Citrus Sinensis ID: 019057

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340------
MALEQLSLARTPVDGETDGVNNGVEQRTTTASIDGGDDGCKAPRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWESHVKDGTESFWVMRNDLRRERKLPGFFDREVYDILDGAATVASSASPGLGLALAPAEETTTDEAVFDSGRSAAADDGLFSDFEPEETTGTPVKDDAPAEAAPAAAKPISATMPIPEKQYQPNLRGCHGQGTTTEKQPAPEIGSTSQDGRKRKRFTVDGDEEMSNMQYQLIDVLERNGKMLTAQLEAQNNSFQLDREQRKDHADSLVAVLNKLADALGRIADKL
cccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHcHHHHHHHccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
ccHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHcccHHHHHHcccccccHHHHHHHHHccccccccccccHHHccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
maleqlslartpvdgetdgvnngveqrtttasidggddgckaprlprwtRQEILVLIQGKRVaenrvrrgraagmgfgsgqiepkwASVSSYCkrhgvnrgpvqcrKRWSNLAGDFKKIKEWESHVKDGTESFWVMRNDLrrerklpgffdrevyDILDGAatvassaspglglalapaeetttdeavfdsgrsaaaddglfsdfepeettgtpvkddapaeaapaaakpisatmpipekqyqpnlrgchgqgtttekqpapeigstsqdgrkrkrftvdgdeemSNMQYQLIDVLERNGKMLTAQLEAQNNSFQLDREQRKDHADSLVAVLNKLADALGRIADKL
maleqlslartpvdgetdgvnngveqrtttasidggddgckaprlprwtrQEILvliqgkrvaenrvrrgraagmgfgsgqiepkWASVSSYCKRHGvnrgpvqcrkrWSNLAGdfkkikeweshvkdgtesfwvmrnDLRRERKLPGFFDREVYDILDGAATVASSASPGLGLALAPAEETTTDEAVFDSGRSAAADDGLFSDFEPEETtgtpvkddapaEAAPAaakpisatmpiPEKQYQPNLRGCHGQgtttekqpapeigstsqdgrkrkrftvdgdeemsnMQYQLIDVLERNGKMLTAQLEAQNNSFQLDREQRKDHADSLVAVLNKLADALGRIADKL
MALEQLSLARTPVDGETDGVNNGVEQRTTTASIDGGDDGCKAPRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWESHVKDGTESFWVMRNDLRRERKLPGFFDREVYDILDGAATVassaspglglalapaeetttdeaVFDSGRSAAADDGLFSDFEPEETTGTPVKDDapaeaapaaakpisaTMPIPEKQYQPNLRGCHGQGTTTEKQPAPEIGSTSQDGRKRKRFTVDGDEEMSNMQYQLIDVLERNGKMLTAQLEAQNNSFQLDREQRKDHADSLVAVLNKLADALGRIADKL
*****************************************APRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWESHVKDGTESFWVMRNDLRRERKLPGFFDREVYDILDGAATVA****************************************************************************************************************************YQLIDVLE******************************LVAVLNKLAD*********
***************************************************EILVLIQGKRV********************EPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKI**************WVMRNDLRRERKLPGFFDREVYDIL************************************************************************************************************************************************************************SLVAVLNKLADALGRIADKL
MALEQLSLARTPVDGETDGVNNGVEQRTTTASIDGGDDGCKAPRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWESHVKDGTESFWVMRNDLRRERKLPGFFDREVYDILDGAATVASSASPGLGLALAPAEETTTDEAVFDSGRSAAADDGLFSDFEPEETTGTPVKD***********KPISATMPIPEKQYQPNLRGCH************************KRFTVDGDEEMSNMQYQLIDVLERNGKMLTAQLEAQNNSFQLDREQRKDHADSLVAVLNKLADALGRIADKL
********************************************LPRWTRQEILVLIQGKRVAENRVR************QIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWESHVKDGTESFWVMRNDLRRERKLPGFFDREVYDILDGAATV************************************************************************************************************************MSNMQYQLIDVLERNGKMLTAQLEAQNNSFQLDREQRKDHADSLVAVLNKLADALGRIADKL
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MALEQLSLARTPVDGETDGVNNGVEQRTTTASIDGGDDGCKAPRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWESHVKDGTESFWVMRNDLRRERKLPGFFDREVYDILDGAATVASSASPGLGLALAPAEETTTDEAVFDSGRSAAADDGLFSDFEPEETTGTPVKDDAPAEAAPAAAKPISATMPIPEKQYQPNLRGCHGQGTTTEKQPAPEIGSTSQDGRKRKRFTVDGDEEMSNMQYQLIDVLERNGKMLTAQLEAQNNSFQLDREQRKDHADSLVAVLNKLADALGRIADKL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query346 2.2.26 [Sep-21-2011]
Q39117575 Trihelix transcription fa no no 0.245 0.147 0.287 0.0002
Q9C882587 Trihelix transcription fa no no 0.190 0.112 0.32 0.0002
Q9LU92372 Trihelix transcription fa no no 0.609 0.567 0.259 0.0002
Q9FX53406 Trihelix transcription fa no no 0.320 0.273 0.286 0.0009
>sp|Q39117|TGT2_ARATH Trihelix transcription factor GT-2 OS=Arabidopsis thaliana GN=GT-2 PE=2 SV=1 Back     alignment and function desciption
 Score = 47.4 bits (111), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 9/94 (9%)

