHHHHHh------------------c-----CCCCCcccCCCCCCC
Q 019053          124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQ------------------S-----NANCPLCRTSISGTT  176 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~------------------~-----~~tCPlCR~~i~~~~  176 (347)
                      ...|.|||.-|.+++...+++ |-|.||..|+..+|.                  .     ...||+||..|..+.
T Consensus       115 ~gqCvICLygfa~~~~ft~T~-C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~  189 (368)
T KOG4445|consen  115 NGQCVICLYGFASSPAFTVTA-CDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEE  189 (368)
T ss_pred             CCceEEEEEeecCCCceeeeh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccccc
Confidence            367999999999999999998 999999999987762                  1     125999999887553

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=97.14  E-value=9.3e-05  Score=55.70  Aligned_cols=45  Identities=29%  Similarity=0.710  Sum_probs=22.7

Q ss_pred             CcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCC
Q 019053          125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISG  174 (347)
Q Consensus       125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~  174 (347)
                      -.|++|.+-+.+.   ..+..|.|+|+..||..-+.  .-||+|+.+.-.
T Consensus         8 LrCs~C~~~l~~p---v~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~   52 (65)
T PF14835_consen    8 LRCSICFDILKEP---VCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWI   52 (65)
T ss_dssp             TS-SSS-S--SS----B---SSS--B-TTTGGGGTT--TB-SSS--B-S-
T ss_pred             cCCcHHHHHhcCC---ceeccCccHHHHHHhHHhcC--CCCCCcCChHHH
Confidence            4599999988763   33445999999999988654  349999887643

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=97.14  E-value=0.00033  Score=69.57  Aligned_cols=51  Identities=29%  Similarity=0.810  Sum_probs=41.5

Q ss_pred             cCcccccccccccCCceeecCCCCccccHHHHHHHHhc--CCCCCcccCCCCCCCCC
Q 019053          124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS--NANCPLCRTSISGTTRY  178 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~--~~tCPlCR~~i~~~~~~  178 (347)
                      ..-|-||-+.   +..+++-| |||..|..|+..|-..  .++||.||..|.....+
T Consensus       369 FeLCKICaen---dKdvkIEP-CGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~v  421 (563)
T KOG1785|consen  369 FELCKICAEN---DKDVKIEP-CGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEPV  421 (563)
T ss_pred             HHHHHHhhcc---CCCccccc-ccchHHHHHHHhhcccCCCCCCCceeeEeccccce
Confidence            3569999765   33488888 9999999999999744  57899999999876544

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.00  E-value=0.0003  Score=67.58  Aligned_cols=48  Identities=29%  Similarity=0.532  Sum_probs=38.4

Q ss_pred             cCcccccccccccCCceeecCCCCccccHHHHHHHHhc-CCCCCcccCCCCCC
Q 019053          124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS-NANCPLCRTSISGT  175 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-~~tCPlCR~~i~~~  175 (347)
                      ..+|+||+....-   ...|+ |+|.||.-||+--.+. ..+|++||.+|+..
T Consensus         7 ~~eC~IC~nt~n~---Pv~l~-C~HkFCyiCiKGsy~ndk~~CavCR~pids~   55 (324)
T KOG0824|consen    7 KKECLICYNTGNC---PVNLY-CFHKFCYICIKGSYKNDKKTCAVCRFPIDST   55 (324)
T ss_pred             CCcceeeeccCCc---Ccccc-ccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence            3579999887554   45676 9999999999986554 46699999999865

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.86  E-value=0.0006  Score=68.65  Aligned_cols=52  Identities=37%  Similarity=0.792  Sum_probs=43.3

Q ss_pred             CCCCccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCC
Q 019053          119 GEDMSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISG  174 (347)
Q Consensus       119 ~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~  174 (347)
                      ....++.+|.||+..+..   ...+| |||.||..||+.-+....-||+||..+..
T Consensus        79 ~~~~sef~c~vc~~~l~~---pv~tp-cghs~c~~Cl~r~ld~~~~cp~Cr~~l~e  130 (398)
T KOG4159|consen   79 EEIRSEFECCVCSRALYP---PVVTP-CGHSFCLECLDRSLDQETECPLCRDELVE  130 (398)
T ss_pred             ccccchhhhhhhHhhcCC---Ccccc-ccccccHHHHHHHhccCCCCccccccccc
Confidence            334567899999888877   56678 99999999999977777779999999875

>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.83  E-value=0.00037  Score=61.49  Aligned_cols=41  Identities=24%  Similarity=0.609  Sum_probs=33.9

Q ss_pred             CceeeeccCCCCccCcccccccccccCCceeecCCCCccccH
Q 019053          111 PTFQFKREGEDMSIYGCVVCLNEFQEQDMLRVLPNCSHAFHL  152 (347)
Q Consensus       111 p~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~  152 (347)
                      |.+.|+..-...+.-+|.||||+++.++.+..|| |-.+||+
T Consensus       164 PrlsYNdDVL~ddkGECvICLEdL~~GdtIARLP-CLCIYHK  204 (205)
T KOG0801|consen  164 PRLSYNDDVLKDDKGECVICLEDLEAGDTIARLP-CLCIYHK  204 (205)
T ss_pred             cccccccchhcccCCcEEEEhhhccCCCceeccc-eEEEeec
Confidence            5566666544455678999999999999999999 9999996

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=96.72  E-value=0.00058  Score=72.64  Aligned_cols=49  Identities=22%  Similarity=0.766  Sum_probs=37.9

Q ss_pred             cCcccccccccccCCceeecCCCCccccHHHHHHHHhc-CCCCCcccCCCCCCC
Q 019053          124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS-NANCPLCRTSISGTT  176 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-~~tCPlCR~~i~~~~  176 (347)
                      .-.|++|-.-.++   + ++++|+|+||..||..-+.. +..||.|-+.+....
T Consensus       643 ~LkCs~Cn~R~Kd---~-vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganD  692 (698)
T KOG0978|consen  643 LLKCSVCNTRWKD---A-VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAND  692 (698)
T ss_pred             ceeCCCccCchhh---H-HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Confidence            4579999866555   3 33469999999999999976 567999988876544

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.58  E-value=0.0012  Score=65.57  Aligned_cols=48  Identities=40%  Similarity=0.817  Sum_probs=38.9

Q ss_pred             CcccccccccccCC-ceeecCCCCccccHHHHHHHHhcC--CCCCcccCCCC
Q 019053          125 YGCVVCLNEFQEQD-MLRVLPNCSHAFHLDCIDIWLQSN--ANCPLCRTSIS  173 (347)
Q Consensus       125 ~~C~ICl~~~~~~~-~~~~lp~C~H~FH~~CI~~WL~~~--~tCPlCR~~i~  173 (347)
                      --|..|-+.+-.++ .+.-|| |.|+||..|+...|..+  .+||.||+-..
T Consensus       366 L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~CrklrS  416 (518)
T KOG1941|consen  366 LYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCRKLRS  416 (518)
T ss_pred             hhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHHHHHh
Confidence            45999988886544 577888 99999999999999776  46999995444

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=96.52  E-value=0.00098  Score=57.28  Aligned_cols=35  Identities=20%  Similarity=0.535  Sum_probs=29.5

Q ss_pred             cCcccccccccccCCceeecCCCC------ccccHHHHHHHH
Q 019053          124 IYGCVVCLNEFQEQDMLRVLPNCS------HAFHLDCIDIWL  159 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~~~~~lp~C~------H~FH~~CI~~WL  159 (347)
                      ..+|+||++.+.+++.+..++ |+      |.||.+|+..|-
T Consensus        26 ~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~   66 (134)
T PF05883_consen   26 TVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWR   66 (134)
T ss_pred             CeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHH
Confidence            367999999999966677776 76      899999999994

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.51  E-value=0.0019  Score=59.95  Aligned_cols=50  Identities=26%  Similarity=0.635  Sum_probs=42.5

Q ss_pred             CcccccccccccCCceeecCCCCccccHHHHHHHHhc--------CCCCCcccCCCCCCC
Q 019053          125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS--------NANCPLCRTSISGTT  176 (347)
Q Consensus       125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~--------~~tCPlCR~~i~~~~  176 (347)
                      ..|..|-..+..+|.++..  |-|.||.+|+++|-..        ...||.|-.+|++..
T Consensus        51 pNC~LC~t~La~gdt~RLv--CyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~  108 (299)
T KOG3970|consen   51 PNCRLCNTPLASGDTTRLV--CYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPI  108 (299)
T ss_pred             CCCceeCCccccCcceeeh--hhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCc
Confidence            4699999999999988875  9999999999999643        235999999998764

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=96.43  E-value=0.0065  Score=59.19  Aligned_cols=45  Identities=24%  Similarity=0.459  Sum_probs=35.8

Q ss_pred             CccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCccc
Q 019053          122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCR  169 (347)
Q Consensus       122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR  169 (347)
                      .+...|+||+....++-.+-   .-|-+||..||-..+.++..||+=-
T Consensus       298 ~~~~~CpvClk~r~Nptvl~---vSGyVfCY~Ci~~Yv~~~~~CPVT~  342 (357)
T KOG0826|consen  298 PDREVCPVCLKKRQNPTVLE---VSGYVFCYPCIFSYVVNYGHCPVTG  342 (357)
T ss_pred             CccccChhHHhccCCCceEE---ecceEEeHHHHHHHHHhcCCCCccC
Confidence            34578999999877753332   2699999999999999999999753

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=96.40  E-value=0.0017  Score=65.55  Aligned_cols=53  Identities=23%  Similarity=0.636  Sum_probs=43.6

Q ss_pred             cCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCCCCCC
Q 019053          124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTTRYP  179 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~~~~~  179 (347)
                      ...|++|...+.+.-..  + .|||.||..|+..|+..+..||.|+..+.....++
T Consensus        21 ~l~C~~C~~vl~~p~~~--~-~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~~   73 (391)
T KOG0297|consen   21 NLLCPICMSVLRDPVQT--T-TCGHRFCAGCLLESLSNHQKCPVCRQELTQAEELP   73 (391)
T ss_pred             cccCccccccccCCCCC--C-CCCCcccccccchhhccCcCCcccccccchhhccC
Confidence            46799999998875322  3 49999999999999999999999999887665443

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=96.34  E-value=0.0025  Score=71.47  Aligned_cols=66  Identities=26%  Similarity=0.589  Sum_probs=47.8

Q ss_pred             hcCCceeeeccCCC-CccCcccccccccccCCceeecCCCCccccHHHHHHHHhcC----------CCCCcccCCCCC
Q 019053          108 RDIPTFQFKREGED-MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSN----------ANCPLCRTSISG  174 (347)
Q Consensus       108 ~~lp~~~~~~~~~~-~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~----------~tCPlCR~~i~~  174 (347)
                      .-||-+..++.... ..++.|.||+.+--.......|. |+|+||..|...-|+..          -+||+|+.+|.-
T Consensus      3469 ~CLPCl~Cdks~tkQD~DDmCmICFTE~L~AAP~IqL~-C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3469 HCLPCLHCDKSATKQDADDMCMICFTEALSAAPAIQLD-CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred             hcccccccChhhhhcccCceEEEEehhhhCCCcceecC-CccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence            34666665554322 33578999988876666777886 99999999998766542          259999998864

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=96.27  E-value=0.0037  Score=46.12  Aligned_cols=41  Identities=27%  Similarity=0.700  Sum_probs=27.4

Q ss_pred             cCcccccccccccCCceeecCCCCccccHHHHHHHHhcC--CCCCc
Q 019053          124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSN--ANCPL  167 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~--~tCPl  167 (347)
                      ...|+|.+..|++.  ++-. .|+|+|-.+.|..||+.+  ..||+
T Consensus        11 ~~~CPiT~~~~~~P--V~s~-~C~H~fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen   11 SLKCPITLQPFEDP--VKSK-KCGHTFEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             -SB-TTTSSB-SSE--EEES-SS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred             ccCCCCcCChhhCC--cCcC-CCCCeecHHHHHHHHHhcCCCCCCC
Confidence            36799999999874  4444 499999999999999443  44998

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=96.14  E-value=0.0032  Score=44.62  Aligned_cols=40  Identities=30%  Similarity=0.949  Sum_probs=27.2

Q ss_pred             ccccccccccCCceeecCCCC-----ccccHHHHHHHHhc--CCCCCcc
Q 019053          127 CVVCLNEFQEQDMLRVLPNCS-----HAFHLDCIDIWLQS--NANCPLC  168 (347)
Q Consensus       127 C~ICl~~~~~~~~~~~lp~C~-----H~FH~~CI~~WL~~--~~tCPlC  168 (347)
                      |-||+++-.+++ ..+.| |+     -..|.+|+..|+..  +.+|++|
T Consensus         1 CrIC~~~~~~~~-~li~p-C~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C   47 (47)
T PF12906_consen    1 CRICLEGEEEDE-PLISP-CRCKGSMKYVHRSCLERWIRESGNRKCEIC   47 (47)
T ss_dssp             ETTTTEE-SSSS--EE-S-SS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred             CeEeCCcCCCCC-ceecc-cccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence            679999877766 34566 54     37899999999974  4569988

>PHA02862 5L protein; Provisional

Probab=95.37  E-value=0.013  Score=50.94  Aligned_cols=47  Identities=23%  Similarity=0.660  Sum_probs=34.9

Q ss_pred             CcccccccccccCCceeecCCCC-----ccccHHHHHHHHhc--CCCCCcccCCCCCCC
Q 019053          125 YGCVVCLNEFQEQDMLRVLPNCS-----HAFHLDCIDIWLQS--NANCPLCRTSISGTT  176 (347)
Q Consensus       125 ~~C~ICl~~~~~~~~~~~lp~C~-----H~FH~~CI~~WL~~--~~tCPlCR~~i~~~~  176 (347)
                      ..|=||+++-+++  .  -| |.     ...|.+|+..|+..  +.+|++|+.+.....
T Consensus         3 diCWIC~~~~~e~--~--~P-C~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik~   56 (156)
T PHA02862          3 DICWICNDVCDER--N--NF-CGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIKK   56 (156)
T ss_pred             CEEEEecCcCCCC--c--cc-ccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEEE
Confidence            4699999985433  2  44 54     46999999999965  356999999876544

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=95.31  E-value=0.008  Score=54.86  Aligned_cols=46  Identities=22%  Similarity=0.530  Sum_probs=38.3

Q ss_pred             cCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCC
Q 019053          124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSIS  173 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~  173 (347)
                      ...|.||-.+|+..   .++. |||.||..|...-++....|-+|-....
T Consensus       196 PF~C~iCKkdy~sp---vvt~-CGH~FC~~Cai~~y~kg~~C~~Cgk~t~  241 (259)
T COG5152         196 PFLCGICKKDYESP---VVTE-CGHSFCSLCAIRKYQKGDECGVCGKATY  241 (259)
T ss_pred             ceeehhchhhccch---hhhh-cchhHHHHHHHHHhccCCcceecchhhc
Confidence            46799999999883   4554 9999999999998888899999966543

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.31  E-value=0.0091  Score=58.89  Aligned_cols=44  Identities=34%  Similarity=0.640  Sum_probs=32.8

Q ss_pred             cCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCC
Q 019053          124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISG  174 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~  174 (347)
                      ...|.||+++.++   ...+| |||+-+  |..--. ...+||+||..|..
T Consensus       305 p~lcVVcl~e~~~---~~fvp-cGh~cc--ct~cs~-~l~~CPvCR~rI~~  348 (355)
T KOG1571|consen  305 PDLCVVCLDEPKS---AVFVP-CGHVCC--CTLCSK-HLPQCPVCRQRIRL  348 (355)
T ss_pred             CCceEEecCCccc---eeeec-CCcEEE--chHHHh-hCCCCchhHHHHHH
Confidence            4679999999877   77888 999955  554432 23459999998754

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=95.19  E-value=0.0059  Score=59.53  Aligned_cols=51  Identities=25%  Similarity=0.569  Sum_probs=41.3

Q ss_pred             CccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053          122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT  175 (347)
Q Consensus       122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~  175 (347)
                      +...+|.+|-.-|.+...+  . .|-|.||..||-..|....+||.|...|-..
T Consensus        13 n~~itC~LC~GYliDATTI--~-eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t   63 (331)
T KOG2660|consen   13 NPHITCRLCGGYLIDATTI--T-ECLHTFCKSCIVKYLEESKYCPTCDIVIHKT   63 (331)
T ss_pred             ccceehhhccceeecchhH--H-HHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence            4457899998877764333  3 4999999999999999999999998877654

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=95.19  E-value=0.0098  Score=61.23  Aligned_cols=52  Identities=27%  Similarity=0.608  Sum_probs=39.3

Q ss_pred             CCCccCcccccccccccCCceeecCCCCccccHHHHHHHHhc-----CCCCCcccCCCCCC
Q 019053          120 EDMSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS-----NANCPLCRTSISGT  175 (347)
Q Consensus       120 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-----~~tCPlCR~~i~~~  175 (347)
                      +..+..+|.+|-+.-++   ..... |.|.||..||..+...     +-+||.|...+.-.
T Consensus       532 enk~~~~C~lc~d~aed---~i~s~-ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD  588 (791)
T KOG1002|consen  532 ENKGEVECGLCHDPAED---YIESS-CHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID  588 (791)
T ss_pred             cccCceeecccCChhhh---hHhhh-hhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence            44556789999887555   44554 9999999999988753     46799998777644

>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]

Probab=95.18  E-value=0.01  Score=64.05  Aligned_cols=52  Identities=29%  Similarity=0.777  Sum_probs=39.1

Q ss_pred             CccCcccccccccccCCceeecCCCCccccHHHHHHHHhcC-------CCCCcccCCCC
Q 019053          122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSN-------ANCPLCRTSIS  173 (347)
Q Consensus       122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~-------~tCPlCR~~i~  173 (347)
                      .+..+|.||.+.+.....+---..|-|+||..||..|-.+.       -.||-|.....
T Consensus       189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~  247 (950)
T KOG1952|consen  189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSK  247 (950)
T ss_pred             cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhc
Confidence            44589999999998776554444588999999999997541       13999984433

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.01  E-value=0.011  Score=59.09  Aligned_cols=47  Identities=30%  Similarity=0.785  Sum_probs=37.8

Q ss_pred             ccCcccccccccccCCceeecCCCCccccHHHHHHHHhcC--------CCCCcccC
Q 019053          123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSN--------ANCPLCRT  170 (347)
Q Consensus       123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~--------~tCPlCR~  170 (347)
                      ....|.||+++..-......+| |+|+||..|+..++..+        -.||-|.-
T Consensus       183 slf~C~ICf~e~~G~~c~~~lp-C~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C  237 (445)
T KOG1814|consen  183 SLFDCCICFEEQMGQHCFKFLP-CSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC  237 (445)
T ss_pred             hcccceeeehhhcCcceeeecc-cchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence            4578999999977668888999 99999999999998542        24877644

>PHA03096 p28-like protein; Provisional

Probab=94.96  E-value=0.012  Score=56.87  Aligned_cols=46  Identities=26%  Similarity=0.616  Sum_probs=33.6

Q ss_pred             CcccccccccccCC----ceeecCCCCccccHHHHHHHHhcC---CCCCcccC
Q 019053          125 YGCVVCLNEFQEQD----MLRVLPNCSHAFHLDCIDIWLQSN---ANCPLCRT  170 (347)
Q Consensus       125 ~~C~ICl~~~~~~~----~~~~lp~C~H~FH~~CI~~WL~~~---~tCPlCR~  170 (347)
                      -+|.||++......    .-..|+.|.|.|+..||..|-...   .+||.||.
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~  231 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR  231 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence            57999999987643    234677899999999999997542   33555533

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=94.71  E-value=0.031  Score=49.45  Aligned_cols=49  Identities=20%  Similarity=0.634  Sum_probs=35.0

Q ss_pred             ccCcccccccccccCCceeecC-CCCc---cccHHHHHHHHhcC--CCCCcccCCCCCC
Q 019053          123 SIYGCVVCLNEFQEQDMLRVLP-NCSH---AFHLDCIDIWLQSN--ANCPLCRTSISGT  175 (347)
Q Consensus       123 ~~~~C~ICl~~~~~~~~~~~lp-~C~H---~FH~~CI~~WL~~~--~tCPlCR~~i~~~  175 (347)
                      ....|=||.++..  +..  -| .|..   ..|.+|+..|+...  .+|++|+++....
T Consensus         7 ~~~~CRIC~~~~~--~~~--~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~   61 (162)
T PHA02825          7 MDKCCWICKDEYD--VVT--NYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK   61 (162)
T ss_pred             CCCeeEecCCCCC--Ccc--CCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence            3568999998853  222  35 2444   57999999999753  4599999877644

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=94.63  E-value=0.014  Score=47.12  Aligned_cols=31  Identities=32%  Similarity=0.797  Sum_probs=25.6

Q ss_pred             cCcccccccccccCCceeecCCCCccccHHHHH
Q 019053          124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCID  156 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~  156 (347)
                      ...|++|-..+.. ....+.| |||+||..|++
T Consensus        78 ~~~C~vC~k~l~~-~~f~~~p-~~~v~H~~C~~  108 (109)
T PF10367_consen   78 STKCSVCGKPLGN-SVFVVFP-CGHVVHYSCIK  108 (109)
T ss_pred             CCCccCcCCcCCC-ceEEEeC-CCeEEeccccc
Confidence            4569999999987 4566677 99999999975

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.63  E-value=0.007  Score=58.19  Aligned_cols=44  Identities=25%  Similarity=0.598  Sum_probs=33.9

Q ss_pred             cCcccccccccccCCceeecCCCCcc-ccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053          124 IYGCVVCLNEFQEQDMLRVLPNCSHA-FHLDCIDIWLQSNANCPLCRTSISGT  175 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~CI~~WL~~~~tCPlCR~~i~~~  175 (347)
                      ..-|+||++.-.+   ...|+ |||. -|.+|-...    +.||+||+.|...
T Consensus       300 ~~LC~ICmDaP~D---CvfLe-CGHmVtCt~CGkrm----~eCPICRqyi~rv  344 (350)
T KOG4275|consen  300 RRLCAICMDAPRD---CVFLE-CGHMVTCTKCGKRM----NECPICRQYIVRV  344 (350)
T ss_pred             HHHHHHHhcCCcc---eEEee-cCcEEeehhhcccc----ccCchHHHHHHHH
Confidence            4569999887554   88998 9996 788895543    4799999977543

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.48  E-value=0.025  Score=55.79  Aligned_cols=49  Identities=24%  Similarity=0.457  Sum_probs=40.2

Q ss_pred             CccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCC
Q 019053          122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISG  174 (347)
Q Consensus       122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~  174 (347)
                      .++..|+||...--   .....| |+|.-|..||.+-|...+.|=.|++.+..
T Consensus       420 sEd~lCpICyA~pi---~Avf~P-C~H~SC~~CI~qHlmN~k~CFfCktTv~~  468 (489)
T KOG4692|consen  420 SEDNLCPICYAGPI---NAVFAP-CSHRSCYGCITQHLMNCKRCFFCKTTVID  468 (489)
T ss_pred             cccccCcceecccc---hhhccC-CCCchHHHHHHHHHhcCCeeeEecceeee
Confidence            44578999965432   356777 99999999999999999999999988764

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.46  E-value=0.03  Score=52.78  Aligned_cols=52  Identities=15%  Similarity=0.330  Sum_probs=45.9

Q ss_pred             cCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053          124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT  175 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~  175 (347)
                      ...|+||.+.+.+.-.+.+|..|||+|+.+|++..+.....||+|-.++...
T Consensus       221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdr  272 (303)
T KOG3039|consen  221 RYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDR  272 (303)
T ss_pred             ceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCccc
Confidence            3679999999999888888888999999999999999999999997777543

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.32  E-value=0.038  Score=52.85  Aligned_cols=49  Identities=24%  Similarity=0.434  Sum_probs=35.5

Q ss_pred             CccCcccccccccccCCceeecCCCCccccHHHHHHHHhc--CCCCCcccCCCC
Q 019053          122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS--NANCPLCRTSIS  173 (347)
Q Consensus       122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~--~~tCPlCR~~i~  173 (347)
                      .+..+|++|-+.=...  .... +|+|+||..||..=+..  ..+||.|-.++.
T Consensus       237 t~~~~C~~Cg~~PtiP--~~~~-~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  237 TSDTECPVCGEPPTIP--HVIG-KCGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             cCCceeeccCCCCCCC--eeec-cccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            3457999997764332  3334 49999999999986653  367999977665

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=94.29  E-value=0.038  Score=53.40  Aligned_cols=48  Identities=29%  Similarity=0.641  Sum_probs=35.8

Q ss_pred             CcccccccccccCCceeecCCCCccccHHHHHHHH-hcCCCCCcc-cCCCCCC
Q 019053          125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWL-QSNANCPLC-RTSISGT  175 (347)
Q Consensus       125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL-~~~~tCPlC-R~~i~~~  175 (347)
                      ..|+.|-.-+.+.   ..+|.|+|.||.+||..-| .+...||.| |.+|...
T Consensus       275 LkCplc~~Llrnp---~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld  324 (427)
T COG5222         275 LKCPLCHCLLRNP---MKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLD  324 (427)
T ss_pred             ccCcchhhhhhCc---ccCccccchHHHHHHhhhhhhccccCCCcccccchhh
Confidence            5699998777663   3346799999999999765 567789999 4455433

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=94.02  E-value=0.042  Score=39.19  Aligned_cols=44  Identities=30%  Similarity=0.683  Sum_probs=21.9

Q ss_pred             ccccccccccCCceeecC-CCCccccHHHHHHHHh-cCCCCCcccCC
Q 019053          127 CVVCLNEFQEQDMLRVLP-NCSHAFHLDCIDIWLQ-SNANCPLCRTS  171 (347)
Q Consensus       127 C~ICl~~~~~~~~~~~lp-~C~H~FH~~CI~~WL~-~~~tCPlCR~~  171 (347)
                      |++|.+++...+. .+.| .|++.++..|...-++ .+..||-||.+
T Consensus         1 cp~C~e~~d~~d~-~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~   46 (48)
T PF14570_consen    1 CPLCDEELDETDK-DFYPCECGFQICRFCYHDILENEGGRCPGCREP   46 (48)
T ss_dssp             -TTTS-B--CCCT-T--SSTTS----HHHHHHHTTSS-SB-TTT--B
T ss_pred             CCCcccccccCCC-ccccCcCCCcHHHHHHHHHHhccCCCCCCCCCC
Confidence            7899999944332 2334 3889999999888776 46779999976

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.97  E-value=0.0049  Score=61.24  Aligned_cols=50  Identities=20%  Similarity=0.618  Sum_probs=43.9

Q ss_pred             CcccccccccccC-CceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053          125 YGCVVCLNEFQEQ-DMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT  175 (347)
Q Consensus       125 ~~C~ICl~~~~~~-~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~  175 (347)
                      ..|+||.+.++.. +++..+- |||.+|.+||.+||.+...||-|++.+...
T Consensus       197 ~sl~I~~~slK~~y~k~~~~~-~g~~~~~~kL~k~L~~~~kl~~~~rel~~~  247 (465)
T KOG0827|consen  197 GSLSICFESLKQNYDKISAIV-CGHIYHHGKLSKWLATKRKLPSCRRELPKN  247 (465)
T ss_pred             hhhHhhHHHHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHhHHHHhhhhhh
Confidence            5799999999887 6677775 999999999999999988899999988754

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=93.79  E-value=0.072  Score=52.49  Aligned_cols=65  Identities=23%  Similarity=0.468  Sum_probs=45.2

Q ss_pred             HHhcCCceeeecc-CCCCccCcccccccccccCCceeecCCCCccccHHHHHHH--HhcCCCCCcccCCCCC
Q 019053          106 VIRDIPTFQFKRE-GEDMSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIW--LQSNANCPLCRTSISG  174 (347)
Q Consensus       106 ~i~~lp~~~~~~~-~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~W--L~~~~tCPlCR~~i~~  174 (347)
                      .+..-|.+.-... +.+.+...|.||-+.+.-   ..++| |+|..|--|--..  |...+.||+||+....
T Consensus        42 nlsaEPnlttsSaddtDEen~~C~ICA~~~TY---s~~~P-C~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~  109 (493)
T COG5236          42 NLSAEPNLTTSSADDTDEENMNCQICAGSTTY---SARYP-CGHQICHACAVRLRALYMQKGCPLCRTETEA  109 (493)
T ss_pred             ccccCCccccccccccccccceeEEecCCceE---EEecc-CCchHHHHHHHHHHHHHhccCCCccccccce
Confidence            3444454443332 344455789999887665   67888 9999999997654  5667899999997654

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=93.65  E-value=0.038  Score=38.41  Aligned_cols=41  Identities=22%  Similarity=0.651  Sum_probs=23.8

Q ss_pred             ccccccccccCCceeecCCCCccccHHHHHHHHhcCC--CCCcc
Q 019053          127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNA--NCPLC  168 (347)
Q Consensus       127 C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~--tCPlC  168 (347)
                      |.+|.+....|...... .|+=.+|..|++.++....  .||.|
T Consensus         1 C~~C~~iv~~G~~C~~~-~C~~r~H~~C~~~y~r~~~~~~CP~C   43 (43)
T PF08746_consen    1 CEACKEIVTQGQRCSNR-DCNVRLHDDCFKKYFRHRSNPKCPNC   43 (43)
T ss_dssp             -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred             CcccchhHeeeccCCCC-ccCchHHHHHHHHHHhcCCCCCCcCC
Confidence            67787777776554333 3888999999999998765  69988

; PDB: 3NW0_A 2CT0_A.

>PF04641 Rtf2: Rtf2 RING-finger

Probab=93.43  E-value=0.083  Score=50.37  Aligned_cols=51  Identities=20%  Similarity=0.439  Sum_probs=39.1

Q ss_pred             CccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCC
Q 019053          122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSIS  173 (347)
Q Consensus       122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~  173 (347)
                      .....|+|+..+|........+-.|||+|-..+|..-- ....||+|-.++.
T Consensus       111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~  161 (260)
T PF04641_consen  111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFT  161 (260)
T ss_pred             CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccc
Confidence            44578999999996555555554499999999999973 3567999966665

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.15  E-value=0.033  Score=53.72  Aligned_cols=46  Identities=26%  Similarity=0.565  Sum_probs=38.7

Q ss_pred             CcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCC
Q 019053          125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISG  174 (347)
Q Consensus       125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~  174 (347)
                      +.|-||...|...   +++. |+|.||..|...=++....|++|-+.+..
T Consensus       242 f~c~icr~~f~~p---Vvt~-c~h~fc~~ca~~~~qk~~~c~vC~~~t~g  287 (313)
T KOG1813|consen  242 FKCFICRKYFYRP---VVTK-CGHYFCEVCALKPYQKGEKCYVCSQQTHG  287 (313)
T ss_pred             ccccccccccccc---hhhc-CCceeehhhhccccccCCcceeccccccc
Confidence            5699999999884   4454 99999999999988888999999776543

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=93.08  E-value=0.032  Score=52.32  Aligned_cols=46  Identities=30%  Similarity=0.608  Sum_probs=32.9

Q ss_pred             cccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053          126 GCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT  175 (347)
Q Consensus       126 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~  175 (347)
                      -|..|.-- ..++...++. |.|+||..|...-.  ...||+||..|...
T Consensus         5 hCn~C~~~-~~~~~f~LTa-C~HvfC~~C~k~~~--~~~C~lCkk~ir~i   50 (233)
T KOG4739|consen    5 HCNKCFRF-PSQDPFFLTA-CRHVFCEPCLKASS--PDVCPLCKKSIRII   50 (233)
T ss_pred             Eecccccc-CCCCceeeee-chhhhhhhhcccCC--ccccccccceeeee
Confidence            36666543 3366777776 99999999977632  23899999986544

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.03  E-value=0.071  Score=51.29  Aligned_cols=48  Identities=29%  Similarity=0.776  Sum_probs=38.8

Q ss_pred             cCcccccccccccCC---ceeecCCCCccccHHHHHHHHhcC-CCCCcccCCC
Q 019053          124 IYGCVVCLNEFQEQD---MLRVLPNCSHAFHLDCIDIWLQSN-ANCPLCRTSI  172 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~---~~~~lp~C~H~FH~~CI~~WL~~~-~tCPlCR~~i  172 (347)
                      ..+|.||-++|..++   ..+.|. |||.|+..|+..-+... ..||.||...
T Consensus         3 ~~~c~~c~~~~s~~~~~~~p~~l~-c~h~~c~~c~~~l~~~~~i~cpfcR~~~   54 (296)
T KOG4185|consen    3 FPECEICNEDYSSEDGDHIPRVLK-CGHTICQNCASKLLGNSRILCPFCRETT   54 (296)
T ss_pred             CCceeecCccccccCcccCCcccc-cCceehHhHHHHHhcCceeeccCCCCcc
Confidence            357999999999874   356665 99999999998877653 4599999986

>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.61  E-value=0.071  Score=48.06  Aligned_cols=29  Identities=34%  Similarity=1.026  Sum_probs=23.6

Q ss_pred             CCCccccHHHHHHHHhc----C-------CCCCcccCCCC
Q 019053          145 NCSHAFHLDCIDIWLQS----N-------ANCPLCRTSIS  173 (347)
Q Consensus       145 ~C~H~FH~~CI~~WL~~----~-------~tCPlCR~~i~  173 (347)
                      .||..||.-|+..||..    .       ..||.|-.+|.
T Consensus       189 qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia  228 (234)
T KOG3268|consen  189 QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA  228 (234)
T ss_pred             ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence            49999999999999853    2       24999987775

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=92.06  E-value=0.076  Score=38.89  Aligned_cols=45  Identities=29%  Similarity=0.507  Sum_probs=31.9

Q ss_pred             CcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053          125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT  175 (347)
Q Consensus       125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~  175 (347)
                      ..|..|...   +..-.++| |+|+.+..|.+.|  .-+-||+|-+++...
T Consensus         8 ~~~~~~~~~---~~~~~~~p-CgH~I~~~~f~~~--rYngCPfC~~~~~~~   52 (55)
T PF14447_consen    8 QPCVFCGFV---GTKGTVLP-CGHLICDNCFPGE--RYNGCPFCGTPFEFD   52 (55)
T ss_pred             eeEEEcccc---cccccccc-ccceeeccccChh--hccCCCCCCCcccCC
Confidence            346555443   33356787 9999999998875  345699998888654

>KOG1940 consensus Zn-finger protein [General function prediction only]

Probab=90.66  E-value=0.14  Score=49.38  Aligned_cols=50  Identities=22%  Similarity=0.537  Sum_probs=40.3

Q ss_pred             cCcccccccccccCCc-eeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053          124 IYGCVVCLNEFQEQDM-LRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT  175 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~~-~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~  175 (347)
                      ...|+||.+.+..... +..++ |||.-|..|+......+-+||+|.. +..+
T Consensus       158 ~~ncPic~e~l~~s~~~~~~~~-CgH~~h~~cf~e~~~~~y~CP~C~~-~~d~  208 (276)
T KOG1940|consen  158 EFNCPICKEYLFLSFEDAGVLK-CGHYMHSRCFEEMICEGYTCPICSK-PGDM  208 (276)
T ss_pred             cCCCchhHHHhccccccCCccC-cccchHHHHHHHHhccCCCCCcccc-hHHH
Confidence            3459999998877654 55666 9999999999999888899999988 5433

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=90.28  E-value=0.32  Score=35.54  Aligned_cols=34  Identities=32%  Similarity=0.730  Sum_probs=30.0

Q ss_pred             cCcccccccccccCCceeecCCCCccccHHHHHH
Q 019053          124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDI  157 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~  157 (347)
                      ...|.+|-+.|.+++.+.+-|.|+-.+|..|.+.
T Consensus         5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~   38 (54)
T PF14446_consen    5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK   38 (54)
T ss_pred             CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence            3569999999998888999999999999999554

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=90.22  E-value=0.11  Score=55.92  Aligned_cols=47  Identities=32%  Similarity=0.775  Sum_probs=36.9

Q ss_pred             CcccccccccccCCceeecCCCCccccHHHHHHHHhc--CCCCCcccCCCCCCC
Q 019053          125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS--NANCPLCRTSISGTT  176 (347)
Q Consensus       125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~--~~tCPlCR~~i~~~~  176 (347)
                      ..|.||++    .+...+.+ |+|.||..|+..-+..  ...||+||..+...+
T Consensus       455 ~~c~ic~~----~~~~~it~-c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~  503 (674)
T KOG1001|consen  455 HWCHICCD----LDSFFITR-CGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK  503 (674)
T ss_pred             cccccccc----cccceeec-ccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence            68999999    34456666 9999999999987754  234999999887654

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=90.07  E-value=0.11  Score=50.44  Aligned_cols=44  Identities=32%  Similarity=0.685  Sum_probs=29.8

Q ss_pred             CcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCC
Q 019053          125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSIS  173 (347)
Q Consensus       125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~  173 (347)
                      -.|.-|=-.+.  ---|++| |+|+||.+|...  ..-+.||+|-..|.
T Consensus        91 HfCd~Cd~PI~--IYGRmIP-CkHvFCl~CAr~--~~dK~Cp~C~d~Vq  134 (389)
T KOG2932|consen   91 HFCDRCDFPIA--IYGRMIP-CKHVFCLECARS--DSDKICPLCDDRVQ  134 (389)
T ss_pred             EeecccCCcce--eeecccc-cchhhhhhhhhc--CccccCcCcccHHH
Confidence            34766633322  2346778 999999999765  34568999976554

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.41  E-value=0.18  Score=54.82  Aligned_cols=40  Identities=23%  Similarity=0.735  Sum_probs=30.4

Q ss_pred             CcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccC
Q 019053          125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRT  170 (347)
Q Consensus       125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~  170 (347)
                      ..|..|-..++-.  ...- .|||.||.+|+.   .....||-|+.
T Consensus       841 skCs~C~~~LdlP--~VhF-~CgHsyHqhC~e---~~~~~CP~C~~  880 (933)
T KOG2114|consen  841 SKCSACEGTLDLP--FVHF-LCGHSYHQHCLE---DKEDKCPKCLP  880 (933)
T ss_pred             eeecccCCccccc--eeee-ecccHHHHHhhc---cCcccCCccch
Confidence            5799998877654  2222 399999999998   44567999976

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]

Probab=89.22  E-value=0.14  Score=57.88  Aligned_cols=46  Identities=26%  Similarity=0.807  Sum_probs=38.0

Q ss_pred             cCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCC
Q 019053          124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSI  172 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i  172 (347)
                      ...|.||++.+.+...+.   .|||.++..|+..|+..+..||.|+...
T Consensus      1153 ~~~c~ic~dil~~~~~I~---~cgh~~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQGGIA---GCGHEPCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred             ccchHHHHHHHHhcCCee---eechhHhhhHHHHHHHHhccCcchhhhh
Confidence            457999999988543332   3999999999999999999999998543

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=88.93  E-value=0.23  Score=53.38  Aligned_cols=23  Identities=30%  Similarity=0.882  Sum_probs=21.1

Q ss_pred             CCCccccHHHHHHHHhcCCCCCc
Q 019053          145 NCSHAFHLDCIDIWLQSNANCPL  167 (347)
Q Consensus       145 ~C~H~FH~~CI~~WL~~~~tCPl  167 (347)
                      .|+|+-|..|.+.|+.....||-
T Consensus      1047 ~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1047 TCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred             cccccccHHHHHHHHhcCCcCCC
Confidence            49999999999999999999974

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.62  E-value=0.16  Score=53.60  Aligned_cols=44  Identities=32%  Similarity=0.675  Sum_probs=32.9

Q ss_pred             CcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCC
Q 019053          125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTS  171 (347)
Q Consensus       125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~  171 (347)
                      ..|.||+..|......-+.+.|||..|.+|+..-.  +.+|| |+.+
T Consensus        12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly--n~scp-~~~D   55 (861)
T KOG3161|consen   12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY--NASCP-TKRD   55 (861)
T ss_pred             hhchHHHHHHHHHhcCcccccccchHHHHHHHhHh--hccCC-CCcc
Confidence            46999999987765333333599999999998854  57899 7554

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=87.97  E-value=0.38  Score=48.06  Aligned_cols=27  Identities=33%  Similarity=1.040  Sum_probs=20.3

Q ss_pred             CCccccHHHHHHHHhcC-------------CCCCcccCCC
Q 019053          146 CSHAFHLDCIDIWLQSN-------------ANCPLCRTSI  172 (347)
Q Consensus       146 C~H~FH~~CI~~WL~~~-------------~tCPlCR~~i  172 (347)
                      |.-.+|.+|+.+|+.++             .+||.||+.+
T Consensus       311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~F  350 (358)
T PF10272_consen  311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKF  350 (358)
T ss_pred             ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccc
Confidence            33457899999998543             2599999975

They are purported to be transmembrane protein-precursors but their function is unknown.