Query: 28  TTTASIDGGDDGCKAPRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWA 87
           TT    +  ++   +P   RW + E+  LI        R+R+   A     +G   P W 
Sbjct: 378 TTIKMGNYDNNHSVSPSSSRWPKTEVEALI--------RIRKNLEANYQ-ENGTKGPLWE 428

Query: 88  SVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKE 121
            +S+  +R G NR   +C+++W N+   FKK+KE
Sbjct: 429 EISAGMRRLGYNRSAKRCKEKWENINKYFKKVKE 462
Probable transcription factor that binds specific DNA sequence.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9C882|GTL1_ARATH Trihelix transcription factor GTL1 OS=Arabidopsis thaliana GN=GTL1 PE=1 SV=2 Back     alignment and function description
>sp|Q9LU92|TGT4_ARATH Trihelix transcription factor GT-4 OS=Arabidopsis thaliana GN=GT-4 PE=2 SV=1 Back     alignment and function description
>sp|Q9FX53|TGT1_ARATH Trihelix transcription factor GT-1 OS=Arabidopsis thaliana GN=GT-1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query346
255543204347 conserved hypothetical protein [Ricinus 0.979 0.976 0.723 1e-130
224057842346 predicted protein [Populus trichocarpa] 0.959 0.959 0.7 1e-129
359473824340 PREDICTED: uncharacterized protein LOC10 0.956 0.973 0.673 1e-127
449445594355 PREDICTED: uncharacterized protein LOC10 0.973 0.949 0.673 1e-124
224072471314 predicted protein [Populus trichocarpa] 0.901 0.993 0.643 1e-113
356576939319 PREDICTED: uncharacterized protein LOC10 0.884 0.959 0.660 1e-111
356536587325 PREDICTED: uncharacterized protein LOC10 0.887 0.944 0.642 1e-111
356567186329 PREDICTED: uncharacterized protein LOC10 0.930 0.978 0.597 1e-100
356526615326 PREDICTED: uncharacterized protein LOC10 0.921 0.978 0.589 1e-100
30685749314 gt-2-related protein [Arabidopsis thalia 0.867 0.955 0.583 2e-99
>gi|255543204|ref|XP_002512665.1| conserved hypothetical protein [Ricinus communis] gi|223548626|gb|EEF50117.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 256/354 (72%), Positives = 287/354 (81%), Gaps = 15/354 (4%)