>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus []

Probab=87.82  E-value=0.52  Score=37.85  Aligned_cols=39  Identities=15%  Similarity=0.041  Sum_probs=28.6

Q ss_pred             CCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019053           28 QASLSNSESAFPILAIAILSIMGTAFLLLSYYVFVSKCC   66 (347)
Q Consensus        28 ~~~~~~s~~~~~ilviiil~il~~~~lli~~~~~~~r~c   66 (347)
                      .+.+++++..|..++.+++.+++++.++.+.|.+++|=|
T Consensus        24 ~~~p~ss~~~ws~vv~v~i~~lvaVg~~YL~y~~fLkDl   62 (91)
T PF01708_consen   24 TAAPSSSGLPWSRVVEVAIFTLVAVGCLYLAYTWFLKDL   62 (91)
T ss_pred             CCCCCCCCCcceeEeeeeehHHHHHHHHHHHHHHHHHHH
Confidence            344556778888888888888888877777777776644

; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=86.50  E-value=2.5  Score=42.59  Aligned_cols=46  Identities=22%  Similarity=0.543  Sum_probs=39.7

Q ss_pred             CccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCC---CCCcc
Q 019053          122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNA---NCPLC  168 (347)
Q Consensus       122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~---tCPlC  168 (347)
                      .+...|+|-.+.-.+......|. |||+...+-|....++..   .||.|
T Consensus       332 HSvF~CPVlKeqtsdeNPPm~L~-CGHVISkdAlnrLS~ng~~sfKCPYC  380 (394)
T KOG2817|consen  332 HSVFICPVLKEQTSDENPPMMLI-CGHVISKDALNRLSKNGSQSFKCPYC  380 (394)
T ss_pred             cceeecccchhhccCCCCCeeee-ccceecHHHHHHHhhCCCeeeeCCCC
Confidence            44578999999888888889998 999999999999887654   49999

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=86.10  E-value=0.69  Score=41.02  Aligned_cols=34  Identities=21%  Similarity=0.513  Sum_probs=21.2

Q ss_pred             cCcccccccccccCCceeecC-----------CCCc-cccHHHHHHHHh
Q 019053          124 IYGCVVCLNEFQEQDMLRVLP-----------NCSH-AFHLDCIDIWLQ  160 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~~~~~lp-----------~C~H-~FH~~CI~~WL~  160 (347)
                      +..|+||||-=-+.   .+|-           -|+- .=|..|++.+-+
T Consensus         2 d~~CpICme~PHNA---VLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk   47 (162)
T PF07800_consen    2 DVTCPICMEHPHNA---VLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK   47 (162)
T ss_pred             CccCceeccCCCce---EEEEeccccCCccccccCCccchhHHHHHHHH
Confidence            35799999875442   2222           1333 357899999853

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=85.72  E-value=0.43  Score=44.19  Aligned_cols=40  Identities=28%  Similarity=0.672  Sum_probs=29.8

Q ss_pred             ccccccccccCCceeecCCCCcc-ccHHHHHHHHhcCCCCCcccCCCCC
Q 019053          127 CVVCLNEFQEQDMLRVLPNCSHA-FHLDCIDIWLQSNANCPLCRTSISG  174 (347)
Q Consensus       127 C~ICl~~~~~~~~~~~lp~C~H~-FH~~CI~~WL~~~~tCPlCR~~i~~  174 (347)
                      |-.|-+.   +..+.++| |.|. +|..|=..    -.+||+|+.....
T Consensus       161 Cr~C~~~---~~~VlllP-CrHl~lC~~C~~~----~~~CPiC~~~~~s  201 (207)
T KOG1100|consen  161 CRKCGER---EATVLLLP-CRHLCLCGICDES----LRICPICRSPKTS  201 (207)
T ss_pred             ceecCcC---CceEEeec-ccceEeccccccc----CccCCCCcChhhc
Confidence            7788554   44588999 9997 88999554    3569999887653

>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=85.04  E-value=0.62  Score=50.64  Aligned_cols=54  Identities=26%  Similarity=0.611  Sum_probs=39.8

Q ss_pred             cCcccccccccccCCceeecC-CCC---ccccHHHHHHHHhcC--CCCCcccCCCCCCCCC
Q 019053          124 IYGCVVCLNEFQEQDMLRVLP-NCS---HAFHLDCIDIWLQSN--ANCPLCRTSISGTTRY  178 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~~~~~lp-~C~---H~FH~~CI~~WL~~~--~tCPlCR~~i~~~~~~  178 (347)
                      ...|-||..+=..++.+-. | +|.   ...|.+|+.+|+...  ..|-+|+.++.-.+.+
T Consensus        12 ~~~CRICr~e~~~d~pLfh-PCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~IY   71 (1175)
T COG5183          12 KRSCRICRTEDIRDDPLFH-PCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDIY   71 (1175)
T ss_pred             chhceeecCCCCCCCcCcc-cccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeeec
Confidence            4689999998777776543 4 233   358999999999754  3499999988765533

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=84.94  E-value=0.67  Score=45.77  Aligned_cols=52  Identities=23%  Similarity=0.429  Sum_probs=36.9

Q ss_pred             cCcccccccccccCCce-eecCCCCccccHHHHHHHHh-cCCCCCcccCCCCCCC
Q 019053          124 IYGCVVCLNEFQEQDML-RVLPNCSHAFHLDCIDIWLQ-SNANCPLCRTSISGTT  176 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~~~-~~lp~C~H~FH~~CI~~WL~-~~~tCPlCR~~i~~~~  176 (347)
                      ++-|+.|++++...|+- .-.| ||...|.-|....-+ -+..||-||+....+.
T Consensus        14 ed~cplcie~mditdknf~pc~-cgy~ic~fc~~~irq~lngrcpacrr~y~den   67 (480)
T COG5175          14 EDYCPLCIEPMDITDKNFFPCP-CGYQICQFCYNNIRQNLNGRCPACRRKYDDEN   67 (480)
T ss_pred             cccCcccccccccccCCcccCC-cccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence            34599999999877753 3344 888877777554432 2567999999887665

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=84.47  E-value=0.8  Score=39.51  Aligned_cols=54  Identities=24%  Similarity=0.612  Sum_probs=37.6

Q ss_pred             ccCcccccccccccCCceeecCCCCccccHHHHHH-HHh--cCCCCCcccCCCCCCC
Q 019053          123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDI-WLQ--SNANCPLCRTSISGTT  176 (347)
Q Consensus       123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~-WL~--~~~tCPlCR~~i~~~~  176 (347)
                      ...+|.||.|.-.+..-+.--..||-..|..|-.. |-.  .+..||+|++++...+
T Consensus        79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~  135 (140)
T PF05290_consen   79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS  135 (140)
T ss_pred             CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence            46889999988665432222225898888887554 743  4678999999887554

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=83.50  E-value=0.89  Score=49.09  Aligned_cols=41  Identities=20%  Similarity=0.361  Sum_probs=31.7

Q ss_pred             CcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCc
Q 019053          125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPL  167 (347)
Q Consensus       125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPl  167 (347)
                      ..|.+|-..+..  .....+.|+|.-|.+|+..|+..+.-||.
T Consensus       780 ~~CtVC~~vi~G--~~~~c~~C~H~gH~sh~~sw~~~~s~ca~  820 (839)
T KOG0269|consen  780 AKCTVCDLVIRG--VDVWCQVCGHGGHDSHLKSWFFKASPCAK  820 (839)
T ss_pred             cCceeecceeee--eEeecccccccccHHHHHHHHhcCCCCcc
Confidence            469999666543  23344579999999999999999888876

>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=82.88  E-value=0.63  Score=44.61  Aligned_cols=51  Identities=27%  Similarity=0.662  Sum_probs=37.2

Q ss_pred             cCcccccccccccCCc-eeecCCCC-----ccccHHHHHHHHh--cCCCCCcccCCCCCC
Q 019053          124 IYGCVVCLNEFQEQDM-LRVLPNCS-----HAFHLDCIDIWLQ--SNANCPLCRTSISGT  175 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~~-~~~lp~C~-----H~FH~~CI~~WL~--~~~tCPlCR~~i~~~  175 (347)
                      ...|=||.++...... ....| |.     +..|..|++.|+.  ....|.+|.......
T Consensus        78 ~~~cRIc~~~~~~~~~~~l~~p-C~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~  136 (323)
T KOG1609|consen   78 GPICRICHEEDEESNGLLLISP-CSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV  136 (323)
T ss_pred             CCcEEEEecccccccccccccC-ccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence            3679999998765432 34555 64     5689999999997  455699998876554

>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=82.86  E-value=0.51  Score=33.61  Aligned_cols=43  Identities=28%  Similarity=0.754  Sum_probs=24.9

Q ss_pred             cccccccccccCCceeecCCCC-ccccHHHHHHHHhcCCCCCcccCCCCC
Q 019053          126 GCVVCLNEFQEQDMLRVLPNCS-HAFHLDCIDIWLQSNANCPLCRTSISG  174 (347)
Q Consensus       126 ~C~ICl~~~~~~~~~~~lp~C~-H~FH~~CI~~WL~~~~tCPlCR~~i~~  174 (347)
                      .|--|+-+.+.   +.   +|+ |..+..|+...|.....||+|..++..
T Consensus         4 nCKsCWf~~k~---Li---~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt   47 (50)
T PF03854_consen    4 NCKSCWFANKG---LI---KCSDHYLCLNCLTLMLSRSDRCPICGKPLPT   47 (50)
T ss_dssp             ---SS-S--SS---EE---E-SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred             cChhhhhcCCC---ee---eecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence            46667654332   22   375 999999999999999999999888753

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.

>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.75  E-value=0.76  Score=50.38  Aligned_cols=34  Identities=29%  Similarity=0.627  Sum_probs=26.7

Q ss_pred             cCcccccccccccCCceeecCCCCccccHHHHHHHH
Q 019053          124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWL  159 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL  159 (347)
                      .+.|.+|.-.+.... -.+-| |||.||.+||..-.
T Consensus       817 ~d~C~~C~~~ll~~p-F~vf~-CgH~FH~~Cl~~~v  850 (911)
T KOG2034|consen  817 QDSCDHCGRPLLIKP-FYVFP-CGHCFHRDCLIRHV  850 (911)
T ss_pred             ccchHHhcchhhcCc-ceeee-ccchHHHHHHHHHH
Confidence            568999988877653 34556 99999999998864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	347
1iym_A	55	Ring-H2 Finger Domain Of El5 Length = 55		7e-11
1x4j_A	75	Solution Structure Of Ring Finger In Ring Finger Pr		3e-10
2l0b_A	91	Solution Nmr Structure Of Zinc Finger Domain Of E3		2e-06
2ep4_A	74	Solution Structure Of Ring Finger From Human Ring F		3e-06
2ect_A	78	Solution Structure Of The Zinc Finger, C3hc4 Type (		5e-06
2kiz_A	69	Solution Structure Of Arkadia Ring-H2 Finger Domain		7e-06
4ayc_B	138	Rnf8 Ring Domain Structure Length = 138		4e-04
4ayc_A	138	Rnf8 Ring Domain Structure Length = 138		5e-04
4epo_C	149	Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HE		6e-04

>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5 Length = 55

Iteration: 1
 Score = 64.7 bits (156), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSI 172
           C VCL E ++ +  R LP C H FH +C+D+WL S++ CPLCR ++
Sbjct: 8   CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53

>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein 38 Length = 75

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 110 IPTFQFKREGEDMSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCR 169
           +P+++F           CVVC+ +F+ + +LRVLP C+H FH  C+D WL++N  CP+CR
Sbjct: 9   LPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICR 67
Query: 170 T 170
Sbjct: 68  A 68

>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3 Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target Hr4710b Length = 91

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Query: 119 GEDMSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCR 169
           G++M    C +C +E+ + D+   LP C H FH  C+ IWLQ +  CP+CR
Sbjct: 38  GQEMC---CPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCR 84

>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger Protein 24 Length = 74

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSI 172
           C VCL +F+ +D L + P C HAFH  C+  WL+    CPLC   +
Sbjct: 18  CAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPV 62

>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring Finger) Domain Of Ring Finger Protein 126 Length = 78

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISG 174
           C VC  ++   + +R LP C+H FH  CI  WL+ + +CP+CR S++G
Sbjct: 18  CPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTG 64

>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain Length = 69

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISG 174
           C +CL+  +E + +R LP C H FH  C+D WL +N  CP+CR  I  
Sbjct: 17  CTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEA 63

>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure Length = 138

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTT 176
           C++C   F E     V  NC+H+F   CI+ W++    CP+CR  I   T
Sbjct: 56  CIICSEYFIEA----VTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKT 101

>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure Length = 138

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTT 176
           C++C   F E     V  NC+H+F   CI+ W++    CP+CR  I   T
Sbjct: 56  CIICSEYFIEA----VTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKT 101

>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER Length = 149

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTT 176
           C++C   F E     V  NC+H+F   CI+ W++    CP+CR  I   T
Sbjct: 67  CIICSEYFIEA----VTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKT 112

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	347
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	3e-30
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	1e-26
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	6e-23
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	3e-22
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	9e-21
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	2e-18
2ect_A	78	Ring finger protein 126; metal binding protein, st	2e-18
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	4e-18
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	1e-15
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	2e-14
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	3e-13
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	2e-12
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	3e-12
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	1e-11
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	1e-11
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	6e-10
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	4e-09
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	9e-09
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	2e-08
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	2e-08
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	5e-08
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	8e-08
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	3e-07
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	3e-07
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	8e-07
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	1e-05
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	2e-06
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	2e-06
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	5e-06
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	8e-06
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	2e-05
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	2e-05
3nw0_A	238	Non-structural maintenance of chromosomes element	5e-05
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	6e-05
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	1e-04
1z6u_A	150	NP95-like ring finger protein isoform B; structura	1e-04
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	3e-04
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	4e-04
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	4e-04
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	5e-04
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	5e-04

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score =  109 bits (274), Expect = 3e-30
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)

Query: 105 SVIRDIPTFQFKREGEDMSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNAN 164
                +P+++F           CVVC+ +F+ + +LRVLP C+H FH  C+D WL++N  
Sbjct: 4   GSSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRT 62

Query: 165 CPLCRTSISGTT 176
           CP+CR     ++
Sbjct: 63  CPICRADSGPSS 74

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Length = 55

 Score = 99.2 bits (248), Expect = 1e-26
 Identities = 22/46 (47%), Positives = 32/46 (69%)

Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSI 172
           C VCL E ++ +  R LP C H FH +C+D+WL S++ CPLCR ++
Sbjct: 8   CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69

 Score = 89.7 bits (223), Expect = 6e-23
 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 5/62 (8%)

Query: 116 KREGEDMSIYG----CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTS 171
           K++GE+ +       C +CL+  +E + +R LP C H FH  C+D WL +N  CP+CR  
Sbjct: 2   KQDGEEGTEEDTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVD 60

Query: 172 IS 173
           I 
Sbjct: 61  IE 62

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91

 Score = 88.6 bits (220), Expect = 3e-22
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 2/75 (2%)

Query: 99  NRGLDDSVIRDIPTFQFKREGEDMSIYG-CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDI 157
           N       I  +P      +   +     C +C +E+ + D+   LP C H FH  C+ I
Sbjct: 14  NPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSI 72

Query: 158 WLQSNANCPLCRTSI 172
           WLQ +  CP+CR   
Sbjct: 73  WLQKSGTCPVCRCMF 87

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 84.0 bits (208), Expect = 9e-21
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTTRYP 179
           C VCL +F+ +D L + P C HAFH  C+  WL+    CPLC   +    +  
Sbjct: 18  CAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQLS 69

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 77.3 bits (191), Expect = 2e-18
 Identities = 14/48 (29%), Positives = 21/48 (43%)

Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISG 174
           C +CL +     ++  +  C H  H  C +  L+    CPLC    SG
Sbjct: 8   CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSSG 55

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 77.9 bits (192), Expect = 2e-18
 Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISG 174
           C VC  ++   + +R LP C+H FH  CI  WL+ + +CP+CR S++G
Sbjct: 18  CPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTG 64

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 76.9 bits (189), Expect = 4e-18
 Identities = 16/43 (37%), Positives = 28/43 (65%)

Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCR 169
           C+ C  E +++D + V   C+H+FH  C+ +W++ N  CPLC+
Sbjct: 29  CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQ 71

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 70.1 bits (172), Expect = 1e-15
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 5/51 (9%)

Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTTR 177
           C +C++   +     +LP C+H+F   CID W   + NCP+CR  ++G   
Sbjct: 18  CCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGANE 63

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 66.3 bits (162), Expect = 2e-14
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 3/47 (6%)

Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSIS 173
           C +CL +        +   C HAF   CI  W++ N  CPLC+  + 
Sbjct: 8   CPICLEDPSNY---SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Length = 106

 Score = 64.5 bits (156), Expect = 3e-13
 Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 8/78 (10%)

Query: 92  ALSPTMWNRGLDDSVIRDIPTFQFKREGEDMSIYGCVVCLNEFQEQDMLRVLPNCSHAFH 151
           A++   W+  +D+  I         R         C         ++       C+HAFH
Sbjct: 27  AVALWAWDIVVDNCAI--------CRNHIMDLCIECQANQASATSEECTVAWGVCNHAFH 78

Query: 152 LDCIDIWLQSNANCPLCR 169
             CI  WL++   CPL  
Sbjct: 79  FHCISRWLKTRQVCPLDN 96

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 60.7 bits (147), Expect = 2e-12
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 127 CVVCLNEFQEQDMLR---VLPNCSHAFHLDCIDIWLQSNANCPLCRTSIS 173
           C +C++ + E        V   C H F   C+   L++   CP CR  I+
Sbjct: 18  CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Length = 117