Query: 1   MALEQ-LSLARTPVDGETDGVNNGVEQRTTTASIDGGDDGCKAPRLPRWTRQEILVLIQG 59
           MAL+Q  +L    VDG+T    NGV+  T  ASIDG DDG K PRLPRWTRQEILVLIQG
Sbjct: 1   MALQQQFNLTSNTVDGDT---TNGVDN-TRPASIDGADDGSKTPRLPRWTRQEILVLIQG 56

Query: 60  KRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKI 119
           K+VAENRVRRGR AGM FGSGQ+EPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGD+KKI
Sbjct: 57  KKVAENRVRRGRTAGMAFGSGQVEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDYKKI 116

Query: 120 KEWESHVKDGTESFWVMRNDLRRERKLPGFFDREVYDILDGAATV-ASSASPGLGLALAP 178
           KEWE+H+++ TESFWVMRNDLRRERKLPGFFDREV+DILDGA  V A+ A+PGL LALAP
Sbjct: 117 KEWENHIREETESFWVMRNDLRRERKLPGFFDREVFDILDGAGGVSAAPATPGLALALAP 176

Query: 179 AEETTTDEAVFDSGRSAAADDGLFSDFEPEETTGTPVKDDAPAEAAP---AAAKPISATM 235
           A E +  EAVFDSGR+AAA+DGLFSDFE E+  G+P K +A  EA P   AA   I+A +
Sbjct: 177 ATEDS--EAVFDSGRTAAAEDGLFSDFEQEDAGGSPEK-EAVKEAPPIKAAATGGIAAPV 233

Query: 236 PIPEKQYQPNLRGCHGQGTTTEKQPA--PEIGSTSQDGRKRKRF-TVDGDEEMSNMQYQL 292
           PI EKQYQP +R    QG T EKQP   PE+GS   + RKRKRF T DGDEE + +Q QL
Sbjct: 234 PISEKQYQPAVRTDQSQGATNEKQPPSNPEMGSGLHESRKRKRFGTTDGDEETTTLQNQL 293

Query: 293 IDVLERNGKMLTAQLEAQNNSFQLDREQRKDHADSLVAVLNKLADALGRIADKL 346
           I VLERNG+MLTAQLEAQN +FQLDREQRKD A+SLVAVLNKLADALG+IADKL
Sbjct: 294 IGVLERNGEMLTAQLEAQNTNFQLDREQRKDQANSLVAVLNKLADALGKIADKL 347

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224057842|ref|XP_002299351.1| predicted protein [Populus trichocarpa] gi|222846609|gb|EEE84156.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359473824|ref|XP_002269943.2| PREDICTED: uncharacterized protein LOC100267783 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449445594|ref|XP_004140557.1| PREDICTED: uncharacterized protein LOC101222632 [Cucumis sativus] Back     alignment and taxonomy information
>gi|224072471|ref|XP_002303748.1| predicted protein [Populus trichocarpa] gi|222841180|gb|EEE78727.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356576939|ref|XP_003556587.1| PREDICTED: uncharacterized protein LOC100779050 [Glycine max] Back     alignment and taxonomy information
>gi|356536587|ref|XP_003536818.1| PREDICTED: uncharacterized protein LOC100797767 [Glycine max] Back     alignment and taxonomy information
>gi|356567186|ref|XP_003551802.1| PREDICTED: uncharacterized protein LOC100788594 [Glycine max] Back     alignment and taxonomy information
>gi|356526615|ref|XP_003531912.1| PREDICTED: uncharacterized protein LOC100804601 [Glycine max] Back     alignment and taxonomy information
>gi|30685749|ref|NP_850213.1| gt-2-related protein [Arabidopsis thaliana] gi|17529158|gb|AAL38805.1| unknown protein [Arabidopsis thaliana] gi|20465851|gb|AAM20030.1| unknown protein [Arabidopsis thaliana] gi|330253757|gb|AEC08851.1| gt-2-related protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query346
TAIR|locus:2051174314 AT2G33550 [Arabidopsis thalian 0.436 0.480 0.775 1.3e-90
TAIR|locus:2058718340 AT2G35640 [Arabidopsis thalian 0.329 0.335 0.360 2.1e-12
TAIR|locus:2128186294 AT4G31270 [Arabidopsis thalian 0.355 0.418 0.274 2.9e-09
TAIR|locus:2197490383 AT1G31310 [Arabidopsis thalian 0.329 0.297 0.316 4e-08
TAIR|locus:2165331 972 AT5G51800 [Arabidopsis thalian 0.323 0.115 0.324 2.2e-07
TAIR|locus:2051174 AT2G33550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 644 (231.8 bits), Expect = 1.3e-90, Sum P(2) = 1.3e-90
 Identities = 124/160 (77%), Positives = 136/160 (85%)