 Score = 62.2 bits (150), Expect = 3e-12
 Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 8/78 (10%)

Query: 92  ALSPTMWNRGLDDSVIRDIPTFQFKREGEDMSIYGCVVCLNEFQEQDMLRVLPNCSHAFH 151
           A++   W+  +D+  I         R         C         ++       C+HAFH
Sbjct: 38  AVALWAWDIVVDNCAI--------CRNHIMDLCIECQANQASATSEECTVAWGVCNHAFH 89

Query: 152 LDCIDIWLQSNANCPLCR 169
             CI  WL++   CPL  
Sbjct: 90  FHCISRWLKTRQVCPLDN 107

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 58.6 bits (142), Expect = 1e-11
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 6/65 (9%)

Query: 119 GEDMSIYGCVVCLNEFQEQDMLR---VLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT 175
           G  +S   C +C++ + E        V   C H F   C+   L++   CP CR  I+  
Sbjct: 1   GAMVS---CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 57

Query: 176 TRYPI 180
             +PI
Sbjct: 58  RYHPI 62

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 58.7 bits (142), Expect = 1e-11
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 127 CVVCLNEFQEQDMLRVLP---NCSHAFHLDCIDIWLQSNANCPLCRTSISGTTRYPI 180
           C +C++ + E      L     C H F   C+   L++   CP CR  I+    +PI
Sbjct: 13  CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 69

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 54.9 bits (132), Expect = 6e-10
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQ-SNANCPLCRTSIS 173
           C +C+ + ++    R+ P+CS      CI  WL    A CP CR  + 
Sbjct: 25  CFICMEKLRDA---RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 51.7 bits (124), Expect = 4e-09
 Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 3/49 (6%)

Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT 175
           C +C     +      +  C H F   CI      +  CP C   +  T
Sbjct: 18  CSICKGYLIDA---TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 50.6 bits (121), Expect = 9e-09
 Identities = 13/51 (25%), Positives = 17/51 (33%), Gaps = 4/51 (7%)

Query: 123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSIS 173
           ++  C +CL          V   C H F   C+         C LCR  I 
Sbjct: 14  TVPECAICLQTCVH----PVSLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 54.8 bits (131), Expect = 2e-08
 Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 5/68 (7%)

Query: 116 KREGEDMSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNAN-CPLCRTSISG 174
                  +   C +C    ++      +  C H     C+  W +S    CP CR  I G
Sbjct: 324 LYCEMGSTFQLCKICAENDKDV----KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379

Query: 175 TTRYPIDQ 182
           T    +D 
Sbjct: 380 TEPIVVDP 387

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 50.2 bits (120), Expect = 2e-08
 Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 4/48 (8%)

Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISG 174
           C +C   FQ      V+  C H F   C     ++   C +C     G
Sbjct: 18  CFICRQAFQN----PVVTKCRHYFCESCALEHFRATPRCYICDQPTGG 61

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74

 Score = 48.4 bits (115), Expect = 5e-08
 Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 5/48 (10%)

Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNAN--CPLCRTSI 172
           C +C +   +    +    C    HL C+  + QSNA   CP C    
Sbjct: 18  CNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 62

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 50.0 bits (119), Expect = 8e-08
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 5/59 (8%)

Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTTR-YPIDQII 184
           C++C   F E     V  NC+H+F   CI+ W++    CP+CR  I   T    +D  I
Sbjct: 67  CIICSEYFIEA----VTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKTYSLVLDNCI 121

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114

 Score = 47.5 bits (112), Expect = 3e-07
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 19/63 (30%)

Query: 127 CVVCLNEFQE--------------QDMLRVLPNCSHAFHLDCIDIWLQSNAN-----CPL 167
           C++C+ +                   ++  L  CSHAFHL C+     +        CP 
Sbjct: 28  CIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPS 87

Query: 168 CRT 170
           C+T
Sbjct: 88  CKT 90

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 47.1 bits (112), Expect = 3e-07
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT 175
           CV+C   F +   +     C H+F   CI  +L+++  CP+C   +  T
Sbjct: 18  CVLCGGYFIDATTI---IECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 47.1 bits (111), Expect = 8e-07
 Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 3/82 (3%)

Query: 127 CVVCLNEFQEQDMLRVLP---NCSHAFHLDCIDIWLQSNANCPLCRTSISGTTRYPIDQI 183
           C +C++ + E      L     C H F   C+   L++   CP CR  I+    +PI   
Sbjct: 10  CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYIG 69

Query: 184 IAPRPSPQGSQQFSESLMGGDD 205
                 P     +SE +  G  
Sbjct: 70  SGTVSCPICMDGYSEIVQNGRL 91

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 43.6 bits (102), Expect = 1e-05
 Identities = 15/54 (27%), Positives = 23/54 (42%)

Query: 120 EDMSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSIS 173
             +S   C+   +E  +   L V   C H F   C+   L++   CP CR  I+
Sbjct: 71  GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 124

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 44.8 bits (106), Expect = 2e-06
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 3/47 (6%)

Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSIS 173
           C +C   F       ++P CSH +   CI  +L     CP C  +++
Sbjct: 25  CGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVT 68

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Length = 381

 Score = 48.3 bits (114), Expect = 2e-06
 Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 15/62 (24%)

Query: 127 CVVCLNEFQEQDMLRVL----PNCSHAFHLDCIDIWLQSN-----------ANCPLCRTS 171
           C +C     +   + ++      C    H  C++ W ++              CP C+  
Sbjct: 311 CNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAK 370

Query: 172 IS 173
           +S
Sbjct: 371 LS 372

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 44.2 bits (104), Expect = 5e-06
 Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 5/60 (8%)

Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNAN-CPLCRTSISGTTRYPIDQIIA 185
           C+ C               C H    DC+D   ++    CP CR  +  +    ++Q + 
Sbjct: 55  CICCQELVFRPITT----VCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQ 110

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 42.4 bits (100), Expect = 8e-06
 Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 10/63 (15%)

Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNAN--CPLCRTSISGTTRYPIDQII 184
           C++C +   +     V+P C +++  +CI   L  +    CP C  +         D + 
Sbjct: 18  CLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV-----SPDALS 69

Query: 185 APR 187
            P 
Sbjct: 70  GPS 72

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNAN---CPLCRTSIS 173
           C +C+  F E+ +   L +C H     C++  L S+ N   CP C     
Sbjct: 18  CPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 42.2 bits (99), Expect = 2e-05
 Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 5/56 (8%)

Query: 125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCI-DIWLQSNANCPLCRTSISGTTRYP 179
             C +C+    E   L     C+H     C      +++  CP CR  +S  TRY 
Sbjct: 16  CQCGICMEILVEPVTL----PCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYH 67

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Length = 238

 Score = 43.2 bits (101), Expect = 5e-05
 Identities = 11/33 (33%), Positives = 13/33 (39%), Gaps = 2/33 (6%)

Query: 144 PNCSHAFHLDCIDIWLQSNAN--CPLCRTSISG 174
             C    HL C+  + QSNA   CP C      
Sbjct: 197 ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 39.8 bits (93), Expect = 6e-05
 Identities = 13/50 (26%), Positives = 16/50 (32%), Gaps = 5/50 (10%)

Query: 125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWL-QSNANCPLCRTSIS 173
           Y C  C               C H F   C+   L  S+  C  C+ SI 
Sbjct: 16  YKCEKCHLVLCSP----KQTECGHRFCESCMAALLSSSSPKCTACQESIV 61

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78

 Score = 39.3 bits (91), Expect = 1e-04
 Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 1/48 (2%)

Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCI-DIWLQSNANCPLCRTSIS 173
           C +C+   +  D+      C +     C   I    N  CP CR    
Sbjct: 14  CPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP 61

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 40.8 bits (95), Expect = 1e-04
 Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 5/60 (8%)

Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNA-NCPLCRTSISGTTRYPIDQIIA 185
           CV C     +     V   C H    DC+    ++   +CP CR  +        ++I+ 
Sbjct: 81  CVCCQELVYQP----VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQ 136

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56

 Score = 37.3 bits (87), Expect = 3e-04
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 7/47 (14%)

Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSIS 173
           C  C  E +     ++LP C H     C++    S   CP+C+    
Sbjct: 9   CQQCQAEAKC---PKLLP-CLHTLCSGCLE---ASGMQCPICQAPWP 48

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117

 Score = 38.7 bits (90), Expect = 4e-04
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 5/44 (11%)

Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRT 170
           C  C N  +E   L     C H F  +C+   + +   CP+C T
Sbjct: 25  CSRCTNILREPVCL---GGCEHIFCSNCVSDCIGT--GCPVCYT 63

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 39.7 bits (92), Expect = 4e-04
 Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 5/79 (6%)

Query: 107 IRDIPTFQFKREGEDMSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNAN-C 165
           + +I  +  + +    S Y C +CL   +E     V   C H F   CI   ++   + C
Sbjct: 1   MEEIQGYDVEFDPPLESKYECPICLMALREA----VQTPCGHRFCKACIIKSIRDAGHKC 56

Query: 166 PLCRTSISGTTRYPIDQII 184
           P+    +     +P +   
Sbjct: 57  PVDNEILLENQLFPDNFAK 75

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus} Length = 101

 Score = 37.9 bits (87), Expect = 5e-04
 Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 4/62 (6%)

Query: 124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWL-QSNANCPLCRTSISGTTRYPIDQ 182
           ++ C  C    +     R++P C H F  DC  +   + +  CP C   +    +     
Sbjct: 1   VHFCDKCGLPIKVY--GRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQCTRGS 57

Query: 183 II 184
           + 
Sbjct: 58  LF 59

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Length = 63

 Score = 36.7 bits (85), Expect = 5e-04
 Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 3/52 (5%)

Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFH-LDCIDIWLQSNANCPLCRTSISGTTR 177
           C +C      +D   +     H      C     ++ A+CP+C+  I    +
Sbjct: 10  CSLCEKR--PRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIK 59

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	347
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.69
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.67
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.51
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.49
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.47
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.46
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	99.45
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.42
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.4
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.36
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.34
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	99.33
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.32
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	99.29
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	99.26
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.25
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.24
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.23
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.23
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.22
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.16
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.15
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.15
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.13
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.13
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	99.1
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.08
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.07
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.06
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.06
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.05
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.05
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.04
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.03
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.02
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.02
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.01
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.01
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	99.0
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	98.97
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	98.95
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	98.93
1z6u_A	150	NP95-like ring finger protein isoform B; structura	98.91
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	98.89
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.87
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	98.85
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	98.84
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.79
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.77
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.77
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	98.77
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	98.75
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	98.72
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	98.69
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.68
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.68
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.67
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	98.66
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	98.57
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.56
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.51
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.49
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.47
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.43
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.42
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.39
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.35
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.16
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.13
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	97.98
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.83
3nw0_A	238	Non-structural maintenance of chromosomes element	97.75
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	95.86
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	93.19
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	90.58
2l5u_A	61	Chromodomain-helicase-DNA-binding protein 4; CHD4,	85.36
1we9_A	64	PHD finger family protein; structural genomics, PH	84.07
1mm2_A	61	MI2-beta; PHD, zinc finger, protein scaffold, DNA	83.97
1wil_A	89	KIAA1045 protein; ring finger domain, structural g	83.53
3u5n_A	207	E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b	82.79
2k16_A	75	Transcription initiation factor TFIID subunit 3; p	81.82
3lqh_A	183	Histone-lysine N-methyltransferase MLL; PHD finger	81.77
3o36_A	184	Transcription intermediary factor 1-alpha; TRIM24,	80.31

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.69  E-value=3e-17  Score=130.33  Aligned_cols=78  Identities=28%  Similarity=0.640  Sum_probs=68.6

Q ss_pred             cccCCCCCHHHHhcCCceeeeccC-CCCccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCC
Q 019053           96 TMWNRGLDDSVIRDIPTFQFKREG-EDMSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISG  174 (347)
Q Consensus        96 ~~~~~gl~~~~i~~lp~~~~~~~~-~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~  174 (347)
                      .....|++++.|++||.+.+.... .......|+||+++|..++.++.+| |+|.||..||+.|++.+.+||+||..+..
T Consensus        11 ~~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           11 MVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFPP   89 (91)
T ss_dssp             SSCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred             CcCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence            445689999999999999997763 3344578999999999999999999 99999999999999999999999998864

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.67  E-value=2.2e-17  Score=126.00  Aligned_cols=70  Identities=36%  Similarity=0.940  Sum_probs=62.0

Q ss_pred             HHHhcCCceeeeccCCCCccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053          105 SVIRDIPTFQFKREGEDMSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT  175 (347)
Q Consensus       105 ~~i~~lp~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~  175 (347)
                      +.|+.||.++++......+..+|+||+++|..++.++.+| |+|.||..||..|++.+.+||+||+.+.+.
T Consensus         4 ~~i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~   73 (75)
T 1x4j_A            4 GSSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS   73 (75)
T ss_dssp             CCCSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred             hhHhhCCcEEecCccccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence            3567899999987665566788999999999999999998 999999999999999999999999998754

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.51  E-value=7.2e-15  Score=105.04  Aligned_cols=50  Identities=44%  Similarity=1.115  Sum_probs=46.1

Q ss_pred             cCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCC
Q 019053          124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSIS  173 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~  173 (347)
                      ..+|+||+++|..++.+..++.|+|.||..||..|++.+.+||+||+.+.
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             SCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence            46799999999999988888779999999999999999999999999874

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=2.7e-14  Score=108.25  Aligned_cols=53  Identities=38%  Similarity=0.864  Sum_probs=48.2

Q ss_pred             ccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCCC
Q 019053          123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTT  176 (347)
Q Consensus       123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~~  176 (347)
                      ...+|+||+++|..++.+.+++ |+|.||..||..|++.+.+||+||..+....
T Consensus        14 ~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~   66 (74)
T 2ep4_A           14 LHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA   66 (74)
T ss_dssp             CSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred             CCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCccccccc
Confidence            3568999999999999999998 9999999999999999999999999987554

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.47  E-value=3.7e-14  Score=106.02  Aligned_cols=53  Identities=40%  Similarity=0.933  Sum_probs=47.9

Q ss_pred             CccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053          122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT  175 (347)
Q Consensus       122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~  175 (347)
                      ....+|+||++.|..++.++.++ |+|.||..||..|+..+.+||+||..+...
T Consensus        12 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   64 (69)
T 2kiz_A           12 DTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQ   64 (69)
T ss_dssp             TCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred             CCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence            34578999999999888899998 999999999999999999999999998754

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.46  E-value=4.5e-14  Score=108.09  Aligned_cols=54  Identities=39%  Similarity=0.912  Sum_probs=48.8

Q ss_pred             CccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCCC
Q 019053          122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTT  176 (347)
Q Consensus       122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~~  176 (347)
                      ....+|+||++.|..++.+..++ |+|.||..||..|++.+.+||+||..+....
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   66 (78)
T 2ect_A           13 GSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQN   66 (78)
T ss_dssp             SSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSC
T ss_pred             CCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCcc
Confidence            34578999999999988888998 9999999999999999999999999998654

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=3.6e-14  Score=110.24  Aligned_cols=51  Identities=29%  Similarity=0.805  Sum_probs=42.2

Q ss_pred             cCccccccccccc-----------CCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCC
Q 019053          124 IYGCVVCLNEFQE-----------QDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISG  174 (347)
Q Consensus       124 ~~~C~ICl~~~~~-----------~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~  174 (347)
                      ..+|+||+++|.+           ++.++.++.|+|.||.+||+.||+.+.+||+||+++..
T Consensus        15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~   76 (81)
T 2ecl_A           15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV   76 (81)
T ss_dssp             CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred             CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence            4568888888854           45566666799999999999999999999999998764

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.42  E-value=2.1e-13  Score=111.67  Aligned_cols=53  Identities=30%  Similarity=0.662  Sum_probs=43.0

Q ss_pred             cCcccccccccccCC---------------ceeecCCCCccccHHHHHHHHh-----cCCCCCcccCCCCCCCC
Q 019053          124 IYGCVVCLNEFQEQD---------------MLRVLPNCSHAFHLDCIDIWLQ-----SNANCPLCRTSISGTTR  177 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~---------------~~~~lp~C~H~FH~~CI~~WL~-----~~~tCPlCR~~i~~~~~  177 (347)
                      ..+|+|||++|..+.               .++.++ |+|.||..||..||.     .+.+||+||+.+.....
T Consensus        25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g   97 (114)
T 1v87_A           25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTG   97 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSS
T ss_pred             CCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCC
Confidence            468999999997653               344677 999999999999994     46789999998876543

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.40  E-value=1.7e-13  Score=97.73  Aligned_cols=50  Identities=34%  Similarity=0.825  Sum_probs=43.3

Q ss_pred             ccCcccccccccccCC-ceeecCCCCccccHHHHHHHHhcCCCCCcccCCCC
Q 019053          123 SIYGCVVCLNEFQEQD-MLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSIS  173 (347)
Q Consensus       123 ~~~~C~ICl~~~~~~~-~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~  173 (347)
                      +..+|+||+++|.+++ .+..++ |+|.||..||..|++.+.+||+||..+.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence            3568999999996644 567777 9999999999999999999999999875

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.36  E-value=4.1e-13  Score=100.51  Aligned_cols=53  Identities=25%  Similarity=0.682  Sum_probs=45.4

Q ss_pred             ccCcccccccccccC----CceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCCC
Q 019053          123 SIYGCVVCLNEFQEQ----DMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTT  176 (347)
Q Consensus       123 ~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~~  176 (347)
                      +..+|+||++.|.+.    +.+..++ |||.||..||..|++.+.+||+||..+....
T Consensus         9 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   65 (71)
T 3ng2_A            9 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR   65 (71)
T ss_dssp             TCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCCS
T ss_pred             CCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChhh
Confidence            356899999999763    4557777 9999999999999999999999999987553

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.34  E-value=6.3e-13  Score=98.64  Aligned_cols=51  Identities=25%  Similarity=0.709  Sum_probs=43.8

Q ss_pred             CccCcccccccccccC----CceeecCCCCccccHHHHHHHHhcCCCCCcccCCCC
Q 019053          122 MSIYGCVVCLNEFQEQ----DMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSIS  173 (347)
Q Consensus       122 ~~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~  173 (347)
                      .+..+|+||++.|.+.    ..+..++ |+|.||..||..|+..+.+||+||..+.
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   67 (69)
T 2ea6_A           13 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKIN   67 (69)
T ss_dssp             TCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred             CCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence            3457899999999864    3456777 9999999999999999999999999875

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=99.33  E-value=6.3e-13  Score=108.84  Aligned_cols=50  Identities=30%  Similarity=0.701  Sum_probs=42.5

Q ss_pred             ccCcccccccccccCC---------------ceeecCCCCccccHHHHHHHHhcCCCCCcccCCCC
Q 019053          123 SIYGCVVCLNEFQEQD---------------MLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSIS  173 (347)
Q Consensus       123 ~~~~C~ICl~~~~~~~---------------~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~  173 (347)
                      ....|+||++.|...-               .++.++ |+|.||..||+.||..+.+||+||+.+.
T Consensus        36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~  100 (106)
T 3dpl_R           36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE  100 (106)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence            3567999999998641               356676 9999999999999999999999999864

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.32  E-value=5e-13  Score=97.75  Aligned_cols=52  Identities=25%  Similarity=0.712  Sum_probs=44.6

Q ss_pred             cCcccccccccccC----CceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCCC
Q 019053          124 IYGCVVCLNEFQEQ----DMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTT  176 (347)
Q Consensus       124 ~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~~  176 (347)
                      ..+|+||++.+.+.    +.+..++ |||.||..||..|++.+.+||+||..+....
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   58 (64)
T 2xeu_A            3 MVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR   58 (64)
T ss_dssp             CCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred             CCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence            46799999999863    4456777 9999999999999999999999999987543

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.29  E-value=1.5e-12  Score=101.32  Aligned_cols=53  Identities=30%  Similarity=0.683  Sum_probs=44.6

Q ss_pred             ccCcccccccccccCCceeecCCCC-----ccccHHHHHHHHhcC--CCCCcccCCCCCCCC
Q 019053          123 SIYGCVVCLNEFQEQDMLRVLPNCS-----HAFHLDCIDIWLQSN--ANCPLCRTSISGTTR  177 (347)
Q Consensus       123 ~~~~C~ICl~~~~~~~~~~~lp~C~-----H~FH~~CI~~WL~~~--~tCPlCR~~i~~~~~  177 (347)
                      +...|.||+++|.+++.+ ++| |+     |.||.+||+.||..+  .+||+||..+.....
T Consensus        14 ~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~   73 (80)
T 2d8s_A           14 SQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETK   73 (80)
T ss_dssp             TSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCC
T ss_pred             CCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcc
Confidence            346899999999887776 688 96     999999999999875  489999999876543

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=99.26  E-value=7e-13  Score=110.46  Aligned_cols=51  Identities=29%  Similarity=0.692  Sum_probs=0.8

Q ss_pred             ccCcccccccccccC-------------C--ceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCC
Q 019053          123 SIYGCVVCLNEFQEQ-------------D--MLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISG  174 (347)
Q Consensus       123 ~~~~C~ICl~~~~~~-------------~--~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~  174 (347)
                      ..+.|+||+++|...             +  .+..++ |+|.||..||+.||..+.+||+||+++..
T Consensus        47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~-C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~  112 (117)
T 4a0k_B           47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEF  112 (117)
T ss_dssp             CC-----------------------------------------------------------------
T ss_pred             CCCcCeECChhhcCcChhhhcccccccccccccccCC-cCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence            346899999999752             2  223345 99999999999999999999999998653

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.25  E-value=1.7e-12  Score=97.23  Aligned_cols=50  Identities=34%  Similarity=0.960  Sum_probs=43.5

Q ss_pred             CccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCCC
Q 019053          122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTT  176 (347)
Q Consensus       122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~~  176 (347)
                      .+...|+||++.+.+    ..++ |+|.||..||..|+..+.+||+||..+....
T Consensus        13 ~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   62 (70)
T 2ecn_A           13 TDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGAN   62 (70)
T ss_dssp             CCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred             CCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence            345689999999877    5677 9999999999999999999999999987554

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.24  E-value=3.7e-12  Score=94.65  Aligned_cols=48  Identities=35%  Similarity=0.908  Sum_probs=42.1

Q ss_pred             cCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCC
Q 019053          124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISG  174 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~  174 (347)
                      ..+|+||++.+.+  ....++ |||.||..||..|++.+.+||+||..+..
T Consensus         5 ~~~C~IC~~~~~~--~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   52 (68)
T 1chc_A            5 AERCPICLEDPSN--YSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCSSCCSCCCS--CEEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred             CCCCeeCCccccC--CcEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence            4679999999875  356787 99999999999999999999999998864

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=3.5e-12  Score=96.01  Aligned_cols=50  Identities=28%  Similarity=0.629  Sum_probs=42.9

Q ss_pred             CccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053          122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT  175 (347)
Q Consensus       122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~  175 (347)
                      .+..+|+||++.+.+   ...++ |+|.||..||..|+..+.+||+||..+...
T Consensus        13 ~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~   62 (71)
T 2d8t_A           13 LTVPECAICLQTCVH---PVSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPED   62 (71)
T ss_dssp             SSCCBCSSSSSBCSS---EEEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred             CCCCCCccCCcccCC---CEEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCHh
Confidence            345689999999866   46677 999999999999999999999999998643

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=1.4e-11  Score=95.75  Aligned_cols=53  Identities=26%  Similarity=0.732  Sum_probs=45.2

Q ss_pred             CccCcccccccccccCCc-eeecCCCCccccHHHHHHHHhcC---CCCCcccCCCCCC
Q 019053          122 MSIYGCVVCLNEFQEQDM-LRVLPNCSHAFHLDCIDIWLQSN---ANCPLCRTSISGT  175 (347)
Q Consensus       122 ~~~~~C~ICl~~~~~~~~-~~~lp~C~H~FH~~CI~~WL~~~---~tCPlCR~~i~~~  175 (347)
                      .+..+|+||++.|.+.+. ...++ |||.||..||..|+..+   .+||+||..+...
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   69 (88)
T 2ct2_A           13 REVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRIT   69 (88)
T ss_dssp             CSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred             cCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence            345689999999998765 67787 99999999999999876   7899999988654

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.22  E-value=1e-11  Score=93.66  Aligned_cols=52  Identities=21%  Similarity=0.498  Sum_probs=43.2

Q ss_pred             CccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCCC
Q 019053          122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTT  176 (347)
Q Consensus       122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~~  176 (347)
                      .+...|+||++.|.+.  +.+++ |+|.||..||..|++.+.+||+||..+....
T Consensus        13 ~~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~   64 (72)
T 2djb_A           13 TPYILCSICKGYLIDA--TTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ   64 (72)
T ss_dssp             CGGGSCTTTSSCCSSC--EECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred             CCCCCCCCCChHHHCc--CEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence            3457899999999862  33346 9999999999999999999999999987553

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.16  E-value=2.2e-11  Score=93.84  Aligned_cols=47  Identities=23%  Similarity=0.583  Sum_probs=41.5

Q ss_pred             ccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCC
Q 019053          123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSIS  173 (347)
Q Consensus       123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~  173 (347)
                      ....|+||++.|.+   ..+++ |+|.||..||..|+....+||+||..+.
T Consensus        14 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (81)
T 2csy_A           14 IPFRCFICRQAFQN---PVVTK-CRHYFCESCALEHFRATPRCYICDQPTG   60 (81)
T ss_dssp             CCSBCSSSCSBCCS---EEECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred             CCCCCcCCCchhcC---eeEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence            35689999999976   45677 9999999999999999899999999985

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.15  E-value=1.4e-11  Score=104.69  Aligned_cols=46  Identities=35%  Similarity=0.925  Sum_probs=41.2

Q ss_pred             cCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCC
Q 019053          124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSIS  173 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~  173 (347)
                      ...|+||++.|.+   ...+| |||.||..||..|+..+.+||+||.++.
T Consensus        53 ~~~C~iC~~~~~~---~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   98 (138)
T 4ayc_A           53 ELQCIICSEYFIE---AVTLN-CAHSFCSYCINEWMKRKIECPICRKDIK   98 (138)
T ss_dssp             HSBCTTTCSBCSS---EEEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred             cCCCcccCcccCC---ceECC-CCCCccHHHHHHHHHcCCcCCCCCCcCC
Confidence            3579999999976   56788 9999999999999999999999999885

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.15  E-value=2.9e-11  Score=90.88  Aligned_cols=50  Identities=32%  Similarity=0.663  Sum_probs=41.5

Q ss_pred             CccCcccccccccccCCceeecCCCCccccHHHHHHHHh---cCCCCCcccCCCCCC
Q 019053          122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQ---SNANCPLCRTSISGT  175 (347)
Q Consensus       122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~---~~~tCPlCR~~i~~~  175 (347)
                      .+...|+||++.|.+   ...++ |||.||..||..|++   .+..||+||..+...
T Consensus        18 ~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   70 (73)
T 2ysl_A           18 QEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN   70 (73)
T ss_dssp             CCCCBCTTTCSBCSS---EEECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred             ccCCEeccCCcccCC---eEEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence            345689999999885   55677 999999999999997   456899999998654

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.13  E-value=4.1e-11  Score=91.02  Aligned_cols=51  Identities=22%  Similarity=0.568  Sum_probs=41.7

Q ss_pred             CccCcccccccccccCCceeecCCCCccccHHHHHHHHhcC--CCCCcccCCCCCC
Q 019053          122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSN--ANCPLCRTSISGT  175 (347)
Q Consensus       122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~--~tCPlCR~~i~~~  175 (347)
                      .+...|+||++.|.+   ...++.|||.||..||..|+..+  .+||+||..+...
T Consensus        13 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~   65 (74)
T 2yur_A           13 PDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSP   65 (74)
T ss_dssp             CGGGSCSSSCCCCTT---CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCT
T ss_pred             CCCCCCcCCChHHhC---CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCc
Confidence            345789999999986   34566699999999999999865  6899999976543

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.13  E-value=3.3e-11  Score=89.23  Aligned_cols=49  Identities=27%  Similarity=0.581  Sum_probs=40.8

Q ss_pred             ccCcccccccccccCCceeecCCCCccccHHHHHHHHh-cCCCCCcccCCCCCC
Q 019053          123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQ-SNANCPLCRTSISGT  175 (347)
Q Consensus       123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~-~~~tCPlCR~~i~~~  175 (347)
                      +...|+||++.+.+.   ..++ |||.||..||..|+. .+.+||+||..+...
T Consensus        14 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   63 (66)
T 2ecy_A           14 DKYKCEKCHLVLCSP---KQTE-CGHRFCESCMAALLSSSSPKCTACQESIVKD   63 (66)
T ss_dssp             CCEECTTTCCEESSC---CCCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred             cCCCCCCCChHhcCe---eECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence            356899999999764   3466 999999999999994 567899999998754

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=5.8e-11  Score=91.12  Aligned_cols=49  Identities=24%  Similarity=0.600  Sum_probs=41.9

Q ss_pred             cCcccccccccccCCceeecCCCCccccHHHHHHHHhcC--CCCCcccCCCCCC
Q 019053          124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSN--ANCPLCRTSISGT  175 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~--~tCPlCR~~i~~~  175 (347)
                      ..+|+||.+.+..++...   .|+|.||.+||..||+++  .+||+||+++...
T Consensus        15 i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~   65 (74)
T 2ct0_A           15 VKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE   65 (74)
T ss_dssp             SCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred             CCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence            468999999999775443   599999999999999987  7899999988643

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.08  E-value=4.5e-11  Score=99.14  Aligned_cols=53  Identities=25%  Similarity=0.682  Sum_probs=45.1

Q ss_pred             ccCcccccccccccC----CceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCCC
Q 019053          123 SIYGCVVCLNEFQEQ----DMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTT  176 (347)
Q Consensus       123 ~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~~  176 (347)
                      +..+|+||++.|.+.    +.+..++ |||.||..||..|++.+.+||+||..+....
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   62 (133)
T 4ap4_A            6 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR   62 (133)
T ss_dssp             CSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred             CCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence            356899999999764    4557787 9999999999999999999999999886543

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.07  E-value=5.6e-11  Score=95.54  Aligned_cols=48  Identities=29%  Similarity=0.889  Sum_probs=41.1

Q ss_pred             ccCcccccccccccCCceee-cCCCCccccHHHHHHHHhcC-CCCCcccCCCCC
Q 019053          123 SIYGCVVCLNEFQEQDMLRV-LPNCSHAFHLDCIDIWLQSN-ANCPLCRTSISG  174 (347)
Q Consensus       123 ~~~~C~ICl~~~~~~~~~~~-lp~C~H~FH~~CI~~WL~~~-~tCPlCR~~i~~  174 (347)
                      +...|+||++.|.+   ... ++ |||.||..||..|+... .+||+||..+..
T Consensus        21 ~~~~C~IC~~~~~~---p~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~   70 (100)
T 3lrq_A           21 EVFRCFICMEKLRD---ARLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQL   70 (100)
T ss_dssp             HHTBCTTTCSBCSS---EEECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             CCCCCccCCccccC---ccccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence            34679999999976   445 76 99999999999999987 689999999853

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.06  E-value=9.4e-11  Score=89.40  Aligned_cols=49  Identities=14%  Similarity=0.512  Sum_probs=41.9

Q ss_pred             ccCcccccccccccCCceeecCCCCccccHHHHHHHHhc-CCCCCcccCCCCCC
Q 019053          123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS-NANCPLCRTSISGT  175 (347)
Q Consensus       123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-~~tCPlCR~~i~~~  175 (347)
                      +...|+||++.|.+   ...++ |||.||..||..|+.. +.+||+||..+...
T Consensus         7 ~~~~C~IC~~~~~~---Pv~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~   56 (78)
T 1t1h_A            7 EYFRCPISLELMKD---PVIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHA   56 (78)
T ss_dssp             SSSSCTTTSCCCSS---EEEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred             ccCCCCCccccccC---CEEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence            35689999999976   45677 9999999999999987 77899999988643

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.06  E-value=1.3e-10  Score=89.22  Aligned_cols=49  Identities=31%  Similarity=0.687  Sum_probs=41.8

Q ss_pred             ccCcccccccccccCCceeecCCCCccccHHHHHHHHhc------CCCCCcccCCCCCC
Q 019053          123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS------NANCPLCRTSISGT  175 (347)
Q Consensus       123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~------~~tCPlCR~~i~~~  175 (347)
                      +...|+||++.|.+.   ..++ |+|.||..||..|+..      ...||+||..+...
T Consensus        18 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~   72 (85)
T 2ecw_A           18 EEVTCPICLELLKEP---VSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG   72 (85)
T ss_dssp             TTTSCTTTCSCCSSC---EECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred             cCCCCcCCChhhCcc---eeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence            356899999998763   4677 9999999999999987      67899999998754

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.05  E-value=1e-10  Score=96.91  Aligned_cols=53  Identities=25%  Similarity=0.674  Sum_probs=44.5

Q ss_pred             CccCcccccccccccC----CceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053          122 MSIYGCVVCLNEFQEQ----DMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT  175 (347)
Q Consensus       122 ~~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~  175 (347)
                      .+...|+||++.|.+.    .....++ |||.||..||+.|++.+.+||+||..+...
T Consensus        70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~  126 (133)
T 4ap4_A           70 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK  126 (133)
T ss_dssp             SSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             CCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence            3456799999999863    3446676 999999999999999999999999998754

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.05  E-value=1.3e-10  Score=89.27  Aligned_cols=49  Identities=27%  Similarity=0.647  Sum_probs=41.8

Q ss_pred             ccCcccccccccccCCceeecCCCCccccHHHHHHHHhc------CCCCCcccCCCCCC
Q 019053          123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS------NANCPLCRTSISGT  175 (347)
Q Consensus       123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~------~~tCPlCR~~i~~~  175 (347)
                      +...|+||++.|.+   ...++ |+|.||..||..|+..      ...||+||..+...
T Consensus        18 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~   72 (85)
T 2ecv_A           18 EEVTCPICLELLTQ---PLSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE   72 (85)
T ss_dssp             CCCCCTTTCSCCSS---CBCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred             CCCCCCCCCcccCC---ceeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence            35689999999976   34567 9999999999999987      77899999998754

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.04  E-value=1e-10  Score=93.42  Aligned_cols=47  Identities=26%  Similarity=0.732  Sum_probs=40.7

Q ss_pred             cCcccccccccccCCceeec-CCCCccccHHHHHHHHhcCCCCCcccCCCCC
Q 019053          124 IYGCVVCLNEFQEQDMLRVL-PNCSHAFHLDCIDIWLQSNANCPLCRTSISG  174 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~~~~~l-p~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~  174 (347)
                      ...|+||++.|.+   ...+ + |||.||..||..|+..+.+||+||..+..
T Consensus        22 ~~~C~IC~~~~~~---p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   69 (99)
T 2y43_A           22 LLRCGICFEYFNI---AMIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTE   69 (99)
T ss_dssp             HTBCTTTCSBCSS---EEECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred             CCCcccCChhhCC---cCEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence            4679999999986   3444 6 99999999999999988999999998863

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.03  E-value=1.9e-10  Score=84.27  Aligned_cols=43  Identities=33%  Similarity=0.695  Sum_probs=36.2

Q ss_pred             CccCcccccccccccCCceeecCCCCccccHHHHHHHHh---cCCCCCcc
Q 019053          122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQ---SNANCPLC  168 (347)
Q Consensus       122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~---~~~tCPlC  168 (347)
                      .+...|+||++.|.+   ..+++ |||.||..||..|++   .+.+||+|
T Consensus        18 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           18 QEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCBCTTTCSBCSS---CEECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             ccCCCCCcCCchhCC---eEEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            345789999999986   45677 999999999999998   45689998

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.02  E-value=5.5e-11  Score=90.58  Aligned_cols=49  Identities=29%  Similarity=0.601  Sum_probs=41.3

Q ss_pred             ccCcccccccccccCCceeecCCCCccccHHHHHHHHhc-------CCCCCcccCCCCCC
Q 019053          123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS-------NANCPLCRTSISGT  175 (347)
Q Consensus       123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-------~~tCPlCR~~i~~~  175 (347)
                      +...|+||++.|.+   ...++ |||.||..||..|+..       ...||+||..+...
T Consensus        11 ~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~   66 (79)
T 2egp_A           11 EEVTCPICLELLTE---PLSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE   66 (79)
T ss_dssp             CCCEETTTTEECSS---CCCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred             cCCCCcCCCcccCC---eeECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence            45789999999976   34577 9999999999999986       56799999998753

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.02  E-value=1.9e-10  Score=84.79  Aligned_cols=51  Identities=25%  Similarity=0.658  Sum_probs=40.9

Q ss_pred             cCccccccc-ccccCCce-eecCCCCccccHHHHHHHHhc-CCCCCcccCCCCCC
Q 019053          124 IYGCVVCLN-EFQEQDML-RVLPNCSHAFHLDCIDIWLQS-NANCPLCRTSISGT  175 (347)
Q Consensus       124 ~~~C~ICl~-~~~~~~~~-~~lp~C~H~FH~~CI~~WL~~-~~tCPlCR~~i~~~  175 (347)
                      ...|+||++ .|.+.... ..++ |||.||..||..|+.. ...||+||..+...
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   56 (65)
T 1g25_A            3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKS   56 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred             CCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence            467999999 77776543 3466 9999999999999765 46799999998754

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.01  E-value=1.7e-10  Score=93.58  Aligned_cols=49  Identities=27%  Similarity=0.701  Sum_probs=41.4

Q ss_pred             ccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCC
Q 019053          123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISG  174 (347)
Q Consensus       123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~  174 (347)
                      +...|+||++.|.+  .+..++ |||.||..||..|+..+.+||+||..+..
T Consensus        14 ~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   62 (108)
T 2ckl_A           14 PHLMCVLCGGYFID--ATTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHK   62 (108)
T ss_dssp             GGTBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred             CcCCCccCChHHhC--cCEeCC-CCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence            35679999999976  233347 99999999999999999999999998864

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.01  E-value=2.2e-10  Score=95.25  Aligned_cols=47  Identities=23%  Similarity=0.635  Sum_probs=40.6

Q ss_pred             cCcccccccccccCCceeecCCCCccccHHHHHHHHhcCC-CCCcccCCCCC
Q 019053          124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNA-NCPLCRTSISG  174 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~-tCPlCR~~i~~  174 (347)
                      ...|+||++.|.+   ...++ |||.||..||..|+..+. +||+||..+..
T Consensus        52 ~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           52 TFQCICCQELVFR---PITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR   99 (124)
T ss_dssp             HTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             CCCCCcCChHHcC---cEEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence            4679999999986   45677 999999999999998654 89999999875

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=99.00  E-value=2.6e-10  Score=99.27  Aligned_cols=49  Identities=35%  Similarity=0.736  Sum_probs=40.9