Query:     1 MALEQLSLARTPVDGETDGVNNGVEQRTTTASIDGGDDGCKAPRLPRWTRQEILVLIQGK 60
             MALEQL L  + VDG   G N+      +  S DGGDDG K  RLPRWTRQEILVLIQGK
Sbjct:     1 MALEQLGLGVSAVDG---GENS------SAPSNDGGDDGVKTARLPRWTRQEILVLIQGK 51

Query:    61 RVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIK 120
             RVAENRVRRGRAAGM  GSGQ+EPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGD+KKIK
Sbjct:    52 RVAENRVRRGRAAGMALGSGQMEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDYKKIK 111

Query:   121 EWESHVKDGTESFWVMRNDLRRERKLPGFFDREVYDILDG 160
             EWES +K+ TES+WVMRND+RRE+KLPGFFD+EVYDI+DG
Sbjct:   112 EWESQIKEETESYWVMRNDVRREKKLPGFFDKEVYDIVDG 151
GO:0005634 "nucleus" evidence=ISM
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
TAIR|locus:2058718 AT2G35640 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2128186 AT4G31270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197490 AT1G31310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2165331 AT5G51800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00010542
hypothetical protein (346 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query346
cd1220366 cd12203, GT1, GT1, myb-like, SANT family 4e-12
pfam1383784 pfam13837, Myb_DNA-bind_4, Myb/SANT-like DNA-bindi 9e-11
pfam1387378 pfam13873, Myb_DNA-bind_5, Myb/SANT-like DNA-bindi 0.004
>gnl|CDD|213402 cd12203, GT1, GT1, myb-like, SANT family Back     alignment and domain information 
 Score = 60.4 bits (147), Expect = 4e-12
 Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 9/75 (12%)

Query: 46  PRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQC 105
            RW R+E L LI+ +R  E+R +  ++          +  W  +++  +  G NR   QC
Sbjct: 1   KRWPREETLSLIRLRREMESRFQETKSK---------KALWEEIAAKMRELGYNRSAKQC 51

Query: 106 RKRWSNLAGDFKKIK 120
           +++W NL   +KK+K
Sbjct: 52  KEKWENLNKYYKKVK 66

GT-1, a myb-like protein, is one of the GT trihelix transcription factors. GT-1 binds the GT cis-element of rbcS-3A, a light-induced gene, as a dimer. Arabidopsis GT-1 is a trans-activator and acts in the stabilization of components of the transcrtiption pre-initiation complex comprised of TFIIA-TBP-TATA. The isolated GT-1 DNA-binding domain is sufficient to bind DNA. This region closely resemble the myb domain, but with longer helices. It has been proposed that GT-1 may respond to light signals via calcium-dependent phosphorylation to create a light-modulated molecular switch. These proteins are members of the SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. The SANT domain resembles the 3 alpha-helix bundle of the DNA-binding Myb domains and is found in a diverse set of proteins. Length = 66
>gnl|CDD|222409 pfam13837, Myb_DNA-bind_4, Myb/SANT-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|222429 pfam13873, Myb_DNA-bind_5, Myb/SANT-like DNA-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 346
PF1383790 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; 99.65
KOG4282345 consensus Transcription factor GT-2 and related pr 99.43
PF1387378 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain 98.26
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 97.89
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 97.47
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 97.27
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 96.93
PLN03212249 Transcription repressor MYB5; Provisional 96.79
PF1277696 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; 96.78
PLN03091 459 hypothetical protein; Provisional 96.34
smart0059589 MADF subfamily of SANT domain. 95.42
PLN03212249 Transcription repressor MYB5; Provisional 95.25
PLN03091 459 hypothetical protein; Provisional 95.02
PF1054585 MADF_DNA_bdg: Alcohol dehydrogenase transcription 94.03
KOG1279506 consensus Chromatin remodeling factor subunit and 90.11
KOG0048238 consensus Transcription factor, Myb superfamily [T 89.97
KOG0051607 consensus RNA polymerase I termination factor, Myb 80.09
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A Back     alignment and domain information 
Probab=99.65  E-value=2.2e-16  Score=124.46  Aligned_cols=75  Identities=32%  Similarity=0.585  Sum_probs=55.1