Q ss_pred             ccCcccccccccccCCceeecCCCCccccHHHHHHHHhc-CCCCCcccCCCCC
Q 019053          123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS-NANCPLCRTSISG  174 (347)
Q Consensus       123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-~~tCPlCR~~i~~  174 (347)
                      +...|+||++.|.+  .+..++ |||.||..||..|+.. +.+||+||..+..
T Consensus        53 ~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~  102 (165)
T 2ckl_B           53 SELMCPICLDMLKN--TMTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVS  102 (165)
T ss_dssp             HHHBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred             CCCCCcccChHhhC--cCEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence            34689999999986  244446 9999999999999987 7789999999853

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.97  E-value=2.6e-10  Score=81.73  Aligned_cols=42  Identities=33%  Similarity=0.895  Sum_probs=35.2

Q ss_pred             ccCcccccccccccCCceeecCCCCccccHHHHHHHH---hcCCCCCcc
Q 019053          123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWL---QSNANCPLC  168 (347)
Q Consensus       123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL---~~~~tCPlC  168 (347)
                      +...|+||++.+.+.   ..++ |+|.||..||..|+   ..+.+||+|
T Consensus        14 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           14 VEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             cCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            456899999999874   4577 99999999999995   456789998

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=98.95  E-value=5.1e-10  Score=87.95  Aligned_cols=49  Identities=22%  Similarity=0.588  Sum_probs=40.3

Q ss_pred             CccCcccccccccccCCceeecCCCCccccHHHHHHHHhcC--CCCCcccCCCC
Q 019053          122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSN--ANCPLCRTSIS  173 (347)
Q Consensus       122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~--~tCPlCR~~i~  173 (347)
                      .+...|+||++.|.+   ...++.|||.||..||..|+..+  .+||+||..+.
T Consensus        11 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~   61 (92)
T 3ztg_A           11 PDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV   61 (92)
T ss_dssp             CTTTEETTTTEECSS---CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred             CcCCCCCCCChhhcC---ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence            345789999999986   45665599999999999999754  58999999874

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.93  E-value=3.9e-10  Score=91.44  Aligned_cols=48  Identities=31%  Similarity=0.713  Sum_probs=40.0

Q ss_pred             cCcccccccccccCCceeecCCCCccccHHHHHHHHhcCC---CCCcccCCCCCC
Q 019053          124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNA---NCPLCRTSISGT  175 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~---tCPlCR~~i~~~  175 (347)
                      ...|+||++.|.+.   ..++ |||.||..||..|+..+.   +||+||..+...
T Consensus        21 ~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   71 (112)
T 1jm7_A           21 ILECPICLELIKEP---VSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR   71 (112)
T ss_dssp             HTSCSSSCCCCSSC---CBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred             CCCCcccChhhcCe---EECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence            45799999999763   4567 999999999999998654   899999988643

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=98.91  E-value=8.1e-10  Score=95.42  Aligned_cols=48  Identities=23%  Similarity=0.593  Sum_probs=41.3

Q ss_pred             cCcccccccccccCCceeecCCCCccccHHHHHHHHhcCC-CCCcccCCCCCC
Q 019053          124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNA-NCPLCRTSISGT  175 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~-tCPlCR~~i~~~  175 (347)
                      ...|+||++.|.+   ...++ |||.||..||..|+.... +||+||..+...
T Consensus        78 ~~~C~IC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~  126 (150)
T 1z6u_A           78 SFMCVCCQELVYQ---PVTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN  126 (150)
T ss_dssp             HTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred             CCEeecCChhhcC---CEEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence            4679999999976   45577 999999999999998764 799999998754

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=98.89  E-value=8.6e-10  Score=91.00  Aligned_cols=49  Identities=29%  Similarity=0.603  Sum_probs=41.5

Q ss_pred             CccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCC-CCCcccCCCCC
Q 019053          122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNA-NCPLCRTSISG  174 (347)
Q Consensus       122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~-tCPlCR~~i~~  174 (347)
                      .+...|+||++.+.+   ...++ |||.||..||..|+.... +||+||..+..
T Consensus        16 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   65 (118)
T 3hct_A           16 ESKYECPICLMALRE---AVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLE   65 (118)
T ss_dssp             CGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CCCCCCCcCChhhcC---eEECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence            345789999999976   35677 999999999999998765 89999998864

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.87  E-value=1.3e-09  Score=80.88  Aligned_cols=47  Identities=26%  Similarity=0.573  Sum_probs=39.9

Q ss_pred             ccCcccccccccccCCceeec--CCCCcc-ccHHHHHHHHhcCCCCCcccCCCC
Q 019053          123 SIYGCVVCLNEFQEQDMLRVL--PNCSHA-FHLDCIDIWLQSNANCPLCRTSIS  173 (347)
Q Consensus       123 ~~~~C~ICl~~~~~~~~~~~l--p~C~H~-FH~~CI~~WL~~~~tCPlCR~~i~  173 (347)
                      +..+|.||++.+.+   ..++  | |||. |+..|+..|.+.+..||+||+++.
T Consensus         7 ~~~~C~IC~~~~~~---~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~   56 (64)
T 2vje_A            7 AIEPCVICQGRPKN---GCIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQ   56 (64)
T ss_dssp             GGSCCTTTSSSCSC---EEEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred             CcCCCCcCCCCCCC---EEEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence            34679999998765   3444  8 9999 899999999998899999999885

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=98.85  E-value=1.2e-09  Score=89.50  Aligned_cols=48  Identities=27%  Similarity=0.508  Sum_probs=41.1

Q ss_pred             cCcccccccccccCCceeecCCCCccccHHHHHHHHhc-CCCCCcccCCCCCC
Q 019053          124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS-NANCPLCRTSISGT  175 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-~~tCPlCR~~i~~~  175 (347)
                      ...|+||++.+.+   ...++ |||.||..||..|+.. +.+||+||..+...
T Consensus        23 ~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   71 (116)
T 1rmd_A           23 SISCQICEHILAD---PVETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPT   71 (116)
T ss_dssp             HTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred             CCCCCCCCcHhcC---cEEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence            4679999999976   45577 9999999999999987 67899999988643

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=98.84  E-value=5.3e-10  Score=91.61  Aligned_cols=48  Identities=29%  Similarity=0.711  Sum_probs=40.7

Q ss_pred             ccCcccccccccccCCceeecCCCCccccHHHHHHHHhc-CCCCCcccCCCCC
Q 019053          123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS-NANCPLCRTSISG  174 (347)
Q Consensus       123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-~~tCPlCR~~i~~  174 (347)
                      +...|+||++.|.+   ...++ |||.||..||..|+.. +.+||+||..+..
T Consensus        14 ~~~~C~iC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (115)
T 3l11_A           14 SECQCGICMEILVE---PVTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS   62 (115)
T ss_dssp             HHHBCTTTCSBCSS---CEECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred             CCCCCccCCcccCc---eeEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence            34679999999976   45677 9999999999999976 5679999998863

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.79  E-value=1.1e-09  Score=78.84  Aligned_cols=47  Identities=23%  Similarity=0.642  Sum_probs=39.1

Q ss_pred             CccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053          122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT  175 (347)
Q Consensus       122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~  175 (347)
                      .+...|+||++.|.+   .+.++ |||.||..||..|   ...||+||..+...
T Consensus         4 ~~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~   50 (56)
T 1bor_A            4 FQFLRCQQCQAEAKC---PKLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLG   50 (56)
T ss_dssp             CCCSSCSSSCSSCBC---CSCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred             ccCCCceEeCCccCC---eEEcC-CCCcccHHHHccC---CCCCCcCCcEeecC
Confidence            345679999999987   46788 9999999999885   56899999988643

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.77  E-value=3.1e-09  Score=104.82  Aligned_cols=48  Identities=29%  Similarity=0.867  Sum_probs=41.9

Q ss_pred             CcccccccccccCCceeecCCCCccccHHHHHHHHh-cCCCCCcccCCCCCCC
Q 019053          125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQ-SNANCPLCRTSISGTT  176 (347)
Q Consensus       125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~-~~~tCPlCR~~i~~~~  176 (347)
                      .+|+||++.+.+   ...+| |||.||..||..|+. .+.+||+||..+....
T Consensus       333 ~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~  381 (389)
T 2y1n_A          333 QLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE  381 (389)
T ss_dssp             SBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred             CCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence            689999999865   67788 999999999999998 6788999999987543

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.77  E-value=3.7e-09  Score=78.10  Aligned_cols=49  Identities=18%  Similarity=0.474  Sum_probs=39.5

Q ss_pred             ccCcccccccccccCCceeecCCCCcc-ccHHHHHHHHhcCCCCCcccCCCC
Q 019053          123 SIYGCVVCLNEFQEQDMLRVLPNCSHA-FHLDCIDIWLQSNANCPLCRTSIS  173 (347)
Q Consensus       123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~CI~~WL~~~~tCPlCR~~i~  173 (347)
                      ....|.||++...+.. +..+| |||. |+..|+..|.+.+..||+||.++.
T Consensus         6 ~~~~C~IC~~~~~~~~-~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~   55 (63)
T 2vje_B            6 LLKPCSLCEKRPRDGN-IIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQ   55 (63)
T ss_dssp             GGSBCTTTSSSBSCEE-EEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred             cCCCCcccCCcCCCeE-EEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence            3468999999865521 22348 9998 999999999988889999999985

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=98.77  E-value=4.8e-09  Score=82.02  Aligned_cols=48  Identities=13%  Similarity=0.098  Sum_probs=42.7

Q ss_pred             ccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCC
Q 019053          123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISG  174 (347)
Q Consensus       123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~  174 (347)
                      +...|+||++.|.+   ..+++ |||.|+..||..|+..+.+||+||..+..
T Consensus        13 ~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~   60 (85)
T 2kr4_A           13 DEFRDPLMDTLMTD---PVRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTE   60 (85)
T ss_dssp             TTTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             hheECcccCchhcC---CeECC-CCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence            45789999999988   56788 99999999999999988999999988753

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=98.75  E-value=4.8e-09  Score=84.64  Aligned_cols=50  Identities=12%  Similarity=0.101  Sum_probs=43.7

Q ss_pred             CccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053          122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT  175 (347)
Q Consensus       122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~  175 (347)
                      .+...|+||++.|.+   ..+++ |||.|+..||..|+..+.+||+||.++...
T Consensus        27 p~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~   76 (100)
T 2kre_A           27 PDEFRDPLMDTLMTD---PVRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTES   76 (100)
T ss_dssp             STTTBCTTTCSBCSS---EEEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred             cHhhCCcCccCcccC---CeECC-CCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence            345789999999988   56788 999999999999999889999999988643

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=98.72  E-value=7.6e-09  Score=83.18  Aligned_cols=49  Identities=18%  Similarity=0.156  Sum_probs=43.0

Q ss_pred             ccCcccccccccccCCceeecCCCC-ccccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053          123 SIYGCVVCLNEFQEQDMLRVLPNCS-HAFHLDCIDIWLQSNANCPLCRTSISGT  175 (347)
Q Consensus       123 ~~~~C~ICl~~~~~~~~~~~lp~C~-H~FH~~CI~~WL~~~~tCPlCR~~i~~~  175 (347)
                      +...|+||++.|.+   ..+++ || |.|+..||..|+..+.+||+||.++...
T Consensus        21 ~~~~CpI~~~~m~d---PV~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~   70 (98)
T 1wgm_A           21 DEFLDPIMSTLMCD---PVVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTMD   70 (98)
T ss_dssp             TTTBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred             HhcCCcCccccccC---CeECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence            45789999999988   56777 99 9999999999999888999999988643

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=98.69  E-value=4.1e-09  Score=90.07  Aligned_cols=49  Identities=24%  Similarity=0.445  Sum_probs=41.1

Q ss_pred             CccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCC-CCCcccCCCCC
Q 019053          122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNA-NCPLCRTSISG  174 (347)
Q Consensus       122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~-tCPlCR~~i~~  174 (347)
                      .+...|+||++.|.+.   ..++ |||.||..||..|+.... +||+||.++..
T Consensus        29 ~~~~~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~   78 (141)
T 3knv_A           29 EAKYLCSACRNVLRRP---FQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGIY   78 (141)
T ss_dssp             CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred             CcCcCCCCCChhhcCc---EECC-CCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence            3457899999999874   5577 999999999999998664 89999998753

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.68  E-value=1.2e-08  Score=78.66  Aligned_cols=54  Identities=19%  Similarity=0.381  Sum_probs=41.1

Q ss_pred             CccCcccccccccccCCce-eecCCCCccccHHHHHHHHhc-CCCCCcccCCCCCCC
Q 019053          122 MSIYGCVVCLNEFQEQDML-RVLPNCSHAFHLDCIDIWLQS-NANCPLCRTSISGTT  176 (347)
Q Consensus       122 ~~~~~C~ICl~~~~~~~~~-~~lp~C~H~FH~~CI~~WL~~-~~tCPlCR~~i~~~~  176 (347)
                      .+..+|+||++.+...+.. .-++ |||.||..||..|+.. +..||+||..+....
T Consensus         9 ~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~   64 (78)
T 1e4u_A            9 EDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPEDP   64 (78)
T ss_dssp             CCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred             ccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence            3456899999998654432 2244 9999999999998743 567999999987553

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.68  E-value=5.2e-09  Score=79.51  Aligned_cols=43  Identities=26%  Similarity=0.634  Sum_probs=37.6

Q ss_pred             cCcccccccccccCCceeecCCCCcc-ccHHHHHHHHhcCCCCCcccCCCCC
Q 019053          124 IYGCVVCLNEFQEQDMLRVLPNCSHA-FHLDCIDIWLQSNANCPLCRTSISG  174 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~CI~~WL~~~~tCPlCR~~i~~  174 (347)
                      ...|.||++.+.+   ...+| |||. ||..|+..|    ..||+||..+..
T Consensus        24 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~   67 (74)
T 4ic3_A           24 EKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEAV----DKCPMCYTVITF   67 (74)
T ss_dssp             HTBCTTTSSSBCC---EEEET-TCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred             CCCCCCCCCCCCC---EEEcC-CCChhHHHHhhhcC----ccCCCcCcCccC
Confidence            4679999998776   66788 9999 999999999    789999998864

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.67  E-value=4.5e-09  Score=86.54  Aligned_cols=44  Identities=30%  Similarity=0.697  Sum_probs=38.1

Q ss_pred             cCcccccccccccCCceeec-CCCCccccHHHHHHHHhcCCCCCcccCCCC
Q 019053          124 IYGCVVCLNEFQEQDMLRVL-PNCSHAFHLDCIDIWLQSNANCPLCRTSIS  173 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~~~~~l-p~C~H~FH~~CI~~WL~~~~tCPlCR~~i~  173 (347)
                      ...|+||++.|.+   ...+ + |||.||..||..|+.  ..||+||..+.
T Consensus        22 ~~~C~IC~~~~~~---pv~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~   66 (117)
T 1jm7_B           22 LLRCSRCTNILRE---PVCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAW   66 (117)
T ss_dssp             TTSCSSSCSCCSS---CBCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred             CCCCCCCChHhhC---ccEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence            4679999999976   4555 6 999999999999997  78999999874

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=98.66  E-value=4.1e-09  Score=101.92  Aligned_cols=53  Identities=19%  Similarity=0.553  Sum_probs=40.7

Q ss_pred             CccCcccccccccccCCce----eecCCCCccccHHHHHHHHhcC-----------CCCCcccCCCCC
Q 019053          122 MSIYGCVVCLNEFQEQDML----RVLPNCSHAFHLDCIDIWLQSN-----------ANCPLCRTSISG  174 (347)
Q Consensus       122 ~~~~~C~ICl~~~~~~~~~----~~lp~C~H~FH~~CI~~WL~~~-----------~tCPlCR~~i~~  174 (347)
                      ....+|+||++.+.++..+    ...++|+|.||..||.+||++.           .+||+||++|..
T Consensus       306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~  373 (381)
T 3k1l_B          306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST  373 (381)
T ss_dssp             CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred             cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence            3457899999999873322    2233599999999999999753           359999998863

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=98.57  E-value=3.3e-08  Score=72.56  Aligned_cols=47  Identities=23%  Similarity=0.656  Sum_probs=36.5

Q ss_pred             ccCcccccccccccCCceeecCCCC--c---cccHHHHHHHHhc--CCCCCcccCCCC
Q 019053          123 SIYGCVVCLNEFQEQDMLRVLPNCS--H---AFHLDCIDIWLQS--NANCPLCRTSIS  173 (347)
Q Consensus       123 ~~~~C~ICl~~~~~~~~~~~lp~C~--H---~FH~~CI~~WL~~--~~tCPlCR~~i~  173 (347)
                      +...|.||+++.  ++.+ ++| |.  |   .||..||+.|+..  +.+||+|+..+.
T Consensus         5 ~~~~CrIC~~~~--~~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            5 DVPVCWICNEEL--GNER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             SCCEETTTTEEC--SCCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCEeEEeecCC--CCce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            456899999983  3334 577 65  4   8999999999974  577999998764

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.56  E-value=3.6e-08  Score=85.96  Aligned_cols=50  Identities=28%  Similarity=0.563  Sum_probs=41.6

Q ss_pred             CCccCcccccccccccCCceeecCCCCccccHHHHHHHHhcC-CCCCcccCCCCC
Q 019053          121 DMSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSN-ANCPLCRTSISG  174 (347)
Q Consensus       121 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~-~tCPlCR~~i~~  174 (347)
                      ..+...|+||++.|.+.   ..++ |||.||..||..|+... .+||+||..+..
T Consensus        15 ~~~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   65 (170)
T 3hcs_A           15 LESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLE   65 (170)
T ss_dssp             CCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CCCCCCCCCCChhhcCc---EECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence            34457899999999873   5577 99999999999999764 489999998864

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.51  E-value=5.2e-08  Score=90.18  Aligned_cols=48  Identities=15%  Similarity=0.222  Sum_probs=41.3

Q ss_pred             ccCcccccccccccCCceeecCCCCccccHHHHHHHHhc-CCCCCcccCCCCC
Q 019053          123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS-NANCPLCRTSISG  174 (347)
Q Consensus       123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-~~tCPlCR~~i~~  174 (347)
                      +...|+||++.|.+   ..++| |||.||..||..|+.. +.+||+||.++..
T Consensus       207 ~~~~c~i~~~~~~d---Pv~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~  255 (281)
T 2c2l_A          207 DYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQ  255 (281)
T ss_dssp             STTBCTTTCSBCSS---EEECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred             cccCCcCcCCHhcC---CeECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence            45789999999988   56788 9999999999999986 4459999998853

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.49  E-value=6.4e-08  Score=76.85  Aligned_cols=48  Identities=27%  Similarity=0.520  Sum_probs=38.9

Q ss_pred             ccCcccccccccccCCceeecCCCCccccHHHHHHHHhcC------CCCCc--ccCC-CC
Q 019053          123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSN------ANCPL--CRTS-IS  173 (347)
Q Consensus       123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~------~tCPl--CR~~-i~  173 (347)
                      ....|+||++.|.+   ..+++.|||.|+..||..|+..+      .+||+  |+.. +.
T Consensus         6 ~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~   62 (94)
T 2yu4_A            6 SGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR   62 (94)
T ss_dssp             SCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBC
T ss_pred             cEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccC
Confidence            34679999999987   45564599999999999999764      48999  9866 43

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.47  E-value=7.1e-08  Score=73.22  Aligned_cols=44  Identities=25%  Similarity=0.621  Sum_probs=36.6

Q ss_pred             cCcccccccccccCCceeecCCCCcc-ccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053          124 IYGCVVCLNEFQEQDMLRVLPNCSHA-FHLDCIDIWLQSNANCPLCRTSISGT  175 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~CI~~WL~~~~tCPlCR~~i~~~  175 (347)
                      ...|.||++.+.+   ...+| |||. ||..|+..+    ..||+||..+...
T Consensus        25 ~~~C~IC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~   69 (75)
T 2ecg_A           25 EKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEAV----DKCPMCYTVITFK   69 (75)
T ss_dssp             HHSCSSSCSSCCC---BCCSS-SCCCCBCHHHHHHC----SBCTTTCCBCCCC
T ss_pred             CCCCCcCCCCCCC---EEEec-CCCHHHHHHHhhCC----CCCccCCceecCc
Confidence            4579999999766   56788 9999 999999653    7899999998754

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.43  E-value=1e-07  Score=75.25  Aligned_cols=47  Identities=26%  Similarity=0.697  Sum_probs=39.4

Q ss_pred             cCcccccccccccCCceeecCCCCccccHHHHHHHHhc--------CCCCCc--ccCC
Q 019053          124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS--------NANCPL--CRTS  171 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~--------~~tCPl--CR~~  171 (347)
                      ..+|+||++++...+.+.+.+ |+|.||.+|+..|+..        ...||.  |+..
T Consensus         5 ~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            5 SSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            467999999998877776667 9999999999999863        136999  9887

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.42  E-value=1.5e-07  Score=70.49  Aligned_cols=45  Identities=31%  Similarity=0.755  Sum_probs=37.8

Q ss_pred             ccCcccccccccccCCceeecCCCCcc-ccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053          123 SIYGCVVCLNEFQEQDMLRVLPNCSHA-FHLDCIDIWLQSNANCPLCRTSISGT  175 (347)
Q Consensus       123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~CI~~WL~~~~tCPlCR~~i~~~  175 (347)
                      +...|.||++...+   +..+| |+|. |+..|+..    ...||+||..|...
T Consensus        14 ~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~~   59 (68)
T 2ea5_A           14 NSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQES   59 (68)
T ss_dssp             CSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred             CCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcchhce
Confidence            34679999998765   77888 9999 99999984    47899999998754

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.39  E-value=9e-08  Score=73.79  Aligned_cols=44  Identities=27%  Similarity=0.663  Sum_probs=37.8

Q ss_pred             cCcccccccccccCCceeecCCCCcc-ccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053          124 IYGCVVCLNEFQEQDMLRVLPNCSHA-FHLDCIDIWLQSNANCPLCRTSISGT  175 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~CI~~WL~~~~tCPlCR~~i~~~  175 (347)
                      ...|.||++.+.+   +..+| |||. |+..|+..|    ..||+||..+...
T Consensus        18 ~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~   62 (79)
T 2yho_A           18 AMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEHV   62 (79)
T ss_dssp             HTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred             CCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence            4579999998766   67888 9999 999999988    4899999998754

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.35  E-value=2.7e-07  Score=82.01  Aligned_cols=49  Identities=14%  Similarity=0.174  Sum_probs=41.7

Q ss_pred             CccCcccccccccccCCceeecCCCCccccHHHHHHHHhcC-CCCCcccCCCCC
Q 019053          122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSN-ANCPLCRTSISG  174 (347)
Q Consensus       122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~-~tCPlCR~~i~~  174 (347)
                      .+...|+||++.|.+   ..++| |||.|+..||..|+..+ .+||+|+.++..
T Consensus       104 p~~f~CPI~~elm~D---PV~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~  153 (179)
T 2f42_A          104 PDYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQ  153 (179)
T ss_dssp             CGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             cHhhcccCccccCCC---CeECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence            456789999999987   56777 99999999999999864 579999988754

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.16  E-value=6.3e-07  Score=65.84  Aligned_cols=49  Identities=12%  Similarity=0.230  Sum_probs=41.5

Q ss_pred             CcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCCC
Q 019053          125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTT  176 (347)
Q Consensus       125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~~  176 (347)
                      ..|+||++.+.+   ..+++.|||+|...||.+||..+.+||+++.++....
T Consensus         4 ~~CpIs~~~m~d---PV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~   52 (61)
T 2bay_A            4 MLCAISGKVPRR---PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEE   52 (61)
T ss_dssp             CCCTTTCSCCSS---EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGG
T ss_pred             EEecCCCCCCCC---CEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhh
Confidence            569999999986   4556239999999999999998889999999887544

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.13  E-value=4.7e-07  Score=88.14  Aligned_cols=44  Identities=32%  Similarity=0.781  Sum_probs=38.1

Q ss_pred             cCcccccccccccCCceeecCCCCcc-ccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053          124 IYGCVVCLNEFQEQDMLRVLPNCSHA-FHLDCIDIWLQSNANCPLCRTSISGT  175 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~CI~~WL~~~~tCPlCR~~i~~~  175 (347)
                      ...|+||++.+.+   +..+| |||. ||..|+..|    ..||+||..+...
T Consensus       295 ~~~C~IC~~~~~~---~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~~  339 (345)
T 3t6p_A          295 ERTCKVCMDKEVS---VVFIP-CGHLVVCQECAPSL----RKCPICRGIIKGT  339 (345)
T ss_dssp             TCBCTTTSSSBCC---EEEET-TCCEEECTTTGGGC----SBCTTTCCBCCEE
T ss_pred             CCCCCccCCcCCc---eEEcC-CCChhHhHHHHhcC----CcCCCCCCCccCe
Confidence            4679999999876   67788 9999 999999998    7899999998643

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=97.98  E-value=2.4e-06  Score=80.02  Aligned_cols=47  Identities=28%  Similarity=0.601  Sum_probs=38.5

Q ss_pred             cCcccccccccccCCceeecCCCCccccHHHHHHHHhcC--CCCCc--ccCCCC
Q 019053          124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSN--ANCPL--CRTSIS  173 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~--~tCPl--CR~~i~  173 (347)
                      ...|+||++.|.+.  ++.+. |||.|+..||..|+..+  .+||+  |+..+.
T Consensus       181 el~CPIcl~~f~DP--Vts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~  231 (267)
T 3htk_C          181 ELTCPITCKPYEAP--LISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS  231 (267)
T ss_dssp             CSBCTTTSSBCSSE--EEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred             eeECcCccCcccCC--eeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence            46899999999773  44445 99999999999999764  46999  998775

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.83  E-value=9.3e-06  Score=65.16  Aligned_cols=47  Identities=26%  Similarity=0.581  Sum_probs=37.9

Q ss_pred             cccccccccccCCceeecCCCCccccHHHHHHHHh-cCCCCCcccCCCCCC
Q 019053          126 GCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQ-SNANCPLCRTSISGT  175 (347)
Q Consensus       126 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~-~~~tCPlCR~~i~~~  175 (347)
                      -|.+|--.+..  ..|++| |+|+|+.+|+..|.+ ..++||.|+.+|...
T Consensus         3 fC~~C~~Pi~i--ygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV   50 (101)
T 3vk6_A            3 FCDKCGLPIKV--YGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQRI   50 (101)
T ss_dssp             BCTTTCSBCSE--EEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred             ecCccCCCeEE--Eeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence            47788666554  478888 999999999999985 467899999988643

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=97.75  E-value=2.3e-05  Score=72.42  Aligned_cols=49  Identities=27%  Similarity=0.608  Sum_probs=40.6

Q ss_pred             cCcccccccccccCCceeecCCCCccccHHHHHHHHhcCC--CCCcccCCCCCC
Q 019053          124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNA--NCPLCRTSISGT  175 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~--tCPlCR~~i~~~  175 (347)
                      ..+|+||.+....+..+   ++|+|.||..|+..|++.+.  .||.|+..+...
T Consensus       180 i~~C~iC~~iv~~g~~C---~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~  230 (238)
T 3nw0_A          180 VKICNICHSLLIQGQSC---ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE  230 (238)
T ss_dssp             CCBCTTTCSBCSSCEEC---SSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred             CCcCcchhhHHhCCccc---CccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence            57899999999876433   45999999999999998754  799999987654

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=93.19  E-value=0.071  Score=39.34  Aligned_cols=45  Identities=24%  Similarity=0.380  Sum_probs=32.8

Q ss_pred             cCcccccccccccCCceeecCCCCccccHHHHHHHHhcC----CCCCcccCCC
Q 019053          124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSN----ANCPLCRTSI  172 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~----~tCPlCR~~i  172 (347)
                      ...|.||.+.   + .+..-..|...||..|++..|..-    -.||.|....
T Consensus        12 ~~~C~vC~~~---~-~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~   60 (66)
T 2lri_C           12 GARCGVCGDG---T-DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV   60 (66)
T ss_dssp             TCCCTTTSCC---T-TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred             CCCcCCCCCC---C-eEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence            3569999743   3 344555699999999999888653    2599997643

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=90.58  E-value=0.14  Score=39.96  Aligned_cols=33  Identities=12%  Similarity=0.393  Sum_probs=24.6

Q ss_pred             CcccccccccccCCceeecCCCCccccHHHHHHH
Q 019053          125 YGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIW  158 (347)
Q Consensus       125 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~W  158 (347)
                      ..|.||++++.......-+. |+|.|+..|+..|
T Consensus         4 ~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~   36 (101)
T 2jun_A            4 VLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT   36 (101)
T ss_dssp             CBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred             CCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence            56999998754433333365 9999999999983

>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}

Probab=85.36  E-value=0.47  Score=34.11  Aligned_cols=44  Identities=25%  Similarity=0.610  Sum_probs=30.8

Q ss_pred             ccCcccccccccccCCceeecCCCCccccHHHHHHHHhc----CCCCCcccC
Q 019053          123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS----NANCPLCRT  170 (347)
Q Consensus       123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~----~~tCPlCR~  170 (347)
                      ....|.||...   + .+..-..|...||..|+..=+..    .-.||.|+.
T Consensus        10 ~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~   57 (61)
T 2l5u_A           10 HQDYCEVCQQG---G-EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK   57 (61)
T ss_dssp             CCSSCTTTSCC---S-SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred             CCCCCccCCCC---C-cEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence            34679999863   3 34445568889999999985533    234999964

>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=84.07  E-value=0.29  Score=35.29  Aligned_cols=49  Identities=22%  Similarity=0.484  Sum_probs=33.9

Q ss_pred             ccCcccccccccccCCceeecCCCCccccHHHHHHHHh-----cCCCCCcccCC
Q 019053          123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQ-----SNANCPLCRTS  171 (347)
Q Consensus       123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~-----~~~tCPlCR~~  171 (347)
                      +...|+||...+.++...+.--.|..-||..|+..-..     ....||.|+..
T Consensus         5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k   58 (64)
T 1we9_A            5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK   58 (64)
T ss_dssp             SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred             CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence            34679999998865544444445888899999875432     24569999653

>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A

Probab=83.97  E-value=0.28  Score=35.32  Aligned_cols=47  Identities=23%  Similarity=0.536  Sum_probs=31.3

Q ss_pred             CccCcccccccccccCCceeecCCCCccccHHHHHHHHhc----CCCCCcccCCC
Q 019053          122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS----NANCPLCRTSI  172 (347)
Q Consensus       122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~----~~tCPlCR~~i  172 (347)
                      .....|.||.+.   + .+..-..|...||..|+..-|..    .-.||.|+...
T Consensus         7 ~~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~   57 (61)
T 1mm2_A            7 HHMEFCRVCKDG---G-ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA   57 (61)
T ss_dssp             SSCSSCTTTCCC---S-SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred             CCCCcCCCCCCC---C-CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence            345679999752   3 34444458889999999865433    22499997654

>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3

Probab=83.53  E-value=0.97  Score=34.98  Aligned_cols=34  Identities=21%  Similarity=0.465  Sum_probs=22.4

Q ss_pred             ccCcccccccccccCCceeecCCCCccccHHHHHHH
Q 019053          123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIW  158 (347)
Q Consensus       123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~W  158 (347)
                      .+..|.||- .+..++.. ---.|+-+||..|+..-
T Consensus        14 ~D~~C~VC~-~~t~~~l~-pCRvC~RvfH~~CL~r~   47 (89)
T 1wil_A           14 NDEMCDVCE-VWTAESLF-PCRVCTRVFHDGCLRRM   47 (89)
T ss_dssp             CSCCCTTTC-CCCSSCCS-SCSSSSSCCCHHHHHHH
T ss_pred             CCcccCccc-ccccccee-ccccccccccHhhcccc
Confidence            456799994 33333321 11138999999999996

>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*

Probab=82.79  E-value=0.29  Score=43.61  Aligned_cols=46  Identities=33%  Similarity=0.468  Sum_probs=32.7

Q ss_pred             ccCcccccccccccCCceeecCCCCccccHHHHHHHHhcC----CCCCcccCCC
Q 019053          123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSN----ANCPLCRTSI  172 (347)
Q Consensus       123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~----~tCPlCR~~i  172 (347)
                      ....|.+|...   + .+.....|...||..|+.+.|...    -.||.|+..-
T Consensus         6 ~~~~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~   55 (207)
T 3u5n_A            6 NEDWCAVCQNG---G-DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG   55 (207)
T ss_dssp             SCSSBTTTCCC---E-EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred             CCCCCCCCCCC---C-ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence            34679999743   3 355555688999999998876542    3599997644

>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*

Probab=81.82  E-value=0.45  Score=35.40  Aligned_cols=53  Identities=21%  Similarity=0.429  Sum_probs=36.0

Q ss_pred             CccCcccccccccccCCceeecCCCCccccHHHHHHHHhc----CCCCCcccCCCCCC
Q 019053          122 MSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS----NANCPLCRTSISGT  175 (347)
Q Consensus       122 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~----~~tCPlCR~~i~~~  175 (347)
                      .+...|.||..... ++....--.|.-.||..|+..-+..    .-.||.|+..+...
T Consensus        16 ~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k~   72 (75)
T 2k16_A           16 NQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKD   72 (75)
T ss_dssp             CEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCSC
T ss_pred             CCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhhc
Confidence            33456999987753 4434444468889999999865532    34599998766543

>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A

Probab=81.77  E-value=0.52  Score=41.53  Aligned_cols=47  Identities=19%  Similarity=0.458  Sum_probs=33.9

Q ss_pred             CcccccccccccCCc---eeecCCCCccccHHHHHHH------Hh-----cCCCCCcccCC
Q 019053          125 YGCVVCLNEFQEQDM---LRVLPNCSHAFHLDCIDIW------LQ-----SNANCPLCRTS  171 (347)
Q Consensus       125 ~~C~ICl~~~~~~~~---~~~lp~C~H~FH~~CI~~W------L~-----~~~tCPlCR~~  171 (347)
                      ..|+||...|.+++.   .+....|..-||..|+..=      +.     ..-.||.|+..
T Consensus         3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~   63 (183)
T 3lqh_A            3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER   63 (183)
T ss_dssp             CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred             CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence            459999999988763   4444568999999997431      11     15679999654

>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A

Probab=80.31  E-value=0.56  Score=40.83  Aligned_cols=46  Identities=30%  Similarity=0.526  Sum_probs=32.5

Q ss_pred             cCcccccccccccCCceeecCCCCccccHHHHHHHHhcC----CCCCcccCCCC
Q 019053          124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSN----ANCPLCRTSIS  173 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~----~tCPlCR~~i~  173 (347)
                      ...|.||...   |+ +.....|.-.||..|+.+-|...    -.||.|+..-.
T Consensus         4 ~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~   53 (184)
T 3o36_A            4 EDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK   53 (184)
T ss_dssp             CSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred             CCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence            4569999744   44 44555688999999998776542    34999976543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	347
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	8e-19
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	3e-12
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	1e-11
d3dplr1	88	g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S	9e-11
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	3e-10
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	3e-09
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	2e-08
d1v87a_	114	g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mou	5e-08
d1vyxa_	60	g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do	4e-07
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	6e-06
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	1e-05
d1wima_	94	g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA016	2e-04
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	4e-04
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	0.001

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 76.8 bits (189), Expect = 8e-19
 Identities = 22/46 (47%), Positives = 32/46 (69%)

Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSI 172
           C VCL E ++ +  R LP C H FH +C+D+WL S++ CPLCR ++
Sbjct: 8   CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 59.2 bits (143), Expect = 3e-12
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 3/47 (6%)

Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSIS 173
           C +CL +        +   C HAF   CI  W++ N  CPLC+  + 
Sbjct: 8   CPICLEDPSNYS---MALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.7 bits (139), Expect = 1e-11
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 5/57 (8%)

Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNAN-CPLCRTSISGTTRYPIDQ 182
           C +C    ++   +++ P C H     C+  W +S    CP CR  I GT    +D 
Sbjct: 26  CKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIVVDP 78

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (133), Expect = 9e-11
 Identities = 14/54 (25%), Positives = 19/54 (35%)

Query: 117 REGEDMSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRT 170
           R         C         ++       C+HAFH  CI  WL++   CPL   
Sbjct: 28  RNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNR 81

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (127), Expect = 3e-10
 Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 1/48 (2%)

Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQ-SNANCPLCRTSIS 173
           C +C+   +  D+      C +     C        N  CP CR    
Sbjct: 3   CPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP 50

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (120), Expect = 3e-09
 Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 127 CVVCLNEFQEQDMLRVLPN-CSHAFHLDCIDIWLQSNAN-CPLCRTSIS 173
           C  C         L+++ N C H     C+D+     A  CP C T + 
Sbjct: 6   CPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (113), Expect = 2e-08
 Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 7/53 (13%)

Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTTRYP 179
           C  C  E +     ++LP C H     C++        CP+C+         P
Sbjct: 9   CQQCQAEAKC---PKLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLGADTP 54

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.5 bits (114), Expect = 5e-08
 Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 6/80 (7%)

Query: 118 EGEDMSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNAN-----CPLCRTSI 172
           E   ++     +  ++     ++  L  CSHAFHL C+     +        CP C+T  
Sbjct: 33  EKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIY 92

Query: 173 -SGTTRYPIDQIIAPRPSPQ 191
              T   P  ++   R  P 
Sbjct: 93  GEKTGTQPWGKMEVFRSGPS 112

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

 Score = 44.5 bits (104), Expect = 4e-07
 Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 5/59 (8%)

Query: 118 EGEDMSIYGCVVCLNEFQEQDMLRVLP-NCSHAFHLDCIDIWLQSNAN--CPLCRTSIS 173
           E ED+ +  C +C  E   +              H  C+  WL  + N  C +C    +
Sbjct: 2   EDEDVPV--CWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (99), Expect = 6e-06
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 7/50 (14%)

Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNAN---CPLCRTSIS 173
           C +CL   +E     V   C H F   C+   L        CPLC+  I+
Sbjct: 24  CPICLELIKE----PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.1 bits (96), Expect = 1e-05
 Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 5/48 (10%)

Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS-NANCPLCRTSIS 173
           C +C +   +     V  +C H F   CI   L+   + CP CR    
Sbjct: 26  CQICEHILADP----VETSCKHLFCRICILRCLKVMGSYCPSCRYPCF 69

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (86), Expect = 2e-04
 Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 9/51 (17%)

Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS--------NANCPLCR 169
           C +CL E+  + M   +  C   F   C+  +++           +CP   
Sbjct: 8   CKLCLGEYPVEQMTT-IAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA 57

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 4e-04
 Identities = 12/47 (25%), Positives = 16/47 (34%), Gaps = 5/47 (10%)

Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSIS 173
           C  C N          L  C H F  +C+   +     CP+C T   
Sbjct: 25  CSRCTNIL---REPVCLGGCEHIFCSNCVSDCI--GTGCPVCYTPAW 66

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.7 bits (79), Expect = 0.001
 Identities = 7/54 (12%), Positives = 17/54 (31%), Gaps = 3/54 (5%)

Query: 127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTTRYPI 180
           C +     +   +    P     F    ++ +++   N P+    +S      I
Sbjct: 3   CAISGKVPRRPVLS---PKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEI 53