Q ss_pred             CCCCHHHHHHHHHHHHH--HhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHHHHHHHHHhhh
Q 019057           46 PRWTRQEILVLIQGKRV--AENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWE  123 (346)
Q Consensus        46 p~WT~~EtLvLI~arre--~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~dYKkVkdwe  123 (346)
                      .+||.+||++||+++.+  ++..|..++..       .....|+.|++.|..+||.|++.||+.||+||.+.||+++++.
T Consensus         2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~-------~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~~k~~~   74 (90)
T PF13837_consen    2 RNWTDEETKLLIELWKENLMELRFDNGGKK-------RNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKKIKDRN   74 (90)
T ss_dssp             -SS-HHHHHHHHHHHHH--HHHHHHH--SS---------HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHCSSSSS
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhhccc-------cchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence            58999999999999999  55556432201       1245899999999999999999999999999999999999998


Q ss_pred             hccC
Q 019057          124 SHVK  127 (346)
Q Consensus       124 r~~~  127 (346)
                      ...+
T Consensus        75 ~~~~   78 (90)
T PF13837_consen   75 KKSG   78 (90)
T ss_dssp             S---
T ss_pred             CCCC
Confidence            7653

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription] Back     alignment and domain information
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain Back     alignment and domain information
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>smart00595 MADF subfamily of SANT domain Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats Back     alignment and domain information
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query346
2ebi_A86 DNA binding protein GT-1; DNA-binding domain, phos 4e-22
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-07
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Length = 86 Back     alignment and structure
 Score = 87.9 bits (218), Expect = 4e-22
 Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 9/91 (9%)

Query: 44  RLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPV 103
           R   W + E   LI  +R  +      ++             W  +SS  +  G +R P 
Sbjct: 3   RAETWVQDETRSLIMFRRGMDGLFNTSKSNK---------HLWEQISSKMREKGFDRSPD 53

Query: 104 QCRKRWSNLAGDFKKIKEWESHVKDGTESFW 134
            C  +W NL  +FKK K  +        S++
Sbjct: 54  MCTDKWRNLLKEFKKAKHHDRGNGSAKMSYY 84
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query346
2ebi_A86 DNA binding protein GT-1; DNA-binding domain, phos 99.83
3sjm_A64 Telomeric repeat-binding factor 2; human telomeric 98.28
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 98.13
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 98.13
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 98.02
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 97.98
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 97.95
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 97.92
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 97.9
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 97.88
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 97.84
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 97.79
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 97.79
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 97.77
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 97.68
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 97.67
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 97.67
2cjj_A93 Radialis; plant development, DNA-binding protein, 97.61
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 97.59
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 97.46
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 97.46
2cqq_A72 RSGI RUH-037, DNAJ homolog subfamily C member 1; m 97.45
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 97.19
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 97.13
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 97.09
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 97.05
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 97.0
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 96.02
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 96.92
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 96.75
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 96.47
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 96.45
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 96.35
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 96.09
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 95.71
1wgx_A73 KIAA1903 protein; MYB DNA-binding domain, human cD 95.35
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 94.99
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 94.57
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 94.17
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 92.58
3hm5_A93 DNA methyltransferase 1-associated protein 1; DNA 85.93
1ug2_A95 2610100B20RIK gene product; hypothetical protein, 82.29
2xag_B482 REST corepressor 1; amine oxidase, chromatin regul 81.72
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Back     alignment and structure
Probab=99.83  E-value=4.1e-21  Score=152.23  Aligned_cols=84  Identities=25%  Similarity=0.495  Sum_probs=73.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHHHHHHHHHh
Q 019057           42 APRLPRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKE  121 (346)
Q Consensus        42 ~~R~p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~dYKkVkd  121 (346)
                      ++|.++||.+||++||+++++++.+|..+.+         ...+|++||+.|..+||+||+.||+.||+||.+.||+|++
T Consensus         1 kkR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~---------~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k~   71 (86)
T 2ebi_A            1 KKRAETWVQDETRSLIMFRRGMDGLFNTSKS---------NKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAKH   71 (86)
T ss_dssp             CCCSCCCCHHHHHHHHHHHHHHHHHHHHSSC---------CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCSS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHcccc---------chHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            4789999999999999999999999876541         3679999999999999999999999999999999999999