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	347
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.65
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.41
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.4
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	99.39
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	99.38
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.34
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.26
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.18
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.1
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.03
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.0
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.93
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	98.8
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	98.74
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	98.72
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.61
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.42
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	90.2
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	89.84
d1mm2a_	61	Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606	85.0
d1wila_	89	Hypothetical protein KIAA1045 {Human (Homo sapiens	83.99
d1wepa_	79	PHD finger protein 8 {Mouse (Mus musculus) [TaxId:	81.42

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.65  E-value=2.4e-17  Score=118.01  Aligned_cols=50  Identities=44%  Similarity=1.115  Sum_probs=46.3

Q ss_pred             cCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCC
Q 019053          124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSIS  173 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~  173 (347)
                      ..+|+|||++|..++.+..++.|+|.||.+||..||+.+.+||+||++|.
T Consensus         5 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~   54 (55)
T d1iyma_           5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             SCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCCcCCCCCCEeE
Confidence            45799999999999999888779999999999999999999999999874

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.41  E-value=4.4e-14  Score=104.72  Aligned_cols=48  Identities=35%  Similarity=0.908  Sum_probs=41.9

Q ss_pred             cCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCC
Q 019053          124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISG  174 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~  174 (347)
                      .++|+||++.|.+  .++.+| |||.||.+||..|++.+.+||+||+++..
T Consensus         5 ~d~C~IC~~~~~~--~~~~~~-C~H~Fc~~Ci~~w~~~~~~CP~CR~~i~~   52 (68)
T d1chca_           5 AERCPICLEDPSN--YSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCSSCCSCCCS--CEEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred             CCCCccCCcCccC--CcEEeC-CCCcCcHHHHHHHHHhCCcCCCCCcchHh
Confidence            4579999999965  356787 99999999999999999999999998753

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=4.7e-14  Score=99.37  Aligned_cols=48  Identities=19%  Similarity=0.443  Sum_probs=40.7

Q ss_pred             cccccccccccCCce-eecCCCCccccHHHHHHHHhcC-CCCCcccCCCCC
Q 019053          126 GCVVCLNEFQEQDML-RVLPNCSHAFHLDCIDIWLQSN-ANCPLCRTSISG  174 (347)
Q Consensus       126 ~C~ICl~~~~~~~~~-~~lp~C~H~FH~~CI~~WL~~~-~tCPlCR~~i~~  174 (347)
                      +|+||+++|..++.. ..++ |||.||.+||+.|++.. .+||+||+++..
T Consensus         2 eCpICl~~~~~~~~~~~~~~-CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSS-SSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCcCCChhhhCCCceEEecC-CCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence            699999999877654 4556 99999999999999864 469999999864

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=2e-13  Score=110.40  Aligned_cols=52  Identities=31%  Similarity=0.659  Sum_probs=41.1

Q ss_pred             cCcccccccccccC---------------CceeecCCCCccccHHHHHHHHhcC-----CCCCcccCCCCCCC
Q 019053          124 IYGCVVCLNEFQEQ---------------DMLRVLPNCSHAFHLDCIDIWLQSN-----ANCPLCRTSISGTT  176 (347)
Q Consensus       124 ~~~C~ICl~~~~~~---------------~~~~~lp~C~H~FH~~CI~~WL~~~-----~tCPlCR~~i~~~~  176 (347)
                      ..+|+||+++|...               ..+.+++ |+|.||..||+.||+..     .+||+||+.+....
T Consensus        25 ~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~-CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~~~   96 (114)
T d1v87a_          25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKT   96 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCS
T ss_pred             cccccchhheecccccccccccccccccccceEECC-CCChhhHHHHHHHHHhcCcCCCCccccccchhccCc
Confidence            46799999998642               2356676 99999999999999753     47999999886554

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.2e-13  Score=107.45  Aligned_cols=50  Identities=30%  Similarity=0.673  Sum_probs=41.9

Q ss_pred             cCcccccccccccCC---------------ceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCC
Q 019053          124 IYGCVVCLNEFQEQD---------------MLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISG  174 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~---------------~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~  174 (347)
                      .++|+||++++....               .+..++ |+|.||.+||..||+.+.+||+||+++..
T Consensus        21 ~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~   85 (88)
T d3dplr1          21 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEF   85 (88)
T ss_dssp             SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred             CCcCEEccchhhCccccccccccccccccCCeEEcc-ccCcccHHHHHHHHHHCCcCCCCCCcccc
Confidence            456999999886533               256676 99999999999999999999999998753

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=5.4e-13  Score=101.68  Aligned_cols=51  Identities=29%  Similarity=0.825  Sum_probs=43.1

Q ss_pred             cCcccccccccccCCceeecCCCCccccHHHHHHHHhc-CCCCCcccCCCCCCCCC
Q 019053          124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS-NANCPLCRTSISGTTRY  178 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-~~tCPlCR~~i~~~~~~  178 (347)
                      ...|+||++.+.+   .+++| |||.||..||..||.. +++||+||..|......
T Consensus        23 ~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~~i   74 (79)
T d1fbva4          23 FQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPI   74 (79)
T ss_dssp             TTBCTTTSSSBCC---EECSS-SCCEECHHHHHHHHHTTCCSCTTTCCCCCCCCCS
T ss_pred             CCCCccCCCcCCC---eEEeC-CCCeeeHHHHHHHHHHCcCcCCCCCcCccCCcee
Confidence            3569999998876   67888 9999999999999975 56799999999866543

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.5e-12  Score=95.58  Aligned_cols=51  Identities=27%  Similarity=0.589  Sum_probs=40.4

Q ss_pred             cCcccccccccccC-C-ceeecCCCCccccHHHHHHHHhc-CCCCCcccCCCCCC
Q 019053          124 IYGCVVCLNEFQEQ-D-MLRVLPNCSHAFHLDCIDIWLQS-NANCPLCRTSISGT  175 (347)
Q Consensus       124 ~~~C~ICl~~~~~~-~-~~~~lp~C~H~FH~~CI~~WL~~-~~tCPlCR~~i~~~  175 (347)
                      +..|+||++++..+ + .+.+++ |||.||.+||..|++. +.+||+||..+...
T Consensus         3 d~~CpIC~~~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~   56 (65)
T d1g25a_           3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKS   56 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred             CCCCCcCCceeecCCceEEEeCc-cChHhhHHHHHHHhCcCcCCCCCCCcCcccc
Confidence            46899999987544 3 345566 9999999999999965 45799999988643

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.18  E-value=2.9e-12  Score=91.29  Aligned_cols=48  Identities=13%  Similarity=0.236  Sum_probs=41.7

Q ss_pred             cccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCCC
Q 019053          126 GCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTT  176 (347)
Q Consensus       126 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~~  176 (347)
                      .|+||++.+++   ...++.|||+||.+||.+||+.+.+||+||.++....
T Consensus         2 ~C~Ic~~~~~~---Pv~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l~~~d   49 (56)
T d2baya1           2 LCAISGKVPRR---PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEE   49 (56)
T ss_dssp             CCTTTCSCCSS---EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGG
T ss_pred             CCccCCchHHh---cCccCCCCCcccHHHHHHHHhhccCCCccCCcCCHHh
Confidence            49999999976   4455569999999999999999999999999987654

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=8.3e-12  Score=89.03  Aligned_cols=47  Identities=23%  Similarity=0.632  Sum_probs=39.6

Q ss_pred             cCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCCCC
Q 019053          124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGTTR  177 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~~~  177 (347)
                      ..+|+||++.|.+   .+++| |||.||..||+.|   +.+||+||+++.....
T Consensus         6 ~l~C~IC~~~~~~---p~~lp-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~~   52 (56)
T d1bora_           6 FLRCQQCQAEAKC---PKLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLGAD   52 (56)
T ss_dssp             CSSCSSSCSSCBC---CSCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCCSS
T ss_pred             CCCCcccCcccCC---CEEec-CCCHHhHHHHHcC---CCcCcCCCCcccCCCC
Confidence            3589999999976   56788 9999999999877   5679999999976544

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.03  E-value=5.9e-11  Score=91.75  Aligned_cols=48  Identities=27%  Similarity=0.490  Sum_probs=40.9

Q ss_pred             cCcccccccccccCCceeecCCCCccccHHHHHHHHhcC-CCCCcccCCCCCC
Q 019053          124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSN-ANCPLCRTSISGT  175 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~-~tCPlCR~~i~~~  175 (347)
                      ...|+||++.|.+   ..+++ |||.||..||..|++.+ .+||+||.++...
T Consensus        23 ~l~C~IC~~~~~~---pv~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~   71 (86)
T d1rmda2          23 SISCQICEHILAD---PVETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPT   71 (86)
T ss_dssp             HTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred             CcCCccCCcchhc---ceecC-CCChhhHHHHHHHHhhCCCcCcccCCCCChh
Confidence            3579999999876   56787 99999999999999754 5799999988644

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=8.3e-11  Score=93.30  Aligned_cols=47  Identities=32%  Similarity=0.714  Sum_probs=39.3

Q ss_pred             cCcccccccccccCCceeecCCCCccccHHHHHHHHhcCC---CCCcccCCCCC
Q 019053          124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNA---NCPLCRTSISG  174 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~---tCPlCR~~i~~  174 (347)
                      ...|+||++.|.+   ...++ |||.||..||..|++...   .||+||.++..
T Consensus        21 ~l~CpIC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   70 (103)
T d1jm7a_          21 ILECPICLELIKE---PVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK   70 (103)
T ss_dssp             HTSCSSSCCCCSS---CCBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred             CcCCCccCchhCC---eEEcC-CCCchhhHHHHHHHHHCCCCCcCcCCCCcCCh
Confidence            3579999999976   45677 999999999999997653   69999998853

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.93  E-value=2.2e-10  Score=82.22  Aligned_cols=51  Identities=20%  Similarity=0.510  Sum_probs=37.0

Q ss_pred             ccCcccccccccccCCcee-ecCCCCccccHHHHHHHHhc--CCCCCcccCCCC
Q 019053          123 SIYGCVVCLNEFQEQDMLR-VLPNCSHAFHLDCIDIWLQS--NANCPLCRTSIS  173 (347)
Q Consensus       123 ~~~~C~ICl~~~~~~~~~~-~lp~C~H~FH~~CI~~WL~~--~~tCPlCR~~i~  173 (347)
                      +...|.||++++....... ....|+|.||..||..|+..  +.+||+||+.+.
T Consensus         5 d~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            4567999999886543211 11124699999999999954  567999999864

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=4.7e-10  Score=87.91  Aligned_cols=46  Identities=26%  Similarity=0.613  Sum_probs=37.3

Q ss_pred             cCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCC
Q 019053          124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISG  174 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~  174 (347)
                      ...|+||++.|.+.  +...+ |||.||..||..|+.  ..||.||..+..
T Consensus        22 ~l~C~IC~~~~~~p--v~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~   67 (97)
T d1jm7b_          22 LLRCSRCTNILREP--VCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWI   67 (97)
T ss_dssp             TTSCSSSCSCCSSC--BCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred             cCCCccCCchhhcC--ceeCC-CCCchhHHHHHHHHh--ccccccCCcCch
Confidence            35799999999764  33345 999999999999985  459999988754

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.74  E-value=2.9e-09  Score=80.01  Aligned_cols=49  Identities=14%  Similarity=0.507  Sum_probs=41.6

Q ss_pred             ccCcccccccccccCCceeecCCCCccccHHHHHHHHhcC-CCCCcccCCCCCC
Q 019053          123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSN-ANCPLCRTSISGT  175 (347)
Q Consensus       123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~-~tCPlCR~~i~~~  175 (347)
                      +...|+||++.|.+   ..+++ |||.|+..||..|+..+ .+||.|+.++...
T Consensus         7 ~~l~CpIc~~~m~d---PV~~~-cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~   56 (78)
T d1t1ha_           7 EYFRCPISLELMKD---PVIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHA   56 (78)
T ss_dssp             SSSSCTTTSCCCSS---EEEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred             ccCCCcCcCchhhC---ceEcc-CCCcchHHHHHHHHHHCCCCCCcccccCCcc
Confidence            45789999999988   45777 99999999999999765 5699999988654

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.72  E-value=3.9e-09  Score=79.66  Aligned_cols=48  Identities=15%  Similarity=0.222  Sum_probs=40.8

Q ss_pred             ccCcccccccccccCCceeecCCCCccccHHHHHHHHhc-CCCCCcccCCCCC
Q 019053          123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS-NANCPLCRTSISG  174 (347)
Q Consensus       123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~-~~tCPlCR~~i~~  174 (347)
                      +...|+||++.|.+   ..+++ |||.|+..||..|+.. +.+||+||.++..
T Consensus         6 ~~l~CpIc~~l~~d---Pv~~~-cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~   54 (80)
T d2c2la2           6 DYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQ   54 (80)
T ss_dssp             STTBCTTTCSBCSS---EEECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred             ccccCcCcCchhhh---hcccC-CcCeecHHHHHHHHhcCCccCCCccccccc
Confidence            45679999999988   45777 9999999999999975 5579999998754

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=1.5e-08  Score=79.60  Aligned_cols=50  Identities=16%  Similarity=0.143  Sum_probs=42.9

Q ss_pred             ccCcccccccccccCCceeecCCCCccccHHHHHHHHhcCCCCCcccCCCCCC
Q 019053          123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNANCPLCRTSISGT  175 (347)
Q Consensus       123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~tCPlCR~~i~~~  175 (347)
                      +...|+||++.|.+   ..+++.|+|.|+..||..||..+.+||+|+.++...
T Consensus        21 ~~f~CPI~~~lm~d---PV~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~~   70 (98)
T d1wgma_          21 DEFLDPIMSTLMCD---PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD   70 (98)
T ss_dssp             TTTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred             HHhCCcCchhHHHH---HHhcccccchhhHHHHHHHHHhcCCcccccccccch
Confidence            45789999999998   667884556899999999999999999999988644

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=4.5e-08  Score=75.54  Aligned_cols=46  Identities=24%  Similarity=0.616  Sum_probs=37.4

Q ss_pred             ccCcccccccccccCCceeecCCCCccccHHHHHHHHhcC--------CCCCccc
Q 019053          123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSN--------ANCPLCR  169 (347)
Q Consensus       123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~--------~tCPlCR  169 (347)
                      +..+|+||++++...+.+..++ |+|.||.+||..|++..        -.||.|.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~-C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~   57 (94)
T d1wima_           4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAA   57 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTT
T ss_pred             CCCcCccCCCcccCCceEEECC-CCCEeCCcCHHHHHHHHHhcCCccccCCcCCC
Confidence            4568999999998877777776 99999999999999532        1499864

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.20  E-value=0.056  Score=35.71  Aligned_cols=44  Identities=32%  Similarity=0.699  Sum_probs=30.9

Q ss_pred             cccccccccccCCceeecCCCCccccHHHHHHHHhcCC----CCCcccC
Q 019053          126 GCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQSNA----NCPLCRT  170 (347)
Q Consensus       126 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~~~----tCPlCR~  170 (347)
                      .|.||-..-..+ .+..-..|...||..|++.-+....    .||.||.
T Consensus         2 ~C~vC~~~~~~~-~~i~Cd~C~~~~H~~C~~p~~~~~p~~~W~C~~C~~   49 (51)
T d1f62a_           2 RCKVCRKKGEDD-KLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCCS-CCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCcCcCCCCCCC-CEEEcCCCCCCCCCCCCCCCCCcCCCCCEECcCCcC
Confidence            488997664443 3445556999999999998764422    4999974

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.84  E-value=0.041  Score=38.19  Aligned_cols=49  Identities=22%  Similarity=0.504  Sum_probs=35.7

Q ss_pred             ccCcccccccccccCCceeecCCCCccccHHHHHHH---Hh--cCCCCCcccCC
Q 019053          123 SIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIW---LQ--SNANCPLCRTS  171 (347)
Q Consensus       123 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~W---L~--~~~tCPlCR~~  171 (347)
                      +...|.||...+..++..+.-..|+..||..|+..=   ..  .+-.||.|+..
T Consensus         5 ~~~~C~~C~~~~~~~~~~I~Cd~C~~w~H~~C~~~~~~~~~~~~~w~C~~C~~~   58 (64)
T d1we9a_           5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK   58 (64)
T ss_dssp             SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred             CCCcCcCcCCCCCCCCCEEEcCCCCccCCcccCCcChHHCCCCCeEECcCCcCc
Confidence            346799999988777665556679999999998642   11  23469999754

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.00  E-value=0.11  Score=35.63  Aligned_cols=45  Identities=24%  Similarity=0.606  Sum_probs=30.9

Q ss_pred             cCcccccccccccCCceeecCCCCccccHHHHHHHHhc----CCCCCcccCCC
Q 019053          124 IYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIWLQS----NANCPLCRTSI  172 (347)
Q Consensus       124 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~WL~~----~~tCPlCR~~i  172 (347)
                      ...|.||.+.   ++ +..-..|.-.||..|+...+..    .-.||.|+...
T Consensus         9 ~~~C~~C~~~---g~-lv~Cd~C~~~~H~~C~~~~~~~~~~~~W~C~~C~~~~   57 (61)
T d1mm2a_           9 MEFCRVCKDG---GE-LLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA   57 (61)
T ss_dssp             CSSCTTTCCC---SS-CBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred             cCCCcCCCCC---Ce-EEEeCCCCccCchhhcCCCcCcCCCCcEECCCCcCcc
Confidence            4569999742   33 4444468899999999876643    23599997654

>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: variant PHD-like domain
domain: Hypothetical protein KIAA1045
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.99  E-value=0.4  Score=35.10  Aligned_cols=36  Identities=19%  Similarity=0.461  Sum_probs=25.5

Q ss_pred             CCccCcccccccccccCCceeecCCCCccccHHHHHHH
Q 019053          121 DMSIYGCVVCLNEFQEQDMLRVLPNCSHAFHLDCIDIW  158 (347)
Q Consensus       121 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~W  158 (347)
                      ..++..|.|| +.|...+.. ---.|+-+||..|+..-
T Consensus        12 v~~D~mC~vC-~v~t~~~l~-pCRvCtRv~H~~CL~r~   47 (89)
T d1wila_          12 VVNDEMCDVC-EVWTAESLF-PCRVCTRVFHDGCLRRM   47 (89)
T ss_dssp             CCCSCCCTTT-CCCCSSCCS-SCSSSSSCCCHHHHHHH
T ss_pred             CCcCcccccc-Cccccccee-cceeecchhhHHHHHHh
Confidence            3456789999 666655432 22248899999999986

>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.42  E-value=0.98  Score=32.15  Aligned_cols=47  Identities=19%  Similarity=0.441  Sum_probs=31.8

Q ss_pred             ccccccccccCCceeecCCCCccccHHHHHH--HH-h--cCCCCCcccCCCC
Q 019053          127 CVVCLNEFQEQDMLRVLPNCSHAFHLDCIDI--WL-Q--SNANCPLCRTSIS  173 (347)
Q Consensus       127 C~ICl~~~~~~~~~~~lp~C~H~FH~~CI~~--WL-~--~~~tCPlCR~~i~  173 (347)
                      |.||...+..++..+.-..|.--||..|+..  .. .  .+-.||.|+....
T Consensus        14 ~CiC~~~~~~~~~mI~Cd~C~~W~H~~C~g~~~~~~~~~~~~~C~~C~~~~g   65 (79)
T d1wepa_          14 YCLCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG   65 (79)
T ss_dssp             CSTTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred             EeECCCccCCCCcEEECCCCCCcEeccccCcchhcCCCCCEEECccCcCCcC
Confidence            4499987766655555556888999999852  22 1  2356999976543