Q ss_pred             hhhccCCCCCCcc
Q 019057          122 WESHVKDGTESFW  134 (346)
Q Consensus       122 wer~~~~g~~SYW  134 (346)
                      +++.++.+.-+||
T Consensus        72 ~~~~sG~~~~~yf   84 (86)
T 2ebi_A           72 HDRGNGSAKMSYY   84 (86)
T ss_dssp             CCCCCCCCCCCCC
T ss_pred             hcccCCCCCCCCC
Confidence            9987644444555
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Back     alignment and structure
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Back     alignment and structure
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Back     alignment and structure
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens} Back     alignment and structure
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query346
d2cjja163 Radialis {Garden snapdragon (Antirrhinum majus) [T 98.05
d1w0ta_52 DNA-binding domain of human telomeric protein, hTR 97.98
d2ckxa183 Telomere binding protein TBP1 {Tobacco (Nicotiana 97.96
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 97.92
d1w0ua_55 Telomeric repeat binding factor 2, TRF2 {Human (Ho 97.91
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 97.84
d1gvda_52 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 97.77
d1gv2a247 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 97.49
d2cqra160 DnaJ homolog subfamily C member 1 {Human (Homo sap 97.39
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 97.34
d1ug2a_95 2610100b20rik gene product {Mouse (Mus musculus) [ 97.34
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 97.06
d1igna186 DNA-binding domain of rap1 {Baker's yeast (Sacchar 96.88
d2cqqa159 DnaJ homolog subfamily C member 1 {Human (Homo sap 94.5
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 94.21
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=98.05  E-value=3.7e-06  Score=61.28  Aligned_cols=56  Identities=23%  Similarity=0.444  Sum_probs=45.4

Q ss_pred             CCCCHHHHHHHHHHHHHHhHHhhhcccCCCCCCCCCCcchHHHHHHHHHhcCCCCChHHhhHHHHHHHHHHHHHH
Q 019057           46 PRWTRQEILVLIQGKRVAENRVRRGRAAGMGFGSGQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIK  120 (346)
Q Consensus        46 p~WT~~EtLvLI~arre~e~r~~~g~~~~~a~~s~q~~~kWe~Vs~~c~~~Gv~Rs~~QCr~KWeNLl~dYKkVk  120 (346)
                      ..||..|-..|+++-...    ..+        .   ..+|..||.++-    .|++.||+.+|..|+.+.|.|.
T Consensus         2 ~~WT~eEd~~L~~~v~~~----~~~--------~---~~~W~~Ia~~l~----gRt~~qc~~r~~~L~~dik~ie   57 (63)
T d2cjja1           2 RPWSAKENKAFERALAVY----DKD--------T---PDRWANVARAVE----GRTPEEVKKHYEILVEDIKYIE   57 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHS----CTT--------C---TTHHHHHHHHST----TCCHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHH----CCC--------C---chHHHHHHHHcC----CCCHHHHHHHHHHHHHHhhccc
Confidence            469999999999985422    111        1   348999999997    5999999999999999998876
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